Citrus Sinensis ID: 048551

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
Protein Sequence
MHLPSVLQLFSALSLRLWCTTTTTIINANETDRLALLAIKSQLHDPLEVTSSLTNSVNLCEWTGVTCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYNHFDGEVPTKGVFNNKTRISLAGNGKLCGGFDGLHSPSCHSKDQEKSLYSNW
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccccccccccEEEEcccccEEEEcccccEEEccccccccccccEEEccccEEcccccHHHHccccccccccccccccccccccccccccccEEEEcccccEEccccccccccccccEEccccccccccccccccccccccEEccccccEEcccccccccccccEEcccccccccccHHHHcccccccccccccccccccccHHcccccccccccccccccEEcccHHHHccccccEEEccccccccccccccccccccccccccccccccccccccEEEcccccccccccHHccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccccccccccEEEEcccEEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccccccccccEEEEEccccccccccHHHHHccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccccccccccEEEcccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MHLPSVLQLFSALSLRLWCTTTTTIINANETDRLALLAIKSqlhdplevtSSLTNSVNLCEWTGVTCASLRFiniadngvqgeipnelgNLVRLEKLILannsfsgtiptnLSLRSKLMLFFANrnilageipaeignlfkleKLSFCVIKLTGQLPASIQNLSSHleadsnrnnfggkipespgqlrSLFYLNvggnqfsgmflpvynlssleMIYLhdnrlngnlppvigaklpNLRKIVIALNnftgplpdsfsnasnreRLELSYNQFRGKSIWRSAATSYSqrlndddqnhhgrqqnicylptgisnlvnldslatdSLKSIEEldlssnnlsgqlprLLVNLSFLVLLNLYnhfdgevptkgvfnnktrislagngklcggfdglhspschskdqekslysnw
Flexible Loop (DISEMBL)
MHLPSVLQLFSALSLRLWCTTTTTIINANETDRLALLAIKSQLHDPLEVTSSLTNSVNLCEWTGVTCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYNHFDGEVPTKGVFNNKTRISLAGNGKLCGGFDGlhspschskdqekslysnw
Low Complexity Region (SEG)
MHLPSVLQLFSALSLRLWCtttttiiNANETDRLALLAIKSQLHDPLEVTSSLTNSVNLCEWTGVTCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQlprllvnlsflvllnlYNHFDGEVPTKGVFNNKTRISLAGNGKLCGGFDGLHSPSCHSKDQEKSLYSNW
Disordered region (IsUnstruct)
*****VLQLFSALSLRLWCTTTTTIINANETDRLALLAIKSQLHDPLEVTSSLTNSVNLCEWTGVTCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANR************NLFKLEKLSFCVIKLTGQLPAS***************************LRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPL****************YNQFRGKSIWR*********************QNICYLPTGISNLVNLDSLATDSLKSIEELDL**NNLSGQLPRLLVNLSFLVLLNLYNHFDGEVPTKGVFNNKTRISLAGNGKLCGGFDGL******************
Disordered Region (DISOPRED)
**LPSVLQLFSALSLRLWCTTTTTIINANETDRLALLAIKSQLHDPLEVTSSLTNSVNLCEWTGVTCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYNHFDGEVPTKGVFNNKTRISLAGNGKLCGGFD********************
Disordered Region (DISEMBL)
MHLPSVLQLFSALSLRLWCTTTTTIINANETDRLALLAIKSQLHDPLEVTSSLTNSVNLCEWTGVTCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYNHFDGEVPTKGVFNNKTRISLAGNGKLCGGFDGLHSP***************
Disordered Region (DISPRO)
*HLPSVLQLFSALSLRLWCTTTTTIINANETDRLALLAIKSQLHDPLEVTSSLTNSVNLCEWTGVTCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYNHFDGEVPTKGVFNNKTRISLAGNGKLCGGFDGLHSPSC*************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHLPSVLQLFSALSLRLWCTTTTTIINANETDRLALLAIKSQLHDPLEVTSSLTNSVNLCEWTGVTCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYNHFDGEVPTKGVFNNKTRISLAGNGKLCGGFDGLHSPSCHSKDQEKSLYSNW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	409	2.2.26 [Sep-21-2011]
C0LGT6	1031	LRR receptor-like serine/	yes	no	0.882	0.350	0.320	2e-36
Q9SD62	1025	Putative receptor-like pr	no	no	0.889	0.355	0.321	3e-35
C0LGP4	1010	Probable LRR receptor-lik	no	no	0.731	0.296	0.303	2e-30
C0LGF5	1072	Probable LRR receptor-lik	no	no	0.750	0.286	0.300	4e-29
Q9FL28	1173	LRR receptor-like serine/	no	no	0.706	0.246	0.327	4e-28
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.713	0.233	0.309	1e-27
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.662	0.259	0.307	1e-27
O49318	1124	Probable leucine-rich rep	no	no	0.748	0.272	0.319	1e-27
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.882	0.327	0.280	2e-27
Q9C9H7	847	Receptor-like protein 12	no	no	0.782	0.377	0.300	3e-27

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score =  154 bits (388), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 142/443 (32%), Positives = 205/443 (46%), Gaps = 82/443 (18%)

Query: 9   LFSALSLRLWCTTTTTIINANETDRLALLAIKSQLHD--PLEVTSSLTNSVNLCEWTGVT 66
           +F+AL+L L          +NETD  ALL  KSQ+ +    EV +S  +S   C W GVT
Sbjct: 8   VFNALTLLLQVCIFAQARFSNETDMQALLEFKSQVSENNKREVLASWNHSSPFCNWIGVT 67

Query: 67  CAS----------------------------LRFINIADNGVQGEIPNELGNLVRLEKLI 98
           C                              LR +N+ADN     IP ++G L RL+ L 
Sbjct: 68  CGRRRERVISLNLGGFKLTGVISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLN 127

Query: 99  LANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPA 158
           ++ N   G IP++LS  S+L     + N L   +P+E+G+L KL  L      LTG  PA
Sbjct: 128 MSYNLLEGRIPSSLSNCSRLSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNFPA 187

Query: 159 SIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLP-VYNLSSLEMIY 217
           S+ NL+S  + D   N   G+IP+   +L  + +  +  N FSG F P +YN+SSLE + 
Sbjct: 188 SLGNLTSLQKLDFAYNQMRGEIPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLESLS 247

Query: 218 LHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRG--- 274
           L DN  +GNL    G  LPNLR++++  N FTG +P + +N S+ ER ++S N   G   
Sbjct: 248 LADNSFSGNLRADFGYLLPNLRRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSGSIP 307

Query: 275 ------KSIW--------------------RSAATSYSQRLNDDDQNHHGRQQNICYLPT 308
                 +++W                     + A        D   N  G +     LP 
Sbjct: 308 LSFGKLRNLWWLGIRNNSLGNNSSSGLEFIGAVANCTQLEYLDVGYNRLGGE-----LPA 362

Query: 309 GISNL-VNLDSL-------------ATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLL 354
            I+NL   L SL                +L S++EL L +N LSG+LP     L  L ++
Sbjct: 363 SIANLSTTLTSLFLGQNLISGTIPHDIGNLVSLQELSLETNMLSGELPVSFGKLLNLQVV 422

Query: 355 NLY-NHFDGEVPTKGVFNNKTRI 376
           +LY N   GE+P+   F N TR+
Sbjct: 423 DLYSNAISGEIPS--YFGNMTRL 443

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1

 Score =  149 bits (376), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 141/438 (32%), Positives = 205/438 (46%), Gaps = 74/438 (16%)

Query: 1   MHLPSVLQLFSALSLR---LWCTTTTTIINANETDRLALLAIKSQLHDPLEVT-SSLTNS 56
           M L  V  L  ++SL    + C  T  +    ETD+ ALL  KSQ+ +   V   S  +S
Sbjct: 8   MRLILVSALLVSVSLEHSDMVCAQTIRL--TEETDKQALLEFKSQVSETSRVVLGSWNDS 65

Query: 57  VNLCEWTGVTC----------------------------ASLRFINIADNGVQGEIPNEL 88
           + LC WTGV C                            + LR +N+ADN   G IP+E+
Sbjct: 66  LPLCSWTGVKCGLKHRRVTGVDLGGLKLTGVVSPFVGNLSFLRSLNLADNFFHGAIPSEV 125

Query: 89  GNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC 148
           GNL RL+ L ++NN F G IP  LS  S L     + N L   +P E G+L KL  LS  
Sbjct: 126 GNLFRLQYLNMSNNLFGGVIPVVLSNCSSLSTLDLSSNHLEQGVPLEFGSLSKLVLLSLG 185

Query: 149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMF-LPV 207
              LTG+ PAS+ NL+S    D   N   G+IP    +L+ + +  +  N+F+G+F  P+
Sbjct: 186 RNNLTGKFPASLGNLTSLQMLDFIYNQIEGEIPGDIARLKQMIFFRIALNKFNGVFPPPI 245

Query: 208 YNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLEL 267
           YNLSSL  + +  N  +G L P  G+ LPNL+ + + +N+FTG +P++ SN S+  +L++
Sbjct: 246 YNLSSLIFLSITGNSFSGTLRPDFGSLLPNLQILYMGINSFTGTIPETLSNISSLRQLDI 305

Query: 268 SYNQFRGK---------------------SIWRSAATSYSQRLNDDDQNHH---GRQQNI 303
             N   GK                       + S    +   L +  Q  +   G  +  
Sbjct: 306 PSNHLTGKIPLSFGRLQNLLLLGLNNNSLGNYSSGDLDFLGALTNCSQLQYLNVGFNKLG 365

Query: 304 CYLPTGISNL-VNLDSLA-------------TDSLKSIEELDLSSNNLSGQLPRLLVNLS 349
             LP  I+NL   L  L+               +L S++ LDL  N L+G+LP  L  LS
Sbjct: 366 GQLPVFIANLSTQLTELSLGGNLISGSIPHGIGNLVSLQTLDLGENLLTGKLPPSLGELS 425

Query: 350 FLVLLNLY-NHFDGEVPT 366
            L  + LY N   GE+P+
Sbjct: 426 ELRKVLLYSNGLSGEIPS 443

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score =  133 bits (335), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 108/356 (30%), Positives = 158/356 (44%), Gaps = 57/356 (16%)

Query: 47  LEVTSSLTNSVNLCEWTGVTCASLRFINIADNGVQGEIPNELGNL-VRLEKLILANNSFS 105
           LE  +SLTN           C  L  + I  N + G++P  + NL  +L  L L     S
Sbjct: 326 LEFLTSLTN-----------CTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLIS 374

Query: 106 GTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSS 165
           G+IP ++     L     ++N+L+G +P  +G L  L  LS    +L+G +PA I N++ 
Sbjct: 375 GSIPYDIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTM 434

Query: 166 HLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMF-LPVYNLSSLEMIYLHDNRLN 224
               D + N F G +P S G    L  L +G N+ +G   L +  +  L  + +  N L 
Sbjct: 435 LETLDLSNNGFEGIVPTSLGNCSHLLELWIGDNKLNGTIPLEIMKIQQLLRLDMSGNSLI 494

Query: 225 GNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATS 284
           G+LP  IGA L NL  + +  N  +G LP +  N    E L L  N F G          
Sbjct: 495 GSLPQDIGA-LQNLGTLSLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYG---------- 543

Query: 285 YSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRL 344
                                           D      L  ++E+DLS+N+LSG +P  
Sbjct: 544 --------------------------------DIPDLKGLVGVKEVDLSNNDLSGSIPEY 571

Query: 345 LVNLSFLVLLNL-YNHFDGEVPTKGVFNNKTRISLAGNGKLCGGFDGLHSPSCHSK 399
             + S L  LNL +N+ +G+VP KG+F N T +S+ GN  LCGG  G     C S+
Sbjct: 572 FASFSKLEYLNLSFNNLEGKVPVKGIFENATTVSIVGNNDLCGGIMGFQLKPCLSQ 627

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGF5|Y1341_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g34110 OS=Arabidopsis thaliana GN=At1g34110 PE=2 SV=2

 Score =  129 bits (324), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 120/399 (30%), Positives = 188/399 (47%), Gaps = 92/399 (23%)

Query: 67  CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRN 126
           C+SL   +++ N + G+IP +LG LV LE+L L++N F+G IP  LS  S L+    ++N
Sbjct: 307 CSSLVVFDVSANDLTGDIPGDLGKLVWLEQLQLSDNMFTGQIPWELSNCSSLIALQLDKN 366

Query: 127 ILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPE---- 182
            L+G IP++IGNL  L+        ++G +P+S  N +  +  D +RN   G+IPE    
Sbjct: 367 KLSGSIPSQIGNLKSLQSFFLWENSISGTIPSSFGNCTDLVALDLSRNKLTGRIPEELFS 426

Query: 183 --------------------SPGQLRSLFYLNVGGNQFSG------------MFLPVY-- 208
                               S  + +SL  L VG NQ SG            +FL +Y  
Sbjct: 427 LKRLSKLLLLGNSLSGGLPKSVAKCQSLVRLRVGENQLSGQIPKEIGELQNLVFLDLYMN 486

Query: 209 -----------NLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFS 257
                      N++ LE++ +H+N + G++P  +G  L NL ++ ++ N+FTG +P SF 
Sbjct: 487 HFSGGLPYEISNITVLELLDVHNNYITGDIPAQLG-NLVNLEQLDLSRNSFTGNIPLSFG 545

Query: 258 NAS---------------------NRER---LELSYNQFRGKSIWRSAATSYSQRLNDDD 293
           N S                     N ++   L+LSYN   G+ I +      S  +N  D
Sbjct: 546 NLSYLNKLILNNNLLTGQIPKSIKNLQKLTLLDLSYNSLSGE-IPQELGQVTSLTIN-LD 603

Query: 294 QNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVL 353
            +++    NI   P   S+L  L S           LDLSSN+L G + ++L +L+ L  
Sbjct: 604 LSYNTFTGNI---PETFSDLTQLQS-----------LDLSSNSLHGDI-KVLGSLTSLAS 648

Query: 354 LNL-YNHFDGEVPTKGVFNNKTRISLAGNGKLCGGFDGL 391
           LN+  N+F G +P+   F   +  S   N  LC   DG+
Sbjct: 649 LNISCNNFSGPIPSTPFFKTISTTSYLQNTNLCHSLDGI 687

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  126 bits (316), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 104/318 (32%), Positives = 158/318 (49%), Gaps = 29/318 (9%)

Query: 66  TCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANR 125
           T A+L  ++++ N + G+IP + GNL+ L+ L+L  N   G IP  +   S L+      
Sbjct: 214 TLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYD 273

Query: 126 NILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPG 185
           N L G+IPAE+GNL +L+ L     KLT  +P+S+  L+       + N+  G I E  G
Sbjct: 274 NQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIG 333

Query: 186 QLRSLFYLNVGGNQFSGMF-LPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIA 244
            L SL  L +  N F+G F   + NL +L ++ +  N ++G LP  +G  L NLR +   
Sbjct: 334 FLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGL-LTNLRNLSAH 392

Query: 245 LNNFTGPLPDSFSNASNRERLELSYNQFRG---KSIWRSAATSYSQRLNDDDQNHHGRQQ 301
            N  TGP+P S SN +  + L+LS+NQ  G   +   R   T  S           GR  
Sbjct: 393 DNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFISI----------GRNH 442

Query: 302 NICYLPTGISNLVNLDSLAT-------------DSLKSIEELDLSSNNLSGQLPRLLVNL 348
               +P  I N  NL++L+                L+ +  L +S N+L+G +PR + NL
Sbjct: 443 FTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNL 502

Query: 349 SFLVLLNLY-NHFDGEVP 365
             L +L L+ N F G +P
Sbjct: 503 KDLNILYLHSNGFTGRIP 520

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  124 bits (312), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 157/313 (50%), Gaps = 21/313 (6%)

Query: 68  ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNI 127
            +L+ + +A   + G IP++LG LVR++ LIL +N   G IP  L   S L +F A  N+
Sbjct: 167 VNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENM 226

Query: 128 LAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQL 187
           L G IPAE+G L  LE L+     LTG++P+ +  +S         N   G IP+S   L
Sbjct: 227 LNGTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADL 286

Query: 188 RSLFYLNVGGNQFSGMF-LPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALN 246
            +L  L++  N  +G      +N+S L  + L +N L+G+LP  I +   NL ++V++  
Sbjct: 287 GNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGT 346

Query: 247 NFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYL 306
             +G +P   S   + ++L+LS N   G     S   +  + +   D   H         
Sbjct: 347 QLSGEIPVELSKCQSLKQLDLSNNSLAG-----SIPEALFELVELTDLYLHNNTLEGTLS 401

Query: 307 PTGISNLVNLDSLA-------------TDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVL 353
           P+ ISNL NL  L                +L+ +E L L  N  SG++P+ + N + L +
Sbjct: 402 PS-ISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKM 460

Query: 354 LNLY-NHFDGEVP 365
           ++++ NHF+GE+P
Sbjct: 461 IDMFGNHFEGEIP 473

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  124 bits (311), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 105/342 (30%), Positives = 159/342 (46%), Gaps = 71/342 (20%)

Query: 68  ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNI 127
           + L + +++ N + GEIP ELG+L  L+ L L  N  +G+IP+ +   +K+       N+
Sbjct: 142 SKLEYFDLSINQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNL 201

Query: 128 LAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQL 187
           L G IP+  GNL KL  L   +  L+G +P+ I NL +  E   +RNN  GKIP S G L
Sbjct: 202 LTGPIPSSFGNLTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNL 261

Query: 188 RSLFYLNVGGNQFSGMFLP-VYNLSSLEMIYLHDNR------------------------ 222
           +++  LN+  NQ SG   P + N+++L+ + LH N+                        
Sbjct: 262 KNVTLLNMFENQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQ 321

Query: 223 LNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAA 282
           LNG++PP +G ++ ++  + I+ N  TGP+PDSF   +  E L L  NQ  G        
Sbjct: 322 LNGSIPPELG-EMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQLSGP------- 373

Query: 283 TSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLP 342
                                  +P GI+N   L  L  D           +NN +G LP
Sbjct: 374 -----------------------IPPGIANSTELTVLQLD-----------TNNFTGFLP 399

Query: 343 RLLVNLSFLVLLNL-YNHFDGEVPTKGVFNNKT--RISLAGN 381
             +     L  L L  NHF+G VP K + + K+  R+   GN
Sbjct: 400 DTICRGGKLENLTLDDNHFEGPVP-KSLRDCKSLIRVRFKGN 440

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  124 bits (311), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 105/329 (31%), Positives = 151/329 (45%), Gaps = 23/329 (6%)

Query: 69  SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNIL 128
           SL+ + +  N + G IP ELG L ++ ++  + N  SG IP  LS  S+L L +  +N L
Sbjct: 302 SLKKLYLYQNQLNGTIPKELGKLSKVMEIDFSENLLSGEIPVELSKISELRLLYLFQNKL 361

Query: 129 AGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLR 188
            G IP E+  L  L KL   +  LTG +P   QNL+S  +     N+  G IP+  G   
Sbjct: 362 TGIIPNELSKLRNLAKLDLSINSLTGPIPPGFQNLTSMRQLQLFHNSLSGVIPQGLGLYS 421

Query: 189 SLFYLNVGGNQFSGMFLP-VYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNN 247
            L+ ++   NQ SG   P +   S+L ++ L  NR+ GN+PP +  +  +L ++ +  N 
Sbjct: 422 PLWVVDFSENQLSGKIPPFICQQSNLILLNLGSNRIFGNIPPGV-LRCKSLLQLRVVGNR 480

Query: 248 FTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLP 307
            TG  P       N   +EL  N+F G            QRL      H    Q    LP
Sbjct: 481 LTGQFPTELCKLVNLSAIELDQNRFSGPLPPEIGTCQKLQRL------HLAANQFSSNLP 534

Query: 308 TGISNLVNLDSLATDS-------------LKSIEELDLSSNNLSGQLPRLLVNLSFLVLL 354
             IS L NL +    S              K ++ LDLS N+  G LP  L +L  L +L
Sbjct: 535 NEISKLSNLVTFNVSSNSLTGPIPSEIANCKMLQRLDLSRNSFIGSLPPELGSLHQLEIL 594

Query: 355 NL-YNHFDGEVP-TKGVFNNKTRISLAGN 381
            L  N F G +P T G   + T + + GN
Sbjct: 595 RLSENRFSGNIPFTIGNLTHLTELQMGGN 623

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  124 bits (310), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 116/414 (28%), Positives = 179/414 (43%), Gaps = 53/414 (12%)

Query: 13  LSLRLWCTTTTTIINANETDRLALLAIKSQLHDPLEVTSSLTN-SVNLCEWTGVTCASLR 71
           L++ + C+ +  ++ +   +   LL  K+ L+D     +S      N C WTG+ C  LR
Sbjct: 8   LAIVILCSFSFILVRSLNEEGRVLLEFKAFLNDSNGYLASWNQLDSNPCNWTGIACTHLR 67

Query: 72  FI---------------------------NIADNGVQGEIPNELGNLVRLEKLILANNSF 104
            +                           N++ N + G IP +L     LE L L  N F
Sbjct: 68  TVTSVDLNGMNLSGTLSPLICKLHGLRKLNVSTNFISGPIPQDLSLCRSLEVLDLCTNRF 127

Query: 105 SGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLS 164
            G IP  L++   L   +   N L G IP +IGNL  L++L      LTG +P S+  L 
Sbjct: 128 HGVIPIQLTMIITLKKLYLCENYLFGSIPRQIGNLSSLQELVIYSNNLTGVIPPSMAKLR 187

Query: 165 SHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLP--VYNLSSLEMIYLHDNR 222
                 + RN F G IP       SL  L +  N   G  LP  +  L +L  + L  NR
Sbjct: 188 QLRIIRAGRNGFSGVIPSEISGCESLKVLGLAENLLEGS-LPKQLEKLQNLTDLILWQNR 246

Query: 223 LNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAA 282
           L+G +PP +G  +  L  + +  N FTG +P      +  +RL L  NQ  G+ I R   
Sbjct: 247 LSGEIPPSVG-NISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGE-IPREIG 304

Query: 283 TSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSL-------------ATDSLKSIEE 329
                 L D  +      Q   ++P    +++NL  L                 L  +E+
Sbjct: 305 N-----LIDAAEIDFSENQLTGFIPKEFGHILNLKLLHLFENILLGPIPRELGELTLLEK 359

Query: 330 LDLSSNNLSGQLPRLLVNLSFLVLLNLY-NHFDGEVPT-KGVFNNKTRISLAGN 381
           LDLS N L+G +P+ L  L +LV L L+ N  +G++P   G ++N + + ++ N
Sbjct: 360 LDLSINRLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSAN 413

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  123 bits (308), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 120/399 (30%), Positives = 175/399 (43%), Gaps = 79/399 (19%)

Query: 30  ETDRLALLAIKSQLHDPLEVTSSLTN--------SVNLCEWTGVTC-------------- 67
           +  R ALL  + +   P+  +  + N        S + C W GVTC              
Sbjct: 36  DDQRDALLEFRGEF--PINASWHIMNQWRGPWNKSTDCCLWNGVTCNDKSGQVISLDIPN 93

Query: 68  ----------------ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTN 111
                             LR +++ +  + GEIP+ LGNL  L  + L  N F G IP +
Sbjct: 94  TFLNNYLKTNSSLFKLQYLRHLDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKFVGEIPAS 153

Query: 112 LSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADS 171
           +   ++L       N+L GEIP+ +GNL +L  L     +L G++P SI +L        
Sbjct: 154 IGNLNQLRHLILANNVLTGEIPSSLGNLSRLVNLELFSNRLVGKIPDSIGDLKQLRNLSL 213

Query: 172 NRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMF-LPVYNLSSLEMIYLHDNRLNGNLPPV 230
             NN  G+IP S G L +L +L +  NQ  G     + NL  L ++   +N L+GN+ P+
Sbjct: 214 ASNNLIGEIPSSLGNLSNLVHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNI-PI 272

Query: 231 IGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRG------------KSIW 278
             A L  L   V++ NNFT   P   S   N E  ++SYN F G            +SI+
Sbjct: 273 SFANLTKLSIFVLSSNNFTSTFPFDMSIFHNLEYFDVSYNSFSGPFPKSLLLIPSLESIY 332

Query: 279 ----------RSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIE 328
                       A TS S +L D      GR +    +P  IS L+NL           E
Sbjct: 333 LQENQFTGPIEFANTSSSTKLQDLIL---GRNRLHGPIPESISRLLNL-----------E 378

Query: 329 ELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPT 366
           ELD+S NN +G +P  +  L  L+ L+L  N+ +GEVP 
Sbjct: 379 ELDISHNNFTGAIPPTISKLVNLLHLDLSKNNLEGEVPA 417

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	409
255577438	1028	receptor-kinase, putative [Ricinus commu	0.850	0.338	0.365	3e-50
224081190	1011	predicted protein [Populus trichocarpa]	0.833	0.337	0.344	9e-46
359482058	1040	PREDICTED: probable LRR receptor-like se	0.816	0.321	0.374	8e-43
224116462	444	predicted protein [Populus trichocarpa]	0.757	0.698	0.347	1e-41
449440267	938	PREDICTED: probable LRR receptor-like se	0.860	0.375	0.353	1e-41
449483707	938	PREDICTED: probable LRR receptor-like se	0.860	0.375	0.353	2e-41
297815936	970	hypothetical protein ARALYDRAFT_323370 [	0.826	0.348	0.344	2e-41
224119102	1007	predicted protein [Populus trichocarpa]	0.819	0.332	0.354	2e-41
224097748	1032	predicted protein [Populus trichocarpa]	0.828	0.328	0.334	3e-41
224135241	985	predicted protein [Populus trichocarpa]	0.804	0.334	0.314	8e-41

>gi|255577438|ref|XP_002529598.1| receptor-kinase, putative [Ricinus communis] gi|223530931|gb|EEF32790.1| receptor-kinase, putative [Ricinus communis]

 Score =  205 bits (522), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 146/400 (36%), Positives = 216/400 (54%), Gaps = 52/400 (13%)

Query: 15  LRLWCTTTTTIINANETDRLALLAIKSQL-HDPLEVTSSLTNSVNLCEWTGVTCAS---- 69
           ++L C++ +     NETDRL+LLA K+ +  DPL + SS   S++ C+W+G+TC S    
Sbjct: 20  IQLSCSSLSG--RGNETDRLSLLAFKAHITDDPLHILSSWNESLHFCKWSGITCGSRHQR 77

Query: 70  ------------------------LRFINIADNGVQGEIPNELGNLVRLEKLILANNSFS 105
                                   LR +N+ +N +   IP E+G L RL  LIL  NSFS
Sbjct: 78  VIEIDLESSRLSGSLTAFIGNLSFLRVLNLQNNSLSHYIPQEIGRLFRLRTLILRRNSFS 137

Query: 106 GTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSS 165
           G IP N+S  S L+     RN L G++PAE+ +L KL+   F +  LTG++  S  NLSS
Sbjct: 138 GEIPVNISYCSNLLTLRLGRNNLTGKLPAELKSLSKLQMFEFEINYLTGEISPSFSNLSS 197

Query: 166 HLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLP-VYNLSSLEMIYLHDNRLN 224
                  RNNF G+IP S GQL+SL   ++GG+ FSG+  P ++NLSSL ++ +  N+L+
Sbjct: 198 LEIIYGTRNNFHGEIPNSIGQLKSLQTFSLGGSNFSGVIPPSIFNLSSLTILSVPINQLH 257

Query: 225 GNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGK--SIWRSAA 282
           GNLPP +G  LP L  + +  N F+G +P + SNASN   L++S N F GK  S+ R   
Sbjct: 258 GNLPPDLGQSLPKLEVLRLYANKFSGSIPPTISNASNLVALDVSQNNFTGKVPSLARLHN 317

Query: 283 TSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLP 342
            SY     ++  N  G   ++ +L T ++N  NL+ LA           ++ NNL G LP
Sbjct: 318 LSYIGIHKNNLGN--GEDDDLSFLYT-LANNTNLEILA-----------ITENNLGGVLP 363

Query: 343 RLLVNLSFLVLLNLY--NHFDGEVPTKGVFNNKTRISLAG 380
            +L N S  ++   +  N   G +P++   +N  R+   G
Sbjct: 364 EMLSNFSTKLVHMAFGRNKIRGRIPSE--IDNLIRLEALG 401

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081190|ref|XP_002306327.1| predicted protein [Populus trichocarpa] gi|222855776|gb|EEE93323.1| predicted protein [Populus trichocarpa]

 Score =  190 bits (483), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 139/403 (34%), Positives = 199/403 (49%), Gaps = 62/403 (15%)

Query: 10  FSALSLRLWCTTTTTIIN---------ANETDRLALLAIKSQLHDPLEVTSSLTNSVNLC 60
            S +S  ++C     II           NETDRL+LLA K+Q+ DPL+  SS   S + C
Sbjct: 3   LSGMSSCIFCPLLLLIIQLSFSFSLHEGNETDRLSLLAFKAQITDPLDALSSWNASTHFC 62

Query: 61  EWTGVTCAS----------------------------LRFINIADNGVQGEIPNELGNLV 92
           +W+GV C                              LR +N+  N    +IP ELG L 
Sbjct: 63  KWSGVICGHRHQRIVELNLQSSQLTGNLSPHIGNLSFLRVLNLEGNYFSRDIPQELGRLF 122

Query: 93  RLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKL 152
           RL++L+L NN+FSG IP N+S  S L++     N L G+IPA++G+L KL         L
Sbjct: 123 RLQRLVLGNNTFSGEIPVNISSCSNLLVLHLGSNNLTGKIPAQLGSLSKLGAFVLQGNNL 182

Query: 153 TGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLP--VYNL 210
            G +P+S  NLSS       +N   G IPES G L+ L Y  V  N  SG  +P  + N+
Sbjct: 183 VGDIPSSFGNLSSVQNFFWTKNYLRGGIPESLGNLKRLKYFAVAENDLSGT-IPSSICNI 241

Query: 211 SSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYN 270
           SSL  + L  N+L+G+LPP +G  LPNL  +VI  N+  GP+P + SNAS    ++LSYN
Sbjct: 242 SSLAYVSLGQNQLHGSLPPDLGLNLPNLAYLVINFNHLNGPIPATLSNASKIFLVDLSYN 301

Query: 271 QFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEEL 330
              GK    ++     + L   +   +G + ++ +L T ++N  NL+SL           
Sbjct: 302 NLTGKIPDLASLPDLQKLLVHHNDLGNGEEDDLSFLYT-LANSTNLESLG---------- 350

Query: 331 DLSSNNLSGQLPRLLVNLSFLVLLNL------YNHFDGEVPTK 367
            ++ NN  G LP ++ N S     NL       N   G +PT+
Sbjct: 351 -INDNNFGGVLPEIVSNFS----TNLKGITFGRNQIHGSIPTE 388

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482058|ref|XP_002274540.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera]

 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 145/387 (37%), Positives = 202/387 (52%), Gaps = 53/387 (13%)

Query: 29  NETDRLALLAIKSQL-HDPLEVTSSLTNSVNLCEWTGVTCAS------------------ 69
           NETDRLALLAIK+Q+  DPL +T+S  +SV+ C WTGVTC                    
Sbjct: 37  NETDRLALLAIKAQITQDPLGITTSWNDSVHFCNWTGVTCGHRHQRVNTLNLNSLHLVGS 96

Query: 70  ----------LRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLM 119
                     L  +N+  N   G+IP ELG L RL  L L NNSFSG IP NLS  S L+
Sbjct: 97  LSPSIGNLTFLTGLNLELNNFHGQIPQELGRLSRLRALNLTNNSFSGEIPANLSRCSNLV 156

Query: 120 LFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGK 179
            F    N L G IP+ +G+  K+ ++      LTG +P S+ NL+S        N+  G 
Sbjct: 157 YFRLGFNNLIGRIPSWLGSYPKVVRMQLHYNNLTGPVPDSLGNLTSIKSLSFAVNHLEGS 216

Query: 180 IPESPGQLRSLFYLNVGGNQFSGMFLP--VYNLSSLEMIYLHDNRLNGNLPPVIGAKLPN 237
           IP++ GQL++L ++ +G N FSG+ +P  VYN+SSLE+  L  N+L G+LP  +   LPN
Sbjct: 217 IPQALGQLQTLEFMGLGMNGFSGI-IPSSVYNMSSLEVFSLPYNKLYGSLPWDLAFTLPN 275

Query: 238 LRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGK---------SIWR--SAATSYS 286
           L+ + I  N+FTG LP S SNASN    +++ + F GK         ++W    A+    
Sbjct: 276 LQVLNIGNNDFTGSLPSSLSNASNLLEFDITMSNFTGKVSIDFGGMPNLWGLFLASNPLG 335

Query: 287 QRLNDD----DQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLP 342
           +   DD    +     R   +  L       V  +S+A  S + + +L L +N LSG +P
Sbjct: 336 KGEADDLSFLNSLMKCRALKVLDLSGSQFGGVLPNSIANLSTQ-LMKLKLDNNQLSGTIP 394

Query: 343 RL---LVNLSFLVLLNLYNHFDGEVPT 366
                LVNL+ L+L N  N F G +P 
Sbjct: 395 PGIGNLVNLTDLILAN--NDFTGSIPV 419

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116462|ref|XP_002331903.1| predicted protein [Populus trichocarpa] gi|222874575|gb|EEF11706.1| predicted protein [Populus trichocarpa]

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 122/351 (34%), Positives = 180/351 (51%), Gaps = 41/351 (11%)

Query: 28  ANETDRLALLAIKSQLHDPLEVTSSLTNSVNLCEWTGVTCAS------------------ 69
            +E D+L+LLA K+Q+ DP    SS   SV+ C+W+GVTC                    
Sbjct: 26  GSEIDKLSLLAFKAQISDPPTKLSSWNESVHFCQWSGVTCGRRHQRVIELDLHSSQLVGS 85

Query: 70  ----------LRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLM 119
                     L  + + +N     IP E+  LVRL+ LIL NNSF+G IP N+S  S L+
Sbjct: 86  LSPHIGNLSFLSLLRLENNSFTNTIPREIDRLVRLQTLILGNNSFTGEIPANISHCSNLL 145

Query: 120 LFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGK 179
                 N L G +PA +G+L KL+  SF    L G++P S +NLSS +E D   NN  G 
Sbjct: 146 SLNLEGNNLTGNLPAGLGSLSKLQVFSFRKNNLGGKIPPSFENLSSIIEIDGTLNNLQGG 205

Query: 180 IPESPGQLRSLFYLNVGGNQFSGMF-LPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNL 238
           IP S G+L++L + ++G N  SG   L +YN+SSL  + L  N+ +G LPP +G  LPNL
Sbjct: 206 IPSSIGKLKTLSFFSLGSNNLSGTIPLSLYNISSLLHLSLAHNQFHGTLPPNMGLTLPNL 265

Query: 239 RKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHG 298
           + + I  N  +G +P +  NA+    + LSYN+F GK    ++  +            +G
Sbjct: 266 QYLGIHDNRLSGLIPATLINATKFTGIYLSYNEFTGKVPTLASMPNLRVLSMQAIGLGNG 325

Query: 299 RQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLS 349
              ++ +L T +SN   L++LA           ++ NN  G LP ++ N S
Sbjct: 326 EDDDLSFLYT-LSNSSKLEALA-----------INENNFGGVLPDIISNFS 364

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440267|ref|XP_004137906.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cucumis sativus]

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 145/410 (35%), Positives = 206/410 (50%), Gaps = 58/410 (14%)

Query: 24  TIINANETDRLALLAIKSQ-LHDPLEVTSSLTNSVNLCEWTGVTCAS----LRFINIADN 78
           T I+  E+D LALL +KS+ L+DPL++ SS  +S +LC+WTG+TC S    +  +++  +
Sbjct: 63  TPISGIESDHLALLDLKSRVLNDPLKIMSSWNDSRHLCDWTGITCNSTIGRVMVLDLEAH 122

Query: 79  GVQGEIPNELGN------------------------LVRLEKLILANNSFSGTIPTNLSL 114
            + G IPN LGN                        L++L  L L+ N+FSG IP N+S 
Sbjct: 123 KLSGSIPNSLGNMTHLIAIRLGDNRLHGHIPQEFGQLLQLRHLNLSYNNFSGEIPGNISH 182

Query: 115 RSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRN 174
            ++L+      N L G+IP ++  L KL++LSF    L G +P+ I N SS L      N
Sbjct: 183 CTQLVHLELGNNGLEGQIPHQLFTLTKLKRLSFPNNNLIGTIPSWIGNFSSLLHLSVAYN 242

Query: 175 NFGGKIPESPGQLRSLFYLNVGGNQFSGMF-LPVYNLSSLEMIYLHDNRLNGNLPPVIGA 233
           NF G IP   G LR L +  +  N  +G   L +YN++SL ++ L  NRL G LPP IG 
Sbjct: 243 NFQGNIPNELGHLRRLEFFAITANYLTGTVPLSLYNITSLTLMSLTANRLQGTLPPNIGY 302

Query: 234 KLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLN-DD 292
            LPNL+  V   NNFTG +P SF+N S    L+L  N F G       +    +RLN +D
Sbjct: 303 TLPNLQIFVGGGNNFTGSIPTSFANISGLRELDLPSNSFVGMLPNDLGSLKDLERLNFED 362

Query: 293 DQNHHGRQQNICYLPTGISNLVNLDSLATDSL-----------------KSIEELDLSSN 335
           +    GR  ++ +    IS+L N  SL    L                   +  L L +N
Sbjct: 363 NILGTGRVGDLNF----ISSLANCTSLKVLGLSWNHFGGVLPSSIGNLSSQLTALTLGAN 418

Query: 336 NLSGQLPRL---LVNLSFLVLLNLYNHFDGEVPTK-GVFNNKTRISLAGN 381
            LSG +P     L+NL  LV+    N+ +G VP   G   N  ++ L GN
Sbjct: 419 MLSGSIPSAIANLINLQHLVVGQ--NYLNGSVPPNIGNLQNLVKLFLQGN 466

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449483707|ref|XP_004156666.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cucumis sativus]

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 145/410 (35%), Positives = 206/410 (50%), Gaps = 58/410 (14%)

Query: 24  TIINANETDRLALLAIKSQ-LHDPLEVTSSLTNSVNLCEWTGVTCAS----LRFINIADN 78
           T I+  E+D LALL +KS+ L+DPL++ SS  +S +LC+WTG+TC S    +  +++  +
Sbjct: 63  TPISGIESDHLALLDLKSRILNDPLKIMSSWNDSRHLCDWTGITCNSTIGRVMVLDLEAH 122

Query: 79  GVQGEIPNELGN------------------------LVRLEKLILANNSFSGTIPTNLSL 114
            + G IPN LGN                        L++L  L L+ N+FSG IP N+S 
Sbjct: 123 KLSGSIPNSLGNMTHLIAIRLGDNRLHGHIPQEFGQLLQLRHLNLSYNNFSGEIPGNISH 182

Query: 115 RSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRN 174
            ++L+      N L G+IP ++  L KL++LSF    L G +P+ I N SS L      N
Sbjct: 183 CTQLVHLELGNNGLEGQIPHQLFTLTKLKRLSFPNNNLIGTIPSWIGNFSSLLHLSVAYN 242

Query: 175 NFGGKIPESPGQLRSLFYLNVGGNQFSGMF-LPVYNLSSLEMIYLHDNRLNGNLPPVIGA 233
           NF G IP   G LR L +  +  N  +G   L +YN++SL ++ L  NRL G LPP IG 
Sbjct: 243 NFQGNIPNELGHLRRLEFFAITANYLTGTVPLSLYNITSLTLMSLTANRLQGTLPPNIGY 302

Query: 234 KLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLN-DD 292
            LPNL+  V   NNFTG +P SF+N S    L+L  N F G       +    +RLN +D
Sbjct: 303 TLPNLQIFVGGGNNFTGSIPTSFANISGLRELDLPSNSFVGMLPNDLGSLKDLERLNFED 362

Query: 293 DQNHHGRQQNICYLPTGISNLVNLDSLATDSL-----------------KSIEELDLSSN 335
           +    GR  ++ +    IS+L N  SL    L                   +  L L +N
Sbjct: 363 NILGTGRVGDLNF----ISSLANCTSLKVLGLSWNHFGGVLPSSIGNLSSQLTALTLGAN 418

Query: 336 NLSGQLPRL---LVNLSFLVLLNLYNHFDGEVPTK-GVFNNKTRISLAGN 381
            LSG +P     L+NL  LV+    N+ +G VP   G   N  ++ L GN
Sbjct: 419 MLSGSIPSAIANLINLQHLVVGQ--NYLNGSVPPNIGNLQNLVKLFLQGN 466

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297815936|ref|XP_002875851.1| hypothetical protein ARALYDRAFT_323370 [Arabidopsis lyrata subsp. lyrata] gi|297321689|gb|EFH52110.1| hypothetical protein ARALYDRAFT_323370 [Arabidopsis lyrata subsp. lyrata]

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 139/403 (34%), Positives = 202/403 (50%), Gaps = 65/403 (16%)

Query: 28  ANETDRLALLAIKSQLHDPLEVT-SSLTNSVNLCEWTGVTCA------------------ 68
            +ETDR ALL IKSQ+ +   V  SS  +S  LC W GVTC                   
Sbjct: 9   TDETDRQALLEIKSQVSEEKRVVLSSWNHSFPLCNWIGVTCGRKHKRVTSLDLRGLQLGG 68

Query: 69  -------SLRFI---NIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKL 118
                  +L F+   N++ N   G IP E+GNL RLE L ++ N   G IPT+LS  S+L
Sbjct: 69  VISPSIGNLSFLISLNLSGNSFGGTIPQEVGNLFRLEYLDMSLNFLGGGIPTSLSNCSRL 128

Query: 119 MLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGG 178
           +  +   N L G +P+E+G+L KL  L+F    L G LPA++ N++S +  +   NN  G
Sbjct: 129 LYLYLFSNHLGGSVPSELGSLTKLVSLNFGRNNLQGTLPATLGNMTSLVYFNLGINNIEG 188

Query: 179 KIPESPGQLRSLFYLNVGGNQFSGMFLP-VYNLSSLEMIYLHDNRLNGNLPPVIGAKLPN 237
            IP+   ++  L  + + GN FSG+F P +YN+SSLE++Y+  N   GNL P  G  LPN
Sbjct: 189 GIPDGFARMTQLVGIELSGNNFSGVFPPAIYNVSSLELLYIFSNGFWGNLRPDFGNLLPN 248

Query: 238 LRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYS--QRLNDDDQN 295
           L+ + I  N FTG +P +  N SN +   +  N+F G   +  A T+++  Q L+  D  
Sbjct: 249 LKALTIGDNYFTGTIPTTLPNISNLQDFGIEANKFTGNLEFIGALTNFTRLQVLDVGDNR 308

Query: 296 HHGR--------QQNICYL-----------PTGISNLVNLDSLATDS------------- 323
             G           N+ YL           P  I NL++L SL  +              
Sbjct: 309 FGGDLPTSIANLSTNLIYLSFQKNRISGNIPHDIGNLISLQSLGLNENLLTGPLPTSLGK 368

Query: 324 LKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYNH-FDGEVP 365
           L  + EL + SN +SG++P  + N++ L  L L N+ F+G VP
Sbjct: 369 LLGLGELSVHSNRMSGEIPSSIGNITMLQRLYLNNNSFEGTVP 411

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119102|ref|XP_002331325.1| predicted protein [Populus trichocarpa] gi|222873908|gb|EEF11039.1| predicted protein [Populus trichocarpa]

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 134/378 (35%), Positives = 185/378 (48%), Gaps = 43/378 (11%)

Query: 3   LPSVLQLFSALSLRLWCTTTTTI-INANETDRLALLAIKSQL-HDPLEVTSSLTNSVNLC 60
           +PS +    A  L L C T++ + I  NETDRLALL  KS++ HDPL +     +S++ C
Sbjct: 5   VPSPVFCPHAFVLLLLCFTSSALSIGRNETDRLALLDFKSKITHDPLGIMRLWNSSIHFC 64

Query: 61  EWTGVTCAS----------------------------LRFINIADNGVQGEIPNELGNLV 92
            W GVTC+                             LR + +  N    EIP ++G+L 
Sbjct: 65  HWFGVTCSQKHQRVAVLDLQSLKLSGSVSPYIGNLSFLRNLYLQHNSFSHEIPAQIGHLH 124

Query: 93  RLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKL 152
           RL+ L L NNSF+G IP ++S    L+    + N L GEIP E G+  KL  L      L
Sbjct: 125 RLQILALHNNSFTGEIPASMSSSYNLVSLILDNNKLTGEIPKEFGSFLKLTDLYIDDNNL 184

Query: 153 TGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLP-VYNLS 211
            G +P S+ N+SS  E   + NN  G +P +  +L +L  L++  N+FSG   P + NLS
Sbjct: 185 VGTIPPSLGNISSLQELWLDDNNLFGNLPATLSKLVNLRVLSLFNNRFSGTIPPSMLNLS 244

Query: 212 SLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQ 271
           SL    +  N   GNLPP +G  LPNL    I  N FTG +P S SN SN E LEL+ N+
Sbjct: 245 SLRTFQVGLNHFQGNLPPDLGISLPNLEFFSIYSNQFTGSVPVSISNLSNLEMLELNLNK 304

Query: 272 FRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELD 331
            RGK                 +    G   ++ +L + ++N  NL           EEL 
Sbjct: 305 LRGKMPSLEKLQRLLSITIASNNLGSGEANDLSFL-SSLTNATNL-----------EELI 352

Query: 332 LSSNNLSGQLPRLLVNLS 349
           ++ NN  GQLP  + NLS
Sbjct: 353 ITQNNFQGQLPPQISNLS 370

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097748|ref|XP_002311065.1| predicted protein [Populus trichocarpa] gi|222850885|gb|EEE88432.1| predicted protein [Populus trichocarpa]

 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 144/431 (33%), Positives = 204/431 (47%), Gaps = 92/431 (21%)

Query: 28  ANETDRLALLAIKSQLH-DPLEVTSSLTNSVNLCEWTGVTCAS----------------- 69
            NETDRL+LLA K Q+  DPL   SS  +S + CEW+GVTC                   
Sbjct: 30  GNETDRLSLLAFKDQIEADPLGTLSSWNDSSHFCEWSGVTCGRRHQRVVELDLNSCKLVG 89

Query: 70  -----------LRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKL 118
                      LR +N+ +N     IP E+G L RL+KL+L NN+F+G IP N+S  S L
Sbjct: 90  SLSPHIGNLSFLRILNLNNNSFSHTIPQEIGRLFRLQKLLLRNNTFTGEIPVNISRCSNL 149

Query: 119 MLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGG 178
           +  +   N L G +P E+G+L K++   F +  L G++P S  NLSS        NN  G
Sbjct: 150 LHLYLGGNELTGGLPGELGSLSKMQWFVFEINNLVGEIPISFGNLSSVEAIFGGANNLRG 209

Query: 179 KIPESPGQLRSLFYLNVGGNQFSGMFLP-VYNLSSLEMIYLHDNRLNGNLPPVIGAKLPN 237
            IP++ GQL+ L  L    N  SG   P +YNLSSL  + L  N+L+G+LP  +G  LPN
Sbjct: 210 GIPKNFGQLKRLKNLVFNINNLSGTIPPSIYNLSSLTTLSLSSNQLHGSLPSDLGLTLPN 269

Query: 238 LRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKS--------------------- 276
           L  + +  N+F+G +P S  NASN   ++LS N+F GK                      
Sbjct: 270 LETLGLHTNHFSGLIPASLFNASNITVIDLSSNKFTGKVPDLGHMPKLRRLVIQTNDLGN 329

Query: 277 --------IWRSAATSYSQRLNDDDQN-------------------HHGRQQNICYLPTG 309
                   ++  A  +  Q L  +D N                     GR Q    +PT 
Sbjct: 330 NEDDDLGFLYPLANNTNLQVLGINDNNLGGALPEKISNFSIKLIHMTFGRNQIRGIIPTD 389

Query: 310 ISNLVNLDSLATD-------------SLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL 356
           I NLVNL +L  +              L+++  L L SN +SG +P  L N + L+ L L
Sbjct: 390 IGNLVNLQTLGLEMNQLTGTIPSSIGKLRNLRVLSLRSNKISGSIPSSLGNCTSLINLEL 449

Query: 357 Y-NHFDGEVPT 366
           + N+ +G +P+
Sbjct: 450 HANNLNGSIPS 460

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135241|ref|XP_002327600.1| predicted protein [Populus trichocarpa] gi|222836154|gb|EEE74575.1| predicted protein [Populus trichocarpa]

 Score =  174 bits (441), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 132/420 (31%), Positives = 194/420 (46%), Gaps = 91/420 (21%)

Query: 37  LAIKSQLHDPLEVTSSLTNSVNLCEWTGVTCAS--------------------------- 69
           L+ K+Q+ DP E  SS   S+  C+W+GVTC                             
Sbjct: 12  LSFKAQISDPPEKLSSWNESLPFCQWSGVTCGRRHQRVIELDLHSSQLVGSLSPHIGNLS 71

Query: 70  -LRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNIL 128
            LR + + +N     IP E+  LVRL+ LIL NNSF+G IP N+S  S L+      N L
Sbjct: 72  FLRLLRLENNSFTNTIPQEIDRLVRLQTLILGNNSFTGEIPANISHCSNLLSLNLEGNNL 131

Query: 129 AGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLR 188
            G +PA +G+L KL+  SF    L G++P S +NLSS +E D   NN  G IP S G+L+
Sbjct: 132 TGNLPAGLGSLSKLQVFSFRKNNLGGKIPPSFENLSSIIEIDGTLNNLQGGIPSSIGKLK 191

Query: 189 SLFYLNVGGNQFSGMF-LPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNN 247
           +L + ++G N  SG   L +YN+SSL  + L  N+ +G LPP +G  LPNL+ + I  N 
Sbjct: 192 TLSFFSLGSNNLSGTIPLSLYNISSLLHLSLAHNQFHGTLPPNMGLTLPNLQYLGIHDNR 251

Query: 248 FTGPLPDSFSNASNRERLELSYNQFRGK----------SIWRSAATSYSQRLNDD----- 292
            +G +P +  NA+    + LSYN+F GK           +    A       +DD     
Sbjct: 252 LSGLIPATLINATKFTGIYLSYNEFTGKVPTLASMPNLRVLSMQAIGLGNGEDDDLSFLY 311

Query: 293 ---------------------------------DQNHHGRQQNICYLPTGISNLVNLDSL 319
                                             Q   G  Q    +P GI NLV+LD+L
Sbjct: 312 TLSNSSKLEALAINENNFGGVLPDIISNFSTKLKQMTFGSNQIRGSIPDGIGNLVSLDTL 371

Query: 320 ATDS-------------LKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVP 365
             ++             L+++ +  L+ N LSG++P  L N++ L+ +N   N+  G +P
Sbjct: 372 GLEANHLTGSIPSSIGKLQNLADFFLNENKLSGRIPSSLGNITSLMQINFDQNNLQGSIP 431

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	409
TAIR|locus:2046525	1124	AT2G33170 [Arabidopsis thalian	0.726	0.264	0.305	1.6e-34
TAIR|locus:2075661	1025	AT3G47110 [Arabidopsis thalian	0.503	0.200	0.400	3.4e-33
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.501	0.198	0.393	9.3e-33
UNIPROTKB|O24435	813	O24435 "Receptor kinase-like p	0.897	0.451	0.311	6.5e-32
TAIR|locus:4515102753	598	AT1G73066 [Arabidopsis thalian	0.867	0.593	0.290	3.7e-31
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.655	0.280	0.325	1.1e-30
TAIR|locus:2005507	976	ER "ERECTA" [Arabidopsis thali	0.821	0.344	0.293	1.5e-30
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.652	0.283	0.324	2.7e-30
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.750	0.343	0.319	3e-30
TAIR|locus:2058598	773	AT2G23300 [Arabidopsis thalian	0.555	0.293	0.337	8.3e-30

TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 1.6e-34, Sum P(2) = 1.6e-34
 Identities = 95/311 (30%), Positives = 156/311 (50%)

Query:    41 SQLHDPLEVTSSLTNSVNLCEWTGVTCA---SLRFINIADNGVQGEIPNELGNLVRLEKL 97
             S   + L VTS   +S+NL      +     +L ++N+A N + G+IP E+GN  +LE +
Sbjct:    79 SSSSNSLVVTSLDLSSMNLSGIVSPSIGGLVNLVYLNLAYNALTGDIPREIGNCSKLEVM 138

Query:    98 ILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLP 157
              L NN F G+IP  ++  S+L  F    N L+G +P EIG+L+ LE+L      LTG LP
Sbjct:   139 FLNNNQFGGSIPVEINKLSQLRSFNICNNKLSGPLPEEIGDLYNLEELVAYTNNLTGPLP 198

Query:   158 ASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLP--VYNLSSLEM 215
              S+ NL+      + +N+F G IP   G+  +L  L +  N  SG  LP  +  L  L+ 
Sbjct:   199 RSLGNLNKLTTFRAGQNDFSGNIPTEIGKCLNLKLLGLAQNFISGE-LPKEIGMLVKLQE 257

Query:   216 IYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRG- 274
             + L  N+ +G +P  IG  L +L  + +  N+  GP+P    N  + ++L L  NQ  G 
Sbjct:   258 VILWQNKFSGFIPKDIG-NLTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGT 316

Query:   275 --KSIWRSAAT---SYSQRL-NDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIE 328
               K + + +      +S+ L + +      +   +  L    + L  +       L+++ 
Sbjct:   317 IPKELGKLSKVMEIDFSENLLSGEIPVELSKISELRLLYLFQNKLTGIIPNELSKLRNLA 376

Query:   329 ELDLSSNNLSG 339
             +LDLS N+L+G
Sbjct:   377 KLDLSINSLTG 387

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 3.4e-33, P = 3.4e-33
 Identities = 83/207 (40%), Positives = 122/207 (58%)

Query:    70 LRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILA 129
             LR +N+ADN   G IP+E+GNL RL+ L ++NN F G IP  LS  S L     + N L 
Sbjct:   107 LRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSLSTLDLSSNHLE 166

Query:   130 GEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRS 189
               +P E G+L KL  LS     LTG+ PAS+ NL+S    D   N   G+IP    +L+ 
Sbjct:   167 QGVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQIEGEIPGDIARLKQ 226

Query:   190 LFYLNVGGNQFSGMFLP-VYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNF 248
             + +  +  N+F+G+F P +YNLSSL  + +  N  +G L P  G+ LPNL+ + + +N+F
Sbjct:   227 MIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPDFGSLLPNLQILYMGINSF 286

Query:   249 TGPLPDSFSNASNRERLELSYNQFRGK 275
             TG +P++ SN S+  +L++  N   GK
Sbjct:   287 TGTIPETLSNISSLRQLDIPSNHLTGK 313

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 9.3e-33, P = 9.3e-33
 Identities = 81/206 (39%), Positives = 119/206 (57%)

Query:    70 LRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILA 129
             LR +N+ADN     IP ++G L RL+ L ++ N   G IP++LS  S+L     + N L 
Sbjct:    99 LRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSRLSTVDLSSNHLG 158

Query:   130 GEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRS 189
               +P+E+G+L KL  L      LTG  PAS+ NL+S  + D   N   G+IP+   +L  
Sbjct:   159 HGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMRGEIPDEVARLTQ 218

Query:   190 LFYLNVGGNQFSGMFLP-VYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNF 248
             + +  +  N FSG F P +YN+SSLE + L DN  +GNL    G  LPNLR++++  N F
Sbjct:   219 MVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLRADFGYLLPNLRRLLLGTNQF 278

Query:   249 TGPLPDSFSNASNRERLELSYNQFRG 274
             TG +P + +N S+ ER ++S N   G
Sbjct:   279 TGAIPKTLANISSLERFDISSNYLSG 304

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 359 (131.4 bits), Expect = 6.5e-32, P = 6.5e-32
 Identities = 121/389 (31%), Positives = 170/389 (43%)

Query:    32 DRLALLAIKSQL-HDPLEVTSSLTNSVN--LCEWTGVTCASL---RFINIA--DNGVQGE 83
             D LALL+ KS L +   +  +S   S +   C W GV C      R + +    + + G 
Sbjct:    34 DELALLSFKSSLLYQGGQSLASWNTSGHGQHCTWVGVVCGRRHPHRVVKLRLRSSNLAGI 93

Query:    84 IPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLE 143
             I   LGNL  L  L L++N  SG IP  LS  S+L     N N L+GEIPA +GNL  L 
Sbjct:    94 ISPSLGNLSFLRTLQLSDNHLSGKIPQELSRLSRLQQLVLNFNSLSGEIPAALGNLTSLS 153

Query:   144 KLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGM 203
              L      L+G +P+S+  L+   +     N   G IP S GQLR L +L++  N  SG 
Sbjct:   154 VLELTNNTLSGAIPSSLGKLTGLTDLALAENTLSGSIPSSFGQLRRLSFLSLAFNNLSGA 213

Query:   204 FL-PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNR 262
                P++N+SSL +  +  N+L+G LP    + LP+L+++ +  N F G +P S  NASN 
Sbjct:   214 IPDPIWNISSLTIFEVISNKLSGTLPTNAFSNLPSLQEVYMYYNQFHGRIPASIGNASNI 273

Query:   263 ERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATD 322
                 +  N F G            QRL   +      + N     T ++N  NL  +   
Sbjct:   274 SIFTIGLNSFSGVVPPEIGRMRNLQRLELPETLSEAEETNDWKFMTALTNCSNLQEVELG 333

Query:   323 SLKSIEELDLSSNNLSGQXXXXXXXXXXXXXXXXYNHFDGEVPTK-GVFNNKTRISLAGN 381
               K    L  S +NLS                   N   G +P   G   N   +SLA N
Sbjct:   334 GCKFGGVLPDSVSNLSSSLVSLSIRD---------NKISGSLPRDIGNLVNLQYLSLANN 384

Query:   382 ---GKLCGGFDGLHSPSCHSKDQEKSLYS 407
                G L   F  L +    + D  K + S
Sbjct:   385 SLTGSLPSSFSKLKNLRRLTVDNNKLIGS 413

GO:0004672 "protein kinase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:4515102753 AT1G73066 [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 3.7e-31, P = 3.7e-31
 Identities = 110/379 (29%), Positives = 178/379 (46%)

Query:     7 LQLFSALSLR-LWCXXXXXXXNANETDRLALLAIKSQLHD-PLEVTSSL-TNSVNL--CE 61
             L LF  L L  L+        +   +D L LL+++  L   P E+TS+  TN+     C 
Sbjct:     4 LGLFQILLLFCLFVSVRIVSVSCLNSDGLTLLSLRKHLDKVPPELTSTWKTNASEATPCN 63

Query:    62 WTGVTC---ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKL 118
             W G+ C     +  +N   +GV G++  E+G L  LE L +++N+FSG IP++L   S L
Sbjct:    64 WFGIICDDSKKVTSLNFTGSGVSGQLGPEIGQLKSLEILDMSSNNFSGIIPSSLGNCSSL 123

Query:   119 MLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLS--SHLEADSNRNNF 176
             +    + N  +G++P  +G+L  L  L      LTG+LP S+  +   ++L  +   NN 
Sbjct:   124 VYIDLSENSFSGKVPDTLGSLKSLADLYLYSNSLTGELPKSLFRIPVLNYLHVE--HNNL 181

Query:   177 GGKIPESPGQLRSLFYLNVGGNQFSGMFLP--VYNLSSLEMIYLHDNRLNGNLPPVIGAK 234
              G IP++ G+ + L +L +  NQF+G  +P  + N S LE++YLH N+L G+LP  +   
Sbjct:   182 TGLIPQNVGEAKELLHLRLFDNQFTGT-IPESIGNCSKLEILYLHKNKLVGSLPASLNL- 239

Query:   235 LPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRG---KSIWR----SAATSYSQ 287
             L +L  + +A N+  G +    +   N   L+LSYN+F G     +       A    S 
Sbjct:   240 LESLTDLFVANNSLRGTVQFGSTKCRNLVTLDLSYNEFEGGVPPELGNCSSLDALVIVSG 299

Query:   288 RLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQXXXXXXX 347
              L+    +  G  +N+  L    + L         +  S+  L L+ N L G        
Sbjct:   300 NLSGTIPSSLGMLKNLTILNLSENRLSGSIPAELGNCSSLNLLKLNDNQLVGGIPSALGK 359

Query:   348 XXXXXXXXXY-NHFDGEVP 365
                      + N F GE+P
Sbjct:   360 LRKLESLELFENRFSGEIP 378

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 1.1e-30, Sum P(2) = 1.1e-30
 Identities = 91/280 (32%), Positives = 138/280 (49%)

Query:    70 LRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILA 129
             L +++++ N   G+I N +GNL RL  L L +N FSG  P+++   S L     + N   
Sbjct:   147 LTYLDLSSNHFSGQILNSIGNLSRLTYLNLFDNQFSGQAPSSICNLSHLTFLDLSYNRFF 206

Query:   130 GEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRS 189
             G+ P+ IG L  L  LS    K +GQ+P+SI NLS+    D + NNF G+IP   G L  
Sbjct:   207 GQFPSSIGGLSHLTTLSLFSNKFSGQIPSSIGNLSNLTTLDLSNNNFSGQIPSFIGNLSQ 266

Query:   190 LFYLNVGGNQFSGMFLPVY-NLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNF 248
             L +L +  N F G     + NL+ L  +Y+ DN+L+GN P V+   L  L  + ++ N F
Sbjct:   267 LTFLGLFSNNFVGEIPSSFGNLNQLTRLYVDDNKLSGNFPNVL-LNLTGLSLLSLSNNKF 325

Query:   249 TGPLPDSFSNASNRERLELSYNQFRG---KSIWRSAATSYSQRLNDDDQN---HHGR--- 299
             TG LP + ++ SN    + S N F G     ++   + +Y  RLN +        G    
Sbjct:   326 TGTLPPNITSLSNLMDFDASDNAFTGTFPSFLFTIPSLTYI-RLNGNQLKGTLEFGNISS 384

Query:   300 QQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSG 339
               N+  L  G +N +     +   L  +  LD+S  N  G
Sbjct:   385 PSNLYELDIGNNNFIGPIPSSISKLVKLFRLDISHLNTQG 424

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2005507 ER "ERECTA" [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 1.5e-30, P = 1.5e-30
 Identities = 105/358 (29%), Positives = 172/358 (48%)

Query:    51 SSLTNSVNLCEWTGVTCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPT 110
             +SLT S+   E  G  C + + ++++ N + GEIP ++G L ++  L L  N  SG IP+
Sbjct:   222 NSLTGSIP--ETIG-NCTAFQVLDLSYNQLTGEIPFDIGFL-QVATLSLQGNQLSGKIPS 277

Query:   111 NLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEAD 170
              + L   L +   + N+L+G IP  +GNL   EKL     KLTG +P  + N+S     +
Sbjct:   278 VIGLMQALAVLDLSGNLLSGSIPPILGNLTFTEKLYLHSNKLTGSIPPELGNMSKLHYLE 337

Query:   171 SNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVY--NLSSLEMIYLHDNRLNGNLP 228
              N N+  G IP   G+L  LF LNV  N   G  +P +  + ++L  + +H N+ +G +P
Sbjct:   338 LNDNHLTGHIPPELGKLTDLFDLNVANNDLEGP-IPDHLSSCTNLNSLNVHGNKFSGTIP 396

Query:   229 PVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQR 288
                  KL ++  + ++ NN  GP+P   S   N + L+LS N+  G  I  S+       
Sbjct:   397 RAF-QKLESMTYLNLSSNNIKGPIPVELSRIGNLDTLDLSNNKING--IIPSSLGDLEHL 453

Query:   289 LNDD-DQNH--------HGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSG 339
             L  +  +NH         G  ++I  +    +++        + L++I  L L +NNL+G
Sbjct:   454 LKMNLSRNHITGVVPGDFGNLRSIMEIDLSNNDISGPIPEELNQLQNIILLRLENNNLTG 513

Query:   340 QXXXXXXXXXXXXXXXXYNHFDGEVPTKGVFNNKTRISLAGNGKLCGGFDGLHSPSCH 397
                              +N+  G++P    F+  +  S  GN  LCG +  L+SP CH
Sbjct:   514 NVGSLANCLSLTVLNVSHNNLVGDIPKNNNFSRFSPDSFIGNPGLCGSW--LNSP-CH 568

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0048281 "inflorescence morphogenesis" evidence=IMP

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0010103 "stomatal complex morphogenesis" evidence=RCA;IMP

GO:0001558 "regulation of cell growth" evidence=IGI;IMP

GO:0009965 "leaf morphogenesis" evidence=RCA;IMP

GO:0010148 "transpiration" evidence=IMP

GO:0030155 "regulation of cell adhesion" evidence=IMP

GO:0051302 "regulation of cell division" evidence=IGI;IMP

GO:0009664 "plant-type cell wall organization" evidence=IMP

GO:0008356 "asymmetric cell division" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0031540 "regulation of anthocyanin biosynthetic process" evidence=RCA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=ISS

GO:2000027 "regulation of organ morphogenesis" evidence=IMP

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 2.7e-30, Sum P(2) = 2.7e-30
 Identities = 90/277 (32%), Positives = 139/277 (50%)

Query:    69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNIL 128
             +LR +++  N + GEIP+ +GNL  L  L L+ N F G IP+++   S+L     + N  
Sbjct:   126 NLRVLDLTQNDLDGEIPSSIGNLSHLTSLHLSYNQFLGLIPSSIENLSRLTSLHLSSNQF 185

Query:   129 AGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLR 188
             +G+IP+ IGNL  L  L     + +GQ+P+SI NLS+        N+F G+IP S G L 
Sbjct:   186 SGQIPSSIGNLSHLTSLELSSNQFSGQIPSSIGNLSNLTFLSLPSNDFFGQIPSSIGNLA 245

Query:   189 SLFYLNVGGNQFSGMFLPVY-NLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNN 247
              L YL +  N F G     + NL+ L ++ +  N+L+GN+P  +   L  L  ++++ N 
Sbjct:   246 RLTYLYLSYNNFVGEIPSSFGNLNQLIVLQVDSNKLSGNVPISL-LNLTRLSALLLSHNQ 304

Query:   248 FTGPLPDSFSNASNRERLELSYNQFRGK--SIWRSAATSYSQRLNDDDQN---HHGR--- 299
             FTG +P++ S  SN    E S N F G   S   +        L+D+  N   H G    
Sbjct:   305 FTGTIPNNISLLSNLMDFEASNNAFTGTLPSSLFNIPPLIRLDLSDNQLNGTLHFGNISS 364

Query:   300 QQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNN 336
               N+ YL  G +N +     +     ++   DLS  N
Sbjct:   365 PSNLQYLIIGSNNFIGTIPRSLSRFVNLTLFDLSHLN 401

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 3.0e-30, Sum P(2) = 3.0e-30
 Identities = 106/332 (31%), Positives = 154/332 (46%)

Query:    13 LSLRLWCXXXXXXXNANETDR-LALLAIKSQLHDPLE--VTSSLTN-----SVNLC--EW 62
             + L L C       ++N + R L  L    + H+  E  +TSS+ N     S++L    +
Sbjct:    35 IELNLSCSSLHGRFHSNSSIRNLHFLTTLDRSHNDFEGQITSSIENLSHLTSLDLSYNRF 94

Query:    63 TGVTCAS------LRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRS 116
             +G    S      L  ++++ N   G+IP+ +GNL  L  L L+ N F G IP+++   S
Sbjct:    95 SGQILNSIGNLSRLTSLDLSFNQFSGQIPSSIGNLSHLTFLGLSGNRFFGQIPSSIGNLS 154

Query:   117 KLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNF 176
              L     + N   G+ P+ IG L  L  L     K +GQ+P+SI NLS  +    + NNF
Sbjct:   155 HLTFLGLSGNRFFGQFPSSIGGLSNLTNLHLSYNKYSGQIPSSIGNLSQLIVLYLSVNNF 214

Query:   177 GGKIPESPGQLRSLFYLNVGGNQFSGMFLPVY-NLSSLEMIYLHDNRLNGNLPPVIGAKL 235
              G+IP S G L  L  L+V  N+  G F  V  NL+ L ++ L +N+  G LPP I   L
Sbjct:   215 YGEIPSSFGNLNQLTRLDVSFNKLGGNFPNVLLNLTGLSVVSLSNNKFTGTLPPNI-TSL 273

Query:   236 PNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGK-SIWRSAATSYSQRLNDDDQ 294
              NL     + N FTG  P       +   L LS NQ +G       ++ S  Q LN    
Sbjct:   274 SNLMAFYASDNAFTGTFPSFLFIIPSLTYLGLSGNQLKGTLEFGNISSPSNLQYLNIGSN 333

Query:   295 NHHGRQQNICYLPTGISNLVNLDSLATDSLKS 326
             N  G       +P+ IS L+NL  L    L +
Sbjct:   334 NFIGP------IPSSISKLINLQELGISHLNT 359

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2058598 AT2G23300 [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 8.3e-30, P = 8.3e-30
 Identities = 79/234 (33%), Positives = 127/234 (54%)

Query:    27 NANETDRLALLAIK-SQLHDPLEVTSSLT-NSVNLCEWTGVTCAS-LRFINIA--DNGVQ 81
             +A  +D + LL+ K S L DPL +  S   +  N C W GV C +  R + ++  ++ + 
Sbjct:    29 SALNSDGVLLLSFKYSVLLDPLSLLQSWNYDHDNPCSWRGVLCNNDSRVVTLSLPNSNLV 88

Query:    82 GEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFK 141
             G IP++LG L  L+ L L+NNS +G++P       KL     + N+++GEIP  IG L  
Sbjct:    89 GSIPSDLGFLQNLQSLNLSNNSLNGSLPVEFFAADKLRFLDLSNNLISGEIPVSIGGLHN 148

Query:   142 LEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFS 201
             L+ L+      TG+LPA++ +L S  E     N F G+ P   G  RS+ YL++  N  +
Sbjct:   149 LQTLNLSDNIFTGKLPANLASLGSLTEVSLKNNYFSGEFPG--GGWRSVQYLDISSNLIN 206

Query:   202 GMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDS 255
             G   P ++  +L  + +  N+++G +PP +GA  P    +  + NN TG +PDS
Sbjct:   207 GSLPPDFSGDNLRYLNVSYNQISGEIPPNVGAGFPQNATVDFSFNNLTGSIPDS 260

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	409
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-33
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-30
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-27
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-08
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	6e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  131 bits (330), Expect = 5e-33
 Identities = 115/378 (30%), Positives = 183/378 (48%), Gaps = 57/378 (15%)

Query: 25  IINANETDRLALLAIKSQLHDPLEVTSSLTNSVNLCEWTGVTC---ASLRFINIADNGVQ 81
           +++A E +   LL+ KS ++DPL+  S+  +S ++C W G+TC   + +  I+++   + 
Sbjct: 25  MLHAEELE--LLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNIS 82

Query: 82  GEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFF-ANRNILAGEIPAEIGNLF 140
           G+I + +  L  ++ + L+NN  SG IP ++   S  + +   + N   G IP   G++ 
Sbjct: 83  GKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIP 140

Query: 141 KLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQF 200
            LE L      L+G++P  I + SS    D   N   GKIP S   L SL +L +  NQ 
Sbjct: 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL 200

Query: 201 SGMFLPVY--NLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSN 258
            G  +P     + SL+ IYL  N L+G +P  IG  L +L  + +  NN TGP+P S  N
Sbjct: 201 VGQ-IPRELGQMKSLKWIYLGYNNLSGEIPYEIG-GLTSLNHLDLVYNNLTGPIPSSLGN 258

Query: 259 ASNRERLELSYNQFRG---KSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVN 315
             N + L L  N+  G    SI+                               +  L++
Sbjct: 259 LKNLQYLFLYQNKLSGPIPPSIF------------------------------SLQKLIS 288

Query: 316 LD----SLATD------SLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLY-NHFDGEV 364
           LD    SL+ +       L+++E L L SNN +G++P  L +L  L +L L+ N F GE+
Sbjct: 289 LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI 348

Query: 365 PTK-GVFNNKTRISLAGN 381
           P   G  NN T + L+ N
Sbjct: 349 PKNLGKHNNLTVLDLSTN 366

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  123 bits (310), Expect = 2e-30
 Identities = 102/324 (31%), Positives = 160/324 (49%), Gaps = 27/324 (8%)

Query: 69  SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNIL 128
           +L  +++  N   G+IP  L +L RL+ L L +N FSG IP NL   + L +   + N L
Sbjct: 309 NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368

Query: 129 AGEIPAEI---GNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPG 185
            GEIP  +   GNLFKL   S     L G++P S+    S        N+F G++P    
Sbjct: 369 TGEIPEGLCSSGNLFKLILFSN---SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT 425

Query: 186 QLRSLFYLNVGGNQFSGMF-LPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIA 244
           +L  +++L++  N   G      +++ SL+M+ L  N+  G LP   G+K   L  + ++
Sbjct: 426 KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSK--RLENLDLS 483

Query: 245 LNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNIC 304
            N F+G +P    + S   +L+LS N+  G+        S  ++L   D +H+     I 
Sbjct: 484 RNQFSGAVPRKLGSLSELMQLKLSENKLSGEI---PDELSSCKKLVSLDLSHNQLSGQI- 539

Query: 305 YLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGE 363
             P   S +  L            +LDLS N LSG++P+ L N+  LV +N+ +NH  G 
Sbjct: 540 --PASFSEMPVLS-----------QLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGS 586

Query: 364 VPTKGVFNNKTRISLAGNGKLCGG 387
           +P+ G F      ++AGN  LCGG
Sbjct: 587 LPSTGAFLAINASAVAGNIDLCGG 610

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  114 bits (288), Expect = 1e-27
 Identities = 91/316 (28%), Positives = 142/316 (44%), Gaps = 48/316 (15%)

Query: 68  ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNI 127
           +SL+ +++  N + G+IPN L NL  LE L LA+N   G IP  L     L   +   N 
Sbjct: 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223

Query: 128 LAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQL 187
           L+GEIP EIG L  L  L      LTG +P+S+ NL +       +N   G IP S   L
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL 283

Query: 188 RSLFYLNVGGNQFSGMFLP--VYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIAL 245
           + L  L++  N  SG  +P  V  L +LE+++L  N   G +P  +   LP L+ + +  
Sbjct: 284 QKLISLDLSDNSLSGE-IPELVIQLQNLEILHLFSNNFTGKIPVAL-TSLPRLQVLQLWS 341

Query: 246 NNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICY 305
           N F+G +P +    +N   L+LS N   G+                              
Sbjct: 342 NKFSGEIPKNLGKHNNLTVLDLSTNNLTGE------------------------------ 371

Query: 306 LPTGISNLVNLDSLA--TDSL-----------KSIEELDLSSNNLSGQLPRLLVNLSFLV 352
           +P G+ +  NL  L   ++SL           +S+  + L  N+ SG+LP     L  + 
Sbjct: 372 IPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVY 431

Query: 353 LLNLY-NHFDGEVPTK 367
            L++  N+  G + ++
Sbjct: 432 FLDISNNNLQGRINSR 447

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 73.7 bits (181), Expect = 5e-14
 Identities = 55/194 (28%), Positives = 94/194 (48%), Gaps = 13/194 (6%)

Query: 66  TCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANR 125
            C SLR + + DN   GE+P+E   L  +  L ++NN+  G I +       L +    R
Sbjct: 402 ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461

Query: 126 NILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPG 185
           N   G +P   G+  +LE L     + +G +P  + +LS  ++   + N   G+IP+   
Sbjct: 462 NKFFGGLPDSFGSK-RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELS 520

Query: 186 QLRSLFYLNVGGNQFSGMF------LPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLR 239
             + L  L++  NQ SG        +PV  LS L++     N+L+G +P  +G  + +L 
Sbjct: 521 SCKKLVSLDLSHNQLSGQIPASFSEMPV--LSQLDLSQ---NQLSGEIPKNLG-NVESLV 574

Query: 240 KIVIALNNFTGPLP 253
           ++ I+ N+  G LP
Sbjct: 575 QVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.4 bits (144), Expect = 2e-09
 Identities = 28/68 (41%), Positives = 44/68 (64%)

Query: 70  LRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILA 129
           L+ IN++ N ++G IP  LG++  LE L L+ NSF+G+IP +L   + L +   N N L+
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 130 GEIPAEIG 137
           G +PA +G
Sbjct: 504 GRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 8/113 (7%)

Query: 62  WTGVTC-----ASLRFI---NIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLS 113
           W+G  C         FI    + + G++G IPN++  L  L+ + L+ NS  G IP +L 
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG 463

Query: 114 LRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSH 166
             + L +   + N   G IP  +G L  L  L+     L+G++PA++     H
Sbjct: 464 SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLH 516

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.7 bits (129), Expect = 9e-08
 Identities = 30/75 (40%), Positives = 43/75 (57%)

Query: 128 LAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQL 187
           L G IP +I  L  L+ ++     + G +P S+ +++S    D + N+F G IPES GQL
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 188 RSLFYLNVGGNQFSG 202
            SL  LN+ GN  SG
Sbjct: 490 TSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 42.7 bits (101), Expect = 6e-06
 Identities = 21/41 (51%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 29 NETDRLALLAIKSQL-HDPLEVTSS-LTNSVNLCEWTGVTC 67
             DR ALLA KS L  DP    SS   +S + C WTGVTC
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTC 41

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.1 bits (99), Expect = 5e-04
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 4/87 (4%)

Query: 172 NRNNFG--GKIPESPGQLRSLFYLNVGGNQFSGMFLPVY-NLSSLEMIYLHDNRLNGNLP 228
             +N G  G IP    +LR L  +N+ GN   G   P   +++SLE++ L  N  NG++P
Sbjct: 424 GLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP 483

Query: 229 PVIGAKLPNLRKIVIALNNFTGPLPDS 255
             +G +L +LR + +  N+ +G +P +
Sbjct: 484 ESLG-QLTSLRILNLNGNSLSGRVPAA 509

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.7 bits (98), Expect = 6e-04
 Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 17/109 (15%)

Query: 305 YLPTGISNLVNLDS--LATDSLK-----------SIEELDLSSNNLSGQLPRLLVNLSFL 351
           ++P  IS L +L S  L+ +S++           S+E LDLS N+ +G +P  L  L+ L
Sbjct: 433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492

Query: 352 VLLNLY-NHFDGEVPTK--GVFNNKTRISLAGNGKLCGGFDGLHSPSCH 397
            +LNL  N   G VP    G   ++   +   N  LC G  GL +   H
Sbjct: 493 RILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC-GIPGLRACGPH 540

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 54/198 (27%), Positives = 82/198 (41%), Gaps = 6/198 (3%)

Query: 75  IADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPA 134
              +     +P+ L  L+ L+ L  +  S S     NL     L     N N L   I  
Sbjct: 53  NLSSNTLLLLPSSLSRLLSLDLLSPSGIS-SLDGSENLLNLLPLPSLDLNLNRLRSNIS- 110

Query: 135 EIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLN 194
           E+  L  L  L      +T  +P  I  L S+L+     +N    +P     L +L  L+
Sbjct: 111 ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLD 169

Query: 195 VGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPD 254
           +  N  S +   + NLS+L  + L  N+++ +LPP I   L +  + +   NN    L  
Sbjct: 170 LSFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIE--LLSALEELDLSNNSIIELLS 226

Query: 255 SFSNASNRERLELSYNQF 272
           S SN  N   LELS N+ 
Sbjct: 227 SLSNLKNLSGLELSNNKL 244

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	409
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.97
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.95
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.95
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.94
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.88
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.85
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.83
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.82
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.81
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.79
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.77
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.75
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.71
PLN03150	623	hypothetical protein; Provisional	99.62
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.51
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.44
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.38
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.3
PLN03150	623	hypothetical protein; Provisional	99.23
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.18
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.12
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.11
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.09
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.07
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.05
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.02
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.01
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.98
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.92
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.84
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.83
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.8
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.77
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.56
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.53
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.46
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.27
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.23
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.14
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.14
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.13
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.12
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.09
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.96
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.93
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.9
PRK15386	426	type III secretion protein GogB; Provisional	97.83
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.83
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.8
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.72
PRK15386	426	type III secretion protein GogB; Provisional	97.59
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.55
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.37
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.35
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.09
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.95
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.78
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.59
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.73
KOG4341	483	consensus F-box protein containing LRR [General fu	95.63
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.17
KOG4341	483	consensus F-box protein containing LRR [General fu	94.7
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.15
KOG4308	478	consensus LRR-containing protein [Function unknown	93.97
KOG1947	482	consensus Leucine rich repeat proteins, some prote	93.64
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.61
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.64
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.5
smart00370	26	LRR Leucine-rich repeats, outliers.	90.56
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.56
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.09
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.36
smart00370	26	LRR Leucine-rich repeats, outliers.	89.36
KOG4308	478	consensus LRR-containing protein [Function unknown	87.92

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.2e-43  Score=380.18  Aligned_cols=328  Identities=32%  Similarity=0.494  Sum_probs=257.4

Q ss_pred             CHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCceeeecC---CCcEEEecCCCCccccCccccCCCCCCEEEccCCccc
Q 048551           29 NETDRLALLAIKSQLHDPLEVTSSLTNSVNLCEWTGVTCA---SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFS  105 (409)
Q Consensus        29 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~~~g~~c~---~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  105 (409)
                      .++|+.+|+.||+++.+|...+.+|....++|.|.|++|+   +++.|++++|++++.++..+..+++|++|+|++|+++
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~  106 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS  106 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC
Confidence            3489999999999998887778899888899999999996   6899999999999999999999999999999999999


Q ss_pred             ccCCcccc-CCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCC
Q 048551          106 GTIPTNLS-LRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESP  184 (409)
Q Consensus       106 ~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~  184 (409)
                      +.+|..+. .+++|++|++++|.+++.+|.  +.+++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|..+
T Consensus       107 ~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~  184 (968)
T PLN00113        107 GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL  184 (968)
T ss_pred             CcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh
Confidence            88887754 899999999999999877774  457888888888888888888888888888888888888888888888


Q ss_pred             CCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCC
Q 048551          185 GQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRE  263 (409)
Q Consensus       185 ~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  263 (409)
                      .++++|++|++++|.+.+..+ .+.++++|+.|++++|.+++.+|..+. .+++|++|++++|.+++.+|..++++++|+
T Consensus       185 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  263 (968)
T PLN00113        185 TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG-GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ  263 (968)
T ss_pred             hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh-cCCCCCEEECcCceeccccChhHhCCCCCC
Confidence            888888888888888887766 778888888888888888888888877 788888888888888888888888888888


Q ss_pred             EEEcccCcCccccchhhh-hcccCcEEecccCCccccccccccCChhccCCCCCCccc-------------cCCCCCCCE
Q 048551          264 RLELSYNQFRGKSIWRSA-ATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLA-------------TDSLKSIEE  329 (409)
Q Consensus       264 ~L~Ls~N~l~~~~~~~~~-l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~-------------~~~l~~L~~  329 (409)
                      .|++++|++.+.....+. +.++ +.|++++|.+.      +.+|..+..+++|+.|+             +..+++|+.
T Consensus       264 ~L~L~~n~l~~~~p~~l~~l~~L-~~L~Ls~n~l~------~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  336 (968)
T PLN00113        264 YLFLYQNKLSGPIPPSIFSLQKL-ISLDLSDNSLS------GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV  336 (968)
T ss_pred             EEECcCCeeeccCchhHhhccCc-CEEECcCCeec------cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCE
Confidence            888888888765433333 4455 77778777777      45555555555555554             233455555


Q ss_pred             EECcCCccccccchhhhcCCCCcEEEe-eccceecCCC
Q 048551          330 LDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPT  366 (409)
Q Consensus       330 L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~  366 (409)
                      |++++|++++.+|..+..+++|+.|++ +|++.+.+|.
T Consensus       337 L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~  374 (968)
T PLN00113        337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE  374 (968)
T ss_pred             EECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh
Confidence            555555555555555555555555555 5555544443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=7.7e-37  Score=329.46  Aligned_cols=319  Identities=31%  Similarity=0.472  Sum_probs=181.6

Q ss_pred             ecCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEE
Q 048551           66 TCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKL  145 (409)
Q Consensus        66 ~c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  145 (409)
                      .+.+|++|++++|++++.+|.  +.+++|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|..++++++|++|
T Consensus       116 ~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  193 (968)
T PLN00113        116 TSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL  193 (968)
T ss_pred             cCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCee
Confidence            344677777777777666653  345666666666666666666666666666666666666666666666666666666


Q ss_pred             EeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCc
Q 048551          146 SFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLN  224 (409)
Q Consensus       146 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~  224 (409)
                      ++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+..+ .+.++++|+.|++++|.++
T Consensus       194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  273 (968)
T PLN00113        194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS  273 (968)
T ss_pred             eccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee
Confidence            666666666666666666666666666666666666666666666666666666665555 5566666666666666666


Q ss_pred             ccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh-hcccCcEEecccCCcccccc--
Q 048551          225 GNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA-ATSYSQRLNDDDQNHHGRQQ--  301 (409)
Q Consensus       225 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-l~~l~~~L~l~~n~l~~~~~--  301 (409)
                      +.+|..+. .+++|++|++++|.+.+.+|..+.++++|+.|++++|.+++.....+. ++++ +.|++++|.+.+..+  
T Consensus       274 ~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L-~~L~L~~n~l~~~~p~~  351 (968)
T PLN00113        274 GPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRL-QVLQLWSNKFSGEIPKN  351 (968)
T ss_pred             ccCchhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCC-CEEECcCCCCcCcCChH
Confidence            55665555 556666666666666655565555666666666666655544322222 2333 444444444442000  


Q ss_pred             -----cc-----------ccCChhccCCCCCCccc-------------cCCCCCCCEEECcCCccccccchhhhcCCCCc
Q 048551          302 -----NI-----------CYLPTGISNLVNLDSLA-------------TDSLKSIEELDLSSNNLSGQLPRLLVNLSFLV  352 (409)
Q Consensus       302 -----~l-----------~~ip~~~~~l~~L~~L~-------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  352 (409)
                           .+           +.+|..+..+++|+.++             +..+++|+.|++++|++++.+|..+..++.|+
T Consensus       352 l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~  431 (968)
T PLN00113        352 LGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVY  431 (968)
T ss_pred             HhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCC
Confidence                 00           23444444444444443             22344555555555555555555555555555


Q ss_pred             EEEe-eccceecCCCC-CCCCCCCeecccCCCCceecCC
Q 048551          353 LLNL-YNHFDGEVPTK-GVFNNKTRISLAGNGKLCGGFD  389 (409)
Q Consensus       353 ~L~L-~n~l~~~~p~~-~~~~~L~~L~l~~Np~l~g~~p  389 (409)
                      .|++ +|++.+.+|.. ..+++|+.|++++| .+.|.+|
T Consensus       432 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-~~~~~~p  469 (968)
T PLN00113        432 FLDISNNNLQGRINSRKWDMPSLQMLSLARN-KFFGGLP  469 (968)
T ss_pred             EEECcCCcccCccChhhccCCCCcEEECcCc-eeeeecC
Confidence            5555 55555544433 34455555555555 3444444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.97  E-value=2.9e-32  Score=257.45  Aligned_cols=305  Identities=24%  Similarity=0.259  Sum_probs=161.7

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCC-cccCCCCCCcEEEe
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIP-AEIGNLFKLEKLSF  147 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~L  147 (409)
                      +++.+.+.+|.++ .+|.......+|++|+|.+|.|+..-.++++.++.|++|||+.|.|+ .+| ..|..-.++++|+|
T Consensus       103 nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~L  180 (873)
T KOG4194|consen  103 NLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNL  180 (873)
T ss_pred             cceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEee
Confidence            5666666666666 66655555555666666666666544555555555555555555555 232 23444445555555


Q ss_pred             ecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEE------------------------ccCCcCccc
Q 048551          148 CVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLN------------------------VGGNQFSGM  203 (409)
Q Consensus       148 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~------------------------l~~n~l~~~  203 (409)
                      ++|.|+..-...|.++.+|..|.++.|+++...+..|.++++|+.|+                        +..|.+...
T Consensus       181 a~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL  260 (873)
T KOG4194|consen  181 ASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKL  260 (873)
T ss_pred             ccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccc
Confidence            55555544444455555555555555555533333444444444444                        444444444


Q ss_pred             Cc-ccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh-
Q 048551          204 FL-PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA-  281 (409)
Q Consensus       204 ~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-  281 (409)
                      .. .|..+.++++|+++.|+++..-..+++ +++.|+.|++++|.|..+-++.+.-+++|++|+|++|+++..+...+. 
T Consensus       261 ~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf-gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~  339 (873)
T KOG4194|consen  261 DDGAFYGLEKMEHLNLETNRLQAVNEGWLF-GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV  339 (873)
T ss_pred             cCcceeeecccceeecccchhhhhhccccc-ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHH
Confidence            44 455556666666666666533334455 566666666666666666666666666666666666666665544444 


Q ss_pred             hcccCcEEecccCCccccccccccCCh-hccCCCCCCccc----------------cCCCCCCCEEECcCCccccccchh
Q 048551          282 ATSYSQRLNDDDQNHHGRQQNICYLPT-GISNLVNLDSLA----------------TDSLKSIEELDLSSNNLSGQLPRL  344 (409)
Q Consensus       282 l~~l~~~L~l~~n~l~~~~~~l~~ip~-~~~~l~~L~~L~----------------~~~l~~L~~L~Ls~N~l~~~~p~~  344 (409)
                      +..+ ++|+|+.|++.       .+.. .+..+++|++||                |.++++|+.|++.+|+|..+.-..
T Consensus       340 L~~L-e~LnLs~Nsi~-------~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krA  411 (873)
T KOG4194|consen  340 LSQL-EELNLSHNSID-------HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRA  411 (873)
T ss_pred             HHHh-hhhcccccchH-------HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhh
Confidence            3333 66666666655       3322 333444444444                444555555555555555333345


Q ss_pred             hhcCCCCcEEEe-eccceecCCCC-CCCCCCCeecccCCCCce
Q 048551          345 LVNLSFLVLLNL-YNHFDGEVPTK-GVFNNKTRISLAGNGKLC  385 (409)
Q Consensus       345 ~~~l~~L~~L~L-~n~l~~~~p~~-~~~~~L~~L~l~~Np~l~  385 (409)
                      |..+..|+.||| +|-+...-|.. ..+ .|++|-+..-..+|
T Consensus       412 fsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflC  453 (873)
T KOG4194|consen  412 FSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLC  453 (873)
T ss_pred             hccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEE
Confidence            555555555555 44444433332 223 44444443332444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.97  E-value=7.6e-32  Score=254.59  Aligned_cols=305  Identities=19%  Similarity=0.216  Sum_probs=241.9

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC  148 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  148 (409)
                      ..+.||+++|.+...-+..|.++++|+.+++.+|.++ .+|.......+|+.|+|.+|.|+..-.+.+..++.|+.|||+
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS  157 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence            5678999999999888888999999999999999999 788766667779999999999997667778899999999999


Q ss_pred             cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccC
Q 048551          149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNL  227 (409)
Q Consensus       149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~  227 (409)
                      .|.++..--.+|..-.++++|++++|+|+..-...|..+.+|..|.++.|+++..++ .|.++++|+.|++..|++. .+
T Consensus       158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir-iv  236 (873)
T KOG4194|consen  158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR-IV  236 (873)
T ss_pred             hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee-ee
Confidence            999985444567777899999999999998888889999999999999999999887 7778999999999888876 32


Q ss_pred             chHHhh------------------------CCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccc--hhhh
Q 048551          228 PPVIGA------------------------KLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSI--WRSA  281 (409)
Q Consensus       228 p~~~~~------------------------~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~  281 (409)
                      ...-|+                        .+.++++|+|+.|+++..-..++-+++.|+.|++|+|.|..+..  |.|.
T Consensus       237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft  316 (873)
T KOG4194|consen  237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT  316 (873)
T ss_pred             hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence            111122                        45556666666666665555566677777777777777776653  3333


Q ss_pred             hcccCcEEecccCCccccccccccCCh-hccCCCCCCccc-------------cCCCCCCCEEECcCCccccccch---h
Q 048551          282 ATSYSQRLNDDDQNHHGRQQNICYLPT-GISNLVNLDSLA-------------TDSLKSIEELDLSSNNLSGQLPR---L  344 (409)
Q Consensus       282 l~~l~~~L~l~~n~l~~~~~~l~~ip~-~~~~l~~L~~L~-------------~~~l~~L~~L~Ls~N~l~~~~p~---~  344 (409)
                       .++ ++|+|+.|+++       ++++ .+..+..|++|.             |.++.+|+.|||++|.|+..+.+   .
T Consensus       317 -qkL-~~LdLs~N~i~-------~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~  387 (873)
T KOG4194|consen  317 -QKL-KELDLSSNRIT-------RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVA  387 (873)
T ss_pred             -ccc-eeEeccccccc-------cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhh
Confidence             223 88888888887       5554 566667777776             77899999999999999866543   5


Q ss_pred             hhcCCCCcEEEe-eccceecCCCC--CCCCCCCeecccCCCCce
Q 048551          345 LVNLSFLVLLNL-YNHFDGEVPTK--GVFNNKTRISLAGNGKLC  385 (409)
Q Consensus       345 ~~~l~~L~~L~L-~n~l~~~~p~~--~~~~~L~~L~l~~Np~l~  385 (409)
                      |..+++|+.|++ +|++. .||..  ..++.|+.|+|.+|+.-+
T Consensus       388 f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaS  430 (873)
T KOG4194|consen  388 FNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIAS  430 (873)
T ss_pred             hccchhhhheeecCceee-ecchhhhccCcccceecCCCCccee
Confidence            778999999999 77765 55554  789999999999996444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.95  E-value=5.9e-31  Score=250.35  Aligned_cols=301  Identities=23%  Similarity=0.338  Sum_probs=203.4

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccc-cCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSG-TIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF  147 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  147 (409)
                      ++++|++++|++. .+-..++.++.|+.++++.|++.. -+|..+..+..|..||+++|+++ ..|..+..-+++-+|+|
T Consensus        56 kLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNL  133 (1255)
T KOG0444|consen   56 KLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNL  133 (1255)
T ss_pred             hhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEc
Confidence            4455555555554 344444555555555555555532 24555555555555555555555 55555555555555555


Q ss_pred             ecccccccCCc-cccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCc-
Q 048551          148 CVIKLTGQLPA-SIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLN-  224 (409)
Q Consensus       148 ~~n~l~~~~p~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~-  224 (409)
                      ++|+|. .+|. -|.+++.|-.||+++|++. .+|..+..+..|++|++++|.+..... .+-.+++|+.|.+++.+-+ 
T Consensus       134 S~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl  211 (1255)
T KOG0444|consen  134 SYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL  211 (1255)
T ss_pred             ccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh
Confidence            555555 3332 3345555555555555554 444455555555666666655543322 3334455555566554322 


Q ss_pred             ccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccc
Q 048551          225 GNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNIC  304 (409)
Q Consensus       225 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~  304 (409)
                      ..+|..+- .+.+|..+|++.|.+. ..|+.+-++++|+.|+||+|+|+......-...++ ++|+++.|.++       
T Consensus       212 ~N~Ptsld-~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~l-EtLNlSrNQLt-------  281 (1255)
T KOG0444|consen  212 DNIPTSLD-DLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENL-ETLNLSRNQLT-------  281 (1255)
T ss_pred             hcCCCchh-hhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhh-hhhccccchhc-------
Confidence            35788886 7899999999999998 88999999999999999999998765222112223 89999999998       


Q ss_pred             cCChhccCCCCCCccc--------------cCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-C
Q 048551          305 YLPTGISNLVNLDSLA--------------TDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-G  368 (409)
Q Consensus       305 ~ip~~~~~l~~L~~L~--------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~  368 (409)
                      .+|..++.+++|+.|.              ++.+.+|+.+..++|++. .+|..++.+..|+.|.| .|.++ .+|.. .
T Consensus       282 ~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIH  359 (1255)
T KOG0444|consen  282 VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIH  359 (1255)
T ss_pred             cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhh
Confidence            8999999998888877              556678999999999998 89999999999999999 67776 45655 7


Q ss_pred             CCCCCCeecccCCCCce
Q 048551          369 VFNNKTRISLAGNGKLC  385 (409)
Q Consensus       369 ~~~~L~~L~l~~Np~l~  385 (409)
                      -++.|+.||+..||.+-
T Consensus       360 lL~~l~vLDlreNpnLV  376 (1255)
T KOG0444|consen  360 LLPDLKVLDLRENPNLV  376 (1255)
T ss_pred             hcCCcceeeccCCcCcc
Confidence            88999999999999885

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.95  E-value=2.6e-30  Score=246.03  Aligned_cols=311  Identities=22%  Similarity=0.288  Sum_probs=169.6

Q ss_pred             CcEEEecCCCCc-cccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551           70 LRFINIADNGVQ-GEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC  148 (409)
Q Consensus        70 l~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  148 (409)
                      ++-+|+++|.++ +.+|.....|++++-|.|...++. .+|+.++.+.+|++|.+++|++. .+-..+..++.|+.+++.
T Consensus         9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R   86 (1255)
T KOG0444|consen    9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVR   86 (1255)
T ss_pred             eecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhh
Confidence            344555555555 345555555555555555555555 45555555555555555555555 344444555555555555


Q ss_pred             cccccc-cCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCccc
Q 048551          149 VIKLTG-QLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGN  226 (409)
Q Consensus       149 ~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~  226 (409)
                      .|++.. -+|..+..+..|+.||+++|++. ..|..+..-+++-.|++++|++..++. -+.+++.|-.||+++|++. .
T Consensus        87 ~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~  164 (1255)
T KOG0444|consen   87 DNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-M  164 (1255)
T ss_pred             ccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-h
Confidence            555532 24555555555555555555555 445555555555555555555555443 3445555555555555555 5


Q ss_pred             CchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh--hcccCcEEecccCCccccccccc
Q 048551          227 LPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA--ATSYSQRLNDDDQNHHGRQQNIC  304 (409)
Q Consensus       227 ~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~--l~~l~~~L~l~~n~l~~~~~~l~  304 (409)
                      +|+.+. .+..|++|+|++|.+....-..+..+++|++|.+++.+-+-.-+....  +.++ ..+|++.|.+.       
T Consensus       165 LPPQ~R-RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL-~dvDlS~N~Lp-------  235 (1255)
T KOG0444|consen  165 LPPQIR-RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNL-RDVDLSENNLP-------  235 (1255)
T ss_pred             cCHHHH-HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhh-hhccccccCCC-------
Confidence            555554 455555555555554322222233344444444444333221111111  2222 44444544444       


Q ss_pred             cCChhccCCCCCCcccc------------CCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccce-ecCCCC-CC
Q 048551          305 YLPTGISNLVNLDSLAT------------DSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFD-GEVPTK-GV  369 (409)
Q Consensus       305 ~ip~~~~~l~~L~~L~~------------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~-~~~p~~-~~  369 (409)
                      .+|..+..+.+|..|++            +...+|++|++|.|+++ .+|++++.++.|+.|++ +|+++ .-+|++ +.
T Consensus       236 ~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGK  314 (1255)
T KOG0444|consen  236 IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGK  314 (1255)
T ss_pred             cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhh
Confidence            44444444444444442            23467788888888888 78888888888888888 66664 446666 77


Q ss_pred             CCCCCeecccCCCCceecCCCCCCCCCC
Q 048551          370 FNNKTRISLAGNGKLCGGFDGLHSPSCH  397 (409)
Q Consensus       370 ~~~L~~L~l~~Np~l~g~~p~~~~~~~~  397 (409)
                      +.+|..+..++| .+. -+|+ ++-.|.
T Consensus       315 L~~Levf~aanN-~LE-lVPE-glcRC~  339 (1255)
T KOG0444|consen  315 LIQLEVFHAANN-KLE-LVPE-GLCRCV  339 (1255)
T ss_pred             hhhhHHHHhhcc-ccc-cCch-hhhhhH
Confidence            777777777777 444 5666 444443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.94  E-value=3.6e-30  Score=233.67  Aligned_cols=307  Identities=26%  Similarity=0.345  Sum_probs=203.8

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC  148 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  148 (409)
                      .++++++.+|++. ..|++++.+..++.++.++|++. ++|+.+..+..|+.+++++|++. .+|+.++.+-.++.++..
T Consensus        69 ~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~  145 (565)
T KOG0472|consen   69 CLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDAT  145 (565)
T ss_pred             ceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhcc
Confidence            3556666666666 55666666666666666666665 56666666666666666666665 555555555555555555


Q ss_pred             cccccccCCccccC-----------------------CCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc
Q 048551          149 VIKLTGQLPASIQN-----------------------LSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL  205 (409)
Q Consensus       149 ~n~l~~~~p~~l~~-----------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  205 (409)
                      +|++. ..|+.+.+                       ++.|+++|...|.+. .+|..++.+.+|+-|++..|.+...+ 
T Consensus       146 ~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~lP-  222 (565)
T KOG0472|consen  146 NNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRFLP-  222 (565)
T ss_pred             ccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccccCC-
Confidence            55555 34444444                       444555555555544 56667777777777777777776654 


Q ss_pred             ccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccc--hhhhhc
Q 048551          206 PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSI--WRSAAT  283 (409)
Q Consensus       206 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~l~  283 (409)
                      .|..+..|.+++++.|.+. .+|...+.+++++..||+..|+++ ..|+.+.-+++|++||+|+|.+++.+.  +...+.
T Consensus       223 ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnlhL~  300 (565)
T KOG0472|consen  223 EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNLHLK  300 (565)
T ss_pred             CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccceee
Confidence            6777777888888888877 788888778999999999999999 789999999999999999999998762  221111


Q ss_pred             ccC-----------------------------------------------------------------------------
Q 048551          284 SYS-----------------------------------------------------------------------------  286 (409)
Q Consensus       284 ~l~-----------------------------------------------------------------------------  286 (409)
                      .+.                                                                             
T Consensus       301 ~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdE  380 (565)
T KOG0472|consen  301 FLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDE  380 (565)
T ss_pred             ehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHH
Confidence            000                                                                             


Q ss_pred             ----------cEEecccCCccc-----------------cccccccCChhccCCCCCCccc------------cCCCCCC
Q 048551          287 ----------QRLNDDDQNHHG-----------------RQQNICYLPTGISNLVNLDSLA------------TDSLKSI  327 (409)
Q Consensus       287 ----------~~L~l~~n~l~~-----------------~~~~l~~ip~~~~~l~~L~~L~------------~~~l~~L  327 (409)
                                ..++++.|.+.-                 ....++.+|..++.+++|+.|+            ++.+..|
T Consensus       381 Vfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~L  460 (565)
T KOG0472|consen  381 VFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRL  460 (565)
T ss_pred             HHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhh
Confidence                      234444444331                 1111245555666666666666            3445667


Q ss_pred             CEEECcCCccccccc------------------------hhhhcCCCCcEEEeeccceecCCCC-CCCCCCCeecccCCC
Q 048551          328 EELDLSSNNLSGQLP------------------------RLLVNLSFLVLLNLYNHFDGEVPTK-GVFNNKTRISLAGNG  382 (409)
Q Consensus       328 ~~L~Ls~N~l~~~~p------------------------~~~~~l~~L~~L~L~n~l~~~~p~~-~~~~~L~~L~l~~Np  382 (409)
                      +.||+|+|++. .+|                        +.+.+|.+|.+|||+||-...+|.. +.+.+|++|++.|||
T Consensus       461 q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  461 QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             heecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCc
Confidence            88888877665 333                        3467788999999944444456655 999999999999997


Q ss_pred             Cc
Q 048551          383 KL  384 (409)
Q Consensus       383 ~l  384 (409)
                      +-
T Consensus       540 fr  541 (565)
T KOG0472|consen  540 FR  541 (565)
T ss_pred             cC
Confidence            43

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.92  E-value=3.4e-28  Score=220.86  Aligned_cols=264  Identities=27%  Similarity=0.382  Sum_probs=225.9

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC  148 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  148 (409)
                      .++.+.+++|.++ .+.+.+.++..+.+|++.+|++. ..|.+++.+..++.++.++|++. .+|+.++.+..+..++++
T Consensus        46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s  122 (565)
T KOG0472|consen   46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS  122 (565)
T ss_pred             chhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence            5788999999999 67778999999999999999999 78989999999999999999999 899999999999999999


Q ss_pred             cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCc
Q 048551          149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLP  228 (409)
Q Consensus       149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p  228 (409)
                      +|.+. .+|++++.+..++.++..+|+++ ..|..+..+.++..+++.+|.+...++..-+++.|+++|...|.+. .+|
T Consensus       123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP  199 (565)
T KOG0472|consen  123 SNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLP  199 (565)
T ss_pred             cccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCC
Confidence            99998 88899999999999999999998 7788888999999999999999998885555999999999999997 999


Q ss_pred             hHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccCCh
Q 048551          229 PVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPT  308 (409)
Q Consensus       229 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~  308 (409)
                      +.++ .+.+|+.|++..|++. ..| .|.+|..|++|+++.|++.                               .+|+
T Consensus       200 ~~lg-~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-------------------------------~lpa  245 (565)
T KOG0472|consen  200 PELG-GLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-------------------------------MLPA  245 (565)
T ss_pred             hhhc-chhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-------------------------------hhHH
Confidence            9998 8999999999999998 677 7899999999999999986                               4565


Q ss_pred             hccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCCCCCCCCCeecccCCCCc
Q 048551          309 GISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTKGVFNNKTRISLAGNGKL  384 (409)
Q Consensus       309 ~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~~~~~~L~~L~l~~Np~l  384 (409)
                      ..+          .+++++..||+.+|+++ ..|+.++-+++|.+||+ +|.+++..++-+.+ .|+.|.+.|||.-
T Consensus       246 e~~----------~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlr  310 (565)
T KOG0472|consen  246 EHL----------KHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLR  310 (565)
T ss_pred             HHh----------cccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchH
Confidence            553          23467788888888888 77888888888888888 44444433333666 7778888888743

>PLN03210 Resistant to P

Probab=99.89  E-value=8e-22  Score=214.26  Aligned_cols=277  Identities=21%  Similarity=0.219  Sum_probs=140.2

Q ss_pred             CCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeC
Q 048551           92 VRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADS  171 (409)
Q Consensus        92 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l  171 (409)
                      .+|+.|++++|++. .++..+..+++|++|+++++.....+|. ++.+++|++|++++|.....+|..+..+++|+.|++
T Consensus       611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L  688 (1153)
T PLN03210        611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM  688 (1153)
T ss_pred             cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence            44555555555444 3444444455555555554432223332 444455555555554433344555555555555555


Q ss_pred             CCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeecccccc---
Q 048551          172 NRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNF---  248 (409)
Q Consensus       172 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l---  248 (409)
                      ++|..-+.+|..+ ++++|++|++++|......+.  ...+|+.|++++|.+. .+|..+  .+++|++|.+.++..   
T Consensus       689 ~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~--~~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l  762 (1153)
T PLN03210        689 SRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD--ISTNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKL  762 (1153)
T ss_pred             CCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc--ccCCcCeeecCCCccc-cccccc--cccccccccccccchhhc
Confidence            5543333444333 344555555554433222221  1234455555555544 444332  233333333332110   


Q ss_pred             ----ccccchhhhcCCCCCEEEcccCcCccccchhhh-hcccCcEEecccCCccccccccccCChhccCCCCCCccccCC
Q 048551          249 ----TGPLPDSFSNASNRERLELSYNQFRGKSIWRSA-ATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDS  323 (409)
Q Consensus       249 ----~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~  323 (409)
                          ....+......++|+.|++++|...+.....+. +.++ +.|++++|...      +.+|..+ .+++|+.|++++
T Consensus       763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L-~~L~Ls~C~~L------~~LP~~~-~L~sL~~L~Ls~  834 (1153)
T PLN03210        763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKL-EHLEIENCINL------ETLPTGI-NLESLESLDLSG  834 (1153)
T ss_pred             cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCC-CEEECCCCCCc------CeeCCCC-CccccCEEECCC
Confidence                000011111223455555555443322211122 3333 55555554322      3455444 455566666444


Q ss_pred             C----------CCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-CCCCCCCeecccCCCCce
Q 048551          324 L----------KSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-GVFNNKTRISLAGNGKLC  385 (409)
Q Consensus       324 l----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~~~~~L~~L~l~~Np~l~  385 (409)
                      +          ++|+.|+|++|.|+ .+|.++..+++|++|++ +++....+|.. ..+++|+.+++++|+.+.
T Consensus       835 c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~  907 (1153)
T PLN03210        835 CSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT  907 (1153)
T ss_pred             CCccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence            2          46788999999998 78999999999999999 75555556654 778899999999987775

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.89  E-value=5.8e-22  Score=202.89  Aligned_cols=224  Identities=24%  Similarity=0.349  Sum_probs=124.3

Q ss_pred             cCCCHHHHHHHHHHHHhCCCCCCCCC----CCCCCCCCCCcee----------------eecC-----------------
Q 048551           26 INANETDRLALLAIKSQLHDPLEVTS----SLTNSVNLCEWTG----------------VTCA-----------------   68 (409)
Q Consensus        26 ~~~~~~~~~~l~~~~~~~~~~~~~~~----~w~~~~~~c~~~g----------------~~c~-----------------   68 (409)
                      +....++...++++.+.+..|. +..    .|+...++|.-..                |.|.                 
T Consensus        58 ~~~~~~~~~~~~~~~~~l~~p~-~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~~~vt~l~~~g~~~~~~  136 (754)
T PRK15370         58 ETASPEEIKSKFECLRMLAFPA-YADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGGGKSVTYTRVTESEQASS  136 (754)
T ss_pred             CCCCHHHHHHHHHHHHHhcCCc-hhhccccccCCCCcccccCCcchhhheeeecCCceEEecCCCccccccccccccccc
Confidence            3456789999999999986665 333    4888888995443                4553                 


Q ss_pred             ------------------------------------------CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccc
Q 048551           69 ------------------------------------------SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSG  106 (409)
Q Consensus        69 ------------------------------------------~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~  106 (409)
                                                                +.+.|++++++++ .+|..+.  +.|+.|++++|+++ 
T Consensus       137 ~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-  212 (754)
T PRK15370        137 ASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-  212 (754)
T ss_pred             CCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-
Confidence                                                      3445666665555 4454432  35666666666665 


Q ss_pred             cCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCC
Q 048551          107 TIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQ  186 (409)
Q Consensus       107 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  186 (409)
                      .+|..+.  ++|++|++++|.++ .+|..+.  .+|+.|++++|.+. .+|..+.  .+|+.|++++|+++ .+|..+. 
T Consensus       213 sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~-  282 (754)
T PRK15370        213 SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP-  282 (754)
T ss_pred             cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC-
Confidence            3444332  35666666666655 3444332  34566666666655 4454443  35566666666655 3444332 


Q ss_pred             CCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEE
Q 048551          187 LRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLE  266 (409)
Q Consensus       187 l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  266 (409)
                       ++|+.|++++|.+++.+..+.  ++|+.|++++|.++ .+|..+.   ++|+.|++++|.+++ +|..+.  ++|+.|+
T Consensus       283 -~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l~---~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~  352 (754)
T PRK15370        283 -EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLT-ALPETLP---PGLKTLEAGENALTS-LPASLP--PELQVLD  352 (754)
T ss_pred             -CCCcEEECCCCccccCcccch--hhHHHHHhcCCccc-cCCcccc---ccceeccccCCcccc-CChhhc--CcccEEE
Confidence             356666666666555432221  34555666666655 4444332   455666666666553 444332  4566666


Q ss_pred             cccCcCcc
Q 048551          267 LSYNQFRG  274 (409)
Q Consensus       267 Ls~N~l~~  274 (409)
                      +++|+++.
T Consensus       353 Ls~N~L~~  360 (754)
T PRK15370        353 VSKNQITV  360 (754)
T ss_pred             CCCCCCCc
Confidence            66665553

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.88  E-value=6.2e-22  Score=201.69  Aligned_cols=259  Identities=24%  Similarity=0.310  Sum_probs=176.6

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC  148 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  148 (409)
                      .-..|++++++++ .+|..+.  ++|+.|++.+|+++ .+|.   ..++|++|++++|+++ .+|..   .++|+.|+++
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls  270 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIF  270 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeecc
Confidence            4567889999888 7787765  47899999999888 4664   3578899999999888 56643   3578888888


Q ss_pred             cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCc
Q 048551          149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLP  228 (409)
Q Consensus       149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p  228 (409)
                      +|.++ .+|..+   ++|+.|++++|+++ .+|..   .++|++|++++|.+++++..   ..+|+.|++++|.++ .+|
T Consensus       271 ~N~L~-~Lp~lp---~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~-~LP  338 (788)
T PRK15387        271 SNPLT-HLPALP---SGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLT-SLP  338 (788)
T ss_pred             CCchh-hhhhch---hhcCEEECcCCccc-ccccc---ccccceeECCCCccccCCCC---cccccccccccCccc-ccc
Confidence            88887 455432   46778888888887 44542   46788888888888875432   235777888888887 566


Q ss_pred             hHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccCCh
Q 048551          229 PVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPT  308 (409)
Q Consensus       229 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~  308 (409)
                      ..    ..+|+.|++++|+++ .+|..   .++|+.|++++|++++.+..   ..++ +.|++++|.++       .+|.
T Consensus       339 ~l----p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L-~~LdLs~N~Lt-------~LP~  399 (788)
T PRK15387        339 TL----PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTSLPAL---PSGL-KELIVSGNRLT-------SLPV  399 (788)
T ss_pred             cc----ccccceEecCCCccC-CCCCC---CcccceehhhccccccCccc---cccc-ceEEecCCccc-------CCCC
Confidence            42    246888888888887 34542   34677788888888765421   1223 77888888776       4553


Q ss_pred             hccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-CCCCCCCeecccCCCCcee
Q 048551          309 GISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-GVFNNKTRISLAGNGKLCG  386 (409)
Q Consensus       309 ~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~~~~~L~~L~l~~Np~l~g  386 (409)
                      ..              ++|+.|++++|+|+ .+|...   .+|+.|++ +|+++ .+|.. ..+++|+.|++++|| ++|
T Consensus       400 l~--------------s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~-Ls~  459 (788)
T PRK15387        400 LP--------------SELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP-LSE  459 (788)
T ss_pred             cc--------------cCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCC-CCc
Confidence            21              35677777777777 355432   35666777 55554 55654 556777777777773 555


Q ss_pred             cCC
Q 048551          387 GFD  389 (409)
Q Consensus       387 ~~p  389 (409)
                      .+|
T Consensus       460 ~~~  462 (788)
T PRK15387        460 RTL  462 (788)
T ss_pred             hHH
Confidence            544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.87  E-value=1.8e-24  Score=214.78  Aligned_cols=299  Identities=24%  Similarity=0.317  Sum_probs=180.1

Q ss_pred             cCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEE
Q 048551           67 CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS  146 (409)
Q Consensus        67 c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  146 (409)
                      |-+++.||+++|++. .+|..+..+.+|+.|+++.|.|. ..|.+..++.+|+++.|.+|.+. ..|..+..+.+|++|+
T Consensus        44 ~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~Ld  120 (1081)
T KOG0618|consen   44 RVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLD  120 (1081)
T ss_pred             eeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccc
Confidence            336888999999888 88888888888899999888888 67777888888888888888887 7888888888888888


Q ss_pred             eecccccccCCccccCCCCCcE-----------------------------------------EeCCCCCCCCCCCCCCC
Q 048551          147 FCVIKLTGQLPASIQNLSSHLE-----------------------------------------ADSNRNNFGGKIPESPG  185 (409)
Q Consensus       147 L~~n~l~~~~p~~l~~l~~L~~-----------------------------------------L~l~~n~l~~~~~~~~~  185 (409)
                      +++|.+. .+|..+..++.+++                                         +++.+|.+...   .+.
T Consensus       121 lS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~---dls  196 (1081)
T KOG0618|consen  121 LSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVL---DLS  196 (1081)
T ss_pred             cchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhh---hhh
Confidence            8888876 45544333222222                                         33333333200   001


Q ss_pred             CC------------------------------------------CCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcC
Q 048551          186 QL------------------------------------------RSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRL  223 (409)
Q Consensus       186 ~l------------------------------------------~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l  223 (409)
                      .+                                          .+|++++++.|++++.+..+..+.+|+.+++.+|++
T Consensus       197 ~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l  276 (1081)
T KOG0618|consen  197 NLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL  276 (1081)
T ss_pred             hccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhH
Confidence            11                                          123333444444443333344444444444444444


Q ss_pred             cccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh---------------hc-----
Q 048551          224 NGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA---------------AT-----  283 (409)
Q Consensus       224 ~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~---------------l~-----  283 (409)
                      + .+|..++ ...+|+.|++.+|.+. .+|......++|++|+|..|++...+...+.               ++     
T Consensus       277 ~-~lp~ri~-~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~  353 (1081)
T KOG0618|consen  277 V-ALPLRIS-RITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSY  353 (1081)
T ss_pred             H-hhHHHHh-hhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccc
Confidence            3 4444444 4444555555555554 4555666788899999999998876521110               00     


Q ss_pred             ------ccCcEEecccCCccccccccccCChhccCCCCCCccc-------------cCCCCCCCEEECcCCccccccchh
Q 048551          284 ------SYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLA-------------TDSLKSIEELDLSSNNLSGQLPRL  344 (409)
Q Consensus       284 ------~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~-------------~~~l~~L~~L~Ls~N~l~~~~p~~  344 (409)
                            .+ +.|++.+|.++      ...-+.+.++.+|+.|+             +.+++.|+.|+||+|+++ .+|..
T Consensus       354 ~e~~~~~L-q~LylanN~Lt------d~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~t  425 (1081)
T KOG0618|consen  354 EENNHAAL-QELYLANNHLT------DSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDT  425 (1081)
T ss_pred             cchhhHHH-HHHHHhcCccc------ccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHH
Confidence                  01 55566666665      44444555666666666             445667777777777777 55555


Q ss_pred             hhc----------------------CCCCcEEEe-eccceec-CCCCCCCCCCCeecccCCCC
Q 048551          345 LVN----------------------LSFLVLLNL-YNHFDGE-VPTKGVFNNKTRISLAGNGK  383 (409)
Q Consensus       345 ~~~----------------------l~~L~~L~L-~n~l~~~-~p~~~~~~~L~~L~l~~Np~  383 (409)
                      +..                      ++.|+.+|+ .|++... +|....-++|++||++||++
T Consensus       426 va~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  426 VANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             HHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence            444                      555666666 5555432 22221125666666666654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=2.7e-21  Score=196.99  Aligned_cols=240  Identities=25%  Similarity=0.289  Sum_probs=192.1

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC  148 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  148 (409)
                      +++.|++.+|+++ .+|..   .++|++|++++|+++ .+|..   .++|+.|++++|.++ .+|..+   .+|+.|+++
T Consensus       223 ~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~lp---~~L~~L~Ls  290 (788)
T PRK15387        223 HITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPALP---SGLCKLWIF  290 (788)
T ss_pred             CCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhch---hhcCEEECc
Confidence            7899999999999 67753   578999999999999 55643   478999999999998 566533   578899999


Q ss_pred             cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCc
Q 048551          149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLP  228 (409)
Q Consensus       149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p  228 (409)
                      +|+++ .+|..   .++|+.|++++|.+++ +|...   .+|+.|++++|.+++++. +  ..+|+.|++++|+++ .+|
T Consensus       291 ~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~~LP~-l--p~~Lq~LdLS~N~Ls-~LP  358 (788)
T PRK15387        291 GNQLT-SLPVL---PPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLTSLPT-L--PSGLQELSVSDNQLA-SLP  358 (788)
T ss_pred             CCccc-ccccc---ccccceeECCCCcccc-CCCCc---ccccccccccCccccccc-c--ccccceEecCCCccC-CCC
Confidence            99998 56653   4689999999999984 55432   468889999999987543 1  257999999999999 677


Q ss_pred             hHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccCCh
Q 048551          229 PVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPT  308 (409)
Q Consensus       229 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~  308 (409)
                      ..    .++|+.|++++|+++ .+|..   ..+|+.|++++|++++.+..   ..++ +.|++++|.++       .+|.
T Consensus       359 ~l----p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L-~~LdLS~N~Ls-------sIP~  419 (788)
T PRK15387        359 TL----PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLPVL---PSEL-KELMVSGNRLT-------SLPM  419 (788)
T ss_pred             CC----Ccccceehhhccccc-cCccc---ccccceEEecCCcccCCCCc---ccCC-CEEEccCCcCC-------CCCc
Confidence            53    357889999999998 46653   35799999999999876521   1233 89999999988       5664


Q ss_pred             hccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCC
Q 048551          309 GISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPT  366 (409)
Q Consensus       309 ~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~  366 (409)
                      ..              .+|+.|++++|+|+ .+|..+.++++|+.|+| +|++.+.++.
T Consensus       420 l~--------------~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        420 LP--------------SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             ch--------------hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            32              35688999999999 78999999999999999 9999887655

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.85  E-value=5.2e-23  Score=204.41  Aligned_cols=275  Identities=24%  Similarity=0.254  Sum_probs=192.4

Q ss_pred             CCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeC
Q 048551           92 VRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADS  171 (409)
Q Consensus        92 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l  171 (409)
                      ++|+.|+.+.|.++...+.  ..-.+|+++++++|+++ .+|++++.+.+|+.++..+|.++ .+|..+...++|+.|++
T Consensus       219 ~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~  294 (1081)
T KOG0618|consen  219 PSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSA  294 (1081)
T ss_pred             cchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHh
Confidence            3444555555555421111  12356777777777777 56677777777777777777775 67777777777777777


Q ss_pred             CCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCC-CCcEEEeecCcCcccCchHHhhCCCccceeeccccccc
Q 048551          172 NRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLS-SLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFT  249 (409)
Q Consensus       172 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~-~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~  249 (409)
                      .+|++. .+|....+++.|++|++..|.+...++ .+.... .++.++.+.|.+. ..|..=...++.|+.|.+.+|.++
T Consensus       295 ~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Lt  372 (1081)
T KOG0618|consen  295 AYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLT  372 (1081)
T ss_pred             hhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCccc
Confidence            777776 566666777777788887777777665 333332 3666677777666 444322224567999999999999


Q ss_pred             cccchhhhcCCCCCEEEcccCcCccccchhhh-hcccCcEEecccCCccccccccccCChhccCCCCCCccc--------
Q 048551          250 GPLPDSFSNASNRERLELSYNQFRGKSIWRSA-ATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLA--------  320 (409)
Q Consensus       250 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~--------  320 (409)
                      +..-..+.++.+|+.|+|++|++..++...+. +..+ ++|+|++|+++       .+|..+..++.|++|.        
T Consensus       373 d~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~L-eeL~LSGNkL~-------~Lp~tva~~~~L~tL~ahsN~l~~  444 (1081)
T KOG0618|consen  373 DSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEEL-EELNLSGNKLT-------TLPDTVANLGRLHTLRAHSNQLLS  444 (1081)
T ss_pred             ccchhhhccccceeeeeecccccccCCHHHHhchHHh-HHHhcccchhh-------hhhHHHHhhhhhHHHhhcCCceee
Confidence            87777889999999999999999887754444 4455 99999999998       8999999999888887        


Q ss_pred             ---cCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC--CCCCCCCeecccCC
Q 048551          321 ---TDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK--GVFNNKTRISLAGN  381 (409)
Q Consensus       321 ---~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~--~~~~~L~~L~l~~N  381 (409)
                         +..++.|+.+|+|.|+++...-......++|++||+ +|.-. .+...  ..+..+...++.-|
T Consensus       445 fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l-~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  445 FPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL-VFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             chhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc-ccchhhhHHhhhhhheecccC
Confidence               678899999999999998543333333489999999 66532 22221  23444444555544

>PLN03210 Resistant to P

Probab=99.83  E-value=2.2e-19  Score=195.37  Aligned_cols=262  Identities=21%  Similarity=0.206  Sum_probs=180.2

Q ss_pred             cCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEE
Q 048551           67 CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS  146 (409)
Q Consensus        67 c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  146 (409)
                      ..+|+.|+++++.+. .++..+..+++|+.|+|+++.....+|. ++.+++|+.|++++|.....+|..++.+++|+.|+
T Consensus       610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~  687 (1153)
T PLN03210        610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD  687 (1153)
T ss_pred             ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence            348999999999998 7888889999999999998865556774 88899999999999876668999999999999999


Q ss_pred             eecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCC----------------
Q 048551          147 FCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNL----------------  210 (409)
Q Consensus       147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l----------------  210 (409)
                      +++|.....+|..+ ++++|+.|++++|...+.+|..   ..+|++|++++|.+...+..+ .+                
T Consensus       688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l  762 (1153)
T PLN03210        688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKL  762 (1153)
T ss_pred             CCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchhhc
Confidence            99976555778765 7889999999998765555543   357888888888876543321 22                


Q ss_pred             ---------------CCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccc
Q 048551          211 ---------------SSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGK  275 (409)
Q Consensus       211 ---------------~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  275 (409)
                                     ++|+.|++++|...+.+|..+. .+++|+.|++++|..-+.+|..+ ++++|+.|++++|..-..
T Consensus       763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~-~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~  840 (1153)
T PLN03210        763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ-NLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRT  840 (1153)
T ss_pred             cccccccchhhhhccccchheeCCCCCCccccChhhh-CCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccc
Confidence                           3556666666655556666665 66666666666654333455444 566666666666532211


Q ss_pred             cchhhhhcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcC-CccccccchhhhcCCCCcEE
Q 048551          276 SIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSS-NNLSGQLPRLLVNLSFLVLL  354 (409)
Q Consensus       276 ~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L  354 (409)
                      ....  ..++ +.|++++|.+.       .+|.++..+           ++|+.|++++ |+++ .+|..+..++.|+.+
T Consensus       841 ~p~~--~~nL-~~L~Ls~n~i~-------~iP~si~~l-----------~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L  898 (1153)
T PLN03210        841 FPDI--STNI-SDLNLSRTGIE-------EVPWWIEKF-----------SNLSFLDMNGCNNLQ-RVSLNISKLKHLETV  898 (1153)
T ss_pred             cccc--cccc-CEeECCCCCCc-------cChHHHhcC-----------CCCCEEECCCCCCcC-ccCcccccccCCCee
Confidence            1000  1122 67777777766       677666554           5556666666 4444 455566677777777


Q ss_pred             Ee-ecc
Q 048551          355 NL-YNH  359 (409)
Q Consensus       355 ~L-~n~  359 (409)
                      ++ ++.
T Consensus       899 ~l~~C~  904 (1153)
T PLN03210        899 DFSDCG  904 (1153)
T ss_pred             ecCCCc
Confidence            77 554

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.82  E-value=4.1e-22  Score=181.17  Aligned_cols=273  Identities=19%  Similarity=0.176  Sum_probs=172.3

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCC-CcCCccCCcccCCCCCCcEEEe
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANR-NILAGEIPAEIGNLFKLEKLSF  147 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~L  147 (409)
                      ..+.++|..|+|+...|.+|+.+++||.|||++|.|+.+-|++|.+++.|..|-+.+ |+|+..-...|+++..++-|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            567899999999966667899999999999999999988889999998887776654 8998444456888999999999


Q ss_pred             ecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCccc------------Cc-ccCCCCCCc
Q 048551          148 CVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGM------------FL-PVYNLSSLE  214 (409)
Q Consensus       148 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------~~-~~~~l~~L~  214 (409)
                      .-|.+.-...+.|..++++..|.+.+|.+...-...|..+.+++.+.+..|.+...            .+ .++...-..
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~  227 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS  227 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence            98988877777888999999999999988744444788888888888887763211            11 222222222


Q ss_pred             EEEeecCcCcccCch-HHhhCCCccceeeccccccccccc-hhhhcCCCCCEEEcccCcCccccchhhh-hcccCcEEec
Q 048551          215 MIYLHDNRLNGNLPP-VIGAKLPNLRKIVIALNNFTGPLP-DSFSNASNRERLELSYNQFRGKSIWRSA-ATSYSQRLND  291 (409)
Q Consensus       215 ~L~l~~n~l~~~~p~-~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-l~~l~~~L~l  291 (409)
                      -..+.+.++. .++. .+......+.+--.+.+...++.| ..|..+++|+.|+|++|+++++.-..|. +.++ ++|.|
T Consensus       228 p~rl~~~Ri~-q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l-~eL~L  305 (498)
T KOG4237|consen  228 PYRLYYKRIN-QEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAEL-QELYL  305 (498)
T ss_pred             hHHHHHHHhc-ccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhh-hhhhc
Confidence            2233333333 2221 111111111111111222222333 3467777777777777777655433333 2223 44444


Q ss_pred             ccCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccc
Q 048551          292 DDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHF  360 (409)
Q Consensus       292 ~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l  360 (409)
                      ..|.+.       .+....          |.++..|+.|+|.+|+|+...|..|..+.+|.+|+| .|.+
T Consensus       306 ~~N~l~-------~v~~~~----------f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  306 TRNKLE-------FVSSGM----------FQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             CcchHH-------HHHHHh----------hhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            444433       222211          445566677777777777666667777777777776 6654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.81  E-value=1e-19  Score=186.47  Aligned_cols=230  Identities=18%  Similarity=0.291  Sum_probs=179.1

Q ss_pred             CCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551           68 ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF  147 (409)
Q Consensus        68 ~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  147 (409)
                      .+++.|++++|+++ .+|..+.  ++|++|++++|+++ .+|..+.  ..|+.|++++|.++ .+|..+.  .+|++|++
T Consensus       199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L  269 (754)
T PRK15370        199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL  269 (754)
T ss_pred             cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence            47999999999999 7777664  58999999999998 5676553  57999999999999 7887664  58999999


Q ss_pred             ecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccC
Q 048551          148 CVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNL  227 (409)
Q Consensus       148 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~  227 (409)
                      ++|+++ .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|.++..+..+  .++|+.|++++|.++ .+
T Consensus       270 s~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt-~L  340 (754)
T PRK15370        270 FHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTALPETL--PPGLKTLEAGENALT-SL  340 (754)
T ss_pred             cCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccccCCccc--cccceeccccCCccc-cC
Confidence            999998 6787664  58999999999998 4565443  57999999999999765433  268999999999998 68


Q ss_pred             chHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccCC
Q 048551          228 PPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLP  307 (409)
Q Consensus       228 p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip  307 (409)
                      |..+.   ++|+.|++++|+++ .+|..+  .++|+.|++++|+++..+....  ..+ +.|++++|.+.       .+|
T Consensus       341 P~~l~---~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL-~~LdLs~N~L~-------~LP  404 (754)
T PRK15370        341 PASLP---PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNLPENLP--AAL-QIMQASRNNLV-------RLP  404 (754)
T ss_pred             Chhhc---CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCCCHhHH--HHH-HHHhhccCCcc-------cCc
Confidence            87653   78999999999998 567655  3689999999999986542111  122 67777777776       566


Q ss_pred             hhccCCCCCCccccCCCCCCCEEECcCCccc
Q 048551          308 TGISNLVNLDSLATDSLKSIEELDLSSNNLS  338 (409)
Q Consensus       308 ~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~  338 (409)
                      ..+..+       +..++.+..|++.+|.++
T Consensus       405 ~sl~~~-------~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        405 ESLPHF-------RGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             hhHHHH-------hhcCCCccEEEeeCCCcc
Confidence            554433       223466777888888776

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.79  E-value=1e-20  Score=178.76  Aligned_cols=275  Identities=19%  Similarity=0.196  Sum_probs=164.9

Q ss_pred             EEEecCCCCcc-ccCccccCCCCCCEEEccCCccccc----CCccccCCCCCcEEEcCCCcCCc------cCCcccCCCC
Q 048551           72 FINIADNGVQG-EIPNELGNLVRLEKLILANNSFSGT----IPTNLSLRSKLMLFFANRNILAG------EIPAEIGNLF  140 (409)
Q Consensus        72 ~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~------~~p~~~~~l~  140 (409)
                      .|+|..+.+++ .....+..+++|+.|+++++.+++.    ++..+...+.+++++++++.+.+      .++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            35666666652 3444555666677778877777532    44445566677777777776652      1233455677


Q ss_pred             CCcEEEeecccccccCCccccCCCC---CcEEeCCCCCCCC----CCCCCCCCC-CCCcEEEccCCcCcccC----c-cc
Q 048551          141 KLEKLSFCVIKLTGQLPASIQNLSS---HLEADSNRNNFGG----KIPESPGQL-RSLFYLNVGGNQFSGMF----L-PV  207 (409)
Q Consensus       141 ~L~~L~L~~n~l~~~~p~~l~~l~~---L~~L~l~~n~l~~----~~~~~~~~l-~~L~~L~l~~n~l~~~~----~-~~  207 (409)
                      +|++|++++|.+.+..+..+..+.+   |++|++++|.+.+    .+...+..+ ++|+.|++++|.+++..    . .+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            7777777777776544444444444   7777777777652    122233444 67777777777776321    1 34


Q ss_pred             CCCCCCcEEEeecCcCccc----CchHHhhCCCccceeeccccccccc----cchhhhcCCCCCEEEcccCcCccccchh
Q 048551          208 YNLSSLEMIYLHDNRLNGN----LPPVIGAKLPNLRKIVIALNNFTGP----LPDSFSNASNRERLELSYNQFRGKSIWR  279 (409)
Q Consensus       208 ~~l~~L~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~~~~  279 (409)
                      ..+.+|+.|++++|.+++.    ++..+. ..++|+.|++++|.+++.    ++..+..+++|++|++++|++++..+..
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~  240 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIRALAEGLK-ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA  240 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHHHHHHHHH-hCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence            4566777888877777642    222233 445788888888777633    2334556677888888887776532111


Q ss_pred             hhhcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCCcccc----ccchhhhcCCCCcEEE
Q 048551          280 SAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSG----QLPRLLVNLSFLVLLN  355 (409)
Q Consensus       280 ~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~  355 (409)
                      +.                          ..+          ....+.|++|++++|.+++    .+...+..+++|++++
T Consensus       241 l~--------------------------~~~----------~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~  284 (319)
T cd00116         241 LA--------------------------SAL----------LSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELD  284 (319)
T ss_pred             HH--------------------------HHH----------hccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence            11                          000          0012567888888888762    2334556667788888


Q ss_pred             e-eccceec----CCCC-CCC-CCCCeecccCCCC
Q 048551          356 L-YNHFDGE----VPTK-GVF-NNKTRISLAGNGK  383 (409)
Q Consensus       356 L-~n~l~~~----~p~~-~~~-~~L~~L~l~~Np~  383 (409)
                      + +|++...    +... ..+ +.++.+++.+||+
T Consensus       285 l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         285 LRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             CCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            8 7777643    2222 234 6788888888864

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.77  E-value=6.6e-21  Score=154.88  Aligned_cols=159  Identities=25%  Similarity=0.401  Sum_probs=99.0

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC  148 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  148 (409)
                      ++++|.|++|+++ .+|+.+..+.+|++|++++|+|+ ++|.+++.+++|+.|+++-|++. ..|..|+.++.|+.||++
T Consensus        34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt  110 (264)
T KOG0617|consen   34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT  110 (264)
T ss_pred             hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence            5666667777776 56666666677777777777766 56666666666666666666666 566666666666666666


Q ss_pred             cccccc-cCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccC
Q 048551          149 VIKLTG-QLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNL  227 (409)
Q Consensus       149 ~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~  227 (409)
                      +|++.. .+|..|..++.|+-|++++|++. .+|..++++++|+.|.+..|.+...+..++.++.|++|++.+|+++ .+
T Consensus       111 ynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~-vl  188 (264)
T KOG0617|consen  111 YNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT-VL  188 (264)
T ss_pred             ccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee-ec
Confidence            666643 35555556666666666666655 5555566666666666666555554445555555555555555555 55


Q ss_pred             chHHh
Q 048551          228 PPVIG  232 (409)
Q Consensus       228 p~~~~  232 (409)
                      |+.++
T Consensus       189 ppel~  193 (264)
T KOG0617|consen  189 PPELA  193 (264)
T ss_pred             Chhhh
Confidence            55443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.75  E-value=2.2e-20  Score=151.85  Aligned_cols=181  Identities=28%  Similarity=0.408  Sum_probs=156.3

Q ss_pred             cccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCC
Q 048551           87 ELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSH  166 (409)
Q Consensus        87 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  166 (409)
                      .+..+.+++.|.|++|+++ .+|..++.+.+|++|++.+|+++ .+|..+..+++|+.|++.-|++. ..|..|+.++.|
T Consensus        28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l  104 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL  104 (264)
T ss_pred             cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence            4556788999999999999 78888999999999999999999 89999999999999999999998 899999999999


Q ss_pred             cEEeCCCCCCCC-CCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccc
Q 048551          167 LEADSNRNNFGG-KIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIAL  245 (409)
Q Consensus       167 ~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~  245 (409)
                      +.||+.+|++.. .+|..|-.+..|+.|.+++|.+.-.++.++++++|+.|.+.+|.+- ++|..++ .+..|++|.+.+
T Consensus       105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig-~lt~lrelhiqg  182 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIG-DLTRLRELHIQG  182 (264)
T ss_pred             hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHH-HHHHHHHHhccc
Confidence            999999999874 5788888889999999999999988889999999999999999998 8999998 899999999999


Q ss_pred             cccccccchhhhcCC---CCCEEEcccCcCc
Q 048551          246 NNFTGPLPDSFSNAS---NRERLELSYNQFR  273 (409)
Q Consensus       246 n~l~~~~p~~l~~l~---~L~~L~Ls~N~l~  273 (409)
                      |.++ .+|..++++.   +=+.+.+.+|.+.
T Consensus       183 nrl~-vlppel~~l~l~~~k~v~r~E~NPwv  212 (264)
T KOG0617|consen  183 NRLT-VLPPELANLDLVGNKQVMRMEENPWV  212 (264)
T ss_pred             ceee-ecChhhhhhhhhhhHHHHhhhhCCCC
Confidence            9998 6676665542   1233444455443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.73  E-value=1.1e-18  Score=164.97  Aligned_cols=253  Identities=20%  Similarity=0.211  Sum_probs=182.8

Q ss_pred             CCcEEEecCCCCccc----cCccccCCCCCCEEEccCCcccc------cCCccccCCCCCcEEEcCCCcCCccCCcccCC
Q 048551           69 SLRFINIADNGVQGE----IPNELGNLVRLEKLILANNSFSG------TIPTNLSLRSKLMLFFANRNILAGEIPAEIGN  138 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~  138 (409)
                      .+++++++++.+++.    ++..+...+.+++++++++.+.+      .++..+..+++|+.|++++|.+.+..+..+..
T Consensus        24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  103 (319)
T cd00116          24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES  103 (319)
T ss_pred             hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence            589999999998543    56667788889999999998862      23455677899999999999998656655555


Q ss_pred             CCC---CcEEEeecccccc----cCCccccCC-CCCcEEeCCCCCCCCC----CCCCCCCCCCCcEEEccCCcCcccC--
Q 048551          139 LFK---LEKLSFCVIKLTG----QLPASIQNL-SSHLEADSNRNNFGGK----IPESPGQLRSLFYLNVGGNQFSGMF--  204 (409)
Q Consensus       139 l~~---L~~L~L~~n~l~~----~~p~~l~~l-~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~--  204 (409)
                      +..   |++|++++|.+++    .+...+..+ ++|+.|++++|.+++.    ++..+..+++|++|++++|.+.+..  
T Consensus       104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  183 (319)
T cd00116         104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR  183 (319)
T ss_pred             HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence            554   9999999999873    233455667 8999999999999843    3345667789999999999988421  


Q ss_pred             ---cccCCCCCCcEEEeecCcCcccC----chHHhhCCCccceeeccccccccccchhhh-----cCCCCCEEEcccCcC
Q 048551          205 ---LPVYNLSSLEMIYLHDNRLNGNL----PPVIGAKLPNLRKIVIALNNFTGPLPDSFS-----NASNRERLELSYNQF  272 (409)
Q Consensus       205 ---~~~~~l~~L~~L~l~~n~l~~~~----p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~Ls~N~l  272 (409)
                         ..+...++|+.|++++|.+++.-    +..+. .+++|++|++++|.+++.....+.     ..+.|++|++++|.+
T Consensus       184 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~-~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i  262 (319)
T cd00116         184 ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLA-SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI  262 (319)
T ss_pred             HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhc-ccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence               13456679999999999987432    23333 678999999999999864333332     237899999999998


Q ss_pred             ccccchhhhhcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCCccccc----cchhhhcC
Q 048551          273 RGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQ----LPRLLVNL  348 (409)
Q Consensus       273 ~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l  348 (409)
                      ++....                          .+...+           ..+++|+++++++|+++..    ....+...
T Consensus       263 ~~~~~~--------------------------~l~~~~-----------~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~  305 (319)
T cd00116         263 TDDGAK--------------------------DLAEVL-----------AEKESLLELDLRGNKFGEEGAQLLAESLLEP  305 (319)
T ss_pred             CcHHHH--------------------------HHHHHH-----------hcCCCccEEECCCCCCcHHHHHHHHHHHhhc
Confidence            743211                          111111           1236778999999998854    33344444


Q ss_pred             -CCCcEEEe-ecc
Q 048551          349 -SFLVLLNL-YNH  359 (409)
Q Consensus       349 -~~L~~L~L-~n~  359 (409)
                       +.|+++++ +|.
T Consensus       306 ~~~~~~~~~~~~~  318 (319)
T cd00116         306 GNELESLWVKDDS  318 (319)
T ss_pred             CCchhhcccCCCC
Confidence             67888887 553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.71  E-value=6.2e-20  Score=167.08  Aligned_cols=252  Identities=21%  Similarity=0.175  Sum_probs=175.9

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccC-CcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILAN-NSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF  147 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  147 (409)
                      +|++|||++|+|+..-|.+|..++.+..|-+-+ |+|+......|.++..|+.|.+.-|++.-...+.|..++++..|.+
T Consensus        92 ~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLsl  171 (498)
T KOG4237|consen   92 RLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSL  171 (498)
T ss_pred             hhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcc
Confidence            899999999999988899999999988776655 9999666678999999999999999999767778999999999999


Q ss_pred             ecccccccCCccccCCCCCcEEeCCCCCCC------------CCCCCCCCCCCCCcEEEccCCcCcccCc-cc-CCCCCC
Q 048551          148 CVIKLTGQLPASIQNLSSHLEADSNRNNFG------------GKIPESPGQLRSLFYLNVGGNQFSGMFL-PV-YNLSSL  213 (409)
Q Consensus       148 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~-~~l~~L  213 (409)
                      ..|.+...--..|..+..++.+.+..|.+.            ...|.+++...-..-..+.+.++..+.+ .+ ..+..+
T Consensus       172 yDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl  251 (498)
T KOG4237|consen  172 YDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESL  251 (498)
T ss_pred             cchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhH
Confidence            999998433348889999999999888732            1233444444444444555555554443 22 122222


Q ss_pred             cEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh-hcccCcEEecc
Q 048551          214 EMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA-ATSYSQRLNDD  292 (409)
Q Consensus       214 ~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-l~~l~~~L~l~  292 (409)
                      ..--.+.+...+..|..-+..+++|+.|++++|+++++-+.+|.+..++++|.|..|++..+.-..|. +..+ +.|+|.
T Consensus       252 ~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L-~tL~L~  330 (498)
T KOG4237|consen  252 PSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGL-KTLSLY  330 (498)
T ss_pred             HHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccc-eeeeec
Confidence            22222333344455555455777777777777777777777777777777777777777655444444 4444 677777


Q ss_pred             cCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCCccc
Q 048551          293 DQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLS  338 (409)
Q Consensus       293 ~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~  338 (409)
                      +|+++      .-.|..+           ..+.+|.+|+|-.|.+-
T Consensus       331 ~N~it------~~~~~aF-----------~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  331 DNQIT------TVAPGAF-----------QTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             CCeeE------EEecccc-----------cccceeeeeehccCccc
Confidence            77776      3334333           34466788888777654

>PLN03150 hypothetical protein; Provisional

Probab=99.62  E-value=2.7e-15  Score=153.14  Aligned_cols=146  Identities=27%  Similarity=0.446  Sum_probs=115.2

Q ss_pred             CCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC-----CceeeecC--------CCcEEEecCCCCccccCccccCCCC
Q 048551           27 NANETDRLALLAIKSQLHDPLEVTSSLTNSVNLC-----EWTGVTCA--------SLRFINIADNGVQGEIPNELGNLVR   93 (409)
Q Consensus        27 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c-----~~~g~~c~--------~l~~L~L~~n~l~~~~p~~~~~l~~   93 (409)
                      ...++|.++|+.+|+++.++..  .+|..  ++|     .|.|+.|.        .++.|+|++|++.|.+|..+..+++
T Consensus       368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~  443 (623)
T PLN03150        368 KTLLEEVSALQTLKSSLGLPLR--FGWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRH  443 (623)
T ss_pred             ccCchHHHHHHHHHHhcCCccc--CCCCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCC
Confidence            3566899999999999865532  37864  344     79999994        2677888888888888888888888


Q ss_pred             CCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCC-CCCcEEeCC
Q 048551           94 LEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNL-SSHLEADSN  172 (409)
Q Consensus        94 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~l~  172 (409)
                      |+.|+|++|.++|.+|..+..+++|+.|++++|.+++.+|+.++++++|++|++++|.+++.+|..+... .++..+++.
T Consensus       444 L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~  523 (623)
T PLN03150        444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFT  523 (623)
T ss_pred             CCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEec
Confidence            8888888888888888888888888888888888888888888888888888888888888888777653 355666776


Q ss_pred             CCCC
Q 048551          173 RNNF  176 (409)
Q Consensus       173 ~n~l  176 (409)
                      +|..
T Consensus       524 ~N~~  527 (623)
T PLN03150        524 DNAG  527 (623)
T ss_pred             CCcc
Confidence            6653

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.51  E-value=5e-16  Score=147.83  Aligned_cols=195  Identities=24%  Similarity=0.324  Sum_probs=137.4

Q ss_pred             EEEecCCCCccccCcc--ccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeec
Q 048551           72 FINIADNGVQGEIPNE--LGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCV  149 (409)
Q Consensus        72 ~L~L~~n~l~~~~p~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~  149 (409)
                      +|.|++-++. .+|..  -..+..-...|++.|++. ++|..+..+..|+.+.+..|.+. .+|..++++..|.+++++.
T Consensus        54 ~l~Ls~rrlk-~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~  130 (722)
T KOG0532|consen   54 RLLLSGRRLK-EFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSS  130 (722)
T ss_pred             ccccccchhh-cCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhcc
Confidence            3455555554 34422  133444556677777777 67777777777777777777777 6777777777777777777


Q ss_pred             ccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCch
Q 048551          150 IKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPP  229 (409)
Q Consensus       150 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~  229 (409)
                      |++. .+|..++.++ |+.|-+++|+++ .+|..++....|..|+.+.|.+...++.++++.+|+.|.+..|++. .+|+
T Consensus       131 NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~  206 (722)
T KOG0532|consen  131 NQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPE  206 (722)
T ss_pred             chhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCH
Confidence            7776 6677777665 677777777776 6677777777777777777777776667777777777777777777 7777


Q ss_pred             HHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCcccc
Q 048551          230 VIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKS  276 (409)
Q Consensus       230 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  276 (409)
                      .+. .++ |..||++.|+++ .+|-.|.+|++|++|-|.+|.+...+
T Consensus       207 El~-~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPP  250 (722)
T KOG0532|consen  207 ELC-SLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPP  250 (722)
T ss_pred             HHh-CCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCCh
Confidence            776 444 677777777777 67777777777777777777777655

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.44  E-value=2.3e-15  Score=143.41  Aligned_cols=192  Identities=26%  Similarity=0.335  Sum_probs=167.1

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC  148 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  148 (409)
                      ..+..|++.|++. .+|..+..+..|+.+.|..|.+. .+|..+..+..|.++|++.|++. .+|..++.++ |+.|-++
T Consensus        76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s  151 (722)
T KOG0532|consen   76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS  151 (722)
T ss_pred             chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence            4567899999999 99999999999999999999998 89999999999999999999999 8898888775 8999999


Q ss_pred             cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCc
Q 048551          149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLP  228 (409)
Q Consensus       149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p  228 (409)
                      +|+++ .+|..++....|..||.+.|++. .+|..++++.+|+.|.+..|++...++.+..++ |..||++.|+++ .+|
T Consensus       152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNkis-~iP  227 (722)
T KOG0532|consen  152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNKIS-YLP  227 (722)
T ss_pred             cCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCcee-ecc
Confidence            99998 88999999999999999999998 778889999999999999999999888776554 889999999999 999


Q ss_pred             hHHhhCCCccceeeccccccccccchhhhcCC---CCCEEEcccC
Q 048551          229 PVIGAKLPNLRKIVIALNNFTGPLPDSFSNAS---NRERLELSYN  270 (409)
Q Consensus       229 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~---~L~~L~Ls~N  270 (409)
                      ..|. +|+.|++|.|.+|.++ ..|..+.-..   --++|+...+
T Consensus       228 v~fr-~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  228 VDFR-KMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             hhhh-hhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence            9998 9999999999999998 5565543222   2344555444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.38  E-value=3.5e-13  Score=131.24  Aligned_cols=196  Identities=26%  Similarity=0.380  Sum_probs=143.9

Q ss_pred             EEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCC-CCcEEEcCCCcCCccCCcccCCCCCCcEEEeecc
Q 048551           72 FINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRS-KLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVI  150 (409)
Q Consensus        72 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n  150 (409)
                      .+++..+.+. .....+..++.++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..++.+++|+.|++++|
T Consensus        97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            4677777764 22334555677888888888888 5666666664 8888888888888 66666788888888888888


Q ss_pred             cccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchH
Q 048551          151 KLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPV  230 (409)
Q Consensus       151 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~  230 (409)
                      +++ .+|...+..+.|+.|++++|++. .+|........|+++.+++|.....+..+.++.++..+.+.+|++. .++..
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~  250 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPES  250 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccch
Confidence            888 66666657788888888888887 5565555556688888888865555556777788888888888776 44555


Q ss_pred             HhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCcccc
Q 048551          231 IGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKS  276 (409)
Q Consensus       231 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  276 (409)
                      +. .++++++|++++|.++. ++. ++...+++.|++++|.+....
T Consensus       251 ~~-~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~  293 (394)
T COG4886         251 IG-NLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNAL  293 (394)
T ss_pred             hc-cccccceeccccccccc-ccc-ccccCccCEEeccCccccccc
Confidence            55 77778888888888873 333 777888888888888876543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.30  E-value=1.7e-12  Score=126.53  Aligned_cols=180  Identities=27%  Similarity=0.412  Sum_probs=155.9

Q ss_pred             CCcEEEecCCCCccccCccccCCC-CCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551           69 SLRFINIADNGVQGEIPNELGNLV-RLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF  147 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  147 (409)
                      .++.+++.+|.++ .++.....+. +|+.|++++|++. .+|..+..++.|+.|++++|+++ .+|...+..+.|+.|++
T Consensus       117 ~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         117 NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             ceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence            5889999999999 8887888885 9999999999999 66677899999999999999999 67776668899999999


Q ss_pred             ecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccC
Q 048551          148 CVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNL  227 (409)
Q Consensus       148 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~  227 (409)
                      ++|+++ .+|........|+++.+++|.+. ..+..+.++.++..+.+.+|++...+..+..+++++.|++++|.++ .+
T Consensus       194 s~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~-~i  270 (394)
T COG4886         194 SGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS-SI  270 (394)
T ss_pred             cCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccchhccccccceecccccccc-cc
Confidence            999999 78877667778999999999654 5666788899999999999998876557888999999999999998 77


Q ss_pred             chHHhhCCCccceeeccccccccccchhh
Q 048551          228 PPVIGAKLPNLRKIVIALNNFTGPLPDSF  256 (409)
Q Consensus       228 p~~~~~~l~~L~~L~L~~n~l~~~~p~~l  256 (409)
                      +. ++ .+.+++.|++++|.+....|...
T Consensus       271 ~~-~~-~~~~l~~L~~s~n~~~~~~~~~~  297 (394)
T COG4886         271 SS-LG-SLTNLRELDLSGNSLSNALPLIA  297 (394)
T ss_pred             cc-cc-ccCccCEEeccCccccccchhhh
Confidence            66 55 78999999999999986666543

>PLN03150 hypothetical protein; Provisional

Probab=99.23  E-value=2e-11  Score=124.84  Aligned_cols=116  Identities=29%  Similarity=0.528  Sum_probs=86.6

Q ss_pred             cceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccCChhccCCCCCC
Q 048551          238 LRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLD  317 (409)
Q Consensus       238 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~  317 (409)
                      ++.|+|++|.+.|.+|..+..+++|+.|+|++|+++                              +.+|..++.     
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~------------------------------g~iP~~~~~-----  464 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIR------------------------------GNIPPSLGS-----  464 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCccc------------------------------CcCChHHhC-----
Confidence            445555555555555555555555555555555554                              477877654     


Q ss_pred             ccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC--CCCCCCCeecccCCCCceecCCCCCCC
Q 048551          318 SLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK--GVFNNKTRISLAGNGKLCGGFDGLHSP  394 (409)
Q Consensus       318 ~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~--~~~~~L~~L~l~~Np~l~g~~p~~~~~  394 (409)
                            +++|+.|+|++|+++|.+|..+.++++|++|+| +|++.|.+|..  ..+.++..+++.+|+.+||. |.  ++
T Consensus       465 ------l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~-p~--l~  535 (623)
T PLN03150        465 ------ITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGI-PG--LR  535 (623)
T ss_pred             ------CCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCC-CC--CC
Confidence                  467799999999999999999999999999999 99999999986  33456778999999999984 43  56


Q ss_pred             CCC
Q 048551          395 SCH  397 (409)
Q Consensus       395 ~~~  397 (409)
                      .|.
T Consensus       536 ~C~  538 (623)
T PLN03150        536 ACG  538 (623)
T ss_pred             CCc
Confidence            785

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.18  E-value=9.2e-12  Score=110.48  Aligned_cols=108  Identities=22%  Similarity=0.178  Sum_probs=68.2

Q ss_pred             ccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccc
Q 048551          160 IQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLR  239 (409)
Q Consensus       160 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~  239 (409)
                      ....+.|+++|+++|.|+ .+.+++.-.+.++.|+++.|.+..... +..+++|+.||+++|.++ .+..+-. .+-+++
T Consensus       280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~-KLGNIK  355 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLA-ECVGWHL-KLGNIK  355 (490)
T ss_pred             cchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhH-hhhhhHh-hhcCEe
Confidence            334456777777777776 455555556777777777777765433 566677777777777776 4443333 566777


Q ss_pred             eeeccccccccccchhhhcCCCCCEEEcccCcCc
Q 048551          240 KIVIALNNFTGPLPDSFSNASNRERLELSYNQFR  273 (409)
Q Consensus       240 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  273 (409)
                      +|.|++|.+..  -..++++-+|..||+++|+|.
T Consensus       356 tL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie  387 (490)
T KOG1259|consen  356 TLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIE  387 (490)
T ss_pred             eeehhhhhHhh--hhhhHhhhhheeccccccchh
Confidence            77777776652  234556666677777777664

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.12  E-value=3.5e-11  Score=101.87  Aligned_cols=108  Identities=24%  Similarity=0.297  Sum_probs=29.3

Q ss_pred             CCCCCCEEEccCCcccccCCcccc-CCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccc-cCCCCCc
Q 048551           90 NLVRLEKLILANNSFSGTIPTNLS-LRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASI-QNLSSHL  167 (409)
Q Consensus        90 ~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~  167 (409)
                      +...+++|+|++|.|+. +. .+. .+.+|+.|++++|.++ .+. .+..++.|++|++++|.++ .+.+.+ ..+++|+
T Consensus        17 n~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred             ccccccccccccccccc-cc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence            34456777777777663 22 233 4566677777777666 232 3555667777777777776 333333 3466677


Q ss_pred             EEeCCCCCCCCCC-CCCCCCCCCCcEEEccCCcCcc
Q 048551          168 EADSNRNNFGGKI-PESPGQLRSLFYLNVGGNQFSG  202 (409)
Q Consensus       168 ~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~  202 (409)
                      +|++++|+|...- -..+..+++|++|++.+|++..
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence            7777776665311 1223445555666665555543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=1.2e-11  Score=114.87  Aligned_cols=138  Identities=24%  Similarity=0.211  Sum_probs=78.7

Q ss_pred             CCCCCcEEEeecccccccCC--ccccCCCCCcEEeCCCCCCCCCCC--CCCCCCCCCcEEEccCCcCcccCc--ccCCCC
Q 048551          138 NLFKLEKLSFCVIKLTGQLP--ASIQNLSSHLEADSNRNNFGGKIP--ESPGQLRSLFYLNVGGNQFSGMFL--PVYNLS  211 (409)
Q Consensus       138 ~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~--~~~~l~  211 (409)
                      ++.+|+++.|.++.+. ..+  +....+++++.||+++|-+....+  ....++++|+.|+++.|++.....  .-..++
T Consensus       119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            4667777777777665 222  245567777777777776653211  223456777777777777654433  223456


Q ss_pred             CCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCcccc
Q 048551          212 SLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKS  276 (409)
Q Consensus       212 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  276 (409)
                      .|+.|.++.|.++-.--.++...+|+|+.|++..|...........-+..|+.|||++|++-+.+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~  262 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD  262 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc
Confidence            67777777777663222223235677777777776422222223344556677777777665443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.09  E-value=1e-10  Score=99.10  Aligned_cols=109  Identities=22%  Similarity=0.284  Sum_probs=33.1

Q ss_pred             CCCCCcEEeCCCCCCCCCCCCCCC-CCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccce
Q 048551          162 NLSSHLEADSNRNNFGGKIPESPG-QLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRK  240 (409)
Q Consensus       162 ~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~  240 (409)
                      +..++++|++.+|.|.. +. .++ .+.+|+.|++++|.++... .+..++.|++|++++|+++ .++..+...+++|++
T Consensus        17 n~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQE   92 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred             ccccccccccccccccc-cc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCE
Confidence            33455666666666652 22 233 3556666666666666542 4555667777777777776 554444324677777


Q ss_pred             eeccccccccc-cchhhhcCCCCCEEEcccCcCcc
Q 048551          241 IVIALNNFTGP-LPDSFSNASNRERLELSYNQFRG  274 (409)
Q Consensus       241 L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~  274 (409)
                      |++++|++... .-..+..+++|+.|++.+|+++.
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence            77777776532 11345667777777777777764

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.07  E-value=2.5e-10  Score=119.64  Aligned_cols=274  Identities=22%  Similarity=0.187  Sum_probs=170.4

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCc--ccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEE
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNS--FSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS  146 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  146 (409)
                      .++++.+-+|.+. .++.... .+.|++|-+..|.  +.......|..++.|++||+++|.--+.+|..++.+-+|++|+
T Consensus       524 ~~rr~s~~~~~~~-~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~  601 (889)
T KOG4658|consen  524 SVRRMSLMNNKIE-HIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD  601 (889)
T ss_pred             heeEEEEeccchh-hccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence            6677888888876 5554443 3479999999996  5534445578899999999999877778999999999999999


Q ss_pred             eecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc---ccCCCCCCcEEEeecCcC
Q 048551          147 FCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL---PVYNLSSLEMIYLHDNRL  223 (409)
Q Consensus       147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~l~~L~~L~l~~n~l  223 (409)
                      ++++.+. .+|..+.++..|.+|++..+.-...+|.....+.+|++|.+..........   .+.++..|+.+.......
T Consensus       602 L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~  680 (889)
T KOG4658|consen  602 LSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV  680 (889)
T ss_pred             ccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh
Confidence            9999998 899999999999999999887665667767779999999987655322211   445556666665544332


Q ss_pred             cccCchHHhhCCCccc----eeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCcccc
Q 048551          224 NGNLPPVIGAKLPNLR----KIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGR  299 (409)
Q Consensus       224 ~~~~p~~~~~~l~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~  299 (409)
                        .+-..+. .+..|.    .+.+.++... ..+..+..+.+|+.|.+.++.+.........  +. ..++    .+.  
T Consensus       681 --~~~e~l~-~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~--~~-~~~~----~f~--  747 (889)
T KOG4658|consen  681 --LLLEDLL-GMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEE--SL-IVLL----CFP--  747 (889)
T ss_pred             --HhHhhhh-hhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhccccc--cc-chhh----hHH--
Confidence              1111111 233333    3333333332 3455677888999999988887643211100  00 0000    000  


Q ss_pred             ccccccCChhccCCCCCCccc-cCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-ecccee
Q 048551          300 QQNICYLPTGISNLVNLDSLA-TDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDG  362 (409)
Q Consensus       300 ~~~l~~ip~~~~~l~~L~~L~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~  362 (409)
                        .  .....+.++..++.++ ..-.++|+.|.+.+++....+......+..++.+-+ .+.+.+
T Consensus       748 --~--l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~  808 (889)
T KOG4658|consen  748 --N--LSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEG  808 (889)
T ss_pred             --H--HHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccccccc
Confidence              0  0000112222233332 123578888888877666555555555555555444 444443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.05  E-value=1.5e-11  Score=109.13  Aligned_cols=129  Identities=19%  Similarity=0.213  Sum_probs=70.5

Q ss_pred             CCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEE
Q 048551          114 LRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYL  193 (409)
Q Consensus       114 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  193 (409)
                      -.+.|+++|+++|.|+ .+.++..-.+.++.|++++|.+. .+. .++.+++|+.||+++|.++ .+..+=.++-+++.|
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL  357 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence            3445566666666665 45555555566666666666665 222 2555666666666666655 222222344556666


Q ss_pred             EccCCcCcccCcccCCCCCCcEEEeecCcCcccCc--hHHhhCCCccceeeccccccc
Q 048551          194 NVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLP--PVIGAKLPNLRKIVIALNNFT  249 (409)
Q Consensus       194 ~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p--~~~~~~l~~L~~L~L~~n~l~  249 (409)
                      .++.|.+... ..+.++-+|..||+++|++. .+.  ..++ ++|-|+++.|.+|.+.
T Consensus       358 ~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG-~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  358 KLAQNKIETL-SGLRKLYSLVNLDLSSNQIE-ELDEVNHIG-NLPCLETLRLTGNPLA  412 (490)
T ss_pred             ehhhhhHhhh-hhhHhhhhheeccccccchh-hHHHhcccc-cccHHHHHhhcCCCcc
Confidence            6666655442 23455556666666666654 222  2344 5666666666666665

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=3.3e-11  Score=112.03  Aligned_cols=207  Identities=18%  Similarity=0.113  Sum_probs=144.0

Q ss_pred             CCcEEEecCCCCccccC-ccccCCCCCCEEEccCCcccccC--CccccCCCCCcEEEcCCCcCCccCCcc-cCCCCCCcE
Q 048551           69 SLRFINIADNGVQGEIP-NELGNLVRLEKLILANNSFSGTI--PTNLSLRSKLMLFFANRNILAGEIPAE-IGNLFKLEK  144 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~  144 (409)
                      .|+.+.|.++.+..... .....+++++.|||+.|-+....  ..-...+++|+.|+++.|++....... -..+++|+.
T Consensus       122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~  201 (505)
T KOG3207|consen  122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ  201 (505)
T ss_pred             hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence            67888888887762221 35677889999999999776432  233467899999999999887322221 235778999


Q ss_pred             EEeeccccccc-CCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc--ccCCCCCCcEEEeecC
Q 048551          145 LSFCVIKLTGQ-LPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL--PVYNLSSLEMIYLHDN  221 (409)
Q Consensus       145 L~L~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~l~~L~~L~l~~n  221 (409)
                      |.++.|.++.. +-..+..+++|+.|++..|.....-......+..|+.|+|++|++.....  ..+.++.|+.|+++.+
T Consensus       202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t  281 (505)
T KOG3207|consen  202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST  281 (505)
T ss_pred             EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc
Confidence            99999988742 22334577899999999986433444445567889999999998877663  6778889999999998


Q ss_pred             cCccc-CchH----HhhCCCccceeeccccccccc-cchhhhcCCCCCEEEcccCcCccc
Q 048551          222 RLNGN-LPPV----IGAKLPNLRKIVIALNNFTGP-LPDSFSNASNRERLELSYNQFRGK  275 (409)
Q Consensus       222 ~l~~~-~p~~----~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~  275 (409)
                      .+... .|+.    ....+++|++|++..|++... .-..+..+++|+.|....|.++..
T Consensus       282 gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  282 GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence            88731 1221    112568899999999988621 112345566777777777777654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.01  E-value=3e-11  Score=109.35  Aligned_cols=227  Identities=18%  Similarity=0.142  Sum_probs=158.3

Q ss_pred             CCcEEEecCCCCcc----ccCccccCCCCCCEEEccCC---cccccCCcc-------ccCCCCCcEEEcCCCcCCccCCc
Q 048551           69 SLRFINIADNGVQG----EIPNELGNLVRLEKLILANN---SFSGTIPTN-------LSLRSKLMLFFANRNILAGEIPA  134 (409)
Q Consensus        69 ~l~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n---~l~~~~~~~-------~~~l~~L~~L~l~~n~l~~~~p~  134 (409)
                      .++.++|++|.+.-    .+...+.+.++|+..++++-   ....++|+.       +...++|++++||+|-+....+.
T Consensus        31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~  110 (382)
T KOG1909|consen   31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIR  110 (382)
T ss_pred             ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchH
Confidence            78899999998863    24456777788998888864   233345543       35677999999999988744443


Q ss_pred             c----cCCCCCCcEEEeecccccccCC-------------ccccCCCCCcEEeCCCCCCCCCC----CCCCCCCCCCcEE
Q 048551          135 E----IGNLFKLEKLSFCVIKLTGQLP-------------ASIQNLSSHLEADSNRNNFGGKI----PESPGQLRSLFYL  193 (409)
Q Consensus       135 ~----~~~l~~L~~L~L~~n~l~~~~p-------------~~l~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L  193 (409)
                      .    +.++..|++|+|.+|.+.-.-.             ...+.-+.|+.+...+|++...-    ...|...+.|+.+
T Consensus       111 ~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leev  190 (382)
T KOG1909|consen  111 GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEV  190 (382)
T ss_pred             HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceE
Confidence            3    4568899999999998752111             12344578999999999876322    2345566889999


Q ss_pred             EccCCcCcccC--c---ccCCCCCCcEEEeecCcCccc----CchHHhhCCCccceeeccccccccccchhh-----hcC
Q 048551          194 NVGGNQFSGMF--L---PVYNLSSLEMIYLHDNRLNGN----LPPVIGAKLPNLRKIVIALNNFTGPLPDSF-----SNA  259 (409)
Q Consensus       194 ~l~~n~l~~~~--~---~~~~l~~L~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l-----~~l  259 (409)
                      .+..|.+...-  .   .+..++.|+.||+.+|-++..    +...+. .+++|+.|++++|.+...-...|     ...
T Consensus       191 r~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~-s~~~L~El~l~dcll~~~Ga~a~~~al~~~~  269 (382)
T KOG1909|consen  191 RLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALS-SWPHLRELNLGDCLLENEGAIAFVDALKESA  269 (382)
T ss_pred             EEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhc-ccchheeecccccccccccHHHHHHHHhccC
Confidence            99998875221  1   677899999999999988733    223333 66789999999998875433333     346


Q ss_pred             CCCCEEEcccCcCccccchhhh-----hcccCcEEecccCCcc
Q 048551          260 SNRERLELSYNQFRGKSIWRSA-----ATSYSQRLNDDDQNHH  297 (409)
Q Consensus       260 ~~L~~L~Ls~N~l~~~~~~~~~-----l~~l~~~L~l~~n~l~  297 (409)
                      +.|++|.+.+|.|+........     .+.+ ..|++++|++.
T Consensus       270 p~L~vl~l~gNeIt~da~~~la~~~~ek~dL-~kLnLngN~l~  311 (382)
T KOG1909|consen  270 PSLEVLELAGNEITRDAALALAACMAEKPDL-EKLNLNGNRLG  311 (382)
T ss_pred             CCCceeccCcchhHHHHHHHHHHHHhcchhh-HHhcCCccccc
Confidence            8899999999998765421111     3445 88999999883

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.98  E-value=8.7e-11  Score=106.44  Aligned_cols=186  Identities=21%  Similarity=0.200  Sum_probs=99.5

Q ss_pred             cccCCCCCCEEEccCCccccc----CCccccCCCCCcEEEcCCC---cCCccCCcc-------cCCCCCCcEEEeecccc
Q 048551           87 ELGNLVRLEKLILANNSFSGT----IPTNLSLRSKLMLFFANRN---ILAGEIPAE-------IGNLFKLEKLSFCVIKL  152 (409)
Q Consensus        87 ~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n---~l~~~~p~~-------~~~l~~L~~L~L~~n~l  152 (409)
                      ....+..++.++|++|.+..+    +...+.+.+.|+..++++-   +....+|+.       +..+++|++++||.|.+
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~  104 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF  104 (382)
T ss_pred             HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence            455677888999999988643    3445566778888877643   222334432       34567888888888887


Q ss_pred             cccCCcc----ccCCCCCcEEeCCCCCCCCCC-------------CCCCCCCCCCcEEEccCCcCcccCc-----ccCCC
Q 048551          153 TGQLPAS----IQNLSSHLEADSNRNNFGGKI-------------PESPGQLRSLFYLNVGGNQFSGMFL-----PVYNL  210 (409)
Q Consensus       153 ~~~~p~~----l~~l~~L~~L~l~~n~l~~~~-------------~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~l  210 (409)
                      ....++.    +.++..|++|.+.+|.+.-.-             ....+.-++|+++..+.|++.....     .+...
T Consensus       105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~  184 (382)
T KOG1909|consen  105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH  184 (382)
T ss_pred             CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence            6544443    345677888888887765111             1112233455555555555543221     23334


Q ss_pred             CCCcEEEeecCcCccc----CchHHhhCCCccceeeccccccccc----cchhhhcCCCCCEEEcccCcCc
Q 048551          211 SSLEMIYLHDNRLNGN----LPPVIGAKLPNLRKIVIALNNFTGP----LPDSFSNASNRERLELSYNQFR  273 (409)
Q Consensus       211 ~~L~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~  273 (409)
                      +.|+.+.+..|.+...    +...+. .+++|+.|||.+|-++..    +...+..+++|++|+++++.+.
T Consensus       185 ~~leevr~~qN~I~~eG~~al~eal~-~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  185 PTLEEVRLSQNGIRPEGVTALAEALE-HCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             cccceEEEecccccCchhHHHHHHHH-hCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence            4555555555544311    111222 445555555555544421    1223344445555555555444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.92  E-value=1.1e-10  Score=114.16  Aligned_cols=151  Identities=22%  Similarity=0.225  Sum_probs=78.9

Q ss_pred             CCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEE
Q 048551           90 NLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEA  169 (409)
Q Consensus        90 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  169 (409)
                      .+..++.+.++.|.+. .+-..+..+++|+.|++.+|.|. .+...+..+++|++|++++|.|+..  ..+..++.|+.|
T Consensus        70 ~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L  145 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL  145 (414)
T ss_pred             HhHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence            3455555556666665 22333555666666666666666 2333355566666666666666532  224455556666


Q ss_pred             eCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcc-cCCCCCCcEEEeecCcCcccCchHHhhCCCccceeecccccc
Q 048551          170 DSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLP-VYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNF  248 (409)
Q Consensus       170 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l  248 (409)
                      ++++|.++..  ..+..+.+|+.+++++|.+...... ...+.+++.+++.+|.+. .+.. +. .+..+..+++..|.+
T Consensus       146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~-~i~~-~~-~~~~l~~~~l~~n~i  220 (414)
T KOG0531|consen  146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR-EIEG-LD-LLKKLVLLSLLDNKI  220 (414)
T ss_pred             eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh-cccc-hH-HHHHHHHhhcccccc
Confidence            6666666521  2334455666666666666544322 345555666666666554 2221 11 233344445555555


Q ss_pred             c
Q 048551          249 T  249 (409)
Q Consensus       249 ~  249 (409)
                      +
T Consensus       221 ~  221 (414)
T KOG0531|consen  221 S  221 (414)
T ss_pred             e
Confidence            4

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.84  E-value=2.6e-10  Score=111.57  Aligned_cols=199  Identities=25%  Similarity=0.260  Sum_probs=149.0

Q ss_pred             ecCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEE
Q 048551           66 TCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKL  145 (409)
Q Consensus        66 ~c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  145 (409)
                      .|..+..+++..|.+. .+-..+..+++|+.|++.+|+|.. +...+..+++|++|++++|.|+...+  +..++.|+.|
T Consensus        70 ~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L  145 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKEL  145 (414)
T ss_pred             HhHhHHhhccchhhhh-hhhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccccc--hhhccchhhh
Confidence            4556777778888887 444568889999999999999984 44447789999999999999985444  6677889999


Q ss_pred             EeecccccccCCccccCCCCCcEEeCCCCCCCCCCC-CCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCc
Q 048551          146 SFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIP-ESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLN  224 (409)
Q Consensus       146 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~  224 (409)
                      ++++|.++.  ...+..++.|+.+++++|.+...-+ . ...+.+++.+.+.+|.+..... +.....+..+++..|.++
T Consensus       146 ~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~-~~~~~~l~~~~l~~n~i~  221 (414)
T KOG0531|consen  146 NLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG-LDLLKKLVLLSLLDNKIS  221 (414)
T ss_pred             eeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc-hHHHHHHHHhhcccccce
Confidence            999999983  2356668999999999999985444 2 4678889999999998876433 333445555588888887


Q ss_pred             ccCchHHhhCCCc--cceeeccccccccccchhhhcCCCCCEEEcccCcCcccc
Q 048551          225 GNLPPVIGAKLPN--LRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKS  276 (409)
Q Consensus       225 ~~~p~~~~~~l~~--L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  276 (409)
                       .+....  .+..  |+.+++++|.+. ..+..+..+..+..+++..|++....
T Consensus       222 -~~~~l~--~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~  271 (414)
T KOG0531|consen  222 -KLEGLN--ELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE  271 (414)
T ss_pred             -eccCcc--cchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc
Confidence             332211  2233  889999999987 44456777888999999998887643

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.83  E-value=3.5e-09  Score=73.77  Aligned_cols=57  Identities=28%  Similarity=0.266  Sum_probs=21.8

Q ss_pred             CCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecc
Q 048551           94 LEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVI  150 (409)
Q Consensus        94 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n  150 (409)
                      |++|++++|+++...+..|.++++|++|++++|.++...|..|.++++|++|++++|
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            334444444443222233333444444444444433322333334444444444433

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.80  E-value=1.9e-09  Score=113.09  Aligned_cols=130  Identities=20%  Similarity=0.189  Sum_probs=101.4

Q ss_pred             ecCCCcEEEecCCC--CccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCc
Q 048551           66 TCASLRFINIADNG--VQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLE  143 (409)
Q Consensus        66 ~c~~l~~L~L~~n~--l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~  143 (409)
                      .|..+++|-+.+|.  +....+..|..++.|++|||++|.=-+.+|..++.+-+|++|++++..+. .+|..++++..|.
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~  621 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI  621 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence            35578999999986  55233445888999999999998776799999999999999999999999 8999999999999


Q ss_pred             EEEeecccccccCCccccCCCCCcEEeCCCCCCC--CCCCCCCCCCCCCcEEEcc
Q 048551          144 KLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFG--GKIPESPGQLRSLFYLNVG  196 (409)
Q Consensus       144 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~  196 (409)
                      +|++..+.....+|.....+++|++|.+......  ...-..+.++..|+.+...
T Consensus       622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~  676 (889)
T KOG4658|consen  622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT  676 (889)
T ss_pred             eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence            9999998876566777777999999998765422  1222233455555555543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.77  E-value=7.7e-09  Score=72.02  Aligned_cols=60  Identities=27%  Similarity=0.363  Sum_probs=55.4

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcC
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNIL  128 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  128 (409)
                      +|++|++++|+++...+..|..+++|++|++++|.++...+..|.++++|++|++++|++
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            689999999999966667899999999999999999988888999999999999999975

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.56  E-value=3.2e-09  Score=104.64  Aligned_cols=196  Identities=24%  Similarity=0.254  Sum_probs=116.0

Q ss_pred             CCCCcEEEeecccccccC-CccccCCCCCcEEeCCCCCCCCCCCCCCCCC-CCCcEEEccCCcCccc---C-------cc
Q 048551          139 LFKLEKLSFCVIKLTGQL-PASIQNLSSHLEADSNRNNFGGKIPESPGQL-RSLFYLNVGGNQFSGM---F-------LP  206 (409)
Q Consensus       139 l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~---~-------~~  206 (409)
                      +++++.|.+-.-.-.+.. |-.+..+.+|+.|.+.++++..  ...+..+ ..|++|.- .|.+...   +       ..
T Consensus        83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~n  159 (1096)
T KOG1859|consen   83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISN  159 (1096)
T ss_pred             HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhcccccc
Confidence            344444444333322222 5567777888888888888763  1122222 23444432 2222111   1       01


Q ss_pred             cCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccC
Q 048551          207 VYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYS  286 (409)
Q Consensus       207 ~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~  286 (409)
                      -..+..|...+.++|.++ .+...+. -++.++.|+|++|+++..  +.+..+++|++|||++|+++.++          
T Consensus       160 s~~Wn~L~~a~fsyN~L~-~mD~SLq-ll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp----------  225 (1096)
T KOG1859|consen  160 SPVWNKLATASFSYNRLV-LMDESLQ-LLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVP----------  225 (1096)
T ss_pred             chhhhhHhhhhcchhhHH-hHHHHHH-HHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcccc----------
Confidence            123456888889999988 6666665 678899999999999843  37888999999999999987543          


Q ss_pred             cEEecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCC
Q 048551          287 QRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVP  365 (409)
Q Consensus       287 ~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p  365 (409)
                                        ++..             .++. |..|.+++|.++.  -..+.++.+|+.||+ +|-+.+.-.
T Consensus       226 ------------------~l~~-------------~gc~-L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hse  271 (1096)
T KOG1859|consen  226 ------------------QLSM-------------VGCK-LQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSE  271 (1096)
T ss_pred             ------------------ccch-------------hhhh-heeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchh
Confidence                              0100             1112 5666666666652  234566666667777 555543322


Q ss_pred             CC--CCCCCCCeecccCCCCce
Q 048551          366 TK--GVFNNKTRISLAGNGKLC  385 (409)
Q Consensus       366 ~~--~~~~~L~~L~l~~Np~l~  385 (409)
                      -.  ..+..|+.|.|.|||.-|
T Consensus       272 L~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  272 LEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             hhHHHHHHHHHHHhhcCCcccc
Confidence            11  445667777777777555

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.53  E-value=3.1e-09  Score=104.73  Aligned_cols=127  Identities=22%  Similarity=0.129  Sum_probs=68.2

Q ss_pred             CCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCC-CCCCCCCcEEEc
Q 048551          117 KLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPES-PGQLRSLFYLNV  195 (409)
Q Consensus       117 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l  195 (409)
                      .|.+.+.++|.++ .+..++.-++.++.|+|++|+++..  +.+..++.|++||+++|.+. .+|.. ... ..|+.|.+
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~g-c~L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVG-CKLQLLNL  239 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhh-hhheeeee
Confidence            3555556666655 4444555566666666666666522  25566666666666666665 33321 122 23666666


Q ss_pred             cCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccc
Q 048551          196 GGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFT  249 (409)
Q Consensus       196 ~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~  249 (409)
                      .+|.++... .+.++.+|+.||+++|-+.+.---.+...+..|+.|.|.+|.+-
T Consensus       240 rnN~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  240 RNNALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cccHHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            666655432 45566666666666665553211111113455666666666554

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.46  E-value=2.1e-07  Score=59.48  Aligned_cols=39  Identities=51%  Similarity=0.839  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHhCC-CCCCCCCCCCCC--CCCCCceeeecC
Q 048551           30 ETDRLALLAIKSQLH-DPLEVTSSLTNS--VNLCEWTGVTCA   68 (409)
Q Consensus        30 ~~~~~~l~~~~~~~~-~~~~~~~~w~~~--~~~c~~~g~~c~   68 (409)
                      ++|+++|++||+++. +|...+.+|...  .++|.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            579999999999997 577789999987  799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.27  E-value=1.7e-07  Score=82.55  Aligned_cols=205  Identities=17%  Similarity=0.121  Sum_probs=126.3

Q ss_pred             CCcEEEecCCCCccc----cCccccCCCCCCEEEccCCc---ccccCC-------ccccCCCCCcEEEcCCCcCCccCCc
Q 048551           69 SLRFINIADNGVQGE----IPNELGNLVRLEKLILANNS---FSGTIP-------TNLSLRSKLMLFFANRNILAGEIPA  134 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~---l~~~~~-------~~~~~l~~L~~L~l~~n~l~~~~p~  134 (409)
                      .++.++||+|-|...    +...+.+-.+|+..+++.--   ..+.++       ..+.++++|+..+++.|.+....|+
T Consensus        31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e  110 (388)
T COG5238          31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE  110 (388)
T ss_pred             ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence            678889999988643    33455666778888777642   122233       2346788899999999988766665


Q ss_pred             c----cCCCCCCcEEEeecccccccCCcc-------------ccCCCCCcEEeCCCCCCCCCCCC-----CCCCCCCCcE
Q 048551          135 E----IGNLFKLEKLSFCVIKLTGQLPAS-------------IQNLSSHLEADSNRNNFGGKIPE-----SPGQLRSLFY  192 (409)
Q Consensus       135 ~----~~~l~~L~~L~L~~n~l~~~~p~~-------------l~~l~~L~~L~l~~n~l~~~~~~-----~~~~l~~L~~  192 (409)
                      .    +.+-+.|++|.+++|.+...-...             ..+-|.|+.+....|++.. .+.     .+..-..|+.
T Consensus       111 ~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh~~lk~  189 (388)
T COG5238         111 ELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESHENLKE  189 (388)
T ss_pred             HHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhhcCcee
Confidence            4    456778888888888775211111             2344677788777777642 111     1222256777


Q ss_pred             EEccCCcCccc--Cc----ccCCCCCCcEEEeecCcCcccC----chHHhhCCCccceeeccccccccccchhh------
Q 048551          193 LNVGGNQFSGM--FL----PVYNLSSLEMIYLHDNRLNGNL----PPVIGAKLPNLRKIVIALNNFTGPLPDSF------  256 (409)
Q Consensus       193 L~l~~n~l~~~--~~----~~~~l~~L~~L~l~~n~l~~~~----p~~~~~~l~~L~~L~L~~n~l~~~~p~~l------  256 (409)
                      +.+..|.+.-.  ..    .++.+.+|+.||+.+|-++-.-    ...+. .++.|+.|.+..|.++......+      
T Consensus       190 vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~-~W~~lrEL~lnDClls~~G~~~v~~~f~e  268 (388)
T COG5238         190 VKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALC-EWNLLRELRLNDCLLSNEGVKSVLRRFNE  268 (388)
T ss_pred             EEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhc-ccchhhhccccchhhccccHHHHHHHhhh
Confidence            77777776432  11    3456677888888888776221    12223 45667778887777764333322      


Q ss_pred             hcCCCCCEEEcccCcCccc
Q 048551          257 SNASNRERLELSYNQFRGK  275 (409)
Q Consensus       257 ~~l~~L~~L~Ls~N~l~~~  275 (409)
                      ...++|..|-..+|.+.+.
T Consensus       269 ~~~p~l~~L~~~Yne~~~~  287 (388)
T COG5238         269 KFVPNLMPLPGDYNERRGG  287 (388)
T ss_pred             hcCCCccccccchhhhcCc
Confidence            2346677777777776654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=1.8e-08  Score=89.73  Aligned_cols=175  Identities=17%  Similarity=0.074  Sum_probs=105.8

Q ss_pred             CCCEEEccCCccccc-CCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCC--ccccCCCCCcEE
Q 048551           93 RLEKLILANNSFSGT-IPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLP--ASIQNLSSHLEA  169 (409)
Q Consensus        93 ~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L  169 (409)
                      .|++|||++..|+.. ...-++.+.+|+.|.+.++++.+.+...++.-.+|+.|+++.+.--....  --+.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            477888887777632 22334667778888888888777666667777778888887653211111  124567778888


Q ss_pred             eCCCCCCCCCCCCC-CCC-CCCCcEEEccCCcCccc---Cc-ccCCCCCCcEEEeecCcC-cccCchHHhhCCCccceee
Q 048551          170 DSNRNNFGGKIPES-PGQ-LRSLFYLNVGGNQFSGM---FL-PVYNLSSLEMIYLHDNRL-NGNLPPVIGAKLPNLRKIV  242 (409)
Q Consensus       170 ~l~~n~l~~~~~~~-~~~-l~~L~~L~l~~n~l~~~---~~-~~~~l~~L~~L~l~~n~l-~~~~p~~~~~~l~~L~~L~  242 (409)
                      +++++.+....... +.+ -++|+.|+++++.-.-.   .. -...+++|.+||+++|.. +...-..++ +++.|++|.
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~~L~~lS  344 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFNYLQHLS  344 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hcchheeee
Confidence            88877765332211 111 15677777776532111   11 234677888888887643 322333455 677888888


Q ss_pred             ccccccccccchh---hhcCCCCCEEEcccC
Q 048551          243 IALNNFTGPLPDS---FSNASNRERLELSYN  270 (409)
Q Consensus       243 L~~n~l~~~~p~~---l~~l~~L~~L~Ls~N  270 (409)
                      ++.|..  .+|..   +...++|.+|+..+.
T Consensus       345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  345 LSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            877753  34443   456677777776554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.14  E-value=1e-06  Score=78.80  Aligned_cols=210  Identities=14%  Similarity=0.065  Sum_probs=118.2

Q ss_pred             cccCCCCCCEEEccCCcccccCC-ccc-cCCCCCcEEEcCCCcCCc--cCCcccCCCCCCcEEEeecccccccCCccccC
Q 048551           87 ELGNLVRLEKLILANNSFSGTIP-TNL-SLRSKLMLFFANRNILAG--EIPAEIGNLFKLEKLSFCVIKLTGQLPASIQN  162 (409)
Q Consensus        87 ~~~~l~~L~~L~L~~n~l~~~~~-~~~-~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~  162 (409)
                      .+.....++.+.+.++.|..+-. ..| ...+.++.+|+.+|.|++  .+...+.++|.|++|+++.|.+...+-..-..
T Consensus        40 ~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p  119 (418)
T KOG2982|consen   40 GVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLP  119 (418)
T ss_pred             eeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccc
Confidence            34444566677777776653211 112 356788899999998873  23334677889999999999887543322235


Q ss_pred             CCCCcEEeCCCCCCCCCC-CCCCCCCCCCcEEEccCCcCcccCc---ccCCCC-CCcEEEeecCcCcccC-chHHhhCCC
Q 048551          163 LSSHLEADSNRNNFGGKI-PESPGQLRSLFYLNVGGNQFSGMFL---PVYNLS-SLEMIYLHDNRLNGNL-PPVIGAKLP  236 (409)
Q Consensus       163 l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~l~-~L~~L~l~~n~l~~~~-p~~~~~~l~  236 (409)
                      ..+|+.|-+.+..+.... ...+..++.++.|+++.|.+...-.   ....+. .+++++...|...--. -..+...+|
T Consensus       120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fp  199 (418)
T KOG2982|consen  120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFP  199 (418)
T ss_pred             ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcc
Confidence            567888888887665322 2345577888888888885433211   122222 3444444444321000 001112456


Q ss_pred             ccceeecccccccccc-chhhhcCCCCCEEEcccCcCccccc-hhhh-hcccCcEEecccCCcc
Q 048551          237 NLRKIVIALNNFTGPL-PDSFSNASNRERLELSYNQFRGKSI-WRSA-ATSYSQRLNDDDQNHH  297 (409)
Q Consensus       237 ~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~-l~~l~~~L~l~~n~l~  297 (409)
                      ++..+.+..|.+.... ......++.+..|.|+.|+|.+... .... .+.+ ..|.+++|.+.
T Consensus       200 nv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l-~dlRv~~~Pl~  262 (418)
T KOG2982|consen  200 NVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQL-VDLRVSENPLS  262 (418)
T ss_pred             cchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchh-heeeccCCccc
Confidence            7777777777665321 1234455666677777777766541 1111 3333 56666666665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.14  E-value=6e-07  Score=79.26  Aligned_cols=114  Identities=21%  Similarity=0.209  Sum_probs=61.7

Q ss_pred             cCCCCCcEEeCCCCCCCCCCCCC----CCCCCCCcEEEccCCcCcccCc--------------ccCCCCCCcEEEeecCc
Q 048551          161 QNLSSHLEADSNRNNFGGKIPES----PGQLRSLFYLNVGGNQFSGMFL--------------PVYNLSSLEMIYLHDNR  222 (409)
Q Consensus       161 ~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~--------------~~~~l~~L~~L~l~~n~  222 (409)
                      .+++.|+.+++++|.+....|..    ++.-+.|++|.+++|.+--...              ...+-+.|+.++...|+
T Consensus        89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR  168 (388)
T COG5238          89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR  168 (388)
T ss_pred             hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence            34455555555555554433332    2333455555555554421110              12245667788888777


Q ss_pred             CcccCchHH----hhCCCccceeeccccccccccc-----hhhhcCCCCCEEEcccCcCccc
Q 048551          223 LNGNLPPVI----GAKLPNLRKIVIALNNFTGPLP-----DSFSNASNRERLELSYNQFRGK  275 (409)
Q Consensus       223 l~~~~p~~~----~~~l~~L~~L~L~~n~l~~~~p-----~~l~~l~~L~~L~Ls~N~l~~~  275 (409)
                      +. ..|...    ...-.+|+.+.+..|.|.....     ..+..+.+|+.||++.|-++-.
T Consensus       169 le-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~  229 (388)
T COG5238         169 LE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLE  229 (388)
T ss_pred             hc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhh
Confidence            76 333321    1122578888888887762211     1235677888888888877643

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.13  E-value=8.6e-08  Score=75.94  Aligned_cols=111  Identities=14%  Similarity=0.137  Sum_probs=61.6

Q ss_pred             CCCCcEEEeecccccccCCcccc-CCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEE
Q 048551          139 LFKLEKLSFCVIKLTGQLPASIQ-NLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIY  217 (409)
Q Consensus       139 l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~  217 (409)
                      ...|...++++|.+. .+|..|. ..+.++.+++++|+++ .+|..+..++.|+.|+++.|.+...+..+..+.++-.|+
T Consensus        52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD  129 (177)
T ss_pred             CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence            344555566666665 4444443 3345666666666665 555556666666666666666665554555566666666


Q ss_pred             eecCcCcccCchHHhhCCCccceeeccccccccccc
Q 048551          218 LHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLP  253 (409)
Q Consensus       218 l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p  253 (409)
                      ..+|.+. .+|..++ .-...-..++.++.+.+.-+
T Consensus       130 s~~na~~-eid~dl~-~s~~~al~~lgnepl~~~~~  163 (177)
T KOG4579|consen  130 SPENARA-EIDVDLF-YSSLPALIKLGNEPLGDETK  163 (177)
T ss_pred             CCCCccc-cCcHHHh-ccccHHHHHhcCCcccccCc
Confidence            6666665 6665544 22222333445555554433

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.12  E-value=1.7e-07  Score=83.74  Aligned_cols=176  Identities=20%  Similarity=0.217  Sum_probs=113.5

Q ss_pred             CCCcEEEccCCcCcccCc--ccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccc-cccc-cchhhhcCCCCC
Q 048551          188 RSLFYLNVGGNQFSGMFL--PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNN-FTGP-LPDSFSNASNRE  263 (409)
Q Consensus       188 ~~L~~L~l~~n~l~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~  263 (409)
                      +.|+++|+++..++...-  .+..+.+|+.|.+.++++.+.+...++ .-.+|+.|+++.+. ++.. ..-.+.+|+.|.
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iA-kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIA-KNSNLVRLNLSMCSGFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHh-ccccceeeccccccccchhHHHHHHHhhhhHh
Confidence            458888888887765433  466788888888889888877777777 67889999888763 3321 112357888899


Q ss_pred             EEEcccCcCccccchhhh---hcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCC-cccc
Q 048551          264 RLELSYNQFRGKSIWRSA---ATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSN-NLSG  339 (409)
Q Consensus       264 ~L~Ls~N~l~~~~~~~~~---l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N-~l~~  339 (409)
                      .|+++++.+.........   .+.+ ..|++++.+-.     ++.     .   .+..| ...+|+|..||||+| .++.
T Consensus       264 ~LNlsWc~l~~~~Vtv~V~hise~l-~~LNlsG~rrn-----l~~-----s---h~~tL-~~rcp~l~~LDLSD~v~l~~  328 (419)
T KOG2120|consen  264 ELNLSWCFLFTEKVTVAVAHISETL-TQLNLSGYRRN-----LQK-----S---HLSTL-VRRCPNLVHLDLSDSVMLKN  328 (419)
T ss_pred             hcCchHhhccchhhhHHHhhhchhh-hhhhhhhhHhh-----hhh-----h---HHHHH-HHhCCceeeeccccccccCc
Confidence            999988877654421111   1122 55555543211     000     0   00000 345788899999985 4565


Q ss_pred             ccchhhhcCCCCcEEEe-eccceecCCCC----CCCCCCCeecccCC
Q 048551          340 QLPRLLVNLSFLVLLNL-YNHFDGEVPTK----GVFNNKTRISLAGN  381 (409)
Q Consensus       340 ~~p~~~~~l~~L~~L~L-~n~l~~~~p~~----~~~~~L~~L~l~~N  381 (409)
                      .....|..++.|++|.+ .+..+  +|..    ...|+|.+|++.|.
T Consensus       329 ~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  329 DCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence            55667778888999988 55543  3432    66788888887765

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.09  E-value=5.9e-07  Score=80.29  Aligned_cols=84  Identities=21%  Similarity=0.224  Sum_probs=40.8

Q ss_pred             CCCCcEEeCCCCCCCC--CCCCCCCCCCCCcEEEccCCcCcccCccc-CCCCCCcEEEeecCcCcccCchHHhhCCCccc
Q 048551          163 LSSHLEADSNRNNFGG--KIPESPGQLRSLFYLNVGGNQFSGMFLPV-YNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLR  239 (409)
Q Consensus       163 l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~  239 (409)
                      .+.++.+|+.+|.|+.  .+...+.++|.|+.|+++.|.+...+..+ ....+|+.|-+.+..+.-.-...+...+|.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            3455666666666652  22223445566666666666665544322 34455555555555443222222222444445


Q ss_pred             eeecccc
Q 048551          240 KIVIALN  246 (409)
Q Consensus       240 ~L~L~~n  246 (409)
                      .|.++.|
T Consensus       150 elHmS~N  156 (418)
T KOG2982|consen  150 ELHMSDN  156 (418)
T ss_pred             hhhhccc
Confidence            5554444

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.96  E-value=4.2e-07  Score=72.09  Aligned_cols=103  Identities=20%  Similarity=0.278  Sum_probs=61.4

Q ss_pred             cEEEecCCCCccccCcc---ccCCCCCCEEEccCCcccccCCccc-cCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEE
Q 048551           71 RFINIADNGVQGEIPNE---LGNLVRLEKLILANNSFSGTIPTNL-SLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS  146 (409)
Q Consensus        71 ~~L~L~~n~l~~~~p~~---~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  146 (409)
                      ..++|+.|.+- .+++.   +....+|...+|++|.+. .+|..| ..++..+.+++++|++. .+|..+..++.|+.++
T Consensus        30 h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   30 HFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN  106 (177)
T ss_pred             hhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence            34555555554 33332   333445555666666666 344444 34456666667767666 5666666667777777


Q ss_pred             eecccccccCCccccCCCCCcEEeCCCCCCC
Q 048551          147 FCVIKLTGQLPASIQNLSSHLEADSNRNNFG  177 (409)
Q Consensus       147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~  177 (409)
                      ++.|.+. ..|+.+..+.++..|+..+|.+.
T Consensus       107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             cccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            7777666 55666666666666666666654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.93  E-value=1.1e-05  Score=51.59  Aligned_cols=38  Identities=37%  Similarity=0.478  Sum_probs=23.6

Q ss_pred             CccceeeccccccccccchhhhcCCCCCEEEcccCcCcc
Q 048551          236 PNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRG  274 (409)
Q Consensus       236 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  274 (409)
                      ++|++|++++|+++ .+|..++++++|+.|++++|++++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            35666777777776 455556677777777777776664

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.90  E-value=1.1e-05  Score=51.74  Aligned_cols=12  Identities=50%  Similarity=0.678  Sum_probs=3.8

Q ss_pred             CCEEEccCCccc
Q 048551           94 LEKLILANNSFS  105 (409)
Q Consensus        94 L~~L~L~~n~l~  105 (409)
                      |++|++++|+|+
T Consensus         3 L~~L~l~~N~i~   14 (44)
T PF12799_consen    3 LEELDLSNNQIT   14 (44)
T ss_dssp             -SEEEETSSS-S
T ss_pred             ceEEEccCCCCc
Confidence            333333333333

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.83  E-value=6.5e-05  Score=71.77  Aligned_cols=131  Identities=18%  Similarity=0.175  Sum_probs=67.4

Q ss_pred             cCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCC-cCCccCCcccCCCCCCcEE
Q 048551           67 CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRN-ILAGEIPAEIGNLFKLEKL  145 (409)
Q Consensus        67 c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~L  145 (409)
                      |.++++|++++|.++ .+|. +  -.+|++|.++++.--..+|..+  .++|++|++++| .+. .+|.      +|+.|
T Consensus        51 ~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L  117 (426)
T PRK15386         51 ARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSL  117 (426)
T ss_pred             hcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------ccceE
Confidence            457778888888777 5551 2  1357888887643322555444  246777777776 443 4443      35556


Q ss_pred             Eeeccccc--ccCCccccCCCCCcEEeCCCCC-CC-CCCCCCCCCC-CCCcEEEccCCcCcccCcccCCCCCCcEEEeec
Q 048551          146 SFCVIKLT--GQLPASIQNLSSHLEADSNRNN-FG-GKIPESPGQL-RSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHD  220 (409)
Q Consensus       146 ~L~~n~l~--~~~p~~l~~l~~L~~L~l~~n~-l~-~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~  220 (409)
                      ++..+...  +.+|.      +|+.|.+.+++ .. ..+|.   .+ ++|++|++++|.....++.+-  .+|+.|+++.
T Consensus       118 ~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~  186 (426)
T PRK15386        118 EIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHI  186 (426)
T ss_pred             EeCCCCCcccccCcc------hHhheecccccccccccccc---ccCCcccEEEecCCCcccCccccc--ccCcEEEecc
Confidence            66554432  12332      34455553322 10 01111   11 456777776666443222221  4666666665


Q ss_pred             C
Q 048551          221 N  221 (409)
Q Consensus       221 n  221 (409)
                      +
T Consensus       187 n  187 (426)
T PRK15386        187 E  187 (426)
T ss_pred             c
Confidence            4

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.83  E-value=3.8e-05  Score=65.19  Aligned_cols=59  Identities=19%  Similarity=0.180  Sum_probs=29.3

Q ss_pred             CCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeeccccc
Q 048551           93 RLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLT  153 (409)
Q Consensus        93 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  153 (409)
                      +...+||++|.+..  -..|..++.|..|.+++|+|+..-|.--.-+++|+.|.+.+|.+.
T Consensus        43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~  101 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ  101 (233)
T ss_pred             ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence            35555666665541  122445555555555555555333332233445555555555554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.80  E-value=4.1e-05  Score=65.04  Aligned_cols=107  Identities=22%  Similarity=0.275  Sum_probs=78.7

Q ss_pred             eeecCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCC--cccCCCCC
Q 048551           64 GVTCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIP--AEIGNLFK  141 (409)
Q Consensus        64 g~~c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p--~~~~~l~~  141 (409)
                      |++-+....+||++|.+. .++ .|..++.|..|.+.+|.|+...|.--.-+++|+.|.+.+|.+. .+.  .-+..+++
T Consensus        38 g~~~d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~  114 (233)
T KOG1644|consen   38 GATLDQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPK  114 (233)
T ss_pred             cccccccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCc
Confidence            444457788999999998 433 5788999999999999999776765567889999999999987 222  12667888


Q ss_pred             CcEEEeecccccccC---CccccCCCCCcEEeCCC
Q 048551          142 LEKLSFCVIKLTGQL---PASIQNLSSHLEADSNR  173 (409)
Q Consensus       142 L~~L~L~~n~l~~~~---p~~l~~l~~L~~L~l~~  173 (409)
                      |++|.+-+|.++..-   --.+..+++|+.||...
T Consensus       115 L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  115 LEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             cceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            999988888876321   11345566666666544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.72  E-value=1.2e-05  Score=82.86  Aligned_cols=183  Identities=19%  Similarity=0.202  Sum_probs=113.2

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCccccc-------------CCccc--cCCCCCcEEEcCCCcCCc-cC
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGT-------------IPTNL--SLRSKLMLFFANRNILAG-EI  132 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-------------~~~~~--~~l~~L~~L~l~~n~l~~-~~  132 (409)
                      +++.+++.+.......-....... |+.+.|.+-.....             +...+  ..-.+|++|++++...-. .-
T Consensus        61 ~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W  139 (699)
T KOG3665|consen   61 NLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGW  139 (699)
T ss_pred             eeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccH
Confidence            556666666655533333333333 67776665422211             00000  224678889988765431 12


Q ss_pred             CcccC-CCCCCcEEEeeccccccc-CCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc--ccC
Q 048551          133 PAEIG-NLFKLEKLSFCVIKLTGQ-LPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL--PVY  208 (409)
Q Consensus       133 p~~~~-~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~  208 (409)
                      |..++ .+|+|+.|.+++-.+... +-.-..++++|..||+++.+++..  ..++.+++|+.|.+.+-.+.....  .++
T Consensus       140 ~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF  217 (699)
T KOG3665|consen  140 PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLF  217 (699)
T ss_pred             HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHh
Confidence            22333 478999999888766422 223445788899999999888743  567788888888888877765433  778


Q ss_pred             CCCCCcEEEeecCcCcccCch------HHhhCCCccceeeccccccccccchh
Q 048551          209 NLSSLEMIYLHDNRLNGNLPP------VIGAKLPNLRKIVIALNNFTGPLPDS  255 (409)
Q Consensus       209 ~l~~L~~L~l~~n~l~~~~p~------~~~~~l~~L~~L~L~~n~l~~~~p~~  255 (409)
                      ++++|+.||+|..... ..+.      +-+..+|+|+.||.+++.+.+.+-+.
T Consensus       218 ~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~  269 (699)
T KOG3665|consen  218 NLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEE  269 (699)
T ss_pred             cccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchhHHHHHH
Confidence            8999999999876654 2221      11235788888888888777554443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.59  E-value=0.00051  Score=65.76  Aligned_cols=111  Identities=19%  Similarity=0.172  Sum_probs=70.2

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCC-cccccCCccccCCCCCcEEEcCCCcCC--ccCCcccCCCCCCcEE
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANN-SFSGTIPTNLSLRSKLMLFFANRNILA--GEIPAEIGNLFKLEKL  145 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~p~~~~~l~~L~~L  145 (409)
                      +|++|.++++.--..+|..+.  ++|++|++++| .+. .+|.      .|+.|++..+...  +.+|.      +|+.|
T Consensus        73 sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~~~~L~~LPs------sLk~L  137 (426)
T PRK15386         73 ELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSATDSIKNVPN------GLTSL  137 (426)
T ss_pred             CCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccceEEeCCCCCcccccCcc------hHhhe
Confidence            799999998543336776553  58999999998 555 4554      4777888766543  13443      46667


Q ss_pred             Eeeccccc--ccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCc
Q 048551          146 SFCVIKLT--GQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQ  199 (409)
Q Consensus       146 ~L~~n~l~--~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  199 (409)
                      .+.+++..  ...|..+.  ++|++|++++|... ..|..+.  .+|+.|.++.+.
T Consensus       138 ~I~~~n~~~~~~lp~~LP--sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        138 SINSYNPENQARIDNLIS--PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             eccccccccccccccccC--CcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence            76443211  01121111  57999999988865 3444333  588999988764

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.55  E-value=2.3e-05  Score=80.74  Aligned_cols=151  Identities=13%  Similarity=0.137  Sum_probs=92.6

Q ss_pred             CCCCEEEccCCccccc-CCccc-cCCCCCcEEEcCCCcCCc-cCCcccCCCCCCcEEEeecccccccCCccccCCCCCcE
Q 048551           92 VRLEKLILANNSFSGT-IPTNL-SLRSKLMLFFANRNILAG-EIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLE  168 (409)
Q Consensus        92 ~~L~~L~L~~n~l~~~-~~~~~-~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  168 (409)
                      .+|++|++++...-.. -|..+ .-+|.|+.|.+.+-.+.. .+-....++++|..||+++.+++..  .+++++++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            4677888877543211 11222 347788888877765542 2233345677888888888887732  56777888888


Q ss_pred             EeCCCCCCCC-CCCCCCCCCCCCcEEEccCCcCcccC-------cccCCCCCCcEEEeecCcCcccCchHHhhCCCccce
Q 048551          169 ADSNRNNFGG-KIPESPGQLRSLFYLNVGGNQFSGMF-------LPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRK  240 (409)
Q Consensus       169 L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~-------~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~  240 (409)
                      |.+.+=.+.. ..-..+-++++|+.||+|........       ..-..+++|+.||.+++.+.+.+-..+-...++|+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~  279 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ  279 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence            7777655542 11123456788888888776544322       122357888888888887776555554445566666


Q ss_pred             eecc
Q 048551          241 IVIA  244 (409)
Q Consensus       241 L~L~  244 (409)
                      +.+-
T Consensus       280 i~~~  283 (699)
T KOG3665|consen  280 IAAL  283 (699)
T ss_pred             hhhh
Confidence            5543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.37  E-value=0.00076  Score=54.28  Aligned_cols=58  Identities=21%  Similarity=0.162  Sum_probs=18.7

Q ss_pred             ccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551           88 LGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF  147 (409)
Q Consensus        88 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  147 (409)
                      |.++++|+.+.+.. .++......|.++++|+.+.+..+ +...-...|.++++++.+.+
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~   65 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITF   65 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEE
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccc
Confidence            44444445444442 233233333444444444444432 32122223444444444444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.35  E-value=0.00085  Score=53.96  Aligned_cols=83  Identities=13%  Similarity=-0.016  Sum_probs=28.7

Q ss_pred             cccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCC
Q 048551          111 NLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSL  190 (409)
Q Consensus       111 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  190 (409)
                      .|.++++|+.+.+.. .++..-...|..+++|+.+.+..+ +.......|.++++++.+.+.. .+.......|..+++|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            344455555555543 233222333444545555555443 3322223344444444444433 2221222334444444


Q ss_pred             cEEEcc
Q 048551          191 FYLNVG  196 (409)
Q Consensus       191 ~~L~l~  196 (409)
                      +.+.+.
T Consensus        84 ~~i~~~   89 (129)
T PF13306_consen   84 KNIDIP   89 (129)
T ss_dssp             CEEEET
T ss_pred             cccccC
Confidence            444443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.09  E-value=0.0002  Score=63.33  Aligned_cols=90  Identities=18%  Similarity=0.153  Sum_probs=51.8

Q ss_pred             cCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCC--cCCccCCcccCCCCCCcEEEeecccccccCCcc--
Q 048551           84 IPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRN--ILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPAS--  159 (409)
Q Consensus        84 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~--  159 (409)
                      +....-.+..|+.|++.+..++..  ..+-.+++|+.|.++.|  ++.+.++.....+++|+++++++|++..  ++.  
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~  110 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLR  110 (260)
T ss_pred             cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccc
Confidence            444444555666666666666522  23445667777777777  5555555445555777777777777652  222  


Q ss_pred             -ccCCCCCcEEeCCCCCCC
Q 048551          160 -IQNLSSHLEADSNRNNFG  177 (409)
Q Consensus       160 -l~~l~~L~~L~l~~n~l~  177 (409)
                       +..+.+|..|++.+|..+
T Consensus       111 pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  111 PLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             hhhhhcchhhhhcccCCcc
Confidence             334455556666665554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.95  E-value=0.00056  Score=60.56  Aligned_cols=84  Identities=21%  Similarity=0.295  Sum_probs=43.4

Q ss_pred             CCCCcEEEeecccccccCCccccCCCCCcEEeCCCC--CCCCCCCCCCCCCCCCcEEEccCCcCcccC--cccCCCCCCc
Q 048551          139 LFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRN--NFGGKIPESPGQLRSLFYLNVGGNQFSGMF--LPVYNLSSLE  214 (409)
Q Consensus       139 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~l~~L~  214 (409)
                      +..|+.+++.+..++.  -..+..+++|++|.++.|  .+.+.++.....+++|+++++++|.+..+.  ..+..+.+|.
T Consensus        42 ~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   42 FVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             ccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            3344444444444441  123445556666666666  444444433444566666666666655321  1445555666


Q ss_pred             EEEeecCcCc
Q 048551          215 MIYLHDNRLN  224 (409)
Q Consensus       215 ~L~l~~n~l~  224 (409)
                      .|++.+|..+
T Consensus       120 ~Ldl~n~~~~  129 (260)
T KOG2739|consen  120 SLDLFNCSVT  129 (260)
T ss_pred             hhhcccCCcc
Confidence            6666666554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.78  E-value=3.3e-05  Score=68.69  Aligned_cols=82  Identities=21%  Similarity=0.233  Sum_probs=46.8

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCc--ccCCCCCCcEEE
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPA--EIGNLFKLEKLS  146 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~  146 (409)
                      +++.|++-++++++. . ...+|+.|++|.|+-|+|+..-|  +..+++|++|+|..|.|.+ +.+  .+.++++|+.|-
T Consensus        20 ~vkKLNcwg~~L~DI-s-ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI-S-ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HhhhhcccCCCccHH-H-HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHh
Confidence            456666666666632 1 24456667777777777764333  5566666666666666652 221  244556666666


Q ss_pred             eeccccccc
Q 048551          147 FCVIKLTGQ  155 (409)
Q Consensus       147 L~~n~l~~~  155 (409)
                      |..|.-.+.
T Consensus        95 L~ENPCc~~  103 (388)
T KOG2123|consen   95 LDENPCCGE  103 (388)
T ss_pred             hccCCcccc
Confidence            655554443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.59  E-value=8.6e-05  Score=66.12  Aligned_cols=100  Identities=17%  Similarity=0.115  Sum_probs=71.5

Q ss_pred             CCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCC--ccccCCCCCc
Q 048551           90 NLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLP--ASIQNLSSHL  167 (409)
Q Consensus        90 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~  167 (409)
                      .+.+.+.|++.++.++++  .....++.|++|.|+-|+|+...|  +..++.|++|+|..|.|.. +.  ..+.++++|+
T Consensus        17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr   91 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIES-LDELEYLKNLPSLR   91 (388)
T ss_pred             HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhccccc-HHHHHHHhcCchhh
Confidence            355677888888888743  224578888888888888885444  7778888888888888863 22  3467888888


Q ss_pred             EEeCCCCCCCCCCCCC-----CCCCCCCcEEE
Q 048551          168 EADSNRNNFGGKIPES-----PGQLRSLFYLN  194 (409)
Q Consensus       168 ~L~l~~n~l~~~~~~~-----~~~l~~L~~L~  194 (409)
                      .|+|..|.-.|.-+..     +.-+++|+.||
T Consensus        92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            8888888876655432     34567777775

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.73  E-value=0.0042  Score=33.08  Aligned_cols=21  Identities=48%  Similarity=0.732  Sum_probs=16.7

Q ss_pred             CCCEEECcCCccccccchhhhc
Q 048551          326 SIEELDLSSNNLSGQLPRLLVN  347 (409)
Q Consensus       326 ~L~~L~Ls~N~l~~~~p~~~~~  347 (409)
                      +|++||+++|+|+ .+|..|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            4789999999999 77776654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=95.63  E-value=0.00035  Score=65.69  Aligned_cols=56  Identities=18%  Similarity=0.033  Sum_probs=32.6

Q ss_pred             CCCCCCEEECcCCccc-cccchhhhcCCCCcEEEe-eccceecCCC---CCCCCCCCeecc
Q 048551          323 SLKSIEELDLSSNNLS-GQLPRLLVNLSFLVLLNL-YNHFDGEVPT---KGVFNNKTRISL  378 (409)
Q Consensus       323 ~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L-~n~l~~~~p~---~~~~~~L~~L~l  378 (409)
                      ++..|+.+.|++...+ +..-..+...++|+.+++ ...-...-+.   ..++|+++...+
T Consensus       399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~  459 (483)
T KOG4341|consen  399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY  459 (483)
T ss_pred             cccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence            3466777777776543 333445667778888888 5554332222   156666665544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.17  E-value=0.0084  Score=31.88  Aligned_cols=11  Identities=36%  Similarity=0.468  Sum_probs=4.2

Q ss_pred             CEEEccCCccc
Q 048551           95 EKLILANNSFS  105 (409)
Q Consensus        95 ~~L~L~~n~l~  105 (409)
                      ++|+|++|+++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            33333333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=94.70  E-value=0.001  Score=62.64  Aligned_cols=64  Identities=19%  Similarity=0.150  Sum_probs=40.5

Q ss_pred             CCCCCCCEEECcCCcccccc-----chhhhcCCCCcEEEe-eccceecCCCC--CCCCCCCeecccCCCCce
Q 048551          322 DSLKSIEELDLSSNNLSGQL-----PRLLVNLSFLVLLNL-YNHFDGEVPTK--GVFNNKTRISLAGNGKLC  385 (409)
Q Consensus       322 ~~l~~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~L-~n~l~~~~p~~--~~~~~L~~L~l~~Np~l~  385 (409)
                      .+++.|+.+.++++......     ...-..+..|..+.| +...+..-.-.  ...++|+.+++.+.-.++
T Consensus       369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt  440 (483)
T KOG4341|consen  369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT  440 (483)
T ss_pred             cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence            35788888899877543111     122345677888888 55554332221  567888888888876665

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.15  E-value=0.011  Score=58.79  Aligned_cols=16  Identities=19%  Similarity=0.302  Sum_probs=8.4

Q ss_pred             CCCCCeecccCCCCce
Q 048551          370 FNNKTRISLAGNGKLC  385 (409)
Q Consensus       370 ~~~L~~L~l~~Np~l~  385 (409)
                      ..++..+++.+.+.+.
T Consensus       426 ~~~~~~l~~~~~~~~~  441 (482)
T KOG1947|consen  426 CSNLKDLDLSGCRVIT  441 (482)
T ss_pred             hhccccCCccCccccc
Confidence            4445556666554443

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.97  E-value=0.00041  Score=68.60  Aligned_cols=181  Identities=23%  Similarity=0.186  Sum_probs=88.2

Q ss_pred             CCEEEccCCcccccCC----ccccCCCCCcEEEcCCCcCCccCCc----ccCCC-CCCcEEEeeccccccc----CCccc
Q 048551           94 LEKLILANNSFSGTIP----TNLSLRSKLMLFFANRNILAGEIPA----EIGNL-FKLEKLSFCVIKLTGQ----LPASI  160 (409)
Q Consensus        94 L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~p~----~~~~l-~~L~~L~L~~n~l~~~----~p~~l  160 (409)
                      +.++.|.+|.+.....    ..+...+.|+.|+++.|.+.+.--.    .+... ..+++|++..|.+++.    +.+.+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            4555555555543211    2233445555555555555422111    11111 3444555555555432    22334


Q ss_pred             cCCCCCcEEeCCCCCCCC----CCCC----CCCCCCCCcEEEccCCcCcccCc-----ccCCCCC-CcEEEeecCcCccc
Q 048551          161 QNLSSHLEADSNRNNFGG----KIPE----SPGQLRSLFYLNVGGNQFSGMFL-----PVYNLSS-LEMIYLHDNRLNGN  226 (409)
Q Consensus       161 ~~l~~L~~L~l~~n~l~~----~~~~----~~~~l~~L~~L~l~~n~l~~~~~-----~~~~l~~-L~~L~l~~n~l~~~  226 (409)
                      .....++.++++.|.+..    .++.    .+....++++|+++++.++...-     .+...+. +..+++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            445555666666655531    0111    12235566667776666553211     2233333 55577777766532


Q ss_pred             ----CchHHhhCC-Cccceeeccccccccccc----hhhhcCCCCCEEEcccCcCccc
Q 048551          227 ----LPPVIGAKL-PNLRKIVIALNNFTGPLP----DSFSNASNRERLELSYNQFRGK  275 (409)
Q Consensus       227 ----~p~~~~~~l-~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~  275 (409)
                          +.+.+. .+ ..++.++++.|.+++...    ..+..++.++.+.+++|.+.+.
T Consensus       249 g~~~L~~~l~-~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~  305 (478)
T KOG4308|consen  249 GVEKLLPCLS-VLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY  305 (478)
T ss_pred             HHHHHHHHhc-ccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence                122222 23 456777777777764333    3345566777777777777654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=93.64  E-value=0.0059  Score=60.86  Aligned_cols=110  Identities=14%  Similarity=0.018  Sum_probs=47.7

Q ss_pred             CCCCCEEEccCCc-cccc-CCccccCCCCCcEEEcCCC-cCCccCC----cccCCCCCCcEEEeeccc-ccccCCccccC
Q 048551           91 LVRLEKLILANNS-FSGT-IPTNLSLRSKLMLFFANRN-ILAGEIP----AEIGNLFKLEKLSFCVIK-LTGQLPASIQN  162 (409)
Q Consensus        91 l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~p----~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~  162 (409)
                      .+.|+.+.+..+. ++.. .-......+.|+.|+++++ ......+    .....+.+|+.|+++++. ++...-..+..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            4555555555552 2211 1122345566666666542 1110111    112234556666666555 33222222222


Q ss_pred             -CCCCcEEeCCCCC-CCCCCC-CCCCCCCCCcEEEccCCcC
Q 048551          163 -LSSHLEADSNRNN-FGGKIP-ESPGQLRSLFYLNVGGNQF  200 (409)
Q Consensus       163 -l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~l  200 (409)
                       +++|++|.+.++. +++..- .....+++|++|+++++..
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence             4566666655444 332111 1122445566666665543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.61  E-value=0.043  Score=27.09  Aligned_cols=14  Identities=43%  Similarity=0.686  Sum_probs=8.8

Q ss_pred             CCCCEEECcCCccc
Q 048551          325 KSIEELDLSSNNLS  338 (409)
Q Consensus       325 ~~L~~L~Ls~N~l~  338 (409)
                      ++|+.|++++|+++
T Consensus         1 ~~L~~L~l~~n~L~   14 (17)
T PF13504_consen    1 PNLRTLDLSNNRLT   14 (17)
T ss_dssp             TT-SEEEETSS--S
T ss_pred             CccCEEECCCCCCC
Confidence            46788888888887

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.64  E-value=0.078  Score=28.68  Aligned_cols=22  Identities=32%  Similarity=0.433  Sum_probs=14.8

Q ss_pred             CCCCCEEECcCCccccccchhh
Q 048551          324 LKSIEELDLSSNNLSGQLPRLL  345 (409)
Q Consensus       324 l~~L~~L~Ls~N~l~~~~p~~~  345 (409)
                      +++|+.|+|++|+|++.....+
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHh
Confidence            3678999999999987655544

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.50  E-value=0.0069  Score=52.93  Aligned_cols=89  Identities=16%  Similarity=0.164  Sum_probs=71.4

Q ss_pred             CCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCC
Q 048551          183 SPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNR  262 (409)
Q Consensus       183 ~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  262 (409)
                      .+......+.||++.|++......+..++.+..++++.|.+. ..|..+. .+..++.+++..|..+ ..|.+++..+++
T Consensus        37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~-q~~e~~~~~~~~n~~~-~~p~s~~k~~~~  113 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDAK-QQRETVNAASHKNNHS-QQPKSQKKEPHP  113 (326)
T ss_pred             hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhHH-HHHHHHHHHhhccchh-hCCccccccCCc
Confidence            445566778888888888766556777788888999998887 8888887 6788888888888777 678888999999


Q ss_pred             CEEEcccCcCcc
Q 048551          263 ERLELSYNQFRG  274 (409)
Q Consensus       263 ~~L~Ls~N~l~~  274 (409)
                      +.+++.+|.+..
T Consensus       114 k~~e~k~~~~~~  125 (326)
T KOG0473|consen  114 KKNEQKKTEFFR  125 (326)
T ss_pred             chhhhccCcchH
Confidence            999988887654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.56  E-value=0.25  Score=27.21  Aligned_cols=20  Identities=55%  Similarity=0.738  Sum_probs=15.3

Q ss_pred             CCCCCEEECcCCccccccchh
Q 048551          324 LKSIEELDLSSNNLSGQLPRL  344 (409)
Q Consensus       324 l~~L~~L~Ls~N~l~~~~p~~  344 (409)
                      +++|++|+|++|+|+. +|..
T Consensus         1 L~~L~~L~L~~N~l~~-lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLSS-LPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCc-CCHH
Confidence            3678999999999984 4543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.56  E-value=0.25  Score=27.21  Aligned_cols=20  Identities=55%  Similarity=0.738  Sum_probs=15.3

Q ss_pred             CCCCCEEECcCCccccccchh
Q 048551          324 LKSIEELDLSSNNLSGQLPRL  344 (409)
Q Consensus       324 l~~L~~L~Ls~N~l~~~~p~~  344 (409)
                      +++|++|+|++|+|+. +|..
T Consensus         1 L~~L~~L~L~~N~l~~-lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLSS-LPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCc-CCHH
Confidence            3678999999999984 4543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.09  E-value=0.0069  Score=52.92  Aligned_cols=88  Identities=16%  Similarity=0.209  Sum_probs=51.2

Q ss_pred             cccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCC
Q 048551           87 ELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSH  166 (409)
Q Consensus        87 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  166 (409)
                      .+..+...+.||++.|++. ..-..|+-++.|..|+++.|.+. ..|..++.+..++.+++..|..+ ..|.+++..+.+
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~  113 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP  113 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence            4455566666666666654 33344555556666666666665 55666665555666665555555 556666666666


Q ss_pred             cEEeCCCCCCC
Q 048551          167 LEADSNRNNFG  177 (409)
Q Consensus       167 ~~L~l~~n~l~  177 (409)
                      ++++.-+|.+.
T Consensus       114 k~~e~k~~~~~  124 (326)
T KOG0473|consen  114 KKNEQKKTEFF  124 (326)
T ss_pred             chhhhccCcch
Confidence            66655555543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.36  E-value=0.32  Score=26.77  Aligned_cols=20  Identities=35%  Similarity=0.599  Sum_probs=10.2

Q ss_pred             CCCcEEEeecCcCcccCchHH
Q 048551          211 SSLEMIYLHDNRLNGNLPPVI  231 (409)
Q Consensus       211 ~~L~~L~l~~n~l~~~~p~~~  231 (409)
                      ++|+.|++++|+++ .+|...
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~   21 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHH
Confidence            34555555555555 445443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.36  E-value=0.32  Score=26.77  Aligned_cols=20  Identities=35%  Similarity=0.599  Sum_probs=10.2

Q ss_pred             CCCcEEEeecCcCcccCchHH
Q 048551          211 SSLEMIYLHDNRLNGNLPPVI  231 (409)
Q Consensus       211 ~~L~~L~l~~n~l~~~~p~~~  231 (409)
                      ++|+.|++++|+++ .+|...
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~   21 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHH
Confidence            34555555555555 445443

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=87.92  E-value=0.015  Score=57.66  Aligned_cols=108  Identities=22%  Similarity=0.232  Sum_probs=59.9

Q ss_pred             CCcEEeCCCCCCCCCCC----CCCCCCCCCcEEEccCCcCcccCc-----ccCCC-CCCcEEEeecCcCccc----CchH
Q 048551          165 SHLEADSNRNNFGGKIP----ESPGQLRSLFYLNVGGNQFSGMFL-----PVYNL-SSLEMIYLHDNRLNGN----LPPV  230 (409)
Q Consensus       165 ~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~l-~~L~~L~l~~n~l~~~----~p~~  230 (409)
                      .+..+.+.+|.+.....    ..+...+.|+.|++++|.+.....     .+... ..++.|++..|.+++.    +...
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            36777788887764322    334556777778888887763221     12222 4556666666666532    3344


Q ss_pred             HhhCCCccceeecccccccc----ccchhhh----cCCCCCEEEcccCcCc
Q 048551          231 IGAKLPNLRKIVIALNNFTG----PLPDSFS----NASNRERLELSYNQFR  273 (409)
Q Consensus       231 ~~~~l~~L~~L~L~~n~l~~----~~p~~l~----~l~~L~~L~Ls~N~l~  273 (409)
                      +. ....++.++++.|.+..    .++..+.    ...++++|.+.++.++
T Consensus       168 L~-~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t  217 (478)
T KOG4308|consen  168 LE-KNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT  217 (478)
T ss_pred             Hh-cccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence            44 35667777777776531    1222222    2445666666666555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	409
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-14
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-14
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-12

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 127/308 (41%), Gaps = 28/308 (9%)
Query: 66  TCASLRFINIADNGVQ--GEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRS---KLML 120
           +C+ L+F+N++ N +   G++   L  L  LE L L+ NS SG       L     +L  
Sbjct: 121 SCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKH 179
Query: 121 FFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKI 180
              + N ++G++  ++     LE L       +  +P  + + S+    D + N   G  
Sbjct: 180 LAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF 236
Query: 181 PESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRK 240
             +      L  LN+  NQF G  +P   L SL+ + L +N+  G +P  +      L  
Sbjct: 237 SRAISTCTELKLLNISSNQFVGP-IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTG 295
Query: 241 IVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQ 300
           + ++ N+F G +P  F + S  E L LS N F G+    +       ++ D   N    +
Sbjct: 296 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 355
Query: 301 QNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQXXXXXXXXXXXXXXXXY--- 357
                LP  ++NL            S+  LDLSSNN SG                 Y   
Sbjct: 356 -----LPESLTNLS----------ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 400
Query: 358 NHFDGEVP 365
           N F G++P
Sbjct: 401 NGFTGKIP 408

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 127/308 (41%), Gaps = 28/308 (9%)
Query: 66  TCASLRFINIADNGVQ--GEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRS---KLML 120
           +C+ L+F+N++ N +   G++   L  L  LE L L+ NS SG       L     +L  
Sbjct: 124 SCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKH 182
Query: 121 FFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKI 180
              + N ++G++  ++     LE L       +  +P  + + S+    D + N   G  
Sbjct: 183 LAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF 239
Query: 181 PESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRK 240
             +      L  LN+  NQF G  +P   L SL+ + L +N+  G +P  +      L  
Sbjct: 240 SRAISTCTELKLLNISSNQFVGP-IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTG 298
Query: 241 IVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQ 300
           + ++ N+F G +P  F + S  E L LS N F G+    +       ++ D   N    +
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358
Query: 301 QNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQXXXXXXXXXXXXXXXXY--- 357
                LP  ++NL            S+  LDLSSNN SG                 Y   
Sbjct: 359 -----LPESLTNLS----------ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403
Query: 358 NHFDGEVP 365
           N F G++P
Sbjct: 404 NGFTGKIP 411

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 107/233 (45%), Gaps = 14/233 (6%)
Query: 28  ANETDRLALLAIKSQLHDPLEVTSSLTNSVNLC--EWTGVTC----ASLRFINIADNGVQ 81
            N  D+ ALL IK  L +P  ++S L  + + C   W GV C     + R  N+  +G+ 
Sbjct: 3   CNPQDKQALLQIKKDLGNPTTLSSWLP-TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61
Query: 82  ----GEIPNELGNLVRLEKLILAN-NSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEI 136
                 IP+ L NL  L  L +   N+  G IP  ++  ++L   +     ++G IP  +
Sbjct: 62  LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121
Query: 137 GNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFY-LNV 195
             +  L  L F    L+G LP SI +L + +    + N   G IP+S G    LF  + +
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181
Query: 196 GGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNF 248
             N+ +G   P +   +L  + L  N L G+   + G+   N +KI +A N+ 
Sbjct: 182 SRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSD-KNTQKIHLAKNSL 233

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	409
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-65
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-50
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-49
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-47
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-46
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-42
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-32
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-30
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-26
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  210 bits (537), Expect = 2e-65
 Identities = 88/383 (22%), Positives = 142/383 (37%), Gaps = 89/383 (23%)

Query: 29  NETDRLALLAIKSQLHDPLEVTSSLTNSVNLCE--WTGVTCAS------LRFINIADNGV 80
           N  D+ ALL IK  L +P    SS   + + C   W GV C +      +  ++++   +
Sbjct: 4   NPQDKQALLQIKKDLGNP-TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62

Query: 81  QGE--IPNELGNLVRLEKLILAN-NSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIG 137
                IP+ L NL  L  L +   N+  G IP  ++  ++L   +     ++G IP  + 
Sbjct: 63  PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122

Query: 138 NLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGG 197
            +  L  L                + S         N   G +P S   L +L  +   G
Sbjct: 123 QIKTLVTL----------------DFSY--------NALSGTLPPSISSLPNLVGITFDG 158

Query: 198 NQFSGMFLP--VYNLSSL-EMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPD 254
           N+ SG  +P    + S L   + +  NRL G +PP     L NL  + ++ N   G    
Sbjct: 159 NRISGA-IPDSYGSFSKLFTSMTISRNRLTGKIPPTFA-NL-NLAFVDLSRNMLEGDASV 215

Query: 255 SFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLV 314
            F +  N +++ L+ N                                       +  + 
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFD----------------------------------LGKVG 241

Query: 315 NLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTKGVFNNK 373
                     K++  LDL +N + G LP+ L  L FL  LN+ +N+  GE+P  G     
Sbjct: 242 LS--------KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRF 293

Query: 374 TRISLAGNGKLCGGFDGLHSPSC 396
              + A N  LCG       P+C
Sbjct: 294 DVSAYANNKCLCGS----PLPAC 312

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  180 bits (459), Expect = 2e-50
 Identities = 83/369 (22%), Positives = 147/369 (39%), Gaps = 37/369 (10%)

Query: 27  NANETDRLALLAIKSQLHDPLEVTSSLTNSVNLCEWTGVTC-----ASLRFINIADNGVQ 81
            +   +   L++ K  L D   +    +++ N C + GVTC      S+   +   N   
Sbjct: 8   QSLYREIHQLISFKDVLPDK-NLLPDWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGF 66

Query: 82  GEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPA--EIGNL 139
             + + L +L  LE L L+N+  +G++       + L     +RN L+G +     +G+ 
Sbjct: 67  SAVSSSLLSLTGLESLFLSNSHINGSVSGFKCS-ASLTSLDLSRNSLSGPVTTLTSLGSC 125

Query: 140 FKLEKLSFCVIKLTGQLPASIQNLSSHLEA-DSNRNNFGGKIPES---PGQLRSLFYLNV 195
             L+ L+     L      S     + LE  D + N+  G              L +L +
Sbjct: 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI 185

Query: 196 GGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDS 255
            GN+ SG  + V    +LE + +  N  +  + P +G     L+ + I+ N  +G    +
Sbjct: 186 SGNKISG-DVDVSRCVNLEFLDVSSNNFSTGI-PFLG-DCSALQHLDISGNKLSGDFSRA 242

Query: 256 FSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVN 315
            S  +  + L +S NQF G  I      S  Q L+  +    G       +P  +S    
Sbjct: 243 ISTCTELKLLNISSNQFVG-PIPPLPLKSL-QYLSLAENKFTGE------IPDFLSG--- 291

Query: 316 LDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLY-NHFDGEVPTKGVFNNK- 373
                  +  ++  LDLS N+  G +P    + S L  L L  N+F GE+P   +   + 
Sbjct: 292 -------ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 344

Query: 374 -TRISLAGN 381
              + L+ N
Sbjct: 345 LKVLDLSFN 353

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  177 bits (452), Expect = 2e-49
 Identities = 72/325 (22%), Positives = 119/325 (36%), Gaps = 50/325 (15%)

Query: 67  CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRN 126
             +L  + +  N + GEIP+ L N   L  + L+NN  +G IP  +     L +   + N
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524

Query: 127 ILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQ 186
             +G IPAE+G+   L  L        G +PA++   S  +      N   GK       
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI----AANFIAGKRYVYIKN 580

Query: 187 LRSLFYLNVGGN--QFSGMFLP-VYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVI 243
                  +  GN  +F G+    +  LS+     +      G+  P       ++  + +
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD-NNGSMMFLDM 639

Query: 244 ALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNI 303
           + N  +G +P    +      L L +N   G SI                          
Sbjct: 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISG-SI-------------------------- 672

Query: 304 CYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDG 362
              P  + +L           + +  LDLSSN L G++P+ +  L+ L  ++L  N+  G
Sbjct: 673 ---PDEVGDL-----------RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718

Query: 363 EVPTKGVFNNKTRISLAGNGKLCGG 387
            +P  G F          N  LCG 
Sbjct: 719 PIPEMGQFETFPPAKFLNNPGLCGY 743

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  171 bits (435), Expect = 4e-47
 Identities = 90/321 (28%), Positives = 143/321 (44%), Gaps = 30/321 (9%)

Query: 52  SLTNSVNLCEWTGVTCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTN 111
           S++ +  +       C  L+ + I+ N + G++   +   V LE L +++N+FS  IP  
Sbjct: 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF- 218

Query: 112 LSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADS 171
           L   S L     + N L+G+    I    +L+ L+    +  G +P     L S      
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSL 276

Query: 172 NRNNFGGKIPES-PGQLRSLFYLNVGGNQFSGMFLP-VYNLSSLEMIYLHDNRLNGNLPP 229
             N F G+IP+   G   +L  L++ GN F G   P   + S LE + L  N  +G LP 
Sbjct: 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336

Query: 230 VIGAKLPNLRKIVIALNNFTGPLPDSFSNASNR-ERLELSYNQFRGK---SIWRSAATSY 285
               K+  L+ + ++ N F+G LP+S +N S     L+LS N F G    ++ ++   + 
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396

Query: 286 SQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLL 345
            Q L   +    G+      +P  +SN   L             L LS N LSG +P  L
Sbjct: 397 -QELYLQNNGFTGK------IPPTLSNCSEL-----------VSLHLSFNYLSGTIPSSL 438

Query: 346 VNLSFLVLLNL-YNHFDGEVP 365
            +LS L  L L  N  +GE+P
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIP 459

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  169 bits (431), Expect = 1e-46
 Identities = 78/323 (24%), Positives = 142/323 (43%), Gaps = 28/323 (8%)

Query: 61  EWTGVTCASLRFINIADNGVQGEIPNELGN--LVRLEKLILANNSFSGTIPTNLSLRSKL 118
           E      ASL  ++++ N   G I   L       L++L L NN F+G IP  LS  S+L
Sbjct: 361 ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 420

Query: 119 MLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEA-DSNRNNFG 177
           +    + N L+G IP+ +G+L KL  L   +  L G++P  +  + + LE    + N+  
Sbjct: 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT-LETLILDFNDLT 479

Query: 178 GKIPESPGQLRSLFYLNVGGNQFSGMFLP-VYNLSSLEMIYLHDNRLNGNLPPVIGAKLP 236
           G+IP       +L ++++  N+ +G     +  L +L ++ L +N  +GN+P  +G    
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG-DCR 538

Query: 237 NLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNH 296
           +L  + +  N F G +P +    S     +++ N   GK           +  +      
Sbjct: 539 SLIWLDLNTNLFNGTIPAAMFKQS----GKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594

Query: 297 HGRQQNICYLPTGISNLVNLDSL-------------ATDSLKSIEELDLSSNNLSGQLPR 343
             +          ++ L   +                 D+  S+  LD+S N LSG +P+
Sbjct: 595 EFQGI----RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650

Query: 344 LLVNLSFLVLLNL-YNHFDGEVP 365
            + ++ +L +LNL +N   G +P
Sbjct: 651 EIGSMPYLFILNLGHNDISGSIP 673

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  158 bits (402), Expect = 1e-42
 Identities = 80/324 (24%), Positives = 130/324 (40%), Gaps = 53/324 (16%)

Query: 67  CASLRFINIADNGVQGEIPNELG-NLVRLEKLILANNSFSGTIPTNLSLR---SKLMLFF 122
           C+ L+F+N++ N +        G  L  LE L L+ NS SG       L     +L    
Sbjct: 125 CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA 184

Query: 123 ANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPE 182
            + N ++G++   +     LE L       +  +P  + + S+    D + N   G    
Sbjct: 185 ISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSR 241

Query: 183 SPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIV 242
           +      L  LN+  NQF G  +P   L SL+ + L +N+  G +P  +      L  + 
Sbjct: 242 AISTCTELKLLNISSNQFVG-PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300

Query: 243 IALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQN 302
           ++ N+F G +P  F + S  E L LS N F G+                           
Sbjct: 301 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE--------------------------- 333

Query: 303 ICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSF-LVLLNL-YNHF 360
                      + +D+L    ++ ++ LDLS N  SG+LP  L NLS  L+ L+L  N+F
Sbjct: 334 -----------LPMDTLL--KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380

Query: 361 DGEVPT---KGVFNNKTRISLAGN 381
            G +     +   N    + L  N
Sbjct: 381 SGPILPNLCQNPKNTLQELYLQNN 404

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 65.7 bits (161), Expect = 9e-12
 Identities = 28/96 (29%), Positives = 47/96 (48%)

Query: 66  TCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANR 125
              S+ F++++ N + G IP E+G++  L  L L +N  SG+IP  +     L +   + 
Sbjct: 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689

Query: 126 NILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQ 161
           N L G IP  +  L  L ++      L+G +P   Q
Sbjct: 690 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQ 725

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  127 bits (321), Expect = 4e-32
 Identities = 50/357 (14%), Positives = 99/357 (27%), Gaps = 61/357 (17%)

Query: 32  DRLALLAIKSQLHDP--------LEVTSSLTNSVNLCEWT---GVTCAS---LRFINIAD 77
           D LAL  I   L+           +  ++   +  L  W    GV+  S   +  +++  
Sbjct: 31  DYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEG 90

Query: 78  NGVQGEIPNELGNLVRLEKLILANNSFSG----TIPTNLSLRSKLMLFFANRNILAGEIP 133
            G  G +P+ +G L  LE L L ++          P  +S           R        
Sbjct: 91  FGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFV 150

Query: 134 AEIG--NLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLF 191
                 +   L K           +  S +      +     NN    + ++  +L  L 
Sbjct: 151 DYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLR 209

Query: 192 YLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGP 251
              +G + F    +      + E       +            L +L  + +        
Sbjct: 210 QFYMGNSPFVAENIC----EAWENENSEYAQQYKTEDLKWD-NLKDLTDVEVYNCPNLTK 264

Query: 252 LPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGIS 311
           LP         + + ++ N+                                        
Sbjct: 265 LPTFLKALPEMQLINVACNRGIS-------------------------------GEQLKD 293

Query: 312 NLVNLDSLATDSLKSIEELDLSSNNL-SGQLPRLLVNLSFLVLLNL-YNHFDGEVPT 366
           +   L        + I+ + +  NNL +  +   L  +  L +L   YN  +G++P 
Sbjct: 294 DWQALADA--PVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA 348

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  120 bits (303), Expect = 7e-30
 Identities = 47/339 (13%), Positives = 91/339 (26%), Gaps = 65/339 (19%)

Query: 67  CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSF--------SGTIPTNLSLRSKL 118
              L  + + +     ++P  L  L  ++ + +A N                +  +  K+
Sbjct: 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKI 307

Query: 119 MLFFANRN-ILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFG 177
            + +   N +    +   +  + KL  L     +L G    +  +       +   N   
Sbjct: 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQIT 366

Query: 178 GKIPESPGQLRSLFYLNVGGNQFSGM--FLPVYNLSSLEMIYLHDNRLNG-------NLP 228
                  G    +  L+   N+   +       ++S +  I    N +          L 
Sbjct: 367 EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426

Query: 229 PVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQR 288
           P    K  N+  I ++ N  +    + FS  S    + L  N                  
Sbjct: 427 PTPF-KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN---------- 475

Query: 289 LNDDDQNHHGRQQNICYLPTGISNLVNL--------------DSLATDSLKSIEELDLSS 334
                        ++        N   L              D     +L  +  +DLS 
Sbjct: 476 -------------SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSY 522

Query: 335 NNLSGQLPRLLVNLSFLVLLNL-------YNHFDGEVPT 366
           N+ S   P   +N S L    +        N    E P 
Sbjct: 523 NSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  103 bits (258), Expect = 5e-24
 Identities = 42/330 (12%), Positives = 81/330 (24%), Gaps = 72/330 (21%)

Query: 69  SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNIL 128
            L    I  +  Q  I       ++  ++   +N+ +  +   +   +KL  F+   +  
Sbjct: 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPF 218

Query: 129 AGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLR 188
             E   E       E                  NL    + +        K+P     L 
Sbjct: 219 VAENICEAWENENSEYAQ-----QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273

Query: 189 SLFYLNVGGNQFSGM---------FLPVYNLSSLEMIYLHDNRL-NGNLPPVIGAKLPNL 238
            +  +NV  N+                      +++IY+  N L    +   +  K+  L
Sbjct: 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ-KMKKL 332

Query: 239 RKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHG 298
             +    N   G    +F +      L L+YNQ                           
Sbjct: 333 GMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITE------------------------ 367

Query: 299 RQQNICYLPTGI-SNLVNL--------------DSLATDSLKSIEELDLSSNNLSG---- 339
                  +P         +              +     S+  +  +D S N +      
Sbjct: 368 -------IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420

Query: 340 ---QLPRLLVNLSFLVLLNL-YNHFDGEVP 365
               L         +  +NL  N       
Sbjct: 421 NFDPLDPTPFKGINVSSINLSNNQISKFPK 450

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 98.2 bits (245), Expect = 3e-22
 Identities = 47/309 (15%), Positives = 100/309 (32%), Gaps = 38/309 (12%)

Query: 71  RFINIADNGVQGEIPNELGNLVRLEKLILANNSF-SGTIPTNLSLRSKLMLFFANRNILA 129
           R I+        +   +     +++ + +  N+  +  + T+L    KL +     N L 
Sbjct: 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343

Query: 130 GEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEA-DSNRNNFGGKIPESP--GQ 186
           G++P   G+  KL  L+    ++T  +PA+    +  +E      N     IP       
Sbjct: 344 GKLP-AFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKS 400

Query: 187 LRSLFYLNVGGNQFSGMFLP--------VYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNL 238
           +  +  ++   N+   +            +   ++  I L +N+++   P  + +    L
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPL 459

Query: 239 RKIVIALNNFTG-------PLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLND 291
             I +  N  T           ++F N      ++L +N+     +      +    L  
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL--TKLSDDFRATTLPYLVG 517

Query: 292 DD--QNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLS 349
            D   N      +    PT   N   L            + D   N    + P  +    
Sbjct: 518 IDLSYN------SFSKFPTQPLNSSTLKGF-----GIRNQRDAQGNRTLREWPEGITLCP 566

Query: 350 FLVLLNLYN 358
            L  L + +
Sbjct: 567 SLTQLQIGS 575

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 97.4 bits (243), Expect = 5e-22
 Identities = 50/318 (15%), Positives = 91/318 (28%), Gaps = 54/318 (16%)

Query: 67  CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRN 126
              L  +    N ++G++P   G+ ++L  L LA N  +           ++       N
Sbjct: 329 MKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN 387

Query: 127 ILAGEIPA--EIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSN-------RNNFG 177
            L   IP   +  ++  +  + F   ++      +   L        N        N   
Sbjct: 388 KL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS 446

Query: 178 GKIPESPGQLRSLFYLNVGGNQFSGMFLPVY--------NLSSLEMIYLHDNRLNGNLPP 229
               E       L  +N+ GN  + +             N   L  I L  N+L      
Sbjct: 447 KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506

Query: 230 VIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRL 289
                LP L  I ++ N+F+   P    N+S  +   +   +                  
Sbjct: 507 FRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR------------------ 547

Query: 290 NDDDQNHHGRQQNICYLPTGISNLVNL----------DSLATDSLKSIEELDLSSNNLSG 339
            D   N   R+      P GI+   +L            +      +I  LD+  N    
Sbjct: 548 -DAQGNRTLRE-----WPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLDIKDNPNIS 601

Query: 340 QLPRLLVNLSFLVLLNLY 357
                +       +  L+
Sbjct: 602 IDLSYVCPYIEAGMYMLF 619

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 75.5 bits (186), Expect = 8e-15
 Identities = 35/215 (16%), Positives = 63/215 (29%), Gaps = 34/215 (15%)

Query: 67  CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRN 126
             ++  IN+++N +             L  + L  N  +  IP N               
Sbjct: 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE-IPKNSL------------- 477

Query: 127 ILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLS-SHLEA-DSNRNNFGGKIPESP 184
               +      N + L  +     KLT  L    +  +  +L   D + N+F    P  P
Sbjct: 478 ---KDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQP 532

Query: 185 GQLRSLFYLNVG------GNQFSGMFLP--VYNLSSLEMIYLHDNRLNGNLPPVIGAKLP 236
               +L    +       GN+      P  +    SL  + +  N +   +   I    P
Sbjct: 533 LNSSTLKGFGIRNQRDAQGNRTLRE-WPEGITLCPSLTQLQIGSNDIRK-VNEKI---TP 587

Query: 237 NLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQ 271
           N+  + I  N                    L Y++
Sbjct: 588 NISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  114 bits (286), Expect = 2e-27
 Identities = 44/378 (11%), Positives = 99/378 (26%), Gaps = 60/378 (15%)

Query: 27  NANETDRLALLAIKSQLH-----------DPLEVTSSLTNSVNLCEWTGVTCAS------ 69
                D  AL AI   L            +    + +   +  L  W             
Sbjct: 265 AEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGR 324

Query: 70  LRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILA 129
           +  +++A  G +G +P+ +G L  L+ L    +S + +            +    ++ + 
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 130 GEIPAEIG------NLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPES 183
                         NL  L + +         +    +      +  +  N     I ++
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKA 443

Query: 184 PGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVI 243
             +L  L  +    + F+   + V    +         +   N        L +L  + +
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDAN----SDYAKQYENEELSWS-NLKDLTDVEL 498

Query: 244 ALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNI 303
                   LPD   +    + L ++ N+    +  ++  T  +                I
Sbjct: 499 YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDE--------DTGPKI 550

Query: 304 CYL------------PTGISNLVNLDSL-----------ATDSLKSIEELDLSSNNLSGQ 340
                             +  +V L  L           A  +   + +L L  N +   
Sbjct: 551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEI 610

Query: 341 LPRLLVNLSFLVLLNLYN 358
                     +  L   +
Sbjct: 611 PEDFCAFTDQVEGLGFSH 628

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  109 bits (274), Expect = 6e-26
 Identities = 47/363 (12%), Positives = 94/363 (25%), Gaps = 35/363 (9%)

Query: 7   LQLFSALSLRLWCTTTTTIINANETDRLALLAIKSQLHDPLEVTSSLTNSVNLCEWTGVT 66
            +  +                    D    L +   L D +   +       + + + ++
Sbjct: 368 DEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAI---NRNPEMKPIKKDSRIS 424

Query: 67  CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRN 126
               +  N+        I   +  L +L+ +  AN+ F+          +       +  
Sbjct: 425 LKDTQIGNL--TNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANS-----DYA 477

Query: 127 ILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSS--HLEADSNR-------NNFG 177
                      NL  L  +         QLP  + +L     L    NR           
Sbjct: 478 KQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADW 537

Query: 178 GKIPESPGQLRSLFYLNVGGNQFSGMFLPVY--NLSSLEMIYLHDNRLNGNLPPVIGAKL 235
            ++ +       +    +G N             +  L ++    N++        G   
Sbjct: 538 TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH--LEAFG-TN 594

Query: 236 PNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQN 295
             L  + +  N       D  +     E L  S+N+   K I           +   D +
Sbjct: 595 VKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKL--KYIPNIFNAKSVYVMGSVDFS 652

Query: 296 HHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLN 355
           +      I      IS      S+      +   + LS N +      L    S +  + 
Sbjct: 653 Y----NKIGSEGRNISC-----SMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTII 703

Query: 356 LYN 358
           L N
Sbjct: 704 LSN 706

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 99.6 bits (248), Expect = 1e-22
 Identities = 53/330 (16%), Positives = 98/330 (29%), Gaps = 66/330 (20%)

Query: 67  CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSG---------TIPTNLSLRSK 117
              L  + + +     ++P+ L +L  L+ L +A N              +  +     K
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549

Query: 118 LMLFFANRNILAGEIPAE--IGNLFKLEKLSFCVIKLTGQLPASIQNLSS--HLEADSNR 173
           + +F+   N L  E PA   +  + KL  L     K+   L  +         L+ D N+
Sbjct: 550 IQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQ 606

Query: 174 NNFGGKIPESPGQ-LRSLFYLNVGGNQFSGM--FLPVYNLSSLEMIYLHDNRLNGNLPPV 230
                +IPE        +  L    N+   +       ++  +  +    N++       
Sbjct: 607 IE---EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS-EGRN 662

Query: 231 IGA-----KLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSY 285
           I       K  N   + ++ N       + F+  S    + LS N     SI  ++    
Sbjct: 663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT--SIPENSLKP- 719

Query: 286 SQRLNDDDQNHHGRQQNICYLPTGISNLVNL--------------DSLATDSLKSIEELD 331
                                     N   L              D     +L  +  +D
Sbjct: 720 --------------------KDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMD 759

Query: 332 LSSNNLSGQLPRLLVNLSFLVLLNLYNHFD 361
           +S N  S   P   +N S L    + +  D
Sbjct: 760 VSYNCFSS-FPTQPLNSSQLKAFGIRHQRD 788

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 84.9 bits (210), Expect = 6e-18
 Identities = 49/321 (15%), Positives = 95/321 (29%), Gaps = 58/321 (18%)

Query: 67  CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNL-SLRSKLMLFFANR 125
              L  ++   N  +       G  V+L  L L  N     IP +  +   ++     + 
Sbjct: 572 MVKLGLLDCVHN--KVRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSH 628

Query: 126 NILAGEIP--AEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADS------NRNNFG 177
           N L   IP      +++ +  + F   K+      +I       +  +      + N   
Sbjct: 629 NKLK-YIPNIFNAKSVYVMGSVDFSYNKIGS-EGRNISCSMDDYKGINASTVTLSYNEIQ 686

Query: 178 GKIPESPGQLRSLFYLNVGGNQFS--------GMFLPVYNLSSLEMIYLHDNRLNGNLPP 229
               E       +  + +  N  +               N   L  I L  N+L      
Sbjct: 687 KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD 746

Query: 230 VIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRL 289
                LP L  + ++ N F+   P    N+S  +   + + +                  
Sbjct: 747 FRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR------------------ 787

Query: 290 NDDDQNHHGRQQNICYLPTGISNLVNL----------DSLATDSLKSIEELDLSSNNL-S 338
            D + N   RQ      PTGI+   +L            +       +  LD++ N   S
Sbjct: 788 -DAEGNRILRQ-----WPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADNPNIS 841

Query: 339 GQLPRLLVNLSFLVLLNLYNH 359
             +  +   +   + + LY+ 
Sbjct: 842 IDVTSVCPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 68.7 bits (168), Expect = 1e-12
 Identities = 27/190 (14%), Positives = 52/190 (27%), Gaps = 20/190 (10%)

Query: 66  TCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFS-------GTIPTNLSLRSKL 118
              +   + ++ N +Q            +  +IL+NN  +            N      L
Sbjct: 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730

Query: 119 MLFFANRNILAGEIPAEI--GNLFKLEKLSFCVIKLTGQLPASIQNLSS------HLEAD 170
                  N L   +  +     L  L  +       +   P    N S         + D
Sbjct: 731 TTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRD 788

Query: 171 SNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRL-NGNLPP 229
           +  N    + P       SL  L +G N      +       L ++ + DN   + ++  
Sbjct: 789 AEGNRILRQWPTGITTCPSLIQLQIGSNDIRK--VDEKLTPQLYILDIADNPNISIDVTS 846

Query: 230 VIGAKLPNLR 239
           V       + 
Sbjct: 847 VCPYIEAGMY 856

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  105 bits (263), Expect = 1e-24
 Identities = 61/344 (17%), Positives = 111/344 (32%), Gaps = 38/344 (11%)

Query: 51  SSLTNSVNLCEWTGVTCASLRFINIADN------GVQGEIPNELGNLVRLEKLILANNSF 104
               N  NL ++       L  + I +           +I +    L  +    L + + 
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

Query: 105 SGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLS 164
                 + S                     ++ +L +L   S       G    S  +L 
Sbjct: 295 ER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS-----NKGGNAFSEVDLP 347

Query: 165 S--HLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNR 222
           S   L+   N  +F G   +S     SL YL++  N    M      L  LE +    + 
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 407

Query: 223 LNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAA 282
           L       +   L NL  + I+  +        F+  S+ E L+++ N F+   +     
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-- 465

Query: 283 TSYSQRLNDDDQNHHGRQQNICYLPTGISN--LVNLDSLATDSLKSIEELDLSSNNLSGQ 340
                             +N+ +L   +S   L  L   A +SL S++ L++S NN    
Sbjct: 466 --------------FTELRNLTFL--DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509

Query: 341 LPRLLVNLSFLVLLNL-YNHFDGEVPT--KGVFNNKTRISLAGN 381
                  L+ L +L+   NH         +   ++   ++L  N
Sbjct: 510 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 99.7 bits (249), Expect = 7e-23
 Identities = 55/332 (16%), Positives = 99/332 (29%), Gaps = 17/332 (5%)

Query: 67  CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKL-MLFFANR 125
            + L  + +  N +Q         L  L+KL+    + +      +     L  L  A+ 
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 126 NILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSS---HLEADSNRNNFGGKIPE 182
            I + ++P    NL  LE L     K+       ++ L        +     N    I  
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 183 SPGQLRSLFYLNVGGNQFSGMFLPV--YNLSSLEMIYLHDNRLNG--NLPPVIGAKLPNL 238
              +   L  L +  N  S   +      L+ LE+  L         NL     + L  L
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 239 RKIVIA------LNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDD 292
             + I       L+ +   + D F+  +N     L          +          L + 
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 314

Query: 293 DQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLS--GQLPRLLVNLSF 350
                   +         ++    ++ +   L S+E LDLS N LS  G   +     + 
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 351 LVLLNL-YNHFDGEVPTKGVFNNKTRISLAGN 381
           L  L+L +N                 +    +
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 406

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 95.1 bits (237), Expect = 3e-21
 Identities = 56/333 (16%), Positives = 105/333 (31%), Gaps = 21/333 (6%)

Query: 69  SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNIL 128
           S + ++++ N ++        +   L+ L L+               S L       N +
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 129 AGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSS--HLEADSNRNNFGGKIPESPGQ 186
                     L  L+KL      L       I +L +   L    N      K+PE    
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSN 147

Query: 187 LRSLFYLNVGGNQFSG----MFLPVYNLSSLEM-IYLHDNRLNGNLPPVIGAKLPNLRKI 241
           L +L +L++  N+           ++ +  L + + L  N +N   P     K   L K+
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEIRLHKL 205

Query: 242 VIALNNFTGPLP-DSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQ 300
            +  N  +  +        +  E   L   +FR +        S  + L     N    +
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL----CNLTIEE 261

Query: 301 QNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYNHF 360
             + YL   + ++++L +     L ++    L S  +                L L N  
Sbjct: 262 FRLAYLDYYLDDIIDLFN----CLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCK 315

Query: 361 DGEVPTKGVFNNKTRISLAGNGKLCGGFDGLHS 393
            G+ PT  + + K     +  G        L S
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS 348

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 86.2 bits (214), Expect = 2e-18
 Identities = 56/337 (16%), Positives = 98/337 (29%), Gaps = 69/337 (20%)

Query: 51  SSLTNSVNLCEWTGVTCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPT 110
           + L   ++          ++   ++    ++             + L L N  F      
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTL 322

Query: 111 NLSLRSKLMLFFA---------------------NRNILAGEIPAEIGNLFKLEKLSFCV 149
            L    +L                          N     G           L+ L    
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 150 IKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESP-GQLRSLFYLNVGGNQFSGMFLPV- 207
             +   + ++   L      D   +N       S    LR+L YL++        F  + 
Sbjct: 383 NGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 208 YNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLEL 267
             LSSLE++ +  N    N  P I  +L NL  + ++        P +F++ S+ + L +
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501

Query: 268 SYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSI 327
           S+N F                                           LD+     L S+
Sbjct: 502 SHNNFFS-----------------------------------------LDTFPYKCLNSL 520

Query: 328 EELDLSSNNLSGQLPRLLVNL-SFLVLLNL-YNHFDG 362
           + LD S N++     + L +  S L  LNL  N F  
Sbjct: 521 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 32/199 (16%), Positives = 60/199 (30%), Gaps = 5/199 (2%)

Query: 67  CASLRFINIADNGVQGEIPNE-LGNLVRLEKLILANNSFSGTIPTNLSLRSKL-MLFFAN 124
              L  ++   + ++         +L  L  L +++           +  S L +L  A 
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 125 RNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESP 184
            +     +P     L  L  L     +L    P +  +LSS    + + NNF        
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 514

Query: 185 GQLRSLFYLNVGGNQFSGMFLPV--YNLSSLEMIYLHDNRLNGNLPPV-IGAKLPNLRKI 241
             L SL  L+   N           +  SSL  + L  N              + + R++
Sbjct: 515 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL 574

Query: 242 VIALNNFTGPLPDSFSNAS 260
           ++ +       P       
Sbjct: 575 LVEVERMECATPSDKQGMP 593

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 21/153 (13%), Positives = 42/153 (27%), Gaps = 43/153 (28%)

Query: 211 SSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYN 270
            S + + L  N L            P L+ + ++          ++ + S+   L L+ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 271 QFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEEL 330
             +  +                                  S L +L           ++L
Sbjct: 87  PIQSLA------------------------------LGAFSGLSSL-----------QKL 105

Query: 331 DLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDG 362
                NL+      + +L  L  LN+ +N    
Sbjct: 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  101 bits (253), Expect = 2e-23
 Identities = 54/304 (17%), Positives = 99/304 (32%), Gaps = 53/304 (17%)

Query: 69  SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIP---------TNLSLRSKLM 119
           +L  ++++ N +     +    L +LE   L  N+                 L+L+    
Sbjct: 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308

Query: 120 LFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSS--HLEADSNRNNFG 177
               +   L          L  LE L+     + G        L +  +L   ++  +  
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368

Query: 178 GKIPESPGQL--RSLFYLNVGGNQFSGMFLPV-YNLSSLEMIYLHDNRLNGNLPPVIGAK 234
               E+   L    L  LN+  N+ S +       L  LE++ L  N +   L       
Sbjct: 369 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG 428

Query: 235 LPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQ 294
           L N+ +I ++ N +     +SF+   + +RL L     +                     
Sbjct: 429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN-------------------- 468

Query: 295 NHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLL 354
                   +   P+    L NL             LDLS+NN++     +L  L  L +L
Sbjct: 469 --------VDSSPSPFQPLRNL-----------TILDLSNNNIANINDDMLEGLEKLEIL 509

Query: 355 NLYN 358
           +L +
Sbjct: 510 DLQH 513

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  100 bits (250), Expect = 7e-23
 Identities = 55/321 (17%), Positives = 94/321 (29%), Gaps = 42/321 (13%)

Query: 67  CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRN 126
           C +L  +++  N +Q    N       L  L L++N  S T          L     + N
Sbjct: 96  CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155

Query: 127 ILAGEIPAEIGNLF--KLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESP 184
            +      E+       L+KL     ++    P     +        N    G  + E  
Sbjct: 156 KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215

Query: 185 G---QLRSLFYLNVGGNQFSGM---FLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNL 238
                  S+  L++  +Q S            ++L M+ L  N LN          LP L
Sbjct: 216 CLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA-WLPQL 274

Query: 239 RKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHG 298
               +  NN       S     N   L L  +  +                         
Sbjct: 275 EYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK------------------------- 309

Query: 299 RQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-Y 357
                      +++L  +D  +   LK +E L++  N++ G    +   L  L  L+L  
Sbjct: 310 -------QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362

Query: 358 NHFDGEVPTKGVFNNKTRISL 378
           +       T   F +     L
Sbjct: 363 SFTSLRTLTNETFVSLAHSPL 383

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 98.1 bits (245), Expect = 2e-22
 Identities = 47/298 (15%), Positives = 89/298 (29%), Gaps = 22/298 (7%)

Query: 69  SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNIL 128
           ++  +N+  N ++           +L  L +  N+ S   P        L +     N L
Sbjct: 26  NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85

Query: 129 AGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLR 188
           +            L +L      +            + +  D + N        +  QL 
Sbjct: 86  SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE 145

Query: 189 SLFYLNVGGNQFSGM---FLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIAL 245
           +L  L +  N+   +    L ++  SSL+ + L  N++    P      +  L  + +  
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF-HAIGRLFGLFLNN 204

Query: 246 NNFTGPLPDSFSNASNR---ERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQN 302
                 L +             L LS +Q                    +      +  N
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLST---------------TSNTTFLGLKWTN 249

Query: 303 ICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYNHF 360
           +  L    +NL  + + +   L  +E   L  NN+       L  L  +  LNL   F
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 307

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 93.9 bits (234), Expect = 7e-21
 Identities = 61/327 (18%), Positives = 106/327 (32%), Gaps = 47/327 (14%)

Query: 67  CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLR----SKLMLFF 122
              L  +N+ DN + G   N    L+ L+ L L+N+  S    TN +      S L +  
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 387

Query: 123 ANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPE 182
             +N ++         L  LE L                +L          N  G ++  
Sbjct: 388 LTKNKISKIESDAFSWLGHLEVL----------------DLGL--------NEIGQELTG 423

Query: 183 SP-GQLRSLFYLNVGGNQFSGMFLPV-YNLSSLEMIYLHDNRLNG-NLPPVIGAKLPNLR 239
                L ++F + +  N++  +       + SL+ + L    L   +  P     L NL 
Sbjct: 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483

Query: 240 KIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGR 299
            + ++ NN      D        E L+L +N      +W+ A                  
Sbjct: 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNL--ARLWKHA-------NPGGPIYFLKG 534

Query: 300 QQNICYLPTGISN--LVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL- 356
             ++  L   + +     +       L  ++ +DL  NNL+     +  N   L  LNL 
Sbjct: 535 LSHLHIL--NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQ 592

Query: 357 YNHFDGEVPT--KGVFNNKTRISLAGN 381
            N             F N T + +  N
Sbjct: 593 KNLITSVEKKVFGPAFRNLTELDMRFN 619

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 86.2 bits (214), Expect = 2e-18
 Identities = 54/315 (17%), Positives = 104/315 (33%), Gaps = 59/315 (18%)

Query: 67  CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRN 126
            +SL+ + ++ N ++   P     + RL  L L N     ++   L L            
Sbjct: 170 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL---------- 219

Query: 127 ILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLS-SHLEA-DSNRNNFGGKIPESP 184
                          +  LS    +L+     +   L  ++L   D + NN      +S 
Sbjct: 220 -----------ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 268

Query: 185 GQLRSLFYLNVGGNQFSGMFLPV-YNLSSLEMIYLHDNRLNGNL--------PPVIGAKL 235
             L  L Y  +  N    +F    + L ++  + L  +    ++               L
Sbjct: 269 AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328

Query: 236 PNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSI----WRSAATSYSQRLND 291
             L  + +  N+  G   + F+   N + L LS +    +++    + S A S    LN 
Sbjct: 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN- 387

Query: 292 DDQNHHGRQQNICYLPTGISN--LVNLDSLATDSLKSIEELDLSSNNLSGQLP-RLLVNL 348
                             ++   +  ++S A   L  +E LDL  N +  +L  +    L
Sbjct: 388 ------------------LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL 429

Query: 349 SFLVLLNL-YNHFDG 362
             +  + L YN +  
Sbjct: 430 ENIFEIYLSYNKYLQ 444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 84.3 bits (209), Expect = 9e-18
 Identities = 46/300 (15%), Positives = 87/300 (29%), Gaps = 53/300 (17%)

Query: 69  SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTN-LSLRSKLMLFFANRNI 127
            L  +N+  N +     +    L  LE L L  N     +          +   + + N 
Sbjct: 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441

Query: 128 LAGEIPAEIGNLFKLEKLSFCVIKLTG--QLPASIQNLSSHLEADSNRNNFGGKIPESPG 185
                      +  L++L    + L      P+  Q L +    D + NN      +   
Sbjct: 442 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501

Query: 186 QLRSLFYLNVGGNQFS---------GMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLP 236
            L  L  L++  N  +         G    +  LS L ++ L  N  +  +P  +   L 
Sbjct: 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE-IPVEVFKDLF 560

Query: 237 NLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNH 296
            L+ I + LNN        F+N  + + L L  N                          
Sbjct: 561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS---------------------- 598

Query: 297 HGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL 356
                            V        + +++ ELD+  N        +   ++++   + 
Sbjct: 599 -----------------VEKKVFGP-AFRNLTELDMRFNPFDCTCESIAWFVNWINETHT 640

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.0 bits (177), Expect = 1e-13
 Identities = 42/249 (16%), Positives = 80/249 (32%), Gaps = 43/249 (17%)

Query: 131 EIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSL 190
           ++P ++     +  L+    +L     A+    S     D   N      PE   +L  L
Sbjct: 18  QVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPML 75

Query: 191 FYLNVGGNQFSGMFLPV-YNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFT 249
             LN+  N+ S +        ++L  ++L  N +   +      K  NL  + ++ N  +
Sbjct: 76  KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLS 134

Query: 250 GPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTG 309
                +     N + L LS N+ +                                    
Sbjct: 135 STKLGTQVQLENLQELLLSNNKIQA----------------------------------- 159

Query: 310 ISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYNHFDGEVPTKGV 369
               +  + L   +  S+++L+LSSN +    P     +  L  L L N   G   T+ +
Sbjct: 160 ----LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215

Query: 370 FNNKTRISL 378
                  S+
Sbjct: 216 CLELANTSI 224

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 70.0 bits (172), Expect = 4e-13
 Identities = 38/198 (19%), Positives = 67/198 (33%), Gaps = 11/198 (5%)

Query: 67  CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSG--TIPTNLSLRSKLMLFFAN 124
             ++  I ++ N       N    +  L++L+L   +     + P+       L +   +
Sbjct: 429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488

Query: 125 RNILAGEIPAEIGNLFKLEKLSFCVIKLT--------GQLPASIQNLSSHLEADSNRNNF 176
            N +A      +  L KLE L      L         G     ++ LS     +   N F
Sbjct: 489 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548

Query: 177 GGKIPESPGQLRSLFYLNVGGNQFSGMFLPV-YNLSSLEMIYLHDNRLNGNLPPVIGAKL 235
                E    L  L  +++G N  + +   V  N  SL+ + L  N +      V G   
Sbjct: 549 DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF 608

Query: 236 PNLRKIVIALNNFTGPLP 253
            NL ++ +  N F     
Sbjct: 609 RNLTELDMRFNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 28/175 (16%), Positives = 44/175 (25%), Gaps = 31/175 (17%)

Query: 71  RFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAG 130
               +  +   G     L  L  L  L L +N F            +L +     N L  
Sbjct: 515 NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 574

Query: 131 EIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPES-PGQLRS 189
              +   N   L+ L                NL          N       +      R+
Sbjct: 575 LPASVFNNQVSLKSL----------------NLQK--------NLITSVEKKVFGPAFRN 610

Query: 190 LFYLNVGGNQFSG------MFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNL 238
           L  L++  N F         F+   N +   +  L  + L    P   G  +   
Sbjct: 611 LTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLF 665

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 22/147 (14%), Positives = 45/147 (30%), Gaps = 21/147 (14%)

Query: 212 SLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQ 271
           S E+      +L   +P  +     N+  + +  N        +F+  S    L++ +N 
Sbjct: 5   SHEVADCSHLKLT-QVPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 272 FRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELD 331
                                +     +   +  L    + L  L         ++ EL 
Sbjct: 61  ISKL-----------------EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103

Query: 332 LSSNNLSGQLPRLLVNLSFLVLLNLYN 358
           L SN++        V    L+ L+L +
Sbjct: 104 LMSNSIQKIKNNPFVKQKNLITLDLSH 130

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 94.2 bits (235), Expect = 9e-22
 Identities = 51/300 (17%), Positives = 95/300 (31%), Gaps = 67/300 (22%)

Query: 69  SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNIL 128
               + +    +  + P++   L  L+ + +        +P  +   + L      RN L
Sbjct: 82  GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL 139

Query: 129 AGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLR 188
              +PA I +L +L +LS        +LP  + +  +                     L 
Sbjct: 140 R-ALPASIASLNRLRELSIRACPELTELPEPLASTDA---------------SGEHQGLV 183

Query: 189 SLFYLNVGGNQFSGMFLP--VYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALN 246
           +L  L +         LP  + NL +L+ + + ++ L+  L P I   LP L ++ +   
Sbjct: 184 NLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLSA-LGPAIH-HLPKLEELDLRGC 239

Query: 247 NFTGPLPDSFSNASNRERLELS-YNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICY 305
                 P  F   +  +RL L   +                                   
Sbjct: 240 TALRNYPPIFGGRAPLKRLILKDCSNLL-------------------------------T 268

Query: 306 LPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYNHFDGEVP 365
           LP  I  L  L           E+LDL       +LP L+  L    ++ +  H   ++ 
Sbjct: 269 LPLDIHRLTQL-----------EKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 22/201 (10%), Positives = 44/201 (21%), Gaps = 49/201 (24%)

Query: 159 SIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYL 218
              + S         +     +      L                     N ++ ++   
Sbjct: 7   HHHHSSGRENLYFQGST---ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETR 63

Query: 219 HDNRLNGNLPPVIG-AKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSI 277
               L      ++  A  P    + +         PD     S+ + + +          
Sbjct: 64  TGRALK-ATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM---- 117

Query: 278 WRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNL 337
                                       LP  +     L           E L L+ N L
Sbjct: 118 ---------------------------ELPDTMQQFAGL-----------ETLTLARNPL 139

Query: 338 SGQLPRLLVNLSFLVLLNLYN 358
              LP  + +L+ L  L++  
Sbjct: 140 R-ALPASIASLNRLRELSIRA 159

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 92.4 bits (230), Expect = 2e-20
 Identities = 61/318 (19%), Positives = 105/318 (33%), Gaps = 20/318 (6%)

Query: 69  SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNIL 128
           S+  IN+  +       N       L++L L     S  +P+ L   S L     + N  
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKF 313

Query: 129 AGEIPAEIGNLFKLEKLSFCVIKLTGQL-PASIQNLSS--HLEADSNRNNFGGKIPESPG 185
                    N   L  LS        +L    ++NL +   L+   +             
Sbjct: 314 ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373

Query: 186 QLRSLFYLNVGGNQFSGMFLPV-YNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIA 244
            L  L  LN+  N+   +          LE++ L   RL           L  L+ + ++
Sbjct: 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433

Query: 245 LNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNIC 304
            +         F      + L L  N F   +I ++ +     RL     +         
Sbjct: 434 HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF-----C-- 486

Query: 305 YLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYNHFDGEV 364
                  +L ++D  A  SLK +  +DLS N L+      L +L  + L    NH    +
Sbjct: 487 -------DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIIL 539

Query: 365 PTK-GVFNNKTRISLAGN 381
           P+   + + +  I+L  N
Sbjct: 540 PSLLPILSQQRTINLRQN 557

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 87.4 bits (217), Expect = 8e-19
 Identities = 53/324 (16%), Positives = 99/324 (30%), Gaps = 27/324 (8%)

Query: 69  SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNIL 128
           +L F+++    +     +   +  RL+ L+L  N       T LS    L   F  +  +
Sbjct: 58  NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGI 117

Query: 129 AGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLR 188
           +      + N   LE L      ++                D   N       E    L+
Sbjct: 118 SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177

Query: 189 SL--FYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVI-GAKLPNLRKIVIAL 245
                 LN+ GN  +G+    ++ +  + +     +    +   +  + + +L       
Sbjct: 178 QATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFED 237

Query: 246 NNFTGPLPDSFSNASNR--ERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNI 303
            +     P  F        E + L  + F   S       S  Q L D          ++
Sbjct: 238 MDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQEL-DLTAT------HL 290

Query: 304 CYLPTGISNLVNLDSL-------------ATDSLKSIEELDLSSNNLSGQL-PRLLVNLS 349
             LP+G+  L  L  L             +  +  S+  L +  N    +L    L NL 
Sbjct: 291 SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350

Query: 350 FLVLLNL-YNHFDGEVPTKGVFNN 372
            L  L+L ++  +          N
Sbjct: 351 NLRELDLSHDDIETSDCCNLQLRN 374

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 82.0 bits (203), Expect = 5e-17
 Identities = 51/325 (15%), Positives = 100/325 (30%), Gaps = 55/325 (16%)

Query: 69  SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLS-LRSKLMLFFANRNI 127
           +L  + +  N +      +     +L+ L   NN+       ++S L+    L       
Sbjct: 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189

Query: 128 LAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLS--------------SHLEADS-- 171
               I     +    + L+F   +    +   ++N +                +      
Sbjct: 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249

Query: 172 ------------NRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLH 219
                        ++ F      +      L  L++     S +   +  LS+L+ + L 
Sbjct: 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLS 309

Query: 220 DNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPL-PDSFSNASNRERLELSYNQFRGKSIW 278
            N+    L  +  +  P+L  + I  N     L      N  N   L+LS++        
Sbjct: 310 ANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC 368

Query: 279 RSAATSYS--QRLNDDDQNHHGRQQNICYLPTGISN--LVNLDSLATDSLKSIEELDLSS 334
                + S  Q LN                   +S    ++L + A      +E LDL+ 
Sbjct: 369 NLQLRNLSHLQSLN-------------------LSYNEPLSLKTEAFKECPQLELLDLAF 409

Query: 335 NNLSGQLPR-LLVNLSFLVLLNLYN 358
             L  +  +    NL  L +LNL +
Sbjct: 410 TRLKVKDAQSPFQNLHLLKVLNLSH 434

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 79.7 bits (197), Expect = 3e-16
 Identities = 47/303 (15%), Positives = 88/303 (29%), Gaps = 39/303 (12%)

Query: 69  SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNIL 128
           S   +  + N +          L+ L  L L               + +L       N L
Sbjct: 34  STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93

Query: 129 AGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLR 188
                  +     L+ L F                         +              +
Sbjct: 94  IFMAETALSGPKALKHLFF------------------------IQTGISSIDFIPLHNQK 129

Query: 189 SLFYLNVGGNQFSGMFLPV-YNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALN- 246
           +L  L +G N  S + LP  +    L+++   +N ++  L     + L     + + LN 
Sbjct: 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNG 188

Query: 247 NFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYS--QRLNDDDQNHHGRQQNIC 304
           N    +     +++  + L     Q           ++         +D +       + 
Sbjct: 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248

Query: 305 YLPTGIS---------NLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLN 355
                +S            N+ S        ++ELDL++ +LS +LP  LV LS L  L 
Sbjct: 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLV 307

Query: 356 LYN 358
           L  
Sbjct: 308 LSA 310

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 76.6 bits (189), Expect = 3e-15
 Identities = 46/289 (15%), Positives = 80/289 (27%), Gaps = 40/289 (13%)

Query: 83  EIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKL 142
           EIP  L N    E L  + N       T  S    L      R  +         +  +L
Sbjct: 26  EIPGTLPNS--TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRL 83

Query: 143 EKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSG 202
           + L                 L++        N        +    ++L +L       S 
Sbjct: 84  DTL----------------VLTA--------NPLIFMAETALSGPKALKHLFFIQTGISS 119

Query: 203 M-FLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASN 261
           + F+P++N  +LE +YL  N ++    P        L+ +    N       +  S+   
Sbjct: 120 IDFIPLHNQKTLESLYLGSNHISSIKLPKG-FPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178

Query: 262 RERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLD---- 317
              L L+ N      I   A  S   +  +     +          + I +L        
Sbjct: 179 ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238

Query: 318 --------SLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYN 358
                           S+E ++L  +             S L  L+L  
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTA 287

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 75.4 bits (186), Expect = 6e-15
 Identities = 49/287 (17%), Positives = 96/287 (33%), Gaps = 16/287 (5%)

Query: 67  CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRN 126
            + L+ +++    +  E+P+ L  L  L+KL+L+ N F      + S    L       N
Sbjct: 277 FSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335

Query: 127 ILAGEIPAE-IGNLFKLEKL--SFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPES 183
               E+    + NL  L +L  S   I+ +      ++NLS     + + N       E+
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA 395

Query: 184 PGQLRSLFYLNVGGNQFSGMFLPVY--NLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKI 241
             +   L  L++   +           NL  L+++ L  + L+      +   LP L+ +
Sbjct: 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI-SSEQLFDGLPALQHL 454

Query: 242 VIALNNFTG---PLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLN------DD 292
            +  N+F        +S       E L LS+            +      ++        
Sbjct: 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514

Query: 293 DQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSG 339
                       YL    +++  +       L     ++L  N L  
Sbjct: 515 SSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.4 bits (147), Expect = 5e-10
 Identities = 36/226 (15%), Positives = 68/226 (30%), Gaps = 37/226 (16%)

Query: 55  NSVNLCEWTGVTCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNL-- 112
            + + C       + L+ +N++ N              +LE L LA          +   
Sbjct: 363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ 422

Query: 113 SLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSN 172
           +L    +L  ++ ++L          L  L+ L                NL         
Sbjct: 423 NLHLLKVLNLSH-SLLDISSEQLFDGLPALQHL----------------NLQ-------- 457

Query: 173 RNNFGGKIPESPG---QLRSLFYLNVGGNQFSGMFLPVY---NLSSLEMIYLHDNRLNGN 226
            N+F     +       L  L  L +     S   +  +   +L  +  + L  NRL   
Sbjct: 458 GNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS--IDQHAFTSLKMMNHVDLSHNRLTS- 514

Query: 227 LPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQF 272
                 + L  +  + +A N+ +  LP      S +  + L  N  
Sbjct: 515 SSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 32/243 (13%), Positives = 64/243 (26%), Gaps = 47/243 (19%)

Query: 161 QNLSSHLEA-DSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPV-YNLSSLEMIYL 218
             L +  E  + + N        +  +L +L +L++   Q   +      +   L+ + L
Sbjct: 29  GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVL 88

Query: 219 HDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIW 278
             N L   +     +    L+ +       +        N    E L L  N        
Sbjct: 89  TANPLIF-MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH------- 140

Query: 279 RSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLS 338
                                             + ++        + ++ LD  +N + 
Sbjct: 141 ----------------------------------ISSIKLPKGFPTEKLKVLDFQNNAIH 166

Query: 339 G---QLPRLLVNLSFLVLLNLYNHFDGEVPTKGVFNNKTRISLAGNGKLCGGFDGLHSPS 395
               +    L   + L L    N   G  P          ++  G   L   F GL + +
Sbjct: 167 YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNST 226

Query: 396 CHS 398
             S
Sbjct: 227 IQS 229

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 81.2 bits (201), Expect = 9e-17
 Identities = 56/360 (15%), Positives = 109/360 (30%), Gaps = 32/360 (8%)

Query: 4   PSVLQLFSALSLRLWCTTTTTIINANETDRLALLAIKSQLHDPLEVTSSLTNSVNLCEWT 63
               Q      L L     ++ I       LA L +   +    +   +L          
Sbjct: 198 DQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE-IFEPSIME 256

Query: 64  GVTCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFA 123
           G+   ++    +       +   +   L  +  + LA  S    +           L   
Sbjct: 257 GLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKHFKWQSLSII 315

Query: 124 NRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSS--HLEADSNRNNFGGKIP 181
              +   + P    +L  L+ L+  + K +  +      L S  +L+   N  +F G   
Sbjct: 316 RCQL--KQFPT--LDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCS 369

Query: 182 ESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKI 241
            S     SL +L++  N    M      L  L+ +    + L           L  L  +
Sbjct: 370 YSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429

Query: 242 VIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYS-QRLNDDDQNHHGRQ 300
            I+  N        F   ++   L+++ N F+  ++    A + +   L+          
Sbjct: 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD---------- 479

Query: 301 QNICYLPTGISN--LVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYN 358
                    +S   L  +     D+L  ++ L++S NNL          L  L  L+   
Sbjct: 480 ---------LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 78.2 bits (193), Expect = 8e-16
 Identities = 55/306 (17%), Positives = 89/306 (29%), Gaps = 19/306 (6%)

Query: 69  SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNIL 128
            L++++++   ++         L  L  LIL  N      P + S  + L    A    L
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116

Query: 129 AGEIPAEIGNLFKLEKL--SFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQ 186
           A      IG L  L+KL  +   I  + +LPA   NL++ +  D + N            
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIH-SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175

Query: 187 LR----SLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIV 242
           LR        L++  N    +    +    L  + L  N  + N+       L  L    
Sbjct: 176 LRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHR 235

Query: 243 IALNNFTG------PLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQ----RLNDD 292
           + L  F          P       +    E         S         +      L   
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295

Query: 293 DQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLV 352
              +           +       L    T  L  ++ L L+ N  S       V L  L 
Sbjct: 296 SIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFK--KVALPSLS 353

Query: 353 LLNLYN 358
            L+L  
Sbjct: 354 YLDLSR 359

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.0 bits (177), Expect = 9e-14
 Identities = 47/297 (15%), Positives = 83/297 (27%), Gaps = 40/297 (13%)

Query: 68  ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNI 127
           +S + I+++ N ++        N   L+ L L+                 L       N 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 128 LAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQL 187
           +    P     L  LE L                                       GQL
Sbjct: 92  IQSFSPGSFSGLTSLENLVA------------------------VETKLASLESFPIGQL 127

Query: 188 RSLFYLNVGGNQFSGMFLPVY--NLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIAL 245
            +L  LNV  N      LP Y  NL++L  + L  N +   +       L    ++ ++L
Sbjct: 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSL 186

Query: 246 ----NNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQ 301
               N        +F      E L L  N      +           ++         ++
Sbjct: 187 DMSLNPIDFIQDQAFQGIKLHE-LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245

Query: 302 NICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYN 358
           N+      I  +  L  +      +I+E  L+  N           L+ +  ++L  
Sbjct: 246 NLEIFEPSI--MEGLCDV------TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG 294

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.0 bits (177), Expect = 1e-13
 Identities = 44/323 (13%), Positives = 92/323 (28%), Gaps = 33/323 (10%)

Query: 67  CASLRFINIADNGVQGEIPNELGNL----VRLEKLILANNSFSGTIPTNLSLRSKLMLFF 122
             +L  ++++ N +Q    N+L  L         L ++ N                 L  
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTL 211

Query: 123 ANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLS--------SHLEADSNRN 174
                 +  +   + NL  L      + +   +    I   S        +  E      
Sbjct: 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271

Query: 175 NFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAK 234
           N           L ++  +++ G     +   V      + + +   +L           
Sbjct: 272 NDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQ----FPTLD 326

Query: 235 LPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFR--GKSIWRSAATSYSQRLNDD 292
           LP L+ + + +N  +           +   L+LS N     G   +    T+  + L+  
Sbjct: 327 LPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS 384

Query: 293 DQNHHGRQQNICYLP---------TGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPR 343
                    N   L          + +  +    +    SL+ +  LD+S  N       
Sbjct: 385 FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFL--SLEKLLYLDISYTNTKIDFDG 442

Query: 344 LLVNLSFLVLLNL-YNHFDGEVP 365
           + + L+ L  L +  N F     
Sbjct: 443 IFLGLTSLNTLKMAGNSFKDNTL 465

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 71.2 bits (175), Expect = 2e-13
 Identities = 48/287 (16%), Positives = 92/287 (32%), Gaps = 52/287 (18%)

Query: 58  NLCEWTGVTCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPT---NLSL 114
            L ++  +    L+ + +  N  +G I  +   L  L  L L+ N+ S +      +L  
Sbjct: 318 QLKQFPTLDLPFLKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGT 375

Query: 115 RSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPAS-IQNLSSHLEADSNR 173
            S   L  +    +   + A    L +L+ L F    L      S   +L   L  D + 
Sbjct: 376 NSLRHLDLSFNGAI--IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433

Query: 174 NNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPV--YNLSSLEMIYLHDNRLNGNLPPVI 231
            N           L SL  L + GN F    L     N ++L  + L   +L   +   +
Sbjct: 434 TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ-ISWGV 492

Query: 232 GAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLND 291
              L  L+ + ++ NN        ++   +   L+ S+N+                    
Sbjct: 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET----------------- 535

Query: 292 DDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLS 338
                                      +     KS+   +L++N+++
Sbjct: 536 ------------------------SKGILQHFPKSLAFFNLTNNSVA 558

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 76.5 bits (188), Expect = 3e-15
 Identities = 64/297 (21%), Positives = 101/297 (34%), Gaps = 70/297 (23%)

Query: 68  ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNI 127
           A +  + I DN +   +P        L  L ++ N  + ++P       +L +F      
Sbjct: 61  AHITTLVIPDNNLT-SLPALPPE---LRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLT- 114

Query: 128 LAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQL 187
               +PA       L KL     +LT  LP     L   L    N+      +P  P +L
Sbjct: 115 ---HLPALPSG---LCKLWIFGNQLT-SLPVLPPGLQE-LSVSDNQLA---SLPALPSEL 163

Query: 188 RSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNN 247
                L    NQ +   LP+   S L+ + + DN+L  +LP +       L K+    N 
Sbjct: 164 CK---LWAYNNQLT--SLPM-LPSGLQELSVSDNQLA-SLPTLPS----ELYKLWAYNNR 212

Query: 248 FTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLP 307
            T  LP   S     + L +S N+                               +  LP
Sbjct: 213 LT-SLPALPSGL---KELIVSGNR-------------------------------LTSLP 237

Query: 308 TGISNLVNLD----SLAT--DSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYN 358
              S L  L      L +       +  L +  N L+ +LP  L++LS    +NL  
Sbjct: 238 VLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 293

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 74.5 bits (183), Expect = 1e-14
 Identities = 57/287 (19%), Positives = 99/287 (34%), Gaps = 35/287 (12%)

Query: 69  SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNIL 128
            L  + I  N +   +P     L   ++L +++N  + ++P   S   KL       N L
Sbjct: 122 GLCKLWIFGNQLT-SLPVLPPGL---QELSVSDNQLA-SLPALPSELCKLWA---YNNQL 173

Query: 129 AGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLR 188
              +P     L +L  +S   +     LP     L   L A +NR      +P  P  L+
Sbjct: 174 T-SLPMLPSGLQELS-VSDNQLA---SLPTLPSELYK-LWAYNNRLT---SLPALPSGLK 224

Query: 189 SLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNF 248
            L    V GN+ +   LPV   S L+ + +  NRL  +LP +       L  + +  N  
Sbjct: 225 EL---IVSGNRLTS--LPV-LPSELKELMVSGNRLT-SLPMLPS----GLLSLSVYRNQL 273

Query: 249 TGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPT 308
           T  LP+S  + S+   + L  N                + +           +      +
Sbjct: 274 TR-LPESLIHLSSETTVNLEGNPL------SERTLQALREITSAPGYSGPIIRFDMAGAS 326

Query: 309 GISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLN 355
                  L   A D L    E + +  +      +     +F + L+
Sbjct: 327 APRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLD 373

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 70.7 bits (173), Expect = 2e-13
 Identities = 61/295 (20%), Positives = 96/295 (32%), Gaps = 89/295 (30%)

Query: 67  CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRN 126
                 +N+ ++G+   +P+ L     +  L++ +N+ +                     
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT--------------------- 74

Query: 127 ILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQ 186
                +PA    L     L     +LT  LP     L   L   SN       +P  P  
Sbjct: 75  ----SLPALPPEL---RTLEVSGNQLT-SLPVLPPGLLE-LSIFSNPLT---HLPALPSG 122

Query: 187 LRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALN 246
           L  L    + GNQ +   LPV     L+ + + DN+L  +LP +       L K+    N
Sbjct: 123 LCKL---WIFGNQLT--SLPV-LPPGLQELSVSDNQLA-SLPALPS----ELCKLWAYNN 171

Query: 247 NFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYL 306
             T  LP   S     + L +S NQ                               +  L
Sbjct: 172 QLTS-LPMLPSGL---QELSVSDNQ-------------------------------LASL 196

Query: 307 PTGISNLVNLDSLA------TDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLN 355
           PT  S L  L +              ++EL +S N L+  LP L   L  L++  
Sbjct: 197 PTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVLPSELKELMVSG 250

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.1 bits (135), Expect = 1e-08
 Identities = 46/222 (20%), Positives = 65/222 (29%), Gaps = 57/222 (25%)

Query: 141 KLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQF 200
               L+     LT  LP  +    + L    N       +P  P +LR+   L V GNQ 
Sbjct: 41  GNAVLNVGESGLT-TLPDCLPAHITTLVIPDNNLT---SLPALPPELRT---LEVSGNQL 93

Query: 201 SGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNAS 260
           + + +    L  L +       L              L K+ I  N  T  LP       
Sbjct: 94  TSLPVLPPGLLELSIFSNPLTHLPAL--------PSGLCKLWIFGNQLTS-LPVLPPGL- 143

Query: 261 NRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLA 320
             + L +S NQ                               +  LP   S L  L +  
Sbjct: 144 --QELSVSDNQ-------------------------------LASLPALPSELCKLWAYN 170

Query: 321 T------DSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL 356
                       ++EL +S N L+  LP L   L  L   N 
Sbjct: 171 NQLTSLPMLPSGLQELSVSDNQLA-SLPTLPSELYKLWAYNN 211

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 72.1 bits (177), Expect = 7e-14
 Identities = 60/347 (17%), Positives = 103/347 (29%), Gaps = 24/347 (6%)

Query: 69  SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNIL 128
            L+ ++++   +Q        +L  L  LIL  N          S  S L    A    L
Sbjct: 53  ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112

Query: 129 AGEIPAEIGNLFKLEKLSFCVIKLT-GQLPASIQNLSSHLEADSNRNNFGGKIPESPGQL 187
           A      IG+L  L++L+     +   +LP    NL++    D + N            L
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

Query: 188 RSL----FYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVI 243
             +      L++  N  + +    +    L  + L +N  + N+       L  L    +
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232

Query: 244 AL------NNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDD-QNH 296
            L       N       +     N    E                 +    ++     + 
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292

Query: 297 HGRQQNICYLPTGISNL----VNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLV 352
              +        G  +L           T  LKS++ L  +SN          V+L  L 
Sbjct: 293 TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLE 350

Query: 353 LLNL-YNHFDGEVPTKGVFNNKT---RISLAGNG--KLCGGFDGLHS 393
            L+L  N    +          T    + L+ NG   +   F GL  
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 397

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 53/281 (18%), Positives = 95/281 (33%), Gaps = 31/281 (11%)

Query: 83  EIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKL 142
           +I +    L  +    L + +       + S                 + P     L  L
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFG-QFPT--LKLKSL 327

Query: 143 EKLSFCVIKLTGQLPASIQNLSS--HLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQF 200
           ++L+F   K       S  +L S   L+   N  +F G   +S     SL YL++  N  
Sbjct: 328 KRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385

Query: 201 SGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNAS 260
             M      L  LE +    + L       +   L NL  + I+  +        F+  S
Sbjct: 386 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445

Query: 261 NRERLELSYNQFRGKSIWRSAATSYS-QRLNDDDQNHHGRQQNICYLPTGISN--LVNLD 317
           + E L+++ N F+   +        +   L+                   +S   L  L 
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLD-------------------LSQCQLEQLS 486

Query: 318 SLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYN 358
             A +SL S++ L+++SN L      +   L+ L  + L+ 
Sbjct: 487 PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 48/334 (14%), Positives = 87/334 (26%), Gaps = 51/334 (15%)

Query: 83  EIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKL 142
           +IP+ L      + L L+ N        +     +L +   +R  +         +L  L
Sbjct: 21  KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 143 EKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSG 202
             L                 L+         N        +   L SL  L       + 
Sbjct: 79  STL----------------ILTG--------NPIQSLALGAFSGLSSLQKLVAVETNLAS 114

Query: 203 M-FLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASN 261
           +   P+ +L +L+ + +  N +     P   + L NL  + ++ N               
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174

Query: 262 ----RERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQ------QNICYL----- 306
                  L+LS N      I   A             N           Q +  L     
Sbjct: 175 MPLLNLSLDLSLNPM--NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232

Query: 307 -PTGISNLVNLDSLATDSLKSIEELDLSSNNLSG------QLPRLLVNLSFLVLLNLYNH 359
                 N  NL+     +L+ +  L +    L+        +  L   L+ +   +L + 
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292

Query: 360 FDGEVPTKGVFNNKTRISLAGNGKLCGGFDGLHS 393
               V           + L            L S
Sbjct: 293 TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS 326

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 35/177 (19%), Positives = 66/177 (37%), Gaps = 4/177 (2%)

Query: 55  NSVNLCEWTGVTCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSL 114
           +    C  +     SL++++++ NGV   + +    L +LE L   +++       ++ L
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 115 R-SKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEA-DSN 172
               L+    +              L  LE L              I     +L   D +
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478

Query: 173 RNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVY-NLSSLEMIYLHDNRLNGNLP 228
           +       P +   L SL  LN+  NQ   +   ++  L+SL+ I+LH N  + + P
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 70.6 bits (174), Expect = 1e-13
 Identities = 62/295 (21%), Positives = 104/295 (35%), Gaps = 68/295 (23%)

Query: 69  SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIP-TNLSLRSKLMLFFANRNI 127
            L  + I  N  +    + L NL  L +L L  ++ S   P  NL+    L L   N N+
Sbjct: 89  KLTNLYIGTN--KITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGA-NHNL 145

Query: 128 LAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSS--HLEADSNRNNFGGKIPESP- 184
                 + + N+  L  L+    K+       I NL+    L  + N+      I +   
Sbjct: 146 ---SDLSPLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQ------IEDISP 194

Query: 185 -GQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVI 243
              L SL Y     NQ +    PV N++ L  + + +N++  +L P+  A L  L  + I
Sbjct: 195 LASLTSLHYFTAYVNQITD-ITPVANMTRLNSLKIGNNKIT-DLSPL--ANLSQLTWLEI 250

Query: 244 ALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNI 303
             N  +    ++  + +  + L +  NQ                                
Sbjct: 251 GTNQISDI--NAVKDLTKLKMLNVGSNQI------------------------------- 277

Query: 304 CYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYN 358
               + IS L NL  L          L L++N L  +   ++  L+ L  L L  
Sbjct: 278 ----SDISVLNNLSQL--------NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ 320

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.8 bits (151), Expect = 8e-11
 Identities = 54/292 (18%), Positives = 103/292 (35%), Gaps = 60/292 (20%)

Query: 67  CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRN 126
             S+  + +A   V       +  L  LE L L  N  +   P  LS   KL   +   N
Sbjct: 43  LESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN 98

Query: 127 ILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQ 186
            +     + + NL  L +L      ++    + + NL+  + + +   N           
Sbjct: 99  KI--TDISALQNLTNLRELYLNEDNISD--ISPLANLTK-MYSLNLGANHNLSDLSPLSN 153

Query: 187 LRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALN 246
           +  L YL V  ++   +  P+ NL+ L  + L+ N++  ++ P+  A L +L      +N
Sbjct: 154 MTGLNYLTVTESKVKDVT-PIANLTDLYSLSLNYNQIE-DISPL--ASLTSLHYFTAYVN 209

Query: 247 NFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYL 306
             T       +N +    L++  N+                                   
Sbjct: 210 QITDI--TPVANMTRLNSLKIGNNKI---------------------------------- 233

Query: 307 PTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYN 358
            T +S L NL  L          L++ +N +S      + +L+ L +LN+ +
Sbjct: 234 -TDLSPLANLSQL--------TWLEIGTNQISD--INAVKDLTKLKMLNVGS 274

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.6 bits (140), Expect = 2e-09
 Identities = 40/209 (19%), Positives = 79/209 (37%), Gaps = 19/209 (9%)

Query: 69  SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIP-TNLSLRSKLMLFFANRNI 127
            +  +N+  N    ++   L N+  L  L +  +      P  NL+    L     N N 
Sbjct: 133 KMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTPIANLT---DLYSLSLNYNQ 188

Query: 128 LAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSS--HLEADSNRNNFGGKIPESPG 185
           +    P  + +L  L   +  V ++T      + N++    L+  +N+            
Sbjct: 189 IEDISP--LASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKIT----DLSPLA 240

Query: 186 QLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIAL 245
            L  L +L +G NQ S +   V +L+ L+M+ +  N+++ ++  +    L  L  + +  
Sbjct: 241 NLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQIS-DISVL--NNLSQLNSLFLNN 296

Query: 246 NNFTGPLPDSFSNASNRERLELSYNQFRG 274
           N       +     +N   L LS N    
Sbjct: 297 NQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.4 bits (137), Expect = 4e-09
 Identities = 46/284 (16%), Positives = 92/284 (32%), Gaps = 62/284 (21%)

Query: 88  LGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF 147
             +L    + +L   S +  +         +         +A  I   I  L  LE L+ 
Sbjct: 18  DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SIQG-IEYLTNLEYLNL 73

Query: 148 CVIKLTGQLPASIQNLSS--HLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL 205
              ++T   P  + NL    +L   +N+         +   L +L  L +  +  S    
Sbjct: 74  NGNQITDISP--LSNLVKLTNLYIGTNKI----TDISALQNLTNLRELYLNEDNISD-IS 126

Query: 206 PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERL 265
           P+ NL+ +  + L  N    +L P+  + +  L  + +  +      P   +N ++   L
Sbjct: 127 PLANLTKMYSLNLGANHNLSDLSPL--SNMTGLNYLTVTESKVKDVTP--IANLTDLYSL 182

Query: 266 ELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSL------ 319
            L+YNQ                                    + +++L +L         
Sbjct: 183 SLNYNQIED--------------------------------ISPLASLTSLHYFTAYVNQ 210

Query: 320 -----ATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYN 358
                   ++  +  L + +N ++   P  L NLS L  L +  
Sbjct: 211 ITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGT 252

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.9 bits (115), Expect = 3e-06
 Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 17/159 (10%)

Query: 69  SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIP----TNLSLRSKLMLFFAN 124
           SL +     N +    P  + N+ RL  L + NN  +   P    + L+      L    
Sbjct: 200 SLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLSQLT-----WLEIGT 252

Query: 125 RNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESP 184
             I        + +L KL+ L+    +++    + + NLS       N N  G +  E  
Sbjct: 253 NQI---SDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVI 307

Query: 185 GQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRL 223
           G L +L  L +  N  +    P+ +LS ++     +  +
Sbjct: 308 GGLTNLTTLFLSQNHITD-IRPLASLSKMDSADFANQVI 345

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 68.8 bits (168), Expect = 8e-13
 Identities = 52/281 (18%), Positives = 97/281 (34%), Gaps = 46/281 (16%)

Query: 83  EIPNELGNLV-RLEKLILANNSF--SGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNL 139
               +  +   + EK  L   +   + ++     +     L     N+    +P  +   
Sbjct: 24  GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNL--SSLPDNLPP- 80

Query: 140 FKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQ 199
            ++  L      L   LP    +L  +L+A  NR +    +PE P  L+   +L+V  NQ
Sbjct: 81  -QITVLEITQNALI-SLPELPASLE-YLDACDNRLS---TLPELPASLK---HLDVDNNQ 131

Query: 200 FSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNA 259
            +   LP    + LE I   +N+L   LP        +L  + +  N  T  LP+   + 
Sbjct: 132 LT--MLPE-LPALLEYINADNNQLT-MLP----ELPTSLEVLSVRNNQLTF-LPELPESL 182

Query: 260 SNRERLELSYNQFRG--KSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLD 317
              E L++S N          R+  +  ++      +N       I ++P  I +L    
Sbjct: 183 ---EALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENR------ITHIPENILSLDPT- 232

Query: 318 SLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYN 358
                       + L  N LS ++   L   +     +   
Sbjct: 233 ----------CTIILEDNPLSSRIRESLSQQTAQPDYHGPR 263

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 49.2 bits (117), Expect = 1e-06
 Identities = 39/230 (16%), Positives = 67/230 (29%), Gaps = 18/230 (7%)

Query: 68  ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNI 127
           ASL+ +++ +N +   +P     L   E +   NN  +  +P   +    L +     N 
Sbjct: 120 ASLKHLDVDNNQLT-MLPELPALL---EYINADNNQLT-MLPELPT---SLEVLSVRNNQ 171

Query: 128 LAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSN---RNNFGGKIPESP 184
           L   +P    +L  L+ +S  +++    LPA         E +     R N    IPE+ 
Sbjct: 172 L-TFLPELPESLEALD-VSTNLLE---SLPAVPVRNHHSEETEIFFRCRENRITHIPENI 226

Query: 185 GQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIA 244
             L     + +  N  S       +LS       +                 +       
Sbjct: 227 LSLDPTCTIILEDNPLSS--RIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAV 284

Query: 245 LNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQ 294
              F        S   +    E   N F       S   S        +Q
Sbjct: 285 TAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQ 334

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 67.4 bits (165), Expect = 3e-12
 Identities = 48/335 (14%), Positives = 102/335 (30%), Gaps = 39/335 (11%)

Query: 69  SLRFINIADNGVQGEIPNE-LGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNI 127
           +L+ + I +     EI       L  L +L +   S       +L     +     + + 
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183

Query: 128 LAGEIPAEIGNLFKLEKLSFCVIKLTG--QLPASIQNLSSHLEADSNRNNF-----GGKI 180
            A  +      L  +  L      L      P  +  +SS ++  + R +        ++
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243

Query: 181 PESPGQLRSLFYLNVGGNQFSGM-------FLPVYNLSSLEMIYLHDNRLNGN----LPP 229
            +    +  L  +       +G+          V  L  +E + +    +          
Sbjct: 244 LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303

Query: 230 VIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRL 289
            + + L  +++I +  +           +  + E L+LS N    + +  SA       L
Sbjct: 304 TVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363

Query: 290 N--DDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVN 347
                 QNH             + ++         +LK++  LD+S N     +P     
Sbjct: 364 QTLVLSQNH-------------LRSM-QKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW 408

Query: 348 LSFLVLLNL-YNHFDGEVPTKGVFNNKTRISLAGN 381
              +  LNL        V T  +      + ++ N
Sbjct: 409 PEKMRFLNLSSTGIR-VVKT-CIPQTLEVLDVSNN 441

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 40/235 (17%), Positives = 69/235 (29%), Gaps = 26/235 (11%)

Query: 138 NLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGG 197
               + +L      L   L      L          +            L+SL +L++  
Sbjct: 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE 343

Query: 198 NQFS----GMFLPVYNLSSLEMIYLHDNRLNGNLPPVIG--AKLPNLRKIVIALNNFTGP 251
           N                 SL+ + L  N L  ++         L NL  + I+ N F  P
Sbjct: 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-P 401

Query: 252 LPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGIS 311
           +PDS         L LS      + +      +    L   D ++     N+      + 
Sbjct: 402 MPDSCQWPEKMRFLNLSSTGI--RVVKTCIPQT----LEVLDVSN----NNLDSFSLFLP 451

Query: 312 NLVNLD-------SLATDS-LKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYN 358
            L  L        +L   S    +  + +S N L      +   L+ L  + L+ 
Sbjct: 452 RLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT 506

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 38/246 (15%), Positives = 90/246 (36%), Gaps = 31/246 (12%)

Query: 52  SLTNSVNLCEWTGVTCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTN 111
           + + S  + E   V   ++R ++I    +  ++      L +++++ + N+     +P +
Sbjct: 270 NPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCS 328

Query: 112 L--SLRSKLMLFFANRNI--LAGEIPAEIGNLFKLEKL--SFCVIKLTGQLPASIQNLSS 165
               L+S   L  +   +     +  A  G    L+ L  S   ++   +    +  L +
Sbjct: 329 FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN 388

Query: 166 HLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNR--- 222
               D +RN F   +P+S      + +LN+         +      +LE++ + +N    
Sbjct: 389 LTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR--VVKTCIPQTLEVLDVSNNNLDS 445

Query: 223 ------------LNGN----LPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLE 266
                       ++ N    LP    +  P L  + I+ N         F   ++ +++ 
Sbjct: 446 FSLFLPRLQELYISRNKLKTLPD--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIW 503

Query: 267 LSYNQF 272
           L  N +
Sbjct: 504 LHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 9/178 (5%)

Query: 181 PESPGQLRSLFYLNVGGNQFSGMFLPVY--NLSSLEMIYLHDNRLNGNLPPVIGAKLPNL 238
               G L SL YLN+ GN +  + +     NL++L+ + + +      +  +  A L +L
Sbjct: 91  SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL 150

Query: 239 RKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHG 298
            ++ I   +       S  +  +   L L  ++        +   S  + L   D N   
Sbjct: 151 NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210

Query: 299 RQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL 356
            Q +       +        +   + +     D S N L  +L R ++ LS +   + 
Sbjct: 211 FQFSP------LPVDEVSSPMKKLAFRGSVLTDESFNELL-KLLRYILELSEVEFDDC 261

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 66.2 bits (162), Expect = 5e-12
 Identities = 56/296 (18%), Positives = 93/296 (31%), Gaps = 73/296 (24%)

Query: 83  EIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAG------------ 130
           E+P E  N+    +   A + +    P     + ++ +      +               
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84

Query: 131 EIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSL 190
            +P    +   LE L      LT +LP   Q+L S L  D+N       + + P  L   
Sbjct: 85  SLPELPPH---LESLVASCNSLT-ELPELPQSLKS-LLVDNNNLK---ALSDLPPLLEY- 135

Query: 191 FYLNVGGNQFSGMFLP-VYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFT 249
             L V  NQ     LP + N S L++I + +N L   LP       P+L  I    N   
Sbjct: 136 --LGVSNNQLE--KLPELQNSSFLKIIDVDNNSLK-KLPD----LPPSLEFIAAGNNQLE 186

Query: 250 GPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTG 309
             LP+   N      +    N  +                                LP  
Sbjct: 187 E-LPE-LQNLPFLTAIYADNNSLK-------------------------------KLPDL 213

Query: 310 ISNLVNLDSL--------ATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLY 357
             +L ++ +            +L  +  +   +N L   LP L  +L  L + + Y
Sbjct: 214 PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNY 268

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 62/306 (20%), Positives = 106/306 (34%), Gaps = 73/306 (23%)

Query: 69  SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNIL 128
           SL FI   +N  Q E   EL NL  L  +   NNS    +P        L    A  NIL
Sbjct: 174 SLEFIAAGNN--QLEELPELQNLPFLTAIYADNNSLK-KLPDLP---LSLESIVAGNNIL 227

Query: 129 AGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLR 188
             E   E+ NL  L  +      L   LP    +L + L    N       +PE P  L 
Sbjct: 228 --EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEA-LNVRDNYLT---DLPELPQSLT 280

Query: 189 SLFYLNVGGNQFSGMFLPVYNL--------------SSLEMIYLHDNRLNGNLPPVIGAK 234
            L       +  S +   +Y L               SLE + + +N+L   LP +    
Sbjct: 281 FLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP-- 337

Query: 235 LPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQ 294
              L +++ + N+    +P+   N    ++L + YN  R                     
Sbjct: 338 --RLERLIASFNHLAE-VPELPQNL---KQLHVEYNPLR--------------------- 370

Query: 295 NHHGRQQNICYLPTGISNLVNLDSLA-----TDSLKSIEELDLSSNNLSGQLPRLLVNLS 349
                       P    ++ +L   +      +  +++++L + +N L  + P +  ++ 
Sbjct: 371 ----------EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPESVE 419

Query: 350 FLVLLN 355
            L + +
Sbjct: 420 DLRMNS 425

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 57/298 (19%), Positives = 105/298 (35%), Gaps = 48/298 (16%)

Query: 67  CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRN 126
              L  I   +N ++ ++P+   +L   E ++  NN         L     L   +A+ N
Sbjct: 194 LPFLTAIYADNNSLK-KLPDLPLSL---ESIVAGNNIL--EELPELQNLPFLTTIYADNN 247

Query: 127 ILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQ 186
           +L   +P    +L  L         LT  LP   Q+L+  L+   N  +    + E P  
Sbjct: 248 LLK-TLPDLPPSLEALNVRD---NYLT-DLPELPQSLTF-LDVSENIFS---GLSELPPN 298

Query: 187 LRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALN 246
           L    YLN   N+   +        SLE + + +N+L   LP +       L +++ + N
Sbjct: 299 LY---YLNASSNEIRSLC---DLPPSLEELNVSNNKLI-ELPALPP----RLERLIASFN 347

Query: 247 NFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYL 306
           +    +P+   N    ++L + YN                + + D   N      ++  +
Sbjct: 348 HLAE-VPELPQNL---KQLHVEYNPL-------REFPDIPESVEDLRMNS-----HLAEV 391

Query: 307 PTGISNLVNLD------SLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYN 358
           P    NL  L           D  +S+E+L ++S  +             L      +
Sbjct: 392 PELPQNLKQLHVETNPLREFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEH 449

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 46/284 (16%), Positives = 82/284 (28%), Gaps = 74/284 (26%)

Query: 84  IPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLE 143
           I     +   L++ +  +++ +  +P           ++   +      P   G   ++ 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 144 KLSFCVIKLTG------------QLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLF 191
                                   LP    +L   L A  N      ++PE P  L+SL 
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLSSLPELPPHLE-SLVASCNSLT---ELPELPQSLKSLL 117

Query: 192 YLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGP 251
             N      S           LE + + +N+L   LP +       L+ I +  N+    
Sbjct: 118 VDNNNLKALSD------LPPLLEYLGVSNNQLE-KLPEL--QNSSFLKIIDVDNNSLKK- 167

Query: 252 LPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGIS 311
           LPD   +    E +    NQ                                      + 
Sbjct: 168 LPDLPPSL---EFIAAGNNQL-----------------------------------EELP 189

Query: 312 NLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLN 355
            L NL  L          +   +N+L  +LP L ++L  +V  N
Sbjct: 190 ELQNLPFL--------TAIYADNNSLK-KLPDLPLSLESIVAGN 224

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 36/216 (16%), Positives = 69/216 (31%), Gaps = 35/216 (16%)

Query: 69  SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIP--TNLSLR----------- 115
           SL  +N+ DN +  ++P    +L  L+      +  S   P    L+             
Sbjct: 258 SLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLP 316

Query: 116 SKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNN 175
             L     + N L  E+PA    L +L   SF  +    ++P   QNL   L  + N   
Sbjct: 317 PSLEELNVSNNKLI-ELPALPPRLERLI-ASFNHLA---EVPELPQNLKQ-LHVEYNPLR 370

Query: 176 FGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKL 235
              + P+ P  +  L   +                 +L+ +++  N L    P +     
Sbjct: 371 ---EFPDIPESVEDLRMNSHLAEVPE-------LPQNLKQLHVETNPLR-EFPDIPE--- 416

Query: 236 PNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQ 271
            ++  + +       P   +       E     ++ 
Sbjct: 417 -SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 22/157 (14%)

Query: 69  SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNIL 128
           SL  +N+++N +  E+P     L   E+LI + N  +  +P        L       N L
Sbjct: 318 SLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPELPQ---NLKQLHVEYNPL 369

Query: 129 AGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLR 188
             E P    ++  L   S        ++P   QNL   L  ++N      + P+ P  + 
Sbjct: 370 R-EFPDIPESVEDLRMNSHL-----AEVPELPQNLK-QLHVETNPLR---EFPDIPESVE 419

Query: 189 SLFYLNVGGNQFSGMF-LPVYNLSSLEMIYLHDNRLN 224
               L +   +    +         LE      +  +
Sbjct: 420 ---DLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.0 bits (161), Expect = 9e-12
 Identities = 39/297 (13%), Positives = 86/297 (28%), Gaps = 56/297 (18%)

Query: 69  SLRFINIADNGVQG-EIPNELGNLVRLEKLILANNSFSGTIP---TNLSLRSKLMLFFAN 124
           +L  ++++ N ++   +    G L  L+ +  ++N            L  ++      A 
Sbjct: 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183

Query: 125 RNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESP 184
            ++ +         +     +   ++ ++G       N  +     +  N        S 
Sbjct: 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSG-------NGWTVDITGNFSNAISKSQAFSL 236

Query: 185 GQLRSLFYLNVGGNQFSGM---FLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKI 241
                +     G +               SS+  + L    +  +L   +   L +L+ +
Sbjct: 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVL 295

Query: 242 VIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQ 301
            +A N       ++F    N + L LSYN                               
Sbjct: 296 NLAYNKINKIADEAFYGLDNLQVLNLSYNL------------------------------ 325

Query: 302 NICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYN 358
                      L  L S     L  +  +DL  N+++    +    L  L  L+L +
Sbjct: 326 -----------LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.1 bits (156), Expect = 4e-11
 Identities = 51/302 (16%), Positives = 91/302 (30%), Gaps = 33/302 (10%)

Query: 90  NLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEI-GNLFKLEKLSFC 148
            L   E+L+L+ N       ++     +L L           I  E   NL  L  L   
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 149 VIKLTGQLPASIQNLSS--HLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLP 206
             K+    P + Q L     L       +           L++L  L++  NQ   ++L 
Sbjct: 82  SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141

Query: 207 VY--NLSSLEMIYLHDNRLNGNLPPVI-GAKLPNLRKIVIALNNFTGPLPDSFSNASNRE 263
                L+SL+ I    N++       +   +   L    +A N+    +   +    N  
Sbjct: 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201

Query: 264 R-LELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATD 322
           R + L      G         ++S  ++           +I     G  N+ + D     
Sbjct: 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261

Query: 323 S--------------------------LKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL 356
                                      LK ++ L+L+ N ++         L  L +LNL
Sbjct: 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321

Query: 357 YN 358
             
Sbjct: 322 SY 323

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 58.7 bits (142), Expect = 2e-09
 Identities = 50/321 (15%), Positives = 110/321 (34%), Gaps = 47/321 (14%)

Query: 63  TGVTCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFF 122
            G+  +S+R ++++   V          L  L+ L LA N  +            L +  
Sbjct: 261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLN 320

Query: 123 ANRNILAGEIPAEI-GNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIP 181
            + N+L GE+ +     L K+  +      +      + + L      D   N       
Sbjct: 321 LSYNLL-GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL----- 374

Query: 182 ESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKI 241
            +   + S+  + + GN+   +        +  +I+L +NRL          ++P+L+ +
Sbjct: 375 TTIHFIPSIPDIFLSGNKLVTLP---KINLTANLIHLSENRLENLDILYFLLRVPHLQIL 431

Query: 242 VIALNNFTG-PLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQ 300
           ++  N F+      + S   + E+L L  N  +                           
Sbjct: 432 ILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ--------------------------- 464

Query: 301 QNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYNHF 360
                    ++    L     + L  ++ L L+ N L+   P +  +L+ L  L+L ++ 
Sbjct: 465 ---------LAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR 515

Query: 361 DGEVPTKGVFNNKTRISLAGN 381
              +    +  N   + ++ N
Sbjct: 516 LTVLSHNDLPANLEILDISRN 536

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.0 bits (130), Expect = 5e-08
 Identities = 60/323 (18%), Positives = 122/323 (37%), Gaps = 41/323 (12%)

Query: 69  SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNIL 128
            L+ +N+A N +          L  L+ L L+ N       +N     K+      +N +
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350

Query: 129 AGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLR 188
           A         L KL+ L      LT     +I  + S  +   + N     +   P    
Sbjct: 351 AIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNK----LVTLPKINL 401

Query: 189 SLFYLNVGGNQFSGM--FLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALN 246
           +   +++  N+   +     +  +  L+++ L+ NR +        ++ P+L ++ +  N
Sbjct: 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461

Query: 247 NF-----TGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYS--QRLNDDDQNHHGR 299
                  T    D F   S+ + L L++N     S+     +  +  + L+         
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLN--SLPPGVFSHLTALRGLS--------- 510

Query: 300 QQNICYLPTGISNLVNLDSLATDSLK-SIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYN 358
                     +++   L  L+ + L  ++E LD+S N L    P + V+LS L + +   
Sbjct: 511 ----------LNSN-RLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKF 559

Query: 359 HFDGEVPTKGVFNNKTRISLAGN 381
             + E+ T   + N T +++AG 
Sbjct: 560 ICECELSTFINWLNHTNVTIAGP 582

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 30/191 (15%), Positives = 49/191 (25%), Gaps = 43/191 (22%)

Query: 184 PGQLRSLFYLNVGGNQFS----GMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLR 239
           P  L +   L +  N         F     L  L+++ L        +       LPNLR
Sbjct: 20  PQVLNTTERLLLSFNYIRTVTASSF---PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLR 76

Query: 240 KIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGR 299
            + +  +      PD+F    +   L L +       +                      
Sbjct: 77  ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY------------------ 118

Query: 300 QQNICYLPTGISNLVNLD-----------SLATDSLKSIEELDLSSNNLSGQLPRLLVNL 348
                     +  L  LD             +   L S++ +D SSN +       L  L
Sbjct: 119 -------FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171

Query: 349 SFLVLLNLYNH 359
               L      
Sbjct: 172 QGKTLSFFSLA 182

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 55/298 (18%), Positives = 108/298 (36%), Gaps = 37/298 (12%)

Query: 69  SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNIL 128
           +L  +   +N +    P  LG L  L++L L  N         L+  + L       N +
Sbjct: 200 NLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQI 255

Query: 129 AGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLR 188
           +   P  +  L KL +L     +++    + +  L++    + N N      P     L+
Sbjct: 256 SNLAP--LSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISPI--SNLK 309

Query: 189 SLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNF 248
           +L YL +  N  S    PV +L+ L+ ++ ++N+++ ++  +  A L N+  +    N  
Sbjct: 310 NLTYLTLYFNNISD-ISPVSSLTKLQRLFFYNNKVS-DVSSL--ANLTNINWLSAGHNQI 365

Query: 249 TGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPT 308
           +   P   +N +   +L L+   +    +   A  S    + +               P 
Sbjct: 366 SDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--------APA 415

Query: 309 GISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVP 365
            IS+  +             E D++ N  S     +    S  V +      F G V 
Sbjct: 416 TISDGGSY-----------TEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.8 bits (156), Expect = 3e-11
 Identities = 63/303 (20%), Positives = 122/303 (40%), Gaps = 40/303 (13%)

Query: 67  CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRN 126
             +L  IN ++N +    P  L NL +L  +++ NN  +   P  L+  + L       N
Sbjct: 67  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 122

Query: 127 ILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQ 186
            +    P  + NL  L +L      ++    +++  L+S L+  S  N      P     
Sbjct: 123 QITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTS-LQQLSFGNQVTDLKPL--AN 175

Query: 187 LRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALN 246
           L +L  L++  N+ S     +  L++LE +   +N+++ ++ P+    L NL ++ +  N
Sbjct: 176 LTTLERLDISSNKVSD-ISVLAKLTNLESLIATNNQIS-DITPL--GILTNLDELSLNGN 231

Query: 247 NFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYL 306
                   + ++ +N   L+L+ NQ    +           +L  +          I  +
Sbjct: 232 QLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN---------QISNI 280

Query: 307 PTGISNLVNLDSL-----------ATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLN 355
              ++ L  L +L              +LK++  L L  NN+S   P  + +L+ L  L 
Sbjct: 281 S-PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 337

Query: 356 LYN 358
            YN
Sbjct: 338 FYN 340

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.4 bits (155), Expect = 3e-11
 Identities = 57/283 (20%), Positives = 106/283 (37%), Gaps = 57/283 (20%)

Query: 87  ELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS 146
            L NL  LE+L +++N  S    + L+  + L    A  N ++   P  +G L  L++LS
Sbjct: 172 PLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELS 227

Query: 147 FCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLP 206
               +L      ++ +L++  + D   N      P     L  L  L +G NQ S    P
Sbjct: 228 LNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISP 282

Query: 207 VYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLE 266
           +  L++L  + L++N+L  ++ P+  + L NL  + +  NN +   P   S+ +  +RL 
Sbjct: 283 LAGLTALTNLELNENQLE-DISPI--SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 337

Query: 267 LSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSL------- 319
              N+                                    + ++NL N++ L       
Sbjct: 338 FYNNKVSD--------------------------------VSSLANLTNINWLSAGHNQI 365

Query: 320 ----ATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYN 358
                  +L  I +L L+    +        N+S    +    
Sbjct: 366 SDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 408

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.4 bits (129), Expect = 6e-08
 Identities = 55/284 (19%), Positives = 106/284 (37%), Gaps = 64/284 (22%)

Query: 88  LGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF 147
              L    K +L   + + T+     L     L      I   +    +  L  L +++F
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVSQT-DLDQVTTLQADRLGI---KSIDGVEYLNNLTQINF 75

Query: 148 CVIKLTGQLPASIQNLSS--HLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL 205
              +LT   P  ++NL+    +  ++N+             L +L  L +  NQ + +  
Sbjct: 76  SNNQLTDITP--LKNLTKLVDILMNNNQI----ADITPLANLTNLTGLTLFNNQITDID- 128

Query: 206 PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERL 265
           P+ NL++L  + L  N ++ ++  +  + L +L+++    N  T   P   +N +  ERL
Sbjct: 129 PLKNLTNLNRLELSSNTIS-DISAL--SGLTSLQQLSFG-NQVTDLKP--LANLTTLERL 182

Query: 266 ELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSL------ 319
           ++S N+                                    + ++ L NL+SL      
Sbjct: 183 DISSNKVSD--------------------------------ISVLAKLTNLESLIATNNQ 210

Query: 320 -----ATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYN 358
                    L +++EL L+ N L       L +L+ L  L+L N
Sbjct: 211 ISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 252

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 37/209 (17%), Positives = 71/209 (33%), Gaps = 13/209 (6%)

Query: 67  CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRN 126
              L  + +  N +    P  L  L  L  L L  N      P  +S    L       N
Sbjct: 264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN 319

Query: 127 ILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQ 186
            ++   P  + +L KL++L F   K++    +S+ NL++     +  N      P +   
Sbjct: 320 NISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTPLA--N 373

Query: 187 LRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALN 246
           L  +  L +    ++    PV   +++ +     N     + P   +   +  +  I  N
Sbjct: 374 LTRITQLGLNDQAWTN--APVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWN 431

Query: 247 NFTGPLPDSFSNASNRERLELSYNQFRGK 275
             +     S++  S    +      F G 
Sbjct: 432 LPSYTNEVSYTF-SQPVTIGKGTTTFSGT 459

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 42/276 (15%), Positives = 88/276 (31%), Gaps = 32/276 (11%)

Query: 84  IPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLE 143
           I     N  R +   + ++S    + +       +     + N L+    A++    KLE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 144 KLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGM 203
            L+     L       +++LS+    D N N       +      S+  L+   N  S  
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-- 112

Query: 204 FLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTG-PLPDSFSNASNR 262
            +        + IYL +N++   L  +       ++ + + LN        +  +++   
Sbjct: 113 RVSCSRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 263 ERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATD 322
           E L L YN      +      +  + L D   N       + ++     +   +      
Sbjct: 172 EHLNLQYNFI--YDVKGQVVFAKLKTL-DLSSN------KLAFMGPEFQSAAGV------ 216

Query: 323 SLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYN 358
                  + L +N L   + + L     L   +L  
Sbjct: 217 -----TWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 40/293 (13%), Positives = 86/293 (29%), Gaps = 63/293 (21%)

Query: 69  SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNIL 128
           +++ ++++ N +      +L    +LE L L++N          SL +   L   N  + 
Sbjct: 35  NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYV- 92

Query: 129 AGEIPAEIGNLFKLEKLSFCVIKLTGQLPASI-QNLSS-HLEADSNRNNFGGKIPESPGQ 186
                 E+     +E L      ++ ++  S  Q   + +L      N          G 
Sbjct: 93  -----QELLVGPSIETLHAANNNIS-RVSCSRGQGKKNIYL----ANNKITMLRDLDEGC 142

Query: 187 LRSLFYLNVGGNQFSGMFLP--VYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIA 244
              + YL++  N+   +       +  +LE + L  N +  ++          L+ + ++
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKG--QVVFAKLKTLDLS 199

Query: 245 LNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNIC 304
            N     +   F +A+    + L  N+                                 
Sbjct: 200 SNKLAF-MGPEFQSAAGVTWISLRNNKLV------------------------------- 227

Query: 305 YLPTGISNLVNLDSLATDSLKSIEELDLSSNNLS-GQLPRLLVNLSFLVLLNL 356
            +   +    NL           E  DL  N    G L         +  +  
Sbjct: 228 LIEKALRFSQNL-----------EHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 28/175 (16%), Positives = 59/175 (33%), Gaps = 6/175 (3%)

Query: 69  SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSG-TIPTNLSLRSKLMLFFANRNI 127
             + I +A+N +      + G   R++ L L  N           +    L       N 
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180

Query: 128 LAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQL 187
           +  ++  ++    KL+ L     KL   +    Q+ +  +   S RNN    I ++    
Sbjct: 181 IY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAG-VTWISLRNNKLVLIEKALRFS 236

Query: 188 RSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNG-NLPPVIGAKLPNLRKI 241
           ++L + ++ GN F    L  +   +  +  +    +            +P L   
Sbjct: 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 60/316 (18%), Positives = 104/316 (32%), Gaps = 67/316 (21%)

Query: 68  ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNL-----SLRSKLMLFF 122
              R +++  N ++    +E  +   LE+L L  N  S  +         +LR+ L L  
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRT-LGL-- 87

Query: 123 ANRNILAGEIPAEI-GNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIP 181
              N L   IP  +   L  L KL                ++S          N    + 
Sbjct: 88  -RSNRLK-LIPLGVFTGLSNLTKL----------------DIS---------ENKIVILL 120

Query: 182 ESP-GQLRSLFYLNVGGNQFS----GMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLP 236
           +     L +L  L VG N         F     L+SLE + L    L  ++P    + L 
Sbjct: 121 DYMFQDLYNLKSLEVGDNDLVYISHRAF---SGLNSLEQLTLEKCNLT-SIPTEALSHLH 176

Query: 237 NLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNH 296
            L  + +   N       SF      + LE+S+  +   ++  +     +          
Sbjct: 177 GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL-DTMTPNCLYGLNLTSLSITHC- 234

Query: 297 HGRQQNICYLPTG-ISNLVNLDSL-------------ATDSLKSIEELDLSSNNLSGQLP 342
                N+  +P   + +LV L  L                 L  ++E+ L    L+   P
Sbjct: 235 -----NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP 289

Query: 343 RLLVNLSFLVLLNLYN 358
                L++L +LN+  
Sbjct: 290 YAFRGLNYLRVLNVSG 305

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 59.7 bits (145), Expect = 6e-10
 Identities = 45/213 (21%), Positives = 75/213 (35%), Gaps = 16/213 (7%)

Query: 69  SLRFINIADNGVQGEIPNE-LGNLVRLEKLILANNSFSGTIPTNL--SLRSKLMLFFANR 125
           +L+ + + DN +   I +     L  LE+L L   + + +IPT     L   ++L   + 
Sbjct: 129 NLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHL 186

Query: 126 NILAGEIPAEI-GNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESP 184
           NI    I       L++L+ L          +  +     +         N       + 
Sbjct: 187 NI--NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV 244

Query: 185 GQLRSLFYLNVGGNQFS----GMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRK 240
             L  L +LN+  N  S     M    + L  L+ I L   +L   + P     L  LR 
Sbjct: 245 RHLVYLRFLNLSYNPISTIEGSML---HELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRV 300

Query: 241 IVIALNNFTGPLPDSFSNASNRERLELSYNQFR 273
           + ++ N  T      F +  N E L L  N   
Sbjct: 301 LNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 44/277 (15%), Positives = 87/277 (31%), Gaps = 55/277 (19%)

Query: 69  SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNL--SLRSKLMLFFANRN 126
           +L  ++I++N +   +     +L  L+ L + +N     I       L S   L     N
Sbjct: 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCN 163

Query: 127 ILAGEIPAEI-GNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPG 185
           +    IP E   +L  L  L    + +      S + L      + +   +   +  +  
Sbjct: 164 L--TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL 221

Query: 186 QLRSLFYLNVGGNQFS----GMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKI 241
              +L  L++     +           +L  L  + L  N ++  +   +  +L  L++I
Sbjct: 222 YGLNLTSLSITHCNLTAVPYLAVR---HLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEI 277

Query: 242 VIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQ 301
            +         P +F   +    L +S NQ                              
Sbjct: 278 QLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ------------------------------ 307

Query: 302 NICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLS 338
                      L  L+     S+ ++E L L SN L+
Sbjct: 308 -----------LTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 45/207 (21%), Positives = 67/207 (32%), Gaps = 55/207 (26%)

Query: 156 LPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFS----GMFLPVYNLS 211
           +P   + L      D  +N       +       L  L +  N  S    G F    NL 
Sbjct: 30  IPTETRLL------DLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF---NNLF 80

Query: 212 SLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQ 271
           +L  + L  NRL   +P  +   L NL K+ I+ N     L   F +  N + LE+  N 
Sbjct: 81  NLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND 139

Query: 272 FRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELD 331
                                                    LV +   A   L S+E+L 
Sbjct: 140 -----------------------------------------LVYISHRAFSGLNSLEQLT 158

Query: 332 LSSNNLSGQLPRLLVNLSFLVLLNLYN 358
           L   NL+      L +L  L++L L +
Sbjct: 159 LEKCNLTSIPTEALSHLHGLIVLRLRH 185

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.4 bits (149), Expect = 2e-10
 Identities = 41/276 (14%), Positives = 88/276 (31%), Gaps = 32/276 (11%)

Query: 84  IPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLE 143
           I     N  R +   + ++S    + +       +     + N L+    A++    KLE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 144 KLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGM 203
            L+     L       +++LS+    D N N       +      S+  L+   N  S  
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-- 112

Query: 204 FLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTG-PLPDSFSNASNR 262
            +        + IYL +N++   L  +       ++ + + LN        +  +++   
Sbjct: 113 RVSCSRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 263 ERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATD 322
           E L L YN      +      +  + L+    N       + ++     +   +      
Sbjct: 172 EHLNLQYNFI--YDVKGQVVFAKLKTLDLSS-N------KLAFMGPEFQSAAGV------ 216

Query: 323 SLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYN 358
                  + L +N L   + + L     L   +L  
Sbjct: 217 -----TWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.4 bits (136), Expect = 7e-09
 Identities = 29/290 (10%), Positives = 73/290 (25%), Gaps = 41/290 (14%)

Query: 69  SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNIL 128
             + I +A+N +      + G   R++ L L  N                        I 
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-----------------------EID 157

Query: 129 AGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLR 188
                    +   LE L+     +   +   +   +     D + N     +        
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAA 214

Query: 189 SLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNF 248
            + ++++  N+   +   +    +LE   L  N  +        +K   ++ +  A    
Sbjct: 215 GVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV--AKQTV 272

Query: 249 TGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPT 308
                 +    +                        ++ RL    +  H        L +
Sbjct: 273 KKLTGQNEEECTVPTLGHYGAYCCE------DLPAPFADRLIALKRKEHA-------LLS 319

Query: 309 GISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYN 358
           G  +         ++     E+D         + ++ +     + L    
Sbjct: 320 GQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKK 369

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.0 bits (135), Expect = 1e-08
 Identities = 41/292 (14%), Positives = 85/292 (29%), Gaps = 61/292 (20%)

Query: 69  SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNIL 128
           +++ ++++ N +      +L    +LE L L++N          SL S L     N N +
Sbjct: 35  NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETLDLESL-STLRTLDLNNNYV 92

Query: 129 AGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSS-HLEADSNRNNFGGKIPESPGQL 187
                 E+     +E L      ++    +  Q   + +L      N          G  
Sbjct: 93  -----QELLVGPSIETLHAANNNISRVSCSRGQGKKNIYL----ANNKITMLRDLDEGCR 143

Query: 188 RSLFYLNVGGNQFSGMFLP--VYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIAL 245
             + YL++  N+   +       +  +LE + L  N +  ++          L+ + ++ 
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKG--QVVFAKLKTLDLSS 200

Query: 246 NNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICY 305
           N     +   F +A+    + L  N+                                  
Sbjct: 201 NKLAF-MGPEFQSAAGVTWISLRNNKLV-------------------------------L 228

Query: 306 LPTGISNLVNLDSLATDSLKSIEELDLSSNNLS-GQLPRLLVNLSFLVLLNL 356
           +   +    NL           E  DL  N    G L         +  +  
Sbjct: 229 IEKALRFSQNL-----------EHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 58.9 bits (143), Expect = 7e-10
 Identities = 51/315 (16%), Positives = 103/315 (32%), Gaps = 62/315 (19%)

Query: 68  ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNI 127
                +++ +N +      +  NL  L  LIL NN  S   P   +   KL   + ++N 
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 128 LAGEIPAEIGNLFK-LEKLSFCVIKLTGQLPASIQNLSS--HLEADSNRNNFGGKIPESP 184
           L  E+P     + K L++L     ++T    +    L+    +E  +N     G    + 
Sbjct: 112 LK-ELPE---KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167

Query: 185 GQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIA 244
             ++ L Y+ +     +   +P     SL  ++L  N++   +       L NL K+ ++
Sbjct: 168 QGMKKLSYIRIADTNITT--IPQGLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLS 224

Query: 245 LNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNIC 304
            N+ +     S +N  +   L L+ N+                               + 
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNK-------------------------------LV 253

Query: 305 YLPTGISNLVNLDSL-------------------ATDSLKSIEELDLSSNNLSGQL--PR 343
            +P G+++   +  +                         S   + L SN +      P 
Sbjct: 254 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 313

Query: 344 LLVNLSFLVLLNLYN 358
               +     + L N
Sbjct: 314 TFRCVYVRAAVQLGN 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 36/214 (16%), Positives = 72/214 (33%), Gaps = 42/214 (19%)

Query: 69  SLRFINIADNGVQ-GEIPNE-LGNLVRLEKLILANNSFSGTIPTNL--SLRSKLMLFFAN 124
            +  + +  N ++   I N     + +L  + +A+ + + TIP  L  SL     L    
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTE---LHLDG 201

Query: 125 RNILAGEIPAEI-GNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPES 183
             I   ++ A     L  L KL      L+    +++                      S
Sbjct: 202 NKI--TKVDAASLKGLNNLAKLG-----LSFNSISAVD-------------------NGS 235

Query: 184 PGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRL-----NGNLPPVIGAKLPNL 238
                 L  L++  N+   +   + +   ++++YLH+N +     N   PP    K  + 
Sbjct: 236 LANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY 295

Query: 239 RKIVIALNNFTGPL--PDSFSNASNRERLELSYN 270
             + +  N        P +F     R  ++L   
Sbjct: 296 SGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 44/191 (23%), Positives = 73/191 (38%), Gaps = 32/191 (16%)

Query: 187 LRSLFYLNVGGNQFS----GMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIV 242
           L SL  L +  N  +    G F     LS L  ++L +N +  ++P     ++P+L ++ 
Sbjct: 122 LASLNTLELFDNWLTVIPSGAF---EYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLD 177

Query: 243 IA-LNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQ 301
           +  L         +F    N + L L     +   +         + L +   NH     
Sbjct: 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIK--DMPNLTPLVGLEEL-EMSGNH----- 229

Query: 302 NICYLPTG-ISNLVNLDSL-------------ATDSLKSIEELDLSSNNLSGQLPRLLVN 347
               +  G    L +L  L             A D L S+ EL+L+ NNLS     L   
Sbjct: 230 -FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288

Query: 348 LSFLVLLNLYN 358
           L +LV L+L++
Sbjct: 289 LRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.1 bits (120), Expect = 8e-07
 Identities = 47/217 (21%), Positives = 82/217 (37%), Gaps = 23/217 (10%)

Query: 68  ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIP----TNLSLRSKLMLFFA 123
           ++ R++N+ +N +Q    +   +L  LE L L  NS    I       L+  + L L   
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLEL--- 130

Query: 124 NRNILAGEIPAEI-GNLFKLEKL--SFCVIKLTGQLPASI-QNLSSHLEADSNRNNFGGK 179
             N L   IP+     L KL +L      I+    +P+     + S +  D         
Sbjct: 131 FDNWLT-VIPSGAFEYLSKLRELWLRNNPIE---SIPSYAFNRVPSLMRLDLGELKKLEY 186

Query: 180 IPESP-GQLRSLFYLNVGGNQFS--GMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLP 236
           I E     L +L YLN+G               L  LE + +  N     + P     L 
Sbjct: 187 ISEGAFEGLFNLKYLNLGMCNIKDMPNLT---PLVGLEELEMSGNHFP-EIRPGSFHGLS 242

Query: 237 NLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFR 273
           +L+K+ +  +  +    ++F   ++   L L++N   
Sbjct: 243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 46/213 (21%), Positives = 82/213 (38%), Gaps = 41/213 (19%)

Query: 69  SLRFINIADNGVQGEIPNE-LGNLVRLEKLILANNSFSGTIPTNL--SLRSKLMLFFANR 125
           SL  + + DN +   IP+     L +L +L L NN    +IP+     + S + L     
Sbjct: 124 SLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGEL 181

Query: 126 NILAGEIPAEI-GNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESP 184
             L   I       LF L+ L+  +  +       + NL+                    
Sbjct: 182 KKLE-YISEGAFEGLFNLKYLNLGMCNIK-----DMPNLTP------------------- 216

Query: 185 GQLRSLFYLNVGGNQFS----GMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRK 240
             L  L  L + GN F     G F   + LSSL+ +++ +++++  +       L +L +
Sbjct: 217 --LVGLEELEMSGNHFPEIRPGSF---HGLSSLKKLWVMNSQVS-LIERNAFDGLASLVE 270

Query: 241 IVIALNNFTGPLPDSFSNASNRERLELSYNQFR 273
           + +A NN +    D F+       L L +N + 
Sbjct: 271 LNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 43/287 (14%), Positives = 84/287 (29%), Gaps = 32/287 (11%)

Query: 94  LEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEI-GNLFKLEKLSFCVIKL 152
           +  + L+ NS +    T+ S    L      +      I       L  L  L     + 
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 153 TGQLPASI-QNLSS--HLEADSNRNNFGGKIPESP-GQLRSLFYLNVGGNQFS-----GM 203
             QL       L++   L       + G  +  +    L SL  L +  N          
Sbjct: 92  L-QLETGAFNGLANLEVLTLTQCNLD-GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 204 FLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIAL----------NNFTGPLP 253
           F    N+    ++ L  N++  ++              ++ L                  
Sbjct: 150 F---LNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205

Query: 254 DSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNL 313
            +    ++   L+LS N F+     R        ++    Q+             G +N 
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKI----QSLILSNSYNMGSSFGHTNF 261

Query: 314 VNLDSLATDSLK--SIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYN 358
            + D+     L+   ++  DLS + +   L  +  + + L  L L  
Sbjct: 262 KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ 308

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 50.1 bits (120), Expect = 7e-07
 Identities = 48/304 (15%), Positives = 91/304 (29%), Gaps = 67/304 (22%)

Query: 69  SLRFINIADNGVQGEIPNEL-GNLVRLEKLILANN-----------SFSGTIPTNLSLRS 116
           SL  + + DN ++   P     N+ R   L L  N           +F G   T L L S
Sbjct: 130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189

Query: 117 KLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNL--SSHLEADSNRN 174
            + L   N   L  E          +  L          +     +    + +++    N
Sbjct: 190 -ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248

Query: 175 NFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAK 234
           ++           +        G +           S ++   L  +++   L   + + 
Sbjct: 249 SYNMGSSFGHTNFKDPDNFTFKGLE----------ASGVKTCDLSKSKIF-ALLKSVFSH 297

Query: 235 LPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQ 294
             +L ++ +A N       ++F   ++  +L LS N                        
Sbjct: 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF----------------------- 334

Query: 295 NHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLL 354
                             L ++DS   ++L  +E LDLS N++     +  + L  L  L
Sbjct: 335 ------------------LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL 376

Query: 355 NLYN 358
            L  
Sbjct: 377 ALDT 380

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 25/187 (13%), Positives = 49/187 (26%), Gaps = 51/187 (27%)

Query: 192 YLNVGGNQFS----GMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNN 247
           Y+++  N  +      F     L  L+ + +        +       L +L  + +  N 
Sbjct: 34  YVDLSLNSIAELNETSF---SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 248 FTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLP 307
           F      +F+  +N E L L+     G  +                              
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVL-----------------------------S 121

Query: 308 TGI-SNLVNLDSL--------------ATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLV 352
                 L +L+ L                 +++    LDL+ N +       L+N     
Sbjct: 122 GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKH 181

Query: 353 LLNLYNH 359
              L   
Sbjct: 182 FTLLRLS 188

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.0 bits (104), Expect = 7e-05
 Identities = 31/208 (14%), Positives = 66/208 (31%), Gaps = 25/208 (12%)

Query: 74  NIADNGVQGEIPNELGNLVRLEKLILANNSF----SGTIPTNLSLRSKLMLFFANRNILA 129
           ++ +  +  E          +  L L+ N F    +      ++      L  +N   + 
Sbjct: 194 DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253

Query: 130 GEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRS 189
                   N    +  +F      G   + ++        D +++     +         
Sbjct: 254 SSFGH--TNFKDPDNFTF-----KGLEASGVKTC------DLSKSKIFALLKSVFSHFTD 300

Query: 190 LFYLNVGGNQFS----GMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIAL 245
           L  L +  N+ +      F   + L+ L  + L  N L G++   +   L  L  + ++ 
Sbjct: 301 LEQLTLAQNEINKIDDNAF---WGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSY 356

Query: 246 NNFTGPLPDSFSNASNRERLELSYNQFR 273
           N+       SF    N + L L  NQ +
Sbjct: 357 NHIRALGDQSFLGLPNLKELALDTNQLK 384

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 55.4 bits (134), Expect = 8e-09
 Identities = 46/211 (21%), Positives = 80/211 (37%), Gaps = 7/211 (3%)

Query: 68  ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLR--SKLMLFFANR 125
           +S   + +  N +Q         L +L KL L++N  S     + S    + L     + 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 126 NILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASI-QNLSSHLEADSNRNNFGGKIPESP 184
           N +   + +    L +LE L F    L      S+  +L + +  D +  +         
Sbjct: 88  NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 185 GQLRSLFYLNVGGNQFSGMFLPV--YNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIV 242
             L SL  L + GN F   FLP     L +L  + L   +L   L P     L +L+ + 
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLN 205

Query: 243 IALNNFTGPLPDSFSNASNRERLELSYNQFR 273
           ++ NNF       +   ++ + L+ S N   
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 46/255 (18%), Positives = 80/255 (31%), Gaps = 57/255 (22%)

Query: 138 NLFKLEKL--SFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNV 195
            L +L KL  S   +   G    S    +S    D + N     +  +   L  L +L+ 
Sbjct: 50  KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDF 108

Query: 196 GGNQFS-----GMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNF-T 249
             +         +F    +L +L  + +            I   L +L  + +A N+F  
Sbjct: 109 QHSNLKQMSEFSVF---LSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQE 164

Query: 250 GPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTG 309
             LPD F+   N   L+LS  Q                                      
Sbjct: 165 NFLPDIFTELRNLTFLDLSQCQ-------------------------------------- 186

Query: 310 ISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYNHFDGEVPT--- 366
              L  L   A +SL S++ L++S NN           L+ L +L+   +          
Sbjct: 187 ---LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243

Query: 367 KGVFNNKTRISLAGN 381
           +   ++   ++L  N
Sbjct: 244 QHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 24/175 (13%), Positives = 50/175 (28%), Gaps = 49/175 (28%)

Query: 189 SLFYLNVGGNQFS----GMFLPVYNLSSLEMIYLHDNRLN-GNLPPVIGAKLPNLRKIVI 243
           S   L +  N+      G+F     L+ L  + L  N L+             +L+ + +
Sbjct: 29  SATRLELESNKLQSLPHGVFD---KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85

Query: 244 ALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNI 303
           + N     +  +F      E L+  ++                                 
Sbjct: 86  SFNGVIT-MSSNFLGLEQLEHLDFQHSN-------------------------------- 112

Query: 304 CYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYN 358
                 +  +         SL+++  LD+S  +       +   LS L +L +  
Sbjct: 113 ------LKQMSEFSVF--LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 40/178 (22%), Positives = 68/178 (38%), Gaps = 23/178 (12%)

Query: 186 QLRSLFYLNVGGNQFS----GMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKI 241
            L  L  L + GN       G F     LSSL+ +   +  L  +L       L  L+++
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAF---SGLSSLQKLVAVETNLA-SLENFPIGHLKTLKEL 129

Query: 242 VIALNNFTG-PLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQ 300
            +A N      LP+ FSN +N E L+LS N+   +SI          ++   + +     
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI--QSI-YCTDLRVLHQMPLLNLSLDLSL 186

Query: 301 QNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYN 358
             + ++  G    + L           +EL L +N L      +   L+ L  + L+ 
Sbjct: 187 NPMNFIQPGAFKEIRL-----------KELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 36/176 (20%), Positives = 56/176 (31%), Gaps = 49/176 (27%)

Query: 187 LRSLFYLNVGGNQFS----GMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIV 242
           L  L  L++          G+F     L++L+ +YL DN L   LP      L NL  + 
Sbjct: 104 LGRLHTLHLDRCGLQELGPGLF---RGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLF 159

Query: 243 IALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQN 302
           +  N  +     +F    + +RL L  N+                               
Sbjct: 160 LHGNRISSVPERAFRGLHSLDRLLLHQNR------------------------------- 188

Query: 303 ICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYN 358
                     + ++   A   L  +  L L +NNLS      L  L  L  L L +
Sbjct: 189 ----------VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 45/219 (20%), Positives = 82/219 (37%), Gaps = 25/219 (11%)

Query: 68  ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIP----TNLSLRSKLMLFFA 123
           A+ + I +  N +             L  L L +N  +  I     T L+L  +L L   
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDL--- 87

Query: 124 NRNILAGEIPAEI-GNLFKLEKLSFCVIKLTGQLPASI-QNLSS--HLEADSNRNNFGGK 179
           + N     +       L +L  L      L  +L   + + L++  +L    N       
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ---A 143

Query: 180 IPESP-GQLRSLFYLNVGGNQFS----GMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAK 234
           +P+     L +L +L + GN+ S      F     L SL+ + LH NR+  ++ P     
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFR---GLHSLDRLLLHQNRVA-HVHPHAFRD 199

Query: 235 LPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFR 273
           L  L  + +  NN +    ++ +     + L L+ N + 
Sbjct: 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 36/207 (17%), Positives = 55/207 (26%), Gaps = 54/207 (26%)

Query: 156 LPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFS----GMFLPVYNLS 211
           +PA+ Q +        + N        S    R+L  L +  N  +      F     L+
Sbjct: 30  IPAASQRI------FLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF---TGLA 80

Query: 212 SLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQ 271
            LE + L DN    ++ P     L  L  + +         P  F   +  + L L  N 
Sbjct: 81  LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA 140

Query: 272 FRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELD 331
                                                    L  L       L ++  L 
Sbjct: 141 -----------------------------------------LQALPDDTFRDLGNLTHLF 159

Query: 332 LSSNNLSGQLPRLLVNLSFLVLLNLYN 358
           L  N +S    R    L  L  L L+ 
Sbjct: 160 LHGNRISSVPERAFRGLHSLDRLLLHQ 186

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.7 bits (129), Expect = 3e-08
 Identities = 50/336 (14%), Positives = 84/336 (25%), Gaps = 67/336 (19%)

Query: 43  LHDPLEVTSSLTNSVNL--CEWTGVTCASLRFINIADNGVQGEIPNELGNLVRLEKLILA 100
             DP    SS  N +     E  G   +    +   D         ++   + L++L + 
Sbjct: 17  FSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVR 76

Query: 101 NNSFSGTIPTNLSLR---SKLMLFFANRNILAGEIPAEIGNLF--KLEKLSFCVIKLTGQ 155
                  I          S L         + G  P  +       L  L+   +    +
Sbjct: 77  AARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR 136

Query: 156 ---LPASIQNLSSHLEADSNRNNFGGKIP-ESPGQLRSLFYLNVGGNQFSGMF-----LP 206
              L    Q L   L+  S           E      +L  L++  N   G       L 
Sbjct: 137 DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196

Query: 207 VYNLSSLEMIYLHDNRLNGNLPPVIG---AKLPNLRKIVIALNNFTG-PLPDSFSNASNR 262
                +L+++ L +  +      V     A    L+ + ++ N+        S    S  
Sbjct: 197 PLKFPTLQVLALRNAGME-TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255

Query: 263 ERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATD 322
             L LS+                                              L  +   
Sbjct: 256 NSLNLSFTG--------------------------------------------LKQVPKG 271

Query: 323 SLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYN 358
               +  LDLS N L    P     L  +  L+L  
Sbjct: 272 LPAKLSVLDLSYNRLDR-NPSPD-ELPQVGNLSLKG 305

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 31/184 (16%), Positives = 55/184 (29%), Gaps = 23/184 (12%)

Query: 69  SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNIL 128
            L+ ++IA          ++     L  L L++N   G      +L              
Sbjct: 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL-------------- 195

Query: 129 AGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQ-L 187
               P +   L  L   +  +   +G   A           D + N+             
Sbjct: 196 ---CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252

Query: 188 RSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNN 247
             L  LN+         +P    + L ++ L  NRL+ N  P    +LP +  + +  N 
Sbjct: 253 SQLNSLNLSFTGLKQ--VPKGLPAKLSVLDLSYNRLDRNPSP---DELPQVGNLSLKGNP 307

Query: 248 FTGP 251
           F   
Sbjct: 308 FLDS 311

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.4 bits (131), Expect = 3e-08
 Identities = 43/191 (22%), Positives = 78/191 (40%), Gaps = 32/191 (16%)

Query: 187 LRSLFYLNVGGNQFS----GMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIV 242
           L +L  L +  N+ +    G F     LS L+ ++L +N +  ++P     ++P+LR++ 
Sbjct: 111 LANLNTLELFDNRLTTIPNGAF---VYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLD 166

Query: 243 IALNNFTGPLP-DSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQ 301
           +        +   +F   SN   L L+    R   I           L D   NH     
Sbjct: 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLR--EIPNLTPLIKLDEL-DLSGNH----- 218

Query: 302 NICYLPTGI-SNLVNLDSL-------------ATDSLKSIEELDLSSNNLSGQLPRLLVN 347
            +  +  G    L++L  L             A D+L+S+ E++L+ NNL+     L   
Sbjct: 219 -LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277

Query: 348 LSFLVLLNLYN 358
           L  L  ++L++
Sbjct: 278 LHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 44/185 (23%), Positives = 63/185 (34%), Gaps = 30/185 (16%)

Query: 192 YLNVGGNQFS----GMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNN 247
            LN+  NQ        F    +L  LE++ L  N +   +       L NL  + +  N 
Sbjct: 68  LLNLHENQIQIIKVNSFK---HLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNR 123

Query: 248 FTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYS--QRLNDDDQNHHGRQQNICY 305
            T     +F   S  + L L  N     SI   A       +RL+  +         + Y
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIE--SIPSYAFNRIPSLRRLDLGELKR------LSY 175

Query: 306 LPTGI-SNLVNLDSL-----------ATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVL 353
           +  G    L NL  L               L  ++ELDLS N+LS   P     L  L  
Sbjct: 176 ISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235

Query: 354 LNLYN 358
           L +  
Sbjct: 236 LWMIQ 240

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 48/213 (22%), Positives = 80/213 (37%), Gaps = 41/213 (19%)

Query: 69  SLRFINIADNGVQGEIPNE-LGNLVRLEKLILANNSFSGTIPTNL--SLRSKLMLFFANR 125
           +L  + + DN +   IPN     L +L++L L NN    +IP+     + S   L     
Sbjct: 113 NLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGEL 170

Query: 126 NILAGEIPAEI-GNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESP 184
             L+  I       L  L  L+  +  L       I NL+                    
Sbjct: 171 KRLS-YISEGAFEGLSNLRYLNLAMCNLR-----EIPNLTP------------------- 205

Query: 185 GQLRSLFYLNVGGNQFS----GMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRK 240
             L  L  L++ GN  S    G F     L  L+ +++  +++   +       L +L +
Sbjct: 206 --LIKLDELDLSGNHLSAIRPGSF---QGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVE 259

Query: 241 IVIALNNFTGPLPDSFSNASNRERLELSYNQFR 273
           I +A NN T    D F+   + ER+ L +N + 
Sbjct: 260 INLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 5e-08
 Identities = 56/375 (14%), Positives = 110/375 (29%), Gaps = 109/375 (29%)

Query: 51  SSLTNSVNLCEWTGVTCASLRFINIADNGV----------QGEIPNELGNL-VRLEKLIL 99
           + +   V         C S +     D  +             +   L  L  +++    
Sbjct: 164 TWVALDV---------CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 100 ANNSFSGTIPTNL-SLRSKLMLFFANRN------ILAGEIPAEIGNLFKLEKLSFCVIKL 152
           + +  S  I   + S++++L     ++       +L     A+  N F L     C I L
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS----CKILL 270

Query: 153 TGQLPASIQNLSS----HLEADSNRNNFGGKIPESPGQLRSLF--YLNVGGNQFSGMFLP 206
           T +       LS+    H+  D +          +P +++SL   YL+          LP
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTL------TPDEVKSLLLKYLDCRPQD-----LP 319

Query: 207 V----YNLSSLEMI--YLHD--NRLNG-------NLPPVIGAKLPNL-----RKIVIALN 246
                 N   L +I   + D     +         L  +I + L  L     RK+   L+
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379

Query: 247 NFTGPLPDS----------FSNASNRERLELSYNQFRGKSI---WRSAATSY-------S 286
            F    P S                +  + +  N+    S+       +T          
Sbjct: 380 VF----PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435

Query: 287 QRLNDDDQNHHGR-----QQNICYLPTGISNLVNLDS-----LATDSLKSIEELDLSSNN 336
           +   +++   H            +    +     LD      +    LK+IE  +  +  
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLI-PPYLDQYFYSHIG-HHLKNIEHPERMT-- 491

Query: 337 LSGQLPRLLVNLSFL 351
                  + ++  FL
Sbjct: 492 ---LFRMVFLDFRFL 503

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 5e-04
 Identities = 54/368 (14%), Positives = 97/368 (26%), Gaps = 118/368 (32%)

Query: 4   PSVLQLFSALSLRLWCTT--TTTIINANETDRLALLAIKSQLHDPLEVTSSLTNSVNLC- 60
                 F+     L C    TT       TD L+         D   +T +     +L  
Sbjct: 256 AKAWNAFN-----LSCKILLTTR--FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308

Query: 61  EWTGVTCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLML 120
           ++       L              P E+                  T P  LS+ ++ + 
Sbjct: 309 KYLDCRPQDL--------------PREV----------------LTTNPRRLSIIAESIR 338

Query: 121 FFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNF---- 176
                            + +K         KLT  + +S+      LE    R  F    
Sbjct: 339 DGLATW-----------DNWKHVNCD----KLTTIIESSLNV----LEPAEYRKMFDRLS 379

Query: 177 ----GGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLE------MIYLHDNRLNGN 226
                  IP     L SL + +V  +    +   ++  S +E       I +    L   
Sbjct: 380 VFPPSAHIPT---ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436

Query: 227 LPPVIGAKLPNLRKIVIA---------LNNFTGPLPDS---------FSNASNRERLE-- 266
           +          L + ++           ++   P  D            N  + ER+   
Sbjct: 437 VKL---ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493

Query: 267 ----LSYNQFRGK-----SIWRSAATS---------YSQRLNDDDQNHHGRQQNIC-YLP 307
               L +     K     + W ++ +          Y   + D+D  +      I  +LP
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP 553

Query: 308 TGISNLVN 315
               NL+ 
Sbjct: 554 KIEENLIC 561

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 53.7 bits (129), Expect = 6e-08
 Identities = 52/338 (15%), Positives = 104/338 (30%), Gaps = 33/338 (9%)

Query: 72  FINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLML------FFANR 125
            +++    ++G     L         ++ + +   ++  N+S+ +   L           
Sbjct: 175 LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN 234

Query: 126 NILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLS-----SHLEADSNR---NNFG 177
                   +E+     L  ++   I+ T +    +          +L   +         
Sbjct: 235 CQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDR 294

Query: 178 GKIPESPGQLRSLFYLNVGGNQFSGMFLPVYN-LSSLEMIYLHDNRLNGNLPPVIGAKLP 236
            +   S   L+SL   +V    F      +Y+  + + +  L  +               
Sbjct: 295 EEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPP-SPS 353

Query: 237 NLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA-ATSYSQRLNDDDQN 295
           +   +    N FT  +    S     + L L  N    K+ ++ A  T     L   D +
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL--KNFFKVALMTKNMSSLETLDVS 411

Query: 296 H----HGRQQNICYLPTGISNLV----NLDSLATDSL-KSIEELDLSSNNLSGQLPRLLV 346
                       C     I  L      L       L   ++ LDL +N +   +P+ + 
Sbjct: 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVT 470

Query: 347 NLSFLVLLNLYNHFDGEVPTKGVFNNK---TRISLAGN 381
           +L  L  LN+ ++    VP  GVF+       I L  N
Sbjct: 471 HLQALQELNVASNQLKSVP-DGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.7 bits (103), Expect = 9e-05
 Identities = 43/289 (14%), Positives = 87/289 (30%), Gaps = 35/289 (12%)

Query: 73  INIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSL---RSKLMLFFANRNILA 129
           +N  +        +EL     L  + L +   +      L        +         + 
Sbjct: 230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTIT 289

Query: 130 GEIPAEIGNLFKLEKLSFCVIKLTGQ----LPASIQNLSSHLEADSNRNNFGGKIPES-P 184
             I  E     +    S  +  +  Q       ++ ++ + +       +    I    P
Sbjct: 290 ERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCP 349

Query: 185 GQLRSLFYLNVGGNQFSGMFLPVY-NLSSLEMIYLHDNRLNGNLPPVIG--AKLPNLRKI 241
               S  +LN   N F+         L  L+ + L  N L  N   V      + +L  +
Sbjct: 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETL 408

Query: 242 VIALNNFT-GPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQ 300
            ++LN+        + + A +   L LS N      +  S       ++   D +++   
Sbjct: 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNM-----LTGSVFRCLPPKVKVLDLHNNRIM 463

Query: 301 QNICYLPTGISNLVNLDSL-------------ATDSLKSIEELDLSSNN 336
                +P  +++L  L  L               D L S++ + L  N 
Sbjct: 464 S----IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 44/315 (13%), Positives = 89/315 (28%), Gaps = 26/315 (8%)

Query: 67  CASLRFINIADNGVQGEIPNEL-GNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANR 125
            + LR + ++ N ++  +   +      LE L +++N     I     + S   L  +  
Sbjct: 75  LSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ-NISCC-PMASLRHLDLSFN 131

Query: 126 NILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPG 185
           +     +  E GNL KL  L     K        + +L          +           
Sbjct: 132 DFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESL 191

Query: 186 QLRSLFYLNVGGNQ----FSGMFLPVYNLSSLEMIYLHDNRLN-GNLPPVIGAKLPNLRK 240
           Q+ +   L++  +        + + V  L  L++  +  N  N   L   +         
Sbjct: 192 QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTL 251

Query: 241 IVIALNNFTGPLPDSFSNASNRERLELSYNQFRG---KSIWRSAATSYSQRLNDDDQNHH 297
           + + L +       S           + Y                 +YS+         H
Sbjct: 252 LNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEH 311

Query: 298 GRQQNICYLPTG--------------ISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPR 343
            + Q   +                  IS+   +  +   S  S   L+ + N  +  + +
Sbjct: 312 VKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQ 371

Query: 344 LLVNLSFLVLLNLYN 358
               L  L  L L  
Sbjct: 372 GCSTLKRLQTLILQR 386

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.8 bits (127), Expect = 7e-08
 Identities = 33/182 (18%), Positives = 64/182 (35%), Gaps = 28/182 (15%)

Query: 187 LRSLFYLNVGGNQFS-----GMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKI 241
           L SL +LN+ GN +       +F    +L+ L+++ + +      +     A L  L ++
Sbjct: 123 LSSLTFLNLLGNPYKTLGETSLF---SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179

Query: 242 VIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDD--DQNHHGR 299
            I  ++     P S  +  N   L L   Q                 L +   D      
Sbjct: 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQH--------------ILLLEIFVDVTSSVE 225

Query: 300 QQNICYLPTGISNLVNLDSLATDSLK---SIEELDLSSNNLSGQLPRLLVNLSFLVLLNL 356
              +        +   L +  T+SL    +   + ++  +L  Q+ +LL  +S L+ L  
Sbjct: 226 CLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEF 284

Query: 357 YN 358
             
Sbjct: 285 SR 286

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 48/283 (16%), Positives = 88/283 (31%), Gaps = 59/283 (20%)

Query: 85  PNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFK-LE 143
            ++   L  L  L+L NN  S       S   KL   + ++N L  EIP    NL   L 
Sbjct: 71  KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPP---NLPSSLV 126

Query: 144 KLSFCVIKLTGQLPASIQNLSS--HLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFS 201
           +L     ++          L +   +E   N     G           L YL +   + +
Sbjct: 127 ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG-FEPGAFDGLKLNYLRISEAKLT 185

Query: 202 GMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASN 261
           G  +P     +L  ++L  N++   +      +   L ++ +  N        S S    
Sbjct: 186 G--IPKDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT 242

Query: 262 RERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLAT 321
              L L  N+                               +  +P G+ +L  L     
Sbjct: 243 LRELHLDNNK-------------------------------LSRVPAGLPDLKLL----- 266

Query: 322 DSLKSIEELDLSSNNLSG------QLPRLLVNLSFLVLLNLYN 358
                 + + L +NN++             V  ++   ++L+N
Sbjct: 267 ------QVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 49.6 bits (119), Expect = 8e-07
 Identities = 36/202 (17%), Positives = 61/202 (30%), Gaps = 29/202 (14%)

Query: 173 RNNFGGKIPESP-GQLRSLFYLNVGGNQFS----GMFLPVYNLSSLEMIYLHDNRLNGNL 227
           +NN   ++ +     L+ L+ L +  N+ S      F     L  L+ +Y+  N L   +
Sbjct: 62  QNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFS---PLRKLQKLYISKNHLV-EI 117

Query: 228 PPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQ 287
           PP +     +L ++ I  N         FS   N   +E+  N          A      
Sbjct: 118 PPNL---PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKL 174

Query: 288 RLNDDDQNHHGRQQNICYLPTGI-SNLVNLD----------SLATDSLKSIEELDLSSNN 336
                 +        +  +P  +   L  L                    +  L L  N 
Sbjct: 175 NYLRISEA------KLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228

Query: 337 LSGQLPRLLVNLSFLVLLNLYN 358
           +       L  L  L  L+L N
Sbjct: 229 IRMIENGSLSFLPTLRELHLDN 250

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 50/310 (16%), Positives = 106/310 (34%), Gaps = 36/310 (11%)

Query: 69  SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLR-SKLMLFFANRNI 127
           +++ + +  N ++   P+   N+  L  L+L  N  S ++P  +     KL     + N 
Sbjct: 94  TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNN 152

Query: 128 LAGEIPAEI-GNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQ 186
           L   I  +       L+ L     +LT    + I +L  H     N          +   
Sbjct: 153 LE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF-HANVSYNL-------LSTLAI 203

Query: 187 LRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALN 246
             ++  L+   N  +   +       L ++ L  N L  +   ++    P L ++ ++ N
Sbjct: 204 PIAVEELDASHNSIN--VVRGPVNVELTILKLQHNNLT-DTAWLLN--YPGLVEVDLSYN 258

Query: 247 NFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYL 306
                +   F      ERL +S N+    ++  +        L   D +H     ++ ++
Sbjct: 259 ELEKIMYHPFVKMQRLERLYISNNRLV--AL--NLYGQPIPTLKVLDLSH----NHLLHV 310

Query: 307 PTGISNLVNL----------DSLATDSLKSIEELDLSSNNLSG-QLPRLLVNLSFLVLLN 355
                    L           +L   +  +++ L LS N+     L  L  N++   + +
Sbjct: 311 ERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDD 370

Query: 356 LYNHFDGEVP 365
              H   +  
Sbjct: 371 ADQHCKIDYQ 380

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 49/327 (14%), Positives = 97/327 (29%), Gaps = 39/327 (11%)

Query: 44  HDPLEVTSSLTNSVNLCEWTGVTCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNS 103
               E     +N    C            ++I           E   L   + +   N++
Sbjct: 5   PRQPEYKCIDSNLQYDC--------VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST 56

Query: 104 FSGTIPTN-LSLRSKLMLFFANRNILAGEIPAEI-GNLFKLEKLSFCVIKLTGQLPASIQ 161
               +P   L    ++ L   N   +  EI          ++KL      +    P   Q
Sbjct: 57  MR-KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 114

Query: 162 NLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFS----GMFLPVYNLSSLEMIY 217
           N+         RN+              L  L++  N         F      +SL+ + 
Sbjct: 115 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF---QATTSLQNLQ 171

Query: 218 LHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSI 277
           L  NRL  ++     + +P+L    ++ N  +     + +     E L+ S+N      +
Sbjct: 172 LSSNRLT-HVDL---SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN--VV 220

Query: 278 WRSAATS------YSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELD 331
                            L D     +     +  +    + L  +       ++ +E L 
Sbjct: 221 RGPVNVELTILKLQHNNLTDTAWLLN--YPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278

Query: 332 LSSNNLSGQLPRLLVNLSFLVLLNLYN 358
           +S+N L   L      +  L +L+L +
Sbjct: 279 ISNNRLV-ALNLYGQPIPTLKVLDLSH 304

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 44/265 (16%), Positives = 85/265 (32%), Gaps = 43/265 (16%)

Query: 98  ILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLP 157
           +         I +NL           +          E   L   + ++F    +     
Sbjct: 3   VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 62

Query: 158 ASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFS----GMFLPVYNLSSL 213
           A + +       + N          +     ++  L +G N        +F    N+  L
Sbjct: 63  ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF---QNVPLL 119

Query: 214 EMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFR 273
            ++ L  N L+ +LP  I    P L  + ++ NN      D+F   ++ + L+LS N+  
Sbjct: 120 TVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178

Query: 274 GKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLD----SLAT-DSLKSIE 328
                                             + I +L + +     L+T     ++E
Sbjct: 179 HVD------------------------------LSLIPSLFHANVSYNLLSTLAIPIAVE 208

Query: 329 ELDLSSNNLSGQLPRLLVNLSFLVL 353
           ELD S N+++     + V L+ L L
Sbjct: 209 ELDASHNSINVVRGPVNVELTILKL 233

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.0 bits (122), Expect = 3e-07
 Identities = 35/192 (18%), Positives = 57/192 (29%), Gaps = 29/192 (15%)

Query: 187 LRSLFYLNVGGNQF-----SGMFLPVYNLSSLEMIYL-HDNRLNGNLPPVIGAKLPNLRK 240
              L  + +  N       + +F    NL  L  I +   N L   + P     LPNL+ 
Sbjct: 53  FGDLEKIEISQNDVLEVIEADVF---SNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQY 108

Query: 241 IVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQ 300
           ++I+             ++  +  L++  N     +I R++    S        N     
Sbjct: 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDN-INIHTIERNSFVGLSFESVILWLNK---- 163

Query: 301 QNICYLPTGISNLVNLDSL--------------ATDSLKSIEELDLSSNNLSGQLPRLLV 346
             I  +     N   LD L                        LD+S   +       L 
Sbjct: 164 NGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE 223

Query: 347 NLSFLVLLNLYN 358
           NL  L   + YN
Sbjct: 224 NLKKLRARSTYN 235

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 28/213 (13%), Positives = 51/213 (23%), Gaps = 14/213 (6%)

Query: 68  ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNL--SLRSKLMLFFANR 125
            +   +      ++            LEK+ ++ N     I  ++  +L     +     
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 126 NILAGEIPAEI-GNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESP 184
           N L   I  E   NL  L+ L      +         +    +  D   N     I  + 
Sbjct: 90  NNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148

Query: 185 --GQLRSLFYLNVGGNQFS----GMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNL 238
             G       L +  N         F         E+    +N L   LP  +       
Sbjct: 149 FVGLSFESVILWLNKNGIQEIHNSAF---NGTQLDELNLSDNNNLE-ELPNDVFHGASGP 204

Query: 239 RKIVIALNNFTGPLPDSFSNASNRERLELSYNQ 271
             + I+             N            +
Sbjct: 205 VILDISRTRIHSLPSYGLENLKKLRARSTYNLK 237

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.4 bits (116), Expect = 8e-07
 Identities = 22/188 (11%), Positives = 64/188 (34%), Gaps = 48/188 (25%)

Query: 183 SPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIV 242
           +  Q+ SL Y+ +     + +   +    +++ + +++     N  P+  + L NL ++ 
Sbjct: 39  TEAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHAT-NYNPI--SGLSNLERLR 94

Query: 243 IALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQN 302
           I   + T     + S  ++   L++S++      +                         
Sbjct: 95  IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL------------------------- 129

Query: 303 ICYLPTGISNLVNLDSL------------ATDSLKSIEELDLSSNNLSGQLPRLLVNLSF 350
                T I+ L  ++S+               +L  ++ L++  + +       + +   
Sbjct: 130 -----TKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG--IEDFPK 182

Query: 351 LVLLNLYN 358
           L  L  ++
Sbjct: 183 LNQLYAFS 190

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 42/209 (20%), Positives = 70/209 (33%), Gaps = 53/209 (25%)

Query: 156 LPASIQNLSSHLEADSNRNNFGGKIPE-SPGQLRSLFYLNVGGNQFS----GMFLPVYNL 210
           LP+    L      D + NN      E +P +L +L  L +  N  +      F     +
Sbjct: 37  LPSYTALL------DLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF---VPV 87

Query: 211 SSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYN 270
            +L  + L  N L+  L   + + L  L  +++  N+      ++F + +  ++L LS N
Sbjct: 88  PNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146

Query: 271 QFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEEL 330
           Q                                   P  +  + + + L       +  L
Sbjct: 147 QIS-------------------------------RFPVEL--IKDGNKL-----PKLMLL 168

Query: 331 DLSSNNLSGQLPRLLVNLSFLVLLNLYNH 359
           DLSSN L       L  L   V   LY H
Sbjct: 169 DLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 37/218 (16%), Positives = 65/218 (29%), Gaps = 57/218 (26%)

Query: 156 LPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVY-NLSSLE 214
           LP     L        + N        +      L  LN+   + +   L V   L  L 
Sbjct: 29  LPKDTTIL------HLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQVDGTLPVLG 80

Query: 215 MIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRG 274
            + L  N+L  +LP +    LP L  + ++ N  T     +       + L L  N+   
Sbjct: 81  TLDLSHNQLQ-SLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE--- 135

Query: 275 KSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGI-SNLVNLDSL-------------A 320
                                       +  LP G+ +    L+ L              
Sbjct: 136 ----------------------------LKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167

Query: 321 TDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYN 358
            + L++++ L L  N+L   +P+       L    L+ 
Sbjct: 168 LNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHG 204

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 41/170 (24%), Positives = 65/170 (38%), Gaps = 17/170 (10%)

Query: 108 IPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHL 167
           +P + +    L L   + N+L     A +    +L +L+    +LT +L      L    
Sbjct: 29  LPKDTT---ILHL---SENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLG 80

Query: 168 EADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFS----GMFLPVYNLSSLEMIYLHDNRL 223
             D + N     +P     L +L  L+V  N+ +    G       L  L+ +YL  N L
Sbjct: 81  TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGAL---RGLGELQELYLKGNEL 136

Query: 224 NGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFR 273
              LPP +    P L K+ +A NN T       +   N + L L  N   
Sbjct: 137 K-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 30/166 (18%), Positives = 50/166 (30%), Gaps = 26/166 (15%)

Query: 206 PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERL 265
            V  ++S   +      L   LPP +     +   + ++ N        +    +   +L
Sbjct: 5   EVSKVASHLEVNCDKRNL-TALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 266 ELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSL------ 319
            L   +     +  +     +  L+    N       +  LP     L  L  L      
Sbjct: 61  NLDRAELTKLQVDGTLPVLGTLDLSH---NQ------LQSLPLLGQTLPALTVLDVSFNR 111

Query: 320 -------ATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYN 358
                  A   L  ++EL L  N L    P LL     L  L+L N
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 46/318 (14%), Positives = 105/318 (33%), Gaps = 41/318 (12%)

Query: 51  SSLTNSVNLCEWTGVTCASLRFINIADNGVQGEIPNELGNLVRLE------KLILANNSF 104
            +      + + +  T A+L   NI       +    L  L +L+       L L N   
Sbjct: 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET 232

Query: 105 SGTIPT---NLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQ----LP 157
           +         L   + +  F  +   L G++     +       +  + ++         
Sbjct: 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQ 292

Query: 158 ASIQNLSSHLEADSNRNNFGGKIPE-SPGQLRSLFYLNVGGNQFSGMFLPVY-NLSSLEM 215
           + I  + S++   +   +    +    P ++    +L+   N  +        +L+ LE 
Sbjct: 293 SYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELET 352

Query: 216 IYLHDNRLNGNLPPVIGA--KLPNLRKIVIALNNFTGPLPD-SFSNASNRERLELSYNQF 272
           + L  N+L   L  +     ++ +L+++ I+ N+ +        S   +   L +S N  
Sbjct: 353 LILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI- 410

Query: 273 RGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSL------------- 319
               +  +       R+   D + +     I  +P  +  L  L  L             
Sbjct: 411 ----LTDTIFRCLPPRIKVLDLHSN----KIKSIPKQVVKLEALQELNVASNQLKSVPDG 462

Query: 320 ATDSLKSIEELDLSSNNL 337
             D L S++++ L +N  
Sbjct: 463 IFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.6 bits (113), Expect = 4e-06
 Identities = 48/316 (15%), Positives = 87/316 (27%), Gaps = 30/316 (9%)

Query: 69  SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNIL 128
            LR + I+ N +Q    +       LE L L++N     I  +    +   L  +     
Sbjct: 46  KLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH-PTVNLKHLDLSFNAFD 103

Query: 129 AGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLR 188
           A  I  E GN+ +L+ L      L       I +L+           +     E P  L+
Sbjct: 104 ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETY--GEKEDPEGLQ 161

Query: 189 SLFYLNVGGNQFSG--------------MFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAK 234
                ++     +                 L + N+  +         L+         K
Sbjct: 162 DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPK 221

Query: 235 LPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQ 294
           L NL    I     +          +      +S  + +G+  +R    S +        
Sbjct: 222 LSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIH 281

Query: 295 NHHGRQQNIC------------YLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLP 342
                                      +S    +  L    +     LD S+N L+  + 
Sbjct: 282 QVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVF 341

Query: 343 RLLVNLSFLVLLNLYN 358
               +L+ L  L L  
Sbjct: 342 ENCGHLTELETLILQM 357

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 44/265 (16%), Positives = 84/265 (31%), Gaps = 35/265 (13%)

Query: 104 FSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNL 163
            S     NL L +   +   N+      I A++    KL  L+   I+ T      I  L
Sbjct: 184 VSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL 243

Query: 164 ---SSHLEADSNRNNFGGKIPESPG-----QLRSLFYLNVGGNQFSGMFLPVYN-LSSLE 214
              ++      +     G++           L++L    V  + F      +Y   S++ 
Sbjct: 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMN 303

Query: 215 MIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRG 274
           +     +            K+     +  + N  T  + ++  + +  E L L  NQ   
Sbjct: 304 IKNFTVSGTRMVHMLCPS-KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL-- 360

Query: 275 KSIWRSAAT----SYSQRLN-DDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEE 329
           K + + A         Q+L+   +   +  ++  C                    KS+  
Sbjct: 361 KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC-----------------SWTKSLLS 403

Query: 330 LDLSSNNL-SGQLPRLLVNLSFLVL 353
           L++SSN L       L   +  L L
Sbjct: 404 LNMSSNILTDTIFRCLPPRIKVLDL 428

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.1 bits (104), Expect = 6e-05
 Identities = 37/266 (13%), Positives = 77/266 (28%), Gaps = 11/266 (4%)

Query: 94  LEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLT 153
              L ++ N  S    +++   SKL +   + N +     +      +LE L     KL 
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82

Query: 154 GQLPASIQNLSSHLEADSNRNNFGGKIPESP--GQLRSLFYLNVGGNQFSGMFLPVYNLS 211
                S     +    D + N F   +P     G +  L +L +           V  ++
Sbjct: 83  K---ISCHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIA 136

Query: 212 SLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQ 271
            L +  +                L +     + +   T        + S +    L  + 
Sbjct: 137 HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

Query: 272 FRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELD 331
            +   +  +  + +   L     N       +  +    +    +  L      ++    
Sbjct: 197 IKC-VLEDNKCSYFLSILAKLQTNPKLSNLTLNNIE--TTWNSFIRILQLVWHTTVWYFS 253

Query: 332 LSSNNLSGQLPRLLVNLSFLVLLNLY 357
           +S+  L GQL     + S   L  L 
Sbjct: 254 ISNVKLQGQLDFRDFDYSGTSLKALS 279

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 44/249 (17%), Positives = 86/249 (34%), Gaps = 24/249 (9%)

Query: 69  SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNIL 128
           S+  I   ++ ++  +   +  L  + KL L  N  +      L+    L   F + N +
Sbjct: 44  SIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGNKLTDI--KPLTNLKNLGWLFLDENKI 99

Query: 129 AGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSS-----HLEADSNRNNFGGKIPES 183
             ++ + + +L KL+ LS     ++      I  L        L   +N+          
Sbjct: 100 K-DLSS-LKDLKKLKSLSLEHNGIS-----DINGLVHLPQLESLYLGNNKI----TDITV 148

Query: 184 PGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVI 243
             +L  L  L++  NQ S + +P+  L+ L+ +YL  N ++ +L  +  A L NL  + +
Sbjct: 149 LSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHIS-DLRAL--AGLKNLDVLEL 204

Query: 244 ALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNI 303
                     +  SN      ++ +        I           +             I
Sbjct: 205 FSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFI 264

Query: 304 CYLPTGISN 312
            Y P  I  
Sbjct: 265 FYQPVTIGK 273

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 40.9 bits (95), Expect = 6e-04
 Identities = 50/271 (18%), Positives = 87/271 (32%), Gaps = 57/271 (21%)

Query: 88  LGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF 147
                   K  L   S +    T   L S   +   N +I    +   I  L  + KL  
Sbjct: 17  DDAFAETIKDNLKKKSVT-DAVTQNELNSIDQIIANNSDI--KSVQG-IQYLPNVTKLFL 72

Query: 148 CVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPV 207
              KLT      I+ L++                     L++L +L +  N+   +   +
Sbjct: 73  NGNKLT-----DIKPLTN---------------------LKNLGWLFLDENKIKDLS-SL 105

Query: 208 YNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLEL 267
            +L  L+ + L  N ++ ++  +    LP L  + +  N  T       S  +  + L L
Sbjct: 106 KDLKKLKSLSLEHNGIS-DINGL--VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSL 160

Query: 268 SYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSI 327
             NQ     I   A  +  Q L     +              IS+L  L  L     K++
Sbjct: 161 EDNQI--SDIVPLAGLTKLQNLYLSKNH--------------ISDLRALAGL-----KNL 199

Query: 328 EELDLSSNNLSGQLPRLLVNLSFLVLLNLYN 358
           + L+L S     +      NL     +   +
Sbjct: 200 DVLELFSQECLNKPINHQSNLVVPNTVKNTD 230

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 42/191 (21%), Positives = 66/191 (34%), Gaps = 53/191 (27%)

Query: 186 QLRSLFYLNVGGNQFS----GMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKI 241
           +L  L  L +  N+      G+F     L +LE +++ DN+L   LP  +  +L NL ++
Sbjct: 59  RLTKLRLLYLNDNKLQTLPAGIFK---ELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAEL 114

Query: 242 VIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQ 301
            +  N      P  F + +    L L YN+            S                 
Sbjct: 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL----------QS----------------- 147

Query: 302 NICYLPTGI-SNLVNLDSL-------------ATDSLKSIEELDLSSNNLSGQLPRLLVN 347
               LP G+   L +L  L             A D L  ++ L L +N L         +
Sbjct: 148 ----LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203

Query: 348 LSFLVLLNLYN 358
           L  L +L L  
Sbjct: 204 LEKLKMLQLQE 214

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 43/209 (20%), Positives = 76/209 (36%), Gaps = 36/209 (17%)

Query: 68  ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLR-SKLMLFFANRN 126
           A  + +++  N +          L +L  L L +N    T+P  +      L   +   N
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN 95

Query: 127 ILAGEIPAEI-GNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPG 185
            L   +P  +   L  L +L     +L   LP  +               F         
Sbjct: 96  KLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRV---------------FDS------- 131

Query: 186 QLRSLFYLNVGGNQF----SGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKI 241
            L  L YL++G N+      G+F     L+SL+ + L++N+L   +P     KL  L+ +
Sbjct: 132 -LTKLTYLSLGYNELQSLPKGVF---DKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTL 186

Query: 242 VIALNNFTGPLPDSFSNASNRERLELSYN 270
            +  N        +F +    + L+L  N
Sbjct: 187 KLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 50/291 (17%), Positives = 90/291 (30%), Gaps = 57/291 (19%)

Query: 69  SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNIL 128
            +  +N+ D  ++            ++KL +  N+     P        L +    RN L
Sbjct: 76  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135

Query: 129 AGEIPAEI-GNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQL 187
           +  +P  I  N  KL  LS     L      + Q  +S      + N     +      +
Sbjct: 136 S-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLI 191

Query: 188 RSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNN 247
            SLF+ NV  N  S     +    ++E +    N +N  +   +      L  + +  NN
Sbjct: 192 PSLFHANVSYNLLST----LAIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNN 243

Query: 248 FTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLP 307
            T        N      ++LSYN+                                    
Sbjct: 244 LTDT--AWLLNYPGLVEVDLSYNE------------------------------------ 265

Query: 308 TGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYN 358
                L  +       ++ +E L +S+N L   L      +  L +L+L +
Sbjct: 266 -----LEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSH 310

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 29/179 (16%), Positives = 53/179 (29%), Gaps = 49/179 (27%)

Query: 181 PESPGQLRSLFYLNVGGNQFS----GMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLP 236
                  R +  LN+   Q        F       +++ +Y+  N +   LPP +   +P
Sbjct: 68  AALLDSFRQVELLNLNDLQIEEIDTYAFA---YAHTIQKLYMGFNAIR-YLPPHVFQNVP 123

Query: 237 NLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNH 296
            L  +V+  N+ +      F N      L +S N                          
Sbjct: 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN------------------------- 158

Query: 297 HGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLN 355
                           L  ++     +  S++ L LSSN L+     L+ +L    +  
Sbjct: 159 ----------------LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSY 201

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 44/293 (15%), Positives = 95/293 (32%), Gaps = 40/293 (13%)

Query: 83  EIPNELGNLVRLEKLILANNSFSGT-IPTNLSLRSKLMLFFANRNILAGEIPAEI-GNLF 140
            I + L        + +   +        +++L ++ ++ F N  +   ++PA +  +  
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFR 75

Query: 141 KLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQF 200
           ++E L+   +++      +     +  +     N      P     +  L  L +  N  
Sbjct: 76  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135

Query: 201 S----GMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSF 256
           S    G+F   +N   L  + + +N L   +         +L+ + ++ N  T       
Sbjct: 136 SSLPRGIF---HNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLI 191

Query: 257 SNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNL 316
            +        +SYN         + A   +    D   N      +I  +   +   V L
Sbjct: 192 PSL---FHANVSYNLLS------TLAIPIAVEELDASHN------SINVVRGPV--NVEL 234

Query: 317 DSL-----------ATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYN 358
             L              +   + E+DLS N L   +    V +  L  L + N
Sbjct: 235 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 24/181 (13%), Positives = 56/181 (30%), Gaps = 30/181 (16%)

Query: 187 LRSLFYLNVGGNQF-----SGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAK-LPNLRK 240
           L  + ++ +   +               L  L+ + + +  L    P +           
Sbjct: 79  LSKVTHIEIRNTRNLTYIDPDAL---KELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFI 134

Query: 241 IVIALNNFTGPLP-DSFSNASNR-ERLELSYNQFRGKSIWRSA-ATSYSQRLNDDDQNHH 297
           + I  N +   +P ++F    N    L+L  N F   S+   A   +    +  +   + 
Sbjct: 135 LEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT--SVQGYAFNGTKLDAVYLNKNKY- 191

Query: 298 GRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLY 357
                +  +         + S           LD+S  +++    + L +L  L+  N +
Sbjct: 192 -----LTVIDKDA--FGGVYSG-------PSLLDVSQTSVTALPSKGLEHLKELIARNTW 237

Query: 358 N 358
            
Sbjct: 238 T 238

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 8/91 (8%)

Query: 186 QLRSLFYLNVGGNQF----SGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKI 241
            LRSL  L + GN+       +F     L SL+++ L+ N++N  L       L NL  +
Sbjct: 78  GLRSLNSLVLYGNKITELPKSLF---EGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLL 133

Query: 242 VIALNNFTGPLPDSFSNASNRERLELSYNQF 272
            +  N        +FS     + + L+ N F
Sbjct: 134 SLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 8/91 (8%)

Query: 187 LRSLFYLNVGGNQFS----GMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIV 242
            + L  +++  NQ S      F     L SL  + L+ N++   LP  +   L +L+ ++
Sbjct: 55  YKKLRRIDLSNNQISELAPDAF---QGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLL 110

Query: 243 IALNNFTGPLPDSFSNASNRERLELSYNQFR 273
           +  N       D+F +  N   L L  N+ +
Sbjct: 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 45/276 (16%), Positives = 82/276 (29%), Gaps = 32/276 (11%)

Query: 87  ELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS 146
           +L     L  L   +N  +    T L+   KL     + N L      ++     L  L+
Sbjct: 80  DLSQNTNLTYLACDSNKLTNLDVTPLT---KLTYLNCDTNKLT---KLDVSQNPLLTYLN 133

Query: 147 FCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLP 206
                LT ++  S  + +   E D + N    K+  +      L  L+   N+ +   L 
Sbjct: 134 CARNTLT-EIDVS--HNTQLTELDCHLNKKITKLDVT--PQTQLTTLDCSFNKITE--LD 186

Query: 207 VYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLE 266
           V     L  +    N +   L      +   L  +  + N  T       +  +     +
Sbjct: 187 VSQNKLLNRLNCDTNNIT-KLDL---NQNIQLTFLDCSSNKLTEI---DVTPLTQLTYFD 239

Query: 267 LSYNQFRGKSIWRSAATSYSQRLNDDDQNHH----GRQQNICYLPTGISNLVNLDSLATD 322
            S N      +  S  +     L+    +           + Y          +  L   
Sbjct: 240 CSVNPL--TELDVSTLSKL-TTLHCIQTDLLEIDLTHNTQLIYF--QAEGCRKIKELDVT 294

Query: 323 SLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYN 358
               +  LD  +  ++ +L   L     LV L L N
Sbjct: 295 HNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNN 327

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 45/290 (15%), Positives = 103/290 (35%), Gaps = 43/290 (14%)

Query: 88  LGNLVRLEKLILANNSFSGTIP-TNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS 146
              L    K+    ++ + T+   +L   + L  F      + G     +  L  L  L 
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG-----VQYLNNLIGLE 69

Query: 147 FCVIKLTGQLPASIQNLS--SHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMF 204
               ++T      +  L   + +       N    +  +   L+S+  L++   Q + + 
Sbjct: 70  LKDNQIT-----DLAPLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDVT 123

Query: 205 LPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRER 264
            P+  LS+L+++YL  N++  N+ P+  A L NL+ + I     +       +N S    
Sbjct: 124 -PLAGLSNLQVLYLDLNQIT-NISPL--AGLTNLQYLSIGNAQVSDL--TPLANLSKLTT 177

Query: 265 LELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSL 324
           L+   N+     I   A+      ++  +                IS++  L +      
Sbjct: 178 LKADDNKI--SDISPLASLPNLIEVHLKN--------------NQISDVSPLANT----- 216

Query: 325 KSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYNHFDGEVPTKGVFNNKT 374
            ++  + L++  ++     +  N + +V   +       +    + +N T
Sbjct: 217 SNLFIVTLTNQTIT--NQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGT 264

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 8/92 (8%)

Query: 186 QLRSLFYLNVGGNQFS----GMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKI 241
           +L  L  +N   N+ +    G F      S +  I L  NRL  N+   +   L +L+ +
Sbjct: 55  KLPQLRKINFSNNKITDIEEGAF---EGASGVNEILLTSNRLE-NVQHKMFKGLESLKTL 110

Query: 242 VIALNNFTGPLPDSFSNASNRERLELSYNQFR 273
           ++  N  T    DSF   S+   L L  NQ  
Sbjct: 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 39.6 bits (93), Expect = 9e-04
 Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 186 QLRSLFYLNVGGNQF----SGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKI 241
               +  + +  N+       MF     L SL+ + L  NR+   +       L ++R +
Sbjct: 79  GASGVNEILLTSNRLENVQHKMF---KGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLL 134

Query: 242 VIALNNFTGPLPDSFSNASNRERLELSYNQF 272
            +  N  T   P +F    +   L L  N F
Sbjct: 135 SLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 40/328 (12%), Positives = 94/328 (28%), Gaps = 60/328 (18%)

Query: 36  LLAIKSQLHDPLEVTSSLTNSVNLCEWTGVTCASLRFINIADNGVQGEIPNELGNLVRLE 95
            +     + D   ++            + V    L   ++ D   Q             +
Sbjct: 270 RMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQK 329

Query: 96  KLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQ 155
           + +L  +        + +         +        + +E+ +  +L++L          
Sbjct: 330 ECVLLKDRPECWCRDSATDEQLFRCELSVEKST--VLQSELESCKELQELEPENKWCLLT 387

Query: 156 L---PASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSS 212
           +     ++  L    E     +      P     +R+ +  ++         +     + 
Sbjct: 388 IILLMRALDPLLYEKETLQYFSTLKAVDP-----MRAAYLDDLRSKFLLENSVLKMEYAD 442

Query: 213 LEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQF 272
           + +++L    L   L  +   +L  +  + ++ N     LP + +     E L+ S N  
Sbjct: 443 VRVLHLAHKDLT-VLCHL--EQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNA- 497

Query: 273 RGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDL 332
                                                + N+  + +L       ++EL L
Sbjct: 498 -------------------------------------LENVDGVANL-----PRLQELLL 515

Query: 333 SSNNLSGQLPRL--LVNLSFLVLLNLYN 358
            +N L  Q   +  LV+   LVLLNL  
Sbjct: 516 CNNRLQ-QSAAIQPLVSCPRLVLLNLQG 542

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	409
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.98
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.98
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.97
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.97
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.97
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.97
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.96
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.96
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.96
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.96
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.96
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.95
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.93
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.92
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.91
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.91
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.9
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.9
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.9
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.9
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.89
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.88
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.88
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.87
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.87
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.84
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.84
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.83
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.83
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.82
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.82
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.81
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.81
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.81
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.8
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.8
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.8
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.79
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.78
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.78
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.77
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.75
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.74
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.72
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.71
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.7
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.7
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.67
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.67
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.65
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.65
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.63
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.6
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.58
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.57
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.56
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.54
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.54
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.52
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.52
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.49
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.48
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.45
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.31
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.3
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.27
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.24
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.24
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.14
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.02
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.0
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.94
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.93
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.63
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.51
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.42
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.35
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.15
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.03
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.0
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.91
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.1
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.89
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.85
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.56

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.2e-45  Score=383.88  Aligned_cols=352  Identities=24%  Similarity=0.307  Sum_probs=217.4

Q ss_pred             cccCCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCceeeecC--CCcEEEecCCCCccc---cCc------------
Q 048551           24 TIINANETDRLALLAIKSQLHDPLEVTSSLTNSVNLCEWTGVTCA--SLRFINIADNGVQGE---IPN------------   86 (409)
Q Consensus        24 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~~~g~~c~--~l~~L~L~~n~l~~~---~p~------------   86 (409)
                      +++++.++|++||++||+++.||. .+++|..+.+||.|.||+|+  +|+.|+|+++.+.|.   +|+            
T Consensus         5 ~~~~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~   83 (768)
T 3rgz_A            5 SPSQSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLF   83 (768)
T ss_dssp             ---CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEE
T ss_pred             ccccCCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEECCCcEEEEECCCCCcCCccCccChhHhccCcccccC
Confidence            334456789999999999999888 88999988899999999994  789999999998876   544            


Q ss_pred             -----------cccCCCCCCEEEccCCcccccCCc--cccCCCCCcEEEcCCCcCCccCCccc-CCCCCCcEEEeecccc
Q 048551           87 -----------ELGNLVRLEKLILANNSFSGTIPT--NLSLRSKLMLFFANRNILAGEIPAEI-GNLFKLEKLSFCVIKL  152 (409)
Q Consensus        87 -----------~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l  152 (409)
                                 .++.+++|++|+|++|.+++.+|.  .++.+++|++|++++|.+++..|..+ .++++|++|++++|.+
T Consensus        84 ~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l  163 (768)
T 3rgz_A           84 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI  163 (768)
T ss_dssp             CTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC
T ss_pred             CcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCcc
Confidence                       556666666677777666666666  66666667777776666666555544 5666666666666666


Q ss_pred             cccCCcc---ccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCch
Q 048551          153 TGQLPAS---IQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPP  229 (409)
Q Consensus       153 ~~~~p~~---l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~  229 (409)
                      ++..|..   +.++++|++|++++|.+.+..+.  ..+++|++|++++|.+++.++.+.++++|++|++++|.+++.+|.
T Consensus       164 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~  241 (768)
T 3rgz_A          164 SGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR  241 (768)
T ss_dssp             EEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHH
T ss_pred             CCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccH
Confidence            6555544   45556666666666665544432  555666666666666665555556666666666666666655555


Q ss_pred             HHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh--hcccCcEEecccCCccccccccccCC
Q 048551          230 VIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA--ATSYSQRLNDDDQNHHGRQQNICYLP  307 (409)
Q Consensus       230 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~--l~~l~~~L~l~~n~l~~~~~~l~~ip  307 (409)
                      .+. .+++|++|++++|.+++.+|..  .+++|++|++++|++++.....+.  .+++ +.|++++|.+.      +.+|
T Consensus       242 ~l~-~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L-~~L~Ls~n~l~------~~~p  311 (768)
T 3rgz_A          242 AIS-TCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTL-TGLDLSGNHFY------GAVP  311 (768)
T ss_dssp             HTT-TCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTC-SEEECCSSEEE------ECCC
T ss_pred             HHh-cCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcC-CEEECcCCcCC------Cccc
Confidence            555 5666666666666665555443  555566666666655543322111  1333 66666666665      4555


Q ss_pred             hhccCCCCCCccc--------------cCCCCCCCEEECcCCccccccchhhhcCC-CCcEEEe-eccceecCCCC-CC-
Q 048551          308 TGISNLVNLDSLA--------------TDSLKSIEELDLSSNNLSGQLPRLLVNLS-FLVLLNL-YNHFDGEVPTK-GV-  369 (409)
Q Consensus       308 ~~~~~l~~L~~L~--------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L-~n~l~~~~p~~-~~-  369 (409)
                      ..++.+++|++|+              +.++++|++|++++|++++.+|..+..++ +|++|++ +|++.+.+|.. .. 
T Consensus       312 ~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~  391 (768)
T 3rgz_A          312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN  391 (768)
T ss_dssp             GGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCS
T ss_pred             hHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhc
Confidence            5555566665555              33455566666666666655555555554 5555555 55555444433 11 


Q ss_pred             -CCCCCeecccCCCCceecCC
Q 048551          370 -FNNKTRISLAGNGKLCGGFD  389 (409)
Q Consensus       370 -~~~L~~L~l~~Np~l~g~~p  389 (409)
                       +++|+.|++++| .+.|.+|
T Consensus       392 ~~~~L~~L~L~~n-~l~~~~p  411 (768)
T 3rgz_A          392 PKNTLQELYLQNN-GFTGKIP  411 (768)
T ss_dssp             TTCCCCEEECCSS-EEEEECC
T ss_pred             ccCCccEEECCCC-ccccccC
Confidence             344444444444 3444443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.1e-44  Score=340.46  Aligned_cols=294  Identities=29%  Similarity=0.494  Sum_probs=218.7

Q ss_pred             CCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCC--ceeeecC------CCcEEEecCCCCcc--ccCccccCCCCCCE
Q 048551           27 NANETDRLALLAIKSQLHDPLEVTSSLTNSVNLCE--WTGVTCA------SLRFINIADNGVQG--EIPNELGNLVRLEK   96 (409)
Q Consensus        27 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~--~~g~~c~------~l~~L~L~~n~l~~--~~p~~~~~l~~L~~   96 (409)
                      .|.++|++||++||+++.+|. .+.+|..+.+||.  |.||.|+      ++++|++++|++++  .+|..+.++++|++
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~   80 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF   80 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCe
Confidence            588999999999999998876 6789988889998  9999995      46667777777766  66666666666666


Q ss_pred             EEccC-CcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCC
Q 048551           97 LILAN-NSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNN  175 (409)
Q Consensus        97 L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~  175 (409)
                      |++++ |.+++.+|..|..+++|++|++++|.+++.+|..++.+++|++|++++|.+++.+|..+..+++|++|++++|.
T Consensus        81 L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~  160 (313)
T 1ogq_A           81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR  160 (313)
T ss_dssp             EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred             eeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc
Confidence            66663 66666666666666666666666666655555555555555555555555555555555555555555555555


Q ss_pred             CCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCC-CCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccch
Q 048551          176 FGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLS-SLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPD  254 (409)
Q Consensus       176 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~  254 (409)
                      +++.+|.                       .+..++ +|+.|++++|.+++.+|..+. .++ |++|++++|.+++..|.
T Consensus       161 l~~~~p~-----------------------~l~~l~~~L~~L~L~~N~l~~~~~~~~~-~l~-L~~L~Ls~N~l~~~~~~  215 (313)
T 1ogq_A          161 ISGAIPD-----------------------SYGSFSKLFTSMTISRNRLTGKIPPTFA-NLN-LAFVDLSRNMLEGDASV  215 (313)
T ss_dssp             CEEECCG-----------------------GGGCCCTTCCEEECCSSEEEEECCGGGG-GCC-CSEEECCSSEEEECCGG
T ss_pred             ccCcCCH-----------------------HHhhhhhcCcEEECcCCeeeccCChHHh-CCc-ccEEECcCCcccCcCCH
Confidence            4444443                       444554 666666666666666777766 555 88888988888888888


Q ss_pred             hhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcC
Q 048551          255 SFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSS  334 (409)
Q Consensus       255 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~  334 (409)
                      .+..+++|+.|++++|++++.                              +|. +           ..+++|++|++++
T Consensus       216 ~~~~l~~L~~L~L~~N~l~~~------------------------------~~~-~-----------~~l~~L~~L~Ls~  253 (313)
T 1ogq_A          216 LFGSDKNTQKIHLAKNSLAFD------------------------------LGK-V-----------GLSKNLNGLDLRN  253 (313)
T ss_dssp             GCCTTSCCSEEECCSSEECCB------------------------------GGG-C-----------CCCTTCCEEECCS
T ss_pred             HHhcCCCCCEEECCCCceeee------------------------------cCc-c-----------cccCCCCEEECcC
Confidence            888999999999999988742                              222 2           2347889999999


Q ss_pred             CccccccchhhhcCCCCcEEEe-eccceecCCCCCCCCCCCeecccCCCCceecC
Q 048551          335 NNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTKGVFNNKTRISLAGNGKLCGGF  388 (409)
Q Consensus       335 N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~~~~~~L~~L~l~~Np~l~g~~  388 (409)
                      |++++.+|..+..+++|++|++ +|++++.+|....+++|+.+++++||.+||.+
T Consensus       254 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             SCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTT
T ss_pred             CcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCC
Confidence            9999999999999999999999 99999999988889999999999999999974

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4.3e-44  Score=367.51  Aligned_cols=361  Identities=20%  Similarity=0.291  Sum_probs=287.1

Q ss_pred             CHHHHHHHHHHHHhCCCC-CCC-------CCCCCCCCCCCCc---eeeecC---CCcEEEecCCCCccccCccccCCCCC
Q 048551           29 NETDRLALLAIKSQLHDP-LEV-------TSSLTNSVNLCEW---TGVTCA---SLRFINIADNGVQGEIPNELGNLVRL   94 (409)
Q Consensus        29 ~~~~~~~l~~~~~~~~~~-~~~-------~~~w~~~~~~c~~---~g~~c~---~l~~L~L~~n~l~~~~p~~~~~l~~L   94 (409)
                      ...|++||.++++++.++ |..       ..+|..+.++|.|   .||+|+   +|+.|+|+++++.|.+|+.++++++|
T Consensus        28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~L  107 (636)
T 4eco_A           28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTEL  107 (636)
T ss_dssp             HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTTC
T ss_pred             HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCccc
Confidence            347999999999998544 322       2379988999999   999995   79999999999999999999999999


Q ss_pred             CEEEccCCc-----------------------------------------------------------------------
Q 048551           95 EKLILANNS-----------------------------------------------------------------------  103 (409)
Q Consensus        95 ~~L~L~~n~-----------------------------------------------------------------------  103 (409)
                      ++|+|++|.                                                                       
T Consensus       108 ~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~  187 (636)
T 4eco_A          108 EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQ  187 (636)
T ss_dssp             CEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTT
T ss_pred             eEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhh
Confidence            999999884                                                                       


Q ss_pred             -------ccccCCccccCCCCCcEEEcCCCcCCcc-----------------CCcccC--CCCCCcEEEeecccccccCC
Q 048551          104 -------FSGTIPTNLSLRSKLMLFFANRNILAGE-----------------IPAEIG--NLFKLEKLSFCVIKLTGQLP  157 (409)
Q Consensus       104 -------l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------~p~~~~--~l~~L~~L~L~~n~l~~~~p  157 (409)
                             +++ +|..++++++|++|++++|.+++.                 +|..++  ++++|++|++++|.+.+.+|
T Consensus       188 l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p  266 (636)
T 4eco_A          188 IGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP  266 (636)
T ss_dssp             TTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC
T ss_pred             hccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh
Confidence                   344 788899999999999999999985                 999998  99999999999999999999


Q ss_pred             ccccCCCCCcEEeCCCCC-CCC-CCCCCCCCC------CCCcEEEccCCcCcccCc--ccCCCCCCcEEEeecCcCcccC
Q 048551          158 ASIQNLSSHLEADSNRNN-FGG-KIPESPGQL------RSLFYLNVGGNQFSGMFL--PVYNLSSLEMIYLHDNRLNGNL  227 (409)
Q Consensus       158 ~~l~~l~~L~~L~l~~n~-l~~-~~~~~~~~l------~~L~~L~l~~n~l~~~~~--~~~~l~~L~~L~l~~n~l~~~~  227 (409)
                      ..++++++|++|++++|+ +++ .+|..++.+      ++|++|++++|.++.++.  .+.++++|+.|++++|.++|.+
T Consensus       267 ~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~i  346 (636)
T 4eco_A          267 TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL  346 (636)
T ss_dssp             TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEEC
T ss_pred             HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccch
Confidence            999999999999999998 888 788777665      899999999999996665  6889999999999999999888


Q ss_pred             chHHhhCCCccceeeccccccccccchhhhcCCC-CCEEEcccCcCccccchhhh--hcccCcEEecccCCccccc----
Q 048551          228 PPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASN-RERLELSYNQFRGKSIWRSA--ATSYSQRLNDDDQNHHGRQ----  300 (409)
Q Consensus       228 p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~~~~~~--l~~l~~~L~l~~n~l~~~~----  300 (409)
                      | .+. .+++|++|++++|+++ .+|..+..+++ |++|++++|+++..+.....  +.++ +.|++++|.+.+..    
T Consensus       347 p-~~~-~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L-~~L~Ls~N~l~~~~p~~l  422 (636)
T 4eco_A          347 P-AFG-SEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVM-SAIDFSYNEIGSVDGKNF  422 (636)
T ss_dssp             C-CCE-EEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCE-EEEECCSSCTTTTTTCSS
T ss_pred             h-hhC-CCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCcc-CEEECcCCcCCCcchhhh
Confidence            8 665 7889999999999988 77888888888 99999999988865421111  2234 77777777776411    


Q ss_pred             c----------cc----------ccCChhc-cCCCCCCccccCC--------------------CCCCCEEECcCCcccc
Q 048551          301 Q----------NI----------CYLPTGI-SNLVNLDSLATDS--------------------LKSIEELDLSSNNLSG  339 (409)
Q Consensus       301 ~----------~l----------~~ip~~~-~~l~~L~~L~~~~--------------------l~~L~~L~Ls~N~l~~  339 (409)
                      .          .+          ..+|..+ ..+++|+.|++++                    +++|++|++++|+++ 
T Consensus       423 ~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-  501 (636)
T 4eco_A          423 DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-  501 (636)
T ss_dssp             CTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-
T ss_pred             cccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-
Confidence            0          11          2455543 3467777777221                    127888888888888 


Q ss_pred             ccchhhh--cCCCCcEEEe-eccceecCCCC-CCCCCCCeecccCCC-----CceecCCCCCCCCCC
Q 048551          340 QLPRLLV--NLSFLVLLNL-YNHFDGEVPTK-GVFNNKTRISLAGNG-----KLCGGFDGLHSPSCH  397 (409)
Q Consensus       340 ~~p~~~~--~l~~L~~L~L-~n~l~~~~p~~-~~~~~L~~L~l~~Np-----~l~g~~p~~~~~~~~  397 (409)
                      .+|..+.  .+++|++|++ +|++.+ +|.. ..+++|+.|++++|+     .+.|.+|. .+..|+
T Consensus       502 ~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~-~l~~l~  566 (636)
T 4eco_A          502 KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE-GITLCP  566 (636)
T ss_dssp             BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT-TGGGCS
T ss_pred             ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChH-HHhcCC
Confidence            6777776  8888888888 777776 6665 678888888885432     45677775 444443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.5e-42  Score=360.83  Aligned_cols=321  Identities=28%  Similarity=0.448  Sum_probs=258.9

Q ss_pred             CCCcEEEecCCCCccccCcc-ccCCCCCCEEEccCCcccccCCccccC---------------------------CCCCc
Q 048551           68 ASLRFINIADNGVQGEIPNE-LGNLVRLEKLILANNSFSGTIPTNLSL---------------------------RSKLM  119 (409)
Q Consensus        68 ~~l~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~---------------------------l~~L~  119 (409)
                      .++++|++++|.++|.+|.. +..+++|++|++++|.+++.+|..+..                           +++|+
T Consensus       318 ~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~  397 (768)
T 3rgz_A          318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ  397 (768)
T ss_dssp             TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCC
T ss_pred             CCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCcc
Confidence            36666777776666666654 666666666666666666555554433                           45666


Q ss_pred             EEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCc
Q 048551          120 LFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQ  199 (409)
Q Consensus       120 ~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  199 (409)
                      +|++++|.+++.+|..++.+++|++|++++|.+++.+|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|.
T Consensus       398 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~  477 (768)
T 3rgz_A          398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND  477 (768)
T ss_dssp             EEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred             EEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc
Confidence            67777777766777778888888888888888888888888888888888888888888888888888888899998888


Q ss_pred             CcccCc-ccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccch
Q 048551          200 FSGMFL-PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIW  278 (409)
Q Consensus       200 l~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~  278 (409)
                      +++..+ .+.++++|+.|++++|++++.+|.+++ .+++|++|++++|++++.+|..+..+++|+.|++++|+++|....
T Consensus       478 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~  556 (768)
T 3rgz_A          478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA  556 (768)
T ss_dssp             CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred             ccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh-cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence            887777 788888999999999999888888887 788999999999999888898899999999999999988764321


Q ss_pred             hhh-----------------------------------------------------------------------hcccCc
Q 048551          279 RSA-----------------------------------------------------------------------ATSYSQ  287 (409)
Q Consensus       279 ~~~-----------------------------------------------------------------------l~~l~~  287 (409)
                      .+.                                                                       +.++ +
T Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L-~  635 (768)
T 3rgz_A          557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM-M  635 (768)
T ss_dssp             GGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC-C
T ss_pred             HHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc-c
Confidence            100                                                                       1223 7


Q ss_pred             EEecccCCccccccccccCChhccCCCCCCccc-------------cCCCCCCCEEECcCCccccccchhhhcCCCCcEE
Q 048551          288 RLNDDDQNHHGRQQNICYLPTGISNLVNLDSLA-------------TDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLL  354 (409)
Q Consensus       288 ~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~-------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  354 (409)
                      .||+++|+++      +.+|..++.++.|+.|+             ++++++|+.|||++|+++|.+|..+..+++|++|
T Consensus       636 ~LdLs~N~l~------g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L  709 (768)
T 3rgz_A          636 FLDMSYNMLS------GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI  709 (768)
T ss_dssp             EEECCSSCCB------SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred             EEECcCCccc------ccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence            8999999998      78999999999999998             5678899999999999999999999999999999


Q ss_pred             Ee-eccceecCCCCCCCCCCCeecccCCCCceecCCCCCCCCCCCCC
Q 048551          355 NL-YNHFDGEVPTKGVFNNKTRISLAGNGKLCGGFDGLHSPSCHSKD  400 (409)
Q Consensus       355 ~L-~n~l~~~~p~~~~~~~L~~L~l~~Np~l~g~~p~~~~~~~~~~~  400 (409)
                      ++ +|+++|.+|..+.+.++....+.|||.+||.+    ++.|....
T Consensus       710 ~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~----l~~C~~~~  752 (768)
T 3rgz_A          710 DLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP----LPRCDPSN  752 (768)
T ss_dssp             ECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTT----SCCCCSCC
T ss_pred             ECcCCcccccCCCchhhccCCHHHhcCCchhcCCC----CcCCCCCc
Confidence            99 99999999988788888889999999999963    35786554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.1e-41  Score=354.81  Aligned_cols=351  Identities=17%  Similarity=0.228  Sum_probs=249.3

Q ss_pred             CCCHHHHHHHHHHHHhCCCCCCCCCCCCCCC-----CC--CCc------------eeeecC---CCcEEEecCCCCcccc
Q 048551           27 NANETDRLALLAIKSQLHDPLEVTSSLTNSV-----NL--CEW------------TGVTCA---SLRFINIADNGVQGEI   84 (409)
Q Consensus        27 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~-----~~--c~~------------~g~~c~---~l~~L~L~~n~l~~~~   84 (409)
                      +...+|++||++||+++.+|     +|+.+.     ++  |.|            .||+|+   +|+.|+|+++++.|.+
T Consensus       265 ~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~i  339 (876)
T 4ecn_A          265 AEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV  339 (876)
T ss_dssp             CHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEE
T ss_pred             ccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcC
Confidence            34568999999999999776     565433     55  999            999996   7999999999999999


Q ss_pred             CccccCCCCCCEEEc-cCCccccc--------------------------------------------------------
Q 048551           85 PNELGNLVRLEKLIL-ANNSFSGT--------------------------------------------------------  107 (409)
Q Consensus        85 p~~~~~l~~L~~L~L-~~n~l~~~--------------------------------------------------------  107 (409)
                      |+.++++++|++|+| ++|.+.|.                                                        
T Consensus       340 p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~  419 (876)
T 4ecn_A          340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK  419 (876)
T ss_dssp             CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCC
T ss_pred             chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccc
Confidence            999999999999999 77755433                                                        


Q ss_pred             --------------------CCccccCCCCCcEEEcCCCcCCc-----------------cCCcccC--CCCCCcEEEee
Q 048551          108 --------------------IPTNLSLRSKLMLFFANRNILAG-----------------EIPAEIG--NLFKLEKLSFC  148 (409)
Q Consensus       108 --------------------~~~~~~~l~~L~~L~l~~n~l~~-----------------~~p~~~~--~l~~L~~L~L~  148 (409)
                                          +|..+.++++|++|++++|.+++                 .+|..++  ++++|++|+++
T Consensus       420 ~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls  499 (876)
T 4ecn_A          420 DSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY  499 (876)
T ss_dssp             CCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred             ccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECc
Confidence                                78889999999999999999997                 3898887  99999999999


Q ss_pred             cccccccCCccccCCCCCcEEeCCCCC-CCC-CCCCCC-------CCCCCCcEEEccCCcCcccCc--ccCCCCCCcEEE
Q 048551          149 VIKLTGQLPASIQNLSSHLEADSNRNN-FGG-KIPESP-------GQLRSLFYLNVGGNQFSGMFL--PVYNLSSLEMIY  217 (409)
Q Consensus       149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~-~~~~~~-------~~l~~L~~L~l~~n~l~~~~~--~~~~l~~L~~L~  217 (409)
                      +|.+.+.+|..++++++|++|++++|+ +++ .+|..+       ..+++|++|++++|.++.++.  .+.++++|+.|+
T Consensus       500 ~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~  579 (876)
T 4ecn_A          500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLD  579 (876)
T ss_dssp             SCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEE
T ss_pred             CCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEE
Confidence            999999999999999999999999998 887 566533       344478888888887775554  577777777777


Q ss_pred             eecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCC-CCEEEcccCcCccccchhhh--h------------
Q 048551          218 LHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASN-RERLELSYNQFRGKSIWRSA--A------------  282 (409)
Q Consensus       218 l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~~~~~~--l------------  282 (409)
                      +++|.++ .+| .+. .+++|+.|++++|.++ .+|..+..+++ |+.|++++|+++..+.....  .            
T Consensus       580 Ls~N~l~-~lp-~~~-~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~  655 (876)
T 4ecn_A          580 CVHNKVR-HLE-AFG-TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNK  655 (876)
T ss_dssp             CTTSCCC-BCC-CCC-TTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSC
T ss_pred             CCCCCcc-cch-hhc-CCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCc
Confidence            7777777 777 554 6777777777777777 66666777776 77777777776644310000  0            


Q ss_pred             -----------------cccCcEEecccCCccc-------cccc----------cccCChhccC--------CCCCCccc
Q 048551          283 -----------------TSYSQRLNDDDQNHHG-------RQQN----------ICYLPTGISN--------LVNLDSLA  320 (409)
Q Consensus       283 -----------------~~l~~~L~l~~n~l~~-------~~~~----------l~~ip~~~~~--------l~~L~~L~  320 (409)
                                       .++ +.|++++|.+..       .++.          +..+|..+..        +++|+.|+
T Consensus       656 l~g~ip~l~~~l~~~~~~~L-~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~  734 (876)
T 4ecn_A          656 IGSEGRNISCSMDDYKGINA-STVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID  734 (876)
T ss_dssp             TTTTSSSCSSCTTTCCCCCE-EEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEE
T ss_pred             CCCccccchhhhccccCCCc-CEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEE
Confidence                             012 444444444442       0011          1234433222        12455554


Q ss_pred             ------------cC--CCCCCCEEECcCCccccccchhhhcCCCCcEEEe-e------ccceecCCCC-CCCCCCCeecc
Q 048551          321 ------------TD--SLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-Y------NHFDGEVPTK-GVFNNKTRISL  378 (409)
Q Consensus       321 ------------~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~------n~l~~~~p~~-~~~~~L~~L~l  378 (409)
                                  +.  .+++|+.|+|++|++++ +|..+..+++|+.|+| +      |++.+.+|.. ..+++|+.|++
T Consensus       735 Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~L  813 (876)
T 4ecn_A          735 LRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI  813 (876)
T ss_dssp             CCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred             CCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEEC
Confidence                        22  55666666666666664 5666666666776666 4      5556666654 55667777777


Q ss_pred             cCCCCceecCCC
Q 048551          379 AGNGKLCGGFDG  390 (409)
Q Consensus       379 ~~Np~l~g~~p~  390 (409)
                      ++| .+ +.+|.
T Consensus       814 s~N-~L-~~Ip~  823 (876)
T 4ecn_A          814 GSN-DI-RKVDE  823 (876)
T ss_dssp             CSS-CC-CBCCS
T ss_pred             CCC-CC-CccCH
Confidence            777 34 66665

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.7e-38  Score=311.05  Aligned_cols=302  Identities=18%  Similarity=0.156  Sum_probs=224.9

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccC-CccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTI-PTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF  147 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  147 (409)
                      ++++|++++|.+++..|..|.++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..++++++|++|++
T Consensus        31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  110 (455)
T 3v47_A           31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL  110 (455)
T ss_dssp             TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEEC
T ss_pred             ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeC
Confidence            6899999999999888999999999999999999997555 567899999999999999999888999999999999999


Q ss_pred             ecccccccCCcc--ccCCCCCcEEeCCCCCCCCCCCCC-CCCCCCCcEEEccCCcCcccCc-ccCCC-------------
Q 048551          148 CVIKLTGQLPAS--IQNLSSHLEADSNRNNFGGKIPES-PGQLRSLFYLNVGGNQFSGMFL-PVYNL-------------  210 (409)
Q Consensus       148 ~~n~l~~~~p~~--l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~l-------------  210 (409)
                      ++|.+++..|..  +..+++|++|++++|.+.+..|.. +.++++|++|++++|.+++..+ .+..+             
T Consensus       111 ~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n  190 (455)
T 3v47_A          111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI  190 (455)
T ss_dssp             TTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTC
T ss_pred             CCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccC
Confidence            999998755554  889999999999999999877776 7899999999999999988766 44433             


Q ss_pred             ---------------------CCCcEEEeecCcCcccCchHHhhC-----------------------------------
Q 048551          211 ---------------------SSLEMIYLHDNRLNGNLPPVIGAK-----------------------------------  234 (409)
Q Consensus       211 ---------------------~~L~~L~l~~n~l~~~~p~~~~~~-----------------------------------  234 (409)
                                           ++|+.|++++|.+++.+|..+...                                   
T Consensus       191 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  270 (455)
T 3v47_A          191 TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK  270 (455)
T ss_dssp             BCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTG
T ss_pred             cccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccc
Confidence                                 456666666666655444443311                                   


Q ss_pred             ---CCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh-hcccCcEEecccCCccccccccccCChhc
Q 048551          235 ---LPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA-ATSYSQRLNDDDQNHHGRQQNICYLPTGI  310 (409)
Q Consensus       235 ---l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-l~~l~~~L~l~~n~l~~~~~~l~~ip~~~  310 (409)
                         .++|++|++++|.+++..|..+..+++|++|++++|++++.+...+. +.++ +.|++++|.+.      +..|.. 
T Consensus       271 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~Ls~N~l~------~~~~~~-  342 (455)
T 3v47_A          271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL-LKLNLSQNFLG------SIDSRM-  342 (455)
T ss_dssp             GGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC-CEEECCSSCCC------EECGGG-
T ss_pred             cccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC-CEEECCCCccC------CcChhH-
Confidence               13444444445544444444445555555555555555444322222 2333 45555555444      111222 


Q ss_pred             cCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-CCCCCCCeecccCCCCceecC
Q 048551          311 SNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-GVFNNKTRISLAGNGKLCGGF  388 (409)
Q Consensus       311 ~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~~~~~L~~L~l~~Np~l~g~~  388 (409)
                                +.++++|++|++++|++++..|..+..+++|++|++ +|++++..+.. ..+++|+.|++++||.-| ..
T Consensus       343 ----------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~  411 (455)
T 3v47_A          343 ----------FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC-SC  411 (455)
T ss_dssp             ----------GTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-CT
T ss_pred             ----------hcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc-CC
Confidence                      456788999999999999888999999999999999 88888655544 678999999999996544 55


Q ss_pred             C
Q 048551          389 D  389 (409)
Q Consensus       389 p  389 (409)
                      |
T Consensus       412 ~  412 (455)
T 3v47_A          412 P  412 (455)
T ss_dssp             T
T ss_pred             C
Confidence            5

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=5.7e-37  Score=304.48  Aligned_cols=299  Identities=17%  Similarity=0.140  Sum_probs=239.9

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC  148 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  148 (409)
                      ++++|++++|++++..+..|.++++|++|+|++|.+++..|..|.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  112 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS  112 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence            67888888888887777788888888888888888887778888888888888888888885445567888888888888


Q ss_pred             cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccC
Q 048551          149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNL  227 (409)
Q Consensus       149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~  227 (409)
                      +|.+++..+..+.++++|++|++++|.+.+..+..|.++++|++|++++|.+++..+ .+.++++|+.|++++|.+.+..
T Consensus       113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~  192 (477)
T 2id5_A          113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR  192 (477)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC
T ss_pred             CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC
Confidence            888887778888888888888888888887778888888888888888888887766 6788888888888888888544


Q ss_pred             chHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh-hcccCcEEecccCCccccccccccC
Q 048551          228 PPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA-ATSYSQRLNDDDQNHHGRQQNICYL  306 (409)
Q Consensus       228 p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-l~~l~~~L~l~~n~l~~~~~~l~~i  306 (409)
                      +..+. .+++|++|++++|...+.+|.......+|+.|++++|++++.+...+. ++++ +.|++++|.+.       .+
T Consensus       193 ~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~-------~~  263 (477)
T 2id5_A          193 DYSFK-RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL-RFLNLSYNPIS-------TI  263 (477)
T ss_dssp             TTCSC-SCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC-CEEECCSSCCC-------EE
T ss_pred             hhhcc-cCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc-CeeECCCCcCC-------cc
Confidence            44454 788888888888887777777666667888888888888876644444 4555 88888888877       33


Q ss_pred             ChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-CCCCCCCeecccCCCCc
Q 048551          307 PTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-GVFNNKTRISLAGNGKL  384 (409)
Q Consensus       307 p~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~~~~~L~~L~l~~Np~l  384 (409)
                      +...          |.++++|+.|++++|++++..|..+..+++|++|++ +|++.+..+.. ..+++|+.|++++||..
T Consensus       264 ~~~~----------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          264 EGSM----------LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             CTTS----------CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             Chhh----------ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            3321          345678899999999999888889999999999999 77777654443 66788999999999877


Q ss_pred             ee
Q 048551          385 CG  386 (409)
Q Consensus       385 ~g  386 (409)
                      |.
T Consensus       334 c~  335 (477)
T 2id5_A          334 CD  335 (477)
T ss_dssp             CS
T ss_pred             Cc
Confidence            64

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.8e-36  Score=308.21  Aligned_cols=312  Identities=16%  Similarity=0.125  Sum_probs=210.7

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC  148 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  148 (409)
                      .+++|++++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|+.+++|++|+++
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  113 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI  113 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred             cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence            78999999999997778899999999999999999998888999999999999999999998888889999999999999


Q ss_pred             cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCc--EEEeecCcCcc
Q 048551          149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLE--MIYLHDNRLNG  225 (409)
Q Consensus       149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~--~L~l~~n~l~~  225 (409)
                      +|.+++..|..+.++++|++|++++|.+.+.....+..+++|++|++++|.+++..+ .+..+++|+  .|++++|.+++
T Consensus       114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~  193 (606)
T 3t6q_A          114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG  193 (606)
T ss_dssp             TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred             ccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCc
Confidence            999997667788999999999999999987544455558999999999998887766 566666666  66666666653


Q ss_pred             cCchHH--------------------------------------------------------------------------
Q 048551          226 NLPPVI--------------------------------------------------------------------------  231 (409)
Q Consensus       226 ~~p~~~--------------------------------------------------------------------------  231 (409)
                      ..|..+                                                                          
T Consensus       194 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~  273 (606)
T 3t6q_A          194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT  273 (606)
T ss_dssp             ECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTT
T ss_pred             cChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHH
Confidence            322211                                                                          


Q ss_pred             hhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh-hcccCcEEecccCCccccccccccCCh-h
Q 048551          232 GAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA-ATSYSQRLNDDDQNHHGRQQNICYLPT-G  309 (409)
Q Consensus       232 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-l~~l~~~L~l~~n~l~~~~~~l~~ip~-~  309 (409)
                      +..+++|++|++++|.++ .+|..+.++++|++|++++|++++.....+. ++++ +.|++++|.+.      +.+|. .
T Consensus       274 ~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~~~------~~~~~~~  345 (606)
T 3t6q_A          274 FHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL-THLSIKGNTKR------LELGTGC  345 (606)
T ss_dssp             TTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTC-SEEECCSCSSC------CBCCSST
T ss_pred             hccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcC-CEEECCCCCcc------cccchhh
Confidence            124555666666666655 4555556666666666666666554322222 3333 56666666554      23332 2


Q ss_pred             ccCCCCCCccc---------------cCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC--CCCC
Q 048551          310 ISNLVNLDSLA---------------TDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK--GVFN  371 (409)
Q Consensus       310 ~~~l~~L~~L~---------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~--~~~~  371 (409)
                      +..+++|++|+               +.++++|++|++++|++++..|..+..+++|++|++ +|.+.+..+..  ..++
T Consensus       346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  425 (606)
T 3t6q_A          346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH  425 (606)
T ss_dssp             TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred             hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence            44444554444               234455555555555555555555555555555555 45554443322  3445


Q ss_pred             CCCeecccCCCCceecCC
Q 048551          372 NKTRISLAGNGKLCGGFD  389 (409)
Q Consensus       372 ~L~~L~l~~Np~l~g~~p  389 (409)
                      +|+.|++++| .+.+.+|
T Consensus       426 ~L~~L~l~~n-~l~~~~~  442 (606)
T 3t6q_A          426 LLKVLNLSHS-LLDISSE  442 (606)
T ss_dssp             TCCEEECTTC-CCBTTCT
T ss_pred             cCCEEECCCC-ccCCcCH
Confidence            5555555555 3443333

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=6.2e-37  Score=309.34  Aligned_cols=307  Identities=17%  Similarity=0.130  Sum_probs=178.5

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC  148 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  148 (409)
                      ++++|++++|++++..|..|..+++|++|++++|++++..|..|..+++|++|++++|.+++..|..++.+++|++|+++
T Consensus        27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  106 (549)
T 2z81_A           27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM  106 (549)
T ss_dssp             TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred             CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence            45666666666665555556666666666666666665555556666666666666666664444445566666666666


Q ss_pred             cccccc-cCCccccCCCCCcEEeCCCCCCCCCCC-CCCCCCCCCcEEEccCCcCcccCc-ccCC----------------
Q 048551          149 VIKLTG-QLPASIQNLSSHLEADSNRNNFGGKIP-ESPGQLRSLFYLNVGGNQFSGMFL-PVYN----------------  209 (409)
Q Consensus       149 ~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~-~~~~----------------  209 (409)
                      +|.+++ ..|..++++++|++|++++|.+.+.+| ..+.++++|++|++++|.+++..+ .+..                
T Consensus       107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~  186 (549)
T 2z81_A          107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF  186 (549)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT
T ss_pred             CCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccc
Confidence            665553 234445555555555555555222222 344445555555555554444332 2221                


Q ss_pred             --------CCCCcEEEeecCcCcc--------------------------------------------------------
Q 048551          210 --------LSSLEMIYLHDNRLNG--------------------------------------------------------  225 (409)
Q Consensus       210 --------l~~L~~L~l~~n~l~~--------------------------------------------------------  225 (409)
                              +++|+.|++++|.+++                                                        
T Consensus       187 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~  266 (549)
T 2z81_A          187 LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL  266 (549)
T ss_dssp             HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECC
T ss_pred             cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccc
Confidence                    2333333333333321                                                        


Q ss_pred             ---------------------------------------------------------cCchHHhhCCCccceeecccccc
Q 048551          226 ---------------------------------------------------------NLPPVIGAKLPNLRKIVIALNNF  248 (409)
Q Consensus       226 ---------------------------------------------------------~~p~~~~~~l~~L~~L~L~~n~l  248 (409)
                                                                               .+|..++..+++|++|++++|++
T Consensus       267 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l  346 (549)
T 2z81_A          267 GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM  346 (549)
T ss_dssp             SCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCC
T ss_pred             ccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCcc
Confidence                                                                     34444433566777777777777


Q ss_pred             ccccch---hhhcCCCCCEEEcccCcCccccc--hhhh-hcccCcEEecccCCccccccccccCChhccCCCCCCcccc-
Q 048551          249 TGPLPD---SFSNASNRERLELSYNQFRGKSI--WRSA-ATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLAT-  321 (409)
Q Consensus       249 ~~~~p~---~l~~l~~L~~L~Ls~N~l~~~~~--~~~~-l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~-  321 (409)
                      ++.+|.   .++.+++|++|++++|++++.+.  ..+. ++++ +.|++++|.++       .+|..+..+++|++|++ 
T Consensus       347 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L-~~L~Ls~N~l~-------~lp~~~~~~~~L~~L~Ls  418 (549)
T 2z81_A          347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL-TSLDISRNTFH-------PMPDSCQWPEKMRFLNLS  418 (549)
T ss_dssp             CHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTC-CEEECTTCCCC-------CCCSCCCCCTTCCEEECT
T ss_pred             ccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCC-CEEECCCCCCc-------cCChhhcccccccEEECC
Confidence            665543   25666777777777777766542  1122 4445 77777777776       56665555555555552 


Q ss_pred             -----------------------------CCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-CCC
Q 048551          322 -----------------------------DSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-GVF  370 (409)
Q Consensus       322 -----------------------------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~~~  370 (409)
                                                   ..+++|++|++++|+|+ .+|. ...+++|++|++ +|++++..|.. ..+
T Consensus       419 ~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  496 (549)
T 2z81_A          419 STGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRL  496 (549)
T ss_dssp             TSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGC
T ss_pred             CCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcC
Confidence                                         24667777777777777 4555 356778888888 77777766654 667


Q ss_pred             CCCCeecccCCCCce
Q 048551          371 NNKTRISLAGNGKLC  385 (409)
Q Consensus       371 ~~L~~L~l~~Np~l~  385 (409)
                      ++|+.|++++||+.|
T Consensus       497 ~~L~~L~l~~N~~~~  511 (549)
T 2z81_A          497 TSLQKIWLHTNPWDC  511 (549)
T ss_dssp             TTCCEEECCSSCBCC
T ss_pred             cccCEEEecCCCccC
Confidence            888888888887665

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.5e-37  Score=319.04  Aligned_cols=226  Identities=19%  Similarity=0.214  Sum_probs=183.0

Q ss_pred             cCCCcEEEecCCCCccc-----------------cCcccc--CCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCc
Q 048551           67 CASLRFINIADNGVQGE-----------------IPNELG--NLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNI  127 (409)
Q Consensus        67 c~~l~~L~L~~n~l~~~-----------------~p~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  127 (409)
                      +.++++|+|++|.+++.                 +|..++  ++++|++|++++|.+.+.+|..+.++++|++|++++|+
T Consensus       205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  284 (636)
T 4eco_A          205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR  284 (636)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred             ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence            34899999999999985                 999999  99999999999999999999999999999999999998


Q ss_pred             -CCc-cCCcccCCC------CCCcEEEeecccccccCCc--cccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccC
Q 048551          128 -LAG-EIPAEIGNL------FKLEKLSFCVIKLTGQLPA--SIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGG  197 (409)
Q Consensus       128 -l~~-~~p~~~~~l------~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  197 (409)
                       +++ .+|..++.+      ++|++|++++|.++ .+|.  .++++++|++|++++|.+.|.+| .+..+++|++|++++
T Consensus       285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~  362 (636)
T 4eco_A          285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY  362 (636)
T ss_dssp             TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCS
T ss_pred             CCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCC
Confidence             988 788888776      89999999999998 8888  89999999999999999988888 788888888888888


Q ss_pred             CcCcccCcccCCCCC-CcEEEeecCcCcccCchHHhhCC--Cccceeeccccccccccchhhh-------cCCCCCEEEc
Q 048551          198 NQFSGMFLPVYNLSS-LEMIYLHDNRLNGNLPPVIGAKL--PNLRKIVIALNNFTGPLPDSFS-------NASNRERLEL  267 (409)
Q Consensus       198 n~l~~~~~~~~~l~~-L~~L~l~~n~l~~~~p~~~~~~l--~~L~~L~L~~n~l~~~~p~~l~-------~l~~L~~L~L  267 (409)
                      |.++..+..+.++++ |+.|++++|.++ .+|..+. .+  ++|++|++++|.+++..|..+.       .+++|++|++
T Consensus       363 N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~L  440 (636)
T 4eco_A          363 NQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFD-AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL  440 (636)
T ss_dssp             SEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCC-TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEEC
T ss_pred             CccccccHhhhhhcccCcEEEccCCcCc-ccchhhh-hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEEC
Confidence            888855447778888 888888888887 7776654 33  3677777777777777776666       5667777777


Q ss_pred             ccCcCccccchhhh-hcccCcEEecccCCcc
Q 048551          268 SYNQFRGKSIWRSA-ATSYSQRLNDDDQNHH  297 (409)
Q Consensus       268 s~N~l~~~~~~~~~-l~~l~~~L~l~~n~l~  297 (409)
                      ++|++++.+...+. ++++ +.|++++|.++
T Consensus       441 s~N~l~~lp~~~~~~l~~L-~~L~Ls~N~l~  470 (636)
T 4eco_A          441 SNNQISKFPKELFSTGSPL-SSINLMGNMLT  470 (636)
T ss_dssp             CSSCCCSCCTHHHHTTCCC-SEEECCSSCCS
T ss_pred             cCCccCcCCHHHHccCCCC-CEEECCCCCCC
Confidence            77777655433333 3444 66666666665

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3e-35  Score=300.62  Aligned_cols=315  Identities=19%  Similarity=0.163  Sum_probs=197.2

Q ss_pred             CCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551           68 ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF  147 (409)
Q Consensus        68 ~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  147 (409)
                      .++++|++++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..+..++++++|++|++
T Consensus        56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  135 (606)
T 3vq2_A           56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV  135 (606)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred             ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence            36666666666666555666666666666666666666555666666666666666666666444455666666666666


Q ss_pred             ecccccc-cCCccccCCCCCcEEeCCCCCCCCCCCCCCC-----------------------------------------
Q 048551          148 CVIKLTG-QLPASIQNLSSHLEADSNRNNFGGKIPESPG-----------------------------------------  185 (409)
Q Consensus       148 ~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~-----------------------------------------  185 (409)
                      ++|.+++ .+|..++++++|++|++++|.+++..+..++                                         
T Consensus       136 ~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~  215 (606)
T 3vq2_A          136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNF  215 (606)
T ss_dssp             CSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCC
T ss_pred             CCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCc
Confidence            6666654 3566666666666666666665543332221                                         


Q ss_pred             --------------------------------------------------------------------------------
Q 048551          186 --------------------------------------------------------------------------------  185 (409)
Q Consensus       186 --------------------------------------------------------------------------------  185 (409)
                                                                                                      
T Consensus       216 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  295 (606)
T 3vq2_A          216 NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV  295 (606)
T ss_dssp             SCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESC
T ss_pred             cchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCc
Confidence                                                                                            


Q ss_pred             ---------CCCCCcEEEccCCcCcccC-------------------c-ccCCCCCCcEEEeecCcCccc--CchHHhhC
Q 048551          186 ---------QLRSLFYLNVGGNQFSGMF-------------------L-PVYNLSSLEMIYLHDNRLNGN--LPPVIGAK  234 (409)
Q Consensus       186 ---------~l~~L~~L~l~~n~l~~~~-------------------~-~~~~l~~L~~L~l~~n~l~~~--~p~~~~~~  234 (409)
                               .+++|++|++++|.+...+                   . .+..+++|+.|++++|.+++.  +|..+. .
T Consensus       296 ~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~-~  374 (606)
T 3vq2_A          296 SIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDL-G  374 (606)
T ss_dssp             CCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHH-C
T ss_pred             cchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhc-c
Confidence                     1112222222222221110                   0 223456677777777777643  356665 7


Q ss_pred             CCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccc-hhhh-hcccCcEEecccCCcccc-------cccc--
Q 048551          235 LPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSI-WRSA-ATSYSQRLNDDDQNHHGR-------QQNI--  303 (409)
Q Consensus       235 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~-l~~l~~~L~l~~n~l~~~-------~~~l--  303 (409)
                      +++|++|++++|.+++ +|..+..+++|+.|++++|++.+... ..+. ++++ +.|++++|.+.+.       ++.+  
T Consensus       375 ~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~  452 (606)
T 3vq2_A          375 TNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL-LYLDISYTNTKIDFDGIFLGLTSLNT  452 (606)
T ss_dssp             CSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC-CEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred             CCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccC-CEEECcCCCCCccchhhhcCCCCCCE
Confidence            7778888888777763 45666777777777777777766542 2222 3344 5666666655431       0111  


Q ss_pred             ---------c-cCChhccCCCCCCccc-------------cCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-ecc
Q 048551          304 ---------C-YLPTGISNLVNLDSLA-------------TDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNH  359 (409)
Q Consensus       304 ---------~-~ip~~~~~l~~L~~L~-------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~  359 (409)
                               + .+|..+..+++|+.|+             +.++++|++|++++|++++..|..+..+++|++|++ +|+
T Consensus       453 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~  532 (606)
T 3vq2_A          453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR  532 (606)
T ss_dssp             EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred             EECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence                     2 2566677778888777             556788888888888888877888888888888888 777


Q ss_pred             ceecCCCC-CCCC-CCCeecccCCCCcee
Q 048551          360 FDGEVPTK-GVFN-NKTRISLAGNGKLCG  386 (409)
Q Consensus       360 l~~~~p~~-~~~~-~L~~L~l~~Np~l~g  386 (409)
                      ++ .+|.. ..++ +|+.+++++||+.|+
T Consensus       533 l~-~~p~~~~~l~~~L~~l~l~~N~~~c~  560 (606)
T 3vq2_A          533 IE-TSKGILQHFPKSLAFFNLTNNSVACI  560 (606)
T ss_dssp             CC-CEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred             Cc-ccCHhHhhhcccCcEEEccCCCcccC
Confidence            76 45554 5565 588899999988773

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2e-35  Score=301.81  Aligned_cols=137  Identities=18%  Similarity=0.129  Sum_probs=128.0

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC  148 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  148 (409)
                      ++++|++++|++++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|+++++|++|+++
T Consensus        33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~  112 (606)
T 3vq2_A           33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV  112 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECT
T ss_pred             CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEcc
Confidence            79999999999998888899999999999999999998889999999999999999999998779999999999999999


Q ss_pred             cccccccCCccccCCCCCcEEeCCCCCCCC-CCCCCCCCCCCCcEEEccCCcCcccCc
Q 048551          149 VIKLTGQLPASIQNLSSHLEADSNRNNFGG-KIPESPGQLRSLFYLNVGGNQFSGMFL  205 (409)
Q Consensus       149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~  205 (409)
                      +|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+
T Consensus       113 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~  170 (606)
T 3vq2_A          113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV  170 (606)
T ss_dssp             TSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred             CCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence            999997776889999999999999999986 578999999999999999999887655

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.6e-34  Score=295.13  Aligned_cols=109  Identities=17%  Similarity=0.074  Sum_probs=63.3

Q ss_pred             CCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551           68 ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF  147 (409)
Q Consensus        68 ~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  147 (409)
                      .+|++|++++|++++..|..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..++.+++|++|++
T Consensus        57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L  136 (606)
T 3t6q_A           57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL  136 (606)
T ss_dssp             TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEEC
T ss_pred             ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEEC
Confidence            36677777777776666666777777777777777666666666666666666666666666443444555555555555


Q ss_pred             ecccccccCCccccCCCCCcEEeCCCCCC
Q 048551          148 CVIKLTGQLPASIQNLSSHLEADSNRNNF  176 (409)
Q Consensus       148 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l  176 (409)
                      ++|.+++..+..+..+++|++|++++|.+
T Consensus       137 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  165 (606)
T 3t6q_A          137 GSNHISSIKLPKGFPTEKLKVLDFQNNAI  165 (606)
T ss_dssp             CSSCCCCCCCCTTCCCTTCCEEECCSSCC
T ss_pred             CCCcccccCcccccCCcccCEEEcccCcc
Confidence            55555532222222244444444444433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.5e-34  Score=299.36  Aligned_cols=227  Identities=15%  Similarity=0.136  Sum_probs=172.6

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC  148 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  148 (409)
                      ++++|++++|++++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..+..|+.+++|++|+++
T Consensus        26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~  105 (680)
T 1ziw_A           26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM  105 (680)
T ss_dssp             TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred             CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECC
Confidence            78999999999997666779999999999999999998888889999999999999999985444568999999999999


Q ss_pred             cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-c--cCCCCCCcEEEeecCcCcc
Q 048551          149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-P--VYNLSSLEMIYLHDNRLNG  225 (409)
Q Consensus       149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~--~~~l~~L~~L~l~~n~l~~  225 (409)
                      +|.+++..|..|+++++|++|++++|.+++..|..+.++++|++|++++|.+++..+ .  ...+++|+.|++++|.+++
T Consensus       106 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~  185 (680)
T 1ziw_A          106 SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE  185 (680)
T ss_dssp             SSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCC
T ss_pred             CCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccc
Confidence            999987667789999999999999999998888888899999999999999888766 3  3356788888888888875


Q ss_pred             cCchHHhhCC---------------------------CccceeeccccccccccchhhhcCCC--CCEEEcccCcCcccc
Q 048551          226 NLPPVIGAKL---------------------------PNLRKIVIALNNFTGPLPDSFSNASN--RERLELSYNQFRGKS  276 (409)
Q Consensus       226 ~~p~~~~~~l---------------------------~~L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~Ls~N~l~~~~  276 (409)
                      ..|..+. .+                           ++|++|++++|.+++..|..+..++.  |++|++++|++++.+
T Consensus       186 ~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~  264 (680)
T 1ziw_A          186 FSPGCFH-AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG  264 (680)
T ss_dssp             BCTTGGG-GSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred             cChhhhh-hhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence            5444332 22                           34555666666666555555555533  666666666666554


Q ss_pred             chhhh-hcccCcEEecccCCcc
Q 048551          277 IWRSA-ATSYSQRLNDDDQNHH  297 (409)
Q Consensus       277 ~~~~~-l~~l~~~L~l~~n~l~  297 (409)
                      ...+. ++++ +.|++++|.+.
T Consensus       265 ~~~~~~l~~L-~~L~L~~n~l~  285 (680)
T 1ziw_A          265 NDSFAWLPQL-EYFFLEYNNIQ  285 (680)
T ss_dssp             TTTTTTCTTC-CEEECCSCCBS
T ss_pred             cccccCcccc-cEeeCCCCccC
Confidence            33333 3333 56666666555

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.5e-34  Score=294.80  Aligned_cols=317  Identities=14%  Similarity=0.077  Sum_probs=243.4

Q ss_pred             CCCCCCCCCCCCCCC----ceeeecC--------------------CCcEEEecCCCCccccCccccCCCCCCEEEccCC
Q 048551           47 LEVTSSLTNSVNLCE----WTGVTCA--------------------SLRFINIADNGVQGEIPNELGNLVRLEKLILANN  102 (409)
Q Consensus        47 ~~~~~~w~~~~~~c~----~~g~~c~--------------------~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  102 (409)
                      +..+++|.++.+||.    |.++.|+                    +++.+++++|.+....+..+..+++|++|++++|
T Consensus         6 ~~~l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n   85 (597)
T 3oja_B            6 RYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL   85 (597)
T ss_dssp             -----CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS
T ss_pred             cccccCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC
Confidence            345677887766663    6554443                    6789999999999555556889999999999999


Q ss_pred             cccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCC
Q 048551          103 SFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPE  182 (409)
Q Consensus       103 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~  182 (409)
                      .+++..|..|..+++|++|++++|.+++..|..|+.+++|++|++++|.+++..+..|.++++|++|++++|.+.+..|.
T Consensus        86 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~  165 (597)
T 3oja_B           86 QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD  165 (597)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred             CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChh
Confidence            99988888999999999999999999987778899999999999999999955555579999999999999999988888


Q ss_pred             CCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCC
Q 048551          183 SPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNR  262 (409)
Q Consensus       183 ~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  262 (409)
                      .+.++++|++|++++|.+++..  +..+++|+.|++++|.+++ ++     ..++|+.|++++|.++...+ .+  .++|
T Consensus       166 ~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~-l~-----~~~~L~~L~ls~n~l~~~~~-~~--~~~L  234 (597)
T 3oja_B          166 TFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST-LA-----IPIAVEELDASHNSINVVRG-PV--NVEL  234 (597)
T ss_dssp             TTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSE-EE-----CCTTCSEEECCSSCCCEEEC-SC--CSCC
T ss_pred             hhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccc-cc-----CCchhheeeccCCccccccc-cc--CCCC
Confidence            9999999999999999998763  4566778888888887763 21     34556677777776663322 21  2466


Q ss_pred             CEEEcccCcCccccchhhh-hcccCcEEecccCCccccccccccCChhccCCCCCCccc------------cCCCCCCCE
Q 048551          263 ERLELSYNQFRGKSIWRSA-ATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLA------------TDSLKSIEE  329 (409)
Q Consensus       263 ~~L~Ls~N~l~~~~~~~~~-l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~------------~~~l~~L~~  329 (409)
                      +.|++++|.+++..  .+. ++++ +.|++++|.+.      +..|..+..+++|+.|+            +..+++|+.
T Consensus       235 ~~L~L~~n~l~~~~--~l~~l~~L-~~L~Ls~N~l~------~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~  305 (597)
T 3oja_B          235 TILKLQHNNLTDTA--WLLNYPGL-VEVDLSYNELE------KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKV  305 (597)
T ss_dssp             CEEECCSSCCCCCG--GGGGCTTC-SEEECCSSCCC------EEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCE
T ss_pred             CEEECCCCCCCCCh--hhccCCCC-CEEECCCCccC------CCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcE
Confidence            66666666666542  111 3334 66666666666      44555666666666666            234789999


Q ss_pred             EECcCCccccccchhhhcCCCCcEEEe-eccceecCCCCCCCCCCCeecccCCCCcee
Q 048551          330 LDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTKGVFNNKTRISLAGNGKLCG  386 (409)
Q Consensus       330 L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~~~~~~L~~L~l~~Np~l~g  386 (409)
                      |+|++|+++ .+|..+..+++|++|++ +|++.+..+  ..+++|+.|++++||+-|.
T Consensus       306 L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          306 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKL--STHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             EECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCC--CTTCCCSEEECCSSCEEHH
T ss_pred             EECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcCh--hhcCCCCEEEeeCCCCCCh
Confidence            999999999 68888999999999999 888875532  4789999999999987664

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.8e-34  Score=279.06  Aligned_cols=295  Identities=14%  Similarity=0.097  Sum_probs=229.4

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC  148 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  148 (409)
                      +++.++++++.++...+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..++.+++|++|+++
T Consensus        46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  125 (390)
T 3o6n_A           46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE  125 (390)
T ss_dssp             CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence            78999999999984444457899999999999999998777899999999999999999997777889999999999999


Q ss_pred             cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCc
Q 048551          149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLP  228 (409)
Q Consensus       149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p  228 (409)
                      +|.++...+..+.++++|++|++++|.+.+..+..+.++++|++|++++|.+++.  .+..+++|+.+++++|.+++ ++
T Consensus       126 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n~l~~-~~  202 (390)
T 3o6n_A          126 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLST-LA  202 (390)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSSCCSE-EE
T ss_pred             CCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceeecccccccc-cC
Confidence            9999944444468999999999999999988888899999999999999999876  34566777777777777762 21


Q ss_pred             hHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh-hcccCcEEecccCCccccccccccCC
Q 048551          229 PVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA-ATSYSQRLNDDDQNHHGRQQNICYLP  307 (409)
Q Consensus       229 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-l~~l~~~L~l~~n~l~~~~~~l~~ip  307 (409)
                           ..++|++|++++|.++.. |..  ..++|+.|++++|++++..  .+. ++++ +.|++++|.+.      +..|
T Consensus       203 -----~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~~--~l~~l~~L-~~L~Ls~n~l~------~~~~  265 (390)
T 3o6n_A          203 -----IPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDTA--WLLNYPGL-VEVDLSYNELE------KIMY  265 (390)
T ss_dssp             -----CCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCCG--GGGGCTTC-SEEECCSSCCC------EEES
T ss_pred             -----CCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCcccH--HHcCCCCc-cEEECCCCcCC------CcCh
Confidence                 335566666666666633 322  2356666666666666542  111 3333 66666666666      3445


Q ss_pred             hhccCCCCCCccc------------cCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCCCCCCCCC
Q 048551          308 TGISNLVNLDSLA------------TDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTKGVFNNKT  374 (409)
Q Consensus       308 ~~~~~l~~L~~L~------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~~~~~~L~  374 (409)
                      ..+..+++|+.|+            +..+++|++|++++|+++ .+|..+..+++|++|++ +|.+++. + ...+++|+
T Consensus       266 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~-~~~~~~L~  342 (390)
T 3o6n_A          266 HPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLK  342 (390)
T ss_dssp             GGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCS
T ss_pred             hHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C-chhhccCC
Confidence            5566666666666            335789999999999999 67888899999999999 8887654 3 25789999


Q ss_pred             eecccCCCCcee
Q 048551          375 RISLAGNGKLCG  386 (409)
Q Consensus       375 ~L~l~~Np~l~g  386 (409)
                      .|++++||+-|.
T Consensus       343 ~L~l~~N~~~~~  354 (390)
T 3o6n_A          343 NLTLSHNDWDCN  354 (390)
T ss_dssp             EEECCSSCEEHH
T ss_pred             EEEcCCCCccch
Confidence            999999987773

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=5e-35  Score=293.54  Aligned_cols=144  Identities=26%  Similarity=0.284  Sum_probs=118.7

Q ss_pred             CCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccc--hhhh-hcccCcEEecccCCccccccccccCChh-
Q 048551          234 KLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSI--WRSA-ATSYSQRLNDDDQNHHGRQQNICYLPTG-  309 (409)
Q Consensus       234 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~-l~~l~~~L~l~~n~l~~~~~~l~~ip~~-  309 (409)
                      .+++|++|++++|.+++..|..+..+++|++|++++|++++.+.  ..+. ++++ +.|++++|.+.      +.+|.. 
T Consensus       322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L-~~L~Ls~N~l~------~~l~~~~  394 (520)
T 2z7x_B          322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL-QQLDISQNSVS------YDEKKGD  394 (520)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTC-CEEECCSSCCB------CCGGGCS
T ss_pred             hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCC-CEEECCCCcCC------cccccch
Confidence            67889999999999998888899999999999999999987542  2233 5566 99999999998      447764 


Q ss_pred             ccCCCCCCccccCC----------C-CCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC--CCCCCCCe
Q 048551          310 ISNLVNLDSLATDS----------L-KSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK--GVFNNKTR  375 (409)
Q Consensus       310 ~~~l~~L~~L~~~~----------l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~--~~~~~L~~  375 (409)
                      +..+++|+.|++++          + ++|++|++++|+|+ .+|..+..+++|++|++ +|+++ .+|..  ..+++|+.
T Consensus       395 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~  472 (520)
T 2z7x_B          395 CSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQK  472 (520)
T ss_dssp             CCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             hccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccE
Confidence            67788888888443          2 69999999999999 78888889999999999 88887 46653  67899999


Q ss_pred             ecccCCCCcee
Q 048551          376 ISLAGNGKLCG  386 (409)
Q Consensus       376 L~l~~Np~l~g  386 (409)
                      |++++||.-|.
T Consensus       473 L~l~~N~~~c~  483 (520)
T 2z7x_B          473 IWLHTNPWDCS  483 (520)
T ss_dssp             EECCSSCBCCC
T ss_pred             EECcCCCCccc
Confidence            99999987773

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5.3e-35  Score=306.35  Aligned_cols=303  Identities=18%  Similarity=0.189  Sum_probs=236.2

Q ss_pred             cCCCcEEEecCCCCcc-----------------ccCcccc--CCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCc
Q 048551           67 CASLRFINIADNGVQG-----------------EIPNELG--NLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNI  127 (409)
Q Consensus        67 c~~l~~L~L~~n~l~~-----------------~~p~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  127 (409)
                      +.+|++|+|++|.+++                 .+|..++  ++++|++|+|++|.+.+.+|..|.++++|++|++++|+
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~  526 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR  526 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence            3489999999999998                 3888887  99999999999999999999999999999999999998


Q ss_pred             -CCc-cCCcccCCC-------CCCcEEEeecccccccCCc--cccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEcc
Q 048551          128 -LAG-EIPAEIGNL-------FKLEKLSFCVIKLTGQLPA--SIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVG  196 (409)
Q Consensus       128 -l~~-~~p~~~~~l-------~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  196 (409)
                       +++ .+|..++.+       ++|++|++++|.++ .+|.  .++++++|++|++++|.++ .+| .++.+++|++|+++
T Consensus       527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls  603 (876)
T 4ecn_A          527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLD  603 (876)
T ss_dssp             TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECC
T ss_pred             CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECc
Confidence             887 777655544       48999999999888 7887  8888888888888888888 777 78888888888888


Q ss_pred             CCcCcccCcccCCCCC-CcEEEeecCcCcccCchHHhhCCC-------------------------------ccceeecc
Q 048551          197 GNQFSGMFLPVYNLSS-LEMIYLHDNRLNGNLPPVIGAKLP-------------------------------NLRKIVIA  244 (409)
Q Consensus       197 ~n~l~~~~~~~~~l~~-L~~L~l~~n~l~~~~p~~~~~~l~-------------------------------~L~~L~L~  244 (409)
                      +|.++..+..+.++++ |+.|++++|.++ .+|..+. .++                               +|+.|+++
T Consensus       604 ~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~-~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls  681 (876)
T 4ecn_A          604 YNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFN-AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS  681 (876)
T ss_dssp             SSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCC-TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECC
T ss_pred             CCccccchHHHhhccccCCEEECcCCCCC-cCchhhh-ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEcc
Confidence            8888854447777777 888888888777 6665443 222                               44455555


Q ss_pred             ccccccccchh-hhcCCCCCEEEcccCcCccccchhhh-h-------cccCcEEecccCCccccccccccCChhcc--CC
Q 048551          245 LNNFTGPLPDS-FSNASNRERLELSYNQFRGKSIWRSA-A-------TSYSQRLNDDDQNHHGRQQNICYLPTGIS--NL  313 (409)
Q Consensus       245 ~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~~~~~~-l-------~~l~~~L~l~~n~l~~~~~~l~~ip~~~~--~l  313 (409)
                      +|.++ .+|.. +..+++|+.|++++|+++..+...+. .       +++ +.|++++|+++       .+|..+.  .+
T Consensus       682 ~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L-~~L~Ls~N~L~-------~lp~~l~~~~l  752 (876)
T 4ecn_A          682 YNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL-TTIDLRFNKLT-------SLSDDFRATTL  752 (876)
T ss_dssp             SSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGC-CEEECCSSCCC-------CCCGGGSTTTC
T ss_pred             CCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCc-cEEECCCCCCc-------cchHHhhhccC
Confidence            55554 23333 23566777777777777654432222 1       144 77788877776       7888887  89


Q ss_pred             CCCCccc------------cCCCCCCCEEECcC------CccccccchhhhcCCCCcEEEe-eccceecCCCCCCCCCCC
Q 048551          314 VNLDSLA------------TDSLKSIEELDLSS------NNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTKGVFNNKT  374 (409)
Q Consensus       314 ~~L~~L~------------~~~l~~L~~L~Ls~------N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~~~~~~L~  374 (409)
                      ++|+.|+            +.++++|+.|+|++      |++.+.+|..+.++++|++|+| +|++ +.+|.. ..++|+
T Consensus       753 ~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~  830 (876)
T 4ecn_A          753 PYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLY  830 (876)
T ss_dssp             TTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSC
T ss_pred             CCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCC
Confidence            9999998            44678999999976      8888899999999999999999 7888 888885 447999


Q ss_pred             eecccCCCCce
Q 048551          375 RISLAGNGKLC  385 (409)
Q Consensus       375 ~L~l~~Np~l~  385 (409)
                      .|++++||...
T Consensus       831 ~LdLs~N~l~~  841 (876)
T 4ecn_A          831 ILDIADNPNIS  841 (876)
T ss_dssp             EEECCSCTTCE
T ss_pred             EEECCCCCCCc
Confidence            99999998654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.3e-34  Score=283.79  Aligned_cols=307  Identities=18%  Similarity=0.150  Sum_probs=245.0

Q ss_pred             cEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccC-CcccCCCCCCcEEEeec
Q 048551           71 RFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEI-PAEIGNLFKLEKLSFCV  149 (409)
Q Consensus        71 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~L~~  149 (409)
                      +.++.++++++ .+|. +.  ++|++|++++|.+++..|..|.++++|++|++++|.+.+.+ +..|..+++|++|++++
T Consensus        13 ~~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           13 YNAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             TEEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             cccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            45666778887 6776 33  78999999999999888999999999999999999997555 56799999999999999


Q ss_pred             ccccccCCccccCCCCCcEEeCCCCCCCCCCCC--CCCCCCCCcEEEccCCcCcccCc-c-cCCCCCCcEEEeecCcCcc
Q 048551          150 IKLTGQLPASIQNLSSHLEADSNRNNFGGKIPE--SPGQLRSLFYLNVGGNQFSGMFL-P-VYNLSSLEMIYLHDNRLNG  225 (409)
Q Consensus       150 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~-~-~~~l~~L~~L~l~~n~l~~  225 (409)
                      |.+++..|..+.++++|++|++++|.+++..+.  .+..+++|++|++++|.+++..+ . +.++++|++|++++|.+++
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence            999988899999999999999999999875544  48999999999999999999876 4 8899999999999999997


Q ss_pred             cCchHHhhCC--Cccceeeccccccccccchh--------hhcCCCCCEEEcccCcCccccchhhh--------------
Q 048551          226 NLPPVIGAKL--PNLRKIVIALNNFTGPLPDS--------FSNASNRERLELSYNQFRGKSIWRSA--------------  281 (409)
Q Consensus       226 ~~p~~~~~~l--~~L~~L~L~~n~l~~~~p~~--------l~~l~~L~~L~Ls~N~l~~~~~~~~~--------------  281 (409)
                      ..+..+. .+  .+|+.|++++|.+.+..+..        +..+++|++|++++|++++.....+.              
T Consensus       169 ~~~~~l~-~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~  247 (455)
T 3v47_A          169 ICEEDLL-NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS  247 (455)
T ss_dssp             CCTTTSG-GGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred             cChhhhh-ccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence            6666554 33  45666666666665433222        12345566666666655543211110              


Q ss_pred             --------------------------hcccCcEEecccCCccccccccccCChhccCCCCCCccc-------------cC
Q 048551          282 --------------------------ATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLA-------------TD  322 (409)
Q Consensus       282 --------------------------l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~-------------~~  322 (409)
                                                ..++ +.|++++|.+.      +.+|..+..+++|+.|+             |.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~L~l~~n~l~------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  320 (455)
T 3v47_A          248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGV-KTCDLSKSKIF------ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW  320 (455)
T ss_dssp             TCTTTSCCTTCCSSCCCCTTTTGGGTTSCC-CEEECCSSCCC------EECTTTTTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             cccccccccchhhhccCcccccccccccCc-eEEEecCcccc------ccchhhcccCCCCCEEECCCCcccccChhHhc
Confidence                                      1233 78888888887      56677788888888888             56


Q ss_pred             CCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-CCCCCCCeecccCCCCceecCCC
Q 048551          323 SLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-GVFNNKTRISLAGNGKLCGGFDG  390 (409)
Q Consensus       323 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~~~~~L~~L~l~~Np~l~g~~p~  390 (409)
                      ++++|++|++++|++++..|..+..+++|++|++ +|++.+..|.. ..+++|+.|++++| .+.+..+.
T Consensus       321 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~  389 (455)
T 3v47_A          321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDG  389 (455)
T ss_dssp             TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTT
T ss_pred             CcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCHh
Confidence            7899999999999999888999999999999999 89998887865 78999999999999 67765443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.5e-34  Score=292.85  Aligned_cols=303  Identities=15%  Similarity=0.116  Sum_probs=246.3

Q ss_pred             CCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551           68 ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF  147 (409)
Q Consensus        68 ~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  147 (409)
                      .++++|++++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|++++|.++ .+|..  .+++|++|++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L  128 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL  128 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence            48999999999999777789999999999999999999888899999999999999999999 67766  7999999999


Q ss_pred             ecccccc-cCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCC--cEEEccCCcC--cccCc-ccCCC-----------
Q 048551          148 CVIKLTG-QLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSL--FYLNVGGNQF--SGMFL-PVYNL-----------  210 (409)
Q Consensus       148 ~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~l~~n~l--~~~~~-~~~~l-----------  210 (409)
                      ++|++++ ..|..++++++|++|++++|.+.+.   .+..+++|  ++|++++|.+  ++..+ .+..+           
T Consensus       129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~  205 (562)
T 3a79_B          129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP  205 (562)
T ss_dssp             CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred             CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence            9999986 3468899999999999999998753   45555566  8888888877  44333 22221           


Q ss_pred             ----------------------------------------------------------------------CCCcEEEeec
Q 048551          211 ----------------------------------------------------------------------SSLEMIYLHD  220 (409)
Q Consensus       211 ----------------------------------------------------------------------~~L~~L~l~~  220 (409)
                                                                                            ++|++|++++
T Consensus       206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~  285 (562)
T 3a79_B          206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN  285 (562)
T ss_dssp             SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEE
T ss_pred             ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEec
Confidence                                                                                  1677777777


Q ss_pred             CcCcccCchHHh----------------------------------------------------hCCCccceeecccccc
Q 048551          221 NRLNGNLPPVIG----------------------------------------------------AKLPNLRKIVIALNNF  248 (409)
Q Consensus       221 n~l~~~~p~~~~----------------------------------------------------~~l~~L~~L~L~~n~l  248 (409)
                      |.++|.+|..++                                                    ..+++|++|++++|.+
T Consensus       286 n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l  365 (562)
T 3a79_B          286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF  365 (562)
T ss_dssp             EEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCC
T ss_pred             cEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCcc
Confidence            777766665431                                                    3678899999999999


Q ss_pred             ccccchhhhcCCCCCEEEcccCcCccccc--hhhh-hcccCcEEecccCCccccccccccCChh-ccCCCCCCccccC--
Q 048551          249 TGPLPDSFSNASNRERLELSYNQFRGKSI--WRSA-ATSYSQRLNDDDQNHHGRQQNICYLPTG-ISNLVNLDSLATD--  322 (409)
Q Consensus       249 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~-l~~l~~~L~l~~n~l~~~~~~l~~ip~~-~~~l~~L~~L~~~--  322 (409)
                      ++..|..+.++++|++|++++|++++.+.  ..+. ++++ +.|++++|.+.      +.+|.. +..+++|+.|+++  
T Consensus       366 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L-~~L~l~~N~l~------~~~~~~~~~~l~~L~~L~l~~n  438 (562)
T 3a79_B          366 TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL-ETLDVSLNSLN------SHAYDRTCAWAESILVLNLSSN  438 (562)
T ss_dssp             CTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTC-CEEECTTSCCB------SCCSSCCCCCCTTCCEEECCSS
T ss_pred             ccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCC-CEEECCCCcCC------CccChhhhcCcccCCEEECCCC
Confidence            98889999999999999999999998652  2233 5566 99999999998      447654 6677888888843  


Q ss_pred             --------CC-CCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC--CCCCCCCeecccCCCCce
Q 048551          323 --------SL-KSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK--GVFNNKTRISLAGNGKLC  385 (409)
Q Consensus       323 --------~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~--~~~~~L~~L~l~~Np~l~  385 (409)
                              .+ ++|++|++++|+|+ .+|..+..+++|++|++ +|+++ .+|..  ..+++|+.|++++||+.|
T Consensus       439 ~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c  511 (562)
T 3a79_B          439 MLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC  511 (562)
T ss_dssp             CCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred             CCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCC
Confidence                    23 69999999999999 67887779999999999 88887 45553  778999999999999877

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=100.00  E-value=3e-35  Score=277.88  Aligned_cols=271  Identities=20%  Similarity=0.240  Sum_probs=213.9

Q ss_pred             CCHHHHHHHHHHHHhC-CCCCCCCCCC----CCCCCCCCceeeec------------CCCcEEEecCCCCccccCccccC
Q 048551           28 ANETDRLALLAIKSQL-HDPLEVTSSL----TNSVNLCEWTGVTC------------ASLRFINIADNGVQGEIPNELGN   90 (409)
Q Consensus        28 ~~~~~~~~l~~~~~~~-~~~~~~~~~w----~~~~~~c~~~g~~c------------~~l~~L~L~~n~l~~~~p~~~~~   90 (409)
                      +..+++++|+.||+++ .++......|    ....++|.|.|+.|            .+++.|++++|+++ .+|..+..
T Consensus        24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~  102 (328)
T 4fcg_A           24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFR  102 (328)
T ss_dssp             CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGG
T ss_pred             cCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhh
Confidence            4568899999999988 5776666788    45678999999999            37888888888888 77777888


Q ss_pred             CCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEe
Q 048551           91 LVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEAD  170 (409)
Q Consensus        91 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  170 (409)
                      +++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|++.+.+|..+...       
T Consensus       103 l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~-------  173 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST-------  173 (328)
T ss_dssp             GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE-------
T ss_pred             CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc-------
Confidence            888888888888888 77877888888888888888887 677778888888888888877777777655431       


Q ss_pred             CCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeecccccccc
Q 048551          171 SNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTG  250 (409)
Q Consensus       171 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~  250 (409)
                              ..+..+.++++|++|++++|.++..+..+.++++|++|++++|.++ .+|..+. .+++|++|++++|.+.+
T Consensus       174 --------~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~-~l~~L~~L~Ls~n~~~~  243 (328)
T 4fcg_A          174 --------DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIH-HLPKLEELDLRGCTALR  243 (328)
T ss_dssp             --------C-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGG-GCTTCCEEECTTCTTCC
T ss_pred             --------cchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchhhc-cCCCCCEEECcCCcchh
Confidence                    1122345678888888888888755447788888888888888888 5777776 78889999999988888


Q ss_pred             ccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCCCEE
Q 048551          251 PLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEEL  330 (409)
Q Consensus       251 ~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L  330 (409)
                      .+|..+..+++|++|++++|++.+                              .+|..+..           +++|++|
T Consensus       244 ~~p~~~~~l~~L~~L~L~~n~~~~------------------------------~~p~~~~~-----------l~~L~~L  282 (328)
T 4fcg_A          244 NYPPIFGGRAPLKRLILKDCSNLL------------------------------TLPLDIHR-----------LTQLEKL  282 (328)
T ss_dssp             BCCCCTTCCCCCCEEECTTCTTCC------------------------------BCCTTGGG-----------CTTCCEE
T ss_pred             hhHHHhcCCCCCCEEECCCCCchh------------------------------hcchhhhc-----------CCCCCEE
Confidence            888888888999999998887763                              56665543           4667889


Q ss_pred             ECcCCccccccchhhhcCCCCcEEEeecc
Q 048551          331 DLSSNNLSGQLPRLLVNLSFLVLLNLYNH  359 (409)
Q Consensus       331 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~n~  359 (409)
                      ++++|++.+.+|..+.++++|+.+++..+
T Consensus       283 ~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          283 DLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             ECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             eCCCCCchhhccHHHhhccCceEEeCCHH
Confidence            99998888889999999999999988333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.2e-33  Score=280.42  Aligned_cols=296  Identities=20%  Similarity=0.137  Sum_probs=256.5

Q ss_pred             cEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecc
Q 048551           71 RFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVI  150 (409)
Q Consensus        71 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n  150 (409)
                      +.++.++++++ .+|..+.  +++++|+|++|.+++..+..|..+++|++|++++|.+++..|..|+++++|++|++++|
T Consensus        14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            56677778888 7787664  68999999999999888899999999999999999999888999999999999999999


Q ss_pred             cccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccCch
Q 048551          151 KLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLPP  229 (409)
Q Consensus       151 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~  229 (409)
                      .++...+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+ .+.++++|+.|++++|.++ .++.
T Consensus        91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~  169 (477)
T 2id5_A           91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPT  169 (477)
T ss_dssp             CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCH
T ss_pred             cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccCh
Confidence            9996555678999999999999999998889999999999999999999999877 8899999999999999999 5555


Q ss_pred             HHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchh-hhhcccCcEEecccCCccccccccccCCh
Q 048551          230 VIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWR-SAATSYSQRLNDDDQNHHGRQQNICYLPT  308 (409)
Q Consensus       230 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~-~~l~~l~~~L~l~~n~l~~~~~~l~~ip~  308 (409)
                      ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..... +...++ +.|++++|.++       .+|.
T Consensus       170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L-~~L~l~~n~l~-------~~~~  241 (477)
T 2id5_A          170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL-TSLSITHCNLT-------AVPY  241 (477)
T ss_dssp             HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCC-SEEEEESSCCC-------SCCH
T ss_pred             hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccc-cEEECcCCccc-------ccCH
Confidence            44448999999999999999888888999999999999998876654222 223345 99999999988       6664


Q ss_pred             hccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-CCCCCCCeecccCCCCcee
Q 048551          309 GISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-GVFNNKTRISLAGNGKLCG  386 (409)
Q Consensus       309 ~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~~~~~L~~L~l~~Np~l~g  386 (409)
                      ..          +..+++|+.|++++|++++..+..+..+++|++|++ +|++.+..|.. ..+++|+.|++++| .+.+
T Consensus       242 ~~----------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~  310 (477)
T 2id5_A          242 LA----------VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTT  310 (477)
T ss_dssp             HH----------HTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSC
T ss_pred             HH----------hcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCce
Confidence            32          345688899999999999888888999999999999 89999887776 78899999999999 6775


Q ss_pred             cCC
Q 048551          387 GFD  389 (409)
Q Consensus       387 ~~p  389 (409)
                      ..+
T Consensus       311 ~~~  313 (477)
T 2id5_A          311 LEE  313 (477)
T ss_dssp             CCG
T ss_pred             eCH
Confidence            544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.6e-34  Score=288.33  Aligned_cols=313  Identities=19%  Similarity=0.183  Sum_probs=181.9

Q ss_pred             cCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEE
Q 048551           67 CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS  146 (409)
Q Consensus        67 c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  146 (409)
                      |.++++|++++|++++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..+..++.+++|++|+
T Consensus        51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  130 (570)
T 2z63_A           51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN  130 (570)
T ss_dssp             CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEE
T ss_pred             CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEe
Confidence            34677777777777755566677777777777777777665566677777777777777776643333566677777777


Q ss_pred             eecccccc-cCCccccCCCCCcEEeCCCCCCCCCCCCCC-----------------------------------------
Q 048551          147 FCVIKLTG-QLPASIQNLSSHLEADSNRNNFGGKIPESP-----------------------------------------  184 (409)
Q Consensus       147 L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~-----------------------------------------  184 (409)
                      +++|.+++ .+|..++++++|++|++++|.+++..+..+                                         
T Consensus       131 L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n  210 (570)
T 2z63_A          131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN  210 (570)
T ss_dssp             CCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred             cCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccc
Confidence            77777664 356667777777777776666543322222                                         


Q ss_pred             --------------------------------------------------------------------CCCCCCcEEEcc
Q 048551          185 --------------------------------------------------------------------GQLRSLFYLNVG  196 (409)
Q Consensus       185 --------------------------------------------------------------------~~l~~L~~L~l~  196 (409)
                                                                                          ..+++|++|+++
T Consensus       211 ~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~  290 (570)
T 2z63_A          211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV  290 (570)
T ss_dssp             CSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEE
T ss_pred             cccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEec
Confidence                                                                                122344444444


Q ss_pred             CCcCcccCcccCCCCCCcEEEeecCcCcccCchHHh-------------------hCCCccceeecccccccccc--chh
Q 048551          197 GNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIG-------------------AKLPNLRKIVIALNNFTGPL--PDS  255 (409)
Q Consensus       197 ~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~-------------------~~l~~L~~L~L~~n~l~~~~--p~~  255 (409)
                      +|.+.+.+..+..+ +|+.|++++|.+. .+|....                   ..+++|++|++++|.+++..  |..
T Consensus       291 ~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  368 (570)
T 2z63_A          291 SVTIERVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS  368 (570)
T ss_dssp             SCEECSCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHH
T ss_pred             CccchhhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccccccc
Confidence            44443322222222 2222222222222 1111000                   13444555555555554322  344


Q ss_pred             hhcCCCCCEEEcccC-----------------------cCccccc-hhhh-hcccCcEEecccCCccccccccccCChhc
Q 048551          256 FSNASNRERLELSYN-----------------------QFRGKSI-WRSA-ATSYSQRLNDDDQNHHGRQQNICYLPTGI  310 (409)
Q Consensus       256 l~~l~~L~~L~Ls~N-----------------------~l~~~~~-~~~~-l~~l~~~L~l~~n~l~~~~~~l~~ip~~~  310 (409)
                      +..+++|++|++++|                       ++++... ..+. ++++ +.|++++|.+.      +..|..+
T Consensus       369 ~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~------~~~~~~~  441 (570)
T 2z63_A          369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL-IYLDISHTHTR------VAFNGIF  441 (570)
T ss_dssp             HHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC-CEEECTTSCCE------ECCTTTT
T ss_pred             ccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCC-CEEeCcCCccc------ccchhhh
Confidence            444445555555544                       4443321 1111 3333 56666666665      4556667


Q ss_pred             cCCCCCCccc--------------cCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-CCCCCCC
Q 048551          311 SNLVNLDSLA--------------TDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-GVFNNKT  374 (409)
Q Consensus       311 ~~l~~L~~L~--------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~~~~~L~  374 (409)
                      ..+++|+.|+              +..+++|++|++++|++++..|..+..+++|++|++ +|++++..|.. ..+++|+
T Consensus       442 ~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  521 (570)
T 2z63_A          442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ  521 (570)
T ss_dssp             TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCc
Confidence            7777777776              445778888888888888777888888888888888 77777766654 6778888


Q ss_pred             eecccCCCCceecCC
Q 048551          375 RISLAGNGKLCGGFD  389 (409)
Q Consensus       375 ~L~l~~Np~l~g~~p  389 (409)
                      .|++++||.-| ..|
T Consensus       522 ~L~l~~N~~~~-~~~  535 (570)
T 2z63_A          522 KIWLHTNPWDC-SCP  535 (570)
T ss_dssp             EEECCSSCBCC-CTT
T ss_pred             EEEecCCcccC-CCc
Confidence            88888886544 444

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.1e-34  Score=288.61  Aligned_cols=318  Identities=19%  Similarity=0.173  Sum_probs=233.6

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC  148 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  148 (409)
                      ++++|++++|++++..+..|..+++|++|++++|++++..+..|.++++|++|++++|.+++..|..|+++++|++|+++
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  108 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence            79999999999998778899999999999999999998888889999999999999999997777889999999999999


Q ss_pred             cccccccCCccccCCCCCcEEeCCCCCCCC-CCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCC----cEEEeecCc
Q 048551          149 VIKLTGQLPASIQNLSSHLEADSNRNNFGG-KIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSL----EMIYLHDNR  222 (409)
Q Consensus       149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L----~~L~l~~n~  222 (409)
                      +|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+ .+..+++|    +.+++++|.
T Consensus       109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~  188 (570)
T 2z63_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP  188 (570)
T ss_dssp             TSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred             ccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCC
Confidence            999996555579999999999999999987 468899999999999999998876654 33333333    334444333


Q ss_pred             Cccc----------------------------------------------------------------------------
Q 048551          223 LNGN----------------------------------------------------------------------------  226 (409)
Q Consensus       223 l~~~----------------------------------------------------------------------------  226 (409)
                      +++.                                                                            
T Consensus       189 l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~  268 (570)
T 2z63_A          189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD  268 (570)
T ss_dssp             CCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETT
T ss_pred             ceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcch
Confidence            3211                                                                            


Q ss_pred             -----CchHHhhCCCccceeeccccccccccchhh------------------------------------------hcC
Q 048551          227 -----LPPVIGAKLPNLRKIVIALNNFTGPLPDSF------------------------------------------SNA  259 (409)
Q Consensus       227 -----~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l------------------------------------------~~l  259 (409)
                           +|..+. .+++|++|++++|.++ .+|..+                                          ..+
T Consensus       269 ~~~~~~~~~~~-~l~~L~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~  346 (570)
T 2z63_A          269 YYLDDIIDLFN-CLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL  346 (570)
T ss_dssp             EEESCSTTTTG-GGTTCSEEEEESCEEC-SCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBC
T ss_pred             hhhhhchhhhc-CcCcccEEEecCccch-hhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccC
Confidence                 111111 2334444444444433 122111                                          467


Q ss_pred             CCCCEEEcccCcCcccc--chhhh-hcccCcEEecccCCccc------ccccc-----------ccCC-hhccCCCCCCc
Q 048551          260 SNRERLELSYNQFRGKS--IWRSA-ATSYSQRLNDDDQNHHG------RQQNI-----------CYLP-TGISNLVNLDS  318 (409)
Q Consensus       260 ~~L~~L~Ls~N~l~~~~--~~~~~-l~~l~~~L~l~~n~l~~------~~~~l-----------~~ip-~~~~~l~~L~~  318 (409)
                      ++|++|++++|++++..  ...+. ++++ +.|++++|.+.+      .++.+           +..| ..+..+++|++
T Consensus       347 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L-~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  425 (570)
T 2z63_A          347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSL-KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY  425 (570)
T ss_dssp             TTCCEEECCSSCCBEEEEEEHHHHTCSCC-CEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred             CCCCEEeCcCCccCccccccccccccCcc-CEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence            88999999999998764  22222 4455 777777777653      11111           1122 24566777777


Q ss_pred             cc-------------cCCCCCCCEEECcCCccc-cccchhhhcCCCCcEEEe-eccceecCCCC-CCCCCCCeecccCCC
Q 048551          319 LA-------------TDSLKSIEELDLSSNNLS-GQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-GVFNNKTRISLAGNG  382 (409)
Q Consensus       319 L~-------------~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~~~~~L~~L~l~~Np  382 (409)
                      |+             +.++++|++|++++|+++ +.+|..+..+++|++|++ +|++.+..|.. ..+++|+.|++++| 
T Consensus       426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-  504 (570)
T 2z63_A          426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-  504 (570)
T ss_dssp             EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred             EeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC-
Confidence            76             456778888888888887 467778888888888888 78888776765 67788888888888 


Q ss_pred             CceecCCC
Q 048551          383 KLCGGFDG  390 (409)
Q Consensus       383 ~l~g~~p~  390 (409)
                      .+.+.+|.
T Consensus       505 ~l~~~~~~  512 (570)
T 2z63_A          505 QLKSVPDG  512 (570)
T ss_dssp             CCSCCCTT
T ss_pred             cCCCCCHH
Confidence            67766654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=7.9e-34  Score=293.92  Aligned_cols=315  Identities=19%  Similarity=0.157  Sum_probs=209.2

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCc-----cCCc----ccCCC
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAG-----EIPA----EIGNL  139 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~p~----~~~~l  139 (409)
                      ++++|++++|.+++..|..|..+++|++|++++|.+++..|..|.++++|++|++++|...+     .+|.    .++.+
T Consensus       249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l  328 (680)
T 1ziw_A          249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL  328 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred             CCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC
Confidence            57888888888877677777788888888888888777767666666666666666554332     1222    45566


Q ss_pred             CCCcEEEeecccccccCCccccCCCCCcEEeCCCC----------------------------CCCCCCCCCCCCCCCCc
Q 048551          140 FKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRN----------------------------NFGGKIPESPGQLRSLF  191 (409)
Q Consensus       140 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n----------------------------~l~~~~~~~~~~l~~L~  191 (409)
                      ++|++|++++|.+++..+..+.++++|++|++++|                            ++++..|..+..+++|+
T Consensus       329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  408 (680)
T 1ziw_A          329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE  408 (680)
T ss_dssp             TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence            66666666666666555555555555555555444                            44444455556666666


Q ss_pred             EEEccCCcCcccCc--ccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccc--cccchhhhcCCCCCEEEc
Q 048551          192 YLNVGGNQFSGMFL--PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFT--GPLPDSFSNASNRERLEL  267 (409)
Q Consensus       192 ~L~l~~n~l~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~L  267 (409)
                      +|++++|.+.+..+  .+.++++|+.|++++|.+++..+..+. .+++|+.|++++|.++  +..|..+.++++|+.|++
T Consensus       409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~L  487 (680)
T 1ziw_A          409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA-LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL  487 (680)
T ss_dssp             EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTT-TCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEEC
T ss_pred             EEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhh-cCcccccchhccccccccccCCcccccCCCCCEEEC
Confidence            66666666654332  455666666666666666533333333 5666666666666654  356667777778888888


Q ss_pred             ccCcCccccchhhh-hcccCcEEecccCCccccccccccCC----hhccCCCCCCccc-------------cCCCCCCCE
Q 048551          268 SYNQFRGKSIWRSA-ATSYSQRLNDDDQNHHGRQQNICYLP----TGISNLVNLDSLA-------------TDSLKSIEE  329 (409)
Q Consensus       268 s~N~l~~~~~~~~~-l~~l~~~L~l~~n~l~~~~~~l~~ip----~~~~~l~~L~~L~-------------~~~l~~L~~  329 (409)
                      ++|++++.+...+. +.++ +.|++++|.+++-..  ..+|    ..+..+++|+.|+             |.++++|+.
T Consensus       488 s~N~l~~i~~~~~~~l~~L-~~L~Ls~N~l~~~~~--~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~  564 (680)
T 1ziw_A          488 SNNNIANINDDMLEGLEKL-EILDLQHNNLARLWK--HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI  564 (680)
T ss_dssp             CSSCCCCCCTTTTTTCTTC-CEEECCSSCCGGGGS--TTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCCCcCChhhhcccccc-CEEeCCCCCccccch--hhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence            88887776544444 4455 788888887762100  0111    2356667777766             567889999


Q ss_pred             EECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-C-CCCCCCeecccCCCCceec
Q 048551          330 LDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-G-VFNNKTRISLAGNGKLCGG  387 (409)
Q Consensus       330 L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~-~~~~L~~L~l~~Np~l~g~  387 (409)
                      |++++|++++..+..|..+++|++|++ +|++++..+.. . .+++|+.+++++||+.|+.
T Consensus       565 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c  625 (680)
T 1ziw_A          565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC  625 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred             eECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence            999999999776777889999999999 88887765543 3 5789999999999999854

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1e-33  Score=284.06  Aligned_cols=127  Identities=14%  Similarity=0.118  Sum_probs=112.2

Q ss_pred             CCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551           68 ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF  147 (409)
Q Consensus        68 ~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  147 (409)
                      .++++|++++|.+++..|..|..+++|++|++++|++++..|..|.++++|++|++++|+++ .+|..  .+++|++|++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L   97 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL   97 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence            48999999999999777788999999999999999999888889999999999999999998 57765  7899999999


Q ss_pred             ecccccc-cCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCC--cEEEccCCcC
Q 048551          148 CVIKLTG-QLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSL--FYLNVGGNQF  200 (409)
Q Consensus       148 ~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~l~~n~l  200 (409)
                      ++|.+++ .+|..++++++|++|++++|.+.+   ..+..+++|  ++|++++|.+
T Consensus        98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred             cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence            9999986 478899999999999999999885   346677777  9999999988

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.2e-33  Score=283.11  Aligned_cols=306  Identities=19%  Similarity=0.194  Sum_probs=228.3

Q ss_pred             cCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEE
Q 048551           67 CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS  146 (409)
Q Consensus        67 c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  146 (409)
                      |...+++++++|+++ .+|..+.  ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|+++++|++|+
T Consensus        30 ~~~~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  106 (562)
T 3a79_B           30 NELESMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD  106 (562)
T ss_dssp             ---CCEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred             cCCCcEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence            445689999999999 5887665  8999999999999987778999999999999999999988889999999999999


Q ss_pred             eecccccccCCccccCCCCCcEEeCCCCCCCC-CCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCC--cEEEeecCcC
Q 048551          147 FCVIKLTGQLPASIQNLSSHLEADSNRNNFGG-KIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSL--EMIYLHDNRL  223 (409)
Q Consensus       147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L--~~L~l~~n~l  223 (409)
                      +++|.++ .+|..  .+++|++|++++|++++ ..|..++++++|++|++++|.+++.  .+..+++|  +.|++++|.+
T Consensus       107 Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          107 VSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             CTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSC
T ss_pred             CCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccc
Confidence            9999999 67766  89999999999999986 3467899999999999999999863  34455555  9999999988


Q ss_pred             --cccCchHHhh--------------------------------------------------------------------
Q 048551          224 --NGNLPPVIGA--------------------------------------------------------------------  233 (409)
Q Consensus       224 --~~~~p~~~~~--------------------------------------------------------------------  233 (409)
                        ++..|..+..                                                                    
T Consensus       182 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l  261 (562)
T 3a79_B          182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET  261 (562)
T ss_dssp             CCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEE
T ss_pred             cccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcC
Confidence              5444433320                                                                    


Q ss_pred             ------------CCCccceeeccccccccccchhh---------------------------------------------
Q 048551          234 ------------KLPNLRKIVIALNNFTGPLPDSF---------------------------------------------  256 (409)
Q Consensus       234 ------------~l~~L~~L~L~~n~l~~~~p~~l---------------------------------------------  256 (409)
                                  ..++|++|++++|.+++.+|..+                                             
T Consensus       262 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n  341 (562)
T 3a79_B          262 TWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT  341 (562)
T ss_dssp             CHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESS
T ss_pred             cHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCC
Confidence                        11267788888888887776654                                             


Q ss_pred             --------hcCCCCCEEEcccCcCccccchhhh-hcccCcEEecccCCccccccccccCChhccCCCCCCccc-------
Q 048551          257 --------SNASNRERLELSYNQFRGKSIWRSA-ATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLA-------  320 (409)
Q Consensus       257 --------~~l~~L~~L~Ls~N~l~~~~~~~~~-l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~-------  320 (409)
                              ..+++|++|++++|++++.....+. ++++ +.|++++|.+++    +..+|..+..+++|+.|+       
T Consensus       342 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~L~~N~l~~----~~~~~~~~~~l~~L~~L~l~~N~l~  416 (562)
T 3a79_B          342 PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRL-QTLILQRNGLKN----FFKVALMTKNMSSLETLDVSLNSLN  416 (562)
T ss_dssp             CCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSC-CEEECCSSCCCB----TTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred             CcccccCccCCCCceEEECCCCccccchhhhhcccCCC-CEEECCCCCcCC----cccchhhhcCCCCCCEEECCCCcCC
Confidence                    4556677777777777664433333 4444 777777776661    012234466666666666       


Q ss_pred             -------cCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-CCCCCCCeecccCCCCceecCCC
Q 048551          321 -------TDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-GVFNNKTRISLAGNGKLCGGFDG  390 (409)
Q Consensus       321 -------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~~~~~L~~L~l~~Np~l~g~~p~  390 (409)
                             +..+++|++|++++|++++.+|..+.  ++|++|++ +|++. .+|.. ..+++|+.|++++| .+. .+|.
T Consensus       417 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N-~l~-~l~~  490 (562)
T 3a79_B          417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASN-QLK-SVPD  490 (562)
T ss_dssp             SCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSS-CCC-CCCT
T ss_pred             CccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCC-CCC-CCCH
Confidence                   33456777777777777766655443  67888888 66665 56654 67788888889888 566 4554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=3.9e-33  Score=295.17  Aligned_cols=302  Identities=21%  Similarity=0.162  Sum_probs=209.7

Q ss_pred             CCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccC-CccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEE
Q 048551           68 ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTI-PTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS  146 (409)
Q Consensus        68 ~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  146 (409)
                      .++++|+|++|.+++..|..|.++++|++|++++|.+.+.+ |..|.++++|++|++++|.+++..|..|+++++|++|+
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  103 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR  103 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence            37889999999998778888999999999999999665555 77888999999999999999877788899999999999


Q ss_pred             eecccccccCCcc--ccCCCCCcEEeCCCCCCCCCCC-CCCCCCCCCcEEEccCCcCcccCc-ccCCC--CCCcEEEeec
Q 048551          147 FCVIKLTGQLPAS--IQNLSSHLEADSNRNNFGGKIP-ESPGQLRSLFYLNVGGNQFSGMFL-PVYNL--SSLEMIYLHD  220 (409)
Q Consensus       147 L~~n~l~~~~p~~--l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l--~~L~~L~l~~  220 (409)
                      +++|.+++..|..  +.++++|++|++++|.+.+..+ ..|+++++|++|++++|.+++..+ .+..+  ++|+.|++++
T Consensus       104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~  183 (844)
T 3j0a_A          104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA  183 (844)
T ss_dssp             CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred             CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCC
Confidence            9999988766655  8889999999999999886654 468889999999999998887665 55555  6777777777


Q ss_pred             CcCcccCchHHhhCCCc------cceeeccccccccccchhhhc------------------------------------
Q 048551          221 NRLNGNLPPVIGAKLPN------LRKIVIALNNFTGPLPDSFSN------------------------------------  258 (409)
Q Consensus       221 n~l~~~~p~~~~~~l~~------L~~L~L~~n~l~~~~p~~l~~------------------------------------  258 (409)
                      |.+.+..|..+. .+++      |+.|++++|.+++..+..+..                                    
T Consensus       184 n~l~~~~~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~  262 (844)
T 3j0a_A          184 NSLYSRVSVDWG-KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG  262 (844)
T ss_dssp             SBSCCCCCCCCC-SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred             Cccccccccchh-hcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence            777766655443 3333      777777777665544433321                                    


Q ss_pred             --CCCCCEEEcccCcCccccchhhh-hcccCcEEecccCCccccccccccCChhccCCCCCCccc-------------cC
Q 048551          259 --ASNRERLELSYNQFRGKSIWRSA-ATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLA-------------TD  322 (409)
Q Consensus       259 --l~~L~~L~Ls~N~l~~~~~~~~~-l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~-------------~~  322 (409)
                        .++|+.|++++|.+.+.....+. ++++ +.|++++|.+.      +..|..+..+++|+.|+             |.
T Consensus       263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~L~~n~i~------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  335 (844)
T 3j0a_A          263 LARSSVRHLDLSHGFVFSLNSRVFETLKDL-KVLNLAYNKIN------KIADEAFYGLDNLQVLNLSYNLLGELYSSNFY  335 (844)
T ss_dssp             TTTSCCCEEECTTCCCCEECSCCSSSCCCC-CEEEEESCCCC------EECTTTTTTCSSCCEEEEESCCCSCCCSCSCS
T ss_pred             cccCCccEEECCCCcccccChhhhhcCCCC-CEEECCCCcCC------CCChHHhcCCCCCCEEECCCCCCCccCHHHhc
Confidence              14566666666666554433333 3344 66666666665      33344555555555554             44


Q ss_pred             CCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCCCCCCCCCeecccCC
Q 048551          323 SLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTKGVFNNKTRISLAGN  381 (409)
Q Consensus       323 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~~~~~~L~~L~l~~N  381 (409)
                      ++++|++|++++|++++..+..+..+++|++|++ +|.+.+ ++.   +++|+.+++++|
T Consensus       336 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~---~~~L~~L~l~~N  391 (844)
T 3j0a_A          336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IHF---IPSIPDIFLSGN  391 (844)
T ss_dssp             SCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CSS---CCSCSEEEEESC
T ss_pred             CCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-ccC---CCCcchhccCCC
Confidence            5566667777777666555556666666777766 554442 222   455555555555

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=3.8e-32  Score=258.50  Aligned_cols=288  Identities=21%  Similarity=0.279  Sum_probs=197.1

Q ss_pred             CCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551           68 ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF  147 (409)
Q Consensus        68 ~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  147 (409)
                      .++++|+++++.+. .++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++ ++ .+..+++|++|++
T Consensus        44 ~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l  117 (347)
T 4fmz_A           44 ESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYL  117 (347)
T ss_dssp             TTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEEC
T ss_pred             ccccEEEEeCCccc-cch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEEC
Confidence            36777777777776 444 367777777777777777743 33 7777777777777777763 33 4777777777777


Q ss_pred             ecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccC
Q 048551          148 CVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNL  227 (409)
Q Consensus       148 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~  227 (409)
                      ++|.+++ ++. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+. .+
T Consensus       118 ~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~-~~  192 (347)
T 4fmz_A          118 NEDNISD-ISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIE-DI  192 (347)
T ss_dssp             TTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCC-CC
T ss_pred             cCCcccC-chh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccc-cc
Confidence            7777763 333 6777777777777775543333 36677777777777777765443 666777777777777776 44


Q ss_pred             chHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh-hcccCcEEecccCCccccccccccC
Q 048551          228 PPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA-ATSYSQRLNDDDQNHHGRQQNICYL  306 (409)
Q Consensus       228 p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-l~~l~~~L~l~~n~l~~~~~~l~~i  306 (409)
                      +. +. .+++|+.+++++|.+++..+  +..+++|++|++++|++++.+.  +. ++++ +.|++++|.++       .+
T Consensus       193 ~~-~~-~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L-~~L~l~~n~l~-------~~  258 (347)
T 4fmz_A          193 SP-LA-SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQL-TWLEIGTNQIS-------DI  258 (347)
T ss_dssp             GG-GG-GCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTC-CEEECCSSCCC-------CC
T ss_pred             cc-cc-CCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCC-CEEECCCCccC-------CC
Confidence            44 33 66777777777777764433  6677777777777777766543  22 3344 77777777666       23


Q ss_pred             ChhccCCCCCCccc-----------cCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCCCCCCCCC
Q 048551          307 PTGISNLVNLDSLA-----------TDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTKGVFNNKT  374 (409)
Q Consensus       307 p~~~~~l~~L~~L~-----------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~~~~~~L~  374 (409)
                       ..+..+++|+.|+           +..+++|++|++++|++++..|..+..+++|++|++ +|++++..| ...+++|+
T Consensus       259 -~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~  336 (347)
T 4fmz_A          259 -NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMD  336 (347)
T ss_dssp             -GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCS
T ss_pred             -hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccc
Confidence             2344555555554           445678888888888888888888888888888888 788777666 45788888


Q ss_pred             eecccCCC
Q 048551          375 RISLAGNG  382 (409)
Q Consensus       375 ~L~l~~Np  382 (409)
                      .|++++|+
T Consensus       337 ~L~l~~N~  344 (347)
T 4fmz_A          337 SADFANQV  344 (347)
T ss_dssp             EESSSCC-
T ss_pred             eeehhhhc
Confidence            88888884

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=7.5e-32  Score=276.20  Aligned_cols=136  Identities=18%  Similarity=0.150  Sum_probs=122.2

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC  148 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  148 (409)
                      ++++|||++|+|++..+.+|.++++|++|+|++|+|++..+.+|.++++|++|++++|++++..+..|+++++|++|+++
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls  132 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  132 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence            68999999999997677789999999999999999998778889999999999999999996666779999999999999


Q ss_pred             cccccccCCccccCCCCCcEEeCCCCCCCC-CCCCCCCCCCCCcEEEccCCcCcccC
Q 048551          149 VIKLTGQLPASIQNLSSHLEADSNRNNFGG-KIPESPGQLRSLFYLNVGGNQFSGMF  204 (409)
Q Consensus       149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~  204 (409)
                      +|++++..+..|+++++|++|++++|.+++ ..|..+..+++|++|++++|.+++..
T Consensus       133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~  189 (635)
T 4g8a_A          133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  189 (635)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence            999997666779999999999999999975 45777889999999999999876553

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=3e-32  Score=257.83  Aligned_cols=269  Identities=22%  Similarity=0.244  Sum_probs=211.8

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC  148 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  148 (409)
                      +++.+++++++++ .+|..+.  ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..++.+++|++|+++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            6788999999998 7787664  789999999999997778889999999999999999998778899999999999999


Q ss_pred             cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcc--cCc-ccCCCCCCcEEEeecCcCcc
Q 048551          149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSG--MFL-PVYNLSSLEMIYLHDNRLNG  225 (409)
Q Consensus       149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~-~~~~l~~L~~L~l~~n~l~~  225 (409)
                      +|.++ .+|..+.  ++|++|++++|.+.+..+..+.++++|++|++++|.++.  ..+ .+..+ +|+.|++++|.++ 
T Consensus       111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-  185 (332)
T 2ft3_A          111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-  185 (332)
T ss_dssp             SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-
T ss_pred             CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-
Confidence            99998 6776655  799999999999997666678999999999999999964  444 66666 9999999999998 


Q ss_pred             cCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCcccccccccc
Q 048551          226 NLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICY  305 (409)
Q Consensus       226 ~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~  305 (409)
                      .+|..+.   ++|++|++++|.+++..+..+..+++|++|++++|++++.+.                            
T Consensus       186 ~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~----------------------------  234 (332)
T 2ft3_A          186 GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN----------------------------  234 (332)
T ss_dssp             SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT----------------------------
T ss_pred             ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh----------------------------
Confidence            6777653   789999999999998888889999999999999999875432                            


Q ss_pred             CChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-C------CCCCCCeec
Q 048551          306 LPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-G------VFNNKTRIS  377 (409)
Q Consensus       306 ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~------~~~~L~~L~  377 (409)
                        ..+           ..+++|++|++++|+++ .+|..+..+++|++|++ +|++++..+.. .      .+++|+.++
T Consensus       235 --~~~-----------~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~  300 (332)
T 2ft3_A          235 --GSL-----------SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS  300 (332)
T ss_dssp             --TGG-----------GGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEE
T ss_pred             --hHh-----------hCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceE
Confidence              122           22355566666666666 56666666666777776 55555433322 1      135566677


Q ss_pred             ccCCCCceecCCC
Q 048551          378 LAGNGKLCGGFDG  390 (409)
Q Consensus       378 l~~Np~l~g~~p~  390 (409)
                      +++||..+..+++
T Consensus       301 l~~N~~~~~~~~~  313 (332)
T 2ft3_A          301 LFNNPVPYWEVQP  313 (332)
T ss_dssp             CCSSSSCGGGSCG
T ss_pred             eecCcccccccCc
Confidence            7777655444443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4.4e-32  Score=287.07  Aligned_cols=302  Identities=19%  Similarity=0.174  Sum_probs=254.3

Q ss_pred             cEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccC-CcccCCCCCCcEEEeec
Q 048551           71 RFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEI-PAEIGNLFKLEKLSFCV  149 (409)
Q Consensus        71 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~L~~  149 (409)
                      +..+.++++++ .+|.   -.+++++|+|++|.+++..|..|.++++|++|++++|...+.+ |..|+++++|++|++++
T Consensus         7 ~~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~   82 (844)
T 3j0a_A            7 RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS   82 (844)
T ss_dssp             EEEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred             eEEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence            46788899999 7776   4579999999999999888999999999999999999666566 77899999999999999


Q ss_pred             ccccccCCccccCCCCCcEEeCCCCCCCCCCCCC--CCCCCCCcEEEccCCcCcccCc--ccCCCCCCcEEEeecCcCcc
Q 048551          150 IKLTGQLPASIQNLSSHLEADSNRNNFGGKIPES--PGQLRSLFYLNVGGNQFSGMFL--PVYNLSSLEMIYLHDNRLNG  225 (409)
Q Consensus       150 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~l~~L~~L~l~~n~l~~  225 (409)
                      |.+++..|..|.++++|++|++++|.+++..|..  +.++++|++|++++|.+++..+  .+.++++|++|++++|.+++
T Consensus        83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A           83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred             CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence            9999888999999999999999999999876655  8999999999999999988754  68999999999999999997


Q ss_pred             cCchHHhhCC--CccceeeccccccccccchhhhcCCC------CCEEEcccCcCccccchhhh----------------
Q 048551          226 NLPPVIGAKL--PNLRKIVIALNNFTGPLPDSFSNASN------RERLELSYNQFRGKSIWRSA----------------  281 (409)
Q Consensus       226 ~~p~~~~~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~------L~~L~Ls~N~l~~~~~~~~~----------------  281 (409)
                      ..+..+. .+  ++|+.|++++|.+.+..|..+..+.+      |+.|++++|.+++.....+.                
T Consensus       163 ~~~~~l~-~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~  241 (844)
T 3j0a_A          163 VCEHELE-PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH  241 (844)
T ss_dssp             CCSGGGH-HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred             eCHHHcc-cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence            7777776 55  89999999999999888887777665      99999999987654321111                


Q ss_pred             -----------------------hcccCcEEecccCCccccccccccCChhccCCCCCCccc-------------cCCCC
Q 048551          282 -----------------------ATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLA-------------TDSLK  325 (409)
Q Consensus       282 -----------------------l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~-------------~~~l~  325 (409)
                                             ..++ +.|++++|.+.      +..|..+..+++|+.|+             |.+++
T Consensus       242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L-~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~  314 (844)
T 3j0a_A          242 IMGAGFGFHNIKDPDQNTFAGLARSSV-RHLDLSHGFVF------SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD  314 (844)
T ss_dssp             CCBCSSSCSSSTTGGGTTTTTTTTSCC-CEEECTTCCCC------EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCS
T ss_pred             cccccccccccCCCChhhhhccccCCc-cEEECCCCccc------ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCC
Confidence                                   0233 78888888887      45566777888888887             66788


Q ss_pred             CCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-CCCCCCCeecccCCCCce
Q 048551          326 SIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-GVFNNKTRISLAGNGKLC  385 (409)
Q Consensus       326 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~~~~~L~~L~l~~Np~l~  385 (409)
                      +|++|++++|++++..|..+..+++|++|++ +|++.+..+.. ..+++|+.|++++| .+.
T Consensus       315 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~  375 (844)
T 3j0a_A          315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN-ALT  375 (844)
T ss_dssp             SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETC-CSC
T ss_pred             CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCC-CCC
Confidence            9999999999998777888999999999999 77776555543 67889999999998 455

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=4.9e-32  Score=273.52  Aligned_cols=312  Identities=19%  Similarity=0.209  Sum_probs=233.1

Q ss_pred             CCCceeeecCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCC
Q 048551           59 LCEWTGVTCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGN  138 (409)
Q Consensus        59 ~c~~~g~~c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~  138 (409)
                      .|.|.|+ |      +.++++++ .+|..+.  ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|+.
T Consensus         3 ~C~~~~~-c------~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~   72 (549)
T 2z81_A            3 SCDASGV-C------DGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYS   72 (549)
T ss_dssp             EECTTSE-E------ECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             cCCCCce-E------ECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccc
Confidence            4777776 5      77889998 7887665  79999999999999888899999999999999999999888889999


Q ss_pred             CCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCC-CCCCCCCCCCCCcEEEccCCc-CcccCc-ccCCCCCCcE
Q 048551          139 LFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGG-KIPESPGQLRSLFYLNVGGNQ-FSGMFL-PVYNLSSLEM  215 (409)
Q Consensus       139 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~l~~L~~  215 (409)
                      +++|++|++++|.+++..|..++++++|++|++++|.+++ ..|..++++++|++|++++|. +...++ .+.++++|++
T Consensus        73 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~  152 (549)
T 2z81_A           73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE  152 (549)
T ss_dssp             CTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred             cccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCe
Confidence            9999999999999997777779999999999999999986 456789999999999999998 455554 7899999999


Q ss_pred             EEeecCcCcccCchHHhhCCCccceeeccccccccccchh-hhcCCCCCEEEcccCcCccccchhh---h-h--------
Q 048551          216 IYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDS-FSNASNRERLELSYNQFRGKSIWRS---A-A--------  282 (409)
Q Consensus       216 L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~~~~~---~-l--------  282 (409)
                      |++++|.+++.+|..+. .+++|++|++++|.+. .+|.. +..+++|++|++++|++++..+...   . .        
T Consensus       153 L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l  230 (549)
T 2z81_A          153 LEIKALSLRNYQSQSLK-SIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF  230 (549)
T ss_dssp             EEEEETTCCEECTTTTT-TCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEE
T ss_pred             eeccCCcccccChhhhh-ccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceec
Confidence            99999999988888776 7777888888777766 33433 3557777777777777766421000   0 0        


Q ss_pred             --------------------cccCcEEecccCCcccc-------------------------------------------
Q 048551          283 --------------------TSYSQRLNDDDQNHHGR-------------------------------------------  299 (409)
Q Consensus       283 --------------------~~l~~~L~l~~n~l~~~-------------------------------------------  299 (409)
                                          ..+ +.+++++|.+.|.                                           
T Consensus       231 ~~n~l~~~~~~~l~~~~~~~~~L-~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~  309 (549)
T 2z81_A          231 RGSVLTDESFNELLKLLRYILEL-SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL  309 (549)
T ss_dssp             ESCEEEHHHHHHHHGGGGGCTTC-CEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHS
T ss_pred             cccccchhHHHHHHHHhhhhccc-cccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhc
Confidence                                011 2222222222110                                           


Q ss_pred             --cc-------ccccCChhc-cCCCCCCccc----------------cCCCCCCCEEECcCCccccccc--hhhhcCCCC
Q 048551          300 --QQ-------NICYLPTGI-SNLVNLDSLA----------------TDSLKSIEELDLSSNNLSGQLP--RLLVNLSFL  351 (409)
Q Consensus       300 --~~-------~l~~ip~~~-~~l~~L~~L~----------------~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L  351 (409)
                        ++       .+..+|..+ ..+++|++|+                +..+++|++|++++|++++..+  ..+..+++|
T Consensus       310 ~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L  389 (549)
T 2z81_A          310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL  389 (549)
T ss_dssp             TTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTC
T ss_pred             ccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCC
Confidence              00       002456555 3577777777                2356788888888888875432  457788888


Q ss_pred             cEEEe-eccceecCCCC-CCCCCCCeecccCCCCce
Q 048551          352 VLLNL-YNHFDGEVPTK-GVFNNKTRISLAGNGKLC  385 (409)
Q Consensus       352 ~~L~L-~n~l~~~~p~~-~~~~~L~~L~l~~Np~l~  385 (409)
                      ++|++ +|++. .+|.. ..+++|+.|++++| .+.
T Consensus       390 ~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N-~l~  423 (549)
T 2z81_A          390 TSLDISRNTFH-PMPDSCQWPEKMRFLNLSST-GIR  423 (549)
T ss_dssp             CEEECTTCCCC-CCCSCCCCCTTCCEEECTTS-CCS
T ss_pred             CEEECCCCCCc-cCChhhcccccccEEECCCC-Ccc
Confidence            88888 77666 45654 56677788888777 343

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=1.1e-31  Score=253.79  Aligned_cols=270  Identities=19%  Similarity=0.268  Sum_probs=216.8

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC  148 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  148 (409)
                      +++.+++++++++ .+|..+.  +.+++|++++|.+++..+..|..+++|++|++++|.+++..|..++.+++|++|+++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            6788899999988 6776654  689999999999997777789999999999999999997778999999999999999


Q ss_pred             cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcc--cCc-ccCCCCCCcEEEeecCcCcc
Q 048551          149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSG--MFL-PVYNLSSLEMIYLHDNRLNG  225 (409)
Q Consensus       149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~-~~~~l~~L~~L~l~~n~l~~  225 (409)
                      +|.++ .+|..+.  ++|++|++++|.+.+..+..+.++++|++|++++|.+..  ..+ .+.++++|+.|++++|.++ 
T Consensus       109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-  184 (330)
T 1xku_A          109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-  184 (330)
T ss_dssp             SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred             CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-
Confidence            99998 6676655  799999999999997777778999999999999999964  444 7888999999999999998 


Q ss_pred             cCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCcccccccccc
Q 048551          226 NLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICY  305 (409)
Q Consensus       226 ~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~  305 (409)
                      .+|..+.   ++|++|++++|.+++..|..+..+++|++|++++|++++.+.                            
T Consensus       185 ~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----------------------------  233 (330)
T 1xku_A          185 TIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN----------------------------  233 (330)
T ss_dssp             SCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT----------------------------
T ss_pred             cCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh----------------------------
Confidence            6777643   789999999999998888899999999999999999875421                            


Q ss_pred             CChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-------CCCCCCCeec
Q 048551          306 LPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-------GVFNNKTRIS  377 (409)
Q Consensus       306 ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-------~~~~~L~~L~  377 (409)
                        ..+           ..+++|++|++++|+++ .+|..+..+++|++|++ +|++++..+..       ...++++.++
T Consensus       234 --~~~-----------~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~  299 (330)
T 1xku_A          234 --GSL-----------ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS  299 (330)
T ss_dssp             --TTG-----------GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEE
T ss_pred             --hhc-----------cCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceE
Confidence              122           23456677777777777 56666777777777777 66665433322       1235677777


Q ss_pred             ccCCCCceecCCC
Q 048551          378 LAGNGKLCGGFDG  390 (409)
Q Consensus       378 l~~Np~l~g~~p~  390 (409)
                      +++||.-+..+++
T Consensus       300 l~~N~~~~~~i~~  312 (330)
T 1xku_A          300 LFSNPVQYWEIQP  312 (330)
T ss_dssp             CCSSSSCGGGSCG
T ss_pred             eecCcccccccCc
Confidence            7777766655543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=100.00  E-value=8.4e-32  Score=256.93  Aligned_cols=283  Identities=19%  Similarity=0.206  Sum_probs=210.3

Q ss_pred             CCCCCCCCCceeeecCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccC
Q 048551           53 LTNSVNLCEWTGVTCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEI  132 (409)
Q Consensus        53 w~~~~~~c~~~g~~c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  132 (409)
                      |......|.|.++ |      ++++++++ .+|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus        23 ~~~~~~~C~~~~~-c------~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~   92 (353)
T 2z80_A           23 SNQASLSCDRNGI-C------KGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE   92 (353)
T ss_dssp             ----CCEECTTSE-E------ECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred             CCccCCCCCCCeE-e------eCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccC
Confidence            4445567777765 4      77899998 7887665  58999999999999766668999999999999999999877


Q ss_pred             CcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCC-CCCCCCCCCcEEEccCC-cCcccCc-ccCC
Q 048551          133 PAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIP-ESPGQLRSLFYLNVGGN-QFSGMFL-PVYN  209 (409)
Q Consensus       133 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~  209 (409)
                      |..|+++++|++|++++|.+++..+..+.++++|++|++++|++++..+ ..+.++++|++|++++| .+....+ .+.+
T Consensus        93 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  172 (353)
T 2z80_A           93 EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG  172 (353)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred             HhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccC
Confidence            8889999999999999999995444458999999999999999985444 47889999999999999 4777666 7889


Q ss_pred             CCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEE
Q 048551          210 LSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRL  289 (409)
Q Consensus       210 l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L  289 (409)
                      +++|++|++++|.+++..|..+. .+++|++|++++|.++...+..+..+++|+.|++++|++++.....+.        
T Consensus       173 l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~--------  243 (353)
T 2z80_A          173 LTFLEELEIDASDLQSYEPKSLK-SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS--------  243 (353)
T ss_dssp             CCEEEEEEEEETTCCEECTTTTT-TCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----------
T ss_pred             CCCCCEEECCCCCcCccCHHHHh-ccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc--------
Confidence            99999999999999977787777 899999999999999744444456789999999999999865321111        


Q ss_pred             ecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCCcccc----ccchhhhcCCCCcEEEe-eccceecC
Q 048551          290 NDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSG----QLPRLLVNLSFLVLLNL-YNHFDGEV  364 (409)
Q Consensus       290 ~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L-~n~l~~~~  364 (409)
                                            .        ....+.++.++++++++++    .+|..+..+++|++|++ +|++. .+
T Consensus       244 ----------------------~--------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i  292 (353)
T 2z80_A          244 ----------------------T--------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SV  292 (353)
T ss_dssp             ---------------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CC
T ss_pred             ----------------------c--------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-cc
Confidence                                  0        0112334555555555543    24555556666666666 55554 33


Q ss_pred             CCC--CCCCCCCeecccCCCCce
Q 048551          365 PTK--GVFNNKTRISLAGNGKLC  385 (409)
Q Consensus       365 p~~--~~~~~L~~L~l~~Np~l~  385 (409)
                      |..  ..+++|+.|++++||..|
T Consensus       293 ~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          293 PDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CHHHHhcCCCCCEEEeeCCCccC
Confidence            432  455666666666665444

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.98  E-value=4.1e-31  Score=250.02  Aligned_cols=275  Identities=19%  Similarity=0.252  Sum_probs=217.9

Q ss_pred             CCCCceeeecC-------------CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcC
Q 048551           58 NLCEWTGVTCA-------------SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFAN  124 (409)
Q Consensus        58 ~~c~~~g~~c~-------------~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  124 (409)
                      +.|.|..+.|.             ++++|++++|.+++..|..|.++++|++|++++|.+++..|..|..+++|++|+++
T Consensus        31 c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           31 CHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             CcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            45788888886             68999999999997778899999999999999999998889999999999999999


Q ss_pred             CCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCC--CCCCCCCCCCCCCcEEEccCCcCcc
Q 048551          125 RNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFG--GKIPESPGQLRSLFYLNVGGNQFSG  202 (409)
Q Consensus       125 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~  202 (409)
                      +|.++ .+|..+.  ++|++|++++|.+++..+..+.++++|++|++++|.++  +..+..+..+ +|++|++++|.+++
T Consensus       111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred             CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence            99999 6776655  89999999999999666667999999999999999996  3677788888 99999999999998


Q ss_pred             cCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhh
Q 048551          203 MFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAA  282 (409)
Q Consensus       203 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l  282 (409)
                      .+..+.  ++|++|++++|.+++..+..+. .+++|++|++++|.+++..+..+..+++|++|++++|+++.        
T Consensus       187 l~~~~~--~~L~~L~l~~n~i~~~~~~~l~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--------  255 (332)
T 2ft3_A          187 IPKDLP--ETLNELHLDHNKIQAIELEDLL-RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR--------  255 (332)
T ss_dssp             CCSSSC--SSCSCCBCCSSCCCCCCTTSST-TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB--------
T ss_pred             cCcccc--CCCCEEECCCCcCCccCHHHhc-CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee--------
Confidence            665443  7999999999999965556666 89999999999999998888889999999999999999873        


Q ss_pred             cccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhc------CCCCcEEEe
Q 048551          283 TSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVN------LSFLVLLNL  356 (409)
Q Consensus       283 ~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~L  356 (409)
                                             +|..+..           +++|++|++++|+|++..+..+..      .+.|+.+++
T Consensus       256 -----------------------lp~~l~~-----------l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l  301 (332)
T 2ft3_A          256 -----------------------VPAGLPD-----------LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISL  301 (332)
T ss_dssp             -----------------------CCTTGGG-----------CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEEC
T ss_pred             -----------------------cChhhhc-----------CccCCEEECCCCCCCccChhHccccccccccccccceEe
Confidence                                   4443322           345566666666666544444433      245666666


Q ss_pred             -eccce--ecCCCC-CCCCCCCeecccCC
Q 048551          357 -YNHFD--GEVPTK-GVFNNKTRISLAGN  381 (409)
Q Consensus       357 -~n~l~--~~~p~~-~~~~~L~~L~l~~N  381 (409)
                       +|.+.  +..|.. ..+++|+.+++++|
T Consensus       302 ~~N~~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          302 FNNPVPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             CSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             ecCcccccccCcccccccchhhhhhcccc
Confidence             55554  222222 44566666666665

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.98  E-value=3.7e-31  Score=250.08  Aligned_cols=277  Identities=19%  Similarity=0.259  Sum_probs=233.5

Q ss_pred             CCCCCceeeecC-------------CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEc
Q 048551           57 VNLCEWTGVTCA-------------SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFA  123 (409)
Q Consensus        57 ~~~c~~~g~~c~-------------~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  123 (409)
                      ...|.|..+.|.             .+++|++++|++++..+..|.++++|++|++++|.+++..|..|..+++|++|++
T Consensus        28 ~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           28 RCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             TCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            346688888885             6899999999999777778999999999999999999888999999999999999


Q ss_pred             CCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCC--CCCCCCCCCCCCcEEEccCCcCc
Q 048551          124 NRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGG--KIPESPGQLRSLFYLNVGGNQFS  201 (409)
Q Consensus       124 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~  201 (409)
                      ++|.++ .+|..+.  ++|++|++++|.+++..+..+.++++|++|++++|.+..  ..+..+.++++|++|++++|.++
T Consensus       108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  184 (330)
T ss_dssp             CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence            999999 6776654  799999999999997777789999999999999999964  66778899999999999999999


Q ss_pred             ccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh
Q 048551          202 GMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA  281 (409)
Q Consensus       202 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~  281 (409)
                      ..+..+.  ++|++|++++|.+++..|..+. .+++|++|++++|.+++..+..+..+++|++|++++|+++        
T Consensus       185 ~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--------  253 (330)
T 1xku_A          185 TIPQGLP--PSLTELHLDGNKITKVDAASLK-GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV--------  253 (330)
T ss_dssp             SCCSSCC--TTCSEEECTTSCCCEECTGGGT-TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS--------
T ss_pred             cCCcccc--ccCCEEECCCCcCCccCHHHhc-CCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc--------
Confidence            8655443  8999999999999966667776 8999999999999999887778999999999999999986        


Q ss_pred             hcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhc------CCCCcEEE
Q 048551          282 ATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVN------LSFLVLLN  355 (409)
Q Consensus       282 l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~  355 (409)
                                             .+|..+.           .+++|++|++++|+|++..+..|..      .+.++.++
T Consensus       254 -----------------------~lp~~l~-----------~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~  299 (330)
T 1xku_A          254 -----------------------KVPGGLA-----------DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS  299 (330)
T ss_dssp             -----------------------SCCTTTT-----------TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEE
T ss_pred             -----------------------cCChhhc-----------cCCCcCEEECCCCcCCccChhhcCCcccccccccccceE
Confidence                                   4565543           3477899999999999776666643      37899999


Q ss_pred             e-ecccee-cCC-CC-CCCCCCCeecccCC
Q 048551          356 L-YNHFDG-EVP-TK-GVFNNKTRISLAGN  381 (409)
Q Consensus       356 L-~n~l~~-~~p-~~-~~~~~L~~L~l~~N  381 (409)
                      + +|.+.. .++ .. ..+.+++.+++++|
T Consensus       300 l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          300 LFSNPVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             CCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             eecCcccccccCccccccccceeEEEeccc
Confidence            9 887753 232 22 56788999999988

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.98  E-value=6.8e-31  Score=260.00  Aligned_cols=290  Identities=24%  Similarity=0.307  Sum_probs=188.9

Q ss_pred             cCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEE
Q 048551           67 CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS  146 (409)
Q Consensus        67 c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  146 (409)
                      +.++++|++++|.+++. +. +..+++|++|++++|.+++..+  +..+++|++|++++|.+++ ++. +..+++|++|+
T Consensus        67 l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~  140 (466)
T 1o6v_A           67 LNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD-IDP-LKNLTNLNRLE  140 (466)
T ss_dssp             CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG-GTTCTTCSEEE
T ss_pred             hcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCC-ChH-HcCCCCCCEEE
Confidence            55899999999999854 43 8899999999999999986544  8899999999999999985 443 88899999999


Q ss_pred             eecccccccCCc--------------------cccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcc
Q 048551          147 FCVIKLTGQLPA--------------------SIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLP  206 (409)
Q Consensus       147 L~~n~l~~~~p~--------------------~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  206 (409)
                      +++|.+++ ++.                    .+.++++|++|++++|.+.+.  ..+..+++|++|++++|.+.+..+ 
T Consensus       141 l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-  216 (466)
T 1o6v_A          141 LSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-  216 (466)
T ss_dssp             EEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred             CCCCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc-
Confidence            99998874 332                    133445555555555555422  124455555555555555554433 


Q ss_pred             cCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh-hccc
Q 048551          207 VYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA-ATSY  285 (409)
Q Consensus       207 ~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-l~~l  285 (409)
                      +..+++|+.|++++|.++ .++ .+. .+++|++|++++|.+++..+  +..+++|++|++++|++++.+.  +. ++++
T Consensus       217 ~~~l~~L~~L~l~~n~l~-~~~-~l~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L  289 (466)
T 1o6v_A          217 LGILTNLDELSLNGNQLK-DIG-TLA-SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTAL  289 (466)
T ss_dssp             GGGCTTCCEEECCSSCCC-CCG-GGG-GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred             ccccCCCCEEECCCCCcc-cch-hhh-cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCcc
Confidence            444555666666666555 332 233 55666666666666654433  5566666666666666655432  11 3333


Q ss_pred             CcEEecccCCccccccccccCChhccCCCCCCccc-----------cCCCCCCCEEECcCCccccccchhhhcCCCCcEE
Q 048551          286 SQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLA-----------TDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLL  354 (409)
Q Consensus       286 ~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~-----------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  354 (409)
                       +.|++++|.+.       .++. +..+++|+.|+           +..+++|++|++++|++++.  ..+..+++|++|
T Consensus       290 -~~L~L~~n~l~-------~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L  358 (466)
T 1o6v_A          290 -TNLELNENQLE-------DISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV--SSLANLTNINWL  358 (466)
T ss_dssp             -SEEECCSSCCS-------CCGG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEE
T ss_pred             -CeEEcCCCccc-------Cchh-hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCc--hhhccCCCCCEE
Confidence             66666666665       2332 55666666666           34566777777777777753  356677777777


Q ss_pred             Ee-eccceecCCCCCCCCCCCeecccCCCCcee
Q 048551          355 NL-YNHFDGEVPTKGVFNNKTRISLAGNGKLCG  386 (409)
Q Consensus       355 ~L-~n~l~~~~p~~~~~~~L~~L~l~~Np~l~g  386 (409)
                      ++ +|++.+..| ...+++|+.|++++|+ +++
T Consensus       359 ~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-~~~  389 (466)
T 1o6v_A          359 SAGHNQISDLTP-LANLTRITQLGLNDQA-WTN  389 (466)
T ss_dssp             ECCSSCCCBCGG-GTTCTTCCEEECCCEE-EEC
T ss_pred             eCCCCccCccch-hhcCCCCCEEeccCCc-ccC
Confidence            77 777776666 3567777777777773 444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=1.7e-31  Score=272.19  Aligned_cols=293  Identities=19%  Similarity=0.181  Sum_probs=225.1

Q ss_pred             cCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEE
Q 048551           67 CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS  146 (409)
Q Consensus        67 c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  146 (409)
                      +.+|++|++++|.+++..|..|+.+++|++|+|++|.+++..|..|+.+++|++|++++|.+++..+..|+.+++|++|+
T Consensus        74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  153 (597)
T 3oja_B           74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS  153 (597)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence            35899999999999988888999999999999999999988888899999999999999999955555579999999999


Q ss_pred             eecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCccc-------------------Cccc
Q 048551          147 FCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGM-------------------FLPV  207 (409)
Q Consensus       147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------------~~~~  207 (409)
                      +++|.+++..|..+.++++|++|++++|.+++..   +..+++|+.|++++|.+++.                   ... 
T Consensus       154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~-  229 (597)
T 3oja_B          154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP-  229 (597)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS-
T ss_pred             eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc-
Confidence            9999999888888999999999999999998643   34456666666666655542                   221 


Q ss_pred             CCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCc
Q 048551          208 YNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQ  287 (409)
Q Consensus       208 ~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~  287 (409)
                       ..++|+.|++++|.+++  +..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|++++.+.....++++ +
T Consensus       230 -~~~~L~~L~L~~n~l~~--~~~l~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L-~  304 (597)
T 3oja_B          230 -VNVELTILKLQHNNLTD--TAWLL-NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTL-K  304 (597)
T ss_dssp             -CCSCCCEEECCSSCCCC--CGGGG-GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTC-C
T ss_pred             -cCCCCCEEECCCCCCCC--Chhhc-cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCC-c
Confidence             12467777777777764  24444 6777888888888777777777777777888888887777755332224445 7


Q ss_pred             EEecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCC
Q 048551          288 RLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPT  366 (409)
Q Consensus       288 ~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~  366 (409)
                      .|++++|.+.       .+|..+..           +++|++|++++|++++. +  +..+++|++|++ +|.+.+....
T Consensus       305 ~L~Ls~N~l~-------~i~~~~~~-----------l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~  363 (597)
T 3oja_B          305 VLDLSHNHLL-------HVERNQPQ-----------FDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR  363 (597)
T ss_dssp             EEECCSSCCC-------CCGGGHHH-----------HTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH
T ss_pred             EEECCCCCCC-------ccCccccc-----------CCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH
Confidence            7778777776       56655543           46779999999999954 3  667899999999 8988765432


Q ss_pred             CCCCCCCCeecccCCCCceecCCC
Q 048551          367 KGVFNNKTRISLAGNGKLCGGFDG  390 (409)
Q Consensus       367 ~~~~~~L~~L~l~~Np~l~g~~p~  390 (409)
                       ..+..+....+.+++..|+..+.
T Consensus       364 -~~~~~~~~~~~~~~~~~C~~~~~  386 (597)
T 3oja_B          364 -ALFRNVARPAVDDADQHCKIDYQ  386 (597)
T ss_dssp             -HHTTTCCTTTBCCCCCCCCTTCE
T ss_pred             -HHHHHHhhhccccccccCCcchh
Confidence             23555555667788888876544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=6e-31  Score=254.40  Aligned_cols=292  Identities=18%  Similarity=0.181  Sum_probs=215.6

Q ss_pred             cCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEE
Q 048551           67 CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS  146 (409)
Q Consensus        67 c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  146 (409)
                      +.++++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.++...+..++.+++|++|+
T Consensus        68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  147 (390)
T 3o6n_A           68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS  147 (390)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEE
Confidence            34899999999999977777999999999999999999988888899999999999999999943344478999999999


Q ss_pred             eecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-----------------ccCC
Q 048551          147 FCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-----------------PVYN  209 (409)
Q Consensus       147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------------~~~~  209 (409)
                      +++|.+++..|..+.++++|++|++++|.+++..   +..+++|++|++++|.+++...                 ....
T Consensus       148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~  224 (390)
T 3o6n_A          148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV  224 (390)
T ss_dssp             CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCC
T ss_pred             CCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccccCCCCcceEEECCCCeeeeccccc
Confidence            9999999877888999999999999999998542   4455666666666665554211                 0112


Q ss_pred             CCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEE
Q 048551          210 LSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRL  289 (409)
Q Consensus       210 l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L  289 (409)
                      .++|+.|++++|.+++ . ..+. .+++|++|++++|.+++..|..+..+++|++|++++|++++.+.....++++ +.|
T Consensus       225 ~~~L~~L~l~~n~l~~-~-~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L-~~L  300 (390)
T 3o6n_A          225 NVELTILKLQHNNLTD-T-AWLL-NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTL-KVL  300 (390)
T ss_dssp             CSSCCEEECCSSCCCC-C-GGGG-GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTC-CEE
T ss_pred             cccccEEECCCCCCcc-c-HHHc-CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCC-CEE
Confidence            3466666777776663 2 3344 5677777777777777666667777777777777777776654322223444 677


Q ss_pred             ecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCCC
Q 048551          290 NDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTKG  368 (409)
Q Consensus       290 ~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~~  368 (409)
                      ++++|.+.       .+|..+..           +++|++|++++|++++. +  +..+++|++|++ +|.+...-.. .
T Consensus       301 ~L~~n~l~-------~~~~~~~~-----------l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~  358 (390)
T 3o6n_A          301 DLSHNHLL-------HVERNQPQ-----------FDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-A  358 (390)
T ss_dssp             ECCSSCCC-------CCGGGHHH-----------HTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-H
T ss_pred             ECCCCcce-------ecCccccc-----------cCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-H
Confidence            77777665       45554433           47789999999999954 4  678899999999 8888764322 3


Q ss_pred             CCCCCCeecccCCCCceec
Q 048551          369 VFNNKTRISLAGNGKLCGG  387 (409)
Q Consensus       369 ~~~~L~~L~l~~Np~l~g~  387 (409)
                      .+..+....+.+++..|+.
T Consensus       359 ~~~~~~~~~~~~~~~~c~~  377 (390)
T 3o6n_A          359 LFRNVARPAVDDADQHCKI  377 (390)
T ss_dssp             HTTTCCTTTBCCCCSCCCT
T ss_pred             HHHHHHhhcccccCceecc
Confidence            4555666667778777753

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.97  E-value=1.5e-30  Score=256.35  Aligned_cols=290  Identities=15%  Similarity=0.122  Sum_probs=169.1

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC  148 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  148 (409)
                      ++++|++++|++++ +|  ++.+++|++|++++|.+++. +  +..+++|++|++++|++++ +|  ++.+++|++|+++
T Consensus        65 ~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~  135 (457)
T 3bz5_A           65 GLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCA  135 (457)
T ss_dssp             TCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECT
T ss_pred             CCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECC
Confidence            45555555555543 22  44455555555555555432 2  4445555555555555543 22  4455555555555


Q ss_pred             cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCc
Q 048551          149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLP  228 (409)
Q Consensus       149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p  228 (409)
                      +|.+++ ++  ++.+++|++|++++|...+.+  .+..+++|++|++++|.+++.+  +..+++|+.|++++|.+++ ++
T Consensus       136 ~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~-~~  207 (457)
T 3bz5_A          136 RNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITK-LD  207 (457)
T ss_dssp             TSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSC-CC
T ss_pred             CCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCe-ec
Confidence            555543 21  444555555555555333333  2455566666666666666542  5566666666666666663 32


Q ss_pred             hHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh-hc-------ccCcEEecccCCccccc
Q 048551          229 PVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA-AT-------SYSQRLNDDDQNHHGRQ  300 (409)
Q Consensus       229 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-l~-------~l~~~L~l~~n~l~~~~  300 (409)
                        +. .+++|++|++++|++++ +|  +..+++|+.|++++|++++.+...+. +.       .+ +.+++++|.+.|.+
T Consensus       208 --l~-~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L-~~L~l~~n~~~~~~  280 (457)
T 3bz5_A          208 --LN-QNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDL-LEIDLTHNTQLIYF  280 (457)
T ss_dssp             --CT-TCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCC-SCCCCTTCTTCCEE
T ss_pred             --cc-cCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCC-CEEECCCCccCCcc
Confidence              33 56777777777777775 44  66677777777777777766533322 21       12 44444544443211


Q ss_pred             -----ccc-----------ccCChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceec
Q 048551          301 -----QNI-----------CYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGE  363 (409)
Q Consensus       301 -----~~l-----------~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~  363 (409)
                           +.+           +.+|.   ....|+.++++++++|++|++++|++++. +  +..+++|++|++ +|++.+ 
T Consensus       281 ~~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~-  353 (457)
T 3bz5_A          281 QAEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD-  353 (457)
T ss_dssp             ECTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB-
T ss_pred             cccccccCCEEECCCCcccceecc---CCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC-
Confidence                 111           22221   23456677788889999999999999974 3  889999999999 888876 


Q ss_pred             CCCCC-------------CCCCCCeecccCCCCceecCCC
Q 048551          364 VPTKG-------------VFNNKTRISLAGNGKLCGGFDG  390 (409)
Q Consensus       364 ~p~~~-------------~~~~L~~L~l~~Np~l~g~~p~  390 (409)
                      ++...             .+..+..+++++| .++|.||.
T Consensus       354 l~~L~~L~l~~n~l~g~~~~~~l~~l~l~~N-~l~g~ip~  392 (457)
T 3bz5_A          354 FSSVGKIPALNNNFEAEGQTITMPKETLTNN-SLTIAVSP  392 (457)
T ss_dssp             CTTGGGSSGGGTSEEEEEEEEECCCBCCBTT-BEEEECCT
T ss_pred             ccccccccccCCcEEecceeeecCccccccC-cEEEEcCh
Confidence            33211             1245678899999 89999997

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.97  E-value=1.2e-30  Score=267.31  Aligned_cols=312  Identities=21%  Similarity=0.172  Sum_probs=219.5

Q ss_pred             cCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEE
Q 048551           67 CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS  146 (409)
Q Consensus        67 c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  146 (409)
                      +.+|++|+|++|+|++..|.+|.++++|++|+|++|++++..+..|.++++|++|++++|++++..+..|+++++|++|+
T Consensus        75 l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~  154 (635)
T 4g8a_A           75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN  154 (635)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeec
Confidence            45899999999999977777899999999999999999977677899999999999999999976666799999999999


Q ss_pred             eecccccc-cCCccccCCCCCcEEeCCCCCCCCCCCCCCCC---------------------------------------
Q 048551          147 FCVIKLTG-QLPASIQNLSSHLEADSNRNNFGGKIPESPGQ---------------------------------------  186 (409)
Q Consensus       147 L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~---------------------------------------  186 (409)
                      +++|.+++ ..|..++.+++|++|++++|++++..+..+..                                       
T Consensus       155 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n  234 (635)
T 4g8a_A          155 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN  234 (635)
T ss_dssp             CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred             cccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcc
Confidence            99999975 46788899999999999999876433221110                                       


Q ss_pred             --------------------------------------------------------------------------------
Q 048551          187 --------------------------------------------------------------------------------  186 (409)
Q Consensus       187 --------------------------------------------------------------------------------  186 (409)
                                                                                                      
T Consensus       235 ~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~  314 (635)
T 4g8a_A          235 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLV  314 (635)
T ss_dssp             CSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEE
T ss_pred             cccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccc
Confidence                                                                                            


Q ss_pred             ------------CCCCcEEEccCCcCcccCc--------------------ccCCCCCCcEEEeecCcCcc--cCchHHh
Q 048551          187 ------------LRSLFYLNVGGNQFSGMFL--------------------PVYNLSSLEMIYLHDNRLNG--NLPPVIG  232 (409)
Q Consensus       187 ------------l~~L~~L~l~~n~l~~~~~--------------------~~~~l~~L~~L~l~~n~l~~--~~p~~~~  232 (409)
                                  ..+++.|++.+|.+.....                    ....+++|+.+++++|.+..  ..+....
T Consensus       315 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~  394 (635)
T 4g8a_A          315 SVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF  394 (635)
T ss_dssp             SCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHH
T ss_pred             ccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchh
Confidence                        1122333333332221110                    11235667777777777642  2334443


Q ss_pred             hCCCccceeeccccccccccch-------------------------hhhcCCCCCEEEcccCcCccccchhhh-hcccC
Q 048551          233 AKLPNLRKIVIALNNFTGPLPD-------------------------SFSNASNRERLELSYNQFRGKSIWRSA-ATSYS  286 (409)
Q Consensus       233 ~~l~~L~~L~L~~n~l~~~~p~-------------------------~l~~l~~L~~L~Ls~N~l~~~~~~~~~-l~~l~  286 (409)
                       .+.+|+.+++..+.+.. .+.                         .+..+++++.+++++|.+.+.....+. ...+ 
T Consensus       395 -~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L-  471 (635)
T 4g8a_A          395 -GTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-  471 (635)
T ss_dssp             -SCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC-
T ss_pred             -hhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhh-
Confidence             45555555555554432 222                         234444455555555554443322222 2233 


Q ss_pred             cEEecccCCccccccccccCChhccCCCCCCccc-------------cCCCCCCCEEECcCCccccccchhhhcCCCCcE
Q 048551          287 QRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLA-------------TDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVL  353 (409)
Q Consensus       287 ~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~-------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  353 (409)
                      +.|++++|.+.+     ..+|..+..+++|++|+             |.++++|++|+|++|+|++..|..+..+++|++
T Consensus       472 ~~L~Ls~N~~~~-----~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  546 (635)
T 4g8a_A          472 EVLKMAGNSFQE-----NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV  546 (635)
T ss_dssp             CEEECTTCEEGG-----GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCE
T ss_pred             hhhhhhhccccc-----ccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCE
Confidence            566666665431     23455667777777777             667899999999999999888889999999999


Q ss_pred             EEe-eccceecCCCC-CCC-CCCCeecccCCCCcee
Q 048551          354 LNL-YNHFDGEVPTK-GVF-NNKTRISLAGNGKLCG  386 (409)
Q Consensus       354 L~L-~n~l~~~~p~~-~~~-~~L~~L~l~~Np~l~g  386 (409)
                      |++ +|++++..|.. ..+ ++|+.|++++||+.|.
T Consensus       547 L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          547 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             EECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             EECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence            999 99999888876 455 6899999999999984

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.97  E-value=6.9e-30  Score=251.63  Aligned_cols=285  Identities=19%  Similarity=0.169  Sum_probs=233.4

Q ss_pred             cCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEE
Q 048551           67 CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS  146 (409)
Q Consensus        67 c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  146 (409)
                      +.++++|++++|.+++ +| .+..+++|++|++++|.+++. |  +..+++|++|++++|.+++ ++  ++.+++|++|+
T Consensus        41 l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~  112 (457)
T 3bz5_A           41 LATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLN  112 (457)
T ss_dssp             HTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEE
T ss_pred             cCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEE
Confidence            4599999999999995 46 799999999999999999964 4  8899999999999999996 44  89999999999


Q ss_pred             eecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCccc
Q 048551          147 FCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGN  226 (409)
Q Consensus       147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~  226 (409)
                      +++|.+++ +|  ++.+++|++|++++|++++.   .++.+++|++|++++|...+.. .+..+++|+.|++++|.++ .
T Consensus       113 L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~-~  184 (457)
T 3bz5_A          113 CDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKIT-E  184 (457)
T ss_dssp             CCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCC-C
T ss_pred             CCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCccc-e
Confidence            99999995 44  88999999999999999964   3889999999999999655544 5788999999999999999 4


Q ss_pred             CchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccC
Q 048551          227 LPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYL  306 (409)
Q Consensus       227 ~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~i  306 (409)
                      +|  +. .+++|+.|++++|.+++.   .+..+++|+.|++++|++++.++..  ++++ +.|++++|.+++       +
T Consensus       185 l~--l~-~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip~~~--l~~L-~~L~l~~N~l~~-------~  248 (457)
T 3bz5_A          185 LD--VS-QNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEIDVTP--LTQL-TYFDCSVNPLTE-------L  248 (457)
T ss_dssp             CC--CT-TCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCCCTT--CTTC-SEEECCSSCCSC-------C
T ss_pred             ec--cc-cCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccCccc--cCCC-CEEEeeCCcCCC-------c
Confidence            66  54 889999999999999965   3889999999999999999966322  4455 999999999984       2


Q ss_pred             C-hhccCCC-------CCCccc-----------cCCCCCCCEEECcCCccccccch--------hhhcCCCCcEEEe-ec
Q 048551          307 P-TGISNLV-------NLDSLA-----------TDSLKSIEELDLSSNNLSGQLPR--------LLVNLSFLVLLNL-YN  358 (409)
Q Consensus       307 p-~~~~~l~-------~L~~L~-----------~~~l~~L~~L~Ls~N~l~~~~p~--------~~~~l~~L~~L~L-~n  358 (409)
                      | ..+..++       +|+.++           +..+++|+.|++++|+..+.+|.        .+..+++|++|++ +|
T Consensus       249 ~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N  328 (457)
T 3bz5_A          249 DVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT  328 (457)
T ss_dssp             CCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC
T ss_pred             CHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC
Confidence            2 1222221       334444           34568888888888887666664        2556788999999 88


Q ss_pred             cceecCCCCCCCCCCCeecccCCCCcee
Q 048551          359 HFDGEVPTKGVFNNKTRISLAGNGKLCG  386 (409)
Q Consensus       359 ~l~~~~p~~~~~~~L~~L~l~~Np~l~g  386 (409)
                      ++++. + ...+++|+.|++++| .+.|
T Consensus       329 ~l~~l-~-l~~l~~L~~L~l~~N-~l~~  353 (457)
T 3bz5_A          329 ELTEL-D-VSHNTKLKSLSCVNA-HIQD  353 (457)
T ss_dssp             CCSCC-C-CTTCTTCSEEECCSS-CCCB
T ss_pred             ccccc-c-cccCCcCcEEECCCC-CCCC
Confidence            88874 4 467899999999999 6765

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.97  E-value=7e-30  Score=252.71  Aligned_cols=268  Identities=24%  Similarity=0.310  Sum_probs=223.3

Q ss_pred             cCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCC-------------
Q 048551           67 CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIP-------------  133 (409)
Q Consensus        67 c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-------------  133 (409)
                      +.++++|++++|.+++..+  +..+++|++|++++|.+++..+  +..+++|++|++++|.+++ ++             
T Consensus        89 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l  163 (466)
T 1o6v_A           89 LTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSF  163 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEE
T ss_pred             cccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCC-ChhhccCCcccEeec
Confidence            4589999999999985444  8899999999999999985433  8889999999999888774 22             


Q ss_pred             -------cccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcc
Q 048551          134 -------AEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLP  206 (409)
Q Consensus       134 -------~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  206 (409)
                             ..+..+++|++|++++|.+++ + ..+..+++|++|++++|.+.+..|  ++.+++|++|++++|.+++. +.
T Consensus       164 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~  238 (466)
T 1o6v_A          164 GNQVTDLKPLANLTTLERLDISSNKVSD-I-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-GT  238 (466)
T ss_dssp             EESCCCCGGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG
T ss_pred             CCcccCchhhccCCCCCEEECcCCcCCC-C-hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-hh
Confidence                   125677889999999999884 3 358899999999999999987655  77899999999999999875 46


Q ss_pred             cCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh-hccc
Q 048551          207 VYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA-ATSY  285 (409)
Q Consensus       207 ~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-l~~l  285 (409)
                      +..+++|+.|++++|.+++. ++ +. .+++|++|++++|.+++..+  +..+++|+.|++++|++++.+.  +. ++++
T Consensus       239 l~~l~~L~~L~l~~n~l~~~-~~-~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L  311 (466)
T 1o6v_A          239 LASLTNLTDLDLANNQISNL-AP-LS-GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL  311 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCCC-GG-GT-TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred             hhcCCCCCEEECCCCccccc-hh-hh-cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCC
Confidence            78899999999999999854 44 54 89999999999999996544  8899999999999999998653  22 4555


Q ss_pred             CcEEecccCCccccccccccCChhccCCCCCCccc-----------cCCCCCCCEEECcCCccccccchhhhcCCCCcEE
Q 048551          286 SQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLA-----------TDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLL  354 (409)
Q Consensus       286 ~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~-----------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  354 (409)
                       +.|++++|.++      + ++. +..+++|+.|+           +.++++|+.|++++|++++..|  +..+++|+.|
T Consensus       312 -~~L~L~~n~l~------~-~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  380 (466)
T 1o6v_A          312 -TYLTLYFNNIS------D-ISP-VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQL  380 (466)
T ss_dssp             -SEEECCSSCCS------C-CGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEE
T ss_pred             -CEEECcCCcCC------C-chh-hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccch--hhcCCCCCEE
Confidence             99999999998      2 332 66778888887           5678999999999999998777  8899999999


Q ss_pred             Ee-ecccee
Q 048551          355 NL-YNHFDG  362 (409)
Q Consensus       355 ~L-~n~l~~  362 (409)
                      ++ +|.+++
T Consensus       381 ~l~~n~~~~  389 (466)
T 1o6v_A          381 GLNDQAWTN  389 (466)
T ss_dssp             ECCCEEEEC
T ss_pred             eccCCcccC
Confidence            99 888876

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=4.5e-31  Score=247.66  Aligned_cols=229  Identities=26%  Similarity=0.399  Sum_probs=167.1

Q ss_pred             CCCEEEccCCcccc--cCCccccCCCCCcEEEcCC-CcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEE
Q 048551           93 RLEKLILANNSFSG--TIPTNLSLRSKLMLFFANR-NILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEA  169 (409)
Q Consensus        93 ~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  169 (409)
                      ++++|++++|.+++  .+|..+..+++|++|++++ |.+.+.+|..++++++|++|++++|.+++.+|..+         
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~---------  121 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL---------  121 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG---------
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH---------
Confidence            45556666665555  4555555555555555552 55555555555555555555555555554444444         


Q ss_pred             eCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccCchHHhhCCC-ccceeeccccc
Q 048551          170 DSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLP-NLRKIVIALNN  247 (409)
Q Consensus       170 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~-~L~~L~L~~n~  247 (409)
                                     .++++|++|++++|.+++..+ .+..+++|++|++++|.+++.+|..++ .++ +|++|++++|.
T Consensus       122 ---------------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~  185 (313)
T 1ogq_A          122 ---------------SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNR  185 (313)
T ss_dssp             ---------------GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSE
T ss_pred             ---------------hCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCe
Confidence                           444555555555555554444 566677777788888888888898888 777 99999999999


Q ss_pred             cccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCC
Q 048551          248 FTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSI  327 (409)
Q Consensus       248 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L  327 (409)
                      +++.+|..+..++ |++|++++|++++                              .+|..+           ..+++|
T Consensus       186 l~~~~~~~~~~l~-L~~L~Ls~N~l~~------------------------------~~~~~~-----------~~l~~L  223 (313)
T 1ogq_A          186 LTGKIPPTFANLN-LAFVDLSRNMLEG------------------------------DASVLF-----------GSDKNT  223 (313)
T ss_dssp             EEEECCGGGGGCC-CSEEECCSSEEEE------------------------------CCGGGC-----------CTTSCC
T ss_pred             eeccCChHHhCCc-ccEEECcCCcccC------------------------------cCCHHH-----------hcCCCC
Confidence            9999999999987 9999999999874                              334433           345788


Q ss_pred             CEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-CCCCCCCeecccCCCCceecCCC
Q 048551          328 EELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-GVFNNKTRISLAGNGKLCGGFDG  390 (409)
Q Consensus       328 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~~~~~L~~L~l~~Np~l~g~~p~  390 (409)
                      ++|++++|++++.+|. +..+++|++|++ +|++.+.+|.. ..+++|+.|++++| .++|.+|+
T Consensus       224 ~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~ip~  286 (313)
T 1ogq_A          224 QKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN-NLCGEIPQ  286 (313)
T ss_dssp             SEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS-EEEEECCC
T ss_pred             CEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC-cccccCCC
Confidence            9999999999976665 888999999999 99999999976 78899999999999 79999997

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=4.9e-31  Score=246.55  Aligned_cols=276  Identities=20%  Similarity=0.236  Sum_probs=205.4

Q ss_pred             CCCCceeeecCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCcc--CCcc
Q 048551           58 NLCEWTGVTCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGE--IPAE  135 (409)
Q Consensus        58 ~~c~~~g~~c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~p~~  135 (409)
                      ..|.|.++.|        ++++++ .+|..+.  ++|++|++++|.++...+..|..+++|++|++++|.++..  .+..
T Consensus         5 C~C~~~~l~c--------~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~   73 (306)
T 2z66_A            5 CSCSGTEIRC--------NSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS   73 (306)
T ss_dssp             CEEETTEEEC--------CSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH
T ss_pred             CeeCCCEEEc--------CCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc
Confidence            3466665555        566677 6676554  6899999999999854445578999999999999998732  3566


Q ss_pred             cCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCC-CCCCCCCCCcEEEccCCcCcccCc-ccCCCCCC
Q 048551          136 IGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIP-ESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSL  213 (409)
Q Consensus       136 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L  213 (409)
                      +..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+ .+..+++|
T Consensus        74 ~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  152 (306)
T 2z66_A           74 DFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL  152 (306)
T ss_dssp             HHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC
T ss_pred             cccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC
Confidence            777899999999999988 577778899999999999999886554 578888999999999999888777 67888999


Q ss_pred             cEEEeecCcCcc-cCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecc
Q 048551          214 EMIYLHDNRLNG-NLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDD  292 (409)
Q Consensus       214 ~~L~l~~n~l~~-~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~  292 (409)
                      ++|++++|.+++ .+|..+. .+++|++|++++|.+++..|..+..+++|++|++++|++++.+.               
T Consensus       153 ~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---------------  216 (306)
T 2z66_A          153 EVLKMAGNSFQENFLPDIFT-ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT---------------  216 (306)
T ss_dssp             CEEECTTCEEGGGEECSCCT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS---------------
T ss_pred             CEEECCCCccccccchhHHh-hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh---------------
Confidence            999999998885 3566665 78899999999999987778888889999999999998875321               


Q ss_pred             cCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCC-CCcEEEe-eccceecCCCC---
Q 048551          293 DQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLS-FLVLLNL-YNHFDGEVPTK---  367 (409)
Q Consensus       293 ~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L-~n~l~~~~p~~---  367 (409)
                                     ..           +..+++|++|++++|++++..|..+..++ +|++|++ +|.+.+..+..   
T Consensus       217 ---------------~~-----------~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~  270 (306)
T 2z66_A          217 ---------------FP-----------YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFL  270 (306)
T ss_dssp             ---------------GG-----------GTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHH
T ss_pred             ---------------hh-----------ccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHH
Confidence                           11           23346667777777777777777777764 7777777 77766543321   


Q ss_pred             CCCCCCCeecccCCCCceec
Q 048551          368 GVFNNKTRISLAGNGKLCGG  387 (409)
Q Consensus       368 ~~~~~L~~L~l~~Np~l~g~  387 (409)
                      ..+...+.+.+..+...|..
T Consensus       271 ~~l~~~~~~~~~~~~~~C~~  290 (306)
T 2z66_A          271 QWIKDQRQLLVEVERMECAT  290 (306)
T ss_dssp             HHHHHTGGGBSCGGGCBEEE
T ss_pred             HHHHhhhhhhccccccccCC
Confidence            22333444555555555544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=4.1e-29  Score=237.53  Aligned_cols=267  Identities=22%  Similarity=0.325  Sum_probs=219.6

Q ss_pred             cCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEE
Q 048551           67 CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS  146 (409)
Q Consensus        67 c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  146 (409)
                      |.++++|++++|.++ .++. +..+++|++|++++|.+++ + +.+..+++|++|++++|.+++ ++. +..+++|++|+
T Consensus        65 ~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~  138 (347)
T 4fmz_A           65 LTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLN  138 (347)
T ss_dssp             CTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEE
T ss_pred             cCCccEEEccCCccc-cchh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccC-chh-hccCCceeEEE
Confidence            569999999999999 4444 9999999999999999985 3 368999999999999999984 444 88999999999


Q ss_pred             eecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCccc
Q 048551          147 FCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGN  226 (409)
Q Consensus       147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~  226 (409)
                      +++|..... +..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..+ +..+++|+.+++++|.++ .
T Consensus       139 l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~-~  213 (347)
T 4fmz_A          139 LGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQIT-D  213 (347)
T ss_dssp             CTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCC-C
T ss_pred             CCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCC-C
Confidence            999976644 4458999999999999999885443  7889999999999999987654 778899999999999998 4


Q ss_pred             CchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh-hcccCcEEecccCCcccccccccc
Q 048551          227 LPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA-ATSYSQRLNDDDQNHHGRQQNICY  305 (409)
Q Consensus       227 ~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-l~~l~~~L~l~~n~l~~~~~~l~~  305 (409)
                      ++. +. .+++|++|++++|.+++..+  +..+++|++|++++|++++..  .+. ++++ +.|++++|.++       .
T Consensus       214 ~~~-~~-~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L-~~L~l~~n~l~-------~  279 (347)
T 4fmz_A          214 ITP-VA-NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN--AVKDLTKL-KMLNVGSNQIS-------D  279 (347)
T ss_dssp             CGG-GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTC-CEEECCSSCCC-------C
T ss_pred             Cch-hh-cCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh--hHhcCCCc-CEEEccCCccC-------C
Confidence            444 44 78999999999999985443  888999999999999988753  222 4455 89999999887       4


Q ss_pred             CChhccCCCCCCccc-------------cCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccce
Q 048551          306 LPTGISNLVNLDSLA-------------TDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFD  361 (409)
Q Consensus       306 ip~~~~~l~~L~~L~-------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~  361 (409)
                      + ..+..+++|+.|+             +.++++|++|++++|++++..|  +..+++|++|++ +|.++
T Consensus       280 ~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          280 I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            4 3467778888887             4568999999999999997666  889999999999 77764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.97  E-value=6.5e-29  Score=243.98  Aligned_cols=201  Identities=18%  Similarity=0.160  Sum_probs=166.0

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC  148 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  148 (409)
                      ..+.++.++++++ .+|..+.  +++++|+|++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            3456677777887 7777665  688999999999987777888999999999999999987777788889999999999


Q ss_pred             cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCC-cCcccCc-ccCCCCCCcEEEeecCcCccc
Q 048551          149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGN-QFSGMFL-PVYNLSSLEMIYLHDNRLNGN  226 (409)
Q Consensus       149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~l~~L~~L~l~~n~l~~~  226 (409)
                      +|+++...+..|..+++|++|++++|.+.+..+..|.++++|++|++++| .+....+ .+.++++|+.|++++|.++ .
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~  199 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E  199 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence            99998655567888999999999999988777778888999999999884 4454444 6788889999999999888 6


Q ss_pred             CchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccc
Q 048551          227 LPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGK  275 (409)
Q Consensus       227 ~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  275 (409)
                      +|. +. .+++|++|++++|.+++..|..|.++++|+.|++++|++++.
T Consensus       200 ~~~-~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  246 (440)
T 3zyj_A          200 IPN-LT-PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI  246 (440)
T ss_dssp             CCC-CT-TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred             ccc-cC-CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEE
Confidence            764 44 788899999999999887788888899999999999888754

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.97  E-value=6.2e-29  Score=244.95  Aligned_cols=201  Identities=18%  Similarity=0.159  Sum_probs=160.3

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC  148 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  148 (409)
                      ..+.++.++.+++ .+|..+.  +++++|+|++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            3456677777777 6776554  678888888888887778888888888888888888887777788888888888888


Q ss_pred             cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCC-cCcccCc-ccCCCCCCcEEEeecCcCccc
Q 048551          149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGN-QFSGMFL-PVYNLSSLEMIYLHDNRLNGN  226 (409)
Q Consensus       149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~l~~L~~L~l~~n~l~~~  226 (409)
                      +|.+++..+..+..+++|++|++++|.+.+..+..|.++++|++|++++| .+....+ .+.++++|+.|++++|.++ .
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~  210 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-D  210 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-S
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-c
Confidence            88888665666888888888888888888666677888888888888884 4444444 6778888888888888887 5


Q ss_pred             CchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccc
Q 048551          227 LPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGK  275 (409)
Q Consensus       227 ~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  275 (409)
                      +|. +. .+++|++|++++|.+++..|..|.++++|+.|++++|++++.
T Consensus       211 ~~~-~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  257 (452)
T 3zyi_A          211 MPN-LT-PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI  257 (452)
T ss_dssp             CCC-CT-TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEE
T ss_pred             ccc-cc-ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceE
Confidence            553 44 678888888888888877788888888888888888888754

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=3.6e-29  Score=236.19  Aligned_cols=231  Identities=20%  Similarity=0.162  Sum_probs=201.7

Q ss_pred             CCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEE
Q 048551           90 NLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEA  169 (409)
Q Consensus        90 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  169 (409)
                      ..+++++|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.++ .+|..+.++++|++|
T Consensus        79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL  155 (328)
T ss_dssp             TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred             cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence            3578999999999998 78888888999999999999999 88988999999999999999998 789899999999999


Q ss_pred             eCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccc
Q 048551          170 DSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFT  249 (409)
Q Consensus       170 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~  249 (409)
                      ++++|++.+.+|..+..      ..     +   ...+.++++|++|++++|.++ .+|..+. .+++|++|++++|.++
T Consensus       156 ~L~~n~~~~~~p~~~~~------~~-----~---~~~~~~l~~L~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~N~l~  219 (328)
T 4fcg_A          156 SIRACPELTELPEPLAS------TD-----A---SGEHQGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPLS  219 (328)
T ss_dssp             EEEEETTCCCCCSCSEE------EC---------CCCEEESTTCCEEEEEEECCC-CCCGGGG-GCTTCCEEEEESSCCC
T ss_pred             ECCCCCCccccChhHhh------cc-----c---hhhhccCCCCCEEECcCCCcC-cchHhhc-CCCCCCEEEccCCCCC
Confidence            99998888788765543      11     1   114667899999999999999 8999887 8999999999999999


Q ss_pred             cccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCCCE
Q 048551          250 GPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEE  329 (409)
Q Consensus       250 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~  329 (409)
                      + +|..+..+++|++|++++|++.+                              .+|..+.           ++++|++
T Consensus       220 ~-l~~~l~~l~~L~~L~Ls~n~~~~------------------------------~~p~~~~-----------~l~~L~~  257 (328)
T 4fcg_A          220 A-LGPAIHHLPKLEELDLRGCTALR------------------------------NYPPIFG-----------GRAPLKR  257 (328)
T ss_dssp             C-CCGGGGGCTTCCEEECTTCTTCC------------------------------BCCCCTT-----------CCCCCCE
T ss_pred             c-CchhhccCCCCCEEECcCCcchh------------------------------hhHHHhc-----------CCCCCCE
Confidence            4 67789999999999999998874                              5665544           4577899


Q ss_pred             EECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-CCCCCCCeecccCC
Q 048551          330 LDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-GVFNNKTRISLAGN  381 (409)
Q Consensus       330 L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~~~~~L~~L~l~~N  381 (409)
                      |++++|++.+.+|..+..+++|++|++ +|++.+.+|.. ..+++|+.+++..|
T Consensus       258 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             EECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             EECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence            999999999999999999999999999 99999999987 88999999999877

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=5.8e-29  Score=230.08  Aligned_cols=265  Identities=20%  Similarity=0.252  Sum_probs=208.1

Q ss_pred             CcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeec
Q 048551           70 LRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCV  149 (409)
Q Consensus        70 l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~  149 (409)
                      .+++++++++++ .+|..+  .++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus        13 ~~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           13 KVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             SCEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CeEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            367888999998 677554  47899999999999977778899999999999999999977788899999999999999


Q ss_pred             cc-ccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccC
Q 048551          150 IK-LTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNL  227 (409)
Q Consensus       150 n~-l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~  227 (409)
                      |. ++...|..+..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+ .+..+++|+.|++++|.++ .+
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~  168 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SV  168 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EE
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-cc
Confidence            97 776668889999999999999999998888889999999999999999998776 6888999999999999998 55


Q ss_pred             chH-HhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccC
Q 048551          228 PPV-IGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYL  306 (409)
Q Consensus       228 p~~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~i  306 (409)
                      +.. +. .+++|++|++++|.+++..|..+..+++|+.|++++|++++                               +
T Consensus       169 ~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------------------~  216 (285)
T 1ozn_A          169 PERAFR-GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-------------------------------L  216 (285)
T ss_dssp             CTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-------------------------------C
T ss_pred             CHHHhc-CccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc-------------------------------C
Confidence            554 54 78999999999999998888888899999999999998874                               3


Q ss_pred             ChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC---CCCCCCCeecccCC
Q 048551          307 PTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK---GVFNNKTRISLAGN  381 (409)
Q Consensus       307 p~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~---~~~~~L~~L~l~~N  381 (409)
                      +...          +..+++|++|++++|.+....+.. .-...++.+.. .+.+....|..   ..+..++..++.||
T Consensus       217 ~~~~----------~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C  284 (285)
T 1ozn_A          217 PTEA----------LAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC  284 (285)
T ss_dssp             CHHH----------HTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred             CHHH----------cccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence            3221          234567788889988887544321 11123444456 66676666653   22334444444443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=9.6e-29  Score=228.61  Aligned_cols=235  Identities=19%  Similarity=0.165  Sum_probs=202.8

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCc-CCccCCcccCCCCCCcEEEe
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNI-LAGEIPAEIGNLFKLEKLSF  147 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~L  147 (409)
                      ++++|++++|++++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|. ++...|..+..+++|++|++
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l  112 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence            79999999999997777889999999999999999998889999999999999999997 87666888999999999999


Q ss_pred             ecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCccc
Q 048551          148 CVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGN  226 (409)
Q Consensus       148 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~  226 (409)
                      ++|.+++..|..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+ .+..+++|+.|++++|.+++.
T Consensus       113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  192 (285)
T 1ozn_A          113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV  192 (285)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence            9999998778889999999999999999997777779999999999999999998877 688999999999999999977


Q ss_pred             CchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccC
Q 048551          227 LPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYL  306 (409)
Q Consensus       227 ~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~i  306 (409)
                      .|..+. .+++|++|++++|.+++..+..+..+++|+.|++++|++............+ +.+....+.+.      ...
T Consensus       193 ~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l-~~~~~~~~~~~------c~~  264 (285)
T 1ozn_A          193 HPHAFR-DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWL-QKFRGSSSEVP------CSL  264 (285)
T ss_dssp             CTTTTT-TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHH-HHCCSEECCCB------EEE
T ss_pred             CHhHcc-CcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHH-HhcccccCccc------cCC
Confidence            777776 8999999999999999877778999999999999999998654111111111 44555666666      456


Q ss_pred             Chhcc
Q 048551          307 PTGIS  311 (409)
Q Consensus       307 p~~~~  311 (409)
                      |..+.
T Consensus       265 p~~l~  269 (285)
T 1ozn_A          265 PQRLA  269 (285)
T ss_dssp             SGGGT
T ss_pred             chHhC
Confidence            66543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=1.5e-28  Score=241.35  Aligned_cols=248  Identities=18%  Similarity=0.157  Sum_probs=207.4

Q ss_pred             CCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCC
Q 048551           93 RLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSN  172 (409)
Q Consensus        93 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  172 (409)
                      ..+.++.++..++ .+|..+.  +++++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            3567888899998 6787664  789999999999998778889999999999999999998777899999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccc
Q 048551          173 RNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGP  251 (409)
Q Consensus       173 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~  251 (409)
                      +|++++..+..|..+++|++|++++|.++...+ .+.++++|+.|++++|...+.++...+..+++|++|++++|.++ .
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~  199 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E  199 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence            999997777789999999999999999998887 88899999999999965555777755558999999999999998 4


Q ss_pred             cchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEE
Q 048551          252 LPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELD  331 (409)
Q Consensus       252 ~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~  331 (409)
                      +| .+..+++|++|++++|++++.                              .|..           |.++++|+.|+
T Consensus       200 ~~-~~~~l~~L~~L~Ls~N~l~~~------------------------------~~~~-----------~~~l~~L~~L~  237 (440)
T 3zyj_A          200 IP-NLTPLIKLDELDLSGNHLSAI------------------------------RPGS-----------FQGLMHLQKLW  237 (440)
T ss_dssp             CC-CCTTCSSCCEEECTTSCCCEE------------------------------CTTT-----------TTTCTTCCEEE
T ss_pred             cc-ccCCCcccCEEECCCCccCcc------------------------------Chhh-----------hccCccCCEEE
Confidence            55 478899999999999998753                              2222           33456778888


Q ss_pred             CcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-CCCCCCCeecccCCCCcee
Q 048551          332 LSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-GVFNNKTRISLAGNGKLCG  386 (409)
Q Consensus       332 Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~~~~~L~~L~l~~Np~l~g  386 (409)
                      +++|+|++..+..|..+++|++|+| +|++++..+.. ..+++|+.|++++||+.|.
T Consensus       238 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  294 (440)
T 3zyj_A          238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN  294 (440)
T ss_dssp             CTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred             CCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence            8888888777788888888888888 77777555443 6678888888888887763

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=2.2e-29  Score=240.10  Aligned_cols=257  Identities=14%  Similarity=0.131  Sum_probs=213.7

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC  148 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  148 (409)
                      ++++|++++|++++..+..+.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..++.+++|++|+++
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  132 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL  132 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence            89999999999996666689999999999999999998888889999999999999999995444458999999999999


Q ss_pred             cccccccCCc--cccCCCCCcEEeCCCC-CCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCc
Q 048551          149 VIKLTGQLPA--SIQNLSSHLEADSNRN-NFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLN  224 (409)
Q Consensus       149 ~n~l~~~~p~--~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~  224 (409)
                      +|.++ .+|.  .+.++++|++|++++| .+.+..+..+.++++|++|++++|.+++..+ .+.++++|++|++++|.++
T Consensus       133 ~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  211 (353)
T 2z80_A          133 GNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI  211 (353)
T ss_dssp             TCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred             CCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence            99999 4554  7899999999999999 4776667889999999999999999999877 8999999999999999997


Q ss_pred             ccCchHHhhCCCccceeeccccccccccchhh---hcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCcccccc
Q 048551          225 GNLPPVIGAKLPNLRKIVIALNNFTGPLPDSF---SNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQ  301 (409)
Q Consensus       225 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~  301 (409)
                       .+|..+...+++|++|++++|.+++..+..+   .....++.++++++.+++..+                        
T Consensus       212 -~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l------------------------  266 (353)
T 2z80_A          212 -LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL------------------------  266 (353)
T ss_dssp             -THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHH------------------------
T ss_pred             -cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcch------------------------
Confidence             7777766578999999999999997655443   345678888888887765321                        


Q ss_pred             ccccCChhccCCCCCCccccCCCCCCCEEECcCCccccccchh-hhcCCCCcEEEe-eccceecCC
Q 048551          302 NICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRL-LVNLSFLVLLNL-YNHFDGEVP  365 (409)
Q Consensus       302 ~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L-~n~l~~~~p  365 (409)
                        ..+|..+.           .+++|++|++++|+++ .+|.. +..+++|++|++ +|.+.+..|
T Consensus       267 --~~l~~~l~-----------~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          267 --FQVMKLLN-----------QISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             --HHHHHHHH-----------TCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             --hhhHHHHh-----------cccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence              13444443           3467789999999998 45554 588899999999 888877655

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=2.8e-28  Score=240.28  Aligned_cols=248  Identities=18%  Similarity=0.140  Sum_probs=205.8

Q ss_pred             CCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCC
Q 048551           93 RLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSN  172 (409)
Q Consensus        93 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  172 (409)
                      ..+.++.++..++ .+|..+.  +++++|++++|.+++..|..|.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            3567888888888 6776554  689999999999998888899999999999999999998888899999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccc
Q 048551          173 RNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGP  251 (409)
Q Consensus       173 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~  251 (409)
                      +|.+++..+..|.++++|++|++++|.++...+ .+.++++|+.|++++|...+.++...+..+++|++|++++|.+++ 
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-  210 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-  210 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-
Confidence            999997777779999999999999999998877 888999999999999655557777655589999999999999985 


Q ss_pred             cchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEE
Q 048551          252 LPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELD  331 (409)
Q Consensus       252 ~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~  331 (409)
                      +| .+..+++|++|++++|++++.                              .|..+           .++++|+.|+
T Consensus       211 ~~-~~~~l~~L~~L~Ls~N~l~~~------------------------------~~~~~-----------~~l~~L~~L~  248 (452)
T 3zyi_A          211 MP-NLTPLVGLEELEMSGNHFPEI------------------------------RPGSF-----------HGLSSLKKLW  248 (452)
T ss_dssp             CC-CCTTCTTCCEEECTTSCCSEE------------------------------CGGGG-----------TTCTTCCEEE
T ss_pred             cc-cccccccccEEECcCCcCccc------------------------------Ccccc-----------cCccCCCEEE
Confidence            44 478899999999999998753                              23232           3446778888


Q ss_pred             CcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-CCCCCCCeecccCCCCcee
Q 048551          332 LSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-GVFNNKTRISLAGNGKLCG  386 (409)
Q Consensus       332 Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~~~~~L~~L~l~~Np~l~g  386 (409)
                      +++|++++..+..+..+++|++|+| +|++.+..+.. ..+++|+.|++++||+-|.
T Consensus       249 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  305 (452)
T 3zyi_A          249 VMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD  305 (452)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred             eCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence            8888888777778888888888888 77776554443 5678888888888887663

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.96  E-value=9.1e-28  Score=236.31  Aligned_cols=287  Identities=23%  Similarity=0.260  Sum_probs=155.4

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC  148 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  148 (409)
                      ++++|++++|.+++ +|..   +++|++|++++|.+++ ++..   .++|++|++++|.+++ +| .++.+++|++|+++
T Consensus        92 ~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~  161 (454)
T 1jl5_A           92 HLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVD  161 (454)
T ss_dssp             TCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred             CCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECC
Confidence            67777777777774 5543   3567777777776663 2221   1567777777777764 55 46777777777777


Q ss_pred             cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCc
Q 048551          149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLP  228 (409)
Q Consensus       149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p  228 (409)
                      +|++++ +|..+   .+|++|++++|.+++ +| .++++++|++|++++|.+++.+..   .++|+.|++++|.++ .+|
T Consensus       162 ~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~l~-~lp  231 (454)
T 1jl5_A          162 NNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILE-ELP  231 (454)
T ss_dssp             SSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCS-SCC
T ss_pred             CCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCcCC-ccc
Confidence            777763 45432   366777777777664 44 466677777777777766654321   136666666666666 555


Q ss_pred             hHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccc--cc-ccccc
Q 048551          229 PVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHG--RQ-QNICY  305 (409)
Q Consensus       229 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~--~~-~~l~~  305 (409)
                      . +. .+++|++|++++|++++ +|..   +++|+.|++++|++++.+..   ..++ +.|++++|.+++  .. +.+..
T Consensus       232 ~-~~-~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~l~~~---~~~L-~~L~ls~N~l~~l~~~~~~L~~  301 (454)
T 1jl5_A          232 E-LQ-NLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTDLPEL---PQSL-TFLDVSENIFSGLSELPPNLYY  301 (454)
T ss_dssp             C-CT-TCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSCCCCC---CTTC-CEEECCSSCCSEESCCCTTCCE
T ss_pred             c-cC-CCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccccCcc---cCcC-CEEECcCCccCcccCcCCcCCE
Confidence            3 44 56666666666666663 3322   25566666666666553311   1122 555555555542  00 00000


Q ss_pred             CC------hhccCC-CCCCccccC---------CCCCCCEEECcCCccccccchhhhcCCCCcEEEe-ecccee--cCCC
Q 048551          306 LP------TGISNL-VNLDSLATD---------SLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDG--EVPT  366 (409)
Q Consensus       306 ip------~~~~~l-~~L~~L~~~---------~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~--~~p~  366 (409)
                      +.      ..+..+ ++|+.|+++         .+++|++|++++|+++ .+|.   .+++|++|++ +|++.+  .+|.
T Consensus       302 L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~  377 (454)
T 1jl5_A          302 LNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPE  377 (454)
T ss_dssp             EECCSSCCSEECCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCT
T ss_pred             EECcCCcCCcccCCcCcCCEEECCCCccccccccCCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChH
Confidence            00      001112 355555522         2467888888888887 4555   4678888888 788877  5665


Q ss_pred             C-CCC-------------CCCCeecccCCCCcee--cCCC
Q 048551          367 K-GVF-------------NNKTRISLAGNGKLCG--GFDG  390 (409)
Q Consensus       367 ~-~~~-------------~~L~~L~l~~Np~l~g--~~p~  390 (409)
                      . ..+             ++|+.|++++| .+.|  .+|.
T Consensus       378 ~l~~L~~n~~~~~i~~~~~~L~~L~ls~N-~l~~~~~iP~  416 (454)
T 1jl5_A          378 SVEDLRMNSHLAEVPELPQNLKQLHVETN-PLREFPDIPE  416 (454)
T ss_dssp             TCCEEECCC-------------------------------
T ss_pred             HHHhhhhcccccccccccCcCCEEECCCC-cCCccccchh
Confidence            4 444             67888888888 4655  6664

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.96  E-value=1.3e-30  Score=244.39  Aligned_cols=217  Identities=14%  Similarity=0.133  Sum_probs=152.7

Q ss_pred             CCCCCCCCCCceee--ec--CCCcEEEecCCCCccccCccccCCCCCCEEEccCCccc-ccCCcccc-------CCCCCc
Q 048551           52 SLTNSVNLCEWTGV--TC--ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFS-GTIPTNLS-------LRSKLM  119 (409)
Q Consensus        52 ~w~~~~~~c~~~g~--~c--~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~~~-------~l~~L~  119 (409)
                      .|.....|+.+..+  .|  .+++++++++|.+  .+|..+...  |++|++++|.++ ..+|..+.       ++++|+
T Consensus        23 ~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~   98 (312)
T 1wwl_A           23 DWSSAFNCLGAADVELYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ   98 (312)
T ss_dssp             CGGGGGGSSSCSEEEEEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCC
T ss_pred             chHHHhhhhccccEEEEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCcc
Confidence            45444444444332  22  2678888888888  677666544  888888888884 44565554       688888


Q ss_pred             EEEcCCCcCCccCCccc--CCCCCCcEEEeecccccccCCccccCC-----CCCcEEeCCCCCCCCCCCCCCCCCCCCcE
Q 048551          120 LFFANRNILAGEIPAEI--GNLFKLEKLSFCVIKLTGQLPASIQNL-----SSHLEADSNRNNFGGKIPESPGQLRSLFY  192 (409)
Q Consensus       120 ~L~l~~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  192 (409)
                      +|++++|.+++.+|..+  +.+++|++|++++|.+++. |..+..+     ++|++|++++|++.+..|..++++++|++
T Consensus        99 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  177 (312)
T 1wwl_A           99 ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALST  177 (312)
T ss_dssp             EEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCE
T ss_pred             EEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCE
Confidence            88888888888788775  7888888888888888865 7777766     78888888888888777778888888888


Q ss_pred             EEccCCcCccc---Ccc--cCCCCCCcEEEeecCcCcc--cCchHHhhCCCccceeeccccccccccc-hhhhcCCCCCE
Q 048551          193 LNVGGNQFSGM---FLP--VYNLSSLEMIYLHDNRLNG--NLPPVIGAKLPNLRKIVIALNNFTGPLP-DSFSNASNRER  264 (409)
Q Consensus       193 L~l~~n~l~~~---~~~--~~~l~~L~~L~l~~n~l~~--~~p~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~  264 (409)
                      |++++|.+.+.   ++.  +..+++|++|++++|.+++  .++..++..+++|++|++++|.+++..| ..+..+++|++
T Consensus       178 L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~  257 (312)
T 1wwl_A          178 LDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS  257 (312)
T ss_dssp             EECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCE
T ss_pred             EECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCE
Confidence            88888887654   222  3677778888888877762  2333443466777777777777776553 34455667777


Q ss_pred             EEcccCcCc
Q 048551          265 LELSYNQFR  273 (409)
Q Consensus       265 L~Ls~N~l~  273 (409)
                      |++++|+++
T Consensus       258 L~Ls~N~l~  266 (312)
T 1wwl_A          258 LNLSFTGLK  266 (312)
T ss_dssp             EECTTSCCS
T ss_pred             EECCCCccC
Confidence            777777665

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.96  E-value=1.1e-27  Score=219.74  Aligned_cols=215  Identities=23%  Similarity=0.278  Sum_probs=190.2

Q ss_pred             CCCCCceeeecC---CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCC
Q 048551           57 VNLCEWTGVTCA---SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIP  133 (409)
Q Consensus        57 ~~~c~~~g~~c~---~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  133 (409)
                      .+.|.|.|+.|.   +.+.+++++++++ .+|..+.  +++++|++++|.+++..+..|..+++|++|++++|.++...+
T Consensus         2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~   78 (270)
T 2o6q_A            2 EALCKKDGGVCSCNNNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA   78 (270)
T ss_dssp             CCCBGGGTCSBEEETTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT
T ss_pred             CccCCCCCCCCEeCCCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh
Confidence            478999999886   6889999999999 6787665  689999999999997777789999999999999999995555


Q ss_pred             cccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCC
Q 048551          134 AEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSS  212 (409)
Q Consensus       134 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~  212 (409)
                      ..|..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..|..+++|++|++++|.+++.++ .+..+++
T Consensus        79 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  158 (270)
T 2o6q_A           79 GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS  158 (270)
T ss_dssp             TTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             hhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcc
Confidence            567899999999999999997666778999999999999999998888889999999999999999998877 6889999


Q ss_pred             CcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccc
Q 048551          213 LEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGK  275 (409)
Q Consensus       213 L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  275 (409)
                      |+.|++++|.++ .++...+..+++|++|++++|++++..+..+..+++|+.|++++|++...
T Consensus       159 L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          159 LKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             CCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             cceeEecCCcCc-EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence            999999999999 55554334899999999999999977667789999999999999998653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.96  E-value=1.7e-28  Score=241.59  Aligned_cols=185  Identities=23%  Similarity=0.222  Sum_probs=86.5

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCC-------------cEEEcCCCcCCccCCcc
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKL-------------MLFFANRNILAGEIPAE  135 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------------~~L~l~~n~l~~~~p~~  135 (409)
                      ++++|++++|++ |.+|..++++++|++|++++|.+++.+|..++.+++|             ++|++++|.+++ +|..
T Consensus        12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~   89 (454)
T 1jl5_A           12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL   89 (454)
T ss_dssp             -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC
T ss_pred             cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC
Confidence            677777777777 5777777777777777777777777777777666543             666776666663 3432


Q ss_pred             cCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcE
Q 048551          136 IGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEM  215 (409)
Q Consensus       136 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~  215 (409)
                         .++|++|++++|.+++ +|..   .++|++|++++|.+++ ++..   .++|++|++++|.+++.+ .+.++++|++
T Consensus        90 ---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~  157 (454)
T 1jl5_A           90 ---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKI  157 (454)
T ss_dssp             ---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCE
T ss_pred             ---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCE
Confidence               2456666666666663 4432   2455555555555542 2211   134555555555555422 3455555555


Q ss_pred             EEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCcc
Q 048551          216 IYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRG  274 (409)
Q Consensus       216 L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  274 (409)
                      |++++|.++ .+|..    .++|++|++++|.+++ +| .+.++++|++|++++|++++
T Consensus       158 L~l~~N~l~-~lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~  209 (454)
T 1jl5_A          158 IDVDNNSLK-KLPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK  209 (454)
T ss_dssp             EECCSSCCS-CCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS
T ss_pred             EECCCCcCc-ccCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc
Confidence            555555554 23322    2345555555555543 33 34555555555555555544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.96  E-value=2.3e-28  Score=248.23  Aligned_cols=272  Identities=23%  Similarity=0.282  Sum_probs=208.5

Q ss_pred             CCCCCCCCCCCCceeeec--------C--CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCc
Q 048551           50 TSSLTNSVNLCEWTGVTC--------A--SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLM  119 (409)
Q Consensus        50 ~~~w~~~~~~c~~~g~~c--------~--~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  119 (409)
                      +..|....++|.|.+..|        .  +++.|++++|+++ .+|..+.  ++|++|++++|.++ .+|.   .+++|+
T Consensus        12 w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~   84 (622)
T 3g06_A           12 WSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELR   84 (622)
T ss_dssp             HHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCC
T ss_pred             HHHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCC
Confidence            345766678889866432        1  7999999999999 8887776  89999999999999 5665   579999


Q ss_pred             EEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCc
Q 048551          120 LFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQ  199 (409)
Q Consensus       120 ~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  199 (409)
                      +|++++|.++ .+|.   .+++|++|++++|.++ .+|.   .+++|++|++++|++++ +|..   +++|++|++++|.
T Consensus        85 ~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~  152 (622)
T 3g06_A           85 TLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQ  152 (622)
T ss_dssp             EEEECSCCCS-CCCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSC
T ss_pred             EEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCc
Confidence            9999999998 5775   6799999999999998 4565   56889999999999984 5553   4899999999999


Q ss_pred             CcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchh
Q 048551          200 FSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWR  279 (409)
Q Consensus       200 l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~  279 (409)
                      +++.+.   ...+|+.|++++|.++ .+|   . .+++|+.|++++|.+++ +|.   .+++|+.|++++|.++..+.. 
T Consensus       153 l~~l~~---~~~~L~~L~L~~N~l~-~l~---~-~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~~~-  219 (622)
T 3g06_A          153 LASLPA---LPSELCKLWAYNNQLT-SLP---M-LPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLPAL-  219 (622)
T ss_dssp             CSCCCC---CCTTCCEEECCSSCCS-CCC---C-CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCC-
T ss_pred             CCCcCC---ccCCCCEEECCCCCCC-CCc---c-cCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccCCC-
Confidence            987643   3468999999999998 677   2 57899999999999984 454   247899999999999875521 


Q ss_pred             hhhcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-ec
Q 048551          280 SAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YN  358 (409)
Q Consensus       280 ~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n  358 (409)
                        .+++ +.|++++|.++       .+|.   .           +++|+.|++++|+|+ .+|.   .+++|++|++ +|
T Consensus       220 --~~~L-~~L~Ls~N~L~-------~lp~---~-----------l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N  271 (622)
T 3g06_A          220 --PSGL-KELIVSGNRLT-------SLPV---L-----------PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRN  271 (622)
T ss_dssp             --CTTC-CEEECCSSCCS-------CCCC---C-----------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSS
T ss_pred             --CCCC-CEEEccCCccC-------cCCC---C-----------CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCC
Confidence              2334 89999999887       4652   1           255677777777776 3444   4566777777 55


Q ss_pred             cceecCCCC-CCCCCCCeecccCCC
Q 048551          359 HFDGEVPTK-GVFNNKTRISLAGNG  382 (409)
Q Consensus       359 ~l~~~~p~~-~~~~~L~~L~l~~Np  382 (409)
                      ++. .+|.. ..+++|+.|++++||
T Consensus       272 ~L~-~lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          272 QLT-RLPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             CCC-SCCGGGGGSCTTCEEECCSCC
T ss_pred             CCC-cCCHHHhhccccCEEEecCCC
Confidence            555 45544 566777777777774

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=2.9e-28  Score=227.64  Aligned_cols=247  Identities=21%  Similarity=0.194  Sum_probs=207.6

Q ss_pred             CCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeeccccccc--CCccccCCCCCcEEeC
Q 048551           94 LEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQ--LPASIQNLSSHLEADS  171 (409)
Q Consensus        94 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~l  171 (409)
                      -+.++.+++.++ .+|..+.  ++|++|++++|.++...+..|+.+++|++|++++|.++..  .+..+..+++|++|++
T Consensus         9 ~~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A            9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CCEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            357899999998 6776553  7899999999999944344579999999999999999833  3667788999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc--ccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccc
Q 048551          172 NRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL--PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFT  249 (409)
Q Consensus       172 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~  249 (409)
                      ++|.+. .+|..+..+++|++|++++|.+++..+  .+..+++|+.|++++|.+++..+..+. .+++|++|++++|.++
T Consensus        86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~  163 (306)
T 2z66_A           86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQ  163 (306)
T ss_dssp             CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT-TCTTCCEEECTTCEEG
T ss_pred             CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc-cCcCCCEEECCCCccc
Confidence            999998 566678899999999999999988765  688899999999999999866666665 8899999999999998


Q ss_pred             c-ccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCCC
Q 048551          250 G-PLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIE  328 (409)
Q Consensus       250 ~-~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~  328 (409)
                      + ..|..+..+++|++|++++|++++.                              .|..+           ..+++|+
T Consensus       164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~------------------------------~~~~~-----------~~l~~L~  202 (306)
T 2z66_A          164 ENFLPDIFTELRNLTFLDLSQCQLEQL------------------------------SPTAF-----------NSLSSLQ  202 (306)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEE------------------------------CTTTT-----------TTCTTCC
T ss_pred             cccchhHHhhCcCCCEEECCCCCcCCc------------------------------CHHHh-----------cCCCCCC
Confidence            6 5788899999999999999998742                              23333           3457889


Q ss_pred             EEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-CCC-CCCCeecccCCCCcee
Q 048551          329 ELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-GVF-NNKTRISLAGNGKLCG  386 (409)
Q Consensus       329 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~~~-~~L~~L~l~~Np~l~g  386 (409)
                      +|++++|++++..+..+..+++|++|++ +|++.+..|.. ..+ ++|+.|++++||.-|+
T Consensus       203 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             EEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             EEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            9999999999877778999999999999 99999888875 566 4999999999976653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.96  E-value=3.2e-30  Score=242.29  Aligned_cols=266  Identities=14%  Similarity=0.101  Sum_probs=181.5

Q ss_pred             CcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeec
Q 048551           70 LRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCV  149 (409)
Q Consensus        70 l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~  149 (409)
                      ++..+++.+.+...+...+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+  +..+++|++|++++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence            4555666676664444555667788888888888887666778888888888888888875444  78888888888888


Q ss_pred             ccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccCc
Q 048551          150 IKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLP  228 (409)
Q Consensus       150 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~p  228 (409)
                      |.+++ ++    ..++|++|++++|.+++..+..   +++|++|++++|.+++..+ .+..+++|+.|++++|.+++..+
T Consensus        90 n~l~~-l~----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  161 (317)
T 3o53_A           90 NYVQE-LL----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF  161 (317)
T ss_dssp             SEEEE-EE----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred             Ccccc-cc----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence            88873 22    3478888888888887655443   5678888888888888766 77778888888888888886555


Q ss_pred             hHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccCCh
Q 048551          229 PVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPT  308 (409)
Q Consensus       229 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~  308 (409)
                      ..+...+++|++|++++|.+++. +. ...+++|++|++++|++++.+.....++++ +.|++++|.++       .+|.
T Consensus       162 ~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L-~~L~L~~N~l~-------~l~~  231 (317)
T 3o53_A          162 AELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGV-TWISLRNNKLV-------LIEK  231 (317)
T ss_dssp             GGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTC-SEEECTTSCCC-------EECT
T ss_pred             HHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchhhhcccCcc-cEEECcCCccc-------chhh
Confidence            55544678888888888888754 32 334788888888888887654221113333 55555555554       3444


Q ss_pred             hccCCCCCCccccCCCCCCCEEECcCCccc-cccchhhhcCCCCcEEEe-e-ccceecCCC
Q 048551          309 GISNLVNLDSLATDSLKSIEELDLSSNNLS-GQLPRLLVNLSFLVLLNL-Y-NHFDGEVPT  366 (409)
Q Consensus       309 ~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L-~-n~l~~~~p~  366 (409)
                      .+.           .+++|+.|++++|+++ +.+|..+..++.|+.+++ + +.+.+..|.
T Consensus       232 ~~~-----------~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          232 ALR-----------FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             TCC-----------CCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             Hhh-----------cCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            332           2355566666666666 555666666666666666 2 334444443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=7.8e-30  Score=239.11  Aligned_cols=247  Identities=20%  Similarity=0.230  Sum_probs=186.4

Q ss_pred             cccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCC-ccCCcccC-------CCCCCcEEEeecccccccCCc
Q 048551           87 ELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILA-GEIPAEIG-------NLFKLEKLSFCVIKLTGQLPA  158 (409)
Q Consensus        87 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~p~~~~-------~l~~L~~L~L~~n~l~~~~p~  158 (409)
                      .++..++|++|++++|.+  .+|..+...  |++|++++|.++ +.+|..+.       ++++|++|++++|.+++.+|.
T Consensus        38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  113 (312)
T 1wwl_A           38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP  113 (312)
T ss_dssp             EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred             EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence            345567788899999988  677766544  888899988884 45666555       688899999999999888888


Q ss_pred             cc--cCCCCCcEEeCCCCCCCCCCCCCCCCC-----CCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCccc--Cc
Q 048551          159 SI--QNLSSHLEADSNRNNFGGKIPESPGQL-----RSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGN--LP  228 (409)
Q Consensus       159 ~l--~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~--~p  228 (409)
                      .+  ..+++|++|++++|.+++. |..+..+     ++|++|++++|.+.+..+ .+.++++|++|++++|++.+.  ++
T Consensus       114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  192 (312)
T 1wwl_A          114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI  192 (312)
T ss_dssp             CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred             HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence            76  7888999999999988866 6666655     888889998888888776 788888888888888887754  23


Q ss_pred             hHH-hhCCCccceeecccccccc--ccc-hhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccc
Q 048551          229 PVI-GAKLPNLRKIVIALNNFTG--PLP-DSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNIC  304 (409)
Q Consensus       229 ~~~-~~~l~~L~~L~L~~n~l~~--~~p-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~  304 (409)
                      ..+ +..+++|++|++++|++++  .++ ..+..+++|++|++++|++++.                             
T Consensus       193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----------------------------  243 (312)
T 1wwl_A          193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA-----------------------------  243 (312)
T ss_dssp             HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS-----------------------------
T ss_pred             HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc-----------------------------
Confidence            333 1277888888888888873  122 3346778888888888888752                             


Q ss_pred             cCChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCCCCCCCCCeecccCCC
Q 048551          305 YLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTKGVFNNKTRISLAGNG  382 (409)
Q Consensus       305 ~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~~~~~~L~~L~l~~Np  382 (409)
                       .|...          +..+++|++|++++|+|+ .+|..+.  ++|++|++ +|++.+. |....+++|+.|++++||
T Consensus       244 -~~~~~----------~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          244 -AGAPS----------CDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNP  307 (312)
T ss_dssp             -CCCSC----------CCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCT
T ss_pred             -cchhh----------hhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCC
Confidence             22111          223477899999999998 6777665  78999999 7777765 656778889999999995

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=2e-28  Score=230.00  Aligned_cols=244  Identities=15%  Similarity=0.123  Sum_probs=196.8

Q ss_pred             CCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551           68 ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF  147 (409)
Q Consensus        68 ~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  147 (409)
                      .++++|++++|++++..|..+..+++|++|++++|.+++..+  +..+++|++|++++|.+++ ++    ..++|++|++
T Consensus        34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~----~~~~L~~L~l  106 (317)
T 3o53_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHA  106 (317)
T ss_dssp             GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EE----ECTTCCEEEC
T ss_pred             CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-cc----CCCCcCEEEC
Confidence            389999999999997777899999999999999999986654  8999999999999999984 33    3489999999


Q ss_pred             ecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-cc-CCCCCCcEEEeecCcCcc
Q 048551          148 CVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PV-YNLSSLEMIYLHDNRLNG  225 (409)
Q Consensus       148 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~-~~l~~L~~L~l~~n~l~~  225 (409)
                      ++|.+++..+.   .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+ .+ ..+++|++|++++|.++ 
T Consensus       107 ~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-  182 (317)
T 3o53_A          107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-  182 (317)
T ss_dssp             CSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-
T ss_pred             CCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc-
Confidence            99999865443   46789999999999998878889999999999999999998766 44 47899999999999998 


Q ss_pred             cCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCcccccccccc
Q 048551          226 NLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICY  305 (409)
Q Consensus       226 ~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~  305 (409)
                      .++...  .+++|++|++++|.+++ +|..+..+++|++|++++|++++.+.....++++ +.|++++|.+..     +.
T Consensus       183 ~~~~~~--~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L-~~L~l~~N~~~~-----~~  253 (317)
T 3o53_A          183 DVKGQV--VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNL-EHFDLRGNGFHC-----GT  253 (317)
T ss_dssp             EEECCC--CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTC-CEEECTTCCCBH-----HH
T ss_pred             cccccc--ccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccchhhHhhcCCCC-CEEEccCCCccC-----cC
Confidence            555443  48999999999999995 5556899999999999999999765321124555 999999999872     14


Q ss_pred             CChhccCCCCCCccccCCCCCCCEEECc-CCccccccc
Q 048551          306 LPTGISNLVNLDSLATDSLKSIEELDLS-SNNLSGQLP  342 (409)
Q Consensus       306 ip~~~~~l~~L~~L~~~~l~~L~~L~Ls-~N~l~~~~p  342 (409)
                      +|.++..+           +.|+.|+++ .+.++|..|
T Consensus       254 ~~~~~~~~-----------~~L~~l~l~~~~~l~~~~~  280 (317)
T 3o53_A          254 LRDFFSKN-----------QRVQTVAKQTVKKLTGQNE  280 (317)
T ss_dssp             HHHHHHTC-----------HHHHHHHHHHHHHHHSSSS
T ss_pred             HHHHHhcc-----------ccceEEECCCchhccCCch
Confidence            45555554           444566666 334454433

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.95  E-value=1.2e-29  Score=250.54  Aligned_cols=274  Identities=18%  Similarity=0.128  Sum_probs=119.3

Q ss_pred             CCEEEccCCcccc----cCCccccCCCCCcEEEcCCCcCCccCCccc-----CCCCCCcEEEeeccccccc----CCccc
Q 048551           94 LEKLILANNSFSG----TIPTNLSLRSKLMLFFANRNILAGEIPAEI-----GNLFKLEKLSFCVIKLTGQ----LPASI  160 (409)
Q Consensus        94 L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~-----~~l~~L~~L~L~~n~l~~~----~p~~l  160 (409)
                      |++|++++|.+++    .++..+..+++|++|++++|.+++..+..+     ...++|++|++++|.+++.    ++..+
T Consensus        87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  166 (461)
T 1z7x_W           87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL  166 (461)
T ss_dssp             CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred             eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH
Confidence            4444444444442    224444444444444444444442222111     1123444444444444432    12333


Q ss_pred             cCCCCCcEEeCCCCCCCCCCCCCCC-----CCCCCcEEEccCCcCcccC----c-ccCCCCCCcEEEeecCcCcccC---
Q 048551          161 QNLSSHLEADSNRNNFGGKIPESPG-----QLRSLFYLNVGGNQFSGMF----L-PVYNLSSLEMIYLHDNRLNGNL---  227 (409)
Q Consensus       161 ~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~----~-~~~~l~~L~~L~l~~n~l~~~~---  227 (409)
                      ..+++|++|++++|.+.+..+..+.     ..++|++|++++|.++...    + .+..+++|++|++++|.+++..   
T Consensus       167 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~  246 (461)
T 1z7x_W          167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAE  246 (461)
T ss_dssp             HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH
T ss_pred             hhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHH
Confidence            3444555555555544322111111     1234555555555544321    1 3334455555555555544221   


Q ss_pred             -chHHhhCCCccceeeccccccccc----cchhhhcCCCCCEEEcccCcCccccchhhh------hcccCcEEecccCCc
Q 048551          228 -PPVIGAKLPNLRKIVIALNNFTGP----LPDSFSNASNRERLELSYNQFRGKSIWRSA------ATSYSQRLNDDDQNH  296 (409)
Q Consensus       228 -p~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~------l~~l~~~L~l~~n~l  296 (409)
                       .+.+...+++|++|++++|.+++.    ++..+..+++|++|++++|++++.....+.      .+++ +.|++++|.+
T Consensus       247 l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L-~~L~L~~n~l  325 (461)
T 1z7x_W          247 LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL-ESLWVKSCSF  325 (461)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCC-CEEECTTSCC
T ss_pred             HHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccc-eeeEcCCCCC
Confidence             111211345555555555555432    344444455555555555555443321111      0133 5555555555


Q ss_pred             cccccccccCChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhc-----CCCCcEEEe-ecccee----cCCC
Q 048551          297 HGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVN-----LSFLVLLNL-YNHFDG----EVPT  366 (409)
Q Consensus       297 ~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~L-~n~l~~----~~p~  366 (409)
                      ++.  ....++..+..+           ++|++|++++|++++..+..+..     .++|++|++ +|++.+    .+|.
T Consensus       326 ~~~--~~~~l~~~l~~~-----------~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~  392 (461)
T 1z7x_W          326 TAA--CCSHFSSVLAQN-----------RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA  392 (461)
T ss_dssp             BGG--GHHHHHHHHHHC-----------SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             chH--HHHHHHHHHhhC-----------CCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence            410  000123333333           55566666666665444433332     445666666 555543    3343


Q ss_pred             C-CCCCCCCeecccCC
Q 048551          367 K-GVFNNKTRISLAGN  381 (409)
Q Consensus       367 ~-~~~~~L~~L~l~~N  381 (409)
                      . ..+++|++|++++|
T Consensus       393 ~l~~~~~L~~L~l~~N  408 (461)
T 1z7x_W          393 TLLANHSLRELDLSNN  408 (461)
T ss_dssp             HHHHCCCCCEEECCSS
T ss_pred             HHHhCCCccEEECCCC
Confidence            2 34556666666666

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.94  E-value=7.7e-29  Score=244.64  Aligned_cols=296  Identities=13%  Similarity=0.066  Sum_probs=229.0

Q ss_pred             CCcEEEecCCCCcc----ccCccccCCCCCCEEEccCCcccccCCcccc-----CCCCCcEEEcCCCcCCccC----Ccc
Q 048551           69 SLRFINIADNGVQG----EIPNELGNLVRLEKLILANNSFSGTIPTNLS-----LRSKLMLFFANRNILAGEI----PAE  135 (409)
Q Consensus        69 ~l~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~----p~~  135 (409)
                      ++++|++++|++++    .++..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++..    +..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            69999999999984    5688899999999999999999865444332     3568999999999998643    556


Q ss_pred             cCCCCCCcEEEeecccccccCCcccc-----CCCCCcEEeCCCCCCCCC----CCCCCCCCCCCcEEEccCCcCcccC--
Q 048551          136 IGNLFKLEKLSFCVIKLTGQLPASIQ-----NLSSHLEADSNRNNFGGK----IPESPGQLRSLFYLNVGGNQFSGMF--  204 (409)
Q Consensus       136 ~~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~--  204 (409)
                      +..+++|++|++++|.++...+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.+....  
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  245 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA  245 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence            67789999999999999865444443     366999999999999853    4566677899999999999987642  


Q ss_pred             ---c-ccCCCCCCcEEEeecCcCccc----CchHHhhCCCccceeeccccccccccchhhhc-----CCCCCEEEcccCc
Q 048551          205 ---L-PVYNLSSLEMIYLHDNRLNGN----LPPVIGAKLPNLRKIVIALNNFTGPLPDSFSN-----ASNRERLELSYNQ  271 (409)
Q Consensus       205 ---~-~~~~l~~L~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-----l~~L~~L~Ls~N~  271 (409)
                         + .+..+++|+.|++++|.+++.    ++..+. .+++|++|++++|.+++..+..+..     .++|++|++++|.
T Consensus       246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  324 (461)
T 1z7x_W          246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR-AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS  324 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh-hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence               2 233689999999999999853    566666 6899999999999998665554433     3699999999999


Q ss_pred             Cccccchhhh-----hcccCcEEecccCCccccccccccCChhccCCCCCCccccC-CCCCCCEEECcCCcccc----cc
Q 048551          272 FRGKSIWRSA-----ATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATD-SLKSIEELDLSSNNLSG----QL  341 (409)
Q Consensus       272 l~~~~~~~~~-----l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~-~l~~L~~L~Ls~N~l~~----~~  341 (409)
                      +++.....+.     .+++ +.|++++|.++      +..+..+...       +. ..++|++|++++|++++    .+
T Consensus       325 l~~~~~~~l~~~l~~~~~L-~~L~Ls~n~i~------~~~~~~l~~~-------l~~~~~~L~~L~L~~n~i~~~~~~~l  390 (461)
T 1z7x_W          325 FTAACCSHFSSVLAQNRFL-LELQISNNRLE------DAGVRELCQG-------LGQPGSVLRVLWLADCDVSDSSCSSL  390 (461)
T ss_dssp             CBGGGHHHHHHHHHHCSSC-CEEECCSSBCH------HHHHHHHHHH-------HTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred             CchHHHHHHHHHHhhCCCc-cEEEccCCccc------cccHHHHHHH-------HcCCCCceEEEECCCCCCChhhHHHH
Confidence            9886532222     3455 99999999887      2323322210       11 14688999999999996    78


Q ss_pred             chhhhcCCCCcEEEe-eccceec--------CCCCCCCCCCCeecccCC
Q 048551          342 PRLLVNLSFLVLLNL-YNHFDGE--------VPTKGVFNNKTRISLAGN  381 (409)
Q Consensus       342 p~~~~~l~~L~~L~L-~n~l~~~--------~p~~~~~~~L~~L~l~~N  381 (409)
                      |..+..+++|++|++ +|++.+.        +|.  ...+|+.|.+.++
T Consensus       391 ~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~--~~~~L~~L~~~~~  437 (461)
T 1z7x_W          391 AATLLANHSLRELDLSNNCLGDAGILQLVESVRQ--PGCLLEQLVLYDI  437 (461)
T ss_dssp             HHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTS--TTCCCCEEECTTC
T ss_pred             HHHHHhCCCccEEECCCCCCCHHHHHHHHHHhcc--CCcchhheeeccc
Confidence            889999999999999 8888754        333  3456777877776

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=7.2e-28  Score=239.23  Aligned_cols=173  Identities=16%  Similarity=0.056  Sum_probs=128.5

Q ss_pred             CCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEe
Q 048551           91 LVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEAD  170 (409)
Q Consensus        91 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  170 (409)
                      +++|++|+|++|.+++..|..|..+++|++|++++|.+++..|  ++.+++|++|++++|.+++. |    ..++|++|+
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~  105 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLH  105 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEEE
Confidence            3478888888888887777778888888888888888876554  77888888888888888732 2    237788888


Q ss_pred             CCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccc
Q 048551          171 SNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFT  249 (409)
Q Consensus       171 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~  249 (409)
                      +++|.+++..+.   .+++|++|++++|.+++..+ .+..+++|+.|++++|.+++..|..++..+++|+.|++++|.++
T Consensus       106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            888888765543   34678888888888887766 67777888888888888886666666546778888888888887


Q ss_pred             cccchhhhcCCCCCEEEcccCcCccc
Q 048551          250 GPLPDSFSNASNRERLELSYNQFRGK  275 (409)
Q Consensus       250 ~~~p~~l~~l~~L~~L~Ls~N~l~~~  275 (409)
                      +..+  ...+++|+.|++++|++++.
T Consensus       183 ~~~~--~~~l~~L~~L~Ls~N~l~~~  206 (487)
T 3oja_A          183 DVKG--QVVFAKLKTLDLSSNKLAFM  206 (487)
T ss_dssp             EEEC--CCCCTTCCEEECCSSCCCEE
T ss_pred             cccc--cccCCCCCEEECCCCCCCCC
Confidence            5522  33577788888888877653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.94  E-value=3.3e-26  Score=210.51  Aligned_cols=204  Identities=17%  Similarity=0.146  Sum_probs=103.8

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC  148 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  148 (409)
                      ++++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            45555555555554444455555555555555555554444455555555555555555554444445555555555555


Q ss_pred             cccccccCCccccCCCCCcEEeCCCCCCCCC-CCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCc----EEEeecCc
Q 048551          149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGK-IPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLE----MIYLHDNR  222 (409)
Q Consensus       149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~----~L~l~~n~  222 (409)
                      +|.+++..+..+..+++|++|++++|.+.+. +|..+.++++|++|++++|.+++..+ .+..+.+|+    .|++++|.
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~  188 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP  188 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence            5555543333455555555555555555432 34455555555555555555555443 333333333    45555555


Q ss_pred             CcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCcc
Q 048551          223 LNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRG  274 (409)
Q Consensus       223 l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  274 (409)
                      ++ .++...+ ...+|++|++++|++++..+..+..+++|+.|++++|++++
T Consensus       189 l~-~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          189 MN-FIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             CC-EECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             cc-ccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            55 3333333 23345555555555554433344555555555555555543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=6.9e-27  Score=232.16  Aligned_cols=236  Identities=17%  Similarity=0.117  Sum_probs=171.8

Q ss_pred             cCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcE
Q 048551          113 SLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFY  192 (409)
Q Consensus       113 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  192 (409)
                      ..+++|++|++++|.+++..|..|+.+++|++|++++|.+++..|  +..+++|++|++++|.+++..+     .++|++
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~  103 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIET  103 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCE
T ss_pred             ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCE
Confidence            345589999999999998777889999999999999999986555  8999999999999999985432     389999


Q ss_pred             EEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhh-cCCCCCEEEcccCc
Q 048551          193 LNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFS-NASNRERLELSYNQ  271 (409)
Q Consensus       193 L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~  271 (409)
                      |++++|.+++.++  ..+++|+.|++++|.+++..|..+. .+++|+.|++++|.+++..|..+. .+++|+.|++++|.
T Consensus       104 L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~  180 (487)
T 3oja_A          104 LHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF  180 (487)
T ss_dssp             EECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             EECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence            9999999998765  3468899999999999976676776 789999999999999988888876 79999999999999


Q ss_pred             CccccchhhhhcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCC
Q 048551          272 FRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFL  351 (409)
Q Consensus       272 l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  351 (409)
                      +++.+.... ++++ +.|++++|.++       .+|..+..           +++|+.|++++|++++ +|..+..+++|
T Consensus       181 l~~~~~~~~-l~~L-~~L~Ls~N~l~-------~~~~~~~~-----------l~~L~~L~Ls~N~l~~-lp~~l~~l~~L  239 (487)
T 3oja_A          181 IYDVKGQVV-FAKL-KTLDLSSNKLA-------FMGPEFQS-----------AAGVTWISLRNNKLVL-IEKALRFSQNL  239 (487)
T ss_dssp             CCEEECCCC-CTTC-CEEECCSSCCC-------EECGGGGG-----------GTTCSEEECTTSCCCE-ECTTCCCCTTC
T ss_pred             ccccccccc-CCCC-CEEECCCCCCC-------CCCHhHcC-----------CCCccEEEecCCcCcc-cchhhccCCCC
Confidence            987532111 2233 55566655555       33333322           2444555666665553 45555555556


Q ss_pred             cEEEe-eccce-ecCCCC-CCCCCCCeeccc
Q 048551          352 VLLNL-YNHFD-GEVPTK-GVFNNKTRISLA  379 (409)
Q Consensus       352 ~~L~L-~n~l~-~~~p~~-~~~~~L~~L~l~  379 (409)
                      +.|++ +|.+. +.+|.. ..++.++.+++.
T Consensus       240 ~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            66666 55554 333332 344455555554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.94  E-value=2.1e-25  Score=205.09  Aligned_cols=174  Identities=18%  Similarity=0.132  Sum_probs=120.8

Q ss_pred             EEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeeccc
Q 048551           72 FINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIK  151 (409)
Q Consensus        72 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~  151 (409)
                      .++..+.+++ .+|..+.  ++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus        11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence            4555666666 6776554  578999999999987666688888888888888888886666678888888888888888


Q ss_pred             ccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccC-c-ccCCCCCCcEEEeecCcCcccCch
Q 048551          152 LTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMF-L-PVYNLSSLEMIYLHDNRLNGNLPP  229 (409)
Q Consensus       152 l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~-~~~~l~~L~~L~l~~n~l~~~~p~  229 (409)
                      +++..+..+.++++|++|++++|.+.+..+..+.++++|++|++++|.+++.. + .+.++++|+.|++++|.+++..+.
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~  167 (276)
T 2z62_A           88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  167 (276)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence            88666677778888888888888877666556777777777777777776532 3 555566666666666666533333


Q ss_pred             HHhhCCCccc----eeeccccccc
Q 048551          230 VIGAKLPNLR----KIVIALNNFT  249 (409)
Q Consensus       230 ~~~~~l~~L~----~L~L~~n~l~  249 (409)
                      .+. .+++|+    +|++++|.++
T Consensus       168 ~~~-~l~~L~~l~l~L~ls~n~l~  190 (276)
T 2z62_A          168 DLR-VLHQMPLLNLSLDLSLNPMN  190 (276)
T ss_dssp             GGH-HHHTCTTCCEEEECCSSCCC
T ss_pred             Hhh-hhhhccccceeeecCCCccc
Confidence            332 333333    4444444444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.93  E-value=1.1e-24  Score=201.89  Aligned_cols=199  Identities=22%  Similarity=0.184  Sum_probs=178.7

Q ss_pred             CCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551           68 ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF  147 (409)
Q Consensus        68 ~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  147 (409)
                      .+++++++++++++ .+|..+.  +++++|++++|.+++..+..|..+++|++|++++|.+++ ++. .+.+++|++|++
T Consensus        10 ~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~L   84 (290)
T 1p9a_G           10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV-DGTLPVLGTLDL   84 (290)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC-CSCCTTCCEEEC
T ss_pred             CCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccC-CCCCCcCCEEEC
Confidence            38999999999999 7777665  789999999999998888899999999999999999995 443 378999999999


Q ss_pred             ecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCccc
Q 048551          148 CVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGN  226 (409)
Q Consensus       148 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~  226 (409)
                      ++|.++ .+|..+..+++|++|++++|++++..+..|.++++|++|++++|.+++.++ .+..+++|+.|++++|+++ .
T Consensus        85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~  162 (290)
T 1p9a_G           85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-E  162 (290)
T ss_dssp             CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-C
T ss_pred             CCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC-c
Confidence            999998 788889999999999999999997777889999999999999999998877 6788999999999999999 7


Q ss_pred             CchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCcc
Q 048551          227 LPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRG  274 (409)
Q Consensus       227 ~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  274 (409)
                      +|...+..+++|++|++++|+++ .+|..+....+|+.+++++|++..
T Consensus       163 l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            77766557999999999999999 678888888899999999999864

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=2.8e-24  Score=218.21  Aligned_cols=241  Identities=25%  Similarity=0.274  Sum_probs=202.9

Q ss_pred             CCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551           68 ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF  147 (409)
Q Consensus        68 ~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  147 (409)
                      .++++|++++|+++ .+|.   .+++|++|+|++|+++ .+|.   .+++|++|++++|.++ .+|.   .+++|++|++
T Consensus        61 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L  128 (622)
T 3g06_A           61 AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWI  128 (622)
T ss_dssp             TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEEC
T ss_pred             CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEEC
Confidence            48999999999999 6776   5789999999999998 5665   7899999999999999 4665   5789999999


Q ss_pred             ecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccC
Q 048551          148 CVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNL  227 (409)
Q Consensus       148 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~  227 (409)
                      ++|+++ .+|..   +++|++|++++|.+++ +|.   .+++|+.|++++|.+++++   ..+++|+.|++++|.++ .+
T Consensus       129 ~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~-~l  196 (622)
T 3g06_A          129 FGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLA-SL  196 (622)
T ss_dssp             CSSCCS-CCCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-CC
T ss_pred             CCCCCC-cCCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCC-CC
Confidence            999998 46654   4899999999999984 454   3478999999999999865   45789999999999998 56


Q ss_pred             chHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccCC
Q 048551          228 PPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLP  307 (409)
Q Consensus       228 p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip  307 (409)
                      |.    .+++|+.|++++|.++ .+|.   .+++|+.|++++|++++.+   ..++++ +.|++++|.++       .+|
T Consensus       197 ~~----~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L-~~L~Ls~N~L~-------~lp  257 (622)
T 3g06_A          197 PT----LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTSLP---VLPSEL-KELMVSGNRLT-------SLP  257 (622)
T ss_dssp             CC----CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSCCC---CCCTTC-CEEECCSSCCS-------CCC
T ss_pred             CC----ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCcCC---CCCCcC-cEEECCCCCCC-------cCC
Confidence            64    3578999999999998 4554   3578999999999999865   113344 99999999988       666


Q ss_pred             hhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCC
Q 048551          308 TGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPT  366 (409)
Q Consensus       308 ~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~  366 (409)
                      .              .+++|+.|++++|+|+ .+|..+.++++|+.|++ +|.+.+.+|.
T Consensus       258 ~--------------~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          258 M--------------LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             C--------------CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             c--------------ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            5              1377899999999999 78999999999999999 9999887765

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.93  E-value=1.6e-25  Score=205.60  Aligned_cols=178  Identities=19%  Similarity=0.217  Sum_probs=76.5

Q ss_pred             cCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcE
Q 048551           89 GNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLE  168 (409)
Q Consensus        89 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  168 (409)
                      ..+++|+.|++++|.++. + ..+..+++|++|++++|.+++ + +.++.+++|++|++++|.+++..+..+.++++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             ccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence            334455555555555442 1 124445555555555555442 1 23444445555555555444333333444444444


Q ss_pred             EeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccc
Q 048551          169 ADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNN  247 (409)
Q Consensus       169 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~  247 (409)
                      |++++|.+++..+..+..+++|++|++++|.+++.++ .+..+++|+.|++++|.++ .++...+..+++|++|++++|.
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~  192 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQ  192 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-ccCHHHhcCCccCCEEECCCCc
Confidence            4444444444333334444444444444444444333 2334444444444444444 2222111133444444444444


Q ss_pred             cccccchhhhcCCCCCEEEcccCc
Q 048551          248 FTGPLPDSFSNASNRERLELSYNQ  271 (409)
Q Consensus       248 l~~~~p~~l~~l~~L~~L~Ls~N~  271 (409)
                      +++..+..+..+++|+.|++++|+
T Consensus       193 l~~~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          193 LKSVPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCccCHHHHhCCcCCCEEEccCCC
Confidence            443333333344444444444433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.92  E-value=1.2e-24  Score=197.21  Aligned_cols=189  Identities=18%  Similarity=0.185  Sum_probs=141.2

Q ss_pred             CCCCceeeec-CCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCccc
Q 048551           58 NLCEWTGVTC-ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEI  136 (409)
Q Consensus        58 ~~c~~~g~~c-~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~  136 (409)
                      .|+.|.|.+| ...+++++++++++ .+|..+.  +++++|++++|.+++..+..|..+++|++|++++|.+++..+..+
T Consensus         3 ~Cp~~~gC~C~~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~   79 (251)
T 3m19_A            3 TCETVTGCTCNEGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF   79 (251)
T ss_dssp             -CHHHHSSEEEGGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred             cCCCCCceEcCCCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHh
Confidence            4778999999 57889999999999 7887665  689999999999998888888899999999999999987777778


Q ss_pred             CCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcE
Q 048551          137 GNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEM  215 (409)
Q Consensus       137 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~  215 (409)
                      ..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++.++ .+..+++|+.
T Consensus        80 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  159 (251)
T 3m19_A           80 DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQT  159 (251)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCE
Confidence            888888888888888886666667778888888888888776555556777777777777777776655 4556666666


Q ss_pred             EEeecCcCcccCchHHhhCCCccceeecccccccc
Q 048551          216 IYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTG  250 (409)
Q Consensus       216 L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~  250 (409)
                      |++++|.+++..+..+. .+++|+.|++++|.++.
T Consensus       160 L~L~~N~l~~~~~~~~~-~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          160 LSLSTNQLQSVPHGAFD-RLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             EECCSSCCSCCCTTTTT-TCTTCCEEECCSCCBCT
T ss_pred             EECCCCcCCccCHHHHh-CCCCCCEEEeeCCceeC
Confidence            66666666522222232 45555555555555543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.92  E-value=1e-24  Score=203.98  Aligned_cols=180  Identities=12%  Similarity=0.097  Sum_probs=111.5

Q ss_pred             CCCEEEccCCcccccCCc---cccCCCCCcEEEcCCCcCCccCCccc--CCCCCCcEEEeecccccccCC----ccccCC
Q 048551           93 RLEKLILANNSFSGTIPT---NLSLRSKLMLFFANRNILAGEIPAEI--GNLFKLEKLSFCVIKLTGQLP----ASIQNL  163 (409)
Q Consensus        93 ~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p----~~l~~l  163 (409)
                      .++.+.+.++.++...-.   .+..+++|++|++++|.+++..|..+  ..+++|++|++++|.+++..+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            467777777766532111   12234567788888887777777766  777778888888877775444    234467


Q ss_pred             CCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCccc---Cc--ccCCCCCCcEEEeecCcCcccCchH---HhhCC
Q 048551          164 SSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGM---FL--PVYNLSSLEMIYLHDNRLNGNLPPV---IGAKL  235 (409)
Q Consensus       164 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~--~~~~l~~L~~L~l~~n~l~~~~p~~---~~~~l  235 (409)
                      ++|++|++++|.+.+..+..++.+++|++|++++|.+.+.   ..  .+..+++|++|++++|.++ .++..   ++..+
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l  223 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAG  223 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHT
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcC
Confidence            7777777777777766667777777777777777776542   11  2345666666666666665 33321   22245


Q ss_pred             CccceeeccccccccccchhhhcC---CCCCEEEcccCcCc
Q 048551          236 PNLRKIVIALNNFTGPLPDSFSNA---SNRERLELSYNQFR  273 (409)
Q Consensus       236 ~~L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~Ls~N~l~  273 (409)
                      ++|++|++++|.+++..|..+..+   ++|++|++++|+++
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~  264 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE  264 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence            666666666666665555555444   45566666555554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=8e-24  Score=193.99  Aligned_cols=182  Identities=17%  Similarity=0.164  Sum_probs=163.1

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC  148 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  148 (409)
                      ++++|++++|++++..+..|..+++|++|++++|.++...+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  117 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD  117 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence            68999999999996666789999999999999999996666667899999999999999996666678999999999999


Q ss_pred             cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccC
Q 048551          149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNL  227 (409)
Q Consensus       149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~  227 (409)
                      +|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+ .+.++++|+.|++++|.++ .+
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~  196 (270)
T 2o6q_A          118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RV  196 (270)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CC
T ss_pred             CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cC
Confidence            999997777789999999999999999997777778999999999999999999877 6889999999999999999 56


Q ss_pred             chHHhhCCCccceeeccccccccc
Q 048551          228 PPVIGAKLPNLRKIVIALNNFTGP  251 (409)
Q Consensus       228 p~~~~~~l~~L~~L~L~~n~l~~~  251 (409)
                      |...+..+++|+.|++++|.+...
T Consensus       197 ~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          197 PEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             CHHHhccccCCCEEEecCCCeeCC
Confidence            665444899999999999998643

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=4.5e-24  Score=195.92  Aligned_cols=196  Identities=17%  Similarity=0.163  Sum_probs=171.1

Q ss_pred             CCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551           68 ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF  147 (409)
Q Consensus        68 ~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  147 (409)
                      .+++.|++++|.++ .++ .+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..++.+++|++|++
T Consensus        41 ~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  116 (272)
T 3rfs_A           41 NSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL  116 (272)
T ss_dssp             TTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence            38999999999998 444 588999999999999999863  47889999999999999999777777899999999999


Q ss_pred             ecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCccc
Q 048551          148 CVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGN  226 (409)
Q Consensus       148 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~  226 (409)
                      ++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++.++ .+..+++|+.|++++|.+++.
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  196 (272)
T 3rfs_A          117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV  196 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence            9999997777778999999999999999997777778999999999999999998877 678899999999999999955


Q ss_pred             CchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccc
Q 048551          227 LPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGK  275 (409)
Q Consensus       227 ~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  275 (409)
                      .+..+. .+++|+.|++++|.+.+.       +++|+.++++.|+++|.
T Consensus       197 ~~~~~~-~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~  237 (272)
T 3rfs_A          197 PDGVFD-RLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGV  237 (272)
T ss_dssp             CTTTTT-TCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGG
T ss_pred             CHHHHh-CCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCc
Confidence            444455 899999999999988743       55788888888888863

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=2.3e-23  Score=192.86  Aligned_cols=179  Identities=22%  Similarity=0.285  Sum_probs=155.8

Q ss_pred             ccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCc
Q 048551           88 LGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHL  167 (409)
Q Consensus        88 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  167 (409)
                      +.+++++++++++++.++ .+|..+.  +.+++|++++|.+++..+..+..+++|++|++++|.+++. +.. ..+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCC
Confidence            677889999999999998 6676554  7899999999999977788899999999999999999854 332 7889999


Q ss_pred             EEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeecccc
Q 048551          168 EADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALN  246 (409)
Q Consensus       168 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n  246 (409)
                      +|++++|.++ .+|..+..+++|++|++++|.+++.++ .+.++++|+.|++++|+++ .+|...+..+++|+.|++++|
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTS
T ss_pred             EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCCC
Confidence            9999999998 778888999999999999999998877 7889999999999999998 566655448899999999999


Q ss_pred             ccccccchhhhcCCCCCEEEcccCcCc
Q 048551          247 NFTGPLPDSFSNASNRERLELSYNQFR  273 (409)
Q Consensus       247 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~  273 (409)
                      ++++..+..+..+++|+.|++++|+++
T Consensus       159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          159 NLTELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cCCccCHHHhcCcCCCCEEECCCCcCC
Confidence            999666667788999999999999986

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.91  E-value=3.9e-24  Score=192.42  Aligned_cols=187  Identities=16%  Similarity=0.145  Sum_probs=159.4

Q ss_pred             CccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCc-CCccCCcccCCCCCCcEEEeec-ccccccCC
Q 048551           80 VQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNI-LAGEIPAEIGNLFKLEKLSFCV-IKLTGQLP  157 (409)
Q Consensus        80 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p  157 (409)
                      ++ .+|. +.  ++|++|++++|++++..+..|.++++|++|++++|+ +++..+..|..+++|++|++++ |.+++..+
T Consensus        23 l~-~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~   98 (239)
T 2xwt_C           23 IQ-RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP   98 (239)
T ss_dssp             CS-SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred             cc-ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence            44 5666 43  489999999999997777789999999999999997 8855556789999999999998 99986666


Q ss_pred             ccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCc---EEEccCC-cCcccCc-ccCCCCCCc-EEEeecCcCcccCchHH
Q 048551          158 ASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLF---YLNVGGN-QFSGMFL-PVYNLSSLE-MIYLHDNRLNGNLPPVI  231 (409)
Q Consensus       158 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~-~~~~l~~L~-~L~l~~n~l~~~~p~~~  231 (409)
                      ..|.++++|++|++++|.+++ +|. +..+++|+   +|++++| .+++..+ .+.++++|+ .|++++|.++ .+|...
T Consensus        99 ~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~  175 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYA  175 (239)
T ss_dssp             TSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTT
T ss_pred             HHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhh
Confidence            788999999999999999985 665 88888888   9999999 8988877 688899999 9999999998 888777


Q ss_pred             hhCCCccceeeccccc-cccccchhhhcC-CCCCEEEcccCcCcc
Q 048551          232 GAKLPNLRKIVIALNN-FTGPLPDSFSNA-SNRERLELSYNQFRG  274 (409)
Q Consensus       232 ~~~l~~L~~L~L~~n~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~~  274 (409)
                      + ..++|++|++++|+ +++..+..|..+ ++|+.|++++|++++
T Consensus       176 ~-~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~  219 (239)
T 2xwt_C          176 F-NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA  219 (239)
T ss_dssp             T-TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC
T ss_pred             c-CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc
Confidence            6 44899999999995 886667788888 999999999999874

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.91  E-value=7.8e-24  Score=190.45  Aligned_cols=197  Identities=14%  Similarity=0.116  Sum_probs=169.9

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCc-ccccCCccccCCCCCcEEEcCC-CcCCccCCcccCCCCCCcEEE
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNS-FSGTIPTNLSLRSKLMLFFANR-NILAGEIPAEIGNLFKLEKLS  146 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~  146 (409)
                      ++++|++++|++++..+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |.+++..+..|..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            69999999999997667789999999999999997 8866677899999999999998 999966667899999999999


Q ss_pred             eecccccccCCccccCCCCCc---EEeCCCC-CCCCCCCCCCCCCCCCc-EEEccCCcCcccCcccCCCCCCcEEEeecC
Q 048551          147 FCVIKLTGQLPASIQNLSSHL---EADSNRN-NFGGKIPESPGQLRSLF-YLNVGGNQFSGMFLPVYNLSSLEMIYLHDN  221 (409)
Q Consensus       147 L~~n~l~~~~p~~l~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n  221 (409)
                      +++|.+++ +|. +..+++|+   +|++++| .+++..+..|.++++|+ +|++++|.++..++.....++|+.|++++|
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n  189 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN  189 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTC
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCC
Confidence            99999995 776 88888888   9999999 99877777899999999 999999999977664344489999999999


Q ss_pred             c-CcccCchHHhhCC-CccceeeccccccccccchhhhcCCCCCEEEcccCc
Q 048551          222 R-LNGNLPPVIGAKL-PNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQ  271 (409)
Q Consensus       222 ~-l~~~~p~~~~~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~  271 (409)
                      + ++ .+|...+..+ ++|++|++++|++++ +|..  .+++|+.|+++++.
T Consensus       190 ~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          190 KYLT-VIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             TTCC-EECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred             CCcc-cCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence            5 88 6665544478 999999999999994 4543  67889999998763

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.90  E-value=2.8e-25  Score=210.05  Aligned_cols=209  Identities=13%  Similarity=0.169  Sum_probs=151.6

Q ss_pred             CCCCceeeecC--CCcEEEecCCCCccccCccccCC--CCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCcc-C
Q 048551           58 NLCEWTGVTCA--SLRFINIADNGVQGEIPNELGNL--VRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGE-I  132 (409)
Q Consensus        58 ~~c~~~g~~c~--~l~~L~L~~n~l~~~~p~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~  132 (409)
                      -|..|.++.|+  .++.++++++.+.   +..+..+  +++++|++++|.+++..+. +..+++|++|++++|.+++. +
T Consensus        35 vc~~W~~~~~~~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~  110 (336)
T 2ast_B           35 VCKRWYRLASDESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTL  110 (336)
T ss_dssp             SCHHHHHHHTCSTTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHH
T ss_pred             HHHHHHHHhcCchhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHH
Confidence            34478777653  4789999998887   3456666  7899999999999866555 55788899999998888755 7


Q ss_pred             CcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCC-CCCCC-CCCCCCCCCCCcEEEccCC-cCccc-Cc-cc
Q 048551          133 PAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRN-NFGGK-IPESPGQLRSLFYLNVGGN-QFSGM-FL-PV  207 (409)
Q Consensus       133 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~~-~~  207 (409)
                      |..+..+++|++|++++|.+++..+..++.+++|++|++++| .+++. ++..+..+++|++|++++| .+++. .+ .+
T Consensus       111 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  190 (336)
T 2ast_B          111 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV  190 (336)
T ss_dssp             HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH
T ss_pred             HHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHH
Confidence            777888888888888888888777777888888888888888 56642 4444566777788888777 66653 22 45


Q ss_pred             CCCC-CCcEEEeecC--cCc-ccCchHHhhCCCccceeeccccc-cccccchhhhcCCCCCEEEcccCc
Q 048551          208 YNLS-SLEMIYLHDN--RLN-GNLPPVIGAKLPNLRKIVIALNN-FTGPLPDSFSNASNRERLELSYNQ  271 (409)
Q Consensus       208 ~~l~-~L~~L~l~~n--~l~-~~~p~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~N~  271 (409)
                      ..++ +|++|++++|  .++ +.++..+. .+++|++|++++|. +++..+..+..+++|++|++++|.
T Consensus       191 ~~l~~~L~~L~l~~~~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          191 AHVSETITQLNLSGYRKNLQKSDLSTLVR-RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             HHSCTTCCEEECCSCGGGSCHHHHHHHHH-HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             HhcccCCCEEEeCCCcccCCHHHHHHHHh-hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence            5667 7777777777  344 34455444 57777777777777 555566667777777777777764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.90  E-value=1.7e-25  Score=213.98  Aligned_cols=261  Identities=13%  Similarity=0.075  Sum_probs=179.3

Q ss_pred             EEEecCCCCccccCccccCCCCCCEEEccCCcccccCC----ccccCCC-CCcEEEcCCCcCCccCCcccCCC-----CC
Q 048551           72 FINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIP----TNLSLRS-KLMLFFANRNILAGEIPAEIGNL-----FK  141 (409)
Q Consensus        72 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l-----~~  141 (409)
                      ..+++.|++++.+|..+...++|++|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            46788899998888777777779999999999986655    6677888 89999999999987666666654     89


Q ss_pred             CcEEEeecccccccCCcccc----CC-CCCcEEeCCCCCCCCCCCCC----CCC-CCCCcEEEccCCcCcccCc-----c
Q 048551          142 LEKLSFCVIKLTGQLPASIQ----NL-SSHLEADSNRNNFGGKIPES----PGQ-LRSLFYLNVGGNQFSGMFL-----P  206 (409)
Q Consensus       142 L~~L~L~~n~l~~~~p~~l~----~l-~~L~~L~l~~n~l~~~~~~~----~~~-l~~L~~L~l~~n~l~~~~~-----~  206 (409)
                      |++|++++|.+++..+..+.    .+ ++|++|++++|.+++..+..    +.. .++|++|++++|.+++...     .
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            99999999999866665443    44 78999999999987655433    333 3589999999998885432     3


Q ss_pred             cCCCC-CCcEEEeecCcCcccCchHHh---hCC-Cccceeeccccccccc----cchhhhc-CCCCCEEEcccCcCcccc
Q 048551          207 VYNLS-SLEMIYLHDNRLNGNLPPVIG---AKL-PNLRKIVIALNNFTGP----LPDSFSN-ASNRERLELSYNQFRGKS  276 (409)
Q Consensus       207 ~~~l~-~L~~L~l~~n~l~~~~p~~~~---~~l-~~L~~L~L~~n~l~~~----~p~~l~~-l~~L~~L~Ls~N~l~~~~  276 (409)
                      +...+ +|++|++++|.+++..+..+.   ... ++|++|++++|.+++.    ++..+.. .++|++|++++|++++..
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence            34454 899999999988865554333   134 5899999999988853    4455555 458999999999888755


Q ss_pred             chhhh-----hcccCcEEecccCCccccccccccCChh-ccCCCCCCccccCCCCCCCEEECcCCccccccchh
Q 048551          277 IWRSA-----ATSYSQRLNDDDQNHHGRQQNICYLPTG-ISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRL  344 (409)
Q Consensus       277 ~~~~~-----l~~l~~~L~l~~n~l~~~~~~l~~ip~~-~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~  344 (409)
                      ...+.     ..++ +.|++++|.+.       .+... +..+..-    +..+++|+.||+++|++.+..+..
T Consensus       242 ~~~l~~~~~~l~~L-~~L~L~~n~l~-------~i~~~~~~~l~~~----~~~l~~L~~LdL~~N~l~~~~~~~  303 (362)
T 3goz_A          242 LENLKLLKDSLKHL-QTVYLDYDIVK-------NMSKEQCKALGAA----FPNIQKIILVDKNGKEIHPSHSIP  303 (362)
T ss_dssp             HHHHHHTTTTTTTC-SEEEEEHHHHT-------TCCHHHHHHHHTT----STTCCEEEEECTTSCBCCGGGCHH
T ss_pred             HHHHHHHHhcCCCc-cEEEeccCCcc-------ccCHHHHHHHHHH----hccCCceEEEecCCCcCCCcchHH
Confidence            32111     2334 66677666644       22211 1111000    233456677777777776554433

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.90  E-value=6.5e-25  Score=223.30  Aligned_cols=314  Identities=11%  Similarity=-0.003  Sum_probs=179.7

Q ss_pred             CcEEEecCCC-Ccc-ccCccccCCCCCCEEEccCCccccc----CCccccCCCCCcEEEcCCCcCC----ccCCcccCCC
Q 048551           70 LRFINIADNG-VQG-EIPNELGNLVRLEKLILANNSFSGT----IPTNLSLRSKLMLFFANRNILA----GEIPAEIGNL  139 (409)
Q Consensus        70 l~~L~L~~n~-l~~-~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~----~~~p~~~~~l  139 (409)
                      |++|++++|. ++. .++.....+++|++|+|++|.+++.    ++..+..+++|++|++++|.++    +.++..+..+
T Consensus       140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~  219 (592)
T 3ogk_B          140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC  219 (592)
T ss_dssp             CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred             CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence            8888888776 221 1223334678888888888877654    3334456788888888888776    2334445667


Q ss_pred             CCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCC---CCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEE
Q 048551          140 FKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFG---GKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMI  216 (409)
Q Consensus       140 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L  216 (409)
                      ++|++|++++|.+.+ +|..+.++++|++|+++.....   +..+..+..+++|+.|+++++.....+..+..+++|++|
T Consensus       220 ~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L  298 (592)
T 3ogk_B          220 RSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKL  298 (592)
T ss_dssp             TTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEE
T ss_pred             CCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEE
Confidence            888888888887773 5666777777777777643221   122233344444444444443222222233344444444


Q ss_pred             EeecCcCcccCc------------------------hHHhhCCCccceeecc-----------ccccccc-cchhhhcCC
Q 048551          217 YLHDNRLNGNLP------------------------PVIGAKLPNLRKIVIA-----------LNNFTGP-LPDSFSNAS  260 (409)
Q Consensus       217 ~l~~n~l~~~~p------------------------~~~~~~l~~L~~L~L~-----------~n~l~~~-~p~~l~~l~  260 (409)
                      ++++|.+++...                        ..+...+++|++|+++           .|.+++. ++.....++
T Consensus       299 ~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~  378 (592)
T 3ogk_B          299 DLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ  378 (592)
T ss_dssp             EETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCT
T ss_pred             ecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCc
Confidence            444444332222                        2222244555555555           2333322 111223455


Q ss_pred             CCCEEEcccCcCccccchhhh--hcccCcEEecc----cCCccccccccccCChhccCCCCCCccccC------------
Q 048551          261 NRERLELSYNQFRGKSIWRSA--ATSYSQRLNDD----DQNHHGRQQNICYLPTGISNLVNLDSLATD------------  322 (409)
Q Consensus       261 ~L~~L~Ls~N~l~~~~~~~~~--l~~l~~~L~l~----~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~------------  322 (409)
                      +|++|+++.|.+++..+..+.  .+++ +.|+++    .|.+++. +.-..++..+..+++|+.|++.            
T Consensus       379 ~L~~L~l~~~~l~~~~~~~l~~~~~~L-~~L~l~~~~~~n~l~~~-p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~  456 (592)
T 3ogk_B          379 ELEYMAVYVSDITNESLESIGTYLKNL-CDFRLVLLDREERITDL-PLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS  456 (592)
T ss_dssp             TCSEEEEEESCCCHHHHHHHHHHCCSC-CEEEEEECSCCSCCSSC-CCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred             cCeEEEeecCCccHHHHHHHHhhCCCC-cEEEEeecCCCccccCc-hHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence            555555555555544322221  2233 566664    4444410 0000123335668888888852            


Q ss_pred             ----CCCCCCEEECcCCccccc-cchhhhcCCCCcEEEe-eccceec-CCCC-CCCCCCCeecccCCCCceec
Q 048551          323 ----SLKSIEELDLSSNNLSGQ-LPRLLVNLSFLVLLNL-YNHFDGE-VPTK-GVFNNKTRISLAGNGKLCGG  387 (409)
Q Consensus       323 ----~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L-~n~l~~~-~p~~-~~~~~L~~L~l~~Np~l~g~  387 (409)
                          .+++|++|++++|++++. ++..+..+++|++|++ +|.+++. ++.. ..+++|+.|++++|+ +++.
T Consensus       457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~-it~~  528 (592)
T 3ogk_B          457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR-ASMT  528 (592)
T ss_dssp             HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB-CCTT
T ss_pred             HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc-CCHH
Confidence                378899999999999863 4556678999999999 8887644 2322 468999999999995 6643

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.90  E-value=7.4e-23  Score=191.21  Aligned_cols=194  Identities=23%  Similarity=0.329  Sum_probs=168.1

Q ss_pred             cCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEE
Q 048551           67 CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS  146 (409)
Q Consensus        67 c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  146 (409)
                      +.++++|++++|+++ .++ .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++ ++ .+..+++|++|+
T Consensus        40 l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~  113 (308)
T 1h6u_A           40 LDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLD  113 (308)
T ss_dssp             HHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEE
T ss_pred             cCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEE
Confidence            348999999999998 566 68899999999999999995444  8999999999999999985 44 688999999999


Q ss_pred             eecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCccc
Q 048551          147 FCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGN  226 (409)
Q Consensus       147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~  226 (409)
                      +++|.+++ ++ .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++..+ +..+++|+.|++++|.++ .
T Consensus       114 l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~-~  187 (308)
T 1h6u_A          114 LTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKIS-D  187 (308)
T ss_dssp             CTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-C
T ss_pred             CCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccC-c
Confidence            99999985 44 38999999999999999986543  8889999999999999988655 889999999999999998 5


Q ss_pred             CchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCcccc
Q 048551          227 LPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKS  276 (409)
Q Consensus       227 ~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  276 (409)
                      ++. +. .+++|++|++++|++++..+  +..+++|+.|++++|++++.+
T Consensus       188 ~~~-l~-~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~  233 (308)
T 1h6u_A          188 ISP-LA-SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQP  233 (308)
T ss_dssp             CGG-GG-GCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCC
T ss_pred             Chh-hc-CCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCC
Confidence            554 44 79999999999999996553  889999999999999998654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.90  E-value=2.8e-25  Score=214.35  Aligned_cols=263  Identities=16%  Similarity=0.154  Sum_probs=165.1

Q ss_pred             ccCccccCCCCCCEEEccCCcccccC----CccccCCCCCcEEEcCCC---cCCccCCccc-------CCCCCCcEEEee
Q 048551           83 EIPNELGNLVRLEKLILANNSFSGTI----PTNLSLRSKLMLFFANRN---ILAGEIPAEI-------GNLFKLEKLSFC  148 (409)
Q Consensus        83 ~~p~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n---~l~~~~p~~~-------~~l~~L~~L~L~  148 (409)
                      .++..+..+++|++|+|++|.+++..    +..+..+++|++|++++|   ++++.+|..+       ..+++|++|+++
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            45566777777888888888777553    334667778888888775   3444455444       567778888888


Q ss_pred             cccccc----cCCccccCCCCCcEEeCCCCCCCCCCCCCCC----CC---------CCCcEEEccCCcCcc-cCc----c
Q 048551          149 VIKLTG----QLPASIQNLSSHLEADSNRNNFGGKIPESPG----QL---------RSLFYLNVGGNQFSG-MFL----P  206 (409)
Q Consensus       149 ~n~l~~----~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~----~l---------~~L~~L~l~~n~l~~-~~~----~  206 (409)
                      +|.+++    .+|..+..+++|++|++++|.+++..+..+.    .+         ++|++|++++|.++. ..+    .
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  182 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  182 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence            887775    3566677777888888888777533222222    22         677888888887752 122    3


Q ss_pred             cCCCCCCcEEEeecCcCcc-----cCchHHhhCCCccceeeccccccc----cccchhhhcCCCCCEEEcccCcCccccc
Q 048551          207 VYNLSSLEMIYLHDNRLNG-----NLPPVIGAKLPNLRKIVIALNNFT----GPLPDSFSNASNRERLELSYNQFRGKSI  277 (409)
Q Consensus       207 ~~~l~~L~~L~l~~n~l~~-----~~p~~~~~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~~~  277 (409)
                      +..+++|+.|++++|.++.     .++..+. .+++|++|++++|.++    +.+|..+..+++|++|++++|++++...
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~-~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  261 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA-YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA  261 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGG-GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred             HHhCCCcCEEECcCCCCCHhHHHHHHHHHhh-cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence            4566778888888887762     1222444 6777888888888775    4566777777888888888887765321


Q ss_pred             hhhhhcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCCcccc----ccchhh-hcCCCCc
Q 048551          278 WRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSG----QLPRLL-VNLSFLV  352 (409)
Q Consensus       278 ~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~----~~p~~~-~~l~~L~  352 (409)
                      .                          .++..+.         ...+++|++|+|++|++++    .+|..+ .++++|+
T Consensus       262 ~--------------------------~l~~~l~---------~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~  306 (386)
T 2ca6_A          262 A--------------------------AVVDAFS---------KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL  306 (386)
T ss_dssp             H--------------------------HHHHHHH---------TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCC
T ss_pred             H--------------------------HHHHHHh---------hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCce
Confidence            1                          1222221         1124666777777777775    366665 5567777


Q ss_pred             EEEe-eccceecCC--CC--CCCCCCCeecccCC
Q 048551          353 LLNL-YNHFDGEVP--TK--GVFNNKTRISLAGN  381 (409)
Q Consensus       353 ~L~L-~n~l~~~~p--~~--~~~~~L~~L~l~~N  381 (409)
                      +|++ +|.+.+..+  ..  ..+++++.+++..+
T Consensus       307 ~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~~  340 (386)
T 2ca6_A          307 FLELNGNRFSEEDDVVDEIREVFSTRGRGELDEL  340 (386)
T ss_dssp             EEECTTSBSCTTSHHHHHHHHHHHHHTCCEECCC
T ss_pred             EEEccCCcCCcchhHHHHHHHHhhhcCcchhhhc
Confidence            7777 677665543  11  23444444444443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=1.1e-23  Score=197.09  Aligned_cols=223  Identities=14%  Similarity=0.116  Sum_probs=156.4

Q ss_pred             CCcEEEecCCCCcccc-Cc--cccCCCCCCEEEccCCcccccCCccc--cCCCCCcEEEcCCCcCCccCC----cccCCC
Q 048551           69 SLRFINIADNGVQGEI-PN--ELGNLVRLEKLILANNSFSGTIPTNL--SLRSKLMLFFANRNILAGEIP----AEIGNL  139 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~-p~--~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~p----~~~~~l  139 (409)
                      .++.+.+.++.++... ..  .+..+++|++|++++|.+++..|..+  ..+++|++|++++|.+++..+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            5677777777765321 10  12234568888888888887777777  778888888888888876544    234567


Q ss_pred             CCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCC--C--CCCCCCCCCCcEEEccCCcCcccCc----ccCCCC
Q 048551          140 FKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGK--I--PESPGQLRSLFYLNVGGNQFSGMFL----PVYNLS  211 (409)
Q Consensus       140 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~--~--~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~l~  211 (409)
                      ++|++|++++|.+++..+..+..+++|++|++++|++.+.  +  +..+..+++|++|++++|.++....    .+..++
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~  224 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV  224 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence            7888888888888776677788888888888888887642  1  2334677888888888888864433    135678


Q ss_pred             CCcEEEeecCcCcccCchHHhhCC---CccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcE
Q 048551          212 SLEMIYLHDNRLNGNLPPVIGAKL---PNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQR  288 (409)
Q Consensus       212 ~L~~L~l~~n~l~~~~p~~~~~~l---~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~  288 (409)
                      +|++|++++|.+++..|..++ .+   ++|++|++++|+++ .+|..+.  ++|++|++++|++++.+.. ..++++ +.
T Consensus       225 ~L~~L~Ls~N~l~~~~p~~~~-~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~~-~~l~~L-~~  298 (310)
T 4glp_A          225 QPHSLDLSHNSLRATVNPSAP-RCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQP-DELPEV-DN  298 (310)
T ss_dssp             CCSSEECTTSCCCCCCCSCCS-SCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCCT-TSCCCC-SC
T ss_pred             CCCEEECCCCCCCccchhhHH-hccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCchh-hhCCCc-cE
Confidence            888888888888866566655 44   58888888888888 5566553  6888888888888875431 113444 78


Q ss_pred             EecccCCcc
Q 048551          289 LNDDDQNHH  297 (409)
Q Consensus       289 L~l~~n~l~  297 (409)
                      |++++|.++
T Consensus       299 L~L~~N~l~  307 (310)
T 4glp_A          299 LTLDGNPFL  307 (310)
T ss_dssp             EECSSTTTS
T ss_pred             EECcCCCCC
Confidence            888888776

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=2.8e-24  Score=205.57  Aligned_cols=253  Identities=17%  Similarity=0.115  Sum_probs=181.5

Q ss_pred             EEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCC----cccCCCC-CCcEEEeecccccccCCccccCC-----CC
Q 048551           96 KLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIP----AEIGNLF-KLEKLSFCVIKLTGQLPASIQNL-----SS  165 (409)
Q Consensus        96 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p----~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l-----~~  165 (409)
                      .+++++|.+++.+|..+...++|++|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            46889999998888877777789999999999996655    6678888 89999999999997777777765     89


Q ss_pred             CcEEeCCCCCCCCCCCCCC----CCC-CCCcEEEccCCcCcccCc-c----cCC-CCCCcEEEeecCcCcccCc----hH
Q 048551          166 HLEADSNRNNFGGKIPESP----GQL-RSLFYLNVGGNQFSGMFL-P----VYN-LSSLEMIYLHDNRLNGNLP----PV  230 (409)
Q Consensus       166 L~~L~l~~n~l~~~~~~~~----~~l-~~L~~L~l~~n~l~~~~~-~----~~~-l~~L~~L~l~~n~l~~~~p----~~  230 (409)
                      |++|++++|.+++..+..+    ..+ ++|++|++++|.+++... .    +.. .++|++|++++|.+++..+    ..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            9999999999987665533    344 799999999999987665 3    333 3699999999999985433    33


Q ss_pred             HhhCCC-ccceeeccccccccccchhh----hcC-CCCCEEEcccCcCccccchhhh-----hc-ccCcEEecccCCccc
Q 048551          231 IGAKLP-NLRKIVIALNNFTGPLPDSF----SNA-SNRERLELSYNQFRGKSIWRSA-----AT-SYSQRLNDDDQNHHG  298 (409)
Q Consensus       231 ~~~~l~-~L~~L~L~~n~l~~~~p~~l----~~l-~~L~~L~Ls~N~l~~~~~~~~~-----l~-~l~~~L~l~~n~l~~  298 (409)
                      +. ..+ +|++|++++|++++..+..+    ..+ ++|++|++++|++++.....+.     .. ++ +.|++++|.++ 
T Consensus       162 l~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L-~~L~Ls~N~l~-  238 (362)
T 3goz_A          162 LA-AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV-VSLNLCLNCLH-  238 (362)
T ss_dssp             HH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTC-CEEECCSSCCC-
T ss_pred             Hh-cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCc-eEEECcCCCCC-
Confidence            44 444 89999999999987766544    445 5999999999999875422111     12 34 77777777776 


Q ss_pred             cccccccCChhccCCCCCCccccCCCCCCCEEECcCCcccccc-------chhhhcCCCCcEEEe-eccceec
Q 048551          299 RQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQL-------PRLLVNLSFLVLLNL-YNHFDGE  363 (409)
Q Consensus       299 ~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~-------p~~~~~l~~L~~L~L-~n~l~~~  363 (409)
                           ..-+..+..+       +..+++|++|++++|++.+..       +..+..+++|++||+ +|++.+.
T Consensus       239 -----~~~~~~l~~~-------~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          239 -----GPSLENLKLL-------KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             -----CCCHHHHHHT-------TTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             -----cHHHHHHHHH-------HhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence                 1111122111       334566777777777744322       224455666777777 6666544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=8.7e-25  Score=210.87  Aligned_cols=253  Identities=21%  Similarity=0.213  Sum_probs=195.7

Q ss_pred             cCCCcEEEecCCCCccc----cCccccCCCCCCEEEccCC---cccccCCccc-------cCCCCCcEEEcCCCcCCc--
Q 048551           67 CASLRFINIADNGVQGE----IPNELGNLVRLEKLILANN---SFSGTIPTNL-------SLRSKLMLFFANRNILAG--  130 (409)
Q Consensus        67 c~~l~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n---~l~~~~~~~~-------~~l~~L~~L~l~~n~l~~--  130 (409)
                      |.++++|++++|.+++.    ++..+..+++|++|+|++|   .+++.+|..+       ..+++|++|++++|.+++  
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            44899999999999866    3445778999999999996   4555566555       689999999999999996  


Q ss_pred             --cCCcccCCCCCCcEEEeecccccccCCccc----cCC---------CCCcEEeCCCCCCC-CCCC---CCCCCCCCCc
Q 048551          131 --EIPAEIGNLFKLEKLSFCVIKLTGQLPASI----QNL---------SSHLEADSNRNNFG-GKIP---ESPGQLRSLF  191 (409)
Q Consensus       131 --~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l----~~l---------~~L~~L~l~~n~l~-~~~~---~~~~~l~~L~  191 (409)
                        .+|..+..+++|++|++++|.++...+..+    ..+         ++|++|++++|.++ +.++   ..+..+++|+
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  190 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  190 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence              467788899999999999999975444433    344         89999999999997 3344   3566788999


Q ss_pred             EEEccCCcCcc-----cCc-ccCCCCCCcEEEeecCcCc----ccCchHHhhCCCccceeeccccccccc----cchhhh
Q 048551          192 YLNVGGNQFSG-----MFL-PVYNLSSLEMIYLHDNRLN----GNLPPVIGAKLPNLRKIVIALNNFTGP----LPDSFS  257 (409)
Q Consensus       192 ~L~l~~n~l~~-----~~~-~~~~l~~L~~L~l~~n~l~----~~~p~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~  257 (409)
                      +|++++|.++.     ..+ .+..+++|+.|++++|.++    +.+|..+. .+++|++|++++|.+++.    ++..+.
T Consensus       191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~  269 (386)
T 2ca6_A          191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK-SWPNLRELGLNDCLLSARGAAAVVDAFS  269 (386)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG-GCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred             EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc-cCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence            99999999983     344 6788999999999999996    56787776 899999999999999865    556664


Q ss_pred             c--CCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCC
Q 048551          258 N--ASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSN  335 (409)
Q Consensus       258 ~--l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N  335 (409)
                      .  +++|++|++++|++++...                          ..+|..+          +.++++|++|++++|
T Consensus       270 ~~~~~~L~~L~L~~n~i~~~g~--------------------------~~l~~~l----------~~~l~~L~~L~l~~N  313 (386)
T 2ca6_A          270 KLENIGLQTLRLQYNEIELDAV--------------------------RTLKTVI----------DEKMPDLLFLELNGN  313 (386)
T ss_dssp             TCSSCCCCEEECCSSCCBHHHH--------------------------HHHHHHH----------HHHCTTCCEEECTTS
T ss_pred             hccCCCeEEEECcCCcCCHHHH--------------------------HHHHHHH----------HhcCCCceEEEccCC
Confidence            3  8999999999999985211                          1244433          123477899999999


Q ss_pred             ccccccc--hhh-hcCCCCcEEEe
Q 048551          336 NLSGQLP--RLL-VNLSFLVLLNL  356 (409)
Q Consensus       336 ~l~~~~p--~~~-~~l~~L~~L~L  356 (409)
                      ++++..+  ..+ ..++.++..++
T Consensus       314 ~l~~~~~~~~~l~~~l~~~~~~~l  337 (386)
T 2ca6_A          314 RFSEEDDVVDEIREVFSTRGRGEL  337 (386)
T ss_dssp             BSCTTSHHHHHHHHHHHHHTCCEE
T ss_pred             cCCcchhHHHHHHHHhhhcCcchh
Confidence            9997764  332 23455555555

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=2.7e-22  Score=181.72  Aligned_cols=179  Identities=20%  Similarity=0.209  Sum_probs=161.1

Q ss_pred             CCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeC
Q 048551           92 VRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADS  171 (409)
Q Consensus        92 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l  171 (409)
                      ...++++++++.++ .+|..+.  +.++.|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|++
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            35789999999999 6776664  68999999999999877888999999999999999999888888999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccCch-HHhhCCCccceeeccccccc
Q 048551          172 NRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLPP-VIGAKLPNLRKIVIALNNFT  249 (409)
Q Consensus       172 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~-~~~~~l~~L~~L~L~~n~l~  249 (409)
                      ++|.+++..+..|..+++|++|++++|.+++.++ .+..+++|+.|++++|.++ .+|. .+. .+++|++|++++|+++
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~-~l~~L~~L~L~~N~l~  168 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFD-KLTNLQTLSLSTNQLQ  168 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT-TCTTCCEEECCSSCCS
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC-ccCHHHcC-cCcCCCEEECCCCcCC
Confidence            9999998777888999999999999999998877 6788999999999999999 5555 455 8999999999999999


Q ss_pred             cccchhhhcCCCCCEEEcccCcCccc
Q 048551          250 GPLPDSFSNASNRERLELSYNQFRGK  275 (409)
Q Consensus       250 ~~~p~~l~~l~~L~~L~Ls~N~l~~~  275 (409)
                      +..+..+..+++|+.|++++|+++..
T Consensus       169 ~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          169 SVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             ccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            87777899999999999999999875

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.89  E-value=3.2e-22  Score=175.96  Aligned_cols=186  Identities=21%  Similarity=0.219  Sum_probs=157.5

Q ss_pred             CCCCCceeeecCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCccc
Q 048551           57 VNLCEWTGVTCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEI  136 (409)
Q Consensus        57 ~~~c~~~g~~c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~  136 (409)
                      ...|.|.++.|.        +++++ .+|..+  .++|++|++++|++++..+..|..+++|++|++++|++++..+..|
T Consensus         4 ~C~C~~~~v~c~--------~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~   72 (208)
T 2o6s_A            4 RCSCSGTTVECY--------SQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVF   72 (208)
T ss_dssp             TCEEETTEEECC--------SSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT
T ss_pred             CCEECCCEEEec--------CCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhc
Confidence            345778777664        56666 566554  4689999999999997777778999999999999999996555668


Q ss_pred             CCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcE
Q 048551          137 GNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEM  215 (409)
Q Consensus       137 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~  215 (409)
                      ..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+ .+..+++|+.
T Consensus        73 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~  152 (208)
T 2o6s_A           73 NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY  152 (208)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             CCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccE
Confidence            899999999999999996666668899999999999999997777778999999999999999998777 5788999999


Q ss_pred             EEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCC
Q 048551          216 IYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASN  261 (409)
Q Consensus       216 L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  261 (409)
                      |++++|.+.+        .+++|+.|+++.|+++|.+|..++.++.
T Consensus       153 L~l~~N~~~~--------~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          153 IWLHDNPWDC--------TCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             EECCSCCBCC--------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             EEecCCCeec--------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence            9999998773        4578999999999999999998887654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=2.7e-22  Score=187.34  Aligned_cols=173  Identities=18%  Similarity=0.243  Sum_probs=137.4

Q ss_pred             ccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCc
Q 048551           88 LGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHL  167 (409)
Q Consensus        88 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  167 (409)
                      ...+++|++|++++|.++. ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ ++ .+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~  110 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIK  110 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCC
T ss_pred             HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCC
Confidence            4567889999999999884 45 58889999999999999984 444 8889999999999999884 33 688888999


Q ss_pred             EEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccc
Q 048551          168 EADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNN  247 (409)
Q Consensus       168 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~  247 (409)
                      +|++++|.+++. + .+..+++|++|++++|.+++..+ +..+++|+.|++++|.++ .++. +. .+++|+.|++++|.
T Consensus       111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~-~l~~L~~L~l~~n~  184 (308)
T 1h6u_A          111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVS-DLTP-LA-NLSKLTTLKADDNK  184 (308)
T ss_dssp             EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSC
T ss_pred             EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCC-CChh-hc-CCCCCCEEECCCCc
Confidence            999999988853 3 27888888888888888877654 777888888888888887 4554 44 78888888888888


Q ss_pred             cccccchhhhcCCCCCEEEcccCcCcc
Q 048551          248 FTGPLPDSFSNASNRERLELSYNQFRG  274 (409)
Q Consensus       248 l~~~~p~~l~~l~~L~~L~Ls~N~l~~  274 (409)
                      +++..+  +..+++|++|++++|++++
T Consensus       185 l~~~~~--l~~l~~L~~L~L~~N~l~~  209 (308)
T 1h6u_A          185 ISDISP--LASLPNLIEVHLKNNQISD  209 (308)
T ss_dssp             CCCCGG--GGGCTTCCEEECTTSCCCB
T ss_pred             cCcChh--hcCCCCCCEEEccCCccCc
Confidence            875433  7778888888888888764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.88  E-value=5.1e-22  Score=188.90  Aligned_cols=239  Identities=17%  Similarity=0.111  Sum_probs=182.2

Q ss_pred             cEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCC-cccCCCCCCcE-EEee
Q 048551           71 RFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIP-AEIGNLFKLEK-LSFC  148 (409)
Q Consensus        71 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~-L~L~  148 (409)
                      ++++.++++++ .+|..+.  +++++|+|++|+|+...+..|.++++|++|++++|++.+.+| ..|.+++++++ +.+.
T Consensus        12 ~~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            45666788888 7887663  689999999999996555679999999999999999876666 45788888775 5667


Q ss_pred             cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccC-CcCcccCc-ccCCCC-CCcEEEeecCcCcc
Q 048551          149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGG-NQFSGMFL-PVYNLS-SLEMIYLHDNRLNG  225 (409)
Q Consensus       149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~-~~~~l~-~L~~L~l~~n~l~~  225 (409)
                      +|+++...|..|..+++|++|++++|.+.+..+..+....++..+++.+ +.+....+ .+..+. .++.|++++|+++ 
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-  167 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-  167 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence            7899977788899999999999999999877666777778888999866 56776665 566654 6889999999998 


Q ss_pred             cCchHHhhCCCccceeeccc-cccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccc
Q 048551          226 NLPPVIGAKLPNLRKIVIAL-NNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNIC  304 (409)
Q Consensus       226 ~~p~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~  304 (409)
                      .+|...+ ...+|+++++.+ |.++...+..|.++++|++|++++|+++..+...+.  .+ +.|...++.--      +
T Consensus       168 ~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~--~L-~~L~~l~~~~l------~  237 (350)
T 4ay9_X          168 EIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE--NL-KKLRARSTYNL------K  237 (350)
T ss_dssp             EECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT--TC-CEEECTTCTTC------C
T ss_pred             CCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc--cc-hHhhhccCCCc------C
Confidence            7888777 678899999975 667644445789999999999999999876543322  22 44444433211      2


Q ss_pred             cCChhccCCCCCCccccCCCCCCCEEECcCC
Q 048551          305 YLPTGISNLVNLDSLATDSLKSIEELDLSSN  335 (409)
Q Consensus       305 ~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N  335 (409)
                      .+|.            +.++++|+.++++++
T Consensus       238 ~lP~------------l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          238 KLPT------------LEKLVALMEASLTYP  256 (350)
T ss_dssp             CCCC------------TTTCCSCCEEECSCH
T ss_pred             cCCC------------chhCcChhhCcCCCC
Confidence            4442            334577788888764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.88  E-value=5.2e-24  Score=216.62  Aligned_cols=315  Identities=14%  Similarity=0.069  Sum_probs=212.5

Q ss_pred             ecCCCcEEEecCCCCccccCccccC-CC-CCCEEEccCCc-ccc-cCCccccCCCCCcEEEcCCCcCCcc----CCcccC
Q 048551           66 TCASLRFINIADNGVQGEIPNELGN-LV-RLEKLILANNS-FSG-TIPTNLSLRSKLMLFFANRNILAGE----IPAEIG  137 (409)
Q Consensus        66 ~c~~l~~L~L~~n~l~~~~p~~~~~-l~-~L~~L~L~~n~-l~~-~~~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~  137 (409)
                      .|.++++|+|++|.+++..+..+.. ++ +|++|++++|. ++. .++.....+++|++|++++|.+++.    ++..+.
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            5779999999999998776666665 34 49999999986 321 1233345789999999999998765    333456


Q ss_pred             CCCCCcEEEeeccccc----ccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCc---ccC-cccCC
Q 048551          138 NLFKLEKLSFCVIKLT----GQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFS---GMF-LPVYN  209 (409)
Q Consensus       138 ~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~-~~~~~  209 (409)
                      .+++|++|++++|.++    +.++..+.++++|++|++++|.+.+ ++..+..+++|++|+++.....   ... ..+..
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence            7899999999999997    3445556788999999999999885 5677888999999999864332   111 26778


Q ss_pred             CCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccc-hhhhcCCCCCEEEcccCcCccccchhhh--hcccC
Q 048551          210 LSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLP-DSFSNASNRERLELSYNQFRGKSIWRSA--ATSYS  286 (409)
Q Consensus       210 l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~--l~~l~  286 (409)
                      +++|+.++++++... .+|..+. .+++|++|++++|.+++... ..+..+++|++|+++ +.+.+..+....  .+++ 
T Consensus       269 ~~~L~~L~l~~~~~~-~l~~~~~-~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L-  344 (592)
T 3ogk_B          269 PRKLCRLGLSYMGPN-EMPILFP-FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQL-  344 (592)
T ss_dssp             CTTCCEEEETTCCTT-TGGGGGG-GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTC-
T ss_pred             cccccccCccccchh-HHHHHHh-hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCC-
Confidence            899999999986544 6776665 78999999999999775433 345778888888887 444433322221  3344 


Q ss_pred             cEEecc-----------cCCccc--------ccccc-----------ccCChhccC-CCCCCccccC-------------
Q 048551          287 QRLNDD-----------DQNHHG--------RQQNI-----------CYLPTGISN-LVNLDSLATD-------------  322 (409)
Q Consensus       287 ~~L~l~-----------~n~l~~--------~~~~l-----------~~ip~~~~~-l~~L~~L~~~-------------  322 (409)
                      +.|+++           .|.+++        .+++|           +..+..+.. +++|+.|++.             
T Consensus       345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~  424 (592)
T 3ogk_B          345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL  424 (592)
T ss_dssp             CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred             CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH
Confidence            677777           244442        01111           111112222 4455555432             


Q ss_pred             ---------CCCCCCEEECcCC--ccccccchhhhc-CCCCcEEEe-eccceec-CCCC-CCCCCCCeecccCCCCcee
Q 048551          323 ---------SLKSIEELDLSSN--NLSGQLPRLLVN-LSFLVLLNL-YNHFDGE-VPTK-GVFNNKTRISLAGNGKLCG  386 (409)
Q Consensus       323 ---------~l~~L~~L~Ls~N--~l~~~~p~~~~~-l~~L~~L~L-~n~l~~~-~p~~-~~~~~L~~L~l~~Np~l~g  386 (409)
                               ++++|++|++++|  .+++..+..+.. +++|++|++ +|++++. ++.. ..+++|++|++++|+ +++
T Consensus       425 ~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~  502 (592)
T 3ogk_B          425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSE  502 (592)
T ss_dssp             HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBH
T ss_pred             HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcH
Confidence                     2566777777543  355544444433 777888888 7776652 2322 467889999999986 553

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=1.8e-23  Score=197.66  Aligned_cols=247  Identities=13%  Similarity=0.144  Sum_probs=188.3

Q ss_pred             CCCCEEEccCCcccccCCccccCC--CCCcEEEcCCCcCCccCCcccCCCCCCcEEEeeccccccc-CCccccCCCCCcE
Q 048551           92 VRLEKLILANNSFSGTIPTNLSLR--SKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQ-LPASIQNLSSHLE  168 (409)
Q Consensus        92 ~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~  168 (409)
                      ..++.++++++.+.   +..+..+  +.++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++
T Consensus        47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            34889999999887   3456666  8999999999999966554 56789999999999998865 7788899999999


Q ss_pred             EeCCCCCCCCCCCCCCCCCCCCcEEEccCC-cCccc-Cc-ccCCCCCCcEEEeecC-cCccc-CchHHhhCCC-ccceee
Q 048551          169 ADSNRNNFGGKIPESPGQLRSLFYLNVGGN-QFSGM-FL-PVYNLSSLEMIYLHDN-RLNGN-LPPVIGAKLP-NLRKIV  242 (409)
Q Consensus       169 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~-~~~~l~~L~~L~l~~n-~l~~~-~p~~~~~~l~-~L~~L~  242 (409)
                      |++++|.+++..+..++.+++|++|++++| .+++. .+ .+.++++|++|++++| .+++. ++..+. .++ +|++|+
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~l~~~L~~L~  201 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA-HVSETITQLN  201 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH-HSCTTCCEEE
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH-hcccCCCEEE
Confidence            999999998777778888999999999999 67752 33 5778899999999999 88854 555565 788 999999


Q ss_pred             cccc--ccc-cccchhhhcCCCCCEEEcccCc-CccccchhhhhcccCcEEecccCCccccccccccCChhccCCCCCCc
Q 048551          243 IALN--NFT-GPLPDSFSNASNRERLELSYNQ-FRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDS  318 (409)
Q Consensus       243 L~~n--~l~-~~~p~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~  318 (409)
                      +++|  .++ +.+|..+..+++|++|++++|. +++.                              .+..+.       
T Consensus       202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~------------------------------~~~~l~-------  244 (336)
T 2ast_B          202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND------------------------------CFQEFF-------  244 (336)
T ss_dssp             CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG------------------------------GGGGGG-------
T ss_pred             eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHH------------------------------HHHHHh-------
Confidence            9999  455 4567778889999999999998 5532                              222222       


Q ss_pred             cccCCCCCCCEEECcCCc-cccccchhhhcCCCCcEEEe-eccceecCCCC--CCC-CCCCeecccCCCCceecCCC
Q 048551          319 LATDSLKSIEELDLSSNN-LSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK--GVF-NNKTRISLAGNGKLCGGFDG  390 (409)
Q Consensus       319 L~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~--~~~-~~L~~L~l~~Np~l~g~~p~  390 (409)
                          .+++|++|++++|. ++......+.++++|++|++ +|     ++..  ..+ ..+..|++++| .++|..|.
T Consensus       245 ----~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n-~l~~~~~~  311 (336)
T 2ast_B          245 ----QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCS-HFTTIARP  311 (336)
T ss_dssp             ----GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCC-CSCCTTCS
T ss_pred             ----CCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEecc-cCccccCC
Confidence                34677888888884 33322335777888888888 55     3332  222 34666777777 78877775

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.88  E-value=4.6e-22  Score=199.70  Aligned_cols=197  Identities=20%  Similarity=0.227  Sum_probs=167.1

Q ss_pred             CCCCCCCCC-----Cceee-ecC--CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEc
Q 048551           52 SLTNSVNLC-----EWTGV-TCA--SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFA  123 (409)
Q Consensus        52 ~w~~~~~~c-----~~~g~-~c~--~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  123 (409)
                      +|..+..+|     .|.++ .|.  +++.|++++|++++ +|..+.  ++|++|+|++|.|+ .+|   ..+++|++|++
T Consensus        35 ~W~~~~~~~~~~~~~~~~l~~C~~~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~L  107 (571)
T 3cvr_A           35 KWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDA  107 (571)
T ss_dssp             HHHTTCCTTCCHHHHHHHHHHHHHTTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEEC
T ss_pred             HHhccCCccccccchhhhccccccCCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEc
Confidence            454455667     68888 554  89999999999995 787663  89999999999999 677   45799999999


Q ss_pred             CCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCccc
Q 048551          124 NRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGM  203 (409)
Q Consensus       124 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  203 (409)
                      ++|.+++ +|. +..  +|++|++++|.+++ +|.   .+++|++|++++|.+++ +|.   .+++|++|++++|.++++
T Consensus       108 s~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~l  175 (571)
T 3cvr_A          108 CDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFL  175 (571)
T ss_dssp             CSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC
T ss_pred             cCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCc
Confidence            9999996 777 665  99999999999995 676   68999999999999995 665   578999999999999996


Q ss_pred             CcccCCCCCCcEEEeecCcCcccCchHHhhCCCcc-------ceeeccccccccccchhhhcCCCCCEEEcccCcCcccc
Q 048551          204 FLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNL-------RKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKS  276 (409)
Q Consensus       204 ~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L-------~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  276 (409)
                      +. +.  ++|+.|++++|.++ .+|. +. .  +|       +.|++++|.++ .+|..+..+++|+.|++++|++++..
T Consensus       176 p~-l~--~~L~~L~Ls~N~L~-~lp~-~~-~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~  246 (571)
T 3cvr_A          176 PE-LP--ESLEALDVSTNLLE-SLPA-VP-V--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRI  246 (571)
T ss_dssp             CC-CC--TTCCEEECCSSCCS-SCCC-CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred             ch-hh--CCCCEEECcCCCCC-chhh-HH-H--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcC
Confidence            55 54  89999999999999 8887 54 2  67       99999999999 67888888999999999999998755

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.87  E-value=1.6e-21  Score=185.42  Aligned_cols=241  Identities=17%  Similarity=0.140  Sum_probs=168.9

Q ss_pred             CEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCC-ccccCCCCCcE-EeCC
Q 048551           95 EKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLP-ASIQNLSSHLE-ADSN  172 (409)
Q Consensus        95 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~-L~l~  172 (409)
                      ++++.++++++ .+|..+  .+++++|++++|+|+...+..|.++++|++|+|++|++.+.+| ..|.+++++++ +.+.
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            67888899998 678766  3688999999999984444568999999999999999866555 45778888765 5566


Q ss_pred             CCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeec-CcCcccCchHHhhCC-Cccceeeccccccc
Q 048551          173 RNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHD-NRLNGNLPPVIGAKL-PNLRKIVIALNNFT  249 (409)
Q Consensus       173 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~-n~l~~~~p~~~~~~l-~~L~~L~L~~n~l~  249 (409)
                      .|++.+..|..|.++++|++|++++|.+....+ .+....++..+++.+ +.+. .++...+..+ ..++.|++++|+++
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhcccccccc
Confidence            788887778888899999999999999888766 566667788888876 4555 5555433244 35778888888887


Q ss_pred             cccchhhhcCCCCCEEEccc-CcCccccchhhhhcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCCC
Q 048551          250 GPLPDSFSNASNRERLELSY-NQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIE  328 (409)
Q Consensus       250 ~~~p~~l~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~  328 (409)
                      . +|.......+|+++++++ |.++                               .+|...          |.++++|+
T Consensus       168 ~-i~~~~f~~~~L~~l~l~~~n~l~-------------------------------~i~~~~----------f~~l~~L~  205 (350)
T 4ay9_X          168 E-IHNSAFNGTQLDELNLSDNNNLE-------------------------------ELPNDV----------FHGASGPV  205 (350)
T ss_dssp             E-ECTTSSTTEEEEEEECTTCTTCC-------------------------------CCCTTT----------TTTEECCS
T ss_pred             C-CChhhccccchhHHhhccCCccc-------------------------------CCCHHH----------hccCcccc
Confidence            4 444444456677777764 4444                               455432          34456677


Q ss_pred             EEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCCCCCCCCCeecccCCCCce
Q 048551          329 ELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTKGVFNNKTRISLAGNGKLC  385 (409)
Q Consensus       329 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~~~~~~L~~L~l~~Np~l~  385 (409)
                      +||+++|+|+. +|..  .+.+|+.|.+ +++-...+|....+++|+.+++.++ ..|
T Consensus       206 ~LdLs~N~l~~-lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~-~~c  259 (350)
T 4ay9_X          206 ILDISRTRIHS-LPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYP-SHC  259 (350)
T ss_dssp             EEECTTSCCCC-CCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCH-HHH
T ss_pred             hhhcCCCCcCc-cChh--hhccchHhhhccCCCcCcCCCchhCcChhhCcCCCC-ccc
Confidence            78888887773 4432  2455666666 5555556666566777777777543 444

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.87  E-value=3.6e-23  Score=210.49  Aligned_cols=315  Identities=12%  Similarity=0.044  Sum_probs=192.9

Q ss_pred             ecCCCcEEEecCCCCccccCcccc-CCCCCCEEEccCC-ccccc-CCccccCCCCCcEEEcCCCcCCccCCccc----CC
Q 048551           66 TCASLRFINIADNGVQGEIPNELG-NLVRLEKLILANN-SFSGT-IPTNLSLRSKLMLFFANRNILAGEIPAEI----GN  138 (409)
Q Consensus        66 ~c~~l~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~~----~~  138 (409)
                      .|.++++|++++|.+++..+..+. .+++|++|++++| .+++. ++..+..+++|++|++++|.+++..+..+    ..
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            466899999999988876666665 5788999999888 55432 34444578888888888888765443333    35


Q ss_pred             CCCCcEEEeeccc--ccc-cCCccccCCCCCcEEeCCCCCCCCCCCCCCC------------------------------
Q 048551          139 LFKLEKLSFCVIK--LTG-QLPASIQNLSSHLEADSNRNNFGGKIPESPG------------------------------  185 (409)
Q Consensus       139 l~~L~~L~L~~n~--l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~------------------------------  185 (409)
                      +++|++|++++|.  +.. .++..+.++++|++|++++|...+.++..+.                              
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~  262 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS  262 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence            6788888888776  221 1112223457777777776621001111111                              


Q ss_pred             ------------------------CCCCCcEEEccCCcCcccCc--ccCCCCCCcEEEeecCcCcccCchHHhhCCCccc
Q 048551          186 ------------------------QLRSLFYLNVGGNQFSGMFL--PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLR  239 (409)
Q Consensus       186 ------------------------~l~~L~~L~l~~n~l~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~  239 (409)
                                              .+++|++|++++|.+++...  .+..+++|+.|++++| ++......+...+++|+
T Consensus       263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~  341 (594)
T 2p1m_B          263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLR  341 (594)
T ss_dssp             TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCC
T ss_pred             cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCC
Confidence                                    34566666666666543222  2445666777777666 33222223332466677


Q ss_pred             eeecc---------ccccccccchhh-hcCCCCCEEEcccCcCccccchhhh--hcccCcEEecc--c----CCcccccc
Q 048551          240 KIVIA---------LNNFTGPLPDSF-SNASNRERLELSYNQFRGKSIWRSA--ATSYSQRLNDD--D----QNHHGRQQ  301 (409)
Q Consensus       240 ~L~L~---------~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~~~~~~--l~~l~~~L~l~--~----n~l~~~~~  301 (409)
                      +|++.         .+.+++.....+ ..+++|+.|.++.|.+++.....+.  .+++ +.|+++  +    +.+++ .+
T Consensus       342 ~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L-~~L~L~~~~~~~~~~l~~-~~  419 (594)
T 2p1m_B          342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNM-TRFRLCIIEPKAPDYLTL-EP  419 (594)
T ss_dssp             EEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTC-CEEEEEESSTTCCCTTTC-CC
T ss_pred             EEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCc-ceeEeecccCCCcccccC-Cc
Confidence            77662         234443322233 2467777777777777655433322  3444 778887  3    33330 00


Q ss_pred             ccccCChhccCCCCCCccccCC-------------CCCCCEEECcCCccccccchhh-hcCCCCcEEEe-eccceecCCC
Q 048551          302 NICYLPTGISNLVNLDSLATDS-------------LKSIEELDLSSNNLSGQLPRLL-VNLSFLVLLNL-YNHFDGEVPT  366 (409)
Q Consensus       302 ~l~~ip~~~~~l~~L~~L~~~~-------------l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L-~n~l~~~~p~  366 (409)
                      .-..++..+..+++|+.|++++             +++|+.|++++|.+++..+..+ ..+++|++|++ +|.+++....
T Consensus       420 ~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~  499 (594)
T 2p1m_B          420 LDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALL  499 (594)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHH
T ss_pred             hhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHH
Confidence            0001222356778888888654             7889999999999987666555 67999999999 8887543332


Q ss_pred             -C-CCCCCCCeecccCCCC
Q 048551          367 -K-GVFNNKTRISLAGNGK  383 (409)
Q Consensus       367 -~-~~~~~L~~L~l~~Np~  383 (409)
                       . ..+++|+.|++++|+.
T Consensus       500 ~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          500 ANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HTGGGGGGSSEEEEESSCC
T ss_pred             HHHHhCCCCCEEeeeCCCC
Confidence             2 4589999999999965

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.84  E-value=3.2e-20  Score=165.67  Aligned_cols=166  Identities=22%  Similarity=0.203  Sum_probs=141.8

Q ss_pred             CCCCCCCCCCCceeeecCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCc
Q 048551           51 SSLTNSVNLCEWTGVTCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAG  130 (409)
Q Consensus        51 ~~w~~~~~~c~~~g~~c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  130 (409)
                      ..|..+.+.|.|.++.|.        +++++ .+|..+.  ++|++|+|++|.+++..|..|..+++|++|++++|.++.
T Consensus        10 ~~~~~~~~~Cs~~~v~c~--------~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~   78 (229)
T 3e6j_A           10 SAACPSQCSCSGTTVDCR--------SKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA   78 (229)
T ss_dssp             -CCCCTTCEEETTEEECT--------TSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             hccCCCCCEEeCCEeEcc--------CCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC
Confidence            345567789999887774        56666 6776554  889999999999998888899999999999999999985


Q ss_pred             cCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCC
Q 048551          131 EIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYN  209 (409)
Q Consensus       131 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~  209 (409)
                      ..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+ .+..
T Consensus        79 i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  157 (229)
T 3e6j_A           79 LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDR  157 (229)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred             cChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhC
Confidence            55566889999999999999999766667889999999999999998 778888999999999999999998877 6888


Q ss_pred             CCCCcEEEeecCcCcccCc
Q 048551          210 LSSLEMIYLHDNRLNGNLP  228 (409)
Q Consensus       210 l~~L~~L~l~~n~l~~~~p  228 (409)
                      +++|+.|++++|.+....+
T Consensus       158 l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          158 LSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CTTCCEEECTTSCBCTTBG
T ss_pred             CCCCCEEEeeCCCccCCcc
Confidence            9999999999999886543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.84  E-value=2.6e-20  Score=187.00  Aligned_cols=189  Identities=24%  Similarity=0.335  Sum_probs=136.3

Q ss_pred             CCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCC
Q 048551           93 RLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSN  172 (409)
Q Consensus        93 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  172 (409)
                      ++++|++++|.+++ +|..+  +++|++|++++|.++ .+|   ..+++|++|++++|.+++ +|. +.+  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            78888888888885 66655  377888888888888 667   446788888888888885 666 554  78888888


Q ss_pred             CCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeecccccccccc
Q 048551          173 RNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPL  252 (409)
Q Consensus       173 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~  252 (409)
                      +|.+++ +|.   .+++|++|++++|.+++++.   .+++|+.|++++|.++ .+|. +.   ++|+.|++++|.++ .+
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~-~lp~-l~---~~L~~L~Ls~N~L~-~l  195 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLT-FLPE-LP---ESLEALDVSTNLLE-SL  195 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-CCCC-CC---TTCCEEECCSSCCS-SC
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCC-Ccch-hh---CCCCEEECcCCCCC-ch
Confidence            888875 555   56788888888888877443   5677888888888887 4666 32   77888888888877 55


Q ss_pred             chhhhcCCCC-------CEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCC
Q 048551          253 PDSFSNASNR-------ERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLK  325 (409)
Q Consensus       253 p~~l~~l~~L-------~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~  325 (409)
                      |. +..  +|       +.|++++|+++                               .+|..+..           ++
T Consensus       196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-------------------------------~lp~~l~~-----------l~  230 (571)
T 3cvr_A          196 PA-VPV--RNHHSEETEIFFRCRENRIT-------------------------------HIPENILS-----------LD  230 (571)
T ss_dssp             CC-CC----------CCEEEECCSSCCC-------------------------------CCCGGGGG-----------SC
T ss_pred             hh-HHH--hhhcccccceEEecCCCcce-------------------------------ecCHHHhc-----------CC
Confidence            55 433  45       66666666654                               56665543           36


Q ss_pred             CCCEEECcCCccccccchhhhcCCC
Q 048551          326 SIEELDLSSNNLSGQLPRLLVNLSF  350 (409)
Q Consensus       326 ~L~~L~Ls~N~l~~~~p~~~~~l~~  350 (409)
                      +|+.|+|++|++++.+|..+..+..
T Consensus       231 ~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          231 PTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             TTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             CCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            6688888888888888887776543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.84  E-value=1.7e-20  Score=164.94  Aligned_cols=162  Identities=15%  Similarity=0.172  Sum_probs=143.6

Q ss_pred             CCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551           68 ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF  147 (409)
Q Consensus        68 ~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  147 (409)
                      .++++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            38999999999999666667899999999999999999766677899999999999999999666666899999999999


Q ss_pred             ecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccC
Q 048551          148 CVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNL  227 (409)
Q Consensus       148 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~  227 (409)
                      ++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+      .+++|+.|+++.|.++|.+
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------~~~~l~~L~~~~n~~~g~i  181 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------TCPGIRYLSEWINKHSGVV  181 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC------CTTTTHHHHHHHHHCTTTB
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec------CCCCHHHHHHHHHhCCcee
Confidence            9999997666678999999999999999997777778999999999999997764      4678999999999999999


Q ss_pred             chHHhhCCC
Q 048551          228 PPVIGAKLP  236 (409)
Q Consensus       228 p~~~~~~l~  236 (409)
                      |..++ .++
T Consensus       182 p~~~~-~l~  189 (208)
T 2o6s_A          182 RNSAG-SVA  189 (208)
T ss_dssp             BCTTS-SBC
T ss_pred             eccCc-ccc
Confidence            98876 444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.83  E-value=8.4e-20  Score=174.32  Aligned_cols=176  Identities=17%  Similarity=0.106  Sum_probs=147.6

Q ss_pred             CcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCcccc-CCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551           70 LRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLS-LRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC  148 (409)
Q Consensus        70 l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  148 (409)
                      -+.+++++++++ .+|..+.  +.+++|+|++|+|++..+..+. .+++|++|++++|++++..+..|..+++|++|+++
T Consensus        20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            367888899998 6787665  4699999999999977777787 89999999999999997777789999999999999


Q ss_pred             cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-cc---CCCCCCcEEEeecCcCc
Q 048551          149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PV---YNLSSLEMIYLHDNRLN  224 (409)
Q Consensus       149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~---~~l~~L~~L~l~~n~l~  224 (409)
                      +|++++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+++.+. .+   ..+++|+.|++++|.++
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            999997767788999999999999999998888899999999999999999998766 34   56889999999999998


Q ss_pred             ccCchHHhhCCCc--cceeeccccccc
Q 048551          225 GNLPPVIGAKLPN--LRKIVIALNNFT  249 (409)
Q Consensus       225 ~~~p~~~~~~l~~--L~~L~L~~n~l~  249 (409)
                       .+|...+..++.  ++.|++++|.+.
T Consensus       177 -~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          177 -KLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             -CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             -ccCHHHhhhccHhhcceEEecCCCcc
Confidence             566443336666  478888888876

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.83  E-value=4.3e-20  Score=170.96  Aligned_cols=170  Identities=21%  Similarity=0.333  Sum_probs=80.9

Q ss_pred             CCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEe
Q 048551           91 LVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEAD  170 (409)
Q Consensus        91 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  170 (409)
                      +++|++|++++|.+++ ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ ++ .+..+++|++|+
T Consensus        45 l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~  118 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (291)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             cCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence            3344444444444432 11 23444444444444444442 221 4444444444444444442 11 244444455555


Q ss_pred             CCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeecccccccc
Q 048551          171 SNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTG  250 (409)
Q Consensus       171 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~  250 (409)
                      +++|.+++.  ..+..+++|++|++++|.+++. +.+..+++|+.|++++|.++ .+++ +. .+++|+.|++++|.+++
T Consensus       119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~-~~~~-l~-~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQIS-DIVP-LA-GLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCB
T ss_pred             CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccc-cchh-hc-CCCccCEEECCCCcCCC
Confidence            555444422  2344445555555555555443 34455555555566555555 2332 33 55666666666666653


Q ss_pred             ccchhhhcCCCCCEEEcccCcCcc
Q 048551          251 PLPDSFSNASNRERLELSYNQFRG  274 (409)
Q Consensus       251 ~~p~~l~~l~~L~~L~Ls~N~l~~  274 (409)
                       ++ .+..+++|+.|++++|+++.
T Consensus       193 -l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          193 -LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             -CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             -Ch-hhccCCCCCEEECcCCcccC
Confidence             22 25556666666666666554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.82  E-value=1.6e-19  Score=160.10  Aligned_cols=152  Identities=19%  Similarity=0.177  Sum_probs=131.9

Q ss_pred             cEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecc
Q 048551           71 RFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVI  150 (409)
Q Consensus        71 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n  150 (409)
                      +.+++++++++ .+|..+.  +++++|++++|.|++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            45677788888 7777665  78999999999999777778999999999999999999877889999999999999999


Q ss_pred             cccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcc
Q 048551          151 KLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNG  225 (409)
Q Consensus       151 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~  225 (409)
                      .++...+..|.++++|++|++++|.+++..|..|..+++|++|++++|.+++..+ .+..+++|+.|++++|.+..
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            9995555567889999999999999998888889999999999999999988877 67788889999998888764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.82  E-value=2.7e-19  Score=158.66  Aligned_cols=155  Identities=17%  Similarity=0.096  Sum_probs=137.6

Q ss_pred             cEEEecCCCCccccCccccCCCCCCEEEccCCcccccCC-ccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeec
Q 048551           71 RFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIP-TNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCV  149 (409)
Q Consensus        71 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~  149 (409)
                      +.+++++|+++ .+|..+.  +.+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            57888999998 6787664  467999999999997755 4588999999999999999977777899999999999999


Q ss_pred             ccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccCc
Q 048551          150 IKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLP  228 (409)
Q Consensus       150 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~p  228 (409)
                      |.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|.+++..+ .+..+++|+.|++++|.+.+..+
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            99997777789999999999999999998889999999999999999999999877 88889999999999999886544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.82  E-value=1.5e-19  Score=167.29  Aligned_cols=170  Identities=20%  Similarity=0.278  Sum_probs=150.3

Q ss_pred             cCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEE
Q 048551           67 CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS  146 (409)
Q Consensus        67 c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  146 (409)
                      +.++++|++++|.++ .++ .+..+++|++|++++|++++..+  +..+++|++|++++|.+++ +| .+..+++|++|+
T Consensus        45 l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~  118 (291)
T 1h6t_A           45 LNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (291)
T ss_dssp             HHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             cCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence            348999999999998 455 58899999999999999996544  8999999999999999985 44 489999999999


Q ss_pred             eecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCccc
Q 048551          147 FCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGN  226 (409)
Q Consensus       147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~  226 (409)
                      +++|.+++ + +.+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+ +..+++|+.|++++|.++ .
T Consensus       119 L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~-~  192 (291)
T 1h6t_A          119 LEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS-D  192 (291)
T ss_dssp             CTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-B
T ss_pred             CCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCC-C
Confidence            99999985 3 5688999999999999999865  568899999999999999998766 889999999999999998 5


Q ss_pred             CchHHhhCCCccceeecccccccc
Q 048551          227 LPPVIGAKLPNLRKIVIALNNFTG  250 (409)
Q Consensus       227 ~p~~~~~~l~~L~~L~L~~n~l~~  250 (409)
                      ++. +. .+++|+.|++++|.++.
T Consensus       193 l~~-l~-~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          193 LRA-LA-GLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CGG-GT-TCTTCSEEEEEEEEEEC
T ss_pred             Chh-hc-cCCCCCEEECcCCcccC
Confidence            664 55 89999999999999985

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.81  E-value=1.3e-19  Score=172.92  Aligned_cols=178  Identities=17%  Similarity=0.135  Sum_probs=154.8

Q ss_pred             CCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccC-CCCCCcEEEeecccccccCCccccCCCCCcEEeCC
Q 048551           94 LEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIG-NLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSN  172 (409)
Q Consensus        94 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  172 (409)
                      -++++++++.++ .+|..+.  +.+++|++++|.+++..+..+. .+++|++|++++|++++..+..|.++++|++|+++
T Consensus        20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            368999999998 5776553  4689999999999977777777 89999999999999997777889999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccCchHHh---hCCCccceeecccccc
Q 048551          173 RNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLPPVIG---AKLPNLRKIVIALNNF  248 (409)
Q Consensus       173 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~---~~l~~L~~L~L~~n~l  248 (409)
                      +|++.+..+..|.++++|++|++++|.+++..+ .+.++++|+.|++++|.++ .+|..++   ..+++|+.|+|++|++
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCC
Confidence            999998777889999999999999999999877 8899999999999999999 6777664   3689999999999999


Q ss_pred             ccccchhhhcCCC--CCEEEcccCcCccc
Q 048551          249 TGPLPDSFSNASN--RERLELSYNQFRGK  275 (409)
Q Consensus       249 ~~~~p~~l~~l~~--L~~L~Ls~N~l~~~  275 (409)
                      ++..+..+..++.  ++.|++++|++...
T Consensus       176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          176 KKLPLTDLQKLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             CCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred             CccCHHHhhhccHhhcceEEecCCCccCC
Confidence            9766677888876  48899999998743

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.81  E-value=3.1e-19  Score=158.24  Aligned_cols=145  Identities=18%  Similarity=0.187  Sum_probs=131.0

Q ss_pred             CCCCceeeecC-------------CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcC
Q 048551           58 NLCEWTGVTCA-------------SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFAN  124 (409)
Q Consensus        58 ~~c~~~g~~c~-------------~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  124 (409)
                      ..|.|..+.|.             ++++|++++|++++..+..|..+++|++|+|++|.+++..|..|.++++|++|+++
T Consensus         9 C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls   88 (220)
T 2v9t_B            9 CTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY   88 (220)
T ss_dssp             SEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred             CEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence            44566667664             68999999999997777789999999999999999998889999999999999999


Q ss_pred             CCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcc
Q 048551          125 RNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSG  202 (409)
Q Consensus       125 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  202 (409)
                      +|.++...+..|..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+..+..+++|++|++++|.+..
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            999995555568899999999999999998888999999999999999999998888889999999999999998864

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.81  E-value=5.1e-19  Score=157.86  Aligned_cols=155  Identities=15%  Similarity=0.156  Sum_probs=118.9

Q ss_pred             CCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCC
Q 048551           94 LEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNR  173 (409)
Q Consensus        94 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~  173 (409)
                      -+.++.+++.++ .+|..+.  ++|++|++++|.+++..|..|..+++|++|++++|.++...+..|..+++|++|++++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            467888888877 5665543  7888888888888877777788888888888888888755455677888888888888


Q ss_pred             CCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeecccccccccc
Q 048551          174 NNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPL  252 (409)
Q Consensus       174 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~  252 (409)
                      |.+++..+..|..+++|++|++++|.++.++..+..+++|+.|++++|.++ .++...+..+++|+.|++++|.+....
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            888866666678888888888888888866557778888888888888887 555443337788888888888877543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.81  E-value=2.7e-21  Score=196.55  Aligned_cols=308  Identities=9%  Similarity=0.042  Sum_probs=179.6

Q ss_pred             cCCCcEEEecCCCCccc---cC------------ccccCCCCCCEEEccCCcccccCCcccc-CCCCCcEEEcCCC-cCC
Q 048551           67 CASLRFINIADNGVQGE---IP------------NELGNLVRLEKLILANNSFSGTIPTNLS-LRSKLMLFFANRN-ILA  129 (409)
Q Consensus        67 c~~l~~L~L~~n~l~~~---~p------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n-~l~  129 (409)
                      +.++++|+++++.....   .|            .....+++|++|++++|.+++..+..+. .+++|++|++++| .++
T Consensus        65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~  144 (594)
T 2p1m_B           65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS  144 (594)
T ss_dssp             CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred             CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence            45899999999763211   12            1134678999999999999877666665 6899999999998 555


Q ss_pred             cc-CCcccCCCCCCcEEEeecccccccCCcccc----CCCCCcEEeCCCCC--CCCC-CCCCCCCCCCCcEEEccCC-cC
Q 048551          130 GE-IPAEIGNLFKLEKLSFCVIKLTGQLPASIQ----NLSSHLEADSNRNN--FGGK-IPESPGQLRSLFYLNVGGN-QF  200 (409)
Q Consensus       130 ~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~----~l~~L~~L~l~~n~--l~~~-~~~~~~~l~~L~~L~l~~n-~l  200 (409)
                      +. ++..+..+++|++|++++|.+++..+..+.    .+++|++|++++|.  +... ++..+..+++|++|++++| .+
T Consensus       145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~  224 (594)
T 2p1m_B          145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL  224 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH
T ss_pred             HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH
Confidence            32 444455799999999999998765544443    66799999999987  2211 1111234689999999988 22


Q ss_pred             cccCcccCCCC------------------------------------------------------CCcEEEeecCcCccc
Q 048551          201 SGMFLPVYNLS------------------------------------------------------SLEMIYLHDNRLNGN  226 (409)
Q Consensus       201 ~~~~~~~~~l~------------------------------------------------------~L~~L~l~~n~l~~~  226 (409)
                      .+....+..++                                                      +|+.|++++|.+++.
T Consensus       225 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~  304 (594)
T 2p1m_B          225 EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSY  304 (594)
T ss_dssp             HHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHH
T ss_pred             HHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHH
Confidence            22111233333                                                      444444444443322


Q ss_pred             CchHHhhCCCccceeeccccccccc-cchhhhcCCCCCEEEcc---------cCcCccccchhhh--hcccCcEEecccC
Q 048551          227 LPPVIGAKLPNLRKIVIALNNFTGP-LPDSFSNASNRERLELS---------YNQFRGKSIWRSA--ATSYSQRLNDDDQ  294 (409)
Q Consensus       227 ~p~~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls---------~N~l~~~~~~~~~--l~~l~~~L~l~~n  294 (409)
                      ....+...+++|++|++++| +++. ++.....+++|++|+++         .+.+++.....+.  .+++ +.|++..|
T Consensus       305 ~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L-~~L~~~~~  382 (594)
T 2p1m_B          305 DLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKL-ESVLYFCR  382 (594)
T ss_dssp             HHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTC-CEEEEEES
T ss_pred             HHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhH-HHHHHhcC
Confidence            22222223444444444444 2211 11112234445555442         1233322211111  2233 45555555


Q ss_pred             CccccccccccCChhcc-CCCCCCccccC------------------------CCCCCCEEECcCCccccccchhhhc-C
Q 048551          295 NHHGRQQNICYLPTGIS-NLVNLDSLATD------------------------SLKSIEELDLSSNNLSGQLPRLLVN-L  348 (409)
Q Consensus       295 ~l~~~~~~l~~ip~~~~-~l~~L~~L~~~------------------------~l~~L~~L~Ls~N~l~~~~p~~~~~-l  348 (409)
                      .+++      .....+. .+++|+.|++.                        .+++|+.|++++ .+++..+..+.. +
T Consensus       383 ~l~~------~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~  455 (594)
T 2p1m_B          383 QMTN------AALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYA  455 (594)
T ss_dssp             CCCH------HHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHC
T ss_pred             CcCH------HHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhc
Confidence            5441      1111221 34555555543                        356788888877 677665556655 8


Q ss_pred             CCCcEEEe-eccceecCCCC--CCCCCCCeecccCCCC
Q 048551          349 SFLVLLNL-YNHFDGEVPTK--GVFNNKTRISLAGNGK  383 (409)
Q Consensus       349 ~~L~~L~L-~n~l~~~~p~~--~~~~~L~~L~l~~Np~  383 (409)
                      ++|++|++ +|.+++..+..  ..+++|+.|++++|+.
T Consensus       456 ~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~  493 (594)
T 2p1m_B          456 KKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF  493 (594)
T ss_dssp             TTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred             hhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence            88999999 77775543321  3578999999999964

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.80  E-value=1.4e-19  Score=183.46  Aligned_cols=173  Identities=21%  Similarity=0.314  Sum_probs=93.8

Q ss_pred             cCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcE
Q 048551           89 GNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLE  168 (409)
Q Consensus        89 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  168 (409)
                      ..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+++..|  +..+++|++|+|++|.+++ +| .+..+++|+.
T Consensus        40 ~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~  113 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKS  113 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCE
T ss_pred             hcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCE
Confidence            344455555555555542 22 34555555555555555553222  5555555555555555542 22 4555555555


Q ss_pred             EeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeecccccc
Q 048551          169 ADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNF  248 (409)
Q Consensus       169 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l  248 (409)
                      |++++|.+.+.  ..+..+++|+.|++++|.+++. +.+..+++|+.|++++|.+++..|  +. .+++|+.|+|++|.+
T Consensus       114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~-~l~~L~~L~Ls~N~i  187 (605)
T 1m9s_A          114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LA-GLTKLQNLYLSKNHI  187 (605)
T ss_dssp             EECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GT-TCTTCCEEECCSSCC
T ss_pred             EEecCCCCCCC--ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hc-cCCCCCEEECcCCCC
Confidence            55555555532  2345555666666666655554 445556666666666666663323  33 566666666666666


Q ss_pred             ccccchhhhcCCCCCEEEcccCcCccc
Q 048551          249 TGPLPDSFSNASNRERLELSYNQFRGK  275 (409)
Q Consensus       249 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~  275 (409)
                      ++.  ..+..+++|+.|+|++|++.+.
T Consensus       188 ~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          188 SDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             CCC--hHHccCCCCCEEEccCCcCcCC
Confidence            642  2456666666666666666554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.80  E-value=1e-20  Score=196.28  Aligned_cols=231  Identities=19%  Similarity=0.145  Sum_probs=133.0

Q ss_pred             CHHHHHHHHHHHHhCC-CCCCCCCCCCC-CCCCCCceeeecC--CCcEEEecCCCCccccCccccCCCCCCEEE-----c
Q 048551           29 NETDRLALLAIKSQLH-DPLEVTSSLTN-SVNLCEWTGVTCA--SLRFINIADNGVQGEIPNELGNLVRLEKLI-----L   99 (409)
Q Consensus        29 ~~~~~~~l~~~~~~~~-~~~~~~~~w~~-~~~~c~~~g~~c~--~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~-----L   99 (409)
                      .+.+++++.++..+.. ..+.....|.. ....+.|.+..++  +++.|+|.+|.+.. .+..+.....|+.+.     +
T Consensus       130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~  208 (727)
T 4b8c_D          130 VDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVSTPLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDD  208 (727)
T ss_dssp             --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred             cccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecCCccceEEeeCCCCCc-chhhHhhcCccCcccccCccc
Confidence            4567788888887762 22223334533 3456678877665  68899999999884 444433333333322     2


Q ss_pred             cCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCC
Q 048551          100 ANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGK  179 (409)
Q Consensus       100 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~  179 (409)
                      ..|.+. ..+..+..++.|+.|++++|.+. .+|..+..+++|++|+|++|.++ .+|..|+++++|++|+|++|.++ .
T Consensus       209 ~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~  284 (727)
T 4b8c_D          209 IENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-S  284 (727)
T ss_dssp             --------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-S
T ss_pred             ccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-c
Confidence            333333 45777889999999999999998 78888889999999999999999 88999999999999999999999 7


Q ss_pred             CCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcC
Q 048551          180 IPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNA  259 (409)
Q Consensus       180 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  259 (409)
                      +|..++.+++|++|+|++|.++.++..++++++|+.|++++|.+++.+|..+...-.....+++++|.+++.+|..    
T Consensus       285 lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~----  360 (727)
T 4b8c_D          285 LPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE----  360 (727)
T ss_dssp             CCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----
T ss_pred             cChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc----
Confidence            7999999999999999999998765589999999999999999998888777521122335789999999877754    


Q ss_pred             CCCCEEEcccC
Q 048551          260 SNRERLELSYN  270 (409)
Q Consensus       260 ~~L~~L~Ls~N  270 (409)
                        |+.|+++.|
T Consensus       361 --l~~l~l~~n  369 (727)
T 4b8c_D          361 --RRFIEINTD  369 (727)
T ss_dssp             -----------
T ss_pred             --cceeEeecc
Confidence              455666666

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.80  E-value=5e-19  Score=156.90  Aligned_cols=147  Identities=21%  Similarity=0.136  Sum_probs=131.8

Q ss_pred             CCCCceeeecC-------------CCcEEEecCCCCccccC-ccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEc
Q 048551           58 NLCEWTGVTCA-------------SLRFINIADNGVQGEIP-NELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFA  123 (409)
Q Consensus        58 ~~c~~~g~~c~-------------~l~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  123 (409)
                      ..|.|..+.|+             .+++|++++|++++..+ ..|..+++|++|++++|.+++..+..|.++++|++|++
T Consensus         9 C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   88 (220)
T 2v70_A            9 CRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL   88 (220)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence            34566666664             57899999999997655 45899999999999999999888889999999999999


Q ss_pred             CCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCccc
Q 048551          124 NRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGM  203 (409)
Q Consensus       124 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  203 (409)
                      ++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|..+++|++|++++|.+...
T Consensus        89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A           89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            99999977777899999999999999999988899999999999999999999988899999999999999999998764


Q ss_pred             C
Q 048551          204 F  204 (409)
Q Consensus       204 ~  204 (409)
                      .
T Consensus       169 c  169 (220)
T 2v70_A          169 C  169 (220)
T ss_dssp             G
T ss_pred             C
Confidence            3

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.79  E-value=4e-19  Score=180.11  Aligned_cols=170  Identities=20%  Similarity=0.283  Sum_probs=150.5

Q ss_pred             CCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551           68 ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF  147 (409)
Q Consensus        68 ~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  147 (409)
                      .+|+.|++++|.+. .++ .+..+++|+.|+|++|.+++..+  +..+++|++|++++|.+++ +| .+..+++|++|++
T Consensus        43 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~L  116 (605)
T 1m9s_A           43 NSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSL  116 (605)
T ss_dssp             TTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEe
Confidence            38999999999998 555 68999999999999999996554  8999999999999999984 44 6899999999999


Q ss_pred             ecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccC
Q 048551          148 CVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNL  227 (409)
Q Consensus       148 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~  227 (409)
                      ++|.+++ + +.+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.++ .+
T Consensus       117 s~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~-~l  190 (605)
T 1m9s_A          117 EHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS-DL  190 (605)
T ss_dssp             TTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-BC
T ss_pred             cCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCC-CC
Confidence            9999985 3 4689999999999999999865  568899999999999999998776 889999999999999998 45


Q ss_pred             chHHhhCCCccceeeccccccccc
Q 048551          228 PPVIGAKLPNLRKIVIALNNFTGP  251 (409)
Q Consensus       228 p~~~~~~l~~L~~L~L~~n~l~~~  251 (409)
                      + .+. .+++|+.|+|++|.+++.
T Consensus       191 ~-~l~-~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          191 R-ALA-GLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             G-GGT-TCTTCSEEECCSEEEECC
T ss_pred             h-HHc-cCCCCCEEEccCCcCcCC
Confidence            4 455 899999999999999854

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.78  E-value=1e-18  Score=152.14  Aligned_cols=151  Identities=16%  Similarity=0.150  Sum_probs=106.1

Q ss_pred             cCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEE
Q 048551           67 CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS  146 (409)
Q Consensus        67 c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  146 (409)
                      +.++++|++++|+++ .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|.+++..+..++.+++|++|+
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            347888888888887 556 5777888888888888665  234577778888888888888766677777778888888


Q ss_pred             eecccccccCCccccCCCCCcEEeCCCCC-CCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCc
Q 048551          147 FCVIKLTGQLPASIQNLSSHLEADSNRNN-FGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLN  224 (409)
Q Consensus       147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~  224 (409)
                      +++|.+++..|..+..+++|++|++++|. ++ .+| .+..+++|++|++++|.+++.. .+..+++|+.|++++|++.
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence            88888776667777777777777777776 44 344 4666677777777777666543 4556666666666666654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.78  E-value=5.7e-19  Score=153.76  Aligned_cols=152  Identities=15%  Similarity=0.171  Sum_probs=87.5

Q ss_pred             CCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEE
Q 048551          114 LRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYL  193 (409)
Q Consensus       114 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  193 (409)
                      .+++|++|++++|.++ .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus        42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            3444444444444444 333 3444555555555555443  12345555555555555555555455556666666666


Q ss_pred             EccCCcCcccCc-ccCCCCCCcEEEeecCc-CcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCc
Q 048551          194 NVGGNQFSGMFL-PVYNLSSLEMIYLHDNR-LNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQ  271 (409)
Q Consensus       194 ~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~-l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~  271 (409)
                      ++++|.+++..+ .+..+++|++|++++|. ++ .+| .+. .+++|++|++++|.+++ ++ .+..+++|++|++++|+
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~-~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLK-TLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGG-GCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhc-CCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence            666666665444 56666777777777776 44 555 344 67777777777777774 33 56777778888888877


Q ss_pred             Ccc
Q 048551          272 FRG  274 (409)
Q Consensus       272 l~~  274 (409)
                      +.+
T Consensus       193 i~~  195 (197)
T 4ezg_A          193 IGG  195 (197)
T ss_dssp             ---
T ss_pred             cCC
Confidence            754

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.77  E-value=5.7e-19  Score=160.93  Aligned_cols=169  Identities=15%  Similarity=0.233  Sum_probs=97.8

Q ss_pred             CCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeC
Q 048551           92 VRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADS  171 (409)
Q Consensus        92 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l  171 (409)
                      .+++.++++++.+++..  .+..+++|++|++++|.++ .++ .++.+++|++|++++|++++. +. +.++++|++|++
T Consensus        19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L   92 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEEC
T ss_pred             HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEEC
Confidence            33444455555554222  3445555555555555555 333 355555555555555555532 22 555566666666


Q ss_pred             CCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccc
Q 048551          172 NRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGP  251 (409)
Q Consensus       172 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~  251 (409)
                      ++|++++ +|.. .. ++|++|++++|.+++. +.+..+++|+.|++++|+++ .++ .+. .+++|+.|++++|++++.
T Consensus        93 ~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~Ls~N~i~-~~~-~l~-~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A           93 NRNRLKN-LNGI-PS-ACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLK-SIV-MLG-FLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             CSSCCSC-CTTC-CC-SSCCEEECCSSCCSBS-GGGTTCTTCCEEECTTSCCC-BCG-GGG-GCTTCCEEECTTSCCCBC
T ss_pred             CCCccCC-cCcc-cc-CcccEEEccCCccCCC-hhhcCcccccEEECCCCcCC-CCh-HHc-cCCCCCEEECCCCcCcch
Confidence            6666553 2221 22 6666666666666653 34666677777777777776 344 344 667777777777777754


Q ss_pred             cchhhhcCCCCCEEEcccCcCccc
Q 048551          252 LPDSFSNASNRERLELSYNQFRGK  275 (409)
Q Consensus       252 ~p~~l~~l~~L~~L~Ls~N~l~~~  275 (409)
                        ..+..+++|+.|++++|++++.
T Consensus       166 --~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          166 --GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             --TTSTTCCCCCEEEEEEEEEECC
T ss_pred             --HHhccCCCCCEEeCCCCcccCC
Confidence              4567777777777777777654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.75  E-value=1.2e-18  Score=158.70  Aligned_cols=168  Identities=18%  Similarity=0.230  Sum_probs=112.2

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC  148 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  148 (409)
                      +++.++++++.+++ ++ .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+++ ++. +..+++|++|+++
T Consensus        20 ~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~   93 (263)
T 1xeu_A           20 NAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECC
T ss_pred             HHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECC
Confidence            34455666666663 33 4666777777777777776 344 56677777777777777774 333 7777777777777


Q ss_pred             cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCc
Q 048551          149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLP  228 (409)
Q Consensus       149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p  228 (409)
                      +|++++ +|. +.. ++|++|++++|.+++. + .+..+++|++|++++|.+++. +.+..+++|+.|++++|.+++.  
T Consensus        94 ~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N~i~~~--  165 (263)
T 1xeu_A           94 RNRLKN-LNG-IPS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNT--  165 (263)
T ss_dssp             SSCCSC-CTT-CCC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTSCCCBC--
T ss_pred             CCccCC-cCc-ccc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-hHHccCCCCCEEECCCCcCcch--
Confidence            777763 343 222 6777777777777643 2 466777777777777777765 3566777777777777777743  


Q ss_pred             hHHhhCCCccceeeccccccccc
Q 048551          229 PVIGAKLPNLRKIVIALNNFTGP  251 (409)
Q Consensus       229 ~~~~~~l~~L~~L~L~~n~l~~~  251 (409)
                      ..+. .+++|+.|++++|.+++.
T Consensus       166 ~~l~-~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          166 GGLT-RLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TTST-TCCCCCEEEEEEEEEECC
T ss_pred             HHhc-cCCCCCEEeCCCCcccCC
Confidence            3444 677777888887777644

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.74  E-value=7.8e-18  Score=145.95  Aligned_cols=131  Identities=20%  Similarity=0.241  Sum_probs=110.5

Q ss_pred             cEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCc-cccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeec
Q 048551           71 RFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPT-NLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCV  149 (409)
Q Consensus        71 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~  149 (409)
                      +++++++++++ .+|..+..  ++++|++++|.+++..+. .|..+++|++|++++|.+++..|..|..+++|++|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            67888899997 78876653  899999999999866554 488899999999999999987788899999999999999


Q ss_pred             ccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccC
Q 048551          150 IKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMF  204 (409)
Q Consensus       150 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  204 (409)
                      |++++..+..|.++++|++|++++|++++..|..+..+++|++|++++|.+.+..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence            9998777777888888999999998888888888888888888888888877543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.73  E-value=3.3e-17  Score=141.97  Aligned_cols=132  Identities=24%  Similarity=0.205  Sum_probs=115.0

Q ss_pred             CEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCc-ccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCC
Q 048551           95 EKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPA-EIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNR  173 (409)
Q Consensus        95 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~  173 (409)
                      +++++++|.++ .+|..+..  +|++|++++|.+++..+. .++.+++|++|++++|.+++..|..|.++++|++|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            78999999997 67776543  899999999999865554 488999999999999999988888999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccCch
Q 048551          174 NNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLPP  229 (409)
Q Consensus       174 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~  229 (409)
                      |++++..+..|.++++|++|++++|.+++..+ .+..+++|+.|++++|.+.+..+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  144 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence            99998888889999999999999999998877 788899999999999999876654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.72  E-value=1.2e-20  Score=189.95  Aligned_cols=181  Identities=14%  Similarity=0.132  Sum_probs=143.2

Q ss_pred             cCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCc-------------CCccCCcccCCCCCCcEEE-eecccccc
Q 048551           89 GNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNI-------------LAGEIPAEIGNLFKLEKLS-FCVIKLTG  154 (409)
Q Consensus        89 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------------l~~~~p~~~~~l~~L~~L~-L~~n~l~~  154 (409)
                      ...++|+.|+|++|+++ .+|..++.+++|+.|++++|.             +.+..|..++.+++|+.|+ ++.|.+..
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~  424 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD  424 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence            56788888999999887 788888888889988887764             4556677777788888887 55554331


Q ss_pred             cCCc------cccC--CCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCccc
Q 048551          155 QLPA------SIQN--LSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGN  226 (409)
Q Consensus       155 ~~p~------~l~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~  226 (409)
                       ++.      .+..  ...|+.|++++|.+++ +|. ++.+++|+.|++++|.++.++..++++++|+.|++++|.++ .
T Consensus       425 -L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~  500 (567)
T 1dce_A          425 -LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-N  500 (567)
T ss_dssp             -HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-C
T ss_pred             -hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCC-C
Confidence             111      0111  1258899999999985 665 88899999999999999866558889999999999999998 4


Q ss_pred             CchHHhhCCCccceeecccccccccc-chhhhcCCCCCEEEcccCcCcccc
Q 048551          227 LPPVIGAKLPNLRKIVIALNNFTGPL-PDSFSNASNRERLELSYNQFRGKS  276 (409)
Q Consensus       227 ~p~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~  276 (409)
                      +| .+. .+++|+.|++++|.+++.. |..+..+++|+.|++++|++++.+
T Consensus       501 lp-~l~-~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          501 VD-GVA-NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             CG-GGT-TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             Cc-ccC-CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence            77 666 8899999999999999776 888999999999999999998876

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.72  E-value=3.4e-20  Score=186.80  Aligned_cols=172  Identities=15%  Similarity=0.102  Sum_probs=136.0

Q ss_pred             cCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeeccc-------------ccccCCccccCCCCCcEEe-CCCCC---
Q 048551          113 SLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIK-------------LTGQLPASIQNLSSHLEAD-SNRNN---  175 (409)
Q Consensus       113 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~-------------l~~~~p~~l~~l~~L~~L~-l~~n~---  175 (409)
                      ...+.|+.|++++|.++ .+|..++.+++|+.|++++|.             ..+..|..++.+++|+.|+ ++.|.   
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~  424 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD  424 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence            56788889999999987 788889889999999887664             4556677778888888887 44443   


Q ss_pred             ----------CCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccc
Q 048551          176 ----------FGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIAL  245 (409)
Q Consensus       176 ----------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~  245 (409)
                                +... +.     ..|+.|++++|.+++++ .+..+++|+.|++++|.++ .+|..++ .+++|+.|+|++
T Consensus       425 L~~l~l~~n~i~~l-~~-----~~L~~L~Ls~n~l~~lp-~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~  495 (567)
T 1dce_A          425 LRSKFLLENSVLKM-EY-----ADVRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLR-ALPPALA-ALRCLEVLQASD  495 (567)
T ss_dssp             HHHHHHHHHHHHHH-HH-----TTCSEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCC-CCCGGGG-GCTTCCEEECCS
T ss_pred             hhhhhhhccccccc-Cc-----cCceEEEecCCCCCCCc-CccccccCcEeecCccccc-ccchhhh-cCCCCCEEECCC
Confidence                      2211 11     24888999999998865 4888899999999999998 8888887 889999999999


Q ss_pred             cccccccchhhhcCCCCCEEEcccCcCcccc-chhhh-hcccCcEEecccCCcc
Q 048551          246 NNFTGPLPDSFSNASNRERLELSYNQFRGKS-IWRSA-ATSYSQRLNDDDQNHH  297 (409)
Q Consensus       246 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~-l~~l~~~L~l~~n~l~  297 (409)
                      |.+++ +| .++.+++|+.|++++|++++.. ...+. ++++ +.|++++|.++
T Consensus       496 N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L-~~L~L~~N~l~  546 (567)
T 1dce_A          496 NALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL-VLLNLQGNSLC  546 (567)
T ss_dssp             SCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTC-CEEECTTSGGG
T ss_pred             CCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCC-CEEEecCCcCC
Confidence            99985 56 7888999999999999998874 34444 5666 89999999888

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.71  E-value=3.6e-18  Score=177.13  Aligned_cols=191  Identities=27%  Similarity=0.238  Sum_probs=124.5

Q ss_pred             cEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecc
Q 048551           71 RFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVI  150 (409)
Q Consensus        71 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n  150 (409)
                      ..++++.|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|+.+++|++|+|++|
T Consensus       204 ~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N  280 (727)
T 4b8c_D          204 DEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHN  280 (727)
T ss_dssp             -------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTS
T ss_pred             cCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCC
Confidence            33444444444 55778999999999999999999 78888889999999999999999 89999999999999999999


Q ss_pred             cccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCC-CCcEEEeecCcCcccCc
Q 048551          151 KLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLS-SLEMIYLHDNRLNGNLP  228 (409)
Q Consensus       151 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~-~L~~L~l~~n~l~~~~p  228 (409)
                      .++ .+|..|+++++|++|+|++|.++ .+|..|+.+++|++|+|++|.+++.++ .+.... ....+++++|.+++.+|
T Consensus       281 ~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p  358 (727)
T 4b8c_D          281 RLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP  358 (727)
T ss_dssp             CCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred             cCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence            999 78999999999999999999998 788889999999999999999998877 443332 22347899999998877


Q ss_pred             hHHhhCCCccceeecccc--------ccccccchhhhcCCCCCEEEcccCcCc
Q 048551          229 PVIGAKLPNLRKIVIALN--------NFTGPLPDSFSNASNRERLELSYNQFR  273 (409)
Q Consensus       229 ~~~~~~l~~L~~L~L~~n--------~l~~~~p~~l~~l~~L~~L~Ls~N~l~  273 (409)
                      ..       |+.|+++.|        .+.+..+..+..+..+....+++|-+.
T Consensus       359 ~~-------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          359 HE-------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             CC------------------------------------------------CCC
T ss_pred             cc-------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence            54       445556655        334344444566666777788888775

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.70  E-value=1.9e-16  Score=137.27  Aligned_cols=128  Identities=20%  Similarity=0.249  Sum_probs=98.8

Q ss_pred             cEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecc
Q 048551           71 RFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVI  150 (409)
Q Consensus        71 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n  150 (409)
                      +.+++++++++ .+|..+.  ++|++|++++|.++ .+|..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            56788888888 7776554  57888899888888 67778888888888888888888666667888888888888888


Q ss_pred             cccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcc
Q 048551          151 KLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSG  202 (409)
Q Consensus       151 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  202 (409)
                      .+++..|..|.++++|++|++++|.+++..+..|..+++|++|++++|.+..
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            8886666677777888888888887775555567777777777777776653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.70  E-value=5.4e-17  Score=137.36  Aligned_cols=131  Identities=18%  Similarity=0.105  Sum_probs=71.5

Q ss_pred             CCCCEEEccCCccc-ccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEe
Q 048551           92 VRLEKLILANNSFS-GTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEAD  170 (409)
Q Consensus        92 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  170 (409)
                      ++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            45666666666665 45555555666666666666666533  4455666666666666666654555555566666666


Q ss_pred             CCCCCCCCCC-CCCCCCCCCCcEEEccCCcCcccCc----ccCCCCCCcEEEeecCcCc
Q 048551          171 SNRNNFGGKI-PESPGQLRSLFYLNVGGNQFSGMFL----PVYNLSSLEMIYLHDNRLN  224 (409)
Q Consensus       171 l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~l~~L~~L~l~~n~l~  224 (409)
                      +++|.+++.. +..+..+++|++|++++|.+++.++    .+..+++|+.|++++|.+.
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            6666655321 1344455555555555555544433    3344444444444444443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.69  E-value=3.5e-17  Score=138.50  Aligned_cols=135  Identities=19%  Similarity=0.113  Sum_probs=120.3

Q ss_pred             CCcEEEecCCCCc-cccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551           69 SLRFINIADNGVQ-GEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF  147 (409)
Q Consensus        69 ~l~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  147 (409)
                      ++++|++++|+++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|++
T Consensus        25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            8999999999998 78898899999999999999999965  77899999999999999999778888888999999999


Q ss_pred             eccccccc-CCccccCCCCCcEEeCCCCCCCCCCC---CCCCCCCCCcEEEccCCcCcccCc
Q 048551          148 CVIKLTGQ-LPASIQNLSSHLEADSNRNNFGGKIP---ESPGQLRSLFYLNVGGNQFSGMFL  205 (409)
Q Consensus       148 ~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~  205 (409)
                      ++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+...+.
T Consensus       103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A          103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence            99999853 22789999999999999999985544   378899999999999999877543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.67  E-value=7.3e-16  Score=131.56  Aligned_cols=129  Identities=16%  Similarity=0.122  Sum_probs=86.5

Q ss_pred             cEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecc
Q 048551           71 RFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVI  150 (409)
Q Consensus        71 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n  150 (409)
                      +.+++++++++ .+|..+.  ++|++|++++|++++..+..+..+++|++|++++|.+++..+..++.+++|++|++++|
T Consensus        10 ~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            44555677777 5664443  68888888888888666666777888888888888887544455677777777777777


Q ss_pred             cccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcc
Q 048551          151 KLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSG  202 (409)
Q Consensus       151 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  202 (409)
                      .+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            7775544456666667777777666664444445556666666666665554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.67  E-value=4.9e-17  Score=134.78  Aligned_cols=126  Identities=16%  Similarity=0.119  Sum_probs=80.3

Q ss_pred             CCcEEEecCCCCc-cccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551           69 SLRFINIADNGVQ-GEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF  147 (409)
Q Consensus        69 ~l~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  147 (409)
                      ++++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..++.+++|++|++
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            5677777777776 56666667777777777777777644  55666677777777777776556655556666777777


Q ss_pred             eccccccc-CCccccCCCCCcEEeCCCCCCCCCCC---CCCCCCCCCcEEEcc
Q 048551          148 CVIKLTGQ-LPASIQNLSSHLEADSNRNNFGGKIP---ESPGQLRSLFYLNVG  196 (409)
Q Consensus       148 ~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~  196 (409)
                      ++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|++|+++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            66666642 23556666666666666666654433   245555666666554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.65  E-value=1.5e-15  Score=131.50  Aligned_cols=127  Identities=19%  Similarity=0.249  Sum_probs=95.9

Q ss_pred             CEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCC
Q 048551           95 EKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRN  174 (409)
Q Consensus        95 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n  174 (409)
                      +++++++|.++ .+|..+.  ++|++|++++|.++ .+|..|..+++|++|++++|.+++..+..|.++++|++|++++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            57888888887 5665543  57888888888887 67777777888888888888887666667778888888888888


Q ss_pred             CCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcc
Q 048551          175 NFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNG  225 (409)
Q Consensus       175 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~  225 (409)
                      .+++..+..|.++++|++|++++|.++..++ .+..+++|+.|++++|.+..
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            8877766777777888888888887777666 56677777777777777653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.65  E-value=5.7e-16  Score=145.78  Aligned_cols=121  Identities=13%  Similarity=0.189  Sum_probs=76.3

Q ss_pred             CCcEEEecCCCCccccCccccC-CCCCCEEEccCCccc--ccCCccccCCCCCcEEEcCCCcCCccCCcccCC-------
Q 048551           69 SLRFINIADNGVQGEIPNELGN-LVRLEKLILANNSFS--GTIPTNLSLRSKLMLFFANRNILAGEIPAEIGN-------  138 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~-------  138 (409)
                      +++.|.++++ +.+.--..+.. +++|++|||++|++.  ...+..+   +.++.+.+..|.+.   +..|.+       
T Consensus        26 ~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I~---~~aF~~~~~~~~~   98 (329)
T 3sb4_A           26 SITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFVP---AYAFSNVVNGVTK   98 (329)
T ss_dssp             HCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEEC---TTTTEEEETTEEE
T ss_pred             ceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccc---cccccccccccccC---HHHhccccccccc
Confidence            5777887764 22111112333 778999999999887  2222222   22444555555322   234555       


Q ss_pred             -CCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccC
Q 048551          139 -LFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGG  197 (409)
Q Consensus       139 -l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  197 (409)
                       +++|+.+++.+ .++...+..|.++++|+.+++.+|.+....+..|.++.++.++..+.
T Consensus        99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~  157 (329)
T 3sb4_A           99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS  157 (329)
T ss_dssp             ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred             ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence             88888888887 77755566788888888888888887766677777777777666655

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.65  E-value=1.4e-16  Score=131.89  Aligned_cols=110  Identities=17%  Similarity=0.169  Sum_probs=71.6

Q ss_pred             CCCCEEEccCCccc-ccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEe
Q 048551           92 VRLEKLILANNSFS-GTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEAD  170 (409)
Q Consensus        92 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  170 (409)
                      ++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..++.+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            56777788877777 56777777777777777777777743  5566777777777777777755666666666676776


Q ss_pred             CCCCCCCCC-CCCCCCCCCCCcEEEccCCcCccc
Q 048551          171 SNRNNFGGK-IPESPGQLRSLFYLNVGGNQFSGM  203 (409)
Q Consensus       171 l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~  203 (409)
                      +++|.+++. .+..+..+++|++|++++|.+++.
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~  128 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL  128 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGS
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccch
Confidence            666666542 224445555555555555555443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.63  E-value=3.7e-15  Score=127.12  Aligned_cols=132  Identities=19%  Similarity=0.168  Sum_probs=96.3

Q ss_pred             CCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCC
Q 048551           94 LEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNR  173 (409)
Q Consensus        94 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~  173 (409)
                      .+.+++++++++ .+|..+  .++|++|++++|.+++..+..++.+++|++|++++|.+++..+..+..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            467888888887 455433  36788888888888755555677788888888888888755555667788888888888


Q ss_pred             CCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccCc
Q 048551          174 NNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLP  228 (409)
Q Consensus       174 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~p  228 (409)
                      |.+++..+..+..+++|++|++++|.+++.++ .+..+++|+.|++++|.+.+..|
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            88876666667777888888888887776665 45667777777777777775443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.60  E-value=4e-15  Score=139.97  Aligned_cols=195  Identities=13%  Similarity=0.083  Sum_probs=113.6

Q ss_pred             CCCcEEEecCCCCc--------------------cccCccccC--------CCCCCEEEccCCcccccCCccccCCCCCc
Q 048551           68 ASLRFINIADNGVQ--------------------GEIPNELGN--------LVRLEKLILANNSFSGTIPTNLSLRSKLM  119 (409)
Q Consensus        68 ~~l~~L~L~~n~l~--------------------~~~p~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  119 (409)
                      .+|++|||++|++.                    ...+..|.+        +++|+.++|.+ .++...+.+|.++++|+
T Consensus        49 ~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~  127 (329)
T 3sb4_A           49 PSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLK  127 (329)
T ss_dssp             TTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCC
T ss_pred             ccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccc
Confidence            47899999998887                    112234555        77777777777 66655556677777777


Q ss_pred             EEEcCCCcCCccCCcccCCCCCCcEEEeecccc----cccCCcccc----------------------------------
Q 048551          120 LFFANRNILAGEIPAEIGNLFKLEKLSFCVIKL----TGQLPASIQ----------------------------------  161 (409)
Q Consensus       120 ~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l----~~~~p~~l~----------------------------------  161 (409)
                      .+++.+|.++...+..|..+.++.++....+..    .......|.                                  
T Consensus       128 ~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l  207 (329)
T 3sb4_A          128 ICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFL  207 (329)
T ss_dssp             EEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEE
T ss_pred             eEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceE
Confidence            777777777645555566666555554433111    000000111                                  


Q ss_pred             ----------------CCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCc-EEEeecCcC
Q 048551          162 ----------------NLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLE-MIYLHDNRL  223 (409)
Q Consensus       162 ----------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~-~L~l~~n~l  223 (409)
                                      .+++|+.+++++|.++...+..|.++.+|+.+++.+| ++.+.+ .|.++.+|+ .+++.+ .+
T Consensus       208 ~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l  285 (329)
T 3sb4_A          208 TIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SV  285 (329)
T ss_dssp             EEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TC
T ss_pred             EEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cc
Confidence                            1456666666666666444555666666666666665 554444 566666666 666665 44


Q ss_pred             cccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEE
Q 048551          224 NGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLE  266 (409)
Q Consensus       224 ~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  266 (409)
                      + .++...|..+++|+.++++.|.++...+..|.++++|+.++
T Consensus       286 ~-~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          286 T-AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             C-EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             e-EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            4 44444444566666666666666655555666666666654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.58  E-value=2.1e-15  Score=128.63  Aligned_cols=132  Identities=17%  Similarity=0.130  Sum_probs=71.5

Q ss_pred             ccCCCCCCEEEccCCcccccCCccccCCC-CCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCC
Q 048551           88 LGNLVRLEKLILANNSFSGTIPTNLSLRS-KLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSH  166 (409)
Q Consensus        88 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  166 (409)
                      +.++++|++|++++|.++ .++. +..+. +|++|++++|.+++.  ..++.+++|++|++++|.+++..+..+..+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            344455555555555555 2332 22222 555555555555532  345555566666666666553322333556666


Q ss_pred             cEEeCCCCCCCCCCCC--CCCCCCCCcEEEccCCcCcccCcc----cCCCCCCcEEEeecCcCc
Q 048551          167 LEADSNRNNFGGKIPE--SPGQLRSLFYLNVGGNQFSGMFLP----VYNLSSLEMIYLHDNRLN  224 (409)
Q Consensus       167 ~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~----~~~l~~L~~L~l~~n~l~  224 (409)
                      ++|++++|.+. .+|.  .+..+++|++|++++|.+...+..    +..+++|+.|++++|...
T Consensus        91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            66666666654 3333  455566666666666666554332    556667777777766654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.57  E-value=3.1e-13  Score=130.23  Aligned_cols=173  Identities=11%  Similarity=0.055  Sum_probs=113.6

Q ss_pred             CCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEE
Q 048551           90 NLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEA  169 (409)
Q Consensus        90 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  169 (409)
                      .+..++.+.+.++ ++..-..+|.+. +|+.+.+..+ ++..-..+|.+ .+|+.+.+.. .++...+..|.++++|+.+
T Consensus       111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred             ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCee
Confidence            3456777777653 443445566664 6777777665 55344455666 3677777765 5554555677778888888


Q ss_pred             eCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeecccccc
Q 048551          170 DSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNF  248 (409)
Q Consensus       170 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l  248 (409)
                      ++.+|.++......|. ..+|+.+.+..+ ++.+.. .|.++++|+.+++..+ ++ .++...+.. .+|+.+.+. +.+
T Consensus       186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp-~~i  259 (401)
T 4fdw_A          186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLP-NGV  259 (401)
T ss_dssp             ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEE-TTC
T ss_pred             ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeC-CCc
Confidence            8887777755455555 477888887744 555555 6777778888888764 44 556555533 678888773 445


Q ss_pred             ccccchhhhcCCCCCEEEcccCcCc
Q 048551          249 TGPLPDSFSNASNRERLELSYNQFR  273 (409)
Q Consensus       249 ~~~~p~~l~~l~~L~~L~Ls~N~l~  273 (409)
                      +......|.+|++|+.+++.+|.+.
T Consensus       260 ~~I~~~aF~~c~~L~~l~l~~~~~~  284 (401)
T 4fdw_A          260 TNIASRAFYYCPELAEVTTYGSTFN  284 (401)
T ss_dssp             CEECTTTTTTCTTCCEEEEESSCCC
T ss_pred             cEEChhHhhCCCCCCEEEeCCcccc
Confidence            5455667788888888888776654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.56  E-value=7.3e-15  Score=125.22  Aligned_cols=130  Identities=18%  Similarity=0.133  Sum_probs=76.4

Q ss_pred             CCCCCcEEEeecccccccCCccccCCC-CCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcE
Q 048551          138 NLFKLEKLSFCVIKLTGQLPASIQNLS-SHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEM  215 (409)
Q Consensus       138 ~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~  215 (409)
                      .+.+|++|++++|.++ .+|. +..+. +|++|++++|.+++.  ..+..+++|++|++++|.+++.++ .+..+++|+.
T Consensus        17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            3445555555555554 2232 22322 555555555555543  345566666666666666666554 2356666777


Q ss_pred             EEeecCcCcccCch--HHhhCCCccceeeccccccccccch----hhhcCCCCCEEEcccCcCcc
Q 048551          216 IYLHDNRLNGNLPP--VIGAKLPNLRKIVIALNNFTGPLPD----SFSNASNRERLELSYNQFRG  274 (409)
Q Consensus       216 L~l~~n~l~~~~p~--~~~~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~Ls~N~l~~  274 (409)
                      |++++|.++ .+|.  .+. .+++|+.|++++|.++ .+|.    .+..+++|+.|++++|....
T Consensus        93 L~L~~N~i~-~~~~~~~l~-~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           93 LILTNNSLV-ELGDLDPLA-SLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             EECCSCCCC-CGGGGGGGG-GCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             EECCCCcCC-cchhhHhhh-cCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            777777665 5554  444 6677777777777776 3444    36777777777777776543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.54  E-value=3.9e-17  Score=142.20  Aligned_cols=154  Identities=16%  Similarity=0.174  Sum_probs=82.6

Q ss_pred             cCCCCCCEEEccCCcccccCCc------cccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccC
Q 048551           89 GNLVRLEKLILANNSFSGTIPT------NLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQN  162 (409)
Q Consensus        89 ~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~  162 (409)
                      .....++.++++.+.+++..|.      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..
T Consensus        15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~   91 (198)
T 1ds9_A           15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV   91 (198)
T ss_dssp             HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred             HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence            3344555555666655555443      44455555555555555542 33 4444455555555555444 33433333


Q ss_pred             CCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCch--HHhhCCCccce
Q 048551          163 LSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPP--VIGAKLPNLRK  240 (409)
Q Consensus       163 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~--~~~~~l~~L~~  240 (409)
                                              +++|++|++++|.+++.+ .+..+++|+.|++++|.++ .++.  .+. .+++|++
T Consensus        92 ------------------------~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~-~~~~~~~l~-~l~~L~~  144 (198)
T 1ds9_A           92 ------------------------ADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKIT-NWGEIDKLA-ALDKLED  144 (198)
T ss_dssp             ------------------------HHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECC-CHHHHHHHT-TTTTCSE
T ss_pred             ------------------------CCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCC-chhHHHHHh-cCCCCCE
Confidence                                    344555555555554432 3445566666666666665 3332  343 5667777


Q ss_pred             eeccccccccccch----------hhhcCCCCCEEEcccCcCcc
Q 048551          241 IVIALNNFTGPLPD----------SFSNASNRERLELSYNQFRG  274 (409)
Q Consensus       241 L~L~~n~l~~~~p~----------~l~~l~~L~~L~Ls~N~l~~  274 (409)
                      |++++|.+++..|.          .+..+++|+.||  +|.++.
T Consensus       145 L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          145 LLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             EEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             EEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            77777766655443          266777777776  555543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.54  E-value=4.9e-13  Score=128.87  Aligned_cols=259  Identities=13%  Similarity=0.080  Sum_probs=179.9

Q ss_pred             CCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551           68 ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF  147 (409)
Q Consensus        68 ~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  147 (409)
                      ..++.+.+.+ .++..-..+|.+. +|+.+.+..+ ++..-..+|.+. +|+.+.+.. .++..-+..|.++++|+.+++
T Consensus       113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l  187 (401)
T 4fdw_A          113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL  187 (401)
T ss_dssp             SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred             CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence            3666677664 3553445567774 7999999877 665566677774 799999986 666455677999999999999


Q ss_pred             ecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCccc
Q 048551          148 CVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGN  226 (409)
Q Consensus       148 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~  226 (409)
                      ..|.++......|. ..+|+.+.+..+ +.......|.++++|+.+++..+ ++.+.. .|.+ .+|+.+.+. +.++ .
T Consensus       188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~-~  261 (401)
T 4fdw_A          188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT-N  261 (401)
T ss_dssp             TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC-E
T ss_pred             CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc-E
Confidence            99999844444555 689999999854 66666778999999999999875 555555 5666 789999994 4566 6


Q ss_pred             CchHHhhCCCccceeeccccccc-----cccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCcccccc
Q 048551          227 LPPVIGAKLPNLRKIVIALNNFT-----GPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQ  301 (409)
Q Consensus       227 ~p~~~~~~l~~L~~L~L~~n~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~  301 (409)
                      ++...+..+++|+.+++.+|.+.     ...+..|.+|++|+.+++.. .++                            
T Consensus       262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~----------------------------  312 (401)
T 4fdw_A          262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR----------------------------  312 (401)
T ss_dssp             ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC----------------------------
T ss_pred             EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE----------------------------
Confidence            76666668999999999888764     35566789999999998873 343                            


Q ss_pred             ccccCChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-CCC-CCCCeecc
Q 048551          302 NICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-GVF-NNKTRISL  378 (409)
Q Consensus       302 ~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~~~-~~L~~L~l  378 (409)
                         .++...          |.++++|+.+++..| ++.....+|.++ +|+.+++ +|......+.. ..+ .+++.+.+
T Consensus       313 ---~I~~~a----------F~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~v  377 (401)
T 4fdw_A          313 ---ILGQGL----------LGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRV  377 (401)
T ss_dssp             ---EECTTT----------TTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEE
T ss_pred             ---EEhhhh----------hcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEe
Confidence               222211          445566777777544 554556677777 7888888 55554332222 233 24556655


Q ss_pred             cCC
Q 048551          379 AGN  381 (409)
Q Consensus       379 ~~N  381 (409)
                      -.+
T Consensus       378 p~~  380 (401)
T 4fdw_A          378 PAE  380 (401)
T ss_dssp             CGG
T ss_pred             CHH
Confidence            544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.52  E-value=4.2e-17  Score=142.01  Aligned_cols=131  Identities=21%  Similarity=0.208  Sum_probs=106.7

Q ss_pred             CCcEEEecCCCCccccCc------cccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCC
Q 048551           69 SLRFINIADNGVQGEIPN------ELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKL  142 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  142 (409)
                      .++.++++.+.++|.+|.      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L   95 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL   95 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence            566677777777777666      89999999999999999996 67 8999999999999999999 688888888999


Q ss_pred             cEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCC-CCCCCCCCCcEEEccCCcCcccC
Q 048551          143 EKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIP-ESPGQLRSLFYLNVGGNQFSGMF  204 (409)
Q Consensus       143 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~  204 (409)
                      ++|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..
T Consensus        96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~  156 (198)
T 1ds9_A           96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY  156 (198)
T ss_dssp             SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred             CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence            999999999985 45 68888889999999888874322 34566777777777777766543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.52  E-value=7.1e-14  Score=118.37  Aligned_cols=106  Identities=17%  Similarity=0.139  Sum_probs=66.4

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC  148 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  148 (409)
                      ..+++++++|+++ .+|..+.  ++|++|+|++|.|++..|..|.++++|++|++++|++++..+..|..+++|++|+++
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            3467777788887 5665553  677777777777776666667777777777777777664444445566666666666


Q ss_pred             cccccccCCccccCCCCCcEEeCCCCCCC
Q 048551          149 VIKLTGQLPASIQNLSSHLEADSNRNNFG  177 (409)
Q Consensus       149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~  177 (409)
                      +|++++..+..|..+++|++|++++|++.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            66665433334555555555555555544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.49  E-value=2e-13  Score=116.09  Aligned_cols=105  Identities=18%  Similarity=0.201  Sum_probs=66.6

Q ss_pred             CcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeec
Q 048551           70 LRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCV  149 (409)
Q Consensus        70 l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~  149 (409)
                      -+.+++++|+++ .+|..+.  ++|++|+|++|.|++..|..|.++++|++|++++|++++..+..|..+++|++|++++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            467788888886 6776554  6777888877777766666677777777777777777643333455666666666666


Q ss_pred             ccccccCCccccCCCCCcEEeCCCCCCC
Q 048551          150 IKLTGQLPASIQNLSSHLEADSNRNNFG  177 (409)
Q Consensus       150 n~l~~~~p~~l~~l~~L~~L~l~~n~l~  177 (409)
                      |++++..+..|..+++|++|++++|.+.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcc
Confidence            6665333333555555555555555544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.48  E-value=3.5e-13  Score=114.11  Aligned_cols=105  Identities=16%  Similarity=0.178  Sum_probs=56.7

Q ss_pred             CCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCC
Q 048551           94 LEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNR  173 (409)
Q Consensus        94 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~  173 (409)
                      .+++++++|.++ .+|..+  .+.|++|++++|.+++..|..|..+++|++|++++|++++..+..|.++++|++|++++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            456666666666 345443  25556666666666544455555555555555555555543333445555555555555


Q ss_pred             CCCCCCCCCCCCCCCCCcEEEccCCcCc
Q 048551          174 NNFGGKIPESPGQLRSLFYLNVGGNQFS  201 (409)
Q Consensus       174 n~l~~~~~~~~~~l~~L~~L~l~~n~l~  201 (409)
                      |++++..+..|..+++|++|++++|.+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            5555444444555555555555555444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.45  E-value=6.9e-13  Score=112.68  Aligned_cols=105  Identities=19%  Similarity=0.232  Sum_probs=59.3

Q ss_pred             CEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCC
Q 048551           95 EKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRN  174 (409)
Q Consensus        95 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n  174 (409)
                      +.+++++|.++ .+|..+.  +.|++|++++|.+++..|..|+.+++|++|++++|++++..+..|.++++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            56666666665 4555442  56666666666666555555666666666666666665433333455555666666655


Q ss_pred             CCCCCCCCCCCCCCCCcEEEccCCcCcc
Q 048551          175 NFGGKIPESPGQLRSLFYLNVGGNQFSG  202 (409)
Q Consensus       175 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~  202 (409)
                      ++++..+..|..+++|++|++++|.+..
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCccc
Confidence            5554333345555555555555555443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.31  E-value=8e-12  Score=118.12  Aligned_cols=102  Identities=16%  Similarity=0.103  Sum_probs=85.6

Q ss_pred             EEecCC-CCccccCccccCCCCCCEEEccC-CcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecc
Q 048551           73 INIADN-GVQGEIPNELGNLVRLEKLILAN-NSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVI  150 (409)
Q Consensus        73 L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n  150 (409)
                      ++++++ +++ .+|. +..+++|++|+|++ |.|++..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus        13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            345566 788 6888 99999999999996 9999777788999999999999999999888888999999999999999


Q ss_pred             cccccCCccccCCCCCcEEeCCCCCCC
Q 048551          151 KLTGQLPASIQNLSSHLEADSNRNNFG  177 (409)
Q Consensus       151 ~l~~~~p~~l~~l~~L~~L~l~~n~l~  177 (409)
                      ++++..+..+..++ |+.|++.+|.+.
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            99855445555555 899999988876

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.30  E-value=4.8e-14  Score=134.63  Aligned_cols=164  Identities=13%  Similarity=0.045  Sum_probs=75.1

Q ss_pred             CCCCEEEccCCcccccCCcccc-----CCCCCcEEEcCCCcCCccCCccc-CCCCCCcEEEeecccccccCCccc-----
Q 048551           92 VRLEKLILANNSFSGTIPTNLS-----LRSKLMLFFANRNILAGEIPAEI-GNLFKLEKLSFCVIKLTGQLPASI-----  160 (409)
Q Consensus        92 ~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l-----  160 (409)
                      +.|++|++++|.++......+.     ..++|++|++++|.+++.....+ ..+++|++|++++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            3455555555555433222221     12455555555555543222111 123445555555555543222222     


Q ss_pred             cCCCCCcEEeCCCCCCCCC----CCCCCCCCCCCcEEEccCCcCcccC----c-ccCCCCCCcEEEeecCcCccc----C
Q 048551          161 QNLSSHLEADSNRNNFGGK----IPESPGQLRSLFYLNVGGNQFSGMF----L-PVYNLSSLEMIYLHDNRLNGN----L  227 (409)
Q Consensus       161 ~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~----~-~~~~l~~L~~L~l~~n~l~~~----~  227 (409)
                      ...++|++|++++|.++..    ++..+...++|++|++++|.+....    . .+...++|+.|++++|.+++.    +
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            1234555555555555321    1122234455555555555554321    1 334445566666666666532    2


Q ss_pred             chHHhhCCCccceeeccccccccccchhh
Q 048551          228 PPVIGAKLPNLRKIVIALNNFTGPLPDSF  256 (409)
Q Consensus       228 p~~~~~~l~~L~~L~L~~n~l~~~~p~~l  256 (409)
                      +..+. ..++|++|+|++|.+++.....+
T Consensus       232 ~~~L~-~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          232 ARAAR-EHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             HHHHH-HCSSCCEEECTTSSCCHHHHHHH
T ss_pred             HHHHH-hCCCCCEEeccCCCCCHHHHHHH
Confidence            22222 34566666666666654433333

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.27  E-value=2.9e-10  Score=109.42  Aligned_cols=291  Identities=12%  Similarity=-0.015  Sum_probs=147.1

Q ss_pred             cCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEE
Q 048551           67 CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS  146 (409)
Q Consensus        67 c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  146 (409)
                      |.+|+.+.+.. .++..-..+|.++++|+.+++..+ ++..-...|.++..|+.+.+..+ ++.....+|.++..++...
T Consensus        70 c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~  146 (394)
T 4fs7_A           70 CRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITI  146 (394)
T ss_dssp             CTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEEC
T ss_pred             CCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccccccc
Confidence            55777777764 355334456777777777777654 44344456667777766655543 2212223344333222221


Q ss_pred             eecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcc
Q 048551          147 FCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNG  225 (409)
Q Consensus       147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~  225 (409)
                      .  ..........|.++++|+.+.+..+. .......|.++.+|+.+.+..+ ++.... .+.++..|+.+.+..+... 
T Consensus       147 ~--~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-  221 (394)
T 4fs7_A          147 P--EGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-  221 (394)
T ss_dssp             C--TTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-
T ss_pred             C--ccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-
Confidence            1  11121233456666777777775443 2244455666677777766554 333333 5556666666665544322 


Q ss_pred             cCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh-hcccCcEEecccCCccccccccc
Q 048551          226 NLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA-ATSYSQRLNDDDQNHHGRQQNIC  304 (409)
Q Consensus       226 ~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-l~~l~~~L~l~~n~l~~~~~~l~  304 (409)
                       +....+ ...+|+.+.+... ++......+..+..++.+.+..+... .....+. ...+ +.+....+.+.       
T Consensus       222 -i~~~~~-~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l-~~~~~~~~~i~-------  289 (394)
T 4fs7_A          222 -LGDFAL-SKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGL-KKVIYGSVIVP-------  289 (394)
T ss_dssp             -ECTTTT-TTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTC-CEEEECSSEEC-------
T ss_pred             -eehhhc-ccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eecccccccccc-ceeccCceeec-------
Confidence             222222 3345555555432 22222334455555555555443221 1111111 0000 11211111110       


Q ss_pred             cCChhccCCCCCCccc------------cCCCCCCCEEECcCCccccccchhhhcCCCCcEEEeeccceecCCCC--CCC
Q 048551          305 YLPTGISNLVNLDSLA------------TDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYNHFDGEVPTK--GVF  370 (409)
Q Consensus       305 ~ip~~~~~l~~L~~L~------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~n~l~~~~p~~--~~~  370 (409)
                        ...+..+.+|+.+.            |.++.+|+.+++..+ ++.....+|.++.+|+.+++..++. .+...  ..+
T Consensus       290 --~~~F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~l~-~I~~~aF~~C  365 (394)
T 4fs7_A          290 --EKTFYGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLSLR-KIGANAFQGC  365 (394)
T ss_dssp             --TTTTTTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTTCC-EECTTTBTTC
T ss_pred             --cccccccccccccccccccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcccc-EehHHHhhCC
Confidence              00122222222222            677888888888754 6645567888889999999844454 34433  567


Q ss_pred             CCCCeecccCC
Q 048551          371 NNKTRISLAGN  381 (409)
Q Consensus       371 ~~L~~L~l~~N  381 (409)
                      ++|+.+++..+
T Consensus       366 ~~L~~i~lp~~  376 (394)
T 4fs7_A          366 INLKKVELPKR  376 (394)
T ss_dssp             TTCCEEEEEGG
T ss_pred             CCCCEEEECCC
Confidence            88888888655

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.24  E-value=3.3e-13  Score=128.81  Aligned_cols=161  Identities=13%  Similarity=0.127  Sum_probs=109.4

Q ss_pred             CCCCcEEEcCCCcCCccCCccc----C-CCCCCcEEEeecccccccCCccc-cCCCCCcEEeCCCCCCCCCCCCCC----
Q 048551          115 RSKLMLFFANRNILAGEIPAEI----G-NLFKLEKLSFCVIKLTGQLPASI-QNLSSHLEADSNRNNFGGKIPESP----  184 (409)
Q Consensus       115 l~~L~~L~l~~n~l~~~~p~~~----~-~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~l~~n~l~~~~~~~~----  184 (409)
                      ++.|++|++++|.++......+    . ..++|++|++++|.++......+ ..+++|++|++++|.++......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            4678999999999875433332    2 23689999999998875433333 245678899999998874332222    


Q ss_pred             -CCCCCCcEEEccCCcCcccCc-----ccCCCCCCcEEEeecCcCccc----CchHHhhCCCccceeeccccccccc---
Q 048551          185 -GQLRSLFYLNVGGNQFSGMFL-----PVYNLSSLEMIYLHDNRLNGN----LPPVIGAKLPNLRKIVIALNNFTGP---  251 (409)
Q Consensus       185 -~~l~~L~~L~l~~n~l~~~~~-----~~~~l~~L~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~---  251 (409)
                       ...++|++|++++|.++....     .+...++|++|++++|.+++.    ++..+. ..++|++|+|++|.+++.   
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~-~~~~L~~L~Ls~N~i~~~g~~  229 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD-RNRQLQELNVAYNGAGDTAAL  229 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGG-GCSCCCEEECCSSCCCHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh-cCCCcCeEECCCCCCCHHHHH
Confidence             245778888888888865321     345677888888888887642    233344 567788888888888743   


Q ss_pred             -cchhhhcCCCCCEEEcccCcCcccc
Q 048551          252 -LPDSFSNASNRERLELSYNQFRGKS  276 (409)
Q Consensus       252 -~p~~l~~l~~L~~L~Ls~N~l~~~~  276 (409)
                       ++..+..+++|++|+|++|.+++..
T Consensus       230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g  255 (372)
T 3un9_A          230 ALARAAREHPSLELLHLYFNELSSEG  255 (372)
T ss_dssp             HHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred             HHHHHHHhCCCCCEEeccCCCCCHHH
Confidence             3334556678888888888887644

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.24  E-value=3.5e-11  Score=113.69  Aligned_cols=106  Identities=14%  Similarity=0.088  Sum_probs=89.4

Q ss_pred             CEEEccCC-cccccCCccccCCCCCcEEEcCC-CcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCC
Q 048551           95 EKLILANN-SFSGTIPTNLSLRSKLMLFFANR-NILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSN  172 (409)
Q Consensus        95 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  172 (409)
                      ..++++++ .++ .+|. +..+++|++|+|++ |.+++..+..|+.+++|++|+|++|++++..|..|.++++|++|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35688888 888 5787 99999999999996 99997666789999999999999999998888889999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCcEEEccCCcCccc
Q 048551          173 RNNFGGKIPESPGQLRSLFYLNVGGNQFSGM  203 (409)
Q Consensus       173 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  203 (409)
                      +|++++..+..+..++ |++|++.+|.+...
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence            9999866666666655 99999999988643

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.14  E-value=1.4e-09  Score=104.67  Aligned_cols=297  Identities=11%  Similarity=0.016  Sum_probs=193.3

Q ss_pred             CccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCcc
Q 048551           80 VQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPAS  159 (409)
Q Consensus        80 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~  159 (409)
                      ++..-..+|.++++|+.+.|..+ ++..-..+|.++++|+.+++..+ ++..-...|.++.+|+.+.+..+ +.......
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a  135 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA  135 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence            34234557889999999999754 77556678999999999999765 55344566888889988776544 44344556


Q ss_pred             ccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccCchHHhhCCCcc
Q 048551          160 IQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNL  238 (409)
Q Consensus       160 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L  238 (409)
                      |.++..++......  +.......|.++.+|+.+.+.++. ..... .|.++.+|+.+++..+ ++ .++...+..+..|
T Consensus       136 F~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L  210 (394)
T 4fs7_A          136 FKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILL  210 (394)
T ss_dssp             TTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTC
T ss_pred             eecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhcccccc
Confidence            66665444333222  222345678999999999998654 33444 7888999999999876 44 5666656688999


Q ss_pred             ceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh-hcccCcEEecccCCccccccccccCChhccCCCCCC
Q 048551          239 RKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA-ATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLD  317 (409)
Q Consensus       239 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~  317 (409)
                      +.+.+..+...  +........+|+.+.+... ++......+. ...+ +.+.+..+...       --...+..+..++
T Consensus       211 ~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l-~~~~~~~~~~~-------i~~~~F~~~~~l~  279 (394)
T 4fs7_A          211 ENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDL-ESISIQNNKLR-------IGGSLFYNCSGLK  279 (394)
T ss_dssp             CBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSC-CEEEECCTTCE-------ECSCTTTTCTTCC
T ss_pred             ceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccc-eeEEcCCCcce-------eeccccccccccc
Confidence            99988776443  3344455678898887543 2222211111 1112 45555444322       1112344444544


Q ss_pred             ccc----------cCCCCCCCEEECcCCccccccchhhhcCCCCcEEEeeccceecCCCC--CCCCCCCeecccCCCCce
Q 048551          318 SLA----------TDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYNHFDGEVPTK--GVFNNKTRISLAGNGKLC  385 (409)
Q Consensus       318 ~L~----------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~n~l~~~~p~~--~~~~~L~~L~l~~Np~l~  385 (409)
                      .+.          |.++.+|+.+.+..+ ++.+...+|.++.+|+.+++.++++ .+...  ..+.+|+.+.+..|  +.
T Consensus       280 ~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~v~-~I~~~aF~~c~~L~~i~lp~~--l~  355 (394)
T 4fs7_A          280 KVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYLVE-EIGKRSFRGCTSLSNINFPLS--LR  355 (394)
T ss_dssp             EEEECSSEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTTCC-EECTTTTTTCTTCCEECCCTT--CC
T ss_pred             eeccCceeeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCccc-EEhHHhccCCCCCCEEEECcc--cc
Confidence            443          778999999999865 6655667899999999999955554 34433  56788999998766  33


Q ss_pred             ecCCCCCCCCCCCCC
Q 048551          386 GGFDGLHSPSCHSKD  400 (409)
Q Consensus       386 g~~p~~~~~~~~~~~  400 (409)
                       .|++..|..|..-+
T Consensus       356 -~I~~~aF~~C~~L~  369 (394)
T 4fs7_A          356 -KIGANAFQGCINLK  369 (394)
T ss_dssp             -EECTTTBTTCTTCC
T ss_pred             -EehHHHhhCCCCCC
Confidence             45544566676443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.02  E-value=3.7e-08  Score=94.60  Aligned_cols=147  Identities=11%  Similarity=-0.023  Sum_probs=75.4

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCc---ccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEE
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNS---FSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKL  145 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  145 (409)
                      .|+.+.+..+ ++..-..+|.++++|+.+.+..|.   ++..-..+|.++.+|+.+.+..+ ++......|..+.+|+.+
T Consensus        65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i  142 (394)
T 4gt6_A           65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV  142 (394)
T ss_dssp             CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred             cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence            3566666543 443344566666677777666543   44333455666666666655443 332333446666667766


Q ss_pred             EeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeec
Q 048551          146 SFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHD  220 (409)
Q Consensus       146 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~  220 (409)
                      .+..+ +.......|..+..|+.+.+..+ +...-...|.+ .+|+.+.+..+...-....+.++.+++......
T Consensus       143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~  214 (394)
T 4gt6_A          143 TIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTRIGTNAFSECFALSTITSDS  214 (394)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCEECTTTTTTCTTCCEEEECC
T ss_pred             cccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccccccchhhhccccceecccc
Confidence            66533 22234445666666666666543 33233334433 456666665443221112455555555555443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.00  E-value=2.5e-10  Score=108.12  Aligned_cols=68  Identities=16%  Similarity=0.240  Sum_probs=41.5

Q ss_pred             CCCCCcEEEeecCcCcccCchHHhh--CCCccceeeccccccccc----cchhhhcCCCCCEEEcccCcCcccc
Q 048551          209 NLSSLEMIYLHDNRLNGNLPPVIGA--KLPNLRKIVIALNNFTGP----LPDSFSNASNRERLELSYNQFRGKS  276 (409)
Q Consensus       209 ~l~~L~~L~l~~n~l~~~~p~~~~~--~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~  276 (409)
                      .+++|+.|++.+|.+.+..+..++.  .+++|++|+|+.|.+++.    ++..+..+++|+.|++++|.+++..
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~  323 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM  323 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence            3567777777777665443333331  356777777777777653    2233345677777777777776543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.94  E-value=6.3e-10  Score=105.34  Aligned_cols=198  Identities=16%  Similarity=0.155  Sum_probs=131.7

Q ss_pred             CCcEEEecCCCCcc-c-------cCccccCCCCCCEEEccCCccc---------ccCCccccCCCCCcEEEcCCCcCCcc
Q 048551           69 SLRFINIADNGVQG-E-------IPNELGNLVRLEKLILANNSFS---------GTIPTNLSLRSKLMLFFANRNILAGE  131 (409)
Q Consensus        69 ~l~~L~L~~n~l~~-~-------~p~~~~~l~~L~~L~L~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~l~~~  131 (409)
                      +++.|.+......+ .       +..+...+++|+.|.+......         +.+...+..+++|+.|++++|.-. .
T Consensus       108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~  186 (362)
T 2ra8_A          108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-S  186 (362)
T ss_dssp             GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-B
T ss_pred             hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-e
Confidence            67788877665442 1       2334566889999998765331         123344567899999999887311 2


Q ss_pred             CCcccCCCCCCcEEEeecccccccCCcccc--CCCCCcEEeCCC--CCCCCC-----CCCCC--CCCCCCcEEEccCCcC
Q 048551          132 IPAEIGNLFKLEKLSFCVIKLTGQLPASIQ--NLSSHLEADSNR--NNFGGK-----IPESP--GQLRSLFYLNVGGNQF  200 (409)
Q Consensus       132 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~l~~--n~l~~~-----~~~~~--~~l~~L~~L~l~~n~l  200 (409)
                      ++. +. +++|++|++..+.+.......+.  .+++|+.|+|+.  +...+.     +...+  ..+++|++|++.+|.+
T Consensus       187 l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i  264 (362)
T 2ra8_A          187 IGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE  264 (362)
T ss_dssp             CCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTT
T ss_pred             ecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCC
Confidence            333 43 78999999998887654444444  789999999853  222111     11122  3579999999999998


Q ss_pred             cccCc-c---cCCCCCCcEEEeecCcCcccCchHHh---hCCCccceeeccccccccccchhhhc-CCCCCEEEcccCc
Q 048551          201 SGMFL-P---VYNLSSLEMIYLHDNRLNGNLPPVIG---AKLPNLRKIVIALNNFTGPLPDSFSN-ASNRERLELSYNQ  271 (409)
Q Consensus       201 ~~~~~-~---~~~l~~L~~L~l~~n~l~~~~p~~~~---~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~N~  271 (409)
                      ..... .   ...+++|+.|+++.|.+.+.-+..+.   ..+++|+.|++++|.++...-..+.. +  ...++++.++
T Consensus       265 ~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          265 QNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             chHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            75332 1   23578999999999999854332332   14689999999999988655555544 3  4668888776

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.93  E-value=7.7e-08  Score=92.34  Aligned_cols=285  Identities=9%  Similarity=0.020  Sum_probs=153.5

Q ss_pred             ecCCCcEEEecCCC---CccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCC
Q 048551           66 TCASLRFINIADNG---VQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKL  142 (409)
Q Consensus        66 ~c~~l~~L~L~~n~---l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  142 (409)
                      .|.+|+.+.+..+.   ++..-..+|..+.+|+.+.+..+ ++......|..+.+|+.+.+..+... .....|..+..|
T Consensus        85 ~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~~~-I~~~~F~~c~~L  162 (394)
T 4gt6_A           85 NCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGVTS-VADGMFSYCYSL  162 (394)
T ss_dssp             TCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTC
T ss_pred             CCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccceeee-ecccceeccccc
Confidence            46799999998764   55344567888999999888765 55455667889999999999755433 445668889999


Q ss_pred             cEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCccc--------------C
Q 048551          143 EKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPV--------------Y  208 (409)
Q Consensus       143 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------------~  208 (409)
                      +.+.+..+ ++......|. ...|+.+.+..+-.. .....|.++.+++......+........+              .
T Consensus       163 ~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (394)
T 4gt6_A          163 HTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYP  239 (394)
T ss_dssp             CEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECC
T ss_pred             ccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhccccceecccccccccccceeecccccccccccccc
Confidence            99998755 4434344454 367888888655332 44566777888887776554433221111              1


Q ss_pred             CCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh-hcccCc
Q 048551          209 NLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA-ATSYSQ  287 (409)
Q Consensus       209 ~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-l~~l~~  287 (409)
                      ....+..+.+.. .++ .+....+..+..|+.+.+..+..+ .....|.+++.|+.+.+.. .++......|. -.+| +
T Consensus       240 ~~~~~~~~~ip~-~v~-~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L-~  314 (394)
T 4gt6_A          240 SQREDPAFKIPN-GVA-RIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISL-K  314 (394)
T ss_dssp             TTCCCSEEECCT-TEE-EECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTC-C
T ss_pred             cccccceEEcCC-cce-EcccceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCc-C
Confidence            112223333221 122 233333446677777777654333 4455677777787777742 33322111111 0011 2


Q ss_pred             EEecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCC
Q 048551          288 RLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPT  366 (409)
Q Consensus       288 ~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~  366 (409)
                      .+++..+ ++       .|...          .|.++.+|+.+.+..+ ++..-..+|.++.+|+.+++ ++....  ..
T Consensus       315 ~i~lp~~-v~-------~I~~~----------aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~  373 (394)
T 4gt6_A          315 SIDIPEG-IT-------QILDD----------AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW--NA  373 (394)
T ss_dssp             EEECCTT-CC-------EECTT----------TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH--HT
T ss_pred             EEEeCCc-cc-------EehHh----------HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh--hh
Confidence            2222111 00       11110          1555666677766543 54344556667777777777 433221  11


Q ss_pred             CCCCCCCCeecccCC
Q 048551          367 KGVFNNKTRISLAGN  381 (409)
Q Consensus       367 ~~~~~~L~~L~l~~N  381 (409)
                      .....+|+.+.+..|
T Consensus       374 ~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          374 ISTDSGLQNLPVAPG  388 (394)
T ss_dssp             CBCCCCC--------
T ss_pred             hhccCCCCEEEeCCC
Confidence            123445555555433

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.63  E-value=7.3e-06  Score=77.91  Aligned_cols=283  Identities=11%  Similarity=0.031  Sum_probs=158.8

Q ss_pred             cCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEE
Q 048551           67 CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS  146 (409)
Q Consensus        67 c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  146 (409)
                      +++++.+.+.. +++..-..+|.++.+|+.++|..+ ++..-..+|.++ +|+.+.+..+ ++..-..+|.. .+|+.+.
T Consensus        45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~  119 (379)
T 4h09_A           45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFE  119 (379)
T ss_dssp             GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEE
T ss_pred             ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCccccc
Confidence            34788888864 466445567999999999999754 664556677776 6777777644 44233344554 4799998


Q ss_pred             eecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-------------ccCCCCCC
Q 048551          147 FCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-------------PVYNLSSL  213 (409)
Q Consensus       147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------~~~~l~~L  213 (409)
                      +..+ ++......|.+. +++.+.+..+ ++......|..+.+++.+.+..+.......             .+.....+
T Consensus       120 lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (379)
T 4h09_A          120 FPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTG  196 (379)
T ss_dssp             CCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCC
T ss_pred             CCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccc
Confidence            8755 332333344443 5666655443 333445567777788877766543321110             22233444


Q ss_pred             cEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh-hcccCcEEecc
Q 048551          214 EMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA-ATSYSQRLNDD  292 (409)
Q Consensus       214 ~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-l~~l~~~L~l~  292 (409)
                      ..+.+....-.  +....+....+++.+.+..+ ++......+.++..|+.+.+..+ ++......+. ...+ +.+.+.
T Consensus       197 ~~~~~~~~~~~--i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l-~~i~l~  271 (379)
T 4h09_A          197 TEFTIPSTVKT--VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTAL-KTLNFY  271 (379)
T ss_dssp             SEEECCTTCCE--ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTC-CEEEEC
T ss_pred             cccccccceeE--Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehh-cccccc
Confidence            44444433221  22222225566777766544 33244455667777777776543 3222111111 0011 222221


Q ss_pred             cCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEeeccceecCCCC--CCC
Q 048551          293 DQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYNHFDGEVPTK--GVF  370 (409)
Q Consensus       293 ~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~n~l~~~~p~~--~~~  370 (409)
                      .+ +       ..++.          -.|.++++|+.+.+.++.++......|.++.+|+.+.+.+++. .+...  ..+
T Consensus       272 ~~-i-------~~i~~----------~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~l~-~I~~~aF~~C  332 (379)
T 4h09_A          272 AK-V-------KTVPY----------LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTALK-TIQVYAFKNC  332 (379)
T ss_dssp             CC-C-------SEECT----------TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTC
T ss_pred             cc-c-------eeccc----------cccccccccccccccccccceehhhhhcCCCCCCEEEcCcccc-EEHHHHhhCC
Confidence            11 0       01211          1166778888888888888756667888888999988854454 33332  556


Q ss_pred             CCCCeecccCC
Q 048551          371 NNKTRISLAGN  381 (409)
Q Consensus       371 ~~L~~L~l~~N  381 (409)
                      .+|+.+.+..+
T Consensus       333 ~~L~~i~ip~~  343 (379)
T 4h09_A          333 KALSTISYPKS  343 (379)
T ss_dssp             TTCCCCCCCTT
T ss_pred             CCCCEEEECCc
Confidence            77888877544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.51  E-value=2.2e-08  Score=85.55  Aligned_cols=63  Identities=16%  Similarity=0.141  Sum_probs=28.2

Q ss_pred             CCCCcEEEeeccccccc----CCccccCCCCCcEEeC--CCCCCCCCC----CCCCCCCCCCcEEEccCCcCc
Q 048551          139 LFKLEKLSFCVIKLTGQ----LPASIQNLSSHLEADS--NRNNFGGKI----PESPGQLRSLFYLNVGGNQFS  201 (409)
Q Consensus       139 l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l--~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~  201 (409)
                      .++|++|+|++|.+...    +...+...+.|++|++  ++|.+....    ...+...++|++|++++|.+.
T Consensus        92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            34455555555544432    2233444445555555  445544221    122223345566666655543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.42  E-value=1.8e-08  Score=86.02  Aligned_cols=88  Identities=13%  Similarity=0.064  Sum_probs=46.7

Q ss_pred             CCCCCCcEEEeeccccccc----CCccccCCCCCcEEeCCCCCCCCC----CCCCCCCCCCCcEEEc--cCCcCcccCc-
Q 048551          137 GNLFKLEKLSFCVIKLTGQ----LPASIQNLSSHLEADSNRNNFGGK----IPESPGQLRSLFYLNV--GGNQFSGMFL-  205 (409)
Q Consensus       137 ~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l--~~n~l~~~~~-  205 (409)
                      ...++|++|+|++|.+...    +...+...+.|++|++++|.+...    +...+...++|++|++  ++|.+..... 
T Consensus        62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~  141 (185)
T 1io0_A           62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM  141 (185)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred             HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence            3344555555555555421    223344445666667766666532    2334445556666766  5666654321 


Q ss_pred             ----ccCCCCCCcEEEeecCcCc
Q 048551          206 ----PVYNLSSLEMIYLHDNRLN  224 (409)
Q Consensus       206 ----~~~~l~~L~~L~l~~n~l~  224 (409)
                          .+...++|++|++++|.+.
T Consensus       142 ~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          142 EIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHhCCCcCEEeccCCCCC
Confidence                3334456666666666654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.35  E-value=9.9e-08  Score=85.89  Aligned_cols=64  Identities=25%  Similarity=0.254  Sum_probs=30.0

Q ss_pred             CCCCCCEEEccCCcccc--cCCccccCCCCCcEEEcCCCcCCccCCcccCCCC--CCcEEEeeccccccc
Q 048551           90 NLVRLEKLILANNSFSG--TIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLF--KLEKLSFCVIKLTGQ  155 (409)
Q Consensus        90 ~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~--~L~~L~L~~n~l~~~  155 (409)
                      ++++|++|+|++|+|++  .+|..+..+++|++|+|++|++++.  ..+..+.  +|++|++++|.+.+.
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~  235 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDT  235 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGG
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccc
Confidence            34555555555555554  2333444555555555555555532  1122222  455555555555443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.15  E-value=1.4e-06  Score=78.32  Aligned_cols=78  Identities=19%  Similarity=0.221  Sum_probs=61.5

Q ss_pred             cCCCcEEEecCCCCcc--ccCccccCCCCCCEEEccCCcccccCCccccCCC--CCcEEEcCCCcCCccCCc-------c
Q 048551           67 CASLRFINIADNGVQG--EIPNELGNLVRLEKLILANNSFSGTIPTNLSLRS--KLMLFFANRNILAGEIPA-------E  135 (409)
Q Consensus        67 c~~l~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~p~-------~  135 (409)
                      +.+|+.|+|++|+|++  .+|..+..+++|++|+|++|.|++.  ..+..++  +|++|++++|.+.+.+|.       .
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            4589999999999997  4667778999999999999999965  3344444  999999999999876662       2


Q ss_pred             cCCCCCCcEEE
Q 048551          136 IGNLFKLEKLS  146 (409)
Q Consensus       136 ~~~l~~L~~L~  146 (409)
                      +..+++|+.||
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            45566666654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.03  E-value=9.3e-05  Score=70.20  Aligned_cols=181  Identities=12%  Similarity=0.022  Sum_probs=116.7

Q ss_pred             cCccccCCCCCCEEEccCCcccc------------cCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeeccc
Q 048551           84 IPNELGNLVRLEKLILANNSFSG------------TIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIK  151 (409)
Q Consensus        84 ~p~~~~~l~~L~~L~L~~n~l~~------------~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~  151 (409)
                      -...|..+..++...+..+....            .....+.....+..+.+...... .....+....+|+.+.+..+ 
T Consensus       150 ~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-  227 (379)
T 4h09_A          150 KDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-  227 (379)
T ss_dssp             CSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-
T ss_pred             ccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeE-Eeecccccccccceeeeccc-
Confidence            34578888888888877653321            11223344555666655444322 34445666777888777544 


Q ss_pred             ccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccCchH
Q 048551          152 LTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLPPV  230 (409)
Q Consensus       152 l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~  230 (409)
                      ++......+.++..|+.+.+..+ ++......|.++.+|+.+.+..+ +..... .|.++.+|+.+.+.++.++ .++..
T Consensus       228 ~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~  304 (379)
T 4h09_A          228 VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPR  304 (379)
T ss_dssp             CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTT
T ss_pred             eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccc-eehhh
Confidence            33344556777788888887655 44455566777888888887654 444444 6777888888888877777 66666


Q ss_pred             HhhCCCccceeeccccccccccchhhhcCCCCCEEEcccC
Q 048551          231 IGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYN  270 (409)
Q Consensus       231 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N  270 (409)
                      .+.++.+|+.+.+..+ ++.....+|.+|.+|+.+.+..+
T Consensus       305 aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          305 VFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             hhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            5557788888888644 55444567888888888877543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.00  E-value=1.6e-06  Score=72.49  Aligned_cols=34  Identities=18%  Similarity=0.212  Sum_probs=14.3

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCC
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANN  102 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  102 (409)
                      .|+.||++++.+++.--..+..+++|++|+|++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC   95 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence            3444444444444332233344444444444444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.91  E-value=1.3e-05  Score=67.00  Aligned_cols=86  Identities=13%  Similarity=0.049  Sum_probs=61.0

Q ss_pred             CCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCc-CcccCchHHhhCC----Cccceeeccccc-cccccchhhhcCC
Q 048551          188 RSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNR-LNGNLPPVIGAKL----PNLRKIVIALNN-FTGPLPDSFSNAS  260 (409)
Q Consensus       188 ~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~-l~~~~p~~~~~~l----~~L~~L~L~~n~-l~~~~p~~l~~l~  260 (409)
                      .+|++|+++++.++...- .+..+++|+.|++++|. +++.--..+. .+    ++|++|++++|. +++..-..+.+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~-~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLS-QLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHH-TCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHH-hcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            467888888887765433 56778888888888885 6543333444 33    468999999874 7765556678889


Q ss_pred             CCCEEEcccCc-Ccc
Q 048551          261 NRERLELSYNQ-FRG  274 (409)
Q Consensus       261 ~L~~L~Ls~N~-l~~  274 (409)
                      +|+.|+++++. +++
T Consensus       140 ~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          140 NLKYLFLSDLPGVKE  154 (176)
T ss_dssp             TCCEEEEESCTTCCC
T ss_pred             CCCEEECCCCCCCCc
Confidence            99999998875 443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.10  E-value=0.00014  Score=62.00  Aligned_cols=82  Identities=20%  Similarity=0.150  Sum_probs=45.2

Q ss_pred             CCcEEEecCC-CCccc----cCccccCCCCCCEEEccCCcccccC----CccccCCCCCcEEEcCCCcCCcc----CCcc
Q 048551           69 SLRFINIADN-GVQGE----IPNELGNLVRLEKLILANNSFSGTI----PTNLSLRSKLMLFFANRNILAGE----IPAE  135 (409)
Q Consensus        69 ~l~~L~L~~n-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~p~~  135 (409)
                      .+++|+|+++ +|.+.    +-+.+..-+.|+.|+|++|.|.+.-    ...+..-+.|++|+|++|.|.+.    +-+.
T Consensus        42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a  121 (197)
T 1pgv_A           42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS  121 (197)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred             CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence            5677777764 55432    3344555566777777777766432    22333456666666666666532    1223


Q ss_pred             cCCCCCCcEEEeecc
Q 048551          136 IGNLFKLEKLSFCVI  150 (409)
Q Consensus       136 ~~~l~~L~~L~L~~n  150 (409)
                      +..-+.|++|+|++|
T Consensus       122 L~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          122 TLVTQSIVEFKADNQ  136 (197)
T ss_dssp             TTTTCCCSEEECCCC
T ss_pred             HhhCCceeEEECCCC
Confidence            344445666666543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.89  E-value=0.0017  Score=55.18  Aligned_cols=66  Identities=12%  Similarity=0.181  Sum_probs=31.5

Q ss_pred             CCCCCcEEEeecC-cCccc----CchHHhhCCCccceeeccccccccc----cchhhhcCCCCCEEEcccCcCccc
Q 048551          209 NLSSLEMIYLHDN-RLNGN----LPPVIGAKLPNLRKIVIALNNFTGP----LPDSFSNASNRERLELSYNQFRGK  275 (409)
Q Consensus       209 ~l~~L~~L~l~~n-~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~  275 (409)
                      +-+.|++|++++| .+...    +...+. .-+.|+.|+|++|++.+.    +.+.+..-+.|++|+|++|.|.+.
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~-~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~  113 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAAC-NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE  113 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHT-TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHh-hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence            3445555555553 44311    222222 334556666666655532    223334445666666666666543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.85  E-value=0.0024  Score=50.57  Aligned_cols=57  Identities=18%  Similarity=0.285  Sum_probs=39.7

Q ss_pred             cEEEecCCCCc-cccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCC
Q 048551           71 RFINIADNGVQ-GEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILA  129 (409)
Q Consensus        71 ~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  129 (409)
                      +.++.++++++ ..+|..+.  ++|++|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            46777888876 35665443  46888888888888555566677777777777777654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.56  E-value=0.0023  Score=50.66  Aligned_cols=56  Identities=20%  Similarity=0.285  Sum_probs=33.5

Q ss_pred             EEEeecCcCc-ccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCc
Q 048551          215 MIYLHDNRLN-GNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFR  273 (409)
Q Consensus       215 ~L~l~~n~l~-~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  273 (409)
                      .++.+++.++ ..+|..+.   ++|++|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp---~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP---VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC---TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC---cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4555555553 24454332   45667777777776555555666777777777777664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	409
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-20
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	7e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	9e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 89.8 bits (221), Expect = 1e-20
 Identities = 83/374 (22%), Positives = 132/374 (35%), Gaps = 71/374 (18%)

Query: 29  NETDRLALLAIKSQLHDPLEVTSSLTNSVNLCE--WTGVTCASLRFINIADNGVQGEIPN 86
           N  D+ ALL IK  L +P    SS   + + C   W GV C                  +
Sbjct: 4   NPQDKQALLQIKKDLGNP-TTLSSWLPTTDCCNRTWLGVLC------------------D 44

Query: 87  ELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEK-- 144
                 R+  L L+  +     P                      IP+ + NL  L    
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYP----------------------IPSSLANLPYLNFLY 82

Query: 145 LSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMF 204
           +      L G +P +I  L+          N  G IP+   Q+++L  L+   N  SG  
Sbjct: 83  IGGI-NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL 141

Query: 205 LP-VYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRE 263
            P + +L +L  I    NR++G +P   G+       + I+ N  TG +P +F+N +   
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF 201

Query: 264 RLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDS 323
                       S+   +  +  +     +       +                      
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS------------------ 243

Query: 324 LKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTKGVFNNKTRISLAGNG 382
            K++  LDL +N + G LP+ L  L FL  LN+ +N+  GE+P  G        + A N 
Sbjct: 244 -KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302

Query: 383 KLCGGFDGLHSPSC 396
            LCG       P+C
Sbjct: 303 CLCGS----PLPAC 312

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.4 bits (163), Expect = 4e-13
 Identities = 48/292 (16%), Positives = 87/292 (29%), Gaps = 29/292 (9%)

Query: 60  CEWTGVTCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLM 119
           C    V C+ L    +  +     +P +         L L NN  +     +      L 
Sbjct: 10  CHLRVVQCSDLGLEKVPKD-----LPPDT------ALLDLQNNKITEIKDGDFKNLKNLH 58

Query: 120 LFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGK 179
                 N ++   P     L KLE+L     +L   LP  +      L    N      K
Sbjct: 59  TLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMPKTLQELRVHENEITKVRK 117

Query: 180 IPESPGQLRSLFYLNVGGNQFSGMFLPVY-NLSSLEMIYLHDNRLNGNLPPVIGAKLPNL 238
              +      +  L     + SG+    +  +  L  I + D  +   +P  +    P+L
Sbjct: 118 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSL 173

Query: 239 RKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHG 298
            ++ +  N  T     S    +N  +L LS+N          A T + + L+ ++     
Sbjct: 174 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK 233

Query: 299 RQQNICYLP------------TGISNLVNLDSLATDSLKSIEELDLSSNNLS 338
               +                + I +             S   + L SN + 
Sbjct: 234 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.0 bits (110), Expect = 2e-06
 Identities = 31/183 (16%), Positives = 61/183 (33%), Gaps = 28/183 (15%)

Query: 205 LPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRER 264
           +P        ++ L +N++   +       L NL  +++  N  +   P +F+     ER
Sbjct: 25  VPKDLPPDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER 83

Query: 265 LELSYNQFRG-------------------KSIWRSAATSYSQRLNDDDQNHHGRQ----- 300
           L LS NQ +                      + +S     +Q +  +   +  +      
Sbjct: 84  LYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 143

Query: 301 ---QNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLY 357
              Q +  L        N+ ++      S+ EL L  N ++      L  L+ L  L L 
Sbjct: 144 GAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 203

Query: 358 NHF 360
            + 
Sbjct: 204 FNS 206

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 28/195 (14%), Positives = 58/195 (29%), Gaps = 12/195 (6%)

Query: 55  NSVNLCEWTGVTCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSL 114
             V    + G+    +  +        G        + +L  + +A+ + +         
Sbjct: 113 TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS 172

Query: 115 RSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRN 174
            ++L L   + N +     A +  L  L KL      ++     S+ N     E   N N
Sbjct: 173 LTELHL---DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 229

Query: 175 NFGGKIPESPGQLRSLFYLNVGGNQFS----GMFLPVY---NLSSLEMIYLHDNRLN-GN 226
               K+P      + +  + +  N  S      F P       +S   + L  N +    
Sbjct: 230 KLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 288

Query: 227 LPPVIGAKLPNLRKI 241
           + P     +     +
Sbjct: 289 IQPSTFRCVYVRAAV 303

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.9 bits (123), Expect = 6e-08
 Identities = 43/197 (21%), Positives = 72/197 (36%), Gaps = 31/197 (15%)

Query: 185 GQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIA 244
            +L +L  L    NQ S +  P+  L++L+ + L+ N+L       +   L NL  + +A
Sbjct: 194 AKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQLKD--IGTLA-SLTNLTDLDLA 249

Query: 245 LNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNIC 304
            N  +   P   S  +    L+L  NQ    S         +  LN++         N+ 
Sbjct: 250 NNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLK 307

Query: 305 YLP---------TGISNLVNLDSLAT--------------DSLKSIEELDLSSNNLSGQL 341
            L          + IS + +L  L                 +L +I  L    N +S   
Sbjct: 308 NLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLT 367

Query: 342 PRLLVNLSFLVLLNLYN 358
           P  L NL+ +  L L +
Sbjct: 368 P--LANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 3e-07
 Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 11/155 (7%)

Query: 67  CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRN 126
             +L  +++A+N +    P  L  L +L +L L  N  S   P         +    N+ 
Sbjct: 240 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 297

Query: 127 ILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQ 186
                  + I NL  L  L+     ++   P  + +L+         N        S   
Sbjct: 298 E----DISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLAN 349

Query: 187 LRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDN 221
           L ++ +L+ G NQ S    P+ NL+ +  + L+D 
Sbjct: 350 LTNINWLSAGHNQISD-LTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.8 bits (102), Expect = 2e-05
 Identities = 41/276 (14%), Positives = 83/276 (30%), Gaps = 81/276 (29%)

Query: 60  CEWTGVTCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLM 119
                    +L  +   +N +    P  +     L++L L  N         L+  + L 
Sbjct: 189 DISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLT 244

Query: 120 LFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGK 179
                 N ++   P  +  L KL +L     +++   P  +  L++    + N N    +
Sbjct: 245 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL--E 298

Query: 180 IPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLR 239
                  L++L YL +  N  S    PV +L+ L+ ++  +N+++               
Sbjct: 299 DISPISNLKNLTYLTLYFNNISD-ISPVSSLTKLQRLFFANNKVSD-------------- 343

Query: 240 KIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGR 299
                          S +N +N   L   +NQ                            
Sbjct: 344 -------------VSSLANLTNINWLSAGHNQI--------------------------- 363

Query: 300 QQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSN 335
                   + ++ L NL  +         +L L+  
Sbjct: 364 --------SDLTPLANLTRI--------TQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 55/346 (15%), Positives = 106/346 (30%), Gaps = 40/346 (11%)

Query: 69  SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIP-TNLSLRSKLMLFFANRNI 127
            +  +     G++  I   +  L  L ++  +NN  +   P  NL+    +++       
Sbjct: 45  QVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 102

Query: 128 LAGEIPAEIGNLFKLEKLSFCVIKLTGQLPA---------SIQNLSSHLEADSNRNNFGG 178
           +             L       I     L           +I ++S+     S +    G
Sbjct: 103 ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG 162

Query: 179 KIPESPGQLRSL--FYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIG---- 232
                   L +L         +        +  L++LE +   +N+++   P  I     
Sbjct: 163 NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLD 222

Query: 233 ---------------AKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSI 277
                          A L NL  + +A N  +   P   S  +    L+L  NQ    S 
Sbjct: 223 ELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 280

Query: 278 WRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSL-ATDSLKSIEELDLSSNN 336
                   +  LN++         N+  L        N+  +    SL  ++ L  ++N 
Sbjct: 281 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNK 340

Query: 337 LSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTKGVFNNKTRISLAGN 381
           +S      L NL+ +  L+  +N      P        T++ L   
Sbjct: 341 VSD--VSSLANLTNINWLSAGHNQISDLTPLAN-LTRITQLGLNDQ 383

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 2e-06
 Identities = 34/193 (17%), Positives = 66/193 (34%), Gaps = 4/193 (2%)

Query: 58  NLCEWTGVTCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSK 117
           ++   T      L  +++   G+Q   P     L  L+ L L +N+              
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154

Query: 118 LMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFG 177
           L   F + N ++         L  L++L     ++    P + ++L   +      NN  
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214

Query: 178 GKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPN 237
               E+   LR+L YL +  N +          + L+      + +  +LP     +L  
Sbjct: 215 ALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQ----RLAG 270

Query: 238 LRKIVIALNNFTG 250
                +A N+  G
Sbjct: 271 RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 3e-06
 Identities = 49/273 (17%), Positives = 88/273 (32%), Gaps = 23/273 (8%)

Query: 83  EIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKL 142
            +P  +    +  ++ L  N  S     +      L + + + N+LA    A    L  L
Sbjct: 25  AVPVGIPAASQ--RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 143 EKLSFCVIKLTGQLPASIQNLSSHLEA-DSNRNNFGGKIPESPGQLRSLFYLNVGGNQFS 201
           E+L          +  +  +    L     +R       P     L +L YL +  N   
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 202 GMFLPV-YNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNAS 260
            +      +L +L  ++LH NR++  +P      L +L ++++  N      P +F +  
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201

Query: 261 NRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLA 320
               L L  N          A     Q L  +D                  N    D  A
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLND------------------NPWVCDCRA 243

Query: 321 TDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVL 353
                 +++   SS+ +   LP+ L       L
Sbjct: 244 RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRL 276

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 7e-05
 Identities = 28/227 (12%), Positives = 69/227 (30%), Gaps = 27/227 (11%)

Query: 132 IPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLF 191
           +P  I  +F  +                    +  ++ +  + +    + ++  +L S+ 
Sbjct: 10  VPTPIKQIFSDD------------------AFAETIKDNLKKKSVTDAVTQN--ELNSID 49

Query: 192 YLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGP 251
            +    +    +   +  L ++  ++L+ N+L         A L NL  + +  N     
Sbjct: 50  QIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDI---KPLANLKNLGWLFLDENKVKDL 105

Query: 252 LPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGIS 311
                     +              +            N+   +     +        + 
Sbjct: 106 -SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLE 164

Query: 312 NLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYN 358
           +    D +    L  ++ L LS N++S    R L  L  L +L L++
Sbjct: 165 DNQISDIVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFS 209

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 24/178 (13%), Positives = 45/178 (25%), Gaps = 21/178 (11%)

Query: 68  ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIP----TNLSLRSKLMLFF- 122
                +++++N +       L    RL +L L     +          L           
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90

Query: 123 ----------------ANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSH 166
                            + N L       +  L +L++L     +L    P  +      
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150

Query: 167 LEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLN 224
            +     NN           L +L  L +  N    +    +    L   +LH N   
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 4e-04
 Identities = 30/204 (14%), Positives = 59/204 (28%), Gaps = 8/204 (3%)

Query: 159 SIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVY-NLSSLEMIY 217
            +  ++SHLE + ++ N    +P      +    L++  N      L      + L  + 
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 218 LHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSI 277
           L    L           L  L      L +         +            +   G   
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 278 WRSAATSYSQRLNDDDQNHHG---RQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSS 334
                     + N+      G       +  L    +NL  L +   + L++++ L L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 335 NNLSGQLPRLLVNLSFLVLLNLYN 358
           N+L   +P+       L    L+ 
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHG 204

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 15/46 (32%), Positives = 18/46 (39%)

Query: 315 NLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYNHF 360
           NL +L  D  K    L LS N L       L+  + L  LNL    
Sbjct: 21  NLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 9e-04
 Identities = 13/65 (20%), Positives = 19/65 (29%)

Query: 294 QNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVL 353
                  Q      +  +NL  L +           LD+S   +       L NL  L  
Sbjct: 170 NCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA 229

Query: 354 LNLYN 358
            + YN
Sbjct: 230 RSTYN 234

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.2 bits (84), Expect = 0.002
 Identities = 37/312 (11%), Positives = 80/312 (25%), Gaps = 20/312 (6%)

Query: 69  SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFS-------GTIPTNLSLRSKLMLF 121
           SL+   I     +  +   L     +++++L+ N+              +          
Sbjct: 9   SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 122 FANRNILAGEIPAEIGNL----FKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFG 177
                 +  EIP  +  L     K  KL    +      P + + L   L   +   +  
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 178 GKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPN 237
                   Q  +     +     +        L S+          +             
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187

Query: 238 LRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHH 297
           L  + +  N       +           EL     +  +     +++ +  L        
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247

Query: 298 GRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLV-----NLSFLV 352
               +      G + +  +D+ +      ++ L L  N +     R L       +  L+
Sbjct: 248 LGLNDCLLSARGAAAV--VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 305

Query: 353 LLNL-YNHFDGE 363
            L L  N F  E
Sbjct: 306 FLELNGNRFSEE 317

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 0.003
 Identities = 6/70 (8%), Positives = 19/70 (27%), Gaps = 4/70 (5%)

Query: 212 SLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTG----PLPDSFSNASNRERLEL 267
            ++ + +    L+      +   L   + + +     T      +  +         L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 268 SYNQFRGKSI 277
             N+     +
Sbjct: 63  RSNELGDVGV 72

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	409
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.95
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.92
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.84
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.8
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.79
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.79
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.79
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.76
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.76
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.75
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.71
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.67
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.59
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.55
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.55
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.55
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.54
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.54
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.53
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.51
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.48
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.35
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.34
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.32
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.29
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.33
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.23
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.68
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.64
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.07
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.87

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=7.7e-43  Score=325.65  Aligned_cols=299  Identities=30%  Similarity=0.519  Sum_probs=227.9

Q ss_pred             CCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCC--ceeeecC------CCcEEEecCCCCcc--ccCccccCCCCCCEE
Q 048551           28 ANETDRLALLAIKSQLHDPLEVTSSLTNSVNLCE--WTGVTCA------SLRFINIADNGVQG--EIPNELGNLVRLEKL   97 (409)
Q Consensus        28 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~--~~g~~c~------~l~~L~L~~n~l~~--~~p~~~~~l~~L~~L   97 (409)
                      |.++|++||++||+++.+|. .+++|..+.|||.  |.||+|+      +|+.|+|++++++|  .+|+.++++++|++|
T Consensus         3 c~~~e~~aLl~~k~~~~~~~-~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L   81 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFL   81 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEE
T ss_pred             CCHHHHHHHHHHHHHCCCCC-cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCcccccc
Confidence            78999999999999998875 5789998899994  9999997      47888888888876  467788888888888


Q ss_pred             EccC-CcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCC
Q 048551           98 ILAN-NSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNF  176 (409)
Q Consensus        98 ~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l  176 (409)
                      +|++ |.++|.+|..|+++++|++|++++|++.+..+..+..+.+|+++++++|.+.+.+|..+.+++.++++++++|.+
T Consensus        82 ~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l  161 (313)
T d1ogqa_          82 YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI  161 (313)
T ss_dssp             EEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC
T ss_pred             ccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeecccccc
Confidence            8875 677777777777777777777777777766666666777777777777777666666666666666666666666


Q ss_pred             CCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhh
Q 048551          177 GGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSF  256 (409)
Q Consensus       177 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l  256 (409)
                      .+.+|..+..+.++                      ++.+++++|++++..|..+. .+. ...++++++...+.+|..+
T Consensus       162 ~~~ip~~~~~l~~l----------------------~~~l~~~~n~l~~~~~~~~~-~l~-~~~l~l~~~~~~~~~~~~~  217 (313)
T d1ogqa_         162 SGAIPDSYGSFSKL----------------------FTSMTISRNRLTGKIPPTFA-NLN-LAFVDLSRNMLEGDASVLF  217 (313)
T ss_dssp             EEECCGGGGCCCTT----------------------CCEEECCSSEEEEECCGGGG-GCC-CSEEECCSSEEEECCGGGC
T ss_pred             cccccccccccccc----------------------cccccccccccccccccccc-ccc-ccccccccccccccccccc
Confidence            65555554444333                      24455555555555555554 333 4467888888888888888


Q ss_pred             hcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCCc
Q 048551          257 SNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNN  336 (409)
Q Consensus       257 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~  336 (409)
                      ..+++++.+++++|.+++                              .+| .+           ..+++|+.|++++|+
T Consensus       218 ~~~~~l~~l~~~~~~l~~------------------------------~~~-~~-----------~~~~~L~~L~Ls~N~  255 (313)
T d1ogqa_         218 GSDKNTQKIHLAKNSLAF------------------------------DLG-KV-----------GLSKNLNGLDLRNNR  255 (313)
T ss_dssp             CTTSCCSEEECCSSEECC------------------------------BGG-GC-----------CCCTTCCEEECCSSC
T ss_pred             cccccccccccccccccc------------------------------ccc-cc-----------ccccccccccCccCe
Confidence            888888888888888764                              222 22           234677999999999


Q ss_pred             cccccchhhhcCCCCcEEEe-eccceecCCCCCCCCCCCeecccCCCCceecCCCCCCCCCC
Q 048551          337 LSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTKGVFNNKTRISLAGNGKLCGGFDGLHSPSCH  397 (409)
Q Consensus       337 l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~~~~~~L~~L~l~~Np~l~g~~p~~~~~~~~  397 (409)
                      ++|.+|..+.++++|++|+| +|+++|.+|..+.+++|+.++++||+.+||.+    +|.|.
T Consensus       256 l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~p----lp~c~  313 (313)
T d1ogqa_         256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP----LPACT  313 (313)
T ss_dssp             CEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTT----SSCCC
T ss_pred             ecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCC----CCCCC
Confidence            99999999999999999999 99999999987788999999999999999973    34573

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=8e-27  Score=215.61  Aligned_cols=267  Identities=19%  Similarity=0.264  Sum_probs=214.5

Q ss_pred             cEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecc
Q 048551           71 RFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVI  150 (409)
Q Consensus        71 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n  150 (409)
                      +.+|.++++++ .+|..+.  +.+++|+|++|+|+...+..|.++++|++|++++|.++...|..|.++++|++|++++|
T Consensus        13 ~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          13 RVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             TEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence            34444567787 7787764  68999999999999555568999999999999999999767888999999999999999


Q ss_pred             cccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccC--c-ccCCCCCCcEEEeecCcCcccC
Q 048551          151 KLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMF--L-PVYNLSSLEMIYLHDNRLNGNL  227 (409)
Q Consensus       151 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~-~~~~l~~L~~L~l~~n~l~~~~  227 (409)
                      +++ .+|..+  ...++.|++.+|.+.+..+..+.....+..++...|......  . .+..+++|+.+++++|.++ .+
T Consensus        90 ~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l  165 (305)
T d1xkua_          90 QLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TI  165 (305)
T ss_dssp             CCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SC
T ss_pred             ccC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-cc
Confidence            998 566543  357899999999998766666677788888998887654432  2 6778889999999999998 67


Q ss_pred             chHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccCC
Q 048551          228 PPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLP  307 (409)
Q Consensus       228 p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip  307 (409)
                      |..+   +++|++|++++|..++..+..+.+++.++.|++++|.+++.+                              +
T Consensus       166 ~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~------------------------------~  212 (305)
T d1xkua_         166 PQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD------------------------------N  212 (305)
T ss_dssp             CSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC------------------------------T
T ss_pred             Cccc---CCccCEEECCCCcCCCCChhHhhccccccccccccccccccc------------------------------c
Confidence            7653   578999999999999888889999999999999999887532                              2


Q ss_pred             hhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC--------CCCCCCCeecc
Q 048551          308 TGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK--------GVFNNKTRISL  378 (409)
Q Consensus       308 ~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~--------~~~~~L~~L~l  378 (409)
                      ..           +.++++|++|+|++|+|+ .+|.++..+++|++|++ +|+++. ++..        ...++|+.|++
T Consensus       213 ~~-----------~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~-i~~~~f~~~~~~~~~~~L~~L~L  279 (305)
T d1xkua_         213 GS-----------LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA-IGSNDFCPPGYNTKKASYSGVSL  279 (305)
T ss_dssp             TT-----------GGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC-CCTTSSSCSSCCTTSCCCSEEEC
T ss_pred             cc-----------ccccccceeeeccccccc-ccccccccccCCCEEECCCCccCc-cChhhccCcchhcccCCCCEEEC
Confidence            22           234577899999999998 67888999999999999 777664 3321        34678999999


Q ss_pred             cCCCCceecCCC
Q 048551          379 AGNGKLCGGFDG  390 (409)
Q Consensus       379 ~~Np~l~g~~p~  390 (409)
                      +|||+-++.+|.
T Consensus       280 ~~N~~~~~~~~~  291 (305)
T d1xkua_         280 FSNPVQYWEIQP  291 (305)
T ss_dssp             CSSSSCGGGSCG
T ss_pred             CCCcCccCcCCH
Confidence            999987777765

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.95  E-value=6.1e-28  Score=224.04  Aligned_cols=204  Identities=26%  Similarity=0.391  Sum_probs=177.4

Q ss_pred             CCCcEEEecC-CCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEE
Q 048551           68 ASLRFINIAD-NGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS  146 (409)
Q Consensus        68 ~~l~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  146 (409)
                      .+|++|+|++ |+++|.+|..|+++++|++|+|++|++.+..+..+..+..|+++++++|.+.+.+|..+++++.+++++
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~  155 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT  155 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             ccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceee
Confidence            3899999997 899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecccccccCCccccCCCCC-cEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCc
Q 048551          147 FCVIKLTGQLPASIQNLSSH-LEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLN  224 (409)
Q Consensus       147 L~~n~l~~~~p~~l~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~  224 (409)
                      +++|.+++.+|..+..+..+ +.+++++|++++..|..+..+.. ..++++.+...+..+ .+..+++++.+++++|.+.
T Consensus       156 l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~  234 (313)
T d1ogqa_         156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA  234 (313)
T ss_dssp             CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence            99999999999999988876 88999999999888887777654 468888888887777 6677888888888888887


Q ss_pred             ccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCcc
Q 048551          225 GNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRG  274 (409)
Q Consensus       225 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  274 (409)
                      +.+| .+. .+++|+.|++++|+++|.+|..++++++|++|+|++|+++|
T Consensus       235 ~~~~-~~~-~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g  282 (313)
T d1ogqa_         235 FDLG-KVG-LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG  282 (313)
T ss_dssp             CBGG-GCC-CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred             cccc-ccc-cccccccccCccCeecccCChHHhCCCCCCEEECcCCcccc
Confidence            5544 454 67788888888888888888888888888888888888774

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=1.2e-25  Score=213.78  Aligned_cols=286  Identities=23%  Similarity=0.288  Sum_probs=170.1

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC  148 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  148 (409)
                      ++++|++++++|+ .+ +.+..+++|++|++++|+|++. + .++++++|++|++++|.+++. + .++.+++|+.|+++
T Consensus        45 ~l~~L~l~~~~I~-~l-~gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~~i-~-~l~~l~~L~~L~~~  118 (384)
T d2omza2          45 QVTTLQADRLGIK-SI-DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIADI-T-PLANLTNLTGLTLF  118 (384)
T ss_dssp             TCCEEECCSSCCC-CC-TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECC
T ss_pred             CCCEEECCCCCCC-Cc-cccccCCCCCEEeCcCCcCCCC-c-cccCCcccccccccccccccc-c-cccccccccccccc
Confidence            7899999999988 44 4678899999999999999854 3 388899999999999998853 3 37888999999998


Q ss_pred             cccccccCCccccCCCCCcEEeCCCCCCC-----------------------------------------CCCCCCCCCC
Q 048551          149 VIKLTGQLPASIQNLSSHLEADSNRNNFG-----------------------------------------GKIPESPGQL  187 (409)
Q Consensus       149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~-----------------------------------------~~~~~~~~~l  187 (409)
                      ++.+++..+.  .....+.......|.+.                                         ......+..+
T Consensus       119 ~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  196 (384)
T d2omza2         119 NNQITDIDPL--KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL  196 (384)
T ss_dssp             SSCCCCCGGG--TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGC
T ss_pred             cccccccccc--cccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccc
Confidence            8877642211  11111111111111100                                         0112233455


Q ss_pred             CCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEc
Q 048551          188 RSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLEL  267 (409)
Q Consensus       188 ~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  267 (409)
                      ++++.+++++|.+++..+ ....++|+.|++++|.++ .++ .+. .+++|+.+++++|.+++..+  +..+++|++|++
T Consensus       197 ~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~-~~~-~l~-~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l  270 (384)
T d2omza2         197 TNLESLIATNNQISDITP-LGILTNLDELSLNGNQLK-DIG-TLA-SLTNLTDLDLANNQISNLAP--LSGLTKLTELKL  270 (384)
T ss_dssp             TTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC-CCG-GGG-GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEEC
T ss_pred             cccceeeccCCccCCCCc-ccccCCCCEEECCCCCCC-Ccc-hhh-cccccchhccccCccCCCCc--ccccccCCEeec
Confidence            666777777776665443 344566777777777666 443 333 56667777777776664332  566667777777


Q ss_pred             ccCcCccccchhhhhcccCcEEecccCCccccccccccCChhccCCCCCCccc-----------cCCCCCCCEEECcCCc
Q 048551          268 SYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLA-----------TDSLKSIEELDLSSNN  336 (409)
Q Consensus       268 s~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~-----------~~~l~~L~~L~Ls~N~  336 (409)
                      ++|++++...... ...+ +.+++..|.+.+       ++ .+..+++++.++           +..+++|++|++++|+
T Consensus       271 ~~~~l~~~~~~~~-~~~l-~~l~~~~n~l~~-------~~-~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~  340 (384)
T d2omza2         271 GANQISNISPLAG-LTAL-TNLELNENQLED-------IS-PISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNK  340 (384)
T ss_dssp             CSSCCCCCGGGTT-CTTC-SEEECCSSCCSC-------CG-GGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSC
T ss_pred             cCcccCCCCcccc-cccc-cccccccccccc-------cc-ccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCC
Confidence            7776665431100 1112 555555555541       11 122222221111           3445666777777777


Q ss_pred             cccccchhhhcCCCCcEEEe-eccceecCCCCCCCCCCCeecccCC
Q 048551          337 LSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTKGVFNNKTRISLAGN  381 (409)
Q Consensus       337 l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~~~~~~L~~L~l~~N  381 (409)
                      |++ ++ .+.++++|++|++ +|++++..| ...+++|+.|++++|
T Consensus       341 l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         341 VSD-VS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCC-CG-GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCCE
T ss_pred             CCC-Ch-hHcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCCC
Confidence            763 33 4666777777777 666665444 345667777777766

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=3.3e-25  Score=204.64  Aligned_cols=258  Identities=20%  Similarity=0.260  Sum_probs=203.7

Q ss_pred             CCCCCCceeeecC-------------CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEE
Q 048551           56 SVNLCEWTGVTCA-------------SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFF  122 (409)
Q Consensus        56 ~~~~c~~~g~~c~-------------~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  122 (409)
                      ..+.|.|..+.|+             ++++|+|++|+|+...+..|.++++|++|++++|.++...|..|..++.|++|+
T Consensus         6 ~~c~c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~   85 (305)
T d1xkua_           6 FRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY   85 (305)
T ss_dssp             TTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCCEecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEec
Confidence            3455788888885             688999999999944445799999999999999999977788899999999999


Q ss_pred             cCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCC--CCCCCCCCCCCCCcEEEccCCcC
Q 048551          123 ANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFG--GKIPESPGQLRSLFYLNVGGNQF  200 (409)
Q Consensus       123 l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l  200 (409)
                      +++|+++ .+|..+  ...++.|++..|.+.+..+..+.....+..++...|...  ...+..+..+++|+++++++|.+
T Consensus        86 l~~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l  162 (305)
T d1xkua_          86 LSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  162 (305)
T ss_dssp             CCSSCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             ccCCccC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCc
Confidence            9999999 566543  468999999999998666666777888888988887654  23455677889999999999998


Q ss_pred             cccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhh
Q 048551          201 SGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRS  280 (409)
Q Consensus       201 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~  280 (409)
                      ......  ..++|+.|++++|..++..+..+. .++.++.|++++|.+++..+..+.++++|++|+|++|+++       
T Consensus       163 ~~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~-~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-------  232 (305)
T d1xkua_         163 TTIPQG--LPPSLTELHLDGNKITKVDAASLK-GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-------  232 (305)
T ss_dssp             CSCCSS--CCTTCSEEECTTSCCCEECTGGGT-TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-------
T ss_pred             cccCcc--cCCccCEEECCCCcCCCCChhHhh-ccccccccccccccccccccccccccccceeeeccccccc-------
Confidence            875443  357899999999999977777766 8899999999999999888888999999999999999986       


Q ss_pred             hhcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCCccccccchh------hhcCCCCcEE
Q 048551          281 AATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRL------LVNLSFLVLL  354 (409)
Q Consensus       281 ~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~------~~~l~~L~~L  354 (409)
                                              .+|..+.           ++++|++|+|++|+|+......      ...+.+|+.|
T Consensus       233 ------------------------~lp~~l~-----------~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L  277 (305)
T d1xkua_         233 ------------------------KVPGGLA-----------DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV  277 (305)
T ss_dssp             ------------------------SCCTTTT-----------TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEE
T ss_pred             ------------------------ccccccc-----------cccCCCEEECCCCccCccChhhccCcchhcccCCCCEE
Confidence                                    3444432           3356677777777776432222      2345667777


Q ss_pred             Ee-eccce
Q 048551          355 NL-YNHFD  361 (409)
Q Consensus       355 ~L-~n~l~  361 (409)
                      ++ +|.+.
T Consensus       278 ~L~~N~~~  285 (305)
T d1xkua_         278 SLFSNPVQ  285 (305)
T ss_dssp             ECCSSSSC
T ss_pred             ECCCCcCc
Confidence            77 66553

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1e-25  Score=205.97  Aligned_cols=267  Identities=19%  Similarity=0.250  Sum_probs=206.6

Q ss_pred             cEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee-c
Q 048551           71 RFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC-V  149 (409)
Q Consensus        71 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~-~  149 (409)
                      ..++.++++++ .+|..+.  +.+++|+|++|+|+...+..|.+++.|++|++++|.+....+..+..+..++.+... .
T Consensus        14 ~~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          14 VTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             CEEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            34566777888 7787664  678999999999996666789999999999999999997777778888999998765 5


Q ss_pred             ccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccCc
Q 048551          150 IKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLP  228 (409)
Q Consensus       150 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~p  228 (409)
                      +.++...+..+.++++|++|++++|.+....+..+....+|+.+++++|.++++++ .+..+++|+.|++++|+++ .++
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~-~l~  169 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVP  169 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EEC
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccc-ccc
Confidence            66665667789999999999999999987777788888999999999999998876 7778899999999999998 555


Q ss_pred             hHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccCCh
Q 048551          229 PVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPT  308 (409)
Q Consensus       229 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~  308 (409)
                      +..+..+++|+.+++++|++++..|..|.++++|++|++++|++.+.                              .+.
T Consensus       170 ~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~------------------------------~~~  219 (284)
T d1ozna_         170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL------------------------------PTE  219 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC------------------------------CHH
T ss_pred             hhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccc------------------------------ccc
Confidence            44444889999999999999988899999999999999999998742                              122


Q ss_pred             hccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCCCCCCCCCeecccCCCCcee
Q 048551          309 GISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTKGVFNNKTRISLAGNGKLCG  386 (409)
Q Consensus       309 ~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~~~~~~L~~L~l~~Np~l~g  386 (409)
                      .+           .++++|++|++++|.+...-+.. .-...++.+.. .+++....|.  .+......+++.+ .++|
T Consensus       220 ~~-----------~~~~~L~~L~l~~N~l~C~C~~~-~l~~~l~~~~~~~~~~~C~~p~--~l~g~~l~~l~~~-~l~g  283 (284)
T d1ozna_         220 AL-----------APLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQ--RLAGRDLKRLAAN-DLQG  283 (284)
T ss_dssp             HH-----------TTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESG--GGTTCBGGGSCGG-GSCC
T ss_pred             cc-----------ccccccCEEEecCCCCCCCccch-HHHHHHHhCcCCCCceEeCCch--HHcCCccccCCHH-HCCC
Confidence            33           34567789999999888654321 11223455555 6667666665  3444455556655 4544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=7.7e-25  Score=200.08  Aligned_cols=206  Identities=18%  Similarity=0.144  Sum_probs=185.8

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcC-CCcCCccCCcccCCCCCCcEEEe
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFAN-RNILAGEIPAEIGNLFKLEKLSF  147 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~p~~~~~l~~L~~L~L  147 (409)
                      .+++|+|++|+|+...+..|.++++|++|++++|++....+..+..+..++.++.. .+.++...+..++++++|++|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            68999999999996666689999999999999999998888888899999999875 56677666778999999999999


Q ss_pred             ecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCccc
Q 048551          148 CVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGN  226 (409)
Q Consensus       148 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~  226 (409)
                      ++|.+....+..+....+|+.+++++|.+++..+..|..+++|++|++++|.+++..+ .+.++++|+.+++++|++++.
T Consensus       113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i  192 (284)
T d1ozna_         113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV  192 (284)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccccc
Confidence            9999986667778889999999999999997777889999999999999999999887 888999999999999999976


Q ss_pred             CchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccc
Q 048551          227 LPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGK  275 (409)
Q Consensus       227 ~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  275 (409)
                      .|..+. .+++|++|++++|.+.+..+..|.++++|+.|++++|++...
T Consensus       193 ~~~~f~-~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         193 HPHAFR-DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             CTTTTT-TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             ChhHhh-hhhhcccccccccccccccccccccccccCEEEecCCCCCCC
Confidence            677776 899999999999999988888999999999999999998754

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.1e-24  Score=192.70  Aligned_cols=198  Identities=21%  Similarity=0.182  Sum_probs=174.3

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC  148 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  148 (409)
                      .+.+++.++++++ .+|+.+.  +++++|+|++|+|++..+..|.++++|++|++++|+++ .+| .++.+++|++|+++
T Consensus        11 ~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls   85 (266)
T d1p9ag_          11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLS   85 (266)
T ss_dssp             TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECC
T ss_pred             CCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-cccccccccccccc
Confidence            5667899999999 7887765  68999999999999766778999999999999999998 454 36789999999999


Q ss_pred             cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccC
Q 048551          149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNL  227 (409)
Q Consensus       149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~  227 (409)
                      +|+++ ..+..+.++++|++|++++|.+.+..+..+..+.++++|++++|.++...+ .+..+++++.+++++|+++ .+
T Consensus        86 ~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~-~~  163 (266)
T d1p9ag_          86 HNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-EL  163 (266)
T ss_dssp             SSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CC
T ss_pred             ccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccc-cc
Confidence            99998 567788999999999999999998888888899999999999999998877 6778999999999999999 55


Q ss_pred             chHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCcc
Q 048551          228 PPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRG  274 (409)
Q Consensus       228 p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  274 (409)
                      +...+..+++|++|+|++|+++ .+|+.+..+++|+.|+|++|++.-
T Consensus       164 ~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence            5544448999999999999999 788888899999999999998863

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.91  E-value=1.3e-23  Score=199.52  Aligned_cols=285  Identities=20%  Similarity=0.241  Sum_probs=210.4

Q ss_pred             ecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccc
Q 048551           75 IADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTG  154 (409)
Q Consensus        75 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~  154 (409)
                      +..+.+++.+.  ...+.+|++|++++++|+. + +.+..+++|++|++++|++++ +| .++++++|++|++++|++.+
T Consensus        29 l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~n~i~~  102 (384)
T d2omza2          29 LGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIAD  102 (384)
T ss_dssp             TTCSSTTSEEC--HHHHTTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC
T ss_pred             hCCCCCCCccC--HHHhCCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCCC-Cc-cccCCccccccccccccccc
Confidence            33444554443  3456789999999999984 3 458889999999999999995 44 39999999999999999985


Q ss_pred             cCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcc--------------------------------
Q 048551          155 QLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSG--------------------------------  202 (409)
Q Consensus       155 ~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------------------------------  202 (409)
                      . + .++++++|+.++++++.+++..+.  .....+.......|.+..                                
T Consensus       103 i-~-~l~~l~~L~~L~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (384)
T d2omza2         103 I-T-PLANLTNLTGLTLFNNQITDIDPL--KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLE  178 (384)
T ss_dssp             C-G-GGTTCTTCCEEECCSSCCCCCGGG--TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCC
T ss_pred             c-c-cccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccchhhhhccccccc
Confidence            3 3 388999999999999998754332  223334444333322110                                


Q ss_pred             ----------cCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcC
Q 048551          203 ----------MFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQF  272 (409)
Q Consensus       203 ----------~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l  272 (409)
                                .......+++++.+++++|.+++ +++. . .+++|++|++++|.+++ + ..+..+++|+.+++++|++
T Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~-~~~~-~-~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l  253 (384)
T d2omza2         179 RLDISSNKVSDISVLAKLTNLESLIATNNQISD-ITPL-G-ILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQI  253 (384)
T ss_dssp             EEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC-CGGG-G-GCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCC
T ss_pred             cccccccccccccccccccccceeeccCCccCC-CCcc-c-ccCCCCEEECCCCCCCC-c-chhhcccccchhccccCcc
Confidence                      01134567889999999999984 4433 2 57899999999999984 3 3688999999999999999


Q ss_pred             ccccchhhh-hcccCcEEecccCCccccccccccCChhccCCCCCCccc-----------cCCCCCCCEEECcCCccccc
Q 048551          273 RGKSIWRSA-ATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLA-----------TDSLKSIEELDLSSNNLSGQ  340 (409)
Q Consensus       273 ~~~~~~~~~-l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~-----------~~~l~~L~~L~Ls~N~l~~~  340 (409)
                      ++.+.  +. .+.+ +.+++++|.+.+       ++. +..+..++.++           +..+++++.|++++|++++.
T Consensus       254 ~~~~~--~~~~~~L-~~L~l~~~~l~~-------~~~-~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l  322 (384)
T d2omza2         254 SNLAP--LSGLTKL-TELKLGANQISN-------ISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI  322 (384)
T ss_dssp             CCCGG--GTTCTTC-SEEECCSSCCCC-------CGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCC
T ss_pred             CCCCc--ccccccC-CEeeccCcccCC-------CCc-cccccccccccccccccccccccchhcccCeEECCCCCCCCC
Confidence            88652  22 3444 999999999873       221 22333333333           56788999999999999965


Q ss_pred             cchhhhcCCCCcEEEe-eccceecCCCCCCCCCCCeecccCCCCceecCC
Q 048551          341 LPRLLVNLSFLVLLNL-YNHFDGEVPTKGVFNNKTRISLAGNGKLCGGFD  389 (409)
Q Consensus       341 ~p~~~~~l~~L~~L~L-~n~l~~~~p~~~~~~~L~~L~l~~Np~l~g~~p  389 (409)
                      .  .+..+++|++|++ +|++++ ++....+++|+.|++++| .+++.+|
T Consensus       323 ~--~l~~l~~L~~L~L~~n~l~~-l~~l~~l~~L~~L~l~~N-~l~~l~~  368 (384)
T d2omza2         323 S--PVSSLTKLQRLFFANNKVSD-VSSLANLTNINWLSAGHN-QISDLTP  368 (384)
T ss_dssp             G--GGGGCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECCSS-CCCBCGG
T ss_pred             c--ccccCCCCCEEECCCCCCCC-ChhHcCCCCCCEEECCCC-cCCCChh
Confidence            3  3889999999999 777764 554467999999999999 6886654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.3e-23  Score=190.06  Aligned_cols=155  Identities=19%  Similarity=0.202  Sum_probs=97.4

Q ss_pred             cCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcE
Q 048551          113 SLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFY  192 (409)
Q Consensus       113 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  192 (409)
                      .....+.+++.+++.++ .+|+.+.  +++++|+|++|++++..+..|.++++|++|++++|+++. ++ .++.+++|++
T Consensus         7 ~~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~   81 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGT   81 (266)
T ss_dssp             ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCE
T ss_pred             cccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccc
Confidence            34555666777777777 5665553  467777777777775555667777777777777777763 33 2456677777


Q ss_pred             EEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcC
Q 048551          193 LNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQF  272 (409)
Q Consensus       193 L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l  272 (409)
                      |++++|+++...+.+..+++|+.|++++|.+. .++...+..+.++++|++++|.+++..+..+..+++++.+++++|++
T Consensus        82 L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l  160 (266)
T d1p9ag_          82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (266)
T ss_dssp             EECCSSCCSSCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             cccccccccccccccccccccccccccccccc-eeeccccccccccccccccccccceeccccccccccchhcccccccc
Confidence            77777777665545666666666666666665 33333323556666666666666644444555556666666666655


Q ss_pred             c
Q 048551          273 R  273 (409)
Q Consensus       273 ~  273 (409)
                      +
T Consensus       161 ~  161 (266)
T d1p9ag_         161 T  161 (266)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.84  E-value=9.7e-19  Score=163.23  Aligned_cols=282  Identities=27%  Similarity=0.334  Sum_probs=177.1

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC  148 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  148 (409)
                      ++++|||++++++ .+|+.   .++|++|++++|+|+ .+|..   +.+|+.|++++|.++ .++..   .+.|++|+++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEECC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh---cccccccccc
Confidence            7899999999998 78853   468999999999999 67765   468999999999988 45432   2469999999


Q ss_pred             cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCc
Q 048551          149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLP  228 (409)
Q Consensus       149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p  228 (409)
                      +|.++ .+|. ++.+++|++|+++++.+... +.   ....+..+.+..+..... ..+..++.++.+++++|... .++
T Consensus       107 ~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~~~-~~l~~l~~l~~L~l~~n~~~-~~~  178 (353)
T d1jl5a_         107 NNQLE-KLPE-LQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLEEL-PELQNLPFLTAIYADNNSLK-KLP  178 (353)
T ss_dssp             SSCCS-SCCC-CTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSC-CCCTTCTTCCEEECCSSCCS-SCC
T ss_pred             ccccc-cccc-hhhhccceeecccccccccc-cc---ccccccchhhcccccccc-ccccccccceeccccccccc-ccc
Confidence            99998 5664 67899999999999988733 32   234566677666554432 24566777778887777765 332


Q ss_pred             hHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCcccccc-------
Q 048551          229 PVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQ-------  301 (409)
Q Consensus       229 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~-------  301 (409)
                      ..    ....+.+...++.+. .++ .+..++.|+.+++++|.....+...   ..+ ..+.+..+.+.....       
T Consensus       179 ~~----~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~~~~~~---~~l-~~~~~~~~~~~~~~~~~~~l~~  248 (353)
T d1jl5a_         179 DL----PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLPDLP---PSL-EALNVRDNYLTDLPELPQSLTF  248 (353)
T ss_dssp             CC----CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCSCC---TTC-CEEECCSSCCSCCCCCCTTCCE
T ss_pred             cc----ccccccccccccccc-ccc-ccccccccccccccccccccccccc---ccc-cccccccccccccccccccccc
Confidence            21    122333444443333 222 2345556666666665544332100   001 333333333321000       


Q ss_pred             ---------ccccCChhccC--CC--CCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC
Q 048551          302 ---------NICYLPTGISN--LV--NLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK  367 (409)
Q Consensus       302 ---------~l~~ip~~~~~--l~--~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~  367 (409)
                               .+..++.....  +.  .+..+ ...+++|++|++++|+|+ .+|..   +++|+.|++ +|+++ .+|. 
T Consensus       249 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~-  321 (353)
T d1jl5a_         249 LDVSENIFSGLSELPPNLYYLNASSNEIRSL-CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPE-  321 (353)
T ss_dssp             EECCSSCCSEESCCCTTCCEEECCSSCCSEE-CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCC-
T ss_pred             cccccccccccccccchhcccccccCccccc-cccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-cccc-
Confidence                     00111111000  00  00000 234689999999999999 66743   678999999 77776 6776 


Q ss_pred             CCCCCCCeecccCCCCceecCCC
Q 048551          368 GVFNNKTRISLAGNGKLCGGFDG  390 (409)
Q Consensus       368 ~~~~~L~~L~l~~Np~l~g~~p~  390 (409)
                       .+++|++|++++|| +. .+|+
T Consensus       322 -~~~~L~~L~L~~N~-L~-~lp~  341 (353)
T d1jl5a_         322 -LPQNLKQLHVEYNP-LR-EFPD  341 (353)
T ss_dssp             -CCTTCCEEECCSSC-CS-SCCC
T ss_pred             -ccCCCCEEECcCCc-CC-CCCc
Confidence             46789999999996 65 5665

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=5.8e-19  Score=156.57  Aligned_cols=200  Identities=17%  Similarity=0.100  Sum_probs=157.3

Q ss_pred             CcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCC-cccCCCCCCcEEEee
Q 048551           70 LRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIP-AEIGNLFKLEKLSFC  148 (409)
Q Consensus        70 l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~L~  148 (409)
                      -+.++.++.+++ .+|+.+.  +++++|++++|+|+...+..|.++++|++|++++|.+...++ ..|..++.++++.+.
T Consensus        10 ~~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          10 NRVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SSEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CCEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            467788888888 7887664  589999999999996556679999999999999999876554 468889999999886


Q ss_pred             c-ccccccCCccccCCCCCcEEeCCCCCCCCCCCC-CCCCCCCCcEEEccCCcCcccCc-ccCCCC-CCcEEEeecCcCc
Q 048551          149 V-IKLTGQLPASIQNLSSHLEADSNRNNFGGKIPE-SPGQLRSLFYLNVGGNQFSGMFL-PVYNLS-SLEMIYLHDNRLN  224 (409)
Q Consensus       149 ~-n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~-~L~~L~l~~n~l~  224 (409)
                      . |.+....+..|.++++|+++++++|.+....+. .+..+..+..+..+++.+....+ .+..++ .++.+++++|+++
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             ccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence            4 677767778899999999999999998743332 23345666666777778877766 555554 7889999999998


Q ss_pred             ccCchHHhhCCCcccee-eccccccccccchhhhcCCCCCEEEcccCcCcc
Q 048551          225 GNLPPVIGAKLPNLRKI-VIALNNFTGPLPDSFSNASNRERLELSYNQFRG  274 (409)
Q Consensus       225 ~~~p~~~~~~l~~L~~L-~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  274 (409)
                       .++...+ ..++++++ ++++|+++...+..|.++++|++|++++|+++.
T Consensus       167 -~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~  215 (242)
T d1xwdc1         167 -EIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS  215 (242)
T ss_dssp             -EECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCC
T ss_pred             -ccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCc
Confidence             6777666 55666555 578888985555668999999999999999874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=9.1e-19  Score=153.87  Aligned_cols=188  Identities=22%  Similarity=0.291  Sum_probs=99.7

Q ss_pred             CCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEE
Q 048551          114 LRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYL  193 (409)
Q Consensus       114 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  193 (409)
                      .+.+|++|++.+|.++ .++ .+..+++|++|++++|.+++..  .+..+++++++++++|.++ .++ .+.++++|+++
T Consensus        39 ~l~~L~~L~l~~~~i~-~l~-~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l  112 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLK-NVS-AIAGLQSIKTL  112 (227)
T ss_dssp             HHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEE
T ss_pred             HcCCcCEEECCCCCCC-cch-hHhcCCCCcEeecCCceeeccc--ccccccccccccccccccc-ccc-ccccccccccc
Confidence            3444444444444444 221 2444444444444444444221  1444445555555544443 121 24445555555


Q ss_pred             EccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCc
Q 048551          194 NVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFR  273 (409)
Q Consensus       194 ~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  273 (409)
                      +++++...+.. .+...+.++.+.++++.+.. .+. +. .+++|++|++++|.+++..  .+.++++|+.|++++|+++
T Consensus       113 ~l~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~-~~~-~~-~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~  186 (227)
T d1h6ua2         113 DLTSTQITDVT-PLAGLSNLQVLYLDLNQITN-ISP-LA-GLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKIS  186 (227)
T ss_dssp             ECTTSCCCCCG-GGTTCTTCCEEECCSSCCCC-CGG-GG-GCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccccc-hhccccchhhhhchhhhhch-hhh-hc-cccccccccccccccccch--hhcccccceecccCCCccC
Confidence            55555544322 34445566666666666552 222 22 5667777777777766332  2667777777777777765


Q ss_pred             cccchhhhhcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcE
Q 048551          274 GKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVL  353 (409)
Q Consensus       274 ~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  353 (409)
                      +                               ++.            ++++++|++|++++|++++. + .+.++++|++
T Consensus       187 ~-------------------------------l~~------------l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~  221 (227)
T d1h6ua2         187 D-------------------------------ISP------------LASLPNLIEVHLKNNQISDV-S-PLANTSNLFI  221 (227)
T ss_dssp             C-------------------------------CGG------------GGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCE
T ss_pred             C-------------------------------Chh------------hcCCCCCCEEECcCCcCCCC-c-ccccCCCCCE
Confidence            3                               221            22346677777777777743 3 2667777777


Q ss_pred             EEeec
Q 048551          354 LNLYN  358 (409)
Q Consensus       354 L~L~n  358 (409)
                      |++.|
T Consensus       222 L~lsn  226 (227)
T d1h6ua2         222 VTLTN  226 (227)
T ss_dssp             EEEEE
T ss_pred             EEeeC
Confidence            77743

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=2.1e-18  Score=151.49  Aligned_cols=186  Identities=24%  Similarity=0.332  Sum_probs=148.6

Q ss_pred             CCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551           68 ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF  147 (409)
Q Consensus        68 ~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  147 (409)
                      .+++.|++.+|+++ .++ .+.++++|++|++++|.+++..|  +..+++|+++++++|.++ .++ .+..+++|+++++
T Consensus        41 ~~L~~L~l~~~~i~-~l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l~l  114 (227)
T d1h6ua2          41 DGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDL  114 (227)
T ss_dssp             HTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCCC-cch-hHhcCCCCcEeecCCceeecccc--cccccccccccccccccc-ccc-ccccccccccccc
Confidence            38899999999998 554 68889999999999999985443  788999999999999887 343 4778899999999


Q ss_pred             ecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccC
Q 048551          148 CVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNL  227 (409)
Q Consensus       148 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~  227 (409)
                      +++...+.  ..+...+.++.+.++++.+....  .+..+++|++|++++|.+.... .+.++++|+.|++++|+++ .+
T Consensus       115 ~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~Ls~n~l~-~l  188 (227)
T d1h6ua2         115 TSTQITDV--TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKIS-DI  188 (227)
T ss_dssp             TTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCC-CC
T ss_pred             cccccccc--chhccccchhhhhchhhhhchhh--hhccccccccccccccccccch-hhcccccceecccCCCccC-CC
Confidence            98887632  34667788889999888876433  3667788999999999887543 4778899999999999988 56


Q ss_pred             chHHhhCCCccceeeccccccccccchhhhcCCCCCEEEccc
Q 048551          228 PPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSY  269 (409)
Q Consensus       228 p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  269 (409)
                      +. +. .+++|++|++++|++++. + .++++++|+.|++++
T Consensus       189 ~~-l~-~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         189 SP-LA-SLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             GG-GG-GCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred             hh-hc-CCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEeeC
Confidence            54 44 789999999999998854 3 378899999998864

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.79  E-value=2.7e-19  Score=153.15  Aligned_cols=173  Identities=18%  Similarity=0.206  Sum_probs=125.5

Q ss_pred             CcEEEecCCCCccccCccccCCCCCCEEEccCCcccccC-CccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551           70 LRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTI-PTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC  148 (409)
Q Consensus        70 l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  148 (409)
                      .+++++++++++ .+|..+.  +++++|+|++|.|++.+ +..|.++++|++|++++|.+....+..+..+++|++|+++
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            456777888898 7887764  68999999999998644 5667889999999999999987777888888999999999


Q ss_pred             cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCc
Q 048551          149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLP  228 (409)
Q Consensus       149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p  228 (409)
                      +|+++...|..|.++++|++|+|++|++++..+..|..+++|++|++++|.+........-...++.+.+..+.++...|
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p  166 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCC
Confidence            99998766777888888888888888888777777888888888888888776543311111223444444555544444


Q ss_pred             hHHhhCCCccceeeccccccc
Q 048551          229 PVIGAKLPNLRKIVIALNNFT  249 (409)
Q Consensus       229 ~~~~~~l~~L~~L~L~~n~l~  249 (409)
                      .    .+..++.++++.|.++
T Consensus       167 ~----~l~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         167 S----KVRDVQIKDLPHSEFK  183 (192)
T ss_dssp             T----TTTTSBGGGSCTTTCC
T ss_pred             h----hhcCCEeeecCHhhCc
Confidence            3    2334445555555544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.9e-18  Score=153.20  Aligned_cols=199  Identities=16%  Similarity=0.054  Sum_probs=156.0

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccC-CccccCCCCCcEEEcC-CCcCCccCCcccCCCCCCcEEE
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTI-PTNLSLRSKLMLFFAN-RNILAGEIPAEIGNLFKLEKLS  146 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~-~n~l~~~~p~~~~~l~~L~~L~  146 (409)
                      ++++|++++|.++...+..|.++++|++|++++|.+...+ +..|.+++.++++++. .|.+....+..|.++++|++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            7899999999999544557999999999999999987654 4568899999999875 4677767777899999999999


Q ss_pred             eecccccccCC-ccccCCCCCcEEeCCCCCCCCCCCCCCCCCC-CCcEEEccCCcCcccCcccCCCCCCcEE-EeecCcC
Q 048551          147 FCVIKLTGQLP-ASIQNLSSHLEADSNRNNFGGKIPESPGQLR-SLFYLNVGGNQFSGMFLPVYNLSSLEMI-YLHDNRL  223 (409)
Q Consensus       147 L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~l~~L~~L-~l~~n~l  223 (409)
                      +++|.+....+ ..+..+..+..+...++.+....+..+.+++ .++.|++++|.++..........++..+ ++++|.+
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l  189 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNL  189 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTC
T ss_pred             cchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhcccccccccc
Confidence            99999974322 2344566677777778888766667777664 7999999999999877755566666655 4677888


Q ss_pred             cccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcc
Q 048551          224 NGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELS  268 (409)
Q Consensus       224 ~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  268 (409)
                      + .+|...+.++++|++|++++|+++...+..|.++++|+.+++.
T Consensus       190 ~-~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         190 E-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             C-CCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             c-cccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            8 8888766689999999999999995555556666666665553

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=4.3e-18  Score=147.61  Aligned_cols=163  Identities=22%  Similarity=0.348  Sum_probs=87.1

Q ss_pred             CCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeC
Q 048551           92 VRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADS  171 (409)
Q Consensus        92 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l  171 (409)
                      ..|++|++++|.+++. + .+..+++|++|++++|++++ ++ .++.+++|++|++++|+++ .+| .+..+++|+.|++
T Consensus        46 ~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEEC
T ss_pred             cCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccc-ccc-ccccccccccccc
Confidence            3455555555555422 1 24445555555555555553 22 2445555555555555554 223 3555555555555


Q ss_pred             CCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccc
Q 048551          172 NRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGP  251 (409)
Q Consensus       172 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~  251 (409)
                      ++|.+.. + ..+.++++++.+++++|.+++.. .+..+++|+.+++++|+++ .+++ +. .+++|++|++++|++++ 
T Consensus       120 ~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~-~i~~-l~-~l~~L~~L~Ls~N~i~~-  192 (210)
T d1h6ta2         120 EHNGISD-I-NGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQIS-DIVP-LA-GLTKLQNLYLSKNHISD-  192 (210)
T ss_dssp             TTSCCCC-C-GGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCB-
T ss_pred             ccccccc-c-ccccccccccccccccccccccc-ccccccccccccccccccc-cccc-cc-CCCCCCEEECCCCCCCC-
Confidence            5555442 1 23445555666666666555422 3445566666666666665 3432 33 56667777777776663 


Q ss_pred             cchhhhcCCCCCEEEcc
Q 048551          252 LPDSFSNASNRERLELS  268 (409)
Q Consensus       252 ~p~~l~~l~~L~~L~Ls  268 (409)
                      ++ .+.++++|++|+++
T Consensus       193 l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         193 LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             CG-GGTTCTTCSEEEEE
T ss_pred             Ch-hhcCCCCCCEEEcc
Confidence            33 46666777777665

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=8.5e-18  Score=144.47  Aligned_cols=162  Identities=19%  Similarity=0.280  Sum_probs=96.7

Q ss_pred             CCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEE
Q 048551           90 NLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEA  169 (409)
Q Consensus        90 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  169 (409)
                      .+.++++|++++|.++. + +.+..+++|++|++++|++++. ++ ++++++|++|++++|.+. .++ .+.+++.|+.+
T Consensus        38 ~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~-~~-l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L  111 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGL  111 (199)
T ss_dssp             HHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEE
T ss_pred             HhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCc-cc-ccCCcccccccccccccc-ccc-ccccccccccc
Confidence            34556666666666653 2 2355566666666666666632 22 566666666666666665 222 35666666666


Q ss_pred             eCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccc
Q 048551          170 DSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFT  249 (409)
Q Consensus       170 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~  249 (409)
                      +++++.+...  ..+.++++|+.|++++|.+... +.+..+++|+.|++.+|.++ .++. +. .+++|++|++++|+++
T Consensus       112 ~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~-~~l~~~~~L~~L~l~~n~l~-~l~~-l~-~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         112 TLFNNQITDI--DPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLNFSSNQVT-DLKP-LA-NLTTLERLDISSNKVS  185 (199)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCC
T ss_pred             cccccccccc--cccchhhhhHHhhhhhhhhccc-cccccccccccccccccccc-CCcc-cc-CCCCCCEEECCCCCCC
Confidence            6666665532  2355666677777776666543 34566667777777777766 4432 33 6677777777777776


Q ss_pred             cccchhhhcCCCCCEE
Q 048551          250 GPLPDSFSNASNRERL  265 (409)
Q Consensus       250 ~~~p~~l~~l~~L~~L  265 (409)
                      + ++ .++++++|++|
T Consensus       186 ~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         186 D-IS-VLAKLTNLESL  199 (199)
T ss_dssp             C-CG-GGGGCTTCSEE
T ss_pred             C-Cc-cccCCCCCCcC
Confidence            3 32 36666776654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=2.6e-18  Score=146.88  Aligned_cols=172  Identities=22%  Similarity=0.156  Sum_probs=141.1

Q ss_pred             CCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccC-CcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCC
Q 048551           94 LEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEI-PAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSN  172 (409)
Q Consensus        94 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  172 (409)
                      .++++.++++++ .+|..+.  +.+++|++++|+|++.+ +..|..+++|++|++++|.+....+..+..+++|++|+++
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            468999999999 7787663  68999999999998644 4568899999999999999998888899999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccc
Q 048551          173 RNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGP  251 (409)
Q Consensus       173 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~  251 (409)
                      +|++++..+..|.++++|++|+|++|.++++.+ .|..+++|+++++++|.+.......+.  ...++.+.+..+.++..
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~--~~~l~~~~l~~~~~~c~  164 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF--AEWLRKKSLNGGAARCG  164 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH--HHHHHHHCCSGGGCBBC
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHH--hhhhhhhcccCCCeEeC
Confidence            999998888889999999999999999999888 788999999999999998854443332  23466777778877766


Q ss_pred             cchhhhcCCCCCEEEcccCcCc
Q 048551          252 LPDSFSNASNRERLELSYNQFR  273 (409)
Q Consensus       252 ~p~~l~~l~~L~~L~Ls~N~l~  273 (409)
                      .|..+   ..++.++++.|.++
T Consensus       165 ~p~~l---~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         165 APSKV---RDVQIKDLPHSEFK  183 (192)
T ss_dssp             SSTTT---TTSBGGGSCTTTCC
T ss_pred             CChhh---cCCEeeecCHhhCc
Confidence            66544   44556667776664

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=1.4e-17  Score=144.26  Aligned_cols=163  Identities=21%  Similarity=0.287  Sum_probs=140.1

Q ss_pred             CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551           69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC  148 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  148 (409)
                      ++++|++++|.++ .++ .+..+++|++|++++|++++..  .++.+++|++|++++|++++ +| .+..+++|+.|+++
T Consensus        47 ~L~~L~l~~~~i~-~l~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred             CccEEECcCCCCC-Cch-hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccccc
Confidence            7999999999998 444 4888999999999999999643  36889999999999999984 55 58889999999999


Q ss_pred             cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCc
Q 048551          149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLP  228 (409)
Q Consensus       149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p  228 (409)
                      +|.+. . ...+..++.++.+++++|.+++.  ..+..+++|+++++++|.+++.. .+.++++|++|++++|.++ .++
T Consensus       121 ~~~~~-~-~~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i~-~l~~l~~L~~L~Ls~N~i~-~l~  194 (210)
T d1h6ta2         121 HNGIS-D-INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHIS-DLR  194 (210)
T ss_dssp             TSCCC-C-CGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCC-BCG
T ss_pred             ccccc-c-ccccccccccccccccccccccc--ccccccccccccccccccccccc-cccCCCCCCEEECCCCCCC-CCh
Confidence            99987 3 34688999999999999998742  35678899999999999998754 5889999999999999998 676


Q ss_pred             hHHhhCCCccceeeccc
Q 048551          229 PVIGAKLPNLRKIVIAL  245 (409)
Q Consensus       229 ~~~~~~l~~L~~L~L~~  245 (409)
                       .+. .+++|++|++++
T Consensus       195 -~l~-~l~~L~~L~Ls~  209 (210)
T d1h6ta2         195 -ALA-GLKNLDVLELFS  209 (210)
T ss_dssp             -GGT-TCTTCSEEEEEE
T ss_pred             -hhc-CCCCCCEEEccC
Confidence             455 899999999874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=5.1e-17  Score=139.52  Aligned_cols=161  Identities=25%  Similarity=0.394  Sum_probs=136.9

Q ss_pred             cCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEE
Q 048551           67 CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS  146 (409)
Q Consensus        67 c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  146 (409)
                      ..++++|++++|+++ .++ .+..+++|++|++++|++++..+  +.++++|++|++++|.+. .++ .++++++|++|+
T Consensus        39 l~~l~~L~l~~~~i~-~l~-~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEE
T ss_pred             hcCCCEEECCCCCCC-Ccc-ccccCCCcCcCccccccccCccc--ccCCcccccccccccccc-ccc-cccccccccccc
Confidence            348999999999998 454 58899999999999999996443  899999999999999988 444 488999999999


Q ss_pred             eecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCccc
Q 048551          147 FCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGN  226 (409)
Q Consensus       147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~  226 (409)
                      ++++.+..  ...+..+++|+.|++++|++.. ++ .+..+++|++|++.+|.+++.. .+.++++|+.|++++|+++ .
T Consensus       113 l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~ls~N~i~-~  186 (199)
T d2omxa2         113 LFNNQITD--IDPLKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLDISSNKVS-D  186 (199)
T ss_dssp             CCSSCCCC--CGGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCC-C
T ss_pred             cccccccc--ccccchhhhhHHhhhhhhhhcc-cc-cccccccccccccccccccCCc-cccCCCCCCEEECCCCCCC-C
Confidence            99998874  3458899999999999999873 33 5788999999999999998754 5889999999999999998 6


Q ss_pred             CchHHhhCCCcccee
Q 048551          227 LPPVIGAKLPNLRKI  241 (409)
Q Consensus       227 ~p~~~~~~l~~L~~L  241 (409)
                      ++ .+. .+++|++|
T Consensus       187 i~-~l~-~L~~L~~L  199 (199)
T d2omxa2         187 IS-VLA-KLTNLESL  199 (199)
T ss_dssp             CG-GGG-GCTTCSEE
T ss_pred             Cc-ccc-CCCCCCcC
Confidence            65 355 78888875

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.71  E-value=2.3e-15  Score=139.87  Aligned_cols=258  Identities=23%  Similarity=0.258  Sum_probs=159.2

Q ss_pred             CCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551           68 ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF  147 (409)
Q Consensus        68 ~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  147 (409)
                      .++++|++++|+|+ .+|+.+   .+|+.|++++|.++ .++..   .+.|++|++++|.++ .+|. ++.+++|++|++
T Consensus        58 ~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l  127 (353)
T d1jl5a_          58 PHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSDL---PPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDV  127 (353)
T ss_dssp             TTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCSC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEEC
T ss_pred             CCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhhh---ccccccccccccccc-cccc-hhhhccceeecc
Confidence            38999999999999 788654   58999999999998 44431   246999999999998 5664 678999999999


Q ss_pred             ecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-------------------ccC
Q 048551          148 CVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-------------------PVY  208 (409)
Q Consensus       148 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------------~~~  208 (409)
                      +++.+.. .+..   ...+..+.+.++...  ....+..++.++.+++++|.......                   ...
T Consensus       128 ~~~~~~~-~~~~---~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  201 (353)
T d1jl5a_         128 DNNSLKK-LPDL---PPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQ  201 (353)
T ss_dssp             CSSCCSC-CCCC---CTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCT
T ss_pred             ccccccc-cccc---cccccchhhcccccc--ccccccccccceeccccccccccccccccccccccccccccccccccc
Confidence            9998873 3332   344555665554443  23345666777777777665544321                   233


Q ss_pred             CCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccch----------
Q 048551          209 NLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIW----------  278 (409)
Q Consensus       209 ~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~----------  278 (409)
                      .++.|+.+++++|... .++.    ...++..+.+.++.+... +.   ....+...++..+.+.+....          
T Consensus       202 ~l~~L~~l~l~~n~~~-~~~~----~~~~l~~~~~~~~~~~~~-~~---~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~  272 (353)
T d1jl5a_         202 NLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYLTDL-PE---LPQSLTFLDVSENIFSGLSELPPNLYYLNAS  272 (353)
T ss_dssp             TCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSEESCCCTTCCEEECC
T ss_pred             cccccccccccccccc-cccc----cccccccccccccccccc-cc---ccccccccccccccccccccccchhcccccc
Confidence            4455566666655544 3332    223444455555544321 11   112333333333333221100          


Q ss_pred             -----hhh--hcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCC
Q 048551          279 -----RSA--ATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFL  351 (409)
Q Consensus       279 -----~~~--l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  351 (409)
                           ...  .+++ ++|++++|+++       .+|..              +++|+.|++++|+|+ .+|..   +++|
T Consensus       273 ~~~~~~~~~~~~~L-~~L~Ls~N~l~-------~lp~~--------------~~~L~~L~L~~N~L~-~l~~~---~~~L  326 (353)
T d1jl5a_         273 SNEIRSLCDLPPSL-EELNVSNNKLI-------ELPAL--------------PPRLERLIASFNHLA-EVPEL---PQNL  326 (353)
T ss_dssp             SSCCSEECCCCTTC-CEEECCSSCCS-------CCCCC--------------CTTCCEEECCSSCCS-CCCCC---CTTC
T ss_pred             cCccccccccCCCC-CEEECCCCccC-------ccccc--------------cCCCCEEECCCCcCC-ccccc---cCCC
Confidence                 000  1223 66666666665       45532              478899999999999 56653   5689


Q ss_pred             cEEEe-eccceecCCCCCCCCCCCeeccc
Q 048551          352 VLLNL-YNHFDGEVPTKGVFNNKTRISLA  379 (409)
Q Consensus       352 ~~L~L-~n~l~~~~p~~~~~~~L~~L~l~  379 (409)
                      ++|++ +|++. .+|.  ...+|+.|.+.
T Consensus       327 ~~L~L~~N~L~-~lp~--~~~~L~~L~~~  352 (353)
T d1jl5a_         327 KQLHVEYNPLR-EFPD--IPESVEDLRMN  352 (353)
T ss_dssp             CEEECCSSCCS-SCCC--CCTTCCEEECC
T ss_pred             CEEECcCCcCC-CCCc--cccccCeeECc
Confidence            99999 78765 6776  34567777653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.5e-18  Score=165.90  Aligned_cols=108  Identities=19%  Similarity=0.214  Sum_probs=53.1

Q ss_pred             CCcEEEecCCCCccc-cCccccCCCCCCEEEccCCccccc----CCccccCCCCCcEEEcCCCcCCcc----CCcccC-C
Q 048551           69 SLRFINIADNGVQGE-IPNELGNLVRLEKLILANNSFSGT----IPTNLSLRSKLMLFFANRNILAGE----IPAEIG-N  138 (409)
Q Consensus        69 ~l~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~-~  138 (409)
                      +|+.||++++++++. +.+.+..++++++|+|++|.++..    +...+..+++|++|++++|.+++.    +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            355566666666532 122334455566666666655521    233344555666666666655421    111121 1


Q ss_pred             CCCCcEEEeeccccccc----CCccccCCCCCcEEeCCCCCC
Q 048551          139 LFKLEKLSFCVIKLTGQ----LPASIQNLSSHLEADSNRNNF  176 (409)
Q Consensus       139 l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l  176 (409)
                      ..+|++|++++|+++..    ++..+..+++|++|++++|.+
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccc
Confidence            23566666666655432    233444555666666665554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.8e-17  Score=157.51  Aligned_cols=300  Identities=15%  Similarity=0.120  Sum_probs=188.5

Q ss_pred             CCcEEEecCCCCcc----ccCccccCCCCCCEEEccCCccccc----CCcccc-CCCCCcEEEcCCCcCCcc----CCcc
Q 048551           69 SLRFINIADNGVQG----EIPNELGNLVRLEKLILANNSFSGT----IPTNLS-LRSKLMLFFANRNILAGE----IPAE  135 (409)
Q Consensus        69 ~l~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~~~-~l~~L~~L~l~~n~l~~~----~p~~  135 (409)
                      ++++|+|++|+++.    .+...+..+++|++|+|++|.|++.    +...+. ...+|++|++++|.+++.    ++..
T Consensus        28 ~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~  107 (460)
T d1z7xw1          28 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST  107 (460)
T ss_dssp             TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             CCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccch
Confidence            67788888888763    2445567778888888888887632    122222 234688888888887643    3455


Q ss_pred             cCCCCCCcEEEeecccccccCCc---------------------------------cccCCCCCcEEeCCCCCCCCC---
Q 048551          136 IGNLFKLEKLSFCVIKLTGQLPA---------------------------------SIQNLSSHLEADSNRNNFGGK---  179 (409)
Q Consensus       136 ~~~l~~L~~L~L~~n~l~~~~p~---------------------------------~l~~l~~L~~L~l~~n~l~~~---  179 (409)
                      +..+++|++|++++|.+......                                 .+.....++.++++++.....   
T Consensus       108 l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~  187 (460)
T d1z7xw1         108 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVR  187 (460)
T ss_dssp             TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             hhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccccccccccccccccccccccccccccc
Confidence            66778888888888776421000                                 011223455555554432200   


Q ss_pred             -----------------------CC-------CCCCCCCCCcEEEccCCcCccc-----Cc-ccCCCCCCcEEEeecCcC
Q 048551          180 -----------------------IP-------ESPGQLRSLFYLNVGGNQFSGM-----FL-PVYNLSSLEMIYLHDNRL  223 (409)
Q Consensus       180 -----------------------~~-------~~~~~l~~L~~L~l~~n~l~~~-----~~-~~~~l~~L~~L~l~~n~l  223 (409)
                                             ..       ..+...+.++.+++++|.+...     .. .......++.+++++|.+
T Consensus       188 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i  267 (460)
T d1z7xw1         188 VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI  267 (460)
T ss_dssp             HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             ccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhcccccccccccccccccccc
Confidence                                   00       0122346788999998876432     11 344567899999999988


Q ss_pred             cccC----chHHhhCCCccceeeccccccccccchhh-----hcCCCCCEEEcccCcCccccchhhh-----hcccCcEE
Q 048551          224 NGNL----PPVIGAKLPNLRKIVIALNNFTGPLPDSF-----SNASNRERLELSYNQFRGKSIWRSA-----ATSYSQRL  289 (409)
Q Consensus       224 ~~~~----p~~~~~~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~~~~~~~-----l~~l~~~L  289 (409)
                      ....    ...+. ..+.++.+++++|.+++.....+     .....|+.+++++|.++......+.     ..++ ++|
T Consensus       268 ~~~~~~~~~~~l~-~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L-~~L  345 (460)
T d1z7xw1         268 TAKGCGDLCRVLR-AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL-LEL  345 (460)
T ss_dssp             CHHHHHHHHHHHH-HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSC-CEE
T ss_pred             ccccccccccccc-ccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccch-hhh
Confidence            7432    22333 57889999999999875433322     2346899999999998876533322     2245 999


Q ss_pred             ecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCCccccc----cchhhhcCCCCcEEEe-eccceecC
Q 048551          290 NDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQ----LPRLLVNLSFLVLLNL-YNHFDGEV  364 (409)
Q Consensus       290 ~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L-~n~l~~~~  364 (409)
                      ++++|.++..  .+..++..+.          ...+.|++|+|++|+|++.    ++..+...++|++|++ +|++....
T Consensus       346 ~Ls~N~i~~~--g~~~l~~~l~----------~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g  413 (460)
T d1z7xw1         346 QISNNRLEDA--GVRELCQGLG----------QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG  413 (460)
T ss_dssp             ECCSSBCHHH--HHHHHHHHHT----------STTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHH
T ss_pred             heeeecccCc--ccchhhhhhh----------cccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHH
Confidence            9999988620  0011222221          2246789999999999853    4456777899999999 88876421


Q ss_pred             CCC------CCCCCCCeecccCCC
Q 048551          365 PTK------GVFNNKTRISLAGNG  382 (409)
Q Consensus       365 p~~------~~~~~L~~L~l~~Np  382 (409)
                      ...      .....|+.|++.+|.
T Consensus       414 ~~~l~~~l~~~~~~L~~l~l~~~~  437 (460)
T d1z7xw1         414 ILQLVESVRQPGCLLEQLVLYDIY  437 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTCC
T ss_pred             HHHHHHHHHhCCCccCEEECCCCC
Confidence            110      133479999999984

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=9e-15  Score=115.00  Aligned_cols=100  Identities=19%  Similarity=0.304  Sum_probs=44.1

Q ss_pred             EEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeeccc
Q 048551           72 FINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIK  151 (409)
Q Consensus        72 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~  151 (409)
                      .|++++|+++ .++ .+..+++|++|++++|+|+ .+|..+..+++|++|++++|.++ .+| .++.+++|++|++++|+
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCc
Confidence            4455555554 333 2444455555555555554 33444444445555555555444 222 24444444444444444


Q ss_pred             ccccC-CccccCCCCCcEEeCCCCCC
Q 048551          152 LTGQL-PASIQNLSSHLEADSNRNNF  176 (409)
Q Consensus       152 l~~~~-p~~l~~l~~L~~L~l~~n~l  176 (409)
                      ++... ...+..+++|++|++++|++
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcC
Confidence            44211 12333444444444444443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=1.1e-14  Score=114.44  Aligned_cols=102  Identities=21%  Similarity=0.188  Sum_probs=53.1

Q ss_pred             CEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCC
Q 048551           95 EKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRN  174 (409)
Q Consensus        95 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n  174 (409)
                      |+|++++|+++ .++ .+..+++|++|++++|+++ .+|+.++.+++|++|++++|.++ .+| .++.+++|++|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCC
Confidence            45666666665 333 2555666666666666665 45555555666666666666555 222 3555555555555555


Q ss_pred             CCCCCCC-CCCCCCCCCcEEEccCCcCc
Q 048551          175 NFGGKIP-ESPGQLRSLFYLNVGGNQFS  201 (409)
Q Consensus       175 ~l~~~~~-~~~~~l~~L~~L~l~~n~l~  201 (409)
                      ++++... ..+..+++|++|++++|.++
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            5542211 23344444555555544443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.6e-15  Score=137.38  Aligned_cols=126  Identities=9%  Similarity=0.089  Sum_probs=65.9

Q ss_pred             cEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCcc-CCcccCCCCCCcEEEeec
Q 048551           71 RFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGE-IPAEIGNLFKLEKLSFCV  149 (409)
Q Consensus        71 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~L~~  149 (409)
                      +++|++++.+.......+.. ..+..+.++...+...... .....+|++||++++.+++. ++..+..+++|++|++++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~~-~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeeccccccccchhh-hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            46778877765332222211 2345566655554422222 23445677777777666533 233356667777777777


Q ss_pred             ccccccCCccccCCCCCcEEeCCCC-CCCCC-CCCCCCCCCCCcEEEccCC
Q 048551          150 IKLTGQLPASIQNLSSHLEADSNRN-NFGGK-IPESPGQLRSLFYLNVGGN  198 (409)
Q Consensus       150 n~l~~~~p~~l~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n  198 (409)
                      +.+++..+..++.+++|++|+++++ .+++. +......+++|++|+++++
T Consensus        81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c  131 (284)
T d2astb2          81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC  131 (284)
T ss_dssp             CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccc
Confidence            7666555556666666666666663 33311 0111123455555555553

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5.5e-15  Score=122.03  Aligned_cols=39  Identities=18%  Similarity=0.041  Sum_probs=15.7

Q ss_pred             CCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCC
Q 048551           90 NLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILA  129 (409)
Q Consensus        90 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  129 (409)
                      +..++++|+|++|+|+ .++..+..+++|++|++++|.++
T Consensus        16 n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~   54 (162)
T d1a9na_          16 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR   54 (162)
T ss_dssp             CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC
T ss_pred             CcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC
Confidence            3334444444444444 22332333444444444444443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5.3e-15  Score=122.13  Aligned_cols=127  Identities=16%  Similarity=0.076  Sum_probs=76.7

Q ss_pred             ccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCc
Q 048551          112 LSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLF  191 (409)
Q Consensus       112 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  191 (409)
                      +.+..++++|++++|+|+ .++..+..+++|++|++++|.++ .++ .+..+++|++|++++|+++...+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccc
Confidence            445566666777777666 44554555666777777776666 332 366666667777777766644333345566677


Q ss_pred             EEEccCCcCcccCc--ccCCCCCCcEEEeecCcCcccCch---HHhhCCCccceee
Q 048551          192 YLNVGGNQFSGMFL--PVYNLSSLEMIYLHDNRLNGNLPP---VIGAKLPNLRKIV  242 (409)
Q Consensus       192 ~L~l~~n~l~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~---~~~~~l~~L~~L~  242 (409)
                      +|++++|.+.....  .+..+++|+.+++++|.++ ..|.   .+...+++|+.||
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             cceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence            77777766665432  4556667777777777665 4442   1222567777665

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.4e-15  Score=135.22  Aligned_cols=221  Identities=15%  Similarity=0.143  Sum_probs=148.6

Q ss_pred             CEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeeccccccc-CCccccCCCCCcEEeCCC
Q 048551           95 EKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQ-LPASIQNLSSHLEADSNR  173 (409)
Q Consensus        95 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~l~~  173 (409)
                      +++|++++.+.......+.. ..+..+.+....+.... .......+|++|+++++.++.. +...+..+++|++|++++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            57889888775332222221 23556677666555222 2234556899999999988743 344577889999999999


Q ss_pred             CCCCCCCCCCCCCCCCCcEEEccCC-cCcccC-c-ccCCCCCCcEEEeecCc-Cccc-CchHHhhCCCccceeecccc--
Q 048551          174 NNFGGKIPESPGQLRSLFYLNVGGN-QFSGMF-L-PVYNLSSLEMIYLHDNR-LNGN-LPPVIGAKLPNLRKIVIALN--  246 (409)
Q Consensus       174 n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~-~~~~l~~L~~L~l~~n~-l~~~-~p~~~~~~l~~L~~L~L~~n--  246 (409)
                      +.+++..+..++++++|++|+++++ .++... . ....+++|++|+++++. ++.. +...+....++|+.|+++++  
T Consensus        81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  160 (284)
T d2astb2          81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK  160 (284)
T ss_dssp             CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred             cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccc
Confidence            9988776777888899999999985 454321 1 23467899999999863 4322 22334434578999999875  


Q ss_pred             ccccc-cchhhhcCCCCCEEEcccCc-CccccchhhhhcccCcEEecccCCccccccccccCChhccCCCCCCccccCCC
Q 048551          247 NFTGP-LPDSFSNASNRERLELSYNQ-FRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSL  324 (409)
Q Consensus       247 ~l~~~-~p~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l  324 (409)
                      .++.. +.....++++|++|++++|. +++.                              ....+           ..+
T Consensus       161 ~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~------------------------------~~~~l-----------~~~  199 (284)
T d2astb2         161 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKND------------------------------CFQEF-----------FQL  199 (284)
T ss_dssp             GSCHHHHHHHHHHCTTCSEEECTTCTTCCGG------------------------------GGGGG-----------GGC
T ss_pred             ccccccccccccccccccccccccccCCCch------------------------------hhhhh-----------ccc
Confidence            34432 33344678899999998864 4431                              12222           234


Q ss_pred             CCCCEEECcC-CccccccchhhhcCCCCcEEEe-ec
Q 048551          325 KSIEELDLSS-NNLSGQLPRLLVNLSFLVLLNL-YN  358 (409)
Q Consensus       325 ~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L-~n  358 (409)
                      ++|++|++++ +.+++.....+.++++|++|++ ++
T Consensus       200 ~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         200 NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            7789999998 4687777777888999999999 54

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.51  E-value=1.8e-15  Score=140.89  Aligned_cols=191  Identities=13%  Similarity=0.106  Sum_probs=105.0

Q ss_pred             cCccccCCCCCCEEEccCCccccc----CCccccCCCCCcEEEcCCCcCCc---c-------CCcccCCCCCCcEEEeec
Q 048551           84 IPNELGNLVRLEKLILANNSFSGT----IPTNLSLRSKLMLFFANRNILAG---E-------IPAEIGNLFKLEKLSFCV  149 (409)
Q Consensus        84 ~p~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~---~-------~p~~~~~l~~L~~L~L~~  149 (409)
                      +...+.....++.|+|++|.+...    +...+...+.|+.++++++....   .       +...+...++|++|++++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            334455566777777777766532    22344556677777776654331   1       112234556677777777


Q ss_pred             cccccc----CCccccCCCCCcEEeCCCCCCCCCCCC-------------CCCCCCCCcEEEccCCcCcccCc-----cc
Q 048551          150 IKLTGQ----LPASIQNLSSHLEADSNRNNFGGKIPE-------------SPGQLRSLFYLNVGGNQFSGMFL-----PV  207 (409)
Q Consensus       150 n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~~~~-------------~~~~l~~L~~L~l~~n~l~~~~~-----~~  207 (409)
                      |.+...    +...+...++|++|++++|.+......             .....+.|+.+++++|.+.....     .+
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l  182 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  182 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             cccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchh
Confidence            766542    223344556677777776665311000             01234566777777766643221     23


Q ss_pred             CCCCCCcEEEeecCcCccc-----CchHHhhCCCccceeeccccccccc----cchhhhcCCCCCEEEcccCcCccc
Q 048551          208 YNLSSLEMIYLHDNRLNGN-----LPPVIGAKLPNLRKIVIALNNFTGP----LPDSFSNASNRERLELSYNQFRGK  275 (409)
Q Consensus       208 ~~l~~L~~L~l~~n~l~~~-----~p~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~  275 (409)
                      ...+.|+.|++++|.++..     +...+. ..++|+.|++++|.++..    +...+..+++|++|++++|.+++.
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~-~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~  258 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLA-YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR  258 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGG-GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred             hhhhhhcccccccccccccccccchhhhhc-chhhhcccccccccccccccccccccccccccchhhhhhcCccCch
Confidence            4556677777777766521     111222 456677777777766532    233456667777777777777654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.48  E-value=6.2e-15  Score=137.21  Aligned_cols=228  Identities=17%  Similarity=0.139  Sum_probs=162.9

Q ss_pred             CCCcEEEecCCCCccc----cCccccCCCCCCEEEccCCccccc----------CCccccCCCCCcEEEcCCCcCCcc--
Q 048551           68 ASLRFINIADNGVQGE----IPNELGNLVRLEKLILANNSFSGT----------IPTNLSLRSKLMLFFANRNILAGE--  131 (409)
Q Consensus        68 ~~l~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----------~~~~~~~l~~L~~L~l~~n~l~~~--  131 (409)
                      ..+++|+|++|.+...    +...+...++|+.++++++.....          +...+...++|++|++++|.++..  
T Consensus        31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  110 (344)
T d2ca6a1          31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  110 (344)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccc
Confidence            3799999999988643    444677889999999998755321          123346678999999999998754  


Q ss_pred             --CCcccCCCCCCcEEEeecccccccCCcc-------------ccCCCCCcEEeCCCCCCCCCC----CCCCCCCCCCcE
Q 048551          132 --IPAEIGNLFKLEKLSFCVIKLTGQLPAS-------------IQNLSSHLEADSNRNNFGGKI----PESPGQLRSLFY  192 (409)
Q Consensus       132 --~p~~~~~l~~L~~L~L~~n~l~~~~p~~-------------l~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~  192 (409)
                        +...+...++|++|++++|.+.......             ....+.|+.+.+++|.+....    ...+...+.|++
T Consensus       111 ~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~  190 (344)
T d2ca6a1         111 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  190 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             cchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcc
Confidence              2334556789999999999875321111             134678999999999886322    223445688999


Q ss_pred             EEccCCcCccc-----Cc-ccCCCCCCcEEEeecCcCccc----CchHHhhCCCccceeeccccccccccchh----hhc
Q 048551          193 LNVGGNQFSGM-----FL-PVYNLSSLEMIYLHDNRLNGN----LPPVIGAKLPNLRKIVIALNNFTGPLPDS----FSN  258 (409)
Q Consensus       193 L~l~~n~l~~~-----~~-~~~~l~~L~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~~p~~----l~~  258 (409)
                      |++++|.+...     .. .+...++|+.|++++|.++..    +...+. ..++|++|++++|.+++.....    +..
T Consensus       191 L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~-~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~  269 (344)
T d2ca6a1         191 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK-SWPNLRELGLNDCLLSARGAAAVVDAFSK  269 (344)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG-GCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred             cccccccccccccccchhhhhcchhhhccccccccccccccccccccccc-ccccchhhhhhcCccCchhhHHHHHHhhh
Confidence            99999998642     11 466788999999999998633    334444 6789999999999998543333    333


Q ss_pred             --CCCCCEEEcccCcCccccchhhh------hcccCcEEecccCCcc
Q 048551          259 --ASNRERLELSYNQFRGKSIWRSA------ATSYSQRLNDDDQNHH  297 (409)
Q Consensus       259 --l~~L~~L~Ls~N~l~~~~~~~~~------l~~l~~~L~l~~n~l~  297 (409)
                        ...|++|++++|+++...+..+.      .+.+ +.|++++|.+.
T Consensus       270 ~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L-~~L~l~~N~~~  315 (344)
T d2ca6a1         270 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL-LFLELNGNRFS  315 (344)
T ss_dssp             CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTC-CEEECTTSBSC
T ss_pred             ccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCC-CEEECCCCcCC
Confidence              46799999999999875422221      2234 89999999986

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.35  E-value=1.2e-14  Score=124.14  Aligned_cols=126  Identities=17%  Similarity=0.267  Sum_probs=61.0

Q ss_pred             ccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCc
Q 048551          135 EIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLE  214 (409)
Q Consensus       135 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~  214 (409)
                      .+..+++|++|++++|+++ .++ .+..+++|++|++++|.++ .+|.....+++|++|++++|.++.. +.+..+++|+
T Consensus        43 sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l-~~~~~l~~L~  118 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-SGIEKLVNLR  118 (198)
T ss_dssp             HHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH-HHHHHHHHSS
T ss_pred             HHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc-cccccccccc
Confidence            3444444444444444444 222 2444444444444444443 2222222233455555555555443 2344555666


Q ss_pred             EEEeecCcCcccCch--HHhhCCCccceeeccccccccccch----------hhhcCCCCCEEE
Q 048551          215 MIYLHDNRLNGNLPP--VIGAKLPNLRKIVIALNNFTGPLPD----------SFSNASNRERLE  266 (409)
Q Consensus       215 ~L~l~~n~l~~~~p~--~~~~~l~~L~~L~L~~n~l~~~~p~----------~l~~l~~L~~L~  266 (409)
                      .|++++|+++ .++.  .+. .+++|+.|++++|++....+.          .+..+++|+.||
T Consensus       119 ~L~L~~N~i~-~~~~~~~l~-~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         119 VLYMSNNKIT-NWGEIDKLA-ALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EEEESEEECC-CHHHHHHHT-TTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccchhc-ccccccccc-CCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            6666666665 3332  233 566666666666665533222          145677777765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.34  E-value=4.8e-15  Score=126.63  Aligned_cols=128  Identities=19%  Similarity=0.177  Sum_probs=87.8

Q ss_pred             CcEEEecCC--CCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551           70 LRFINIADN--GVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF  147 (409)
Q Consensus        70 l~~L~L~~n--~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  147 (409)
                      .+.+++.+.  .+. .++..+..+++|++|+|++|+|+. ++ .+..+++|++|++++|.++ .+|..+..+++|++|++
T Consensus        25 ~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l  100 (198)
T d1m9la_          25 AEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWI  100 (198)
T ss_dssp             CSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEEC
T ss_pred             cceeeeecccCchh-hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccc
Confidence            344555443  233 456678888888999998888884 44 4778888888888888887 56655555567888888


Q ss_pred             ecccccccCCccccCCCCCcEEeCCCCCCCCCCC-CCCCCCCCCcEEEccCCcCccc
Q 048551          148 CVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIP-ESPGQLRSLFYLNVGGNQFSGM  203 (409)
Q Consensus       148 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~  203 (409)
                      ++|.++. + +.+..+++|++|++++|+++.... ..+..+++|++|++++|++...
T Consensus       101 ~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         101 SYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             SEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             ccccccc-c-ccccccccccccccccchhccccccccccCCCccceeecCCCccccC
Confidence            8888873 3 346677778888888777763211 2456667777777777766544

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=4e-12  Score=103.82  Aligned_cols=105  Identities=15%  Similarity=0.047  Sum_probs=63.1

Q ss_pred             CcEEEecCCCCccccCccccCCCCCCEEEccCC-cccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551           70 LRFINIADNGVQGEIPNELGNLVRLEKLILANN-SFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC  148 (409)
Q Consensus        70 l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  148 (409)
                      .+.++++++++. ..|..+..+++|++|++++| .++...+..|.++++|+.|++++|+++...+..|..+++|++|+|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            344556666666 56666777777777777655 4664445556666777777777776665445556666666666666


Q ss_pred             cccccccCCccccCCCCCcEEeCCCCCC
Q 048551          149 VIKLTGQLPASIQNLSSHLEADSNRNNF  176 (409)
Q Consensus       149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l  176 (409)
                      +|+++ .+|.......+|+.|++++|.+
T Consensus        89 ~N~l~-~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          89 FNALE-SLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             SSCCS-CCCSTTTCSCCCCEEECCSSCC
T ss_pred             CCCCc-ccChhhhccccccccccCCCcc
Confidence            66666 3333322223455555555544

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=9.1e-12  Score=101.60  Aligned_cols=106  Identities=14%  Similarity=0.024  Sum_probs=56.2

Q ss_pred             CCCEEEccCCcccccCCccccCCCCCcEEEcCCC-cCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeC
Q 048551           93 RLEKLILANNSFSGTIPTNLSLRSKLMLFFANRN-ILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADS  171 (409)
Q Consensus        93 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l  171 (409)
                      ..+.++.+++.++ ..|..+..+++|++|++++| .++..-+..|.++++|+.|++++|+++...+..|..+++|++|++
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            3445666666665 44555555666666666544 355333344555666666666666665444555555666666666


Q ss_pred             CCCCCCCCCCCCCCCCCCCcEEEccCCcC
Q 048551          172 NRNNFGGKIPESPGQLRSLFYLNVGGNQF  200 (409)
Q Consensus       172 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  200 (409)
                      ++|+++...+..+. ..+|++|++++|.+
T Consensus        88 s~N~l~~l~~~~~~-~~~l~~L~L~~Np~  115 (156)
T d2ifga3          88 SFNALESLSWKTVQ-GLSLQELVLSGNPL  115 (156)
T ss_dssp             CSSCCSCCCSTTTC-SCCCCEEECCSSCC
T ss_pred             cCCCCcccChhhhc-cccccccccCCCcc
Confidence            66665522222222 22455555555544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=6.1e-09  Score=84.96  Aligned_cols=103  Identities=12%  Similarity=-0.020  Sum_probs=52.0

Q ss_pred             CCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCcc--CCcccCCCCCCcEEEeecccccccCCccccCCCCCcE
Q 048551           91 LVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGE--IPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLE  168 (409)
Q Consensus        91 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  168 (409)
                      +..+..++..++... .++..+..++.|++|++++|+++..  ++..+..+++|++|++++|.++..-+-.......|+.
T Consensus        41 ~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~  119 (162)
T d1koha1          41 QNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE  119 (162)
T ss_dssp             TTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSS
T ss_pred             ccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccce
Confidence            333444444433332 2333334566677777777766632  1233455666777777777666322212223345666


Q ss_pred             EeCCCCCCCCCCCCC-------CCCCCCCcEEE
Q 048551          169 ADSNRNNFGGKIPES-------PGQLRSLFYLN  194 (409)
Q Consensus       169 L~l~~n~l~~~~~~~-------~~~l~~L~~L~  194 (409)
                      +++++|++.......       +..+|+|+.||
T Consensus       120 L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         120 LWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             CCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             eecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            667776665433221       33455565554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=1.2e-08  Score=83.06  Aligned_cols=43  Identities=19%  Similarity=0.193  Sum_probs=19.4

Q ss_pred             ccCCCCCcEEeCCCCCCCCCC--CCCCCCCCCCcEEEccCCcCcc
Q 048551          160 IQNLSSHLEADSNRNNFGGKI--PESPGQLRSLFYLNVGGNQFSG  202 (409)
Q Consensus       160 l~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~  202 (409)
                      ...+++|++|++++|+++..-  +..+..+++|+.|++++|.++.
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~  105 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS  105 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCC
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcccc
Confidence            344556666666666655321  1122233444444444444443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.68  E-value=7.5e-06  Score=66.37  Aligned_cols=84  Identities=19%  Similarity=0.162  Sum_probs=45.1

Q ss_pred             CCcEEEecCC-CCccc----cCccccCCCCCCEEEccCCcccccCC----ccccCCCCCcEEEcCCCcCCcc----CCcc
Q 048551           69 SLRFINIADN-GVQGE----IPNELGNLVRLEKLILANNSFSGTIP----TNLSLRSKLMLFFANRNILAGE----IPAE  135 (409)
Q Consensus        69 ~l~~L~L~~n-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~----~p~~  135 (409)
                      ++++|+|+++ .++..    +-..+...+.|++|+|++|.+.....    ..+...+.|++|++++|.+++.    +-..
T Consensus        16 ~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~a   95 (167)
T d1pgva_          16 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS   95 (167)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred             CCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHH
Confidence            5677777653 35422    23345556667777777776653222    2233455666666666666532    1123


Q ss_pred             cCCCCCCcEEEeecccc
Q 048551          136 IGNLFKLEKLSFCVIKL  152 (409)
Q Consensus       136 ~~~l~~L~~L~L~~n~l  152 (409)
                      +...++|++|++++|.+
T Consensus        96 L~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          96 TLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             TTTTCCCSEEECCCCSS
T ss_pred             HHhCCcCCEEECCCCcC
Confidence            44455566666665543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.64  E-value=6.2e-05  Score=60.70  Aligned_cols=39  Identities=13%  Similarity=0.182  Sum_probs=17.1

Q ss_pred             Cccceeeccccccccc----cchhhhcCCCCCEEEcccCcCcc
Q 048551          236 PNLRKIVIALNNFTGP----LPDSFSNASNRERLELSYNQFRG  274 (409)
Q Consensus       236 ~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~  274 (409)
                      +.|++|++++|.++..    +...+...+.|++|++++|.+++
T Consensus        44 ~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~   86 (167)
T d1pgva_          44 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP   86 (167)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             CccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcch
Confidence            3444444444444321    11223334455555555555543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.07  E-value=8.4e-05  Score=59.77  Aligned_cols=61  Identities=11%  Similarity=0.187  Sum_probs=29.8

Q ss_pred             CCcEEEecC-CCCccc----cCccccCCCCCCEEEccCCccccc----CCccccCCCCCcEEEcCCCcCC
Q 048551           69 SLRFINIAD-NGVQGE----IPNELGNLVRLEKLILANNSFSGT----IPTNLSLRSKLMLFFANRNILA  129 (409)
Q Consensus        69 ~l~~L~L~~-n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~  129 (409)
                      .+++|++++ +.++..    +-.++...++|++|++++|.++..    +...+...+.++.+++++|.+.
T Consensus        18 ~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          18 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             CCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            556666665 334321    223344555666666666655432    1122334455555555555544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.87  E-value=0.00058  Score=54.58  Aligned_cols=17  Identities=12%  Similarity=0.096  Sum_probs=8.2

Q ss_pred             hcCCCCCEEEcccCcCc
Q 048551          257 SNASNRERLELSYNQFR  273 (409)
Q Consensus       257 ~~l~~L~~L~Ls~N~l~  273 (409)
                      ...++++.+++++|.++
T Consensus        71 ~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          71 KVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             HHCSSCCEEECCSSCCC
T ss_pred             hhcccchhhhhcccccc
Confidence            33445555555555444