Citrus Sinensis ID: 048556

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------48
Protein Sequence
VACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK
Secondary Structure (PSIPRED)
cEEHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEcEEEEcccccccccccccEEEEccccEEEEEccccccHHHHHHHHHHHccccccEEEEcccccccccHHHHHHcccccccccccccccHHHHHHcccccccHHHHHHHHHHHcHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHccccEEEEcccccHHccccEEEEEEccEEEcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHccccHEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEEEEccccccccccEEEEEEEEccccEEEEEccccccHHHHHHHHcccccccEEEEEEccEEHHHEcHHHHHHHEEEEcccccccccEHHHHHHccccccccHHHHHHHHHHHccHHHHccccHHHcEccccccHccHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHHHHccccEEEEEEEcEEccccEEEEEEccEEEEc
Coil and Loop (DISEMBL)
VACWIVTGERQAARIRGLYLKTLLRQDigffdkethsgeiiermsgdtvlIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYSLAIWFGGKMIlekgykggdvINVIFCVMIgsmslgqaspciSAFAAGQAAAYKLFEAIERkplidaydsngvklddirgdielkdiyfsypsrpgeqifngfslsipsgttaalvgqsgsgkSTVISLIERfydpqagevlidgvnlkeFQLKWIrgkiglvsqepvlftssikdninygkdgASIAEIMAAAELANAAKFIdslpqgldtmvgehgtqlsggQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK
Flexible Loop (DISEMBL)
vacwivtgerqaariRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKplidaydsngvkldDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAtsaldaesERVVQEALDKIMINRTTVIVAhrlstvrnadliavihqgklvek
Low Complexity Region (SEG)
VACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEglaaglgfgaftfvafSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGasiaeimaaaelanaaKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK
Disordered region (IsUnstruct)
*ACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQG*****
Disordered Region (DISOPRED)
VACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLAS*****YSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPLI*******V**DDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK
Disordered Region (DISEMBL)
VACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAA********KSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEH*********QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK
Disordered Region (DISPRO)
VACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	478	2.2.26 [Sep-21-2011]
Q9M1Q9	1296	ABC transporter B family	yes	no	0.995	0.367	0.753	0.0
Q9FWX7	1278	ABC transporter B family	no	no	0.991	0.370	0.774	0.0
O80725	1286	ABC transporter B family	no	no	0.989	0.367	0.770	0.0
Q9SYI3	1230	ABC transporter B family	no	no	0.993	0.386	0.723	0.0
Q9FWX8	1273	ABC transporter B family	no	no	0.991	0.372	0.751	0.0
Q9SYI2	1229	ABC transporter B family	no	no	0.993	0.386	0.728	0.0
Q9M0M2	1236	ABC transporter B family	no	no	0.968	0.374	0.690	0.0
Q9FHF1	1248	ABC transporter B family	no	no	0.995	0.381	0.654	0.0
Q8T9W4	1432	ABC transporter B family	yes	no	0.991	0.331	0.519	1e-146
Q8LPK2	1273	ABC transporter B family	no	no	0.966	0.362	0.530	1e-146

>sp|Q9M1Q9|AB21B_ARATH ABC transporter B family member 21 OS=Arabidopsis thaliana GN=ABCB21 PE=1 SV=2

 Score =  743 bits (1917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/478 (75%), Positives = 423/478 (88%)

Query: 1   VACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVG 60
           V+ W+++GERQA RIR LYL+T+LRQDI FFD ET++GE++ RMSGDTVLIQD++GEKVG
Sbjct: 143 VSGWMISGERQAGRIRSLYLQTILRQDIAFFDVETNTGEVVGRMSGDTVLIQDAMGEKVG 202

Query: 61  KFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAA 120
           K IQL++TFIGGFVIA ++GWLLTLVM+SSIP +V++   ++ VI+K+ASRGQT+Y+ AA
Sbjct: 203 KAIQLVSTFIGGFVIAFTEGWLLTLVMVSSIPLLVMSGAALAIVISKMASRGQTSYAKAA 262

Query: 121 AVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYS 180
            V EQT+GSIRTVASFTGEKQA++ YN+ L  AY++GV EG + GLG G    V F +Y+
Sbjct: 263 VVVEQTVGSIRTVASFTGEKQAISNYNKHLVSAYRAGVFEGASTGLGLGTLNIVIFCTYA 322

Query: 181 LAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIER 240
           LA+W+GGKMILEKGY GG V+ +IF V+ GSMSLGQASPC+SAFAAGQAAAYK+FEAI+R
Sbjct: 323 LAVWYGGKMILEKGYTGGQVLIIIFAVLTGSMSLGQASPCLSAFAAGQAAAYKMFEAIKR 382

Query: 241 KPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGS 300
           KP IDA D+ G  LDDIRGDIEL ++ FSYP+RP EQIF GFSLSI SG+T ALVGQSGS
Sbjct: 383 KPEIDASDTTGKVLDDIRGDIELNNVNFSYPARPEEQIFRGFSLSISSGSTVALVGQSGS 442

Query: 301 GKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG 360
           GKSTV+SLIERFYDPQ+GEV IDG+NLKEFQLKWIR KIGLVSQEPVLFTSSIK+NI YG
Sbjct: 443 GKSTVVSLIERFYDPQSGEVRIDGINLKEFQLKWIRSKIGLVSQEPVLFTSSIKENIAYG 502

Query: 361 KDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420
           K+ A++ EI  A ELANA+KFID LPQGLDTMVGEHGTQLSGGQKQRIA+ARAILKDPRI
Sbjct: 503 KENATVEEIRKATELANASKFIDKLPQGLDTMVGEHGTQLSGGQKQRIAVARAILKDPRI 562

Query: 421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
           LLLDEATSALDAESER+VQEALD+IM+NRTTV+VAHRLSTVRNAD+IAVIHQGK+VEK
Sbjct: 563 LLLDEATSALDAESERIVQEALDRIMVNRTTVVVAHRLSTVRNADMIAVIHQGKIVEK 620

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FWX7|AB11B_ARATH ABC transporter B family member 11 OS=Arabidopsis thaliana GN=ABCB11 PE=2 SV=1

 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/478 (77%), Positives = 424/478 (88%)

Query: 1   VACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVG 60
           VACW++TGERQAARIR  YLKT+LRQDIGFFD ET++GE++ RMSGDTVLIQD++GEKVG
Sbjct: 121 VACWMITGERQAARIRSTYLKTILRQDIGFFDVETNTGEVVGRMSGDTVLIQDAMGEKVG 180

Query: 61  KFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAA 120
           KFIQL++TF+GGFV+A  KGWLLTLVML+SIP + +    M+ ++T+ +SRGQ AY+ AA
Sbjct: 181 KFIQLVSTFVGGFVLAFIKGWLLTLVMLTSIPLLAMAGAAMALIVTRASSRGQAAYAKAA 240

Query: 121 AVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYS 180
            V EQTIGSIRTVASFTGEKQA+  Y + +T AYKS + +G + GLG G   FV FSSY+
Sbjct: 241 TVVEQTIGSIRTVASFTGEKQAINSYKKFITSAYKSSIQQGFSTGLGLGVMFFVFFSSYA 300

Query: 181 LAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIER 240
           LAIWFGGKMILEKGY GG VINVI  V+ GSMSLGQ SPC++AFAAGQAAAYK+FE I+R
Sbjct: 301 LAIWFGGKMILEKGYTGGAVINVIIIVVAGSMSLGQTSPCVTAFAAGQAAAYKMFETIKR 360

Query: 241 KPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGS 300
           KPLIDAYD NG  L+DIRGDIELKD++FSYP+RP E+IF+GFSL IPSG TAALVG+SGS
Sbjct: 361 KPLIDAYDVNGKVLEDIRGDIELKDVHFSYPARPDEEIFDGFSLFIPSGATAALVGESGS 420

Query: 301 GKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG 360
           GKSTVISLIERFYDP++G VLIDGVNLKEFQLKWIR KIGLVSQEPVLF+SSI +NI YG
Sbjct: 421 GKSTVISLIERFYDPKSGAVLIDGVNLKEFQLKWIRSKIGLVSQEPVLFSSSIMENIAYG 480

Query: 361 KDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420
           K+ A++ EI AA ELANAAKFID LPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI
Sbjct: 481 KENATVEEIKAATELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 540

Query: 421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
           LLLDEATSALDAESERVVQEALD++M+NRTTVIVAHRLSTVRNAD+IAVIH+GK+VEK
Sbjct: 541 LLLDEATSALDAESERVVQEALDRVMVNRTTVIVAHRLSTVRNADMIAVIHRGKMVEK 598

Arabidopsis thaliana (taxid: 3702)

>sp|O80725|AB4B_ARATH ABC transporter B family member 4 OS=Arabidopsis thaliana GN=ABCB4 PE=1 SV=1

 Score =  737 bits (1902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/475 (77%), Positives = 421/475 (88%)

Query: 4   WIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFI 63
           W+++GERQAARIR LYLKT+LRQDI FFD +T++GE++ RMSGDTVLIQD++GEKVGK I
Sbjct: 127 WMISGERQAARIRSLYLKTILRQDIAFFDIDTNTGEVVGRMSGDTVLIQDAMGEKVGKAI 186

Query: 64  QLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVA 123
           QLLATF+GGFVIA  +GWLLTLVMLSSIP +V+   +++ VI K ASRGQTAY+ AA V 
Sbjct: 187 QLLATFVGGFVIAFVRGWLLTLVMLSSIPLLVMAGALLAIVIAKTASRGQTAYAKAATVV 246

Query: 124 EQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYSLAI 183
           EQTIGSIRTVASFTGEKQA++ YN+ L  AYK+GV EG + GLG G    V F SY+LA+
Sbjct: 247 EQTIGSIRTVASFTGEKQAISNYNKHLVTAYKAGVIEGGSTGLGLGTLFLVVFCSYALAV 306

Query: 184 WFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPL 243
           W+GGK+IL+KGY GG V+N+I  V+ GSMSLGQ SPC+SAFAAGQAAAYK+FE IER+P 
Sbjct: 307 WYGGKLILDKGYTGGQVLNIIIAVLTGSMSLGQTSPCLSAFAAGQAAAYKMFETIERRPN 366

Query: 244 IDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKS 303
           ID+Y +NG  LDDI+GDIELKD+YF+YP+RP EQIF GFSL I SGTT ALVGQSGSGKS
Sbjct: 367 IDSYSTNGKVLDDIKGDIELKDVYFTYPARPDEQIFRGFSLFISSGTTVALVGQSGSGKS 426

Query: 304 TVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDG 363
           TV+SLIERFYDPQAG+VLIDG+NLKEFQLKWIR KIGLVSQEPVLFT+SIKDNI YGK+ 
Sbjct: 427 TVVSLIERFYDPQAGDVLIDGINLKEFQLKWIRSKIGLVSQEPVLFTASIKDNIAYGKED 486

Query: 364 ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLL 423
           A+  EI AAAELANA+KF+D LPQGLDTMVGEHGTQLSGGQKQRIA+ARAILKDPRILLL
Sbjct: 487 ATTEEIKAAAELANASKFVDKLPQGLDTMVGEHGTQLSGGQKQRIAVARAILKDPRILLL 546

Query: 424 DEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
           DEATSALDAESERVVQEALD+IM+NRTTV+VAHRLSTVRNAD+IAVIHQGK+VEK
Sbjct: 547 DEATSALDAESERVVQEALDRIMVNRTTVVVAHRLSTVRNADMIAVIHQGKIVEK 601

Auxin influx transporter that mediates the transport of auxin in roots. Contributes to the basipetal transport in hypocotyls and root tips by establishing an auxin uptake sink in the root cap. Confers sensitivity to 1-N-naphthylphthalamic acid (NPA). Regulates the root elongation, the initiation of lateral roots and the development of root hairs. Can transports IAA, indole-3-propionic acid, NPA syringic acid, vanillic acid and some auxin metabolites, but not 2,4-D and 1-naphthaleneacetic acid.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYI3|AB5B_ARATH ABC transporter B family member 5 OS=Arabidopsis thaliana GN=ABCB5 PE=3 SV=1

 Score =  730 bits (1885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/478 (72%), Positives = 415/478 (86%)

Query: 1   VACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVG 60
           VACW++TGERQAARIR LYLKT+LRQDIGFFD E  +GE++ RMSGDTVLI D++GEKVG
Sbjct: 93  VACWMITGERQAARIRSLYLKTILRQDIGFFDVEMTTGEVVGRMSGDTVLILDAMGEKVG 152

Query: 61  KFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAA 120
           KFIQL++TF+GGFVIA  +GWLLTLVML+SIP + ++   ++ ++T+ +S+ Q AY+ A+
Sbjct: 153 KFIQLISTFVGGFVIAFLRGWLLTLVMLTSIPLLAMSGAAIAIIVTRASSQEQAAYAKAS 212

Query: 121 AVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYS 180
            V EQT+GSIRTVASFTGEKQA++ Y E +  AYKS V +G   GLG G    V FS+Y+
Sbjct: 213 NVVEQTLGSIRTVASFTGEKQAMSSYKELINLAYKSNVKQGFVTGLGLGVMFLVFFSTYA 272

Query: 181 LAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIER 240
           L  WFGG+MIL KGY GG VINV+  V+  S++LGQASPC++AF AG+AAAYK+FE IER
Sbjct: 273 LGTWFGGEMILRKGYTGGAVINVMVTVVSSSIALGQASPCLTAFTAGKAAAYKMFETIER 332

Query: 241 KPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGS 300
           +PLID +D NG  L+DIRG+IEL+D+ FSYP+RP E++F GFSL IPSGTT ALVG+SGS
Sbjct: 333 EPLIDTFDLNGKVLEDIRGEIELRDVCFSYPARPKEEVFGGFSLLIPSGTTTALVGESGS 392

Query: 301 GKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG 360
           GKSTVISLIERFYDP +G+VLIDGV+LKEFQLKWIRGKIGLVSQEPVLF+SSI +NI YG
Sbjct: 393 GKSTVISLIERFYDPNSGQVLIDGVDLKEFQLKWIRGKIGLVSQEPVLFSSSIMENIGYG 452

Query: 361 KDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420
           K+GA++ EI AA++LANAAKFID LP GL+T+VGEHGTQLSGGQKQRIAIARAILKDPRI
Sbjct: 453 KEGATVEEIQAASKLANAAKFIDKLPLGLETLVGEHGTQLSGGQKQRIAIARAILKDPRI 512

Query: 421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
           LLLDEATSALDAESERVVQEALD+IM+NRTTVIVAHRLSTVRNAD+IAVIH+GK+VE+
Sbjct: 513 LLLDEATSALDAESERVVQEALDRIMVNRTTVIVAHRLSTVRNADIIAVIHRGKIVEE 570

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FWX8|AB12B_ARATH ABC transporter B family member 12 OS=Arabidopsis thaliana GN=ABCB12 PE=2 SV=2

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/478 (75%), Positives = 419/478 (87%)

Query: 1   VACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVG 60
           VACW++TGERQAA+IR  YLKT+LRQDIGFFD ET++GE++ RMSGDTV IQD++GEKVG
Sbjct: 108 VACWMITGERQAAKIRSNYLKTILRQDIGFFDVETNTGEVVGRMSGDTVHIQDAMGEKVG 167

Query: 61  KFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAA 120
           KFIQL++TF+GGF +A +KGWLLTLVML+SIP + +    M+ ++T+ +SRGQ AY+ AA
Sbjct: 168 KFIQLVSTFVGGFALAFAKGWLLTLVMLTSIPFLAMAGAAMALLVTRASSRGQAAYAKAA 227

Query: 121 AVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYS 180
            V EQTIGSIRTVASFTGEKQA+  Y + +T AYKS + +G + GLG G   +V FSSY+
Sbjct: 228 TVVEQTIGSIRTVASFTGEKQAINSYKKYITSAYKSSIQQGFSTGLGLGVMIYVFFSSYA 287

Query: 181 LAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIER 240
           LAIWFGGKMILEKGY GG VINVI  V+ GSMSLGQ SPC++AFAAGQAAAYK+FE I+R
Sbjct: 288 LAIWFGGKMILEKGYTGGSVINVIIIVVAGSMSLGQTSPCVTAFAAGQAAAYKMFETIKR 347

Query: 241 KPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGS 300
           KPLIDAYD NG  L DIRGDIELKD++FSYP+RP E+IF+GFSL IPSG TAALVG+SGS
Sbjct: 348 KPLIDAYDVNGKVLGDIRGDIELKDVHFSYPARPDEEIFDGFSLFIPSGATAALVGESGS 407

Query: 301 GKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG 360
           GKSTVI+LIERFYDP+AGEVLIDG+NLKEFQLKWIR KIGLV QEPVLF+SSI +NI YG
Sbjct: 408 GKSTVINLIERFYDPKAGEVLIDGINLKEFQLKWIRSKIGLVCQEPVLFSSSIMENIAYG 467

Query: 361 KDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420
           K+ A++ EI  A ELANAAKFI++LPQGLDT VGEHGTQLSGGQKQRIAIARAILKDPR+
Sbjct: 468 KENATLQEIKVATELANAAKFINNLPQGLDTKVGEHGTQLSGGQKQRIAIARAILKDPRV 527

Query: 421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
           LLLDEATSALD ESERVVQEALD++M+NRTTV+VAHRLSTVRNAD+IAVIH GK+VEK
Sbjct: 528 LLLDEATSALDTESERVVQEALDRVMVNRTTVVVAHRLSTVRNADMIAVIHSGKMVEK 585

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYI2|AB3B_ARATH ABC transporter B family member 3 OS=Arabidopsis thaliana GN=ABCB3 PE=1 SV=1

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/478 (72%), Positives = 415/478 (86%)

Query: 1   VACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVG 60
           VACW++TGERQAARIR LYLKT+LRQDIGFFD ET +GE++ RMSGDTVLI +++GEKVG
Sbjct: 88  VACWMITGERQAARIRSLYLKTILRQDIGFFDVETSTGEVVGRMSGDTVLILEAMGEKVG 147

Query: 61  KFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAA 120
           KFIQL+ATF+GGFV+A  KGWLLTLVML SIP + +    M  ++T+ +SR Q AY+ A+
Sbjct: 148 KFIQLIATFVGGFVLAFVKGWLLTLVMLVSIPLLAIAGAAMPIIVTRASSREQAAYAKAS 207

Query: 121 AVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYS 180
            V EQT+GSIRTVASFTGEKQA+  Y E +  AY++ V +G + GLG G   FV F SY+
Sbjct: 208 TVVEQTLGSIRTVASFTGEKQAMKSYREFINLAYRASVKQGFSMGLGLGVVFFVFFCSYA 267

Query: 181 LAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIER 240
           LAIWFGG+MIL+KGY GG+V+NV+  V+  SMSLGQ +PC++AFAAG+AAAYK+FE IER
Sbjct: 268 LAIWFGGEMILKKGYTGGEVVNVMVTVVASSMSLGQTTPCLTAFAAGKAAAYKMFETIER 327

Query: 241 KPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGS 300
           KP IDA+D NG  L+DIRG+IEL+D+ FSYP+RP E++F GFSL IPSG TAALVG+SGS
Sbjct: 328 KPSIDAFDLNGKVLEDIRGEIELRDVCFSYPARPMEEVFGGFSLLIPSGATAALVGESGS 387

Query: 301 GKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG 360
           GKS+VISLIERFYDP +G VLIDGVNLKEFQLKWIRGKIGLVSQEPVLF+SSI +NI YG
Sbjct: 388 GKSSVISLIERFYDPSSGSVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFSSSIMENIGYG 447

Query: 361 KDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420
           K+ A++ EI AAA+LANAA FID LP+GL+T+VGEHGTQLSGGQKQRIAIARAILKDPRI
Sbjct: 448 KENATVEEIQAAAKLANAANFIDKLPRGLETLVGEHGTQLSGGQKQRIAIARAILKDPRI 507

Query: 421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
           LLLDEATSALDAESERVVQEALD++M++RTTVIVAHRLSTVRNAD+IAVIH+GK+VE+
Sbjct: 508 LLLDEATSALDAESERVVQEALDRVMMSRTTVIVAHRLSTVRNADMIAVIHRGKIVEE 565

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0M2|AB9B_ARATH ABC transporter B family member 9 OS=Arabidopsis thaliana GN=ABCB9 PE=3 SV=2

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/478 (69%), Positives = 396/478 (82%)

Query: 1   VACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVG 60
           V+CW+VTGERQ+A IRGLYLKT+LRQDIG+FD ET++GE+I RMSGDT+LIQD++GEKVG
Sbjct: 95  VSCWMVTGERQSATIRGLYLKTILRQDIGYFDTETNTGEVIGRMSGDTILIQDAMGEKVG 154

Query: 61  KFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAA 120
           KF QLL TF+GGF IA  KG LL  V+ S IP IV+    MS +++K+A RGQ AY+ A 
Sbjct: 155 KFTQLLCTFLGGFAIAFYKGPLLAGVLCSCIPLIVIAGAAMSLIMSKMAGRGQVAYAEAG 214

Query: 121 AVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYS 180
            V EQT+G+IRTV +FTGEKQA  KY   L  AYK+ V +GL +G G G    V F SY 
Sbjct: 215 NVVEQTVGAIRTVVAFTGEKQATEKYESKLEIAYKTVVQQGLISGFGLGTMLAVIFCSYG 274

Query: 181 LAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIER 240
           LA+W+G K+I+EKGY GG VINVIF V+ G MSLGQ SP ++AFAAG+AAA+K+FE I+R
Sbjct: 275 LAVWYGAKLIMEKGYNGGQVINVIFAVLTGGMSLGQTSPSLNAFAAGRAAAFKMFETIKR 334

Query: 241 KPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGS 300
            P IDAYD +G  L+DIRGDIELKD+YF YP+RP  QIF GFSL +P+G T ALVGQSGS
Sbjct: 335 SPKIDAYDMSGSVLEDIRGDIELKDVYFRYPARPDVQIFAGFSLFVPNGKTVALVGQSGS 394

Query: 301 GKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG 360
           GKSTVISLIERFYDP++G+VLID ++LK+ QLKWIR KIGLVSQEPVLF ++IK+NI YG
Sbjct: 395 GKSTVISLIERFYDPESGQVLIDNIDLKKLQLKWIRSKIGLVSQEPVLFATTIKENIAYG 454

Query: 361 KDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420
           K+ A+  EI  A ELANAAKFID LPQGLDTMVGEHGTQ+SGGQKQR+AIARAILK+P+I
Sbjct: 455 KEDATDQEIRTAIELANAAKFIDKLPQGLDTMVGEHGTQMSGGQKQRLAIARAILKNPKI 514

Query: 421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
           LLLDEATSALDAESER+VQ+AL  +M NRTTV+VAHRL+T+R AD+IAV+HQGK+VEK
Sbjct: 515 LLLDEATSALDAESERIVQDALVNLMSNRTTVVVAHRLTTIRTADVIAVVHQGKIVEK 572

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHF1|AB7B_ARATH ABC transporter B family member 7 OS=Arabidopsis thaliana GN=ABCB7 PE=3 SV=1

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/478 (65%), Positives = 394/478 (82%)

Query: 1   VACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVG 60
           V+CW+VTGERQ+ RIR LYLKT+LRQDIGFFD ET++GE+I RMSGDT+LIQDS+GEKVG
Sbjct: 97  VSCWMVTGERQSTRIRRLYLKTILRQDIGFFDTETNTGEVIGRMSGDTILIQDSMGEKVG 156

Query: 61  KFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAA 120
           KF QL+++F+GGF +A   G  LTL +L  +P IV T G M+ +++K A R Q AY+ A 
Sbjct: 157 KFTQLVSSFVGGFTVAFIVGMKLTLALLPCVPLIVGTGGAMTYIMSKKAQRVQLAYTEAG 216

Query: 121 AVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYS 180
            V +Q +GSIRTV +FTGEKQ++ KY + L  AYKS V +GL +GLG G    V + +Y 
Sbjct: 217 NVVQQAVGSIRTVVAFTGEKQSMGKYEKKLEIAYKSMVKQGLYSGLGIGIMMVVVYCTYG 276

Query: 181 LAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIER 240
            AIW+G + I+EKGY GG V+NVI  ++ G M+LGQ  P +++FAAG AAAYK+FE I+R
Sbjct: 277 FAIWYGARQIIEKGYTGGQVMNVITSILTGGMALGQTLPSLNSFAAGTAAAYKMFETIKR 336

Query: 241 KPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGS 300
           KP IDAYD +G  L++I+GDIEL+D+YF YP+RP  QIF GFSL++P+G T ALVGQSGS
Sbjct: 337 KPKIDAYDMSGEVLEEIKGDIELRDVYFRYPARPDVQIFVGFSLTVPNGMTVALVGQSGS 396

Query: 301 GKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG 360
           GKSTVISLIERFYDP++GEVLIDG++LK+FQ+KWIR KIGLVSQEP+LF ++I++NI YG
Sbjct: 397 GKSTVISLIERFYDPESGEVLIDGIDLKKFQVKWIRSKIGLVSQEPILFATTIRENIVYG 456

Query: 361 KDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420
           K  AS  EI  A +LANA+ FID LPQGL+TMVGEHGTQLSGGQKQRIAIARAILK+P+I
Sbjct: 457 KKDASDQEIRTALKLANASNFIDKLPQGLETMVGEHGTQLSGGQKQRIAIARAILKNPKI 516

Query: 421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
           LLLDEATSALDAESER+VQ+AL K+M++RTTV+VAHRL+T+R AD+IAV+ QGK++EK
Sbjct: 517 LLLDEATSALDAESERIVQDALVKLMLSRTTVVVAHRLTTIRTADMIAVVQQGKVIEK 574

Arabidopsis thaliana (taxid: 3702)

>sp|Q8T9W4|ABCB3_DICDI ABC transporter B family member 3 OS=Dictyostelium discoideum GN=abcB3 PE=3 SV=1

 Score =  518 bits (1335), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 251/483 (51%), Positives = 345/483 (71%), Gaps = 9/483 (1%)

Query: 4   WIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFI 63
           W++ GERQ +RIR  YL++ LRQ+IG+FD    + E+  R++ DTVL +++IGEKVG+FI
Sbjct: 250 WMIAGERQTSRIRREYLESTLRQEIGWFDT-NKANELSSRINSDTVLFEEAIGEKVGRFI 308

Query: 64  QLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVA 123
              +TF+ GFVI  +KGW LTLV+ S  P + +     + ++T++   GQ AYS A  VA
Sbjct: 309 HFFSTFVAGFVIGFTKGWQLTLVITSVSPLLAIGGFFTAKMMTQMTKLGQEAYSRAGGVA 368

Query: 124 EQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYSLAI 183
           E+ IGSIRTVA+F+GEK A+ KY+ +L  A   G       GLG G   FV   +Y+LA 
Sbjct: 369 EENIGSIRTVATFSGEKLAIDKYSNNLKDARTVGYKRSFFNGLGLGFVQFVILGTYALAF 428

Query: 184 WFGGKMILEK--------GYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLF 235
           W+G  +I  K         + GGDV++V F V+IG+ S+GQASPC++ FA G+ AAYK+F
Sbjct: 429 WYGSTLISNKVTNSVSDRPWTGGDVVSVFFAVIIGATSIGQASPCLALFAQGRGAAYKIF 488

Query: 236 EAIERKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALV 295
           + I+R+   + + + G+K + + G+IE KD+ F YPSRP   IFNGF+L I  G T  LV
Sbjct: 489 QVIDRQSKANPFSTRGIKPETLSGEIEFKDVGFHYPSRPDVPIFNGFNLKIKPGQTVGLV 548

Query: 296 GQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKD 355
           G SG GKST+ISL+ERFYDP  GE+L+DG ++++F ++ +R KIGLV+QEPVLF ++I +
Sbjct: 549 GDSGGGKSTIISLLERFYDPCQGEILLDGEDIRKFNVRGLRQKIGLVNQEPVLFATTISE 608

Query: 356 NINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL 415
           NI YGK+GA+  EI  AA+LANA  FI  LPQG +T+VGE G Q+SGGQ+QRIAIARA++
Sbjct: 609 NIRYGKEGATQDEIEEAAKLANAHSFISQLPQGYNTLVGEKGVQMSGGQRQRIAIARAVI 668

Query: 416 KDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKL 475
           K+P ILLLDE+TSALDAES ++VQEALD +M  RTT+++AH LST+RNAD+I  I +G  
Sbjct: 669 KNPNILLLDESTSALDAESTKLVQEALDVLMKGRTTIVIAHNLSTIRNADVIIYIKKGVA 728

Query: 476 VEK 478
           VE+
Sbjct: 729 VER 731

Dictyostelium discoideum (taxid: 44689)

>sp|Q8LPK2|AB2B_ARATH ABC transporter B family member 2 OS=Arabidopsis thaliana GN=ABCB2 PE=1 SV=3

 Score =  517 bits (1332), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 253/477 (53%), Positives = 341/477 (71%)

Query: 1   VACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVG 60
           VACW+ TGERQAA++R  YL+++L QDI  FD E  +GE+I  ++ D +++QD++ EKVG
Sbjct: 141 VACWMHTGERQAAKMRRAYLRSMLSQDISLFDTEASTGEVISAITSDILVVQDALSEKVG 200

Query: 61  KFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAA 120
            F+  ++ FI GF I  +  W ++LV LS +P I L  G+ + V   L +R + +Y  A 
Sbjct: 201 NFLHYISRFIAGFAIGFTSVWQISLVTLSIVPLIALAGGIYAFVAIGLIARVRKSYIKAG 260

Query: 121 AVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYS 180
            +AE+ IG++RTV +FTGE++AV  Y E+L   YK G   GL  GLG G+   V F S++
Sbjct: 261 EIAEEVIGNVRTVQAFTGEERAVRLYREALENTYKYGRKAGLTKGLGLGSMHCVLFLSWA 320

Query: 181 LAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIER 240
           L +WF   ++ +    GG     +  V+I  +SLGQA+P ISAF   +AAAY +F+ IER
Sbjct: 321 LLVWFTSVVVHKDIADGGKSFTTMLNVVIAGLSLGQAAPDISAFVRAKAAAYPIFKMIER 380

Query: 241 KPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGS 300
             +      +G KL  + G I+ KD  FSYPSRP   IF+  +L+IP+G   ALVG SGS
Sbjct: 381 NTVTKTSAKSGRKLGKVDGHIQFKDATFSYPSRPDVVIFDRLNLAIPAGKIVALVGGSGS 440

Query: 301 GKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG 360
           GKSTVISLIERFY+P +G VL+DG N+ E  +KW+RG+IGLV+QEP LF ++I++NI YG
Sbjct: 441 GKSTVISLIERFYEPISGAVLLDGNNISELDIKWLRGQIGLVNQEPALFATTIRENILYG 500

Query: 361 KDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420
           KD A+  EI  AA+L+ A  FI++LP+G +T VGE G QLSGGQKQRIAI+RAI+K+P I
Sbjct: 501 KDDATAEEITRAAKLSEAISFINNLPEGFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 560

Query: 421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
           LLLDEATSALDAESE+ VQEALD++M+ RTTV+VAHRLSTVRNAD+IAV+H+GK+VE
Sbjct: 561 LLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTVRNADIIAVVHEGKIVE 617

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	478
359477263	1294	PREDICTED: ABC transporter B family memb	0.995	0.367	0.790	0.0
225437787	1297	PREDICTED: ABC transporter B family memb	0.995	0.367	0.801	0.0
297744092	1147	unnamed protein product [Vitis vinifera]	0.943	0.393	0.801	0.0
147774419	1280	hypothetical protein VITISV_029557 [Viti	0.985	0.367	0.799	0.0
224064756	1224	multidrug/pheromone exporter, MDR family	0.987	0.385	0.803	0.0
14715462	1289	CjMDR1 [Coptis japonica]	0.995	0.369	0.784	0.0
224106986	1289	multidrug/pheromone exporter, MDR family	0.993	0.368	0.769	0.0
224130854	620	multidrug/pheromone exporter, MDR family	1.0	0.770	0.771	0.0
224130846	1294	multidrug/pheromone exporter, MDR family	0.995	0.367	0.776	0.0
356533485	1282	PREDICTED: ABC transporter B family memb	0.995	0.371	0.780	0.0

>gi|359477263|ref|XP_002275143.2| PREDICTED: ABC transporter B family member 11-like [Vitis vinifera]

 Score =  794 bits (2050), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/478 (79%), Positives = 435/478 (91%)

Query: 1   VACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVG 60
           V CW++TGERQAARIR LYLKT+LRQD+GFFDK T++GE++ RMSGDTV IQD++GEKVG
Sbjct: 134 VTCWMLTGERQAARIRSLYLKTILRQDVGFFDKFTNAGEVVGRMSGDTVFIQDAMGEKVG 193

Query: 61  KFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAA 120
           KFIQL+ATF+GGF++A  KGWLLTLVMLS  P +V+     +  ITK+ASRGQ AYS+AA
Sbjct: 194 KFIQLMATFLGGFIVAFCKGWLLTLVMLSCFPPLVIVGAFTTMFITKMASRGQAAYSVAA 253

Query: 121 AVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYS 180
            V EQTIGSIRTVASFTGEKQA+AKYN+SL+KAY SGV E + +GLGFG F FV F+SY+
Sbjct: 254 VVVEQTIGSIRTVASFTGEKQAIAKYNQSLSKAYTSGVQESVLSGLGFGLFMFVLFASYA 313

Query: 181 LAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIER 240
           LA+WFG KMI++KGY GG V+N+IF V+ GSMSLGQASPC+SAF +GQAAA+K+FE IER
Sbjct: 314 LAMWFGSKMIIDKGYTGGAVMNIIFSVVAGSMSLGQASPCLSAFGSGQAAAFKMFETIER 373

Query: 241 KPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGS 300
           KP IDAY S+G KLDDI+GD+EL+D+YFSYP+RP EQ+F GFSLSIPSGTTAALVG+SGS
Sbjct: 374 KPEIDAYSSDGQKLDDIQGDVELRDVYFSYPTRPDEQVFKGFSLSIPSGTTAALVGESGS 433

Query: 301 GKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG 360
           GKSTVISLIERFYDPQAGEVLIDG+NLKEFQL+WIRGKIGLVSQEPVLFTSSI+DNI YG
Sbjct: 434 GKSTVISLIERFYDPQAGEVLIDGINLKEFQLRWIRGKIGLVSQEPVLFTSSIRDNIAYG 493

Query: 361 KDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420
           KDGA+I EI AAAELANA+KFID LPQGLDT+VGEHGTQLSGGQKQR+AIARAILKDPRI
Sbjct: 494 KDGATIEEIRAAAELANASKFIDKLPQGLDTLVGEHGTQLSGGQKQRVAIARAILKDPRI 553

Query: 421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
           LLLDEATSALDAESERVVQEALD++MINRTT+IVAHRLSTVRNAD+IAVIH+GK+VEK
Sbjct: 554 LLLDEATSALDAESERVVQEALDRVMINRTTIIVAHRLSTVRNADMIAVIHRGKIVEK 611

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437787|ref|XP_002273987.1| PREDICTED: ABC transporter B family member 11 [Vitis vinifera]

 Score =  782 bits (2019), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/478 (80%), Positives = 433/478 (90%)

Query: 1   VACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVG 60
           VACW+VTGERQAARIR LYLKT+LRQD+ FFDKET++GE+I RMSGDTVLIQD++GEKVG
Sbjct: 133 VACWMVTGERQAARIRSLYLKTILRQDVAFFDKETNTGEVIGRMSGDTVLIQDAMGEKVG 192

Query: 61  KFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAA 120
           KFIQL++TFIGGF+IA  KGWLLTLVMLSSIP +V+  G MS  ++K+A+RGQ AY+ AA
Sbjct: 193 KFIQLVSTFIGGFIIAFIKGWLLTLVMLSSIPLLVIAGGAMSLFLSKMATRGQNAYAKAA 252

Query: 121 AVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYS 180
            V EQTIGSIRTVASFTGEKQAV KYN+ L  AYKSGV EGLAAGLG G   F+ F+SY+
Sbjct: 253 TVVEQTIGSIRTVASFTGEKQAVTKYNQFLVNAYKSGVFEGLAAGLGLGTVMFIIFASYA 312

Query: 181 LAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIER 240
           LA+WFG KMILEKGY GG V+NVI  V+ GSMSLGQASPC+SAFAAGQAAA+K+F+ I R
Sbjct: 313 LAVWFGAKMILEKGYTGGTVLNVIIAVLTGSMSLGQASPCMSAFAAGQAAAFKMFQTIHR 372

Query: 241 KPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGS 300
           KP ID  D+ G KL+DI+G+IEL+D+YFSYP+RP EQIF+GFSLSIPSGTTAALVGQSGS
Sbjct: 373 KPEIDVSDTKGKKLEDIQGEIELRDVYFSYPARPDEQIFSGFSLSIPSGTTAALVGQSGS 432

Query: 301 GKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG 360
           GKSTVISLIERFYDP AGEVLIDG+NLKEFQL+WIRGKIGLVSQEPVLFTSSI+DNI YG
Sbjct: 433 GKSTVISLIERFYDPLAGEVLIDGINLKEFQLRWIRGKIGLVSQEPVLFTSSIRDNIAYG 492

Query: 361 KDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420
           K+GA+I EI AAAELANA+KFID LPQGLDTMVGEHGTQLSGGQKQR+AIARAILKDPRI
Sbjct: 493 KEGATIEEIRAAAELANASKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRI 552

Query: 421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
           LLLDEATSALDAESERVVQEALD+IM+NRTT+IVAHRLSTVRNAD+I VIH+GK+VEK
Sbjct: 553 LLLDEATSALDAESERVVQEALDRIMVNRTTIIVAHRLSTVRNADMIGVIHRGKMVEK 610

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744092|emb|CBI37062.3| unnamed protein product [Vitis vinifera]

 Score =  781 bits (2018), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/478 (80%), Positives = 433/478 (90%)

Query: 1   VACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVG 60
           VACW+VTGERQAARIR LYLKT+LRQD+ FFDKET++GE+I RMSGDTVLIQD++GEKVG
Sbjct: 133 VACWMVTGERQAARIRSLYLKTILRQDVAFFDKETNTGEVIGRMSGDTVLIQDAMGEKVG 192

Query: 61  KFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAA 120
           KFIQL++TFIGGF+IA  KGWLLTLVMLSSIP +V+  G MS  ++K+A+RGQ AY+ AA
Sbjct: 193 KFIQLVSTFIGGFIIAFIKGWLLTLVMLSSIPLLVIAGGAMSLFLSKMATRGQNAYAKAA 252

Query: 121 AVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYS 180
            V EQTIGSIRTVASFTGEKQAV KYN+ L  AYKSGV EGLAAGLG G   F+ F+SY+
Sbjct: 253 TVVEQTIGSIRTVASFTGEKQAVTKYNQFLVNAYKSGVFEGLAAGLGLGTVMFIIFASYA 312

Query: 181 LAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIER 240
           LA+WFG KMILEKGY GG V+NVI  V+ GSMSLGQASPC+SAFAAGQAAA+K+F+ I R
Sbjct: 313 LAVWFGAKMILEKGYTGGTVLNVIIAVLTGSMSLGQASPCMSAFAAGQAAAFKMFQTIHR 372

Query: 241 KPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGS 300
           KP ID  D+ G KL+DI+G+IEL+D+YFSYP+RP EQIF+GFSLSIPSGTTAALVGQSGS
Sbjct: 373 KPEIDVSDTKGKKLEDIQGEIELRDVYFSYPARPDEQIFSGFSLSIPSGTTAALVGQSGS 432

Query: 301 GKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG 360
           GKSTVISLIERFYDP AGEVLIDG+NLKEFQL+WIRGKIGLVSQEPVLFTSSI+DNI YG
Sbjct: 433 GKSTVISLIERFYDPLAGEVLIDGINLKEFQLRWIRGKIGLVSQEPVLFTSSIRDNIAYG 492

Query: 361 KDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420
           K+GA+I EI AAAELANA+KFID LPQGLDTMVGEHGTQLSGGQKQR+AIARAILKDPRI
Sbjct: 493 KEGATIEEIRAAAELANASKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRI 552

Query: 421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
           LLLDEATSALDAESERVVQEALD+IM+NRTT+IVAHRLSTVRNAD+I VIH+GK+VEK
Sbjct: 553 LLLDEATSALDAESERVVQEALDRIMVNRTTIIVAHRLSTVRNADMIGVIHRGKMVEK 610

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147774419|emb|CAN76787.1| hypothetical protein VITISV_029557 [Vitis vinifera]

 Score =  780 bits (2013), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/478 (79%), Positives = 432/478 (90%)

Query: 1   VACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVG 60
           VACW+VTGERQAARIR LYLKT+LRQD+ FFDKET++GE+I RMSGDTVLIQD++GEKVG
Sbjct: 121 VACWMVTGERQAARIRSLYLKTILRQDVAFFDKETNTGEVIGRMSGDTVLIQDAMGEKVG 180

Query: 61  KFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAA 120
           KFIQL++TFIGGF+IA  KGWLLTLVMLSSIP +V+  G MS  ++K+A+RGQ AY+ AA
Sbjct: 181 KFIQLVSTFIGGFIIAFIKGWLLTLVMLSSIPLLVIAGGAMSLFLSKMATRGQNAYAKAA 240

Query: 121 AVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYS 180
            V EQTIGSIRTVASFTGEKQAV KYN+ L  AYKSGV EGLAAGLG G   F+ F+SY+
Sbjct: 241 TVVEQTIGSIRTVASFTGEKQAVTKYNQFLVNAYKSGVFEGLAAGLGLGTVMFIIFASYA 300

Query: 181 LAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIER 240
           LA+WFG KMILEKGY GG V+NVI  V+ GSMSLGQASPC+SAFAAGQAAA+K+FZ I R
Sbjct: 301 LAVWFGAKMILEKGYTGGTVLNVIIAVLTGSMSLGQASPCMSAFAAGQAAAFKMFZTIHR 360

Query: 241 KPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGS 300
           KP ID  D+ G  L+DI+G+IEL+D+YFSYP+RP EQIF+GFSLSIPSGTTAALVGQSGS
Sbjct: 361 KPEIDVSDTXGKXLEDIQGEIELRDVYFSYPARPDEQIFSGFSLSIPSGTTAALVGQSGS 420

Query: 301 GKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG 360
           GKSTVISLIERFYDP AGEVLIDG+NLKEFQL+WIRGKIGLVSQEPVLFTSSI+DNI YG
Sbjct: 421 GKSTVISLIERFYDPLAGEVLIDGINLKEFQLRWIRGKIGLVSQEPVLFTSSIRDNIAYG 480

Query: 361 KDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420
           K+GA+I EI AAAELANA+KFID LPQGLDTMVGEHGTQLSGGQKQR+AIARAILKDPRI
Sbjct: 481 KEGATIEEIRAAAELANASKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRI 540

Query: 421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
           LLLDEATSALDAESERVVQEALD+IM+NRTT+IVAHRLSTVRNAD+I VIH+GK+VEK
Sbjct: 541 LLLDEATSALDAESERVVQEALDRIMVNRTTIIVAHRLSTVRNADMIGVIHRGKMVEK 598

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064756|ref|XP_002301547.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] gi|222843273|gb|EEE80820.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa]

 Score =  779 bits (2012), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/478 (80%), Positives = 431/478 (90%)

Query: 1   VACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVG 60
           VACW+VTGERQAARIRG YLKT+LRQD+ FFDKET+SGE++ RMSGDTVLIQD++GEKVG
Sbjct: 64  VACWMVTGERQAARIRGTYLKTILRQDVAFFDKETNSGEVVGRMSGDTVLIQDAMGEKVG 123

Query: 61  KFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAA 120
           KFIQL++TFIGGF+I+  KGWLLTLVMLSSIP +V+    +S +I ++ASRGQTAYS AA
Sbjct: 124 KFIQLVSTFIGGFIISFIKGWLLTLVMLSSIPLLVIAGAGLSIMIARMASRGQTAYSKAA 183

Query: 121 AVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYS 180
           +V EQTIGSIRTVASFTGEKQA++ Y + L  AY SGV EGLAAG+G G    V F SY+
Sbjct: 184 SVVEQTIGSIRTVASFTGEKQAISNYKKFLVTAYNSGVQEGLAAGVGLGIVMLVVFCSYA 243

Query: 181 LAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIER 240
           LA+WFGG+MILEKGY GGDVINVI  V+ GSMSLGQASPC+SAFA+GQAAAYK+FEAI R
Sbjct: 244 LAVWFGGRMILEKGYTGGDVINVIVAVLTGSMSLGQASPCMSAFASGQAAAYKMFEAINR 303

Query: 241 KPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGS 300
           KP IDA D+ G  LDDIRGDIEL+D+YF+YP+RP EQIF+GFSL IPSG+TAALVGQSGS
Sbjct: 304 KPEIDASDTRGKILDDIRGDIELRDVYFNYPARPDEQIFSGFSLFIPSGSTAALVGQSGS 363

Query: 301 GKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG 360
           GKSTVISLIERFYDPQAGEVLIDG+NLKEFQLKWIR KIGLVSQEPVLFTSSIKDNI YG
Sbjct: 364 GKSTVISLIERFYDPQAGEVLIDGINLKEFQLKWIREKIGLVSQEPVLFTSSIKDNIAYG 423

Query: 361 KDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420
           KD A+  EI AAAELANAAKFID LPQG+DTMVGEHGTQLSGGQKQRIAIARAILKDPRI
Sbjct: 424 KDMATTEEIRAAAELANAAKFIDKLPQGIDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 483

Query: 421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
           LLLDEATSALDAESER+VQEALD+IM+NRTTVIVAHRLSTVRNAD+IAVI++GK+VEK
Sbjct: 484 LLLDEATSALDAESERIVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIYRGKMVEK 541

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14715462|dbj|BAB62040.1| CjMDR1 [Coptis japonica]

 Score =  771 bits (1990), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/478 (78%), Positives = 426/478 (89%)

Query: 1   VACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVG 60
           VACW+VTGERQAARIR LYLKT+LRQD+ FFDKET++GE++ RMSGDTVLIQD+IGEKVG
Sbjct: 134 VACWMVTGERQAARIRSLYLKTILRQDVAFFDKETNTGEVVGRMSGDTVLIQDAIGEKVG 193

Query: 61  KFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAA 120
           KFIQL +TFIGGF+IA  KGWLLTLVML+SIP +V    +M+  I+K+ASRGQ AYS A 
Sbjct: 194 KFIQLFSTFIGGFLIAFVKGWLLTLVMLTSIPPLVFCGALMTITISKMASRGQVAYSQAG 253

Query: 121 AVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYS 180
            V EQTIGSIRTVASFTGEK AV +Y + L KAY +G+HEGLA+G+G G+   V F SYS
Sbjct: 254 IVVEQTIGSIRTVASFTGEKHAVTQYEKYLNKAYLAGIHEGLASGVGLGSVLLVIFCSYS 313

Query: 181 LAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIER 240
           LA+WFGGKMI+EKGY GG+VIN+I  V+ GSMSLGQASPC+ AFAAGQAAAYK+ E I+R
Sbjct: 314 LAVWFGGKMIIEKGYNGGNVINIIVAVLTGSMSLGQASPCLGAFAAGQAAAYKMLETIKR 373

Query: 241 KPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGS 300
           KP ID+YD++G K DDIRGDIEL+D+ F+YP+RP EQIFNGFSL IPSGTT+ALVGQSGS
Sbjct: 374 KPEIDSYDTSGHKSDDIRGDIELRDVSFTYPARPDEQIFNGFSLFIPSGTTSALVGQSGS 433

Query: 301 GKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG 360
           GKSTVISLIERFYDPQAGEVLIDGVNLK+FQL+WIRGKIGLVSQEPVLF SSI+DNI YG
Sbjct: 434 GKSTVISLIERFYDPQAGEVLIDGVNLKDFQLRWIRGKIGLVSQEPVLFASSIRDNIAYG 493

Query: 361 KDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420
           KDGA++ EI AA E ANA+KFID LPQGLDT+VGEHGTQLSGGQKQRIAIARAILKDPRI
Sbjct: 494 KDGATVEEIKAATERANASKFIDKLPQGLDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 553

Query: 421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
           LLLDEATSALDAESE +VQEALD+IM+NRTTVIVAHRLSTVRNAD IAVIH+GK+VEK
Sbjct: 554 LLLDEATSALDAESEHIVQEALDRIMVNRTTVIVAHRLSTVRNADTIAVIHRGKIVEK 611

Source: Coptis japonica

Species: Coptis japonica

Genus: Coptis

Family: Ranunculaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106986|ref|XP_002314333.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] gi|222863373|gb|EEF00504.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa]

 Score =  770 bits (1989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/478 (76%), Positives = 419/478 (87%)

Query: 1   VACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVG 60
           V+CW+VTGERQAARIR LYL  +LRQ+IGFFD ETH+GEII RMSGDT+LIQD++GEKVG
Sbjct: 124 VSCWMVTGERQAARIRNLYLGAILRQEIGFFDNETHTGEIIGRMSGDTILIQDAMGEKVG 183

Query: 61  KFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAA 120
           KF+QL  TF  GFVIA  KGW LTLVM SSIP +VL+  VM+  ++K+ASRGQTAYS AA
Sbjct: 184 KFLQLFTTFTAGFVIAFIKGWKLTLVMASSIPLLVLSGAVMAITVSKMASRGQTAYSHAA 243

Query: 121 AVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYS 180
            + +Q+IGSIRTV SFTGEKQAV +YN+SLT+A K+GV EGLA G+GFG   F+ FS+Y+
Sbjct: 244 NIVDQSIGSIRTVVSFTGEKQAVVQYNKSLTEAVKTGVQEGLAIGVGFGVVAFIVFSTYA 303

Query: 181 LAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIER 240
           LA+WFG KMIL  GY GGDV+NV F V+ GSMSLGQ+S C+SAF+AG+AAA+KLFE I+R
Sbjct: 304 LAVWFGAKMILNDGYNGGDVVNVNFAVLTGSMSLGQSSSCLSAFSAGRAAAFKLFEVIDR 363

Query: 241 KPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGS 300
           K  ID+Y+SNG  LDDI+GDIELKDI+FSYP+RP EQIFNGFSL+IP GTTAALVG+SGS
Sbjct: 364 KSQIDSYNSNGRTLDDIQGDIELKDIHFSYPARPDEQIFNGFSLAIPPGTTAALVGKSGS 423

Query: 301 GKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG 360
           GKST+I LIERFYDP AGEVLIDGVNLKEFQLKWIR KIGLVSQEPVLF  SIKDNI YG
Sbjct: 424 GKSTIIGLIERFYDPHAGEVLIDGVNLKEFQLKWIRQKIGLVSQEPVLFACSIKDNIAYG 483

Query: 361 KDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420
           KDGA+  EI  A+ELANAAKFID LPQGLDTMVGE+GTQLSGGQKQRIAIARAILKDPRI
Sbjct: 484 KDGATSEEIKTASELANAAKFIDKLPQGLDTMVGENGTQLSGGQKQRIAIARAILKDPRI 543

Query: 421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
           LLLDEATSALD ESER+VQEALD+IMINRTTV+VAHRLSTVRNAD IAV+H GK+VEK
Sbjct: 544 LLLDEATSALDTESERIVQEALDRIMINRTTVVVAHRLSTVRNADAIAVLHHGKIVEK 601

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130854|ref|XP_002320941.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] gi|222861714|gb|EEE99256.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa]

 Score =  763 bits (1971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/478 (77%), Positives = 417/478 (87%)

Query: 1   VACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVG 60
           VACW+VTGERQAARIRG YLKT+LRQD+ FFDKET++GE++ RMSGDTVLIQD++GEKVG
Sbjct: 140 VACWMVTGERQAARIRGTYLKTILRQDVAFFDKETNTGEVVGRMSGDTVLIQDAMGEKVG 199

Query: 61  KFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAA 120
           KFIQLL+TF GGF IA  +GWLLTLVMLSSIP IV+    MS +I++ AS GQTAY+ AA
Sbjct: 200 KFIQLLSTFFGGFAIAFVQGWLLTLVMLSSIPLIVIAGAAMSIMISRKASLGQTAYAKAA 259

Query: 121 AVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYS 180
            V EQT+GSIRTVASFT E+QA++ Y + L  AYKSGV EG AAGLG G    V FSSY+
Sbjct: 260 IVVEQTLGSIRTVASFTCEEQAISNYQKFLITAYKSGVQEGFAAGLGIGIVMLVIFSSYA 319

Query: 181 LAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIER 240
           LAIWFGGK+I+EKGY GG VINVI  ++IGS SLGQASPC+SAF AGQAAA K+F+ I R
Sbjct: 320 LAIWFGGKLIVEKGYTGGTVINVIVALLIGSTSLGQASPCMSAFVAGQAAASKMFQTISR 379

Query: 241 KPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGS 300
           +P IDAY+  G  L DI GDIEL+D+YFSYP+RP +QIF+G SL +PSG TAALVGQSGS
Sbjct: 380 EPKIDAYEMRGKILKDINGDIELRDVYFSYPARPDDQIFSGLSLLVPSGITAALVGQSGS 439

Query: 301 GKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG 360
           GKSTVISL+ERFYDPQAGEVLIDG+NLKEFQLKWIR KIGLVSQEPVLFTSSI+DNI YG
Sbjct: 440 GKSTVISLLERFYDPQAGEVLIDGINLKEFQLKWIREKIGLVSQEPVLFTSSIRDNIAYG 499

Query: 361 KDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420
           KDGA+  EI A AELANAAKFID LPQGLDTMVGEHGTQ+SGGQKQRIAIARAILKDPRI
Sbjct: 500 KDGATTEEIRAVAELANAAKFIDKLPQGLDTMVGEHGTQMSGGQKQRIAIARAILKDPRI 559

Query: 421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
           LLLDEATSALDAESER+VQEALD+IM+NRTT+IVAHRLSTVRN DLI+VIH GK+VEK
Sbjct: 560 LLLDEATSALDAESERIVQEALDRIMVNRTTLIVAHRLSTVRNVDLISVIHHGKIVEK 617

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130846|ref|XP_002320939.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] gi|222861712|gb|EEE99254.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa]

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/478 (77%), Positives = 422/478 (88%)

Query: 1   VACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVG 60
           VACW+VTGERQAARIRG YLKT+L+QD+ FFDKET++GE++ RMSGDTVLIQD++GEKVG
Sbjct: 130 VACWMVTGERQAARIRGTYLKTILKQDVAFFDKETNTGEVVGRMSGDTVLIQDAMGEKVG 189

Query: 61  KFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAA 120
           KFIQL++TFIGGF++A  KGWLL LVMLSSIP +V++   ++ +I ++ASRGQTAY+ AA
Sbjct: 190 KFIQLVSTFIGGFIVAFVKGWLLALVMLSSIPLLVISGAGLAIIIARMASRGQTAYAKAA 249

Query: 121 AVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYS 180
            V EQ IGSIRTVASFTGEKQA++ Y + L  AY SGV EG  AGLG G    + F +Y+
Sbjct: 250 TVVEQAIGSIRTVASFTGEKQAISNYKKFLATAYNSGVQEGFTAGLGLGIVMLLVFCTYA 309

Query: 181 LAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIER 240
           LAIWFGGKMILEKGY GGDV+NVI  V+ GSMSLGQASPC+SAFAAGQAAAYK+FE I R
Sbjct: 310 LAIWFGGKMILEKGYTGGDVVNVIIAVLTGSMSLGQASPCMSAFAAGQAAAYKMFETINR 369

Query: 241 KPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGS 300
           KP ID+ D++G  LDDI GD+EL+D+YF+YP+RP EQIF+GFSL IPSGTT ALVGQSGS
Sbjct: 370 KPEIDSSDTSGKILDDISGDVELRDVYFTYPARPDEQIFSGFSLFIPSGTTTALVGQSGS 429

Query: 301 GKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG 360
           GKSTVISLIERFYDPQAGEVLIDG NLKEFQLKWIR KIGLVSQEPVLFTSSI+DNI YG
Sbjct: 430 GKSTVISLIERFYDPQAGEVLIDGTNLKEFQLKWIREKIGLVSQEPVLFTSSIRDNIAYG 489

Query: 361 KDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420
           KDGA+  EI A AELANAAKFID LPQGLDTMVGEHGTQ+SGGQKQRIAIARAILKDPRI
Sbjct: 490 KDGATTEEIRAVAELANAAKFIDKLPQGLDTMVGEHGTQMSGGQKQRIAIARAILKDPRI 549

Query: 421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
           LLLDEATSALDAESER+VQEALD+IM+NRTT+IVAHRLSTVRN DLI+VIH GK+VEK
Sbjct: 550 LLLDEATSALDAESERIVQEALDRIMVNRTTLIVAHRLSTVRNVDLISVIHHGKIVEK 607

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533485|ref|XP_003535294.1| PREDICTED: ABC transporter B family member 4-like [Glycine max]

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/478 (78%), Positives = 425/478 (88%)

Query: 1   VACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVG 60
           V  W+VTGERQAARIRGLYLKT+LRQD+ FFDKET++GE+I RMSGDTVLIQD++GEKVG
Sbjct: 122 VTSWMVTGERQAARIRGLYLKTILRQDVAFFDKETNTGEVIGRMSGDTVLIQDAMGEKVG 181

Query: 61  KFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAA 120
           KF+QL+ATFIGGFVIA  KGWLLT+VMLS++P + L+   M+ +I ++ASRGQTAY+ AA
Sbjct: 182 KFLQLIATFIGGFVIAFIKGWLLTVVMLSTLPLLALSGATMAVIIGRMASRGQTAYAKAA 241

Query: 121 AVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYS 180
            V EQTIGSIRTVASFTGEKQAV+ Y++ L  AYKSGVHEG  AG G G    V F  Y+
Sbjct: 242 HVVEQTIGSIRTVASFTGEKQAVSSYSKFLVDAYKSGVHEGFIAGAGLGTVMLVIFCGYA 301

Query: 181 LAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIER 240
           LA+WFG KMI+EKGY GG VINVI  V+  SMSLG+ASP +SAFAAGQAAAYK+F+ IER
Sbjct: 302 LAVWFGAKMIMEKGYNGGTVINVIIAVLTASMSLGEASPSLSAFAAGQAAAYKMFQTIER 361

Query: 241 KPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGS 300
           KP IDAYD NG  L+DI+G+IEL+D+YFSYP+RP E IFNGFSL IPSGTTAALVGQSGS
Sbjct: 362 KPEIDAYDPNGKILEDIQGEIELRDVYFSYPARPEELIFNGFSLHIPSGTTAALVGQSGS 421

Query: 301 GKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG 360
           GKSTVISL+ERFYDPQAGEVLIDG+NLKEFQL+WIRGKIGLVSQEPVLF SSIKDNI YG
Sbjct: 422 GKSTVISLVERFYDPQAGEVLIDGINLKEFQLRWIRGKIGLVSQEPVLFASSIKDNIAYG 481

Query: 361 KDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420
           K+GA+I EI +A+ELANAAKFID LPQGLDTMV EHGTQLSGGQKQRIAIARAILK+PRI
Sbjct: 482 KEGATIEEIRSASELANAAKFIDKLPQGLDTMVCEHGTQLSGGQKQRIAIARAILKNPRI 541

Query: 421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
           LLLDEATSALDAESERVVQEALD+IM+NRTT++VAHRLSTVRNAD+IAVIH+GK+VEK
Sbjct: 542 LLLDEATSALDAESERVVQEALDRIMVNRTTIVVAHRLSTVRNADMIAVIHRGKMVEK 599

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	478
TAIR|locus:2196145	1278	ABCB11 "ATP-binding cassette B	1.0	0.374	0.734	2.4e-186
TAIR|locus:2041434	1286	ABCB4 "ATP-binding cassette B4	0.993	0.369	0.732	1.3e-185
TAIR|locus:2196135	1273	ABCB12 "ATP-binding cassette B	1.0	0.375	0.715	1.2e-182
TAIR|locus:2141350	1229	ABCB3 "ATP-binding cassette B3	1.0	0.388	0.688	3.2e-175
TAIR|locus:2141365	1230	ABCB5 "ATP-binding cassette B5	1.0	0.388	0.688	5.3e-175
TAIR|locus:2117656	1236	ABCB9 "ATP-binding cassette B9	1.0	0.386	0.654	1.2e-166
TAIR|locus:2151496	1248	ABCB7 "ATP-binding cassette B7	1.0	0.383	0.621	3.2e-159
DICTYBASE|DDB_G0291714	1432	abcB3 "ABC transporter B famil	0.991	0.331	0.488	5.7e-123
TAIR|locus:2120805	1273	ABCB2 "ATP-binding cassette B2	0.997	0.374	0.498	5.1e-122
TAIR|locus:2057961	1286	ABCB1 "ATP-binding cassette B1	0.997	0.370	0.482	5.8e-122

TAIR|locus:2196145 ABCB11 "ATP-binding cassette B11" [Arabidopsis thaliana (taxid:3702)]

 Score = 1807 (641.2 bits), Expect = 2.4e-186, P = 2.4e-186
 Identities = 351/478 (73%), Positives = 402/478 (84%)

Query:     1 VACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVG 60
             VACW++TGERQAARIR  YLKT+LRQDIGFFD ET++GE++ RMSGDTVLIQD++GEKVG
Sbjct:   121 VACWMITGERQAARIRSTYLKTILRQDIGFFDVETNTGEVVGRMSGDTVLIQDAMGEKVG 180

Query:    61 KFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAA 120
             KFIQL++TF+GGFV+A  KGWLLTLVML+SIP + +    M+ ++T+ +SRGQ AY+ AA
Sbjct:   181 KFIQLVSTFVGGFVLAFIKGWLLTLVMLTSIPLLAMAGAAMALIVTRASSRGQAAYAKAA 240

Query:   121 AVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEXXXXXXXXXXXXXXXXSSYS 180
              V EQTIGSIRTVASFTGEKQA+  Y + +T AYKS + +                SSY+
Sbjct:   241 TVVEQTIGSIRTVASFTGEKQAINSYKKFITSAYKSSIQQGFSTGLGLGVMFFVFFSSYA 300

Query:   181 LAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIER 240
             LAIWFGGKMILEKGY GG VINVI  V+ GSMSLGQ SPC++AFAAGQAAAYK+FE I+R
Sbjct:   301 LAIWFGGKMILEKGYTGGAVINVIIIVVAGSMSLGQTSPCVTAFAAGQAAAYKMFETIKR 360

Query:   241 KPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGS 300
             KPLIDAYD NG  L+DIRGDIELKD++FSYP+RP E+IF+GFSL IPSG TAALVG+SGS
Sbjct:   361 KPLIDAYDVNGKVLEDIRGDIELKDVHFSYPARPDEEIFDGFSLFIPSGATAALVGESGS 420

Query:   301 GKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG 360
             GKSTVISLIERFYDP++G VLIDGVNLKEFQLKWIR KIGLVSQEPVLF+SSI +NI YG
Sbjct:   421 GKSTVISLIERFYDPKSGAVLIDGVNLKEFQLKWIRSKIGLVSQEPVLFSSSIMENIAYG 480

Query:   361 KDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420
             K+                 KFID LPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI
Sbjct:   481 KENATVEEIKAATELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 540

Query:   421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
             LLLDEATSALDAESERVVQEALD++M+NRTTVIVAHRLSTVRNAD+IAVIH+GK+VEK
Sbjct:   541 LLLDEATSALDAESERVVQEALDRVMVNRTTVIVAHRLSTVRNADMIAVIHRGKMVEK 598

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2041434 ABCB4 "ATP-binding cassette B4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1800 (638.7 bits), Expect = 1.3e-185, P = 1.3e-185
 Identities = 348/475 (73%), Positives = 400/475 (84%)

Query:     4 WIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFI 63
             W+++GERQAARIR LYLKT+LRQDI FFD +T++GE++ RMSGDTVLIQD++GEKVGK I
Sbjct:   127 WMISGERQAARIRSLYLKTILRQDIAFFDIDTNTGEVVGRMSGDTVLIQDAMGEKVGKAI 186

Query:    64 QLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVA 123
             QLLATF+GGFVIA  +GWLLTLVMLSSIP +V+   +++ VI K ASRGQTAY+ AA V 
Sbjct:   187 QLLATFVGGFVIAFVRGWLLTLVMLSSIPLLVMAGALLAIVIAKTASRGQTAYAKAATVV 246

Query:   124 EQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEXXXXXXXXXXXXXXXXSSYSLAI 183
             EQTIGSIRTVASFTGEKQA++ YN+ L  AYK+GV E                 SY+LA+
Sbjct:   247 EQTIGSIRTVASFTGEKQAISNYNKHLVTAYKAGVIEGGSTGLGLGTLFLVVFCSYALAV 306

Query:   184 WFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPL 243
             W+GGK+IL+KGY GG V+N+I  V+ GSMSLGQ SPC+SAFAAGQAAAYK+FE IER+P 
Sbjct:   307 WYGGKLILDKGYTGGQVLNIIIAVLTGSMSLGQTSPCLSAFAAGQAAAYKMFETIERRPN 366

Query:   244 IDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKS 303
             ID+Y +NG  LDDI+GDIELKD+YF+YP+RP EQIF GFSL I SGTT ALVGQSGSGKS
Sbjct:   367 IDSYSTNGKVLDDIKGDIELKDVYFTYPARPDEQIFRGFSLFISSGTTVALVGQSGSGKS 426

Query:   304 TVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDG 363
             TV+SLIERFYDPQAG+VLIDG+NLKEFQLKWIR KIGLVSQEPVLFT+SIKDNI YGK+ 
Sbjct:   427 TVVSLIERFYDPQAGDVLIDGINLKEFQLKWIRSKIGLVSQEPVLFTASIKDNIAYGKED 486

Query:   364 XXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLL 423
                             KF+D LPQGLDTMVGEHGTQLSGGQKQRIA+ARAILKDPRILLL
Sbjct:   487 ATTEEIKAAAELANASKFVDKLPQGLDTMVGEHGTQLSGGQKQRIAVARAILKDPRILLL 546

Query:   424 DEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
             DEATSALDAESERVVQEALD+IM+NRTTV+VAHRLSTVRNAD+IAVIHQGK+VEK
Sbjct:   547 DEATSALDAESERVVQEALDRIMVNRTTVVVAHRLSTVRNADMIAVIHQGKIVEK 601

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0008559 "xenobiotic-transporting ATPase activity" evidence=IDA

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA

GO:0009735 "response to cytokinin stimulus" evidence=IEP;RCA

GO:0009926 "auxin polar transport" evidence=TAS

GO:0016020 "membrane" evidence=IDA

GO:0009630 "gravitropism" evidence=IMP

GO:0010540 "basipetal auxin transport" evidence=IMP

GO:0010315 "auxin efflux" evidence=IMP

GO:0048767 "root hair elongation" evidence=RCA;IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0000303 "response to superoxide" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009743 "response to carbohydrate stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

TAIR|locus:2196135 ABCB12 "ATP-binding cassette B12" [Arabidopsis thaliana (taxid:3702)]

 Score = 1772 (628.8 bits), Expect = 1.2e-182, P = 1.2e-182
 Identities = 342/478 (71%), Positives = 398/478 (83%)

Query:     1 VACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVG 60
             VACW++TGERQAA+IR  YLKT+LRQDIGFFD ET++GE++ RMSGDTV IQD++GEKVG
Sbjct:   108 VACWMITGERQAAKIRSNYLKTILRQDIGFFDVETNTGEVVGRMSGDTVHIQDAMGEKVG 167

Query:    61 KFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAA 120
             KFIQL++TF+GGF +A +KGWLLTLVML+SIP + +    M+ ++T+ +SRGQ AY+ AA
Sbjct:   168 KFIQLVSTFVGGFALAFAKGWLLTLVMLTSIPFLAMAGAAMALLVTRASSRGQAAYAKAA 227

Query:   121 AVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEXXXXXXXXXXXXXXXXSSYS 180
              V EQTIGSIRTVASFTGEKQA+  Y + +T AYKS + +                SSY+
Sbjct:   228 TVVEQTIGSIRTVASFTGEKQAINSYKKYITSAYKSSIQQGFSTGLGLGVMIYVFFSSYA 287

Query:   181 LAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIER 240
             LAIWFGGKMILEKGY GG VINVI  V+ GSMSLGQ SPC++AFAAGQAAAYK+FE I+R
Sbjct:   288 LAIWFGGKMILEKGYTGGSVINVIIIVVAGSMSLGQTSPCVTAFAAGQAAAYKMFETIKR 347

Query:   241 KPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGS 300
             KPLIDAYD NG  L DIRGDIELKD++FSYP+RP E+IF+GFSL IPSG TAALVG+SGS
Sbjct:   348 KPLIDAYDVNGKVLGDIRGDIELKDVHFSYPARPDEEIFDGFSLFIPSGATAALVGESGS 407

Query:   301 GKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG 360
             GKSTVI+LIERFYDP+AGEVLIDG+NLKEFQLKWIR KIGLV QEPVLF+SSI +NI YG
Sbjct:   408 GKSTVINLIERFYDPKAGEVLIDGINLKEFQLKWIRSKIGLVCQEPVLFSSSIMENIAYG 467

Query:   361 KDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420
             K+                 KFI++LPQGLDT VGEHGTQLSGGQKQRIAIARAILKDPR+
Sbjct:   468 KENATLQEIKVATELANAAKFINNLPQGLDTKVGEHGTQLSGGQKQRIAIARAILKDPRV 527

Query:   421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
             LLLDEATSALD ESERVVQEALD++M+NRTTV+VAHRLSTVRNAD+IAVIH GK+VEK
Sbjct:   528 LLLDEATSALDTESERVVQEALDRVMVNRTTVVVAHRLSTVRNADMIAVIHSGKMVEK 585

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2141350 ABCB3 "ATP-binding cassette B3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1702 (604.2 bits), Expect = 3.2e-175, P = 3.2e-175
 Identities = 329/478 (68%), Positives = 392/478 (82%)

Query:     1 VACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVG 60
             VACW++TGERQAARIR LYLKT+LRQDIGFFD ET +GE++ RMSGDTVLI +++GEKVG
Sbjct:    88 VACWMITGERQAARIRSLYLKTILRQDIGFFDVETSTGEVVGRMSGDTVLILEAMGEKVG 147

Query:    61 KFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAA 120
             KFIQL+ATF+GGFV+A  KGWLLTLVML SIP + +    M  ++T+ +SR Q AY+ A+
Sbjct:   148 KFIQLIATFVGGFVLAFVKGWLLTLVMLVSIPLLAIAGAAMPIIVTRASSREQAAYAKAS 207

Query:   121 AVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEXXXXXXXXXXXXXXXXSSYS 180
              V EQT+GSIRTVASFTGEKQA+  Y E +  AY++ V +                 SY+
Sbjct:   208 TVVEQTLGSIRTVASFTGEKQAMKSYREFINLAYRASVKQGFSMGLGLGVVFFVFFCSYA 267

Query:   181 LAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIER 240
             LAIWFGG+MIL+KGY GG+V+NV+  V+  SMSLGQ +PC++AFAAG+AAAYK+FE IER
Sbjct:   268 LAIWFGGEMILKKGYTGGEVVNVMVTVVASSMSLGQTTPCLTAFAAGKAAAYKMFETIER 327

Query:   241 KPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGS 300
             KP IDA+D NG  L+DIRG+IEL+D+ FSYP+RP E++F GFSL IPSG TAALVG+SGS
Sbjct:   328 KPSIDAFDLNGKVLEDIRGEIELRDVCFSYPARPMEEVFGGFSLLIPSGATAALVGESGS 387

Query:   301 GKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG 360
             GKS+VISLIERFYDP +G VLIDGVNLKEFQLKWIRGKIGLVSQEPVLF+SSI +NI YG
Sbjct:   388 GKSSVISLIERFYDPSSGSVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFSSSIMENIGYG 447

Query:   361 KDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420
             K+                  FID LP+GL+T+VGEHGTQLSGGQKQRIAIARAILKDPRI
Sbjct:   448 KENATVEEIQAAAKLANAANFIDKLPRGLETLVGEHGTQLSGGQKQRIAIARAILKDPRI 507

Query:   421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
             LLLDEATSALDAESERVVQEALD++M++RTTVIVAHRLSTVRNAD+IAVIH+GK+VE+
Sbjct:   508 LLLDEATSALDAESERVVQEALDRVMMSRTTVIVAHRLSTVRNADMIAVIHRGKIVEE 565

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2141365 ABCB5 "ATP-binding cassette B5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1700 (603.5 bits), Expect = 5.3e-175, P = 5.3e-175
 Identities = 329/478 (68%), Positives = 394/478 (82%)

Query:     1 VACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVG 60
             VACW++TGERQAARIR LYLKT+LRQDIGFFD E  +GE++ RMSGDTVLI D++GEKVG
Sbjct:    93 VACWMITGERQAARIRSLYLKTILRQDIGFFDVEMTTGEVVGRMSGDTVLILDAMGEKVG 152

Query:    61 KFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAA 120
             KFIQL++TF+GGFVIA  +GWLLTLVML+SIP + ++   ++ ++T+ +S+ Q AY+ A+
Sbjct:   153 KFIQLISTFVGGFVIAFLRGWLLTLVMLTSIPLLAMSGAAIAIIVTRASSQEQAAYAKAS 212

Query:   121 AVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEXXXXXXXXXXXXXXXXSSYS 180
              V EQT+GSIRTVASFTGEKQA++ Y E +  AYKS V +                S+Y+
Sbjct:   213 NVVEQTLGSIRTVASFTGEKQAMSSYKELINLAYKSNVKQGFVTGLGLGVMFLVFFSTYA 272

Query:   181 LAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIER 240
             L  WFGG+MIL KGY GG VINV+  V+  S++LGQASPC++AF AG+AAAYK+FE IER
Sbjct:   273 LGTWFGGEMILRKGYTGGAVINVMVTVVSSSIALGQASPCLTAFTAGKAAAYKMFETIER 332

Query:   241 KPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGS 300
             +PLID +D NG  L+DIRG+IEL+D+ FSYP+RP E++F GFSL IPSGTT ALVG+SGS
Sbjct:   333 EPLIDTFDLNGKVLEDIRGEIELRDVCFSYPARPKEEVFGGFSLLIPSGTTTALVGESGS 392

Query:   301 GKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG 360
             GKSTVISLIERFYDP +G+VLIDGV+LKEFQLKWIRGKIGLVSQEPVLF+SSI +NI YG
Sbjct:   393 GKSTVISLIERFYDPNSGQVLIDGVDLKEFQLKWIRGKIGLVSQEPVLFSSSIMENIGYG 452

Query:   361 KDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420
             K+G                KFID LP GL+T+VGEHGTQLSGGQKQRIAIARAILKDPRI
Sbjct:   453 KEGATVEEIQAASKLANAAKFIDKLPLGLETLVGEHGTQLSGGQKQRIAIARAILKDPRI 512

Query:   421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
             LLLDEATSALDAESERVVQEALD+IM+NRTTVIVAHRLSTVRNAD+IAVIH+GK+VE+
Sbjct:   513 LLLDEATSALDAESERVVQEALDRIMVNRTTVIVAHRLSTVRNADIIAVIHRGKIVEE 570

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2117656 ABCB9 "ATP-binding cassette B9" [Arabidopsis thaliana (taxid:3702)]

 Score = 1621 (575.7 bits), Expect = 1.2e-166, P = 1.2e-166
 Identities = 313/478 (65%), Positives = 377/478 (78%)

Query:     1 VACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVG 60
             V+CW+VTGERQ+A IRGLYLKT+LRQDIG+FD ET++GE+I RMSGDT+LIQD++GEKVG
Sbjct:    95 VSCWMVTGERQSATIRGLYLKTILRQDIGYFDTETNTGEVIGRMSGDTILIQDAMGEKVG 154

Query:    61 KFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAA 120
             KF QLL TF+GGF IA  KG LL  V+ S IP IV+    MS +++K+A RGQ AY+ A 
Sbjct:   155 KFTQLLCTFLGGFAIAFYKGPLLAGVLCSCIPLIVIAGAAMSLIMSKMAGRGQVAYAEAG 214

Query:   121 AVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEXXXXXXXXXXXXXXXXSSYS 180
              V EQT+G+IRTV +FTGEKQA  KY   L  AYK+ V +                 SY 
Sbjct:   215 NVVEQTVGAIRTVVAFTGEKQATEKYESKLEIAYKTVVQQGLISGFGLGTMLAVIFCSYG 274

Query:   181 LAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIER 240
             LA+W+G K+I+EKGY GG VINVIF V+ G MSLGQ SP ++AFAAG+AAA+K+FE I+R
Sbjct:   275 LAVWYGAKLIMEKGYNGGQVINVIFAVLTGGMSLGQTSPSLNAFAAGRAAAFKMFETIKR 334

Query:   241 KPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGS 300
              P IDAYD +G  L+DIRGDIELKD+YF YP+RP  QIF GFSL +P+G T ALVGQSGS
Sbjct:   335 SPKIDAYDMSGSVLEDIRGDIELKDVYFRYPARPDVQIFAGFSLFVPNGKTVALVGQSGS 394

Query:   301 GKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG 360
             GKSTVISLIERFYDP++G+VLID ++LK+ QLKWIR KIGLVSQEPVLF ++IK+NI YG
Sbjct:   395 GKSTVISLIERFYDPESGQVLIDNIDLKKLQLKWIRSKIGLVSQEPVLFATTIKENIAYG 454

Query:   361 KDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420
             K+                 KFID LPQGLDTMVGEHGTQ+SGGQKQR+AIARAILK+P+I
Sbjct:   455 KEDATDQEIRTAIELANAAKFIDKLPQGLDTMVGEHGTQMSGGQKQRLAIARAILKNPKI 514

Query:   421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
             LLLDEATSALDAESER+VQ+AL  +M NRTTV+VAHRL+T+R AD+IAV+HQGK+VEK
Sbjct:   515 LLLDEATSALDAESERIVQDALVNLMSNRTTVVVAHRLTTIRTADVIAVVHQGKIVEK 572

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2151496 ABCB7 "ATP-binding cassette B7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1551 (551.0 bits), Expect = 3.2e-159, P = 3.2e-159
 Identities = 297/478 (62%), Positives = 374/478 (78%)

Query:     1 VACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVG 60
             V+CW+VTGERQ+ RIR LYLKT+LRQDIGFFD ET++GE+I RMSGDT+LIQDS+GEKVG
Sbjct:    97 VSCWMVTGERQSTRIRRLYLKTILRQDIGFFDTETNTGEVIGRMSGDTILIQDSMGEKVG 156

Query:    61 KFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAA 120
             KF QL+++F+GGF +A   G  LTL +L  +P IV T G M+ +++K A R Q AY+ A 
Sbjct:   157 KFTQLVSSFVGGFTVAFIVGMKLTLALLPCVPLIVGTGGAMTYIMSKKAQRVQLAYTEAG 216

Query:   121 AVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEXXXXXXXXXXXXXXXXSSYS 180
              V +Q +GSIRTV +FTGEKQ++ KY + L  AYKS V +                 +Y 
Sbjct:   217 NVVQQAVGSIRTVVAFTGEKQSMGKYEKKLEIAYKSMVKQGLYSGLGIGIMMVVVYCTYG 276

Query:   181 LAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIER 240
              AIW+G + I+EKGY GG V+NVI  ++ G M+LGQ  P +++FAAG AAAYK+FE I+R
Sbjct:   277 FAIWYGARQIIEKGYTGGQVMNVITSILTGGMALGQTLPSLNSFAAGTAAAYKMFETIKR 336

Query:   241 KPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGS 300
             KP IDAYD +G  L++I+GDIEL+D+YF YP+RP  QIF GFSL++P+G T ALVGQSGS
Sbjct:   337 KPKIDAYDMSGEVLEEIKGDIELRDVYFRYPARPDVQIFVGFSLTVPNGMTVALVGQSGS 396

Query:   301 GKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG 360
             GKSTVISLIERFYDP++GEVLIDG++LK+FQ+KWIR KIGLVSQEP+LF ++I++NI YG
Sbjct:   397 GKSTVISLIERFYDPESGEVLIDGIDLKKFQVKWIRSKIGLVSQEPILFATTIRENIVYG 456

Query:   361 KDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420
             K                   FID LPQGL+TMVGEHGTQLSGGQKQRIAIARAILK+P+I
Sbjct:   457 KKDASDQEIRTALKLANASNFIDKLPQGLETMVGEHGTQLSGGQKQRIAIARAILKNPKI 516

Query:   421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
             LLLDEATSALDAESER+VQ+AL K+M++RTTV+VAHRL+T+R AD+IAV+ QGK++EK
Sbjct:   517 LLLDEATSALDAESERIVQDALVKLMLSRTTVVVAHRLTTIRTADMIAVVQQGKVIEK 574

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

DICTYBASE|DDB_G0291714 abcB3 "ABC transporter B family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 1209 (430.6 bits), Expect = 5.7e-123, P = 5.7e-123
 Identities = 236/483 (48%), Positives = 328/483 (67%)

Query:     4 WIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFI 63
             W++ GERQ +RIR  YL++ LRQ+IG+FD    + E+  R++ DTVL +++IGEKVG+FI
Sbjct:   250 WMIAGERQTSRIRREYLESTLRQEIGWFDTNK-ANELSSRINSDTVLFEEAIGEKVGRFI 308

Query:    64 QLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVA 123
                +TF+ GFVI  +KGW LTLV+ S  P + +     + ++T++   GQ AYS A  VA
Sbjct:   309 HFFSTFVAGFVIGFTKGWQLTLVITSVSPLLAIGGFFTAKMMTQMTKLGQEAYSRAGGVA 368

Query:   124 EQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEXXXXXXXXXXXXXXXXSSYSLAI 183
             E+ IGSIRTVA+F+GEK A+ KY+ +L  A   G                    +Y+LA 
Sbjct:   369 EENIGSIRTVATFSGEKLAIDKYSNNLKDARTVGYKRSFFNGLGLGFVQFVILGTYALAF 428

Query:   184 WFGGKMILEK--------GYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLF 235
             W+G  +I  K         + GGDV++V F V+IG+ S+GQASPC++ FA G+ AAYK+F
Sbjct:   429 WYGSTLISNKVTNSVSDRPWTGGDVVSVFFAVIIGATSIGQASPCLALFAQGRGAAYKIF 488

Query:   236 EAIERKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALV 295
             + I+R+   + + + G+K + + G+IE KD+ F YPSRP   IFNGF+L I  G T  LV
Sbjct:   489 QVIDRQSKANPFSTRGIKPETLSGEIEFKDVGFHYPSRPDVPIFNGFNLKIKPGQTVGLV 548

Query:   296 GQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKD 355
             G SG GKST+ISL+ERFYDP  GE+L+DG ++++F ++ +R KIGLV+QEPVLF ++I +
Sbjct:   549 GDSGGGKSTIISLLERFYDPCQGEILLDGEDIRKFNVRGLRQKIGLVNQEPVLFATTISE 608

Query:   356 NINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL 415
             NI YGK+G                 FI  LPQG +T+VGE G Q+SGGQ+QRIAIARA++
Sbjct:   609 NIRYGKEGATQDEIEEAAKLANAHSFISQLPQGYNTLVGEKGVQMSGGQRQRIAIARAVI 668

Query:   416 KDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKL 475
             K+P ILLLDE+TSALDAES ++VQEALD +M  RTT+++AH LST+RNAD+I  I +G  
Sbjct:   669 KNPNILLLDESTSALDAESTKLVQEALDVLMKGRTTIVIAHNLSTIRNADVIIYIKKGVA 728

Query:   476 VEK 478
             VE+
Sbjct:   729 VER 731

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS;IBA

GO:0006810 "transport" evidence=IEA;ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA;IBA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA;IBA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IBA

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2120805 ABCB2 "ATP-binding cassette B2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1200 (427.5 bits), Expect = 5.1e-122, P = 5.1e-122
 Identities = 238/477 (49%), Positives = 322/477 (67%)

Query:     1 VACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVG 60
             VACW+ TGERQAA++R  YL+++L QDI  FD E  +GE+I  ++ D +++QD++ EKVG
Sbjct:   141 VACWMHTGERQAAKMRRAYLRSMLSQDISLFDTEASTGEVISAITSDILVVQDALSEKVG 200

Query:    61 KFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAA 120
              F+  ++ FI GF I  +  W ++LV LS +P I L  G+ + V   L +R + +Y  A 
Sbjct:   201 NFLHYISRFIAGFAIGFTSVWQISLVTLSIVPLIALAGGIYAFVAIGLIARVRKSYIKAG 260

Query:   121 AVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEXXXXXXXXXXXXXXXXSSYS 180
              +AE+ IG++RTV +FTGE++AV  Y E+L   YK G                    S++
Sbjct:   261 EIAEEVIGNVRTVQAFTGEERAVRLYREALENTYKYGRKAGLTKGLGLGSMHCVLFLSWA 320

Query:   181 LAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIER 240
             L +WF   ++ +    GG     +  V+I  +SLGQA+P ISAF   +AAAY +F+ IER
Sbjct:   321 LLVWFTSVVVHKDIADGGKSFTTMLNVVIAGLSLGQAAPDISAFVRAKAAAYPIFKMIER 380

Query:   241 KPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGS 300
               +      +G KL  + G I+ KD  FSYPSRP   IF+  +L+IP+G   ALVG SGS
Sbjct:   381 NTVTKTSAKSGRKLGKVDGHIQFKDATFSYPSRPDVVIFDRLNLAIPAGKIVALVGGSGS 440

Query:   301 GKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG 360
             GKSTVISLIERFY+P +G VL+DG N+ E  +KW+RG+IGLV+QEP LF ++I++NI YG
Sbjct:   441 GKSTVISLIERFYEPISGAVLLDGNNISELDIKWLRGQIGLVNQEPALFATTIRENILYG 500

Query:   361 KDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420
             KD                  FI++LP+G +T VGE G QLSGGQKQRIAI+RAI+K+P I
Sbjct:   501 KDDATAEEITRAAKLSEAISFINNLPEGFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 560

Query:   421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
             LLLDEATSALDAESE+ VQEALD++M+ RTTV+VAHRLSTVRNAD+IAV+H+GK+VE
Sbjct:   561 LLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTVRNADIIAVVHEGKIVE 617

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IBA

GO:0006200 "ATP catabolic process" evidence=IBA

GO:0006810 "transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0010315 "auxin efflux" evidence=IBA

GO:0010329 "auxin efflux transmembrane transporter activity" evidence=IBA

GO:0010540 "basipetal auxin transport" evidence=IBA

GO:0010541 "acropetal auxin transport" evidence=IBA

GO:0016021 "integral to membrane" evidence=IEA;IBA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS;IBA

GO:0055085 "transmembrane transport" evidence=IEA;IBA

GO:0016020 "membrane" evidence=IDA

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

TAIR|locus:2057961 ABCB1 "ATP-binding cassette B1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1182 (421.1 bits), Expect = 5.8e-122, Sum P(2) = 5.8e-122
 Identities = 230/477 (48%), Positives = 318/477 (66%)

Query:     1 VACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVG 60
             ++CW+ +GERQ  ++R  YL+  L QDI FFD E  + +++  ++ D V++QD+I EK+G
Sbjct:   108 ISCWMWSGERQTTKMRIKYLEAALNQDIQFFDTEVRTSDVVFAINTDAVMVQDAISEKLG 167

Query:    61 KFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAA 120
              FI  +ATF+ GF++  +  W L LV L+ +P I +  G+ +T ++KL+++ Q + S A 
Sbjct:   168 NFIHYMATFVSGFIVGFTAVWQLALVTLAVVPLIAVIGGIHTTTLSKLSNKSQESLSQAG 227

Query:   121 AVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEXXXXXXXXXXXXXXXXSSYS 180
              + EQT+  IR V +F GE +A   Y+ +L  A K G                     Y+
Sbjct:   228 NIVEQTVVQIRVVMAFVGESRASQAYSSALKIAQKLGYKTGLAKGMGLGATYFVVFCCYA 287

Query:   181 LAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIER 240
             L +W+GG ++      GG  I  +F VMIG ++LGQ++P ++AFA  + AA K+F  I+ 
Sbjct:   288 LLLWYGGYLVRHHLTNGGLAIATMFAVMIGGLALGQSAPSMAAFAKAKVAAAKIFRIIDH 347

Query:   241 KPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGS 300
             KP I+    +GV+LD + G +ELK++ FSYPSRP  +I N F LS+P+G T ALVG SGS
Sbjct:   348 KPTIERNSESGVELDSVTGLVELKNVDFSYPSRPDVKILNNFCLSVPAGKTIALVGSSGS 407

Query:   301 GKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG 360
             GKSTV+SLIERFYDP +G+VL+DG +LK  +L+W+R +IGLVSQEP LF +SIK+NI  G
Sbjct:   408 GKSTVVSLIERFYDPNSGQVLLDGQDLKTLKLRWLRQQIGLVSQEPALFATSIKENILLG 467

Query:   361 KDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420
             +                   FI  LP G DT VGE G QLSGGQKQRIAIARA+LK+P I
Sbjct:   468 RPDADQVEIEEAARVANAHSFIIKLPDGFDTQVGERGLQLSGGQKQRIAIARAMLKNPAI 527

Query:   421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
             LLLDEATSALD+ESE++VQEALD+ MI RTT+I+AHRLST+R ADL+AV+ QG + E
Sbjct:   528 LLLDEATSALDSESEKLVQEALDRFMIGRTTLIIAHRLSTIRKADLVAVLQQGSVSE 584

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006200 "ATP catabolic process" evidence=IBA

GO:0006810 "transport" evidence=IEA

GO:0010540 "basipetal auxin transport" evidence=IBA

GO:0010541 "acropetal auxin transport" evidence=IBA

GO:0016021 "integral to membrane" evidence=IEA;IBA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS;IBA

GO:0055085 "transmembrane transport" evidence=IEA;IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0008361 "regulation of cell size" evidence=RCA;IMP

GO:0009637 "response to blue light" evidence=RCA;IMP

GO:0009639 "response to red or far red light" evidence=IMP

GO:0009640 "photomorphogenesis" evidence=RCA;IMP

GO:0009733 "response to auxin stimulus" evidence=RCA;IMP

GO:0009958 "positive gravitropism" evidence=IGI

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA;IMP

GO:0009926 "auxin polar transport" evidence=RCA;IMP;TAS

GO:0010329 "auxin efflux transmembrane transporter activity" evidence=IDA

GO:0009624 "response to nematode" evidence=IEP

GO:0048443 "stamen development" evidence=IGI;RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0007155 "cell adhesion" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0048364 "root development" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M1Q9	AB21B_ARATH	No assigned EC number	0.7531	0.9958	0.3672	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.3.44	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	478
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	1e-134
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	1e-129
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	1e-126
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	1e-123
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	1e-107
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	1e-102
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	1e-101
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	8e-96
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	5e-94
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	2e-93
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	4e-91
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	3e-85
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	2e-82
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	1e-80
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	3e-80
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	1e-75
COG5265	497	COG5265, ATM1, ABC-type transport system involved	2e-75
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	1e-71
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	3e-70
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	1e-69
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	1e-67
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	8e-67
COG4988	559	COG4988, CydD, ABC-type transport system involved	2e-65
cd03244	221	cd03244, ABCC_MRP_domain2, ATP-binding cassette do	6e-63
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	2e-60
TIGR03797	686	TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste	1e-59
COG4987	573	COG4987, CydC, ABC-type transport system involved	3e-58
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	9e-58
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	3e-57
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	2e-55
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	3e-54
PRK10789	569	PRK10789, PRK10789, putative multidrug transporter	2e-53
PRK10790	592	PRK10790, PRK10790, putative multidrug transporter	5e-52
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	4e-48
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	5e-45
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	1e-43
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	3e-43
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	9e-43
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	2e-42
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	2e-42
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	7e-42
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	3e-41
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	5e-41
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	2e-40
cd03369	207	cd03369, ABCC_NFT1, ATP-binding cassette domain 2	2e-40
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	2e-40
pfam00664	274	pfam00664, ABC_membrane, ABC transporter transmemb	3e-39
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	6e-39
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	2e-38
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	3e-38
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	4e-38
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	5e-38
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	2e-37
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	2e-37
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	3e-37
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	9e-37
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	4e-36
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	5e-36
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	6e-36
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	9e-36
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	2e-35
COG1123	539	COG1123, COG1123, ATPase components of various ABC	2e-35
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	2e-35
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	4e-35
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	6e-35
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	1e-34
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	1e-34
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	2e-34
PRK11153	343	PRK11153, metN, DL-methionine transporter ATP-bind	2e-34
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	6e-34
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	1e-33
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	2e-33
cd03288	257	cd03288, ABCC_SUR2, ATP-binding cassette domain 2	3e-33
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	3e-33
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	5e-33
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	5e-33
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	2e-32
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	5e-32
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	6e-32
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	2e-31
PRK10744	260	PRK10744, pstB, phosphate transporter ATP-binding	2e-31
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	4e-31
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	5e-31
PRK14236	272	PRK14236, PRK14236, phosphate transporter ATP-bind	8e-31
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	9e-31
PRK14262	250	PRK14262, PRK14262, phosphate ABC transporter ATP-	5e-30
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	6e-30
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	2e-29
PRK14235	267	PRK14235, PRK14235, phosphate transporter ATP-bind	4e-29
COG1123	539	COG1123, COG1123, ATPase components of various ABC	6e-29
PRK14240	250	PRK14240, PRK14240, phosphate transporter ATP-bind	6e-29
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	1e-28
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	1e-28
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	1e-28
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	1e-28
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	1e-28
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	2e-28
PRK14254	285	PRK14254, PRK14254, phosphate ABC transporter ATP-	2e-28
PRK14253	249	PRK14253, PRK14253, phosphate ABC transporter ATP-	2e-28
PRK14237	267	PRK14237, PRK14237, phosphate transporter ATP-bind	3e-28
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	3e-28
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	3e-28
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	5e-28
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	5e-28
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	6e-28
PRK14245	250	PRK14245, PRK14245, phosphate ABC transporter ATP-	6e-28
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	7e-28
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	9e-28
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	9e-28
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	2e-27
PRK14242	253	PRK14242, PRK14242, phosphate transporter ATP-bind	3e-27
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	3e-27
PRK14244	251	PRK14244, PRK14244, phosphate ABC transporter ATP-	4e-27
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	4e-27
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	6e-27
PRK14269	246	PRK14269, PRK14269, phosphate ABC transporter ATP-	7e-27
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	8e-27
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	1e-26
cd03289	275	cd03289, ABCC_CFTR2, ATP-binding cassette domain 2	1e-26
PRK14270	251	PRK14270, PRK14270, phosphate ABC transporter ATP-	2e-26
PRK14266	250	PRK14266, PRK14266, phosphate ABC transporter ATP-	2e-26
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	3e-26
pfam00005	119	pfam00005, ABC_tran, ABC transporter	4e-26
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	4e-26
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	1e-25
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	4e-25
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	4e-25
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	4e-25
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	5e-25
PRK14264	305	PRK14264, PRK14264, phosphate ABC transporter ATP-	7e-25
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	8e-25
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	8e-25
PRK14261	253	PRK14261, PRK14261, phosphate ABC transporter ATP-	9e-25
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	9e-25
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	1e-24
PRK10070	400	PRK10070, PRK10070, glycine betaine transporter AT	1e-24
PRK14259	269	PRK14259, PRK14259, phosphate ABC transporter ATP-	1e-24
cd03290	218	cd03290, ABCC_SUR1_N, ATP-binding cassette domain	3e-24
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	3e-24
PRK14247	250	PRK14247, PRK14247, phosphate ABC transporter ATP-	3e-24
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	4e-24
PRK14249	251	PRK14249, PRK14249, phosphate ABC transporter ATP-	4e-24
PRK14251	251	PRK14251, PRK14251, phosphate ABC transporter ATP-	4e-24
PRK13642	277	PRK13642, cbiO, cobalt transporter ATP-binding sub	5e-24
PRK14241	258	PRK14241, PRK14241, phosphate transporter ATP-bind	5e-24
PRK14268	258	PRK14268, PRK14268, phosphate ABC transporter ATP-	6e-24
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	7e-24
PRK14238	271	PRK14238, PRK14238, phosphate transporter ATP-bind	7e-24
PRK14257	329	PRK14257, PRK14257, phosphate ABC transporter ATP-	8e-24
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	8e-24
COG4598	256	COG4598, HisP, ABC-type histidine transport system	1e-23
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	1e-23
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	1e-23
PRK14272	252	PRK14272, PRK14272, phosphate ABC transporter ATP-	2e-23
PRK13646	286	PRK13646, cbiO, cobalt transporter ATP-binding sub	2e-23
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	2e-23
PRK14275	286	PRK14275, PRK14275, phosphate ABC transporter ATP-	2e-23
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	3e-23
PRK11308	327	PRK11308, dppF, dipeptide transporter ATP-binding	3e-23
PRK14246	257	PRK14246, PRK14246, phosphate ABC transporter ATP-	3e-23
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	4e-23
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	4e-23
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	5e-23
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	6e-23
PRK14274	259	PRK14274, PRK14274, phosphate ABC transporter ATP-	6e-23
PRK14267	253	PRK14267, PRK14267, phosphate ABC transporter ATP-	6e-23
PRK13649	280	PRK13649, cbiO, cobalt transporter ATP-binding sub	6e-23
PRK10247	225	PRK10247, PRK10247, putative ABC transporter ATP-b	7e-23
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	8e-23
TIGR02770	230	TIGR02770, nickel_nikD, nickel import ATP-binding	9e-23
PRK14273	254	PRK14273, PRK14273, phosphate ABC transporter ATP-	1e-22
PRK11432	351	PRK11432, fbpC, ferric transporter ATP-binding sub	1e-22
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	1e-22
PRK14252	265	PRK14252, PRK14252, phosphate ABC transporter ATP-	2e-22
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	2e-22
PRK14256	252	PRK14256, PRK14256, phosphate ABC transporter ATP-	2e-22
PRK14243	264	PRK14243, PRK14243, phosphate transporter ATP-bind	2e-22
PRK14239	252	PRK14239, PRK14239, phosphate transporter ATP-bind	2e-22
TIGR02769	265	TIGR02769, nickel_nikE, nickel import ATP-binding	3e-22
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	3e-22
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	3e-22
PRK14255	252	PRK14255, PRK14255, phosphate ABC transporter ATP-	3e-22
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	3e-22
PRK14248	268	PRK14248, PRK14248, phosphate ABC transporter ATP-	3e-22
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	5e-22
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	6e-22
PRK10419	268	PRK10419, nikE, nickel transporter ATP-binding pro	7e-22
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	9e-22
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	1e-21
cd03291	282	cd03291, ABCC_CFTR1, ATP-binding cassette domain o	1e-21
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	1e-21
PRK13634	290	PRK13634, cbiO, cobalt transporter ATP-binding sub	2e-21
PRK11247	257	PRK11247, ssuB, aliphatic sulfonates transport ATP	2e-21
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	2e-21
PRK14265	274	PRK14265, PRK14265, phosphate ABC transporter ATP-	3e-21
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	4e-21
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	4e-21
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	4e-21
PRK13644	274	PRK13644, cbiO, cobalt transporter ATP-binding sub	4e-21
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	5e-21
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	6e-21
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	6e-21
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	7e-21
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	7e-21
PRK14258	261	PRK14258, PRK14258, phosphate ABC transporter ATP-	7e-21
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	8e-21
PRK11144	352	PRK11144, modC, molybdate transporter ATP-binding	1e-20
PRK14260	259	PRK14260, PRK14260, phosphate ABC transporter ATP-	1e-20
PRK11124	242	PRK11124, artP, arginine transporter ATP-binding s	2e-20
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	2e-20
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	2e-20
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	3e-20
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	3e-20
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	3e-20
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	3e-20
PRK13641	287	PRK13641, cbiO, cobalt transporter ATP-binding sub	4e-20
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	5e-20
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	5e-20
PRK14271	276	PRK14271, PRK14271, phosphate ABC transporter ATP-	6e-20
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	6e-20
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	7e-20
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	2e-19
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	2e-19
PRK10535	648	PRK10535, PRK10535, macrolide transporter ATP-bind	2e-19
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	2e-19
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	2e-19
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	6e-19
PRK13645	289	PRK13645, cbiO, cobalt transporter ATP-binding sub	9e-19
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	1e-18
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	1e-18
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	8e-18
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	1e-17
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	1e-17
PRK14263	261	PRK14263, PRK14263, phosphate ABC transporter ATP-	1e-17
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	2e-17
PRK13633	280	PRK13633, PRK13633, cobalt transporter ATP-binding	2e-17
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	4e-17
PRK13631	320	PRK13631, cbiO, cobalt transporter ATP-binding sub	4e-17
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	5e-17
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	7e-17
PRK13643	288	PRK13643, cbiO, cobalt transporter ATP-binding sub	1e-16
COG4167	267	COG4167, SapF, ABC-type antimicrobial peptide tran	1e-16
PRK11000	369	PRK11000, PRK11000, maltose/maltodextrin transport	1e-16
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	2e-16
PRK10908	222	PRK10908, PRK10908, cell division protein FtsE; Pr	2e-16
PRK11831	269	PRK11831, PRK11831, putative ABC transporter ATP-b	3e-16
PRK10418	254	PRK10418, nikD, nickel transporter ATP-binding pro	4e-16
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	4e-16
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	4e-16
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	4e-16
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	5e-16
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	5e-16
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	6e-16
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	7e-16
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	7e-16
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	8e-16
PRK11650	356	PRK11650, ugpC, glycerol-3-phosphate transporter A	9e-16
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	1e-15
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	2e-15
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	2e-15
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	2e-15
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	2e-15
PRK10253	265	PRK10253, PRK10253, iron-enterobactin transporter	3e-15
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	3e-15
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	4e-15
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	4e-15
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	5e-15
PRK11701	258	PRK11701, phnK, phosphonate C-P lyase system prote	7e-15
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	1e-14
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	1e-14
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	1e-14
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	2e-14
TIGR01194	555	TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo	2e-14
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	2e-14
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	2e-14
PRK10584	228	PRK10584, PRK10584, putative ABC transporter ATP-b	3e-14
TIGR03415	382	TIGR03415, ABC_choXWV_ATP, choline ABC transporter	3e-14
PRK13638	271	PRK13638, cbiO, cobalt transporter ATP-binding sub	3e-14
PRK15079	331	PRK15079, PRK15079, oligopeptide ABC transporter A	5e-14
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	6e-14
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	6e-14
COG4615	546	COG4615, PvdE, ABC-type siderophore export system,	7e-14
PRK09544	251	PRK09544, znuC, high-affinity zinc transporter ATP	1e-13
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	1e-13
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	1e-13
cd03215	182	cd03215, ABC_Carb_Monos_II, Second domain of the A	2e-13
COG4133	209	COG4133, CcmA, ABC-type transport system involved	2e-13
COG1134	249	COG1134, TagH, ABC-type polysaccharide/polyol phos	2e-13
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	3e-13
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	3e-13
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	4e-13
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	5e-13
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	2e-12
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	2e-12
PRK09984	262	PRK09984, PRK09984, phosphonate/organophosphate es	2e-12
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	2e-12
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	3e-12
PRK15112	267	PRK15112, PRK15112, antimicrobial peptide ABC syst	5e-12
PRK13540	200	PRK13540, PRK13540, cytochrome c biogenesis protei	6e-12
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	8e-12
PRK09473	330	PRK09473, oppD, oligopeptide transporter ATP-bindi	1e-11
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	1e-11
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	2e-11
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	2e-11
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	3e-11
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	3e-11
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	3e-11
COG4138	248	COG4138, BtuD, ABC-type cobalamin transport system	4e-11
cd03237	246	cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin	9e-11
PRK10522	547	PRK10522, PRK10522, multidrug transporter membrane	1e-10
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	2e-10
cd03271	261	cd03271, ABC_UvrA_II, ATP-binding cassette domain	2e-10
TIGR01978	243	TIGR01978, sufC, FeS assembly ATPase SufC	2e-10
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	2e-10
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	5e-10
PRK09580	248	PRK09580, sufC, cysteine desulfurase ATPase compon	5e-10
cd03236	255	cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin	5e-10
PRK11022	326	PRK11022, dppD, dipeptide transporter ATP-binding	5e-10
PRK11300	255	PRK11300, livG, leucine/isoleucine/valine transpor	7e-10
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	8e-10
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	2e-09
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	2e-09
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	3e-09
CHL00131	252	CHL00131, ycf16, sulfate ABC transporter protein;	3e-09
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	3e-09
PRK11614	237	PRK11614, livF, leucine/isoleucine/valine transpor	4e-09
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	7e-09
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	7e-09
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	8e-09
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	1e-08
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	1e-08
TIGR00954	659	TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra	1e-08
PRK13547	272	PRK13547, hmuV, hemin importer ATP-binding subunit	1e-08
COG2401	593	COG2401, COG2401, ABC-type ATPase fused to a predi	2e-08
smart00382	148	smart00382, AAA, ATPases associated with a variety	2e-08
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	4e-08
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	4e-08
PRK13538	204	PRK13538, PRK13538, cytochrome c biogenesis protei	5e-08
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	9e-08
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	1e-07
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	1e-07
PRK13541	195	PRK13541, PRK13541, cytochrome c biogenesis protei	5e-07
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	6e-07
cd03232	192	cd03232, ABCG_PDR_domain2, Second domain of the pl	9e-07
cd03233	202	cd03233, ABCG_PDR_domain1, First domain of the ple	2e-06
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	4e-06
PRK13545	549	PRK13545, tagH, teichoic acids export protein ATP-	4e-06
PRK15093	330	PRK15093, PRK15093, antimicrobial peptide ABC tran	5e-06
TIGR00630	925	TIGR00630, uvra, excinuclease ABC, A subunit	7e-06
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	7e-06
COG0178	935	COG0178, UvrA, Excinuclease ATPase subunit [DNA re	8e-06
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	1e-05
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	1e-05
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	2e-05
PRK13543	214	PRK13543, PRK13543, cytochrome c biogenesis protei	2e-05
cd03238	176	cd03238, ABC_UvrA, ATP-binding cassette domain of	2e-05
cd03222	177	cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett	2e-05
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	3e-05
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	6e-05
COG4170	330	COG4170, SapD, ABC-type antimicrobial peptide tran	9e-05
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	1e-04
PRK13546	264	PRK13546, PRK13546, teichoic acids export protein	1e-04
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	3e-04
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	7e-04
cd03227	162	cd03227, ABC_Class2, ATP-binding cassette domain o	7e-04
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	0.001
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	0.001
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	0.002
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	0.002
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	0.003
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.003
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	0.004
pfam13558	79	pfam13558, SbcCD_C, Putative exonuclease SbcCD, C	0.004
PRK00635	1809	PRK00635, PRK00635, excinuclease ABC subunit A; Pr	0.004

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score =  386 bits (994), Expect = e-134
 Identities = 140/218 (64%), Positives = 177/218 (81%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           IE K++ F YPSRP   I  G SL+IP G T ALVG SG GKSTV+SL+ERFYDP +GE+
Sbjct: 1   IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAK 380
           L+DGV++++  L+W+R +IGLVSQEPVLF  +I +NI YGK  A+  E+  AA+ AN   
Sbjct: 61  LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120

Query: 381 FIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQE 440
           FI SLP G DT+VGE G+QLSGGQKQRIAIARA+L++P+ILLLDEATSALDAESE++VQE
Sbjct: 121 FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180

Query: 441 ALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
           ALD+ M  RTT+++AHRLST+RNADLIAV+  G++VE+
Sbjct: 181 ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQ 218

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score =  391 bits (1006), Expect = e-129
 Identities = 184/479 (38%), Positives = 278/479 (58%), Gaps = 13/479 (2%)

Query: 3   CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKF 62
            +  T  R   RIR    ++LLRQD+GFFD E  +GE+  R+S DT  +  S+   V   
Sbjct: 224 SFNYTMARINLRIREDLFRSLLRQDLGFFD-ENKTGELTSRLSSDTQTMSRSLSLNVNVL 282

Query: 63  IQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAV 122
           ++ L   +G     L     LT+V L ++P + L   V       L+   Q A + A  V
Sbjct: 283 LRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQV 342

Query: 123 AEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYSLA 182
           AE+ +  +RTV SF  E+   +++ E+L +  +    + LA        + +      L 
Sbjct: 343 AEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLV 402

Query: 183 IWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAG--QA--AAYKLFEAI 238
           +++GG+++L      G++++     ++    LG+A   +S   +G  QA  A+ K+FE +
Sbjct: 403 LYYGGQLVLTGKVSSGNLVSF----LLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYL 458

Query: 239 ERKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQS 298
           +RKP I    +  +   ++ G IE +D+ FSYP+RP   +  G + ++  G   ALVG S
Sbjct: 459 DRKPNIP--LTGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPS 516

Query: 299 GSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNIN 358
           GSGKSTV +L++  Y P  G+VL+DGV L ++   ++  ++ LV QEPVLF+ S+++NI 
Sbjct: 517 GSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIA 576

Query: 359 YGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDP 418
           YG       EIMAAA+ ANA  FI   P G DT VGE G+QLSGGQKQRIAIARA+++ P
Sbjct: 577 YGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKP 636

Query: 419 RILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
           R+L+LDEATSALDAE E+++QE   +   +RT +++AHRLSTV  AD I V+ +G +VE
Sbjct: 637 RVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVE 693

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score =  377 bits (971), Expect = e-126
 Identities = 168/475 (35%), Positives = 271/475 (57%), Gaps = 6/475 (1%)

Query: 3   CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKF 62
                G++  A +R    + LLR  + FFDK   SG++I R++ D   + + +   +   
Sbjct: 75  LGSRLGQKIVADLRRDLFEKLLRLPLSFFDK-AKSGDLISRLTNDVEAVSNLVSTVLVLV 133

Query: 63  IQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAV 122
              +   IG  V+  S  W L L++L  +P + L   +++    KL+ R + A     A 
Sbjct: 134 FTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNAR 193

Query: 123 AEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYSLA 182
             +++  IR + +F  E + + ++ E+  +  ++ +       L       ++     L 
Sbjct: 194 LLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLV 253

Query: 183 IWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP 242
           +  GG ++L      G +   I  ++     + Q    +S      AAA +LFE ++ +P
Sbjct: 254 LALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEP 313

Query: 243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGK 302
            ++        L D  G IE +++ FSYP    + +    S SI  G   A+VG SGSGK
Sbjct: 314 EVED---PPDPLKDTIGSIEFENVSFSYP--GKKPVLKDISFSIEPGEKVAIVGPSGSGK 368

Query: 303 STVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKD 362
           ST+I L+ R YDP +GE+LIDG+++++  L  +R +IG+VSQ+P+LF+ +I++NI  G+ 
Sbjct: 369 STLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRP 428

Query: 363 GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILL 422
            A+  EI  A +LANA +FI +LP G DT+VGE G  LSGGQ+QR+AIARA+L++P IL+
Sbjct: 429 DATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILI 488

Query: 423 LDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
           LDEATSALD E+E ++Q+AL K++  RTT+I+AHRLST++NAD I V+  G++VE
Sbjct: 489 LDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVE 543

Length = 567

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score =  371 bits (954), Expect = e-123
 Identities = 182/470 (38%), Positives = 277/470 (58%), Gaps = 1/470 (0%)

Query: 8   GERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLA 67
           GER  A IR      L+     FFDK   SGE++ R++ DT L+Q  IG  +   ++   
Sbjct: 86  GERVVADIRRAVFAHLISLSPSFFDK-NRSGEVVSRLTTDTTLLQSVIGSSLSMALRNAL 144

Query: 68  TFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTI 127
             IGG ++       LT ++L ++P ++L   +    + KL+   Q   + A + A +T+
Sbjct: 145 MCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETL 204

Query: 128 GSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYSLAIWFGG 187
           G+IRTV +F  E    +++  ++ KAY++         L       + F +    +W G 
Sbjct: 205 GAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGA 264

Query: 188 KMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPLIDAY 247
             ++      G +   +F  ++ + S+G  S           AA +L E ++ +P I A 
Sbjct: 265 HDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAP 324

Query: 248 DSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVIS 307
                    +RG+IE + + F+YP+RP +   +G +L++  G T ALVG SG+GKST+  
Sbjct: 325 AHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQ 384

Query: 308 LIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIA 367
           L+ RFYDPQ+G +L+DGV+L++     +R ++ LV Q+PVLF +S+ +NI YG+  A+  
Sbjct: 385 LLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDE 444

Query: 368 EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 427
           E+ AAA  A+A +FI +LP+G DT +GE G  LSGGQ+QRIAIARAILKD  ILLLDEAT
Sbjct: 445 EVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEAT 504

Query: 428 SALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
           SALDAESE++VQ+AL+ +M  RTT+I+AHRL+TV  AD I V+ QG++V 
Sbjct: 505 SALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVA 554

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score =  316 bits (813), Expect = e-107
 Identities = 122/217 (56%), Positives = 163/217 (75%), Gaps = 1/217 (0%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           +E K++ F YP   G  +    SL IP+G T ALVG SGSGKST+++LI RFYD  +G +
Sbjct: 1   VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAK 380
           LIDG +++++ L  +R +IGLVSQ+  LF  ++ +NI YG+ GA+  E+  AA  ANA +
Sbjct: 60  LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119

Query: 381 FIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQE 440
           FI  LP+G DT++GE G +LSGGQ+QRIAIARA+LKDP IL+LDEATSALD ESER+VQ 
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179

Query: 441 ALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
           AL+++M NRTT ++AHRLST+ NAD I V+  GK+VE
Sbjct: 180 ALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVE 216

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score =  320 bits (822), Expect = e-102
 Identities = 165/477 (34%), Positives = 261/477 (54%), Gaps = 12/477 (2%)

Query: 5   IVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSI-GEKVGKFI 63
              G+R    + G + + LLR  + +F+K    GEII R+  +   I++ + G  +   I
Sbjct: 219 AHLGKRLDLELSGRFFRHLLRLPLSYFEK-RSVGEIISRVR-ELEQIREFLTGSILTLII 276

Query: 64  QLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVA 123
            LL   I   V+ L   W LTL++L++IP  VL   +   ++ +   +     +   +  
Sbjct: 277 DLLFALIFLAVMFLY-SWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFL 335

Query: 124 EQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYSLAI 183
            +TI  I TV +   E +  ++++  L K    G      A +     + +   S  L +
Sbjct: 336 VETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLIL 395

Query: 184 WFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAY---KLFEAIER 240
           WFG  ++LE     G    ++   M+    +   +     +   Q A     +L + ++ 
Sbjct: 396 WFGAILVLEGELTLG---QLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDT 452

Query: 241 KPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGS 300
            P  +  D   + L  ++G+IE +++ F Y       +    SL IP G   A+VG+SGS
Sbjct: 453 PPEQEG-DKTLIHLPKLQGEIEFENVSFRYGPDDPPVL-EDLSLEIPPGEKVAIVGRSGS 510

Query: 301 GKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG 360
           GKST++ L+   Y PQ G +L+DGV+L +  L  +R ++G V Q+P LF+ SI++NI  G
Sbjct: 511 GKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALG 570

Query: 361 KDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420
              A+  EI+ AA+LA A +FI++LP G DT VGE G  LSGGQ+QR+A+ARA+L  P+I
Sbjct: 571 NPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKI 630

Query: 421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
           LLLDEATSALD E+E ++ + L +I+  RT +I+AHRLST+R+AD I V+ QGK+VE
Sbjct: 631 LLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVE 687

Length = 709

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score =  314 bits (806), Expect = e-101
 Identities = 163/465 (35%), Positives = 258/465 (55%), Gaps = 8/465 (1%)

Query: 15  IRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFV 74
           IR    + LL   + FFD++  +G ++ R++ D+  +  +  +     ++   T IG F+
Sbjct: 89  IRVRMFEKLLGLPVSFFDRQP-TGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFI 147

Query: 75  IALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVA 134
           + L   W LTL+++  +P + +    +S  + +++   Q +      VAE+T+   R V 
Sbjct: 148 VLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVK 207

Query: 135 SFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKG 194
            F G+     +++    +  +  +    A  +       +A  + ++ ++          
Sbjct: 208 LFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGS 267

Query: 195 YKGGDVINVIFCVMIGSMS-LGQASPCISAFAAGQAAAYKLFEAIERKPLIDAYDSNGVK 253
              GD        MI  +  L   +   +    G AAA  LF  ++  P  D        
Sbjct: 268 LTAGD-FTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDT---GTRA 323

Query: 254 LDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFY 313
           ++  RGD+E +++ F YP R      +  SL I  G T ALVG+SGSGKST+++LI RFY
Sbjct: 324 IERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFY 382

Query: 314 DPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGK-DGASIAEIMAA 372
           +P +G++L+DG +L ++ L  +R ++ LVSQ+ VLF  +I +NI YG+ + A  AEI  A
Sbjct: 383 EPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERA 442

Query: 373 AELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 432
              A A  F+D LP GLDT +GE+G  LSGGQ+QR+AIARA+LKD  IL+LDEATSALD 
Sbjct: 443 LAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDN 502

Query: 433 ESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
           ESER+VQ AL+++M  RTT+++AHRLST+  AD I V+  G++VE
Sbjct: 503 ESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVE 547

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score =  300 bits (770), Expect = 8e-96
 Identities = 158/459 (34%), Positives = 255/459 (55%), Gaps = 24/459 (5%)

Query: 30  FFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLLTLVMLS 89
           FFDK++ +G ++ R++ D+  +  S    +   ++  A+ IG F++     W L+L+++ 
Sbjct: 115 FFDKQS-TGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIV 173

Query: 90  SIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNES 149
             P + +   V+S     ++   Q         AEQ +   + V  F G++    ++++ 
Sbjct: 174 IAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKV 233

Query: 150 LTKAYKSGVHEGLAAGLGFGAFTFVAFSSYSLAIWF-----GGKMILEKGYKGGDVINVI 204
             +  + G+    A+ +       +A    SLA+ F         +++    G   I V+
Sbjct: 234 SNRMRQQGMKMVSASSISDPIIQLIA----SLALAFVLYAASFPSVMDTLTAG--TITVV 287

Query: 205 FCVMIGSM----SLGQASPCISAFAAGQAAAYKLFEAIERKPLIDAYDSNGVKLDDIRGD 260
           F  MI  M    SL   +   + F  G AA   LF  ++ +      D     ++  +GD
Sbjct: 288 FSSMIALMRPLKSLTNVN---AQFQRGMAACQTLFAILDLEQ---EKDEGKRVIERAKGD 341

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           IE +++ F+YP +         +  IP+G T ALVG+SGSGKST+ +L+ RFYD   GE+
Sbjct: 342 IEFRNVTFTYPGKE-VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEI 400

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG-KDGASIAEIMAAAELANAA 379
           L+DG +L+++ L  +R ++ LVSQ   LF  +I +NI Y   +  S  +I  AA +A A 
Sbjct: 401 LLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAM 460

Query: 380 KFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQ 439
            FI+ +  GLDT++GE+G  LSGGQ+QRIAIARA+L+D  IL+LDEATSALD ESER +Q
Sbjct: 461 DFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQ 520

Query: 440 EALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
            ALD++  NRT++++AHRLST+  AD I V+  G++VE+
Sbjct: 521 AALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVER 559

Length = 582

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score =  284 bits (728), Expect = 5e-94
 Identities = 109/217 (50%), Positives = 149/217 (68%), Gaps = 2/217 (0%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           IE +++ F+Y   PG  +    S +IP+G   A+VG SGSGKST++ L+ RFYD  +G +
Sbjct: 1   IEFENVTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAK 380
           LIDG +++E  L  +R  IG+V Q+ VLF  +I  NI YG+  A+  E++ AA+ A    
Sbjct: 59  LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHD 118

Query: 381 FIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQE 440
            I   P G DT+VGE G +LSGG+KQR+AIARAILK+P ILLLDEATSALD  +ER +Q 
Sbjct: 119 KIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQA 178

Query: 441 ALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
           AL  +   RTT+++AHRLST+ NAD I V+  G++VE
Sbjct: 179 ALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVE 215

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score =  282 bits (723), Expect = 2e-93
 Identities = 104/220 (47%), Positives = 162/220 (73%), Gaps = 2/220 (0%)

Query: 259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG 318
           G+IE +++ FSY     + +    + SI  G T A+VG +G+GK+T+I+L+ RFYDPQ G
Sbjct: 1   GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58

Query: 319 EVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANA 378
           ++LIDG+++++   K +R  IG+V Q+  LF+ +I +NI  G+  A+  E++ AA+ A A
Sbjct: 59  QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGA 118

Query: 379 AKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVV 438
             FI  LP G DT++GE+G  LS G++Q +AIARA+L+DP+IL+LDEATS +D E+E+++
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178

Query: 439 QEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
           QEAL+K+M  RT++I+AHRLST++NAD I V+  GK++E+
Sbjct: 179 QEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEE 218

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score =  288 bits (739), Expect = 4e-91
 Identities = 174/438 (39%), Positives = 240/438 (54%), Gaps = 42/438 (9%)

Query: 62  FIQLLATFIGGFV---IALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASR----GQT 114
             + LAT +   V   +AL   W L+LV+      +VL  G++ T+IT L  R    GQ 
Sbjct: 134 MREHLATLVALVVLLPLALFMNWRLSLVL------VVL--GIVYTLITTLVMRKTKDGQA 185

Query: 115 A----YSIAAAVAEQTIGSIRTVASFT---GEKQAVAKYNESLTKAYKSGVHE--GLAAG 165
           A    Y    A     IG++  V S+     E QA+    ++L  A +  V     LA+ 
Sbjct: 186 AVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAA-QMPVLSWWALASV 244

Query: 166 LGFGAFTFVAFSSYSLAIWFGGKMILEKGYKG-GDVINVI-FC-VMIGSMSLGQASPCIS 222
           L   A T        LAI   G  +++KG    G+V+  + F  ++IG   L Q    I+
Sbjct: 245 LNRAASTITM-----LAILVLGAALVQKGQLRVGEVVAFVGFATLLIGR--LDQVVAFIN 297

Query: 223 AFAAGQAAAYKLFEAIERKPLIDAYDSNGVK-LDDIRGDIELKDIYFSYP-SRPGEQIFN 280
                     + FE  +  P  D  D  G   L  ++G +E  D+ FSY  SR G     
Sbjct: 298 QVFMAAPKLEEFFEVEDAVP--DVRDPPGAIDLGRVKGAVEFDDVSFSYDNSRQG---VE 352

Query: 281 GFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340
             S     G T A+VG +G+GKST+I+L++R +DPQ+G +LIDG +++      +R  I 
Sbjct: 353 DVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIA 412

Query: 341 LVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQL 400
           +V Q+  LF  SI+DNI  G+  A+  E+ AAAE A A  FI+  P G DT+VGE G QL
Sbjct: 413 VVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQL 472

Query: 401 SGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLST 460
           SGG++QR+AIARA+LKDP IL+LDEATSALD E+E  V+ ALD++M  RTT I+AHRLST
Sbjct: 473 SGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLST 532

Query: 461 VRNADLIAVIHQGKLVEK 478
           VRNAD I V   G++VE 
Sbjct: 533 VRNADRILVFDNGRVVES 550

Length = 588

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score =  261 bits (668), Expect = 3e-85
 Identities = 110/221 (49%), Positives = 156/221 (70%)

Query: 255 DDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD 314
           D ++G ++ +++ F+YP+RP   +    S ++  G   ALVG SGSGKSTV++L+E FY 
Sbjct: 6   DHLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ 65

Query: 315 PQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAE 374
           PQ G+VL+DG  + +++ K++  K+ LV QEPVLF  S++DNI YG    S   +  AA+
Sbjct: 66  PQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQ 125

Query: 375 LANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 434
            A+A  FI  L  G DT VGE G+QLSGGQKQR+AIARA++++P++L+LDEATSALDAES
Sbjct: 126 KAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAES 185

Query: 435 ERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKL 475
           E+ VQ+AL      RT +++AHRLSTV  AD I V+  G++
Sbjct: 186 EQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score =  251 bits (644), Expect = 2e-82
 Identities = 92/214 (42%), Positives = 129/214 (60%), Gaps = 43/214 (20%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           IE K++ FSYP RP + +    SL+I  G   A+VG SGSGKST++ L+ R YDP +GE+
Sbjct: 1   IEFKNVSFSYPGRP-KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAK 380
           LIDGV+L++  L+ +R  I  V Q+P LF+ +I++NI                       
Sbjct: 60  LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------------- 96

Query: 381 FIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQE 440
                              LSGGQ+QRIAIARA+L+DP IL+LDEATSALD E+E ++ E
Sbjct: 97  -------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE 137

Query: 441 ALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGK 474
           AL  +   +T +++AHRLST+R+AD I V+  G+
Sbjct: 138 ALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score =  263 bits (675), Expect = 1e-80
 Identities = 141/416 (33%), Positives = 221/416 (53%), Gaps = 45/416 (10%)

Query: 83  LTLVMLSSIPA-IVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQ 141
           LT V++ S+    +L+  V   +  ++  + + + +  + + E   G I T+ +   E Q
Sbjct: 280 LTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTG-IETIKATATEPQ 338

Query: 142 AVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVI 201
              +++  L     +         +   A   +   ++++ +WFG  +++          
Sbjct: 339 FQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIG--------- 389

Query: 202 NVIFCVMIGSMSLGQASPCISAFA--AGQ--------AAAYKLFE----AIERKPLI--- 244
                   G++S GQ    + AF   AG+        A  ++ F+    A+ER   I   
Sbjct: 390 --------GALSPGQ----LVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNS 437

Query: 245 --DAYDSNGVKLDDIRGDIELKDIYFSY-PSRPGEQIFNGFSLSIPSGTTAALVGQSGSG 301
             +   +    L ++RG I  ++I F Y P  P  ++ +  +L I  G    +VG SGSG
Sbjct: 438 PTEPRSAGLAALPELRGAITFENIRFRYAPDSP--EVLSNLNLDIKPGEFIGIVGPSGSG 495

Query: 302 KSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGK 361
           KST+  L++R Y PQ G+VL+DGV+L      W+R ++G+V QE VLF+ SI+DNI    
Sbjct: 496 KSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCN 555

Query: 362 DGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRIL 421
            GA    ++ AA+LA A  FI  LPQG +T VGE G  LSGGQ+QRIAIARA++ +PRIL
Sbjct: 556 PGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRIL 615

Query: 422 LLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
           + DEATSALD ESE ++   + +I   RT +I+AHRLSTVR  D I V+ +G++ E
Sbjct: 616 IFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAE 671

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score =  271 bits (694), Expect = 3e-80
 Identities = 171/525 (32%), Positives = 269/525 (51%), Gaps = 81/525 (15%)

Query: 19  YLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVG-KFIQLL---ATFIGGFV 74
           +LK++  QD  F D    S     +++ D     + +   +G KFI +    + F+G ++
Sbjct: 136 FLKSVFYQDGQFHDNNPGS-----KLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYI 190

Query: 75  IALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSI-AAAVAEQTIGSIRTV 133
            +L K   LTL +    P I +  GV+     K+  +    Y+    ++ E+ +  IRTV
Sbjct: 191 WSLFKNARLTLCITCVFPLIYI-CGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTV 249

Query: 134 ASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYSLAIWFGGKMILE- 192
            S+ GEK  + K+N S     K  +       L  G       +SY+   W+G ++I+  
Sbjct: 250 VSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISD 309

Query: 193 -------KGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPLID 245
                    + GG VI+++  V+I    L    P I+ +     A   L+E I RKPL++
Sbjct: 310 LSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVE 369

Query: 246 AYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTV 305
             D +G KL DI+  I+ K++ F Y +R   +I+   + ++  G T A VG+SG GKST+
Sbjct: 370 NND-DGKKLKDIK-KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTI 427

Query: 306 ISLIERFYDPQAGEVLI-DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG---- 360
           + LIER YDP  G+++I D  NLK+  LKW R KIG+VSQ+P+LF++SIK+NI Y     
Sbjct: 428 LKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSL 487

Query: 361 -----------KDGAS---------------------IAEIMAAAELANAAK-------- 380
                      +DG                       ++    + EL    K        
Sbjct: 488 KDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDS 547

Query: 381 -------------FIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 427
                        F+ +LP   +T+VG + ++LSGGQKQRI+IARAI+++P+IL+LDEAT
Sbjct: 548 EVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEAT 607

Query: 428 SALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRNADLIAVI 470
           S+LD +SE +VQ+ ++ +    NR T+I+AHRLST+R A+ I V+
Sbjct: 608 SSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVL 652

Length = 1466

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score =  236 bits (605), Expect = 1e-75
 Identities = 110/218 (50%), Positives = 146/218 (66%), Gaps = 3/218 (1%)

Query: 261 IELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 319
           I  + + F Y  +P G  I +  SL I  G    +VG+SGSGKST+  LI+RFY P+ G 
Sbjct: 1   ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58

Query: 320 VLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAA 379
           VL+DG +L      W+R ++G+V QE VLF  SI+DNI     G S+  ++ AA+LA A 
Sbjct: 59  VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAH 118

Query: 380 KFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQ 439
            FI  LP+G DT+VGE G  LSGGQ+QRIAIARA++ +PRIL+ DEATSALD ESE  + 
Sbjct: 119 DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178

Query: 440 EALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
             +  I   RT +I+AHRLSTV+NAD I V+ +G++VE
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVE 216

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score =  244 bits (626), Expect = 2e-75
 Identities = 146/377 (38%), Positives = 211/377 (55%), Gaps = 28/377 (7%)

Query: 115 AYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSG--VHEGLAAGLGFGAFT 172
           A S A A A  ++ +  TV  F  E+    +Y+ +L    K+   VH  L   L FG   
Sbjct: 117 ADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLV-LNFGQ-- 173

Query: 173 FVAFSSYSLAIWFGGKMILEKGYKG-GDVINVIFCVMIGSMSLGQASPCISAFAA---GQ 228
              FS+    +     + +E+G    GD++NV   +   S+ L         F+     Q
Sbjct: 174 TAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPL-----NFLGFSYREIRQ 228

Query: 229 A-----AAYKLFEA-IERKPLIDAYDSNGVKLDDIRGDIELKDIYFSY-PSRPGEQIFNG 281
           A       + L +   E     DA     V      G +   ++ F+Y P RP   I NG
Sbjct: 229 ALTDMEKMFDLLDVEAEVSDAPDAPPLWPV----RLGAVAFINVSFAYDPRRP---ILNG 281

Query: 282 FSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGL 341
            S +IP G T A+VG+SG+GKST++ L+ RFYD  +G + IDG ++++   + +R  IG+
Sbjct: 282 ISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGI 341

Query: 342 VSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLS 401
           V Q+ VLF  +I  NI YG+  A+  E+ AAAE A    FI SLP+G DT VGE G +LS
Sbjct: 342 VPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLS 401

Query: 402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTV 461
           GG+KQR+AIAR ILK+P IL+LDEATSALD  +E+ +Q AL ++   RTT+++AHRLST+
Sbjct: 402 GGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTI 461

Query: 462 RNADLIAVIHQGKLVEK 478
            +AD I V+  G++VE+
Sbjct: 462 IDADEIIVLDNGRIVER 478

Length = 497

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score =  237 bits (606), Expect = 1e-71
 Identities = 155/426 (36%), Positives = 240/426 (56%), Gaps = 22/426 (5%)

Query: 64  QLLATFIGGFVI---ALSKGWLLTLV-MLSSIPAIVLTAGVMSTVITKLASRGQTAYSIA 119
           Q LATF+  F++   A +  W L++V M+  I  I++   VM       A+     +++ 
Sbjct: 136 QHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVF 195

Query: 120 AAVAEQTIGSIRTVASF---TGEKQAVAKYNESLTKA-YKSGVHEGLAAGLGFGAFTFVA 175
             V++ +I ++  V S+     E  A+ ++  +L  A Y       LA+GL   A T   
Sbjct: 196 KHVSD-SISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISM 254

Query: 176 FSSYSLAIWFGGKMILEKGYKG-GDVINVI-FC-VMIGSMSLGQASPCISAFAAGQAAAY 232
                + I   G +++ KG    G+VI  I F  ++IG   L Q S  I+     +A   
Sbjct: 255 -----MCILVIGTVLVIKGELSVGEVIAFIGFANLLIGR--LDQMSGFITQIFEARAKLE 307

Query: 233 KLFEAIERKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTA 292
             F+ +E         ++  +L +++G +E + I F + +    Q     S    +G T 
Sbjct: 308 DFFD-LEDSVFQREEPADAPELPNVKGAVEFRHITFEFAN--SSQGVFDVSFEAKAGQTV 364

Query: 293 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSS 352
           A+VG +G+GK+T+I+L++R YDP  G++LIDG+++     + +R  I  V Q+  LF  S
Sbjct: 365 AIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRS 424

Query: 353 IKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR 412
           I++NI  G++GA+  E+  AA+ A A  FI     G DT+VGE G +LSGG++QR+AIAR
Sbjct: 425 IRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIAR 484

Query: 413 AILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQ 472
           AILK+  IL+LDEATSALD E+E  V+ A+D +  NRTT I+AHRLSTVRNADL+  + Q
Sbjct: 485 AILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQ 544

Query: 473 GKLVEK 478
           G+L+EK
Sbjct: 545 GRLIEK 550

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score =  222 bits (568), Expect = 3e-70
 Identities = 91/218 (41%), Positives = 138/218 (63%), Gaps = 1/218 (0%)

Query: 259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG 318
           G IE +++ FSYP++    + N  SL+I +G   A++G+ GSGKST++ L+   Y P +G
Sbjct: 1   GRIEFRNVSFSYPNQEIPALDNV-SLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59

Query: 319 EVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANA 378
            VL+DG ++++     +R  IG V Q+  LF  +++DNI  G   A    I+ AAELA  
Sbjct: 60  SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGV 119

Query: 379 AKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVV 438
             F++  P GLD  +GE G  LSGGQ+Q +A+ARA+L DP ILLLDE TSA+D  SE  +
Sbjct: 120 TDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179

Query: 439 QEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLV 476
           +E L +++ ++T +I+ HR S +   D I V+  G++V
Sbjct: 180 KERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIV 217

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score =  234 bits (599), Expect = 1e-69
 Identities = 130/426 (30%), Positives = 221/426 (51%), Gaps = 19/426 (4%)

Query: 59  VGKFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSI 118
           +   I L    +   VIA+  G L+  V L +IP I+L   ++   +++LA       + 
Sbjct: 264 LTALIDLPFALLFLLVIAIIGGPLV-WVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQ 322

Query: 119 AAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVH-EGLAAGLGFGAFTFVAFS 177
             AV  +++  + T+ +   E +   ++ +++    +SG+    L+      A       
Sbjct: 323 RNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLV 382

Query: 178 SYSLAIWFGGKMILEKGYKGGDVI--NVIFCVMIGS---MSLGQASPCISAFAAGQAA-- 230
           S ++ +  G  +I +     G++    +I CVM+       LGQ +         Q A  
Sbjct: 383 SVAIVVV-GVYLISD-----GELTMGGLIACVMLSGRALAPLGQLA---GLLTRYQQAKT 433

Query: 231 AYKLFEAIERKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGT 290
           A +  + + + P+     +  +    ++G+IE +++ F+YP +    + +  SL+I  G 
Sbjct: 434 ALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQETPAL-DNVSLTIRPGE 492

Query: 291 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFT 350
             A++G+ GSGKST++ L+   Y P  G VL+DGV++++     +R  IG V Q+P LF 
Sbjct: 493 KVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFY 552

Query: 351 SSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAI 410
            +++DNI  G   A   EI+ AAELA   +F+   P GLD  +GE G  LSGGQ+Q +A+
Sbjct: 553 GTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVAL 612

Query: 411 ARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVI 470
           ARA+L+DP ILLLDE TSA+D  SE   ++ L + +  +T V+V HR S +   D I V+
Sbjct: 613 ARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVM 672

Query: 471 HQGKLV 476
             G++V
Sbjct: 673 DNGRIV 678

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score =  229 bits (586), Expect = 1e-67
 Identities = 137/494 (27%), Positives = 227/494 (45%), Gaps = 76/494 (15%)

Query: 23  LLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFI--QLLATFIGGFVIA---- 76
           +LR  + FF +  H+G+I  R+          + ++V +F+  QL  T +   ++     
Sbjct: 237 ILRLPVRFFAQR-HAGDIASRVQ---------LNDQVAEFLSGQLATTALDAVMLVFYAL 286

Query: 77  --LSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVA 134
             L    +LTL+ ++     VL   ++S        R Q        VA   + SI T+ 
Sbjct: 287 LMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLK 346

Query: 135 SFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAF-TFVAFSSYSLAIWFGGKMILEK 193
           +   E    +++     K   +    G+   +  G   T +   + +L +  GG      
Sbjct: 347 ASGLESDFFSRWAGYQAKLLNAQQELGVLTQI-LGVLPTLLTSLNSALILVVGG------ 399

Query: 194 GYKGGDVINVIFCVMIGSMSLG-----QASPCISAFAA------GQAAAYKLFEA----- 237
                        VM G +++G     Q+   +S+F        G     +  E      
Sbjct: 400 -----------LRVMEGQLTIGMLVAFQS--LMSSFLEPVNNLVGFGGTLQELEGDLNRL 446

Query: 238 -----------IERKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSI 286
                      +E +    A      +L    G +EL++I F Y S     +   FSL++
Sbjct: 447 DDVLRNPVDPLLEEEEAPAAGSEPSPRL---SGYVELRNITFGY-SPLEPPLIENFSLTL 502

Query: 287 PSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEP 346
             G   ALVG SGSGKST+  L+   Y P +GE+L DG+  +E   + +   + +V Q+ 
Sbjct: 503 QPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDI 562

Query: 347 VLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQ 406
            LF  +++DN+         A+++ A + A     I S P G D  + E G  LSGGQ+Q
Sbjct: 563 FLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQ 622

Query: 407 RIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINR--TTVIVAHRLSTVRNA 464
           R+ IARA++++P IL+LDEATSALD E+E+++ + L +    R  T +IVAHRLST+R+ 
Sbjct: 623 RLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRLSTIRDC 678

Query: 465 DLIAVIHQGKLVEK 478
           D I V+ +GK+V++
Sbjct: 679 DEIIVLERGKVVQR 692

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score =  223 bits (570), Expect = 8e-67
 Identities = 102/248 (41%), Positives = 138/248 (55%), Gaps = 4/248 (1%)

Query: 223 AFAAGQAAAYKLFEAIERKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGF 282
           A A G AAA  LF  ++  P   A  +           +E   +  +YP R         
Sbjct: 286 ARADGVAAAEALFAVLDAAPRPLAGKAPVTAAPAPS--LEFSGVSVAYPGRR--PALRPV 341

Query: 283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLV 342
           S ++P G   ALVG SG+GKST+++L+  F DP  G + ++GV L +      R +I  V
Sbjct: 342 SFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWV 401

Query: 343 SQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSG 402
            Q P LF  +I +NI   +  AS AEI  A E A   +F+ +LPQGLDT +GE G  LSG
Sbjct: 402 PQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSG 461

Query: 403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVR 462
           GQ QR+A+ARA L+D  +LLLDE T+ LDAE+E  V EAL  +   RT ++V HRL+   
Sbjct: 462 GQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAA 521

Query: 463 NADLIAVI 470
            AD I V+
Sbjct: 522 LADRIVVL 529

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score =  220 bits (562), Expect = 2e-65
 Identities = 99/253 (39%), Positives = 151/253 (59%), Gaps = 3/253 (1%)

Query: 225 AAGQAAAYKLFEAIERKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSL 284
           AAG+AAA KLF  +E         S           IE+     S+    G+   +  +L
Sbjct: 285 AAGEAAADKLFTLLESPV--ATPGSGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNL 342

Query: 285 SIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQ 344
           +I +G   ALVG SG+GKST+++L+  F  P  GE+ ++G++L++   +  R +I  VSQ
Sbjct: 343 TIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQ 402

Query: 345 EPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQ 404
            P LF  +I++NI   +  AS  EI+AA + A   +F+   P GLDT++GE G  LSGGQ
Sbjct: 403 NPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQ 461

Query: 405 KQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNA 464
            QR+A+ARA+L    +LLLDE T+ LDAE+E+++ +AL ++   +T +++ HRL    +A
Sbjct: 462 AQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADA 521

Query: 465 DLIAVIHQGKLVE 477
           D I V+  G+LVE
Sbjct: 522 DRIVVLDNGRLVE 534

Length = 559

>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein

 Score =  203 bits (519), Expect = 6e-63
 Identities = 83/221 (37%), Positives = 143/221 (64%), Gaps = 6/221 (2%)

Query: 259 GDIELKDIYFSYPSRPGEQ-IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA 317
           GDIE K++   Y  RP    +    S SI  G    +VG++GSGKS+++  + R  +  +
Sbjct: 1   GDIEFKNVSLRY--RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS 58

Query: 318 GEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNIN-YGKDGASIAEIMAAAELA 376
           G +LIDGV++ +  L  +R +I ++ Q+PVLF+ +I+ N++ +G+   S  E+  A E  
Sbjct: 59  GSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGE--YSDEELWQALERV 116

Query: 377 NAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESER 436
              +F++SLP GLDT+V E G  LS GQ+Q + +ARA+L+  +IL+LDEAT+++D E++ 
Sbjct: 117 GLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 176

Query: 437 VVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
           ++Q+ + +   + T + +AHRL T+ ++D I V+ +G++VE
Sbjct: 177 LIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVE 217

The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score =  206 bits (528), Expect = 2e-60
 Identities = 87/249 (34%), Positives = 151/249 (60%), Gaps = 4/249 (1%)

Query: 229 AAAYKLFEAIERKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPS 288
           A+A ++ E  E+KP +    ++    D  +  + L ++ F+YP +P + +  G SL I +
Sbjct: 309 ASARRINEITEQKPEVTFPTTSTAAAD--QVSLTLNNVSFTYPDQP-QPVLKGLSLQIKA 365

Query: 289 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVL 348
           G   AL+G++G GKST++ L+ R +DPQ GE+L++G  + ++    +R  I +VSQ   L
Sbjct: 366 GEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHL 425

Query: 349 FTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRI 408
           F+++++DN+      AS   ++   +     K ++   +GL+  +GE G QLSGG+++R+
Sbjct: 426 FSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRL 484

Query: 409 AIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIA 468
            IARA+L D  +LLLDE T  LDAE+ER + E L +   N+T +++ HRL+ +   D I 
Sbjct: 485 GIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRIC 544

Query: 469 VIHQGKLVE 477
           V+  G+++E
Sbjct: 545 VMDNGQIIE 553

Length = 574

>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein

 Score =  207 bits (528), Expect = 1e-59
 Identities = 136/477 (28%), Positives = 228/477 (47%), Gaps = 53/477 (11%)

Query: 23  LLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKG-- 80
           LLR  + FF + + +G++  R  G +      I   +      L T + G    L+ G  
Sbjct: 219 LLRLPVSFFRQYS-TGDLASRAMGIS-----QIRRILS--GSTLTTLLSGIFALLNLGLM 270

Query: 81  ----WLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQT------IGSI 130
               W L LV ++     +    V+  +  +   R      ++  ++  T      I  +
Sbjct: 271 FYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLL---ELSGKISGLTVQLINGISKL 327

Query: 131 RTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVA----FSSYSLAIWFG 186
           R   +   E +A A++ +  ++  K    E  A  +      F A     +S +L     
Sbjct: 328 RVAGA---ENRAFARWAKLFSRQRK---LELSAQRIENLLTVFNAVLPVLTSAAL-FAAA 380

Query: 187 GKMILEKGYKGGDVI--NVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIER-KPL 243
             ++   G   G  +  N  F    G+++           +    +   +    ER KP+
Sbjct: 381 ISLLGGAGLSLGSFLAFNTAFGSFSGAVT---------QLSNTLISILAVIPLWERAKPI 431

Query: 244 IDA---YDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGS 300
           ++A    D        + G IE+  + F Y    G  I +  SL I  G   A+VG SGS
Sbjct: 432 LEALPEVDEAKTDPGKLSGAIEVDRVTFRY-RPDGPLILDDVSLQIEPGEFVAIVGPSGS 490

Query: 301 GKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG 360
           GKST++ L+  F  P++G V  DG +L    ++ +R ++G+V Q   L + SI +NI  G
Sbjct: 491 GKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIA-G 549

Query: 361 KDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420
               ++ E   AA +A  A+ I ++P G+ T++ E G  LSGGQ+QR+ IARA+++ PRI
Sbjct: 550 GAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRI 609

Query: 421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
           LL DEATSALD  ++ +V E+L+++ + R  +++AHRLST+RNAD I V+  G++V+
Sbjct: 610 LLFDEATSALDNRTQAIVSESLERLKVTR--IVIAHRLSTIRNADRIYVLDAGRVVQ 664

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score =  201 bits (513), Expect = 3e-58
 Identities = 111/465 (23%), Positives = 201/465 (43%), Gaps = 48/465 (10%)

Query: 37  SGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLLTLVMLSSIPA--I 94
           SG+++ R+  D   + +        +++++A  +   V+       L+    S   A  +
Sbjct: 114 SGDLLNRLVADVDALDN-------LYLRVIAPAVVALVLIAVVTIGLSF--FSIPLALLL 164

Query: 95  VLTAGVMSTVITKLASRG----------------QTAYSIAAAVAEQTIGSIRTVASFTG 138
            L   ++  +I  L  R                           AE  I        F  
Sbjct: 165 GLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLI--------FGA 216

Query: 139 EKQAVAKYNESLTKAYKSGVHEGLAAGL-GFGAFTFVAFSSYSLAIWFGGKMILEKGYKG 197
           E         +     K+   +    GL               L +W       + G   
Sbjct: 217 EDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAA----QVGAGA 272

Query: 198 GDVINVIFCVMIGSMSLGQASP-CISAFA---AGQAAAYKLFEAIERKPLIDAYDSNGVK 253
                    +++   +L    P    AF       A+A +L + +++KP +        +
Sbjct: 273 LAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVT---FPDEQ 329

Query: 254 LDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFY 313
                  +EL+++ F+YP +   +    F+L++  G   A++G+SGSGKST++ L+   +
Sbjct: 330 TATTGQALELRNVSFTYPGQQ-TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW 388

Query: 314 DPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAA 373
           DPQ G + ++GV +     + +R  I +++Q   LF+ +++DN+      AS  E+ AA 
Sbjct: 389 DPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAAL 448

Query: 374 ELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 433
           +     K ++S P GL+T +GE G +LSGG+++R+A+ARA+L D  + LLDE T  LD  
Sbjct: 449 QQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPI 508

Query: 434 SERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
           +ER V   L +    +T ++V HRL  +   D I V+  GK++E+
Sbjct: 509 TERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEE 553

Length = 573

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score =  202 bits (516), Expect = 9e-58
 Identities = 145/503 (28%), Positives = 235/503 (46%), Gaps = 65/503 (12%)

Query: 5   IVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKV-GKFI 63
            V G+R +  I   Y+K L    + FF     +GEI+ R + D   I D++   +   F+
Sbjct: 221 NVLGQRLSIDIILSYIKHLFELPMSFFSTR-RTGEIVSRFT-DASSIIDALASTILSLFL 278

Query: 64  QLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVA 123
            +    I G  +   +  LL L+ L SIP   +   +      KL      A ++  +  
Sbjct: 279 DMWILVIVGLFLVR-QNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSI 337

Query: 124 EQTIGSIRTVASFTGEKQAVAK--------YNESLTKAYKSGVHEGLAAGLGFGAFTFVA 175
            + +  I T+ S T E +  +K         N+S          + + A         + 
Sbjct: 338 IEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVI- 396

Query: 176 FSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQA---SPCISAF-------- 224
                  +W G                  + VM G ++LGQ    +  +S F        
Sbjct: 397 -------LWTGA-----------------YLVMRGKLTLGQLITFNALLSYFLTPLENII 432

Query: 225 ------AAGQAAAYKLFEAIERKPLIDAYDSNGVKLD---DIRGDIELKDIYFSYPSRPG 275
                  A + A  +L E      L+D+   N  K     ++ GDI + D+ +SY    G
Sbjct: 433 NLQPKLQAARVANNRLNEVY----LVDSEFINKKKRTELNNLNGDIVINDVSYSYGY--G 486

Query: 276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI 335
             I +  SL+I   +   +VG SGSGKST+  L+  F+  ++GE+L++G +LK+     +
Sbjct: 487 SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTL 546

Query: 336 RGKIGLVSQEPVLFTSSIKDNINYG-KDGASIAEIMAAAELANAAKFIDSLPQGLDTMVG 394
           R  I  + QEP +F+ SI +N+  G K+  S  EI AA E+A     I+++P G  T + 
Sbjct: 547 RQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELS 606

Query: 395 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIV 454
           E G+ +SGGQKQRIA+ARA+L D ++L+LDE+TS LD  +E+ +   L   + ++T + V
Sbjct: 607 EEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN-LQDKTIIFV 665

Query: 455 AHRLSTVRNADLIAVIHQGKLVE 477
           AHRLS  + +D I V+  GK++E
Sbjct: 666 AHRLSVAKQSDKIIVLDHGKIIE 688

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score =  198 bits (507), Expect = 3e-57
 Identities = 74/196 (37%), Positives = 124/196 (63%), Gaps = 1/196 (0%)

Query: 283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLV 342
           + ++P+G   ALVG SG+GK+++++ +  F  P  G + I+G+ L+E   +  R  +  V
Sbjct: 370 NFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWV 428

Query: 343 SQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSG 402
            Q P L   +++DN+  G   AS  ++  A E A  ++F+  LPQGLDT +G+    LS 
Sbjct: 429 GQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSV 488

Query: 403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVR 462
           GQ QR+A+ARA+L+  ++LLLDE T++LDA SE++V +AL+     +TT++V H+L  + 
Sbjct: 489 GQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLA 548

Query: 463 NADLIAVIHQGKLVEK 478
             D I V+  G++V++
Sbjct: 549 QWDQIWVMQDGQIVQQ 564

Length = 588

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score =  199 bits (506), Expect = 2e-55
 Identities = 117/351 (33%), Positives = 182/351 (51%), Gaps = 59/351 (16%)

Query: 180  SLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIE 239
            S A WFG  +I        D +  +F  +      G+           + +  K +  I 
Sbjct: 1082 SFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLII 1141

Query: 240  RKPLIDAYDSNGVKL---DDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVG 296
            RK  ID  D+ G+++   +DI+G IE+ D+ F Y SRP   I+   + S  S  T A+VG
Sbjct: 1142 RKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVG 1201

Query: 297  QSGSGKSTVISLIERFYDPQAGEVLI-------DGVNLKEFQ------------------ 331
            ++GSGKSTV+SL+ RFYD +    ++       D  N +++Q                  
Sbjct: 1202 ETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLT 1261

Query: 332  -----------------------------LKWIRGKIGLVSQEPVLFTSSIKDNINYGKD 362
                                         LK +R    +VSQEP+LF  SI +NI +GK+
Sbjct: 1262 KEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE 1321

Query: 363  GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILL 422
             A+  ++  A + A   +FI+SLP   DT VG +G  LSGGQKQRIAIARA+L++P+ILL
Sbjct: 1322 DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILL 1381

Query: 423  LDEATSALDAESERVVQEALDKI--MINRTTVIVAHRLSTVRNADLIAVIH 471
            LDEATS+LD+ SE+++++ +  I    ++T + +AHR+++++ +D I V +
Sbjct: 1382 LDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFN 1432

Length = 1466

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score =  189 bits (482), Expect = 3e-54
 Identities = 108/403 (26%), Positives = 186/403 (46%), Gaps = 22/403 (5%)

Query: 62  FIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAA 121
            +  +A       + L+ G LL   +    P + L A   +        RG+ A  +  A
Sbjct: 144 AVAAIAVLSVPAALILAAGLLLAGFVA---PLVSLRAARAAEQALA-RLRGELAAQLTDA 199

Query: 122 VAEQTIGSIRTVASFTGEKQAVAKY---NESLTKAYKSGVHEGLAAGLGFGAFTFVAFSS 178
           +          + +      A+A+    +  LT+A +       A  LG       A  +
Sbjct: 200 LDGAA-----ELVASGALPAALAQVEEADRELTRAERRAAA---ATALGAALTLLAAGLA 251

Query: 179 YSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAI 238
              A+W GG  + +       +  ++   +    +              +AAA ++ E +
Sbjct: 252 VLGALWAGGPAVADGRLAPVTLAVLVLLPLAAFEAFAALPAAAQQLTRVRAAAERIVEVL 311

Query: 239 ERKPLIDAYDS---NGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALV 295
           +    +    +     V L      +EL+D+   YP      + +G SL +P G   A++
Sbjct: 312 DAAGPVAEGSAPAAGAVGLGKP--TLELRDLSAGYP--GAPPVLDGVSLDLPPGERVAIL 367

Query: 296 GQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKD 355
           G SGSGKST+++ +    DP  GEV +DGV +       +R ++ + +Q+  LF +++++
Sbjct: 368 GPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRE 427

Query: 356 NINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL 415
           N+   +  A+  E+ AA E    A ++ +LP GLDT++GE G +LSGG++QR+A+ARA+L
Sbjct: 428 NLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALL 487

Query: 416 KDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRL 458
            D  ILLLDE T  LDAE+   + E L   +  RT V++ H L
Sbjct: 488 ADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHHL 530

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score =  188 bits (479), Expect = 2e-53
 Identities = 141/499 (28%), Positives = 236/499 (47%), Gaps = 68/499 (13%)

Query: 12  AARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIG 71
           A  +R  + + L RQ   F+ +   +G+++ R + D   +  + GE V   + L+ + + 
Sbjct: 68  AVELREDFYRQLSRQHPEFYLRH-RTGDLMARATNDVDRVVFAAGEGV---LTLVDSLVM 123

Query: 72  G----FVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVI----TKLASR---GQTAYSIAA 120
           G     V++    W LTL+ L  +P       VM+ +I     +L  R    Q A+S   
Sbjct: 124 GCAVLIVMSTQISWQLTLLALLPMP-------VMAIMIKRYGDQLHERFKLAQAAFSSLN 176

Query: 121 AVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEG-LAAGLGFGAFTFVAFSSY 179
              ++++ SIR + +F  E +  A +        K  +    + A      +  +  ++ 
Sbjct: 177 DRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANL 236

Query: 180 SLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCIS----------AFA---- 225
            LAI  G  M                 V+ GS++LGQ +  +           A A    
Sbjct: 237 -LAIGGGSWM-----------------VVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFN 278

Query: 226 ---AGQAAAYKLFEAIERKPLIDAYDSNGVK-LDDIRGDIELKDIYFSYP--SRPGEQIF 279
               G AA  ++   +   P++     +G + + + RG++++    F+YP    P     
Sbjct: 279 IVERGSAAYSRIRAMLAEAPVVK----DGSEPVPEGRGELDVNIRQFTYPQTDHP---AL 331

Query: 280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339
              + ++  G    + G +GSGKST++SLI+R +D   G++    + L + QL   R ++
Sbjct: 332 ENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRL 391

Query: 340 GLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQ 399
            +VSQ P LF+ ++ +NI  G+  A+  EI   A LA+    I  LPQG DT VGE G  
Sbjct: 392 AVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVM 451

Query: 400 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLS 459
           LSGGQKQRI+IARA+L +  IL+LD+A SA+D  +E  +   L +    RT +I AHRLS
Sbjct: 452 LSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLS 511

Query: 460 TVRNADLIAVIHQGKLVEK 478
            +  A  I V+  G + ++
Sbjct: 512 ALTEASEILVMQHGHIAQR 530

Length = 569

>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score =  184 bits (470), Expect = 5e-52
 Identities = 88/228 (38%), Positives = 138/228 (60%), Gaps = 7/228 (3%)

Query: 255 DDIR----GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIE 310
           +D R    G I++ ++ F+Y  R    +    +LS+PS    ALVG +GSGKST+ SL+ 
Sbjct: 331 NDDRPLQSGRIDIDNVSFAY--RDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLM 388

Query: 311 RFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIM 370
            +Y    GE+ +DG  L       +R  + +V Q+PV+   +   N+  G+D  S  ++ 
Sbjct: 389 GYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRD-ISEEQVW 447

Query: 371 AAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 430
            A E    A+   SLP GL T +GE G  LS GQKQ +A+AR +++ P+IL+LDEAT+ +
Sbjct: 448 QALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANI 507

Query: 431 DAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
           D+ +E+ +Q+AL  +  + T V++AHRLST+  AD I V+H+G+ VE+
Sbjct: 508 DSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQ 555

Length = 592

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score =  165 bits (419), Expect = 4e-48
 Identities = 85/233 (36%), Positives = 120/233 (51%), Gaps = 29/233 (12%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----P 315
           IEL+D+   Y  +         SL IP G   AL+G SG GKST++ L+ R  D     P
Sbjct: 1   IELRDLNVYYGDK---HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57

Query: 316 QAGEVLIDGVNLKE--FQLKWIRGKIGLVSQEPVLFTSSIKDNINYG------KDGASIA 367
             GEVL+DG ++ +    +  +R ++G+V Q+P  F  SI DN+ YG      K    + 
Sbjct: 58  DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117

Query: 368 EIMAAAELANAAKFIDSLPQGLDTMVGE--HGTQLSGGQKQRIAIARAILKDPRILLLDE 425
           E +  A L  A          L   V +  H   LSGGQ+QR+ +ARA+  +P +LLLDE
Sbjct: 118 ERVEEA-LRKA---------ALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDE 167

Query: 426 ATSALDAESERVVQEALDKIMINRTTVIVAHRLSTV-RNADLIAVIHQGKLVE 477
            TSALD  S   ++E + ++    T VIV H +    R AD  A +  G+LVE
Sbjct: 168 PTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVE 220

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score =  156 bits (396), Expect = 5e-45
 Identities = 78/217 (35%), Positives = 116/217 (53%), Gaps = 10/217 (4%)

Query: 262 ELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 321
           ELK++ FSYP        +  SL+I  G    +VG +GSGKST++ L+     P +GEVL
Sbjct: 1   ELKNLSFSYPDGA-RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59

Query: 322 IDGVNLKEFQLKWIRGKIGLVSQEP--VLFTSSIKDNINYGKDGASIAEIMAAAELANAA 379
           +DG +L +  LK +R K+GLV Q P    F  ++++ + +G +   + E      +  A 
Sbjct: 60  VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119

Query: 380 KFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQ 439
           + +     GL+ +       LSGGQKQR+AIA  +  DP ILLLDE T+ LD    R + 
Sbjct: 120 ELV-----GLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELL 174

Query: 440 EALDKIMINRTTVIVA-HRLSTVRN-ADLIAVIHQGK 474
           E L K+     T+I+  H L  +   AD + V+  GK
Sbjct: 175 ELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score =  151 bits (384), Expect = 1e-43
 Identities = 61/217 (28%), Positives = 113/217 (52%), Gaps = 41/217 (18%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           + + ++ FSYP +  +Q+    SL +  G   AL+G+SGSGKST++ L+     PQ GE+
Sbjct: 1   LSINNVSFSYPEQE-QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAK 380
            +DGV + + + K +   I +++Q P LF +++++N+                       
Sbjct: 60  TLDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL----------------------- 95

Query: 381 FIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQE 440
                           G + SGG++QR+A+AR +L+D  I+LLDE T  LD  +ER +  
Sbjct: 96  ----------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS 139

Query: 441 ALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
            + +++ ++T + + H L+ + + D I  +  GK++ 
Sbjct: 140 LIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIM 176

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score =  150 bits (380), Expect = 3e-43
 Identities = 66/216 (30%), Positives = 106/216 (49%), Gaps = 44/216 (20%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           +E++++ F YP      +    S SI  G + A++G SGSGKST+  LI     P +G V
Sbjct: 1   LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAK 380
            +DG ++ ++    +   +G + Q+  LF+ SI +NI                       
Sbjct: 60  RLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI----------------------- 96

Query: 381 FIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQE 440
                              LSGGQ+QR+ +ARA+  +PRIL+LDE  S LD E ER + +
Sbjct: 97  -------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQ 137

Query: 441 ALDKI-MINRTTVIVAHRLSTVRNADLIAVIHQGKL 475
           A+  +     T +++AHR  T+ +AD I V+  G++
Sbjct: 138 AIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score =  151 bits (383), Expect = 9e-43
 Identities = 81/234 (34%), Positives = 125/234 (53%), Gaps = 29/234 (12%)

Query: 261 IELKDIYFSYPSRPGE-QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 319
           IELK++   +    G+       SLS+P G    ++G+SG+GKST+I  I     P +G 
Sbjct: 2   IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61

Query: 320 VLIDGVN---LKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINY-----GKDGASIAE-I 369
           VL+DG +   L   +L+  R +IG++ Q   L +S ++ +N+       G   A I E +
Sbjct: 62  VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERV 121

Query: 370 MAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 429
           +   EL       D+ P            QLSGGQKQR+ IARA+  +P++LL DEATSA
Sbjct: 122 LELLELVGLEDKADAYP-----------AQLSGGQKQRVGIARALANNPKVLLCDEATSA 170

Query: 430 LDAESERVVQEALDKIMINR----TTVIVAHRLSTVRN-ADLIAVIHQGKLVEK 478
           LD E+ + +   L    INR    T V++ H +  V+   D +AV+ +G++VE+
Sbjct: 171 LDPETTQSILALLRD--INRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEE 222

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score =  149 bits (380), Expect = 2e-42
 Identities = 73/239 (30%), Positives = 120/239 (50%), Gaps = 34/239 (14%)

Query: 261 IELKDIYFSYPSRPGE-QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 319
           +E+K++  S+P+  G  +  +  S SI  G T  LVG+SGSGKST+   I     P +G 
Sbjct: 2   LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61

Query: 320 VLIDG---VNLKEFQLKWIRGKIGLVSQEPVLFTS-----SIKDNI---------NYGKD 362
           ++ DG   + L     K  R +I +V Q+P   +S     +I + I            K+
Sbjct: 62  IIFDGKDLLKLSRRLRKIRRKEIQMVFQDP--MSSLNPRMTIGEQIAEPLRIHGKLSKKE 119

Query: 363 GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILL 422
               A ++    +    + ++  P            +LSGGQ+QR+AIARA+  +P++L+
Sbjct: 120 ARKEAVLLLLVGVGLPEEVLNRYPH-----------ELSGGQRQRVAIARALALNPKLLI 168

Query: 423 LDEATSALDAESERVVQEALDKI--MINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVEK 478
            DE TSALD   +  + + L K+   +  T + + H L  V   AD +AV++ GK+VE+
Sbjct: 169 ADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEE 227

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  153 bits (388), Expect = 2e-42
 Identities = 85/234 (36%), Positives = 128/234 (54%), Gaps = 30/234 (12%)

Query: 261 IELKDIYFSYPSRPGEQI--FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG 318
           IEL+++  ++       +   +  SL IP G    ++G SG+GKST++ LI     P +G
Sbjct: 2   IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61

Query: 319 EVLIDGVN---LKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINY-----GKDGASIAEI 369
            V +DG +   L E +L+ +R KIG++ Q   L +S ++ +N+ +     G   A I + 
Sbjct: 62  SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQR 121

Query: 370 MA-AAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 428
           +A   EL   +   D  P            QLSGGQKQR+AIARA+  +P+ILL DEATS
Sbjct: 122 VAELLELVGLSDKADRYP-----------AQLSGGQKQRVAIARALANNPKILLCDEATS 170

Query: 429 ALDAESERVVQEALDKIMINR----TTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477
           ALD E+ + + E L    INR    T V++ H +  V+   D +AV+ QG+LVE
Sbjct: 171 ALDPETTQSILELLKD--INRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVE 222

Length = 339

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score =  156 bits (396), Expect = 7e-42
 Identities = 82/237 (34%), Positives = 133/237 (56%), Gaps = 6/237 (2%)

Query: 243 LIDAYDSN--GVKLDDIRGDIELKDIYFSYPSRPGEQ-IFNGFSLSIPSGTTAALVGQSG 299
           L+  Y S    + L +  G + ++++    P   G++    G S S+ +G   A++G SG
Sbjct: 297 LLANYPSRDPAMPLPEPEGHLSVENVTIVPP--GGKKPTLRGISFSLQAGEALAIIGPSG 354

Query: 300 SGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINY 359
           SGKST+  LI   + P +G V +DG +LK++  +     IG + Q+  LF  ++ +NI  
Sbjct: 355 SGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIAR 414

Query: 360 GKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR 419
             + A   +I+ AA+LA   + I  LP G DT++G  G  LSGGQ+QRIA+ARA+  DP+
Sbjct: 415 FGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPK 474

Query: 420 ILLLDEATSALDAESERVVQEALDKIMINR-TTVIVAHRLSTVRNADLIAVIHQGKL 475
           +++LDE  S LD E E+ +  A+  +     T V++ HR S +   D I V+  G++
Sbjct: 475 LVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRI 531

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score =  155 bits (393), Expect = 3e-41
 Identities = 86/258 (33%), Positives = 139/258 (53%), Gaps = 16/258 (6%)

Query: 224 FAAGQAAAYKLFEAIERKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQ-IFNGF 282
           F A + +  +L E +   P         + L   +G + ++ +  + P    ++ I  G 
Sbjct: 302 FVAARQSYKRLNELLAELPAAAE----RMPLPAPQGALSVERLTAAPP--GQKKPILKGI 355

Query: 283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIR---GK- 338
           S ++ +G    ++G SGSGKST+  L+   + P +G V +DG +L++    W R   G+ 
Sbjct: 356 SFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQ----WDREQLGRH 411

Query: 339 IGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGT 398
           IG + Q+  LF  +I +NI    + A   +++ AA LA   + I  LPQG DT +GE G 
Sbjct: 412 IGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGA 471

Query: 399 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMIN-RTTVIVAHR 457
            LSGGQ+QRIA+ARA+  DP +++LDE  S LD+E E  +  A+        T V++AHR
Sbjct: 472 TLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHR 531

Query: 458 LSTVRNADLIAVIHQGKL 475
            S + + D I V+  G++
Sbjct: 532 PSALASVDKILVLQDGRI 549

Length = 580

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score =  146 bits (371), Expect = 5e-41
 Identities = 78/234 (33%), Positives = 120/234 (51%), Gaps = 34/234 (14%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           IEL+ +  S+  R    +  G  L +  G   A++G SGSGKST++ LI     P +GEV
Sbjct: 1   IELRGLTKSFGGR---TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57

Query: 321 LIDGVN---LKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNI------NYGKDGASIAEI- 369
           LIDG +   L E +L  +R ++G++ Q   LF S ++ +N+      +       I EI 
Sbjct: 58  LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV 117

Query: 370 ---MAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 426
              + A  L  A    D  P            +LSGG K+R+A+ARA+  DP +LL DE 
Sbjct: 118 LEKLEAVGLRGAE---DLYP-----------AELSGGMKKRVALARALALDPELLLYDEP 163

Query: 427 TSALDAESERVVQEALDKI--MINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477
           T+ LD  +  V+ + +  +   +  T+++V H L T    AD IAV++ GK+V 
Sbjct: 164 TAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVA 217

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score =  143 bits (362), Expect = 2e-40
 Identities = 75/220 (34%), Positives = 109/220 (49%), Gaps = 48/220 (21%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           +ELK++   Y     + + N  SL+I +G   AL+G SGSGKST++  I    +P +G +
Sbjct: 1   LELKNVSKRYG---QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57

Query: 321 LIDGVNL--KEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELAN 377
           LIDG +L   E +L  +R +IG+V Q+  LF   ++ +NI  G                 
Sbjct: 58  LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----------------- 100

Query: 378 AAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERV 437
                                 LSGGQ+QR+A+ARA+  DP +LLLDE TSALD  + R 
Sbjct: 101 ----------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRRE 138

Query: 438 VQEALDKI--MINRTTVIVAHRLSTVRN-ADLIAVIHQGK 474
           V+  L  +   +  T V+V H L      AD + V+  GK
Sbjct: 139 VRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C

 Score =  144 bits (364), Expect = 2e-40
 Identities = 69/221 (31%), Positives = 126/221 (57%), Gaps = 24/221 (10%)

Query: 259 GDIELKDIYFSY-PSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA 317
           G+IE++++   Y P  P   +    S  + +G    +VG++G+GKST+I  + RF + + 
Sbjct: 5   GEIEVENLSVRYAPDLP--PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62

Query: 318 GEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNIN-YGKDGASIAEIMAAAELA 376
           G++ IDG+++    L+ +R  + ++ Q+P LF+ +I+ N++ + +   S  EI  A    
Sbjct: 63  GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDE--YSDEEIYGALR-- 118

Query: 377 NAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESER 436
                           V E G  LS GQ+Q + +ARA+LK PR+L+LDEAT+++D  ++ 
Sbjct: 119 ----------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDA 162

Query: 437 VVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
           ++Q+ + +   N T + +AHRL T+ + D I V+  G++ E
Sbjct: 163 LIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKE 203

Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score =  143 bits (364), Expect = 2e-40
 Identities = 74/227 (32%), Positives = 120/227 (52%), Gaps = 26/227 (11%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           +ELK +  +Y S    +  +  SL++  G   AL+G SG GK+T++ LI     P +GE+
Sbjct: 1   LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYG------KDGASIAEIMAAA 373
           LIDG ++    +   R  IG+V Q+  LF   ++ +NI +G            A +    
Sbjct: 58  LIDGRDV--TGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELL 115

Query: 374 ELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 433
           EL      ++  P            +LSGGQ+QR+A+ARA+ ++P +LLLDE  SALDA+
Sbjct: 116 ELVGLEGLLNRYP-----------HELSGGQQQRVALARALAREPSLLLLDEPLSALDAK 164

Query: 434 SERVVQEALDKIMINR--TTVIVAHRLS-TVRNADLIAVIHQGKLVE 477
               ++E L ++      TT+ V H     +  AD IAV+++G++V+
Sbjct: 165 LREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQ 211

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region

 Score =  142 bits (361), Expect = 3e-39
 Identities = 75/211 (35%), Positives = 123/211 (58%), Gaps = 3/211 (1%)

Query: 7   TGERQAARIRGLYLKTLLRQDIGFFDK---ETHSGEIIERMSGDTVLIQDSIGEKVGKFI 63
            GER   RIR    + LLRQ +G           GE+  R++ D   I+D +G+K+G F 
Sbjct: 64  LGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLGLFF 123

Query: 64  QLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVA 123
           Q LAT +GGF++    GW LTLV+L+ +P ++L + V++  + KL  + Q AY+ A +VA
Sbjct: 124 QSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAGSVA 183

Query: 124 EQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYSLAI 183
           E+++  IRTV +F  E+  + +Y+++L  A K+G+ + + AGL FG    +++ SY+LA+
Sbjct: 184 EESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLSYALAL 243

Query: 184 WFGGKMILEKGYKGGDVINVIFCVMIGSMSL 214
           WFG  +++  G   G V   +   +  S  L
Sbjct: 244 WFGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274

This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score =  139 bits (354), Expect = 6e-39
 Identities = 74/223 (33%), Positives = 114/223 (51%), Gaps = 28/223 (12%)

Query: 261 IELKDIYFSYPSRPGEQ--IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG 318
           I ++D  F++ S   E        +L +P G   A+VG  GSGKS+++S +    +  +G
Sbjct: 1   ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60

Query: 319 EVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGK--DGASIAEIMAAAELA 376
            V              + G I  VSQEP +   +I++NI +GK  D     +++ A  L 
Sbjct: 61  SV-------------SVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALE 107

Query: 377 NAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES-- 434
                ++ LP G  T +GE G  LSGGQKQRI++ARA+  D  I LLD+  SA+DA    
Sbjct: 108 ---PDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGR 164

Query: 435 ---ERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGK 474
              E  +   L   + N+T ++V H+L  + +AD I V+  G+
Sbjct: 165 HIFENCILGLL---LNNKTRILVTHQLQLLPHADQIVVLDNGR 204

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score =  138 bits (351), Expect = 2e-38
 Identities = 70/221 (31%), Positives = 104/221 (47%), Gaps = 27/221 (12%)

Query: 261 IELKDIYFSYPSRPGE-QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 319
           +E++++  +Y    G        SLS+  G   ALVG SG GKST++ +I     P +GE
Sbjct: 1   LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60

Query: 320 VLIDGVNLKEFQLKWIRGKIGLVSQEPVLFT-SSIKDNINYG------KDGASIAEIMAA 372
           VL+DG  +            G V Q+  L    ++ DN+  G          +       
Sbjct: 61  VLVDGEPVTG-----PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEEL 115

Query: 373 AELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 432
            EL   + F ++ P            QLSGG +QR+A+ARA+  DP +LLLDE  SALDA
Sbjct: 116 LELVGLSGFENAYPH-----------QLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164

Query: 433 ESERVVQEALDKIM--INRTTVIVAHRLS-TVRNADLIAVI 470
            +   +QE L  I     +T ++V H +   V  AD + V+
Sbjct: 165 LTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVL 205

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score =  138 bits (351), Expect = 3e-38
 Identities = 76/227 (33%), Positives = 127/227 (55%), Gaps = 14/227 (6%)

Query: 261 IELKDIYFSYPSRPGE-QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 319
           IELK++   Y     + +     +L I +G   A+VG SGSGKST+++L+     P +GE
Sbjct: 2   IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61

Query: 320 VLIDGVN---LKEFQLKWIRGK-IGLVSQE-PVLFTSSIKDNINYGKDGASIAEIMAAAE 374
           VLI+G +   L E +L  +R K IG V Q   +L   ++ +N+   +    IA   A   
Sbjct: 62  VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENV---ELPLLIAGKSAGRR 118

Query: 375 LANAAKFIDSLPQGL-DTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 433
              A + ++ L  GL D ++ +  ++LSGGQ+QR+AIARA++ +P+I+L DE T  LD++
Sbjct: 119 KRAAEELLEVL--GLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSK 176

Query: 434 SERVVQEALDKI--MINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
           + + V E L ++     +T ++V H     + AD +  +  GK+ E+
Sbjct: 177 TAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEEE 223

Length = 226

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  139 bits (352), Expect = 4e-38
 Identities = 80/236 (33%), Positives = 117/236 (49%), Gaps = 20/236 (8%)

Query: 254 LDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFY 313
                  IE++D+   Y     +      +L IP     AL+G SG GKST++  + R  
Sbjct: 1   ETMKIPAIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMN 57

Query: 314 DP-----QAGEVLIDGVNL--KEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG--KDGA 364
           D        GEVL+DG N+   +  +  +R ++G+V Q+P  F  SI DN+ YG    G 
Sbjct: 58  DLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGI 117

Query: 365 SIAEIMAAAE--LANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILL 422
              E+    E  L  AA + D +   L     +    LSGGQ+QR+ IARA+   P +LL
Sbjct: 118 KDKELDEIVESSLKKAALW-DEVKDRLH----KSALGLSGGQQQRLCIARALAVKPEVLL 172

Query: 423 LDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTV-RNADLIAVIHQGKLVE 477
           +DE TSALD  S   ++E + ++    T VIV H +    R +D  A  + G+LVE
Sbjct: 173 MDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVE 228

Length = 253

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  138 bits (350), Expect = 5e-38
 Identities = 79/226 (34%), Positives = 120/226 (53%), Gaps = 24/226 (10%)

Query: 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 319
           +IE K++ +S     G++I    S+    G    +VG SG+GKST+I LI R  DP  G 
Sbjct: 3   EIEFKEVSYS---SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGS 59

Query: 320 VLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINY-----GKDGASIAEIMAAAE 374
           +LIDGV++K   +  +R KIG+V Q+P LF  ++KDNI Y     G+    +   ++   
Sbjct: 60  ILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVG 119

Query: 375 LANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 434
           L       D                LSGG+ QR++IAR +  +P +LLLDE TSALD  S
Sbjct: 120 LNKEYATRDV-------------KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTS 166

Query: 435 ERVVQEALDKIM--INRTTVIVAHRLSTV-RNADLIAVIHQGKLVE 477
             +++E + K+   +N T + + H +    R  D  A +++G LVE
Sbjct: 167 TEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVE 212

Length = 241

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score =  134 bits (341), Expect = 2e-37
 Identities = 56/218 (25%), Positives = 107/218 (49%), Gaps = 48/218 (22%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           IE++++   Y  +      +  SL++  G    L+G +G+GK+T+I +I     P +GE+
Sbjct: 1   IEVRNLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAA 379
            + G ++K+   + ++ +IG + +EP L+ + ++++N+                      
Sbjct: 58  KVLGKDIKKEPEE-VKRRIGYLPEEPSLYENLTVRENLKL-------------------- 96

Query: 380 KFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQ 439
                                SGG KQR+A+A+A+L DP +L+LDE TS LD ES R   
Sbjct: 97  ---------------------SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFW 135

Query: 440 EALDKIMINRTTVIVA-HRLSTVRN-ADLIAVIHQGKL 475
           E L ++     T++++ H L       D +A+++ G++
Sbjct: 136 ELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  137 bits (346), Expect = 2e-37
 Identities = 78/230 (33%), Positives = 113/230 (49%), Gaps = 29/230 (12%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           IE +++ F YP    +      SL I  G    L+G +GSGKST++ L+     P +GEV
Sbjct: 4   IEAENLSFRYP--GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61

Query: 321 LIDGVNLKEFQLKW-IRGKIGLVSQEPV--LFTSSIKDNINYGKD--GASIAEIMAAAEL 375
           L+DG++    +    +R K+GLV Q P   LF  +++D + +G +  G    EI      
Sbjct: 62  LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAE 121

Query: 376 ANAAKFIDSLPQGLDTMVGEHGTQ------LSGGQKQRIAIARAILKDPRILLLDEATSA 429
           A               +VG           LSGGQKQR+AIA  +   P ILLLDE T+ 
Sbjct: 122 AL-------------ELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAG 168

Query: 430 LDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLV 476
           LD +  R + E L K+     +T +IV H L  V   AD + V+  GK++
Sbjct: 169 LDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKIL 218

Length = 235

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score =  136 bits (344), Expect = 3e-37
 Identities = 78/234 (33%), Positives = 122/234 (52%), Gaps = 37/234 (15%)

Query: 261 IELKDIYFSYPSRPGE-QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 319
           IE+K++  S+    G+ ++  G SLS+  G    ++G SGSGKST++  +    +P +G 
Sbjct: 3   IEIKNLSKSF----GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGS 58

Query: 320 VLIDGVN-LKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYG-----KDGASIAEIMAA 372
           + +DG +   +  +  +R K+G+V Q+  LF   ++ +N+        K   + A   A 
Sbjct: 59  ITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKAL 118

Query: 373 AELAN---AAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 429
             L     A K  D+ P            QLSGGQ+QR+AIARA+  DP+++L DE TSA
Sbjct: 119 ELLEKVGLADKA-DAYPA-----------QLSGGQQQRVAIARALAMDPKVMLFDEPTSA 166

Query: 430 LDAESERVVQEALDKIMIN-----RTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477
           LD E    V E LD +M +      T +IV H +   R  AD +  + QGK++E
Sbjct: 167 LDPEL---VGEVLD-VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIE 216

Length = 240

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score =  135 bits (343), Expect = 9e-37
 Identities = 70/230 (30%), Positives = 112/230 (48%), Gaps = 28/230 (12%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           +E++++ F Y  +P   I +  S SIP G    ++G +GSGKST++  +     P++GEV
Sbjct: 3   LEVENLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVL-FTSSIKDNINYGK----------DGASIAEI 369
           L+DG ++     K +  K+  V Q P   F  ++ + +  G+                 +
Sbjct: 60  LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119

Query: 370 MAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 429
             A EL       D   + +D         LSGG++QR+ IARA+ ++  ILLLDE TS 
Sbjct: 120 EEALELLGLEHLAD---RPVDE--------LSGGERQRVLIARALAQETPILLLDEPTSH 168

Query: 430 LDAESERVVQEALDKIMI--NRTTVIVAHRLS-TVRNADLIAVIHQGKLV 476
           LD   +  V E L  +      T V+V H L+   R AD + ++  GK+V
Sbjct: 169 LDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIV 218

Length = 258

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score =  135 bits (341), Expect = 4e-36
 Identities = 66/230 (28%), Positives = 115/230 (50%), Gaps = 30/230 (13%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           IE++++   Y     +   +G S  +  G    L+G +G+GK+T++ ++     P +GE+
Sbjct: 5   IEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNIN-----YGKDGAS----IAEIM 370
           L+ G ++ +   K +R +IG V QEP L+   ++++N+      YG         I E++
Sbjct: 63  LVLGYDVVKEPAK-VRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELL 121

Query: 371 AAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 430
               L + A          +  V      LSGG KQR++IA A+L DP +L+LDE TS L
Sbjct: 122 ELFGLEDKA----------NKKVR----TLSGGMKQRLSIALALLHDPELLILDEPTSGL 167

Query: 431 DAESERVVQEALDKI--MINRTTVIVAHRLSTV-RNADLIAVIHQGKLVE 477
           D ES R + E L ++      T ++  H L       D + +++ GK++ 
Sbjct: 168 DPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIA 217

Length = 293

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  133 bits (338), Expect = 5e-36
 Identities = 77/235 (32%), Positives = 125/235 (53%), Gaps = 37/235 (15%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           IE++ +  S+  R    I +G  L +P G   A++G SGSGKST++ LI     P  GE+
Sbjct: 9   IEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65

Query: 321 LIDGVN---LKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNI-----NYGKDGASIAEIMA 371
           LIDG +   L E +L  IR ++G++ Q+  LF+S ++ +N+      + K   S+   + 
Sbjct: 66  LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV 125

Query: 372 AAELANAAKFIDSLPQGLDTMVGEHG-------TQLSGGQKQRIAIARAILKDPRILLLD 424
             +L                +VG  G       ++LSGG ++R+A+ARAI  DP +L LD
Sbjct: 126 LMKLE---------------LVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLD 170

Query: 425 EATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLV 476
           E TS LD  S  V+ E + ++   +  T ++V H L ++   AD +AV+  GK++
Sbjct: 171 EPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVI 225

Length = 263

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score =  135 bits (343), Expect = 6e-36
 Identities = 70/229 (30%), Positives = 117/229 (51%), Gaps = 31/229 (13%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           +E++++  S+         +  SL I  G    L+G SG GK+T++ +I  F  P +GE+
Sbjct: 6   LEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI 62

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLF-TSSIKDNINYG------KDGASIAE-IMAA 372
           L+DG ++    +   +  IG+V Q   LF   ++++N+ +G         A I   +  A
Sbjct: 63  LLDGEDI--TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEA 120

Query: 373 AELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 432
            EL     F D  P            QLSGGQ+QR+A+ARA++ +P++LLLDE  SALDA
Sbjct: 121 LELVGLEGFADRKP-----------HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDA 169

Query: 433 ESERVVQEALDKIMINR--TTVIVAHRLS---TVRNADLIAVIHQGKLV 476
           +    +++ L ++      T V V H       +  +D IAV++ G++ 
Sbjct: 170 KLREQMRKELKELQRELGITFVYVTHDQEEALAM--SDRIAVMNDGRIE 216

Length = 352

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score =  134 bits (339), Expect = 9e-36
 Identities = 74/231 (32%), Positives = 123/231 (53%), Gaps = 30/231 (12%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           IE +++   Y ++      +  +L+I  G    L+G SGSGK+T + +I R  +P +GE+
Sbjct: 2   IEFENVSKRYGNKK---AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINY-----GKDGASIAEIMAAAE 374
           LIDG ++ +     +R KIG V Q+  LF   ++ +NI       G D   I +   A E
Sbjct: 59  LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKR--ADE 116

Query: 375 LA-----NAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 429
           L      + +++ D  P            +LSGGQ+QR+ +ARA+  DP ILL+DE   A
Sbjct: 117 LLDLVGLDPSEYADRYPH-----------ELSGGQQQRVGVARALAADPPILLMDEPFGA 165

Query: 430 LDAESERVVQEALDKIM--INRTTVIVAHRLS-TVRNADLIAVIHQGKLVE 477
           LD  + + +QE + ++   + +T V V H +   ++ AD IAV+  G++V+
Sbjct: 166 LDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQ 216

Length = 309

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score =  131 bits (331), Expect = 2e-35
 Identities = 80/231 (34%), Positives = 112/231 (48%), Gaps = 29/231 (12%)

Query: 261 IELKDIYFSYPSRPGE-QIFNGFSLSIPSGTTAALVGQSGSGKST---VISLIERFYDPQ 316
           IELK++  +Y     + Q   G SLSI  G   A+VG SGSGKST   ++  ++R   P 
Sbjct: 1   IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PT 57

Query: 317 AGEVLIDGVN---LKEFQLKWIRGK-IGLVSQEPVLFTS-SIKDNINY-----GKDGASI 366
           +GEV +DG +   L E +L   R + IG V Q   L    +  +N+       G      
Sbjct: 58  SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER 117

Query: 367 AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 426
            E   A EL         L   L+        +LSGGQ+QR+AIARA+  DP+I+L DE 
Sbjct: 118 RER--AEELLERVG----LGDRLNHYPS----ELSGGQQQRVAIARALANDPKIILADEP 167

Query: 427 TSALDAESERVVQEALDKI--MINRTTVIVAHRLSTVRNADLIAVIHQGKL 475
           T  LD+E+ + V E L ++      T V+V H       AD I  +  GK+
Sbjct: 168 TGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score =  138 bits (349), Expect = 2e-35
 Identities = 74/245 (30%), Positives = 128/245 (52%), Gaps = 43/245 (17%)

Query: 261 IELKDIYFSYPSRPGEQI--------FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERF 312
           + ++++   Y SR G  +         +  S  +  G T  LVG+SGSGKST+  ++   
Sbjct: 281 LSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGL 340

Query: 313 YDPQAGEVLIDG--VNLKEFQLKWIRGKIGLVSQEPVLFTS-----SIKDNI------NY 359
             P +G ++ DG  ++L   +L+ +R +I +V Q+P  ++S     ++ D +      + 
Sbjct: 341 LPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDP--YSSLNPRMTVGDILAEPLRIHG 398

Query: 360 GKDGAS----IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL 415
           G  GA     +AE++    L    +F+D  P            +LSGGQ+QR+AIARA+ 
Sbjct: 399 GGSGAERRARVAELLELVGLP--PEFLDRYP-----------HELSGGQRQRVAIARALA 445

Query: 416 KDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQ 472
            +P++L+LDE  SALD   +  V   L  +   +  T + ++H L+ VR  AD +AV++ 
Sbjct: 446 LEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYD 505

Query: 473 GKLVE 477
           G++VE
Sbjct: 506 GRIVE 510

Length = 539

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score =  131 bits (332), Expect = 2e-35
 Identities = 82/232 (35%), Positives = 122/232 (52%), Gaps = 25/232 (10%)

Query: 261 IELKDIYFSYPSRPGE-QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD----- 314
           IE++++   Y    GE +     +L IP     AL+G SG GKST++  + R  D     
Sbjct: 2   IEIENLNLFY----GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGV 57

Query: 315 PQAGEVLIDGVNL--KEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG------KDGASI 366
              G+VL DG ++  K+  +  +R ++G+V Q+P  F  SI DNI YG      KD   +
Sbjct: 58  RIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKEL 117

Query: 367 AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 426
            EI+  + L  AA + D +   L          LSGGQ+QR+ IARA+  +P +LLLDE 
Sbjct: 118 DEIVEES-LKKAALW-DEVKDRLHD----SALGLSGGQQQRLCIARALAVEPEVLLLDEP 171

Query: 427 TSALDAESERVVQEALDKIMINRTTVIVAHRLS-TVRNADLIAVIHQGKLVE 477
           TSALD  +   ++E + ++    T VIV H +    R +D  A  + G+LVE
Sbjct: 172 TSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVE 223

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  131 bits (331), Expect = 4e-35
 Identities = 64/205 (31%), Positives = 96/205 (46%), Gaps = 28/205 (13%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           +E++ +  S+       +    +LS+  G   A++G SG GKST++ LI     P +GEV
Sbjct: 4   LEIEGVSKSFGGVE---VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFT-SSIKDNINYG------KDGASIAEIMAAA 373
           L+DG  +           IG V QE  L    ++ DN+  G          +        
Sbjct: 61  LLDGRPVTG-----PGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELL 115

Query: 374 ELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 433
           EL   A F D  P            QLSGG +QR+AIARA+   P++LLLDE   ALDA 
Sbjct: 116 ELVGLAGFEDKYPH-----------QLSGGMRQRVAIARALATRPKLLLLDEPFGALDAL 164

Query: 434 SERVVQEALDKIM--INRTTVIVAH 456
           +   +Q+ L ++     +T ++V H
Sbjct: 165 TREELQDELLRLWEETRKTVLLVTH 189

Length = 248

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score =  130 bits (329), Expect = 6e-35
 Identities = 75/230 (32%), Positives = 120/230 (52%), Gaps = 27/230 (11%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           IE +++   Y    G++  N  +L I  G    L+G SGSGK+T + +I R  +P +GE+
Sbjct: 1   IEFENVTKRYGG--GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINY---------GKDGASIAEIM 370
            IDG +++E     +R KIG V Q+  LF   ++++NI            K      E++
Sbjct: 59  FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELL 118

Query: 371 AAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 430
           A   L + A+F D  P            +LSGGQ+QR+ +ARA+  DP +LL+DE   AL
Sbjct: 119 ALVGL-DPAEFADRYPH-----------ELSGGQQQRVGVARALAADPPLLLMDEPFGAL 166

Query: 431 DAESERVVQEALDKI--MINRTTVIVAHRL-STVRNADLIAVIHQGKLVE 477
           D  +   +QE   ++   + +T V V H +    R AD IA++  G++V+
Sbjct: 167 DPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQ 216

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score =  138 bits (348), Expect = 1e-34
 Identities = 73/222 (32%), Positives = 134/222 (60%), Gaps = 6/222 (2%)

Query: 258  RGDIELKDIYFSYPSRPG-EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ 316
            RG +E ++    Y  R   + +    +++I  G    +VG++G+GKS++   + R  +  
Sbjct: 1282 RGRVEFRNYCLRY--REDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA 1339

Query: 317  AGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNIN-YGKDGASIAEIMAAAEL 375
             GE++IDG+N+ +  L  +R KI ++ Q+PVLF+ S++ N++ + +   S  E+  A EL
Sbjct: 1340 EGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQ--YSDEEVWWALEL 1397

Query: 376  ANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 435
            A+   F+ +LP  LD    E G  LS GQ+Q + +ARA+L+  +IL+LDEAT+A+D E++
Sbjct: 1398 AHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETD 1457

Query: 436  RVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
             ++Q  +     + T + +AHRL+T+ +   + V+ +G++ E
Sbjct: 1458 NLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAE 1499

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score =  127 bits (321), Expect = 1e-34
 Identities = 63/221 (28%), Positives = 103/221 (46%), Gaps = 50/221 (22%)

Query: 262 ELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 321
           E++++   Y  R    + +  SLSI +G    ++G +G+GKST++  +     P +GE+L
Sbjct: 1   EVENLSVGYGGRT---VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57

Query: 322 IDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKF 381
           +DG +L     K +  KI  V Q                           A EL   A  
Sbjct: 58  LDGKDLASLSPKELARKIAYVPQ---------------------------ALELLGLAHL 90

Query: 382 IDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES-----ER 436
            D   +  +         LSGG++QR+ +ARA+ ++P ILLLDE TS LD        E 
Sbjct: 91  AD---RPFNE--------LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLEL 139

Query: 437 VVQEALDKIMINRTTVIVAHRLS-TVRNADLIAVIHQGKLV 476
           + + A ++    +T V+V H L+   R AD + ++  G++V
Sbjct: 140 LRRLARER---GKTVVMVLHDLNLAARYADRVILLKDGRIV 177

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score =  131 bits (332), Expect = 2e-34
 Identities = 68/229 (29%), Positives = 117/229 (51%), Gaps = 30/229 (13%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           +ELK++  S+ S     +    +L I  G    L+G SG GKST++ +I    +P +GE+
Sbjct: 4   LELKNVRKSFGSFE---VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLF-TSSIKDNI-----NYGKDGASI-AEIMAAA 373
           LIDG ++ +   +  +  I +V Q   L+   ++ +NI       G   A I   +   A
Sbjct: 61  LIDGRDVTDLPPE--KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVA 118

Query: 374 ELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 433
           +L      ++  P            QLSGGQ+QR+A+ARA+++ P++ LLDE  S LDA+
Sbjct: 119 KLLGLEHLLNRKP-----------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167

Query: 434 SERVVQEALDKI--MINRTTVIVAHRL---STVRNADLIAVIHQGKLVE 477
              +++  + K+   +  TT+ V H      T+  AD I V++ G++ +
Sbjct: 168 LRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTL--ADRIVVMNDGRIQQ 214

Length = 338

>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional

 Score =  131 bits (332), Expect = 2e-34
 Identities = 89/235 (37%), Positives = 125/235 (53%), Gaps = 31/235 (13%)

Query: 261 IELKDIYFSYPSRPGE-QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 319
           IELK+I   +P         N  SL IP+G    ++G SG+GKST+I  I     P +G 
Sbjct: 2   IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61

Query: 320 VLIDGVN---LKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAEL 375
           VL+DG +   L E +L+  R +IG++ Q   L +S ++ DN+                EL
Sbjct: 62  VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVAL------------PLEL 109

Query: 376 ANAAK-FIDSLPQGLDTMVG--EHG----TQLSGGQKQRIAIARAILKDPRILLLDEATS 428
           A   K  I +    L  +VG  +       QLSGGQKQR+AIARA+  +P++LL DEATS
Sbjct: 110 AGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATS 169

Query: 429 ALDAESERVVQEALDKIMINR----TTVIVAHRLSTVRN-ADLIAVIHQGKLVEK 478
           ALD  + R + E L    INR    T V++ H +  V+   D +AVI  G+LVE+
Sbjct: 170 ALDPATTRSILELLKD--INRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQ 222

Length = 343

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score =  127 bits (322), Expect = 6e-34
 Identities = 74/233 (31%), Positives = 119/233 (51%), Gaps = 30/233 (12%)

Query: 261 IELKDIYFSYPSRPGE-QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 319
           + ++++   Y          N  SL I  G T  +VG+SGSGKST+  L+     P +G 
Sbjct: 4   LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63

Query: 320 VLIDGVNLKEFQ-LKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANA 378
           +L+DG  L   +  K     + +V Q+P    SS+      G+    ++E +    L+ +
Sbjct: 64  ILLDGKPLAPKKRAKAFYRPVQMVFQDP---YSSLNPRRTVGR---ILSEPLRPHGLSKS 117

Query: 379 AKFIDSLPQGLDTMVGEHGT-------QLSGGQKQRIAIARAILKDPRILLLDEATSALD 431
            + I  L   LD  VG   +       +LSGGQ+QRIAIARA++ +P++L+LDE TSALD
Sbjct: 118 QQRIAEL---LD-QVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALD 173

Query: 432 AESERVVQEALDKIMI------NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477
                 VQ  +  +++        T + ++H L+ V +  D IAV+  G++VE
Sbjct: 174 V----SVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVE 222

Length = 252

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score =  135 bits (341), Expect = 1e-33
 Identities = 74/223 (33%), Positives = 133/223 (59%), Gaps = 10/223 (4%)

Query: 259  GDIELKDIYFSY-PSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA 317
            G I+ +D+   Y P  P   + +G S  I       +VG++G+GKS++++ + R  + + 
Sbjct: 1236 GSIKFEDVVLRYRPELP--PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER 1293

Query: 318  GEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNI---NYGKDGASIAEIMAAAE 374
            G +LIDG ++ +F L  +R  +G++ Q PVLF+ +++ N+   N   D    A++  + E
Sbjct: 1294 GRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHND----ADLWESLE 1349

Query: 375  LANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 434
             A+    I     GLD  V E G   S GQ+Q +++ARA+L+  +IL+LDEAT+A+D  +
Sbjct: 1350 RAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRT 1409

Query: 435  ERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
            + ++Q+ + +   + T +I+AHRL+T+ + D I V+  G++VE
Sbjct: 1410 DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVE 1452

Length = 1622

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  126 bits (319), Expect = 2e-33
 Identities = 70/226 (30%), Positives = 119/226 (52%), Gaps = 22/226 (9%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           I+++++ FSYP+          S  I  G   A++G +GSGKST+  ++     PQ+GE+
Sbjct: 8   IKVENVSFSYPNSE-NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEP--VLFTSSIKDNINYGKDGASI------AEIMAA 372
            IDG+ + +  LK IR KIG++ Q P      ++++D+I +G +   +        I   
Sbjct: 67  KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDL 126

Query: 373 AELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 432
           A+      ++D  PQ            LSGGQKQR+AIA  +  +P I++ DE+TS LD 
Sbjct: 127 AKKVGMEDYLDKEPQ-----------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDP 175

Query: 433 ESERVVQEALDKIMINRT-TVI-VAHRLSTVRNADLIAVIHQGKLV 476
           + +R +++ +  +   R  T+I + H +     AD + V  +GKL+
Sbjct: 176 KGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLI 221

Length = 271

>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR

 Score =  126 bits (317), Expect = 3e-33
 Identities = 72/221 (32%), Positives = 130/221 (58%), Gaps = 6/221 (2%)

Query: 259 GDIELKDIYFSYPS--RPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ 316
           G+I++ D+   Y +  +P  +    +   I  G    + G++GSGKS++     R  D  
Sbjct: 18  GEIKIHDLCVRYENNLKPVLKHVKAY---IKPGQKVGICGRTGSGKSSLSLAFFRMVDIF 74

Query: 317 AGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELA 376
            G+++IDG+++ +  L  +R ++ ++ Q+P+LF+ SI+ N++      +   +  A E+A
Sbjct: 75  DGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECK-CTDDRLWEALEIA 133

Query: 377 NAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESER 436
                + SLP GLD +V E G   S GQ+Q   +ARA ++   IL++DEAT+++D  +E 
Sbjct: 134 QLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATEN 193

Query: 437 VVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
           ++Q+ +     +RT V +AHR+ST+ +ADL+ V+ +G LVE
Sbjct: 194 ILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVE 234

The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score =  125 bits (317), Expect = 3e-33
 Identities = 75/228 (32%), Positives = 125/228 (54%), Gaps = 16/228 (7%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           IE++++  +YP+  G++     SLSI  G   AL+G SG+GKST++  +    +P +G V
Sbjct: 1   IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58

Query: 321 LIDGV---NLKEFQLKWIRGKIGLVSQEPVLFT-SSIKDNINYGKDGA-----SIAEIMA 371
           LIDG     LK   L+ +R +IG++ Q+  L    S+ +N+  G+ G      S+  +  
Sbjct: 59  LIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFP 118

Query: 372 AAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 431
             E   A   ++ +  GL     +   QLSGGQ+QR+AIARA+++ P+++L DE  ++LD
Sbjct: 119 KEEKQRALAALERV--GLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLD 176

Query: 432 AESERVVQEALDKIMI--NRTTVIVAHRLSTVR-NADLIAVIHQGKLV 476
             S R V + L +I      T ++  H++   R  AD I  +  G++V
Sbjct: 177 PASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV 224

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score =  133 bits (335), Expect = 5e-33
 Identities = 71/221 (32%), Positives = 135/221 (61%), Gaps = 4/221 (1%)

Query: 258  RGDIELKDIYFSYPSRPG-EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ 316
            RG I+ +D++  Y  RPG   + +G S  +       +VG++G+GKS++++ + R  + +
Sbjct: 1232 RGSIKFEDVHLRY--RPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE 1289

Query: 317  AGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELA 376
             G ++ID  ++ +F L  +R  + ++ Q PVLF+ +++ NI+   +    A++  A E A
Sbjct: 1290 KGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHND-ADLWEALERA 1348

Query: 377  NAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESER 436
            +    ID  P GLD  V E G   S GQ+Q +++ARA+L+  +IL+LDEAT+++D  ++ 
Sbjct: 1349 HIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDS 1408

Query: 437  VVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
            ++Q  + +   + T +++AHRL+T+ + D I V+  G+++E
Sbjct: 1409 LIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLE 1449

Length = 1495

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score =  124 bits (313), Expect = 5e-33
 Identities = 72/232 (31%), Positives = 116/232 (50%), Gaps = 36/232 (15%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           IE+K+++ S+       +  G  L++  G    ++G SGSGKST++  I    +P +G +
Sbjct: 1   IEIKNLHKSFG---DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI 57

Query: 321 LIDG--VNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYG--------KDGASIAEI 369
           +IDG  +   +  +  +R K+G+V Q+  LF   ++ +NI           K  A     
Sbjct: 58  IIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEA-EERA 116

Query: 370 MAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 429
           +   E    A   D+ P            QLSGGQ+QR+AIARA+  +P+++L DE TSA
Sbjct: 117 LELLEKVGLADKADAYPA-----------QLSGGQQQRVAIARALAMNPKVMLFDEPTSA 165

Query: 430 LDAESERVVQEALDKIMIN-----RTTVIVAHRLSTVRN-ADLIAVIHQGKL 475
           LD E   +V E LD +M +      T V+V H +   R  AD +  +  G++
Sbjct: 166 LDPE---LVGEVLD-VMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  124 bits (313), Expect = 2e-32
 Identities = 74/229 (32%), Positives = 127/229 (55%), Gaps = 18/229 (7%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           IE+K++  +YP   G Q     +L I  G   A++G SG+GKST++  +    DP +GE+
Sbjct: 4   IEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61

Query: 321 LIDGV---NLKEFQLKWIRGKIGLVSQEPVLFT-SSIKDNINYGKDG-----ASIAEIMA 371
           L +GV    LK  +L+ +R  IG++ Q+  L    S+ +N+  G+ G      S+  + +
Sbjct: 62  LFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFS 121

Query: 372 AAELANAAKFIDSLPQ-GLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 430
             + A A   +D+L + G+     +  + LSGGQ+QR+AIARA+++ P+I+L DE  ++L
Sbjct: 122 KEDKAQA---LDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASL 178

Query: 431 DAESERVVQEALDKIMINR--TTVIVAHRLSTVRN-ADLIAVIHQGKLV 476
           D ES + V + L  I      T ++  H++   +  AD I  +  G++V
Sbjct: 179 DPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV 227

Length = 258

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score =  121 bits (305), Expect = 5e-32
 Identities = 60/196 (30%), Positives = 97/196 (49%), Gaps = 16/196 (8%)

Query: 262 ELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 321
            +++I FSY  + G +I +  SL + +G   AL G++G+GK+T+  ++       +G +L
Sbjct: 1   RIENISFSY--KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSIL 58

Query: 322 IDGVNLKEFQLKWIRGKIGLVSQEP--VLFTSSIKDNINYGKDGASIAEIMAAAELANAA 379
           ++G  +K  +    R  IG V Q+    LFT S+++ +  G            A    A 
Sbjct: 59  LNGKPIKAKER---RKSIGYVMQDVDYQLFTDSVREELLLGLKELD-------AGNEQAE 108

Query: 380 KFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQ 439
             +  L   L  +   H   LSGGQKQR+AIA A+L    +L+ DE TS LD ++   V 
Sbjct: 109 TVLKDL--DLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVG 166

Query: 440 EALDKIMINRTTVIVA 455
           E + ++      VIV 
Sbjct: 167 ELIRELAAQGKAVIVI 182

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score =  124 bits (313), Expect = 6e-32
 Identities = 64/245 (26%), Positives = 116/245 (47%), Gaps = 38/245 (15%)

Query: 261 IELKDIYFSYPSRPGE-QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ--- 316
           +E+K++  S+P+  G  +  +G S  +  G    +VG+SGSGKS +   I          
Sbjct: 2   LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNAR 61

Query: 317 --AGEVLIDGVNL---KEFQLKWIRGK-IGLVSQEPVL-----------FTSSIKDNINY 359
              GE+L DG +L    E +L+ IRGK I ++ Q+P+                ++ +   
Sbjct: 62  IVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKG 121

Query: 360 GKDGASIAEIMAAAE---LANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK 416
                +    +   E   + +  + + S P         H  +LSGG +QR+ IA A+  
Sbjct: 122 LSKKEAKERAIELLELVGIPDPERRLKSYP---------H--ELSGGMRQRVMIAMALAL 170

Query: 417 DPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQG 473
           +P++L+ DE T+ALD   +  + + L ++        +++ H L  V   AD +AV++ G
Sbjct: 171 NPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAG 230

Query: 474 KLVEK 478
           ++VE+
Sbjct: 231 RIVEE 235

Length = 316

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score =  120 bits (302), Expect = 2e-31
 Identities = 68/205 (33%), Positives = 110/205 (53%), Gaps = 23/205 (11%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           IE  ++  +YP   G    +G ++SI +G    LVG SG+GKST++ LI +   P +G +
Sbjct: 1   IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58

Query: 321 LIDGV---NLKEFQLKWIRGKIGLVSQE-PVLFTSSIKDNINY-----GKDGASIAE-IM 370
            ++G    +L+   + ++R KIG+V Q+  +L   ++ +N+ +     G     I + + 
Sbjct: 59  RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVP 118

Query: 371 AAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 430
           AA EL   +    +LP            +LSGG++QR+AIARAI+  P IL+ DE T  L
Sbjct: 119 AALELVGLSHKHRALPA-----------ELSGGEQQRVAIARAIVNSPTILIADEPTGNL 167

Query: 431 DAESERVVQEALDKIMINRTTVIVA 455
           D ++   +   L KI    TTV+VA
Sbjct: 168 DPDTTWEIMNLLKKINKAGTTVVVA 192

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional

 Score =  121 bits (305), Expect = 2e-31
 Identities = 81/248 (32%), Positives = 123/248 (49%), Gaps = 33/248 (13%)

Query: 249 SNGVKLDDIRGDIELKDIYFSYPSRPGE-QIFNGFSLSIPSGTTAALVGQSGSGKSTVIS 307
           +    +      I+++++ F Y    G+       +L I      A +G SG GKST++ 
Sbjct: 2   AMMSMVATAPSKIQVRNLNFYY----GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLR 57

Query: 308 LIERFYD--PQ---AGEVLIDGVNL--KEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG 360
              R Y+  P+    GE+L+DG N+   +  +  +R K+G+V Q+P  F  SI DNI +G
Sbjct: 58  TFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFG 117

Query: 361 ---KDGASIAEI-------MAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAI 410
               +  S AE+       +  A L N  K  D L Q         G  LSGGQ+QR+ I
Sbjct: 118 VRLFEKLSRAEMDERVEWALTKAALWNEVK--DKLHQS--------GYSLSGGQQQRLCI 167

Query: 411 ARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRL-STVRNADLIAV 469
           AR I   P +LLLDE  SALD  S   ++E + ++  + T VIV H +    R +D  A 
Sbjct: 168 ARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAF 227

Query: 470 IHQGKLVE 477
           ++ G+L+E
Sbjct: 228 MYLGELIE 235

Length = 260

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score =  120 bits (303), Expect = 4e-31
 Identities = 70/209 (33%), Positives = 113/209 (54%), Gaps = 25/209 (11%)

Query: 283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEF---QLKWIRGK- 338
           SL +  G    ++G SGSGKST++  I R  +P +G+VLIDG ++      +L+ +R K 
Sbjct: 44  SLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103

Query: 339 IGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHG 397
           I +V Q   L    ++ +N+ +G     +  +  A     AA+ ++        +VG  G
Sbjct: 104 ISMVFQSFALLPHRTVLENVAFG---LEVQGVPRAEREERAAEALE--------LVGLEG 152

Query: 398 ------TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKI--MINR 449
                  +LSGG +QR+ +ARA+  DP ILL+DEA SALD    R +Q+ L ++   + +
Sbjct: 153 WEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQK 212

Query: 450 TTVIVAHRLS-TVRNADLIAVIHQGKLVE 477
           T V + H L   +R  D IA++  G+LV+
Sbjct: 213 TIVFITHDLDEALRLGDRIAIMKDGRLVQ 241

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score =  118 bits (299), Expect = 5e-31
 Identities = 71/230 (30%), Positives = 113/230 (49%), Gaps = 29/230 (12%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           I  +++  +YP   G +     S  IP G    L G SG+GKST++ LI     P  G++
Sbjct: 2   IRFENVSKAYPG--GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59

Query: 321 LIDGVN---LKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINY-----GKDGASIAE-IM 370
           L++G +   LK  ++ ++R +IG+V Q+  L    ++ +N+       GK    I   + 
Sbjct: 60  LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVS 119

Query: 371 AAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 430
              +L        +LP           +QLSGG++QR+AIARAI+  P +LL DE T  L
Sbjct: 120 EVLDLVGLKHKARALP-----------SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNL 168

Query: 431 DAESERVVQEALDKIMINR--TTVIVA-HRLSTVRNADL-IAVIHQGKLV 476
           D +    +    ++  INR  TTV++A H L  V      +  +  G+LV
Sbjct: 169 DPDLSWEIMRLFEE--INRLGTTVLMATHDLELVNRMRHRVLALEDGRLV 216

Length = 223

>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional

 Score =  119 bits (301), Expect = 8e-31
 Identities = 79/236 (33%), Positives = 118/236 (50%), Gaps = 33/236 (13%)

Query: 261 IELKDIYFSYPSRPGE-QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD----- 314
           +E++++   Y    G+ Q     S+ IP     A +G SG GKST++    R  D     
Sbjct: 26  LEVRNLNLFY----GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNC 81

Query: 315 PQAGEVLIDGVNL--KEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG------KDGASI 366
              GE+ +DG N+  K+  +  +R ++G+V Q P  F  SI +N+ YG       +   +
Sbjct: 82  RIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVL 141

Query: 367 AEI----MAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILL 422
            E     +  A L +  K  D L         E+   LSGGQ+QR+ IARAI  +P +LL
Sbjct: 142 DEAVERSLRGAALWDEVK--DRL--------HENAFGLSGGQQQRLVIARAIAIEPEVLL 191

Query: 423 LDEATSALDAESERVVQEALDKIMINRTTVIVAHRL-STVRNADLIAVIHQGKLVE 477
           LDE TSALD  S   ++E + ++    T VIV H +    R +D  A ++ GKLVE
Sbjct: 192 LDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVE 247

Length = 272

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  119 bits (301), Expect = 9e-31
 Identities = 75/226 (33%), Positives = 119/226 (52%), Gaps = 23/226 (10%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           IE++D++F Y    G +   G SLSIP G+  AL+G +G+GKST++  +   Y PQ G V
Sbjct: 5   IEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEP--VLFTSSIKDN-----INYGKDGASIAE-IMAA 372
            + G  +     KW+R K+GLV Q+P   +F+S++ D+     +N G D   +   +  A
Sbjct: 63  KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEA 122

Query: 373 AELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 432
            +      F D  P             LS GQK+R+AIA  +  DP +++LDE  + LD 
Sbjct: 123 LKAVRMWDFRDKPPY-----------HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP 171

Query: 433 ESERVVQEALDKIMINRTTVIVA-HRLSTVRN-ADLIAVIHQGKLV 476
             +  + E LD++     TVIVA H +      AD + V+ +G+++
Sbjct: 172 RGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVL 217

Length = 274

>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  116 bits (293), Expect = 5e-30
 Identities = 73/231 (31%), Positives = 125/231 (54%), Gaps = 23/231 (9%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----P 315
           IE+++    Y  +   +     ++ I      A++G SG GK+T++  I R  D      
Sbjct: 4   IEIENFSAYYGEK---KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR 60

Query: 316 QAGEVLIDGVNLKE--FQLKWIRGKIGLVSQEPVLFTSSIKDNINYG------KDGASIA 367
             G++   G ++ +    +   R K+G+V Q+P  F  SI DN+ +G      K    + 
Sbjct: 61  VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLD 120

Query: 368 EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 427
            I+  + L  AA + D +   L+    + GT+LSGGQ+QR+ IARA+  +P ++LLDE T
Sbjct: 121 RIVEES-LKKAALW-DEVKSELN----KPGTRLSGGQQQRLCIARALAVEPEVILLDEPT 174

Query: 428 SALDAESERVVQEALDKIMINRTTVIVAHRLS-TVRNADLIAVIHQGKLVE 477
           SALD  + + +++ L+++  N T VIV H +   +R AD IA +++G+L+E
Sbjct: 175 SALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIE 225

Length = 250

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score =  119 bits (300), Expect = 6e-30
 Identities = 75/227 (33%), Positives = 120/227 (52%), Gaps = 21/227 (9%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           I + ++   + +       +  SL I SG   AL+G SG+GKST++ +I     P AG +
Sbjct: 3   IRINNVKKRFGAFGA---LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRI 59

Query: 321 LIDGVNLKEFQLKWIRG-KIGLVSQEPVLFT-SSIKDNINYG----KDGASIAEIMA-AA 373
            ++G  L +     +R  K+G V Q   LF   ++ DNI +G    K+  S AEI A   
Sbjct: 60  RLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVE 119

Query: 374 ELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 433
           EL    +        L+ +   +  QLSGGQ+QR+A+ARA+  +P++LLLDE   ALDA+
Sbjct: 120 ELLRLVQ--------LEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAK 171

Query: 434 SERVVQEALDKIM--INRTTVIVAHRLS-TVRNADLIAVIHQGKLVE 477
             + ++  L K+   +  TTV V H     +  AD + V++QG++ +
Sbjct: 172 VRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQ 218

Length = 345

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score =  114 bits (287), Expect = 2e-29
 Identities = 67/207 (32%), Positives = 105/207 (50%), Gaps = 18/207 (8%)

Query: 281 GFSLSIP---SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI-- 335
            F+L I    +     + G SG+GKST++  I     P  G ++++G  L + + K    
Sbjct: 12  DFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLP 71

Query: 336 --RGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTM 392
             + KIGLV Q+  LF   ++++N+ +G       E   + +     + +D L  GLD +
Sbjct: 72  PQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVD-----ELLDLL--GLDHL 124

Query: 393 VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRT 450
           +  +  QLSGG+KQR+A+ARA+   P +LLLDE  SALD      +   L +I   +N  
Sbjct: 125 LNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIP 184

Query: 451 TVIVAHRLSTV-RNADLIAVIHQGKLV 476
            + V H LS     AD I V+  G+L 
Sbjct: 185 VIFVTHDLSEAEYLADRIVVMEDGRLQ 211

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional

 Score =  114 bits (288), Expect = 4e-29
 Identities = 77/220 (35%), Positives = 109/220 (49%), Gaps = 29/220 (13%)

Query: 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA-----GEVLIDGVNLKEFQ 331
           Q      L IP  T  A +G SG GKST +  + R  D        G++ +DG ++ + +
Sbjct: 33  QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92

Query: 332 LKWI--RGKIGLVSQEPVLFTSSIKDNINYG-------KDGASIAEIMAA----AELANA 378
           L  +  R ++G+V Q+P  F  SI +N+ YG       +  A + EI+      A L   
Sbjct: 93  LDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEE 152

Query: 379 AKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVV 438
            K  D L         E GT LSGGQ+QR+ IARAI   P ++L+DE  SALD  +   V
Sbjct: 153 VK--DRL--------HEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKV 202

Query: 439 QEALDKIMINRTTVIVAHRLS-TVRNADLIAVIHQGKLVE 477
           +E +D++  N T VIV H +    R +   A  H G LVE
Sbjct: 203 EELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVE 242

Length = 267

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score =  119 bits (300), Expect = 6e-29
 Identities = 61/244 (25%), Positives = 112/244 (45%), Gaps = 41/244 (16%)

Query: 261 IELKDIYFSYPSRPGE-QIFNGFSLSIPSGTTAALVGQSGSGKST----VISLIERFYDP 315
           +E++++   + +  G        S  +  G    +VG+SGSGKST    ++ L+      
Sbjct: 6   LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65

Query: 316 QAGEVLIDG---VNLKEFQLKWIRGK-IGLVSQEPVLFTS---------------SIKDN 356
            +GEV++DG   + L E +++ +RGK I ++ Q+P   TS                +   
Sbjct: 66  TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDP--MTSLNPVMTIGDQIREALRLHGK 123

Query: 357 INYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK 416
            +  +      E++    L +  +  D  P            QLSGG +QR+ IA A+  
Sbjct: 124 GSRAEARKRAVELLEQVGLPDPER-RDRYPH-----------QLSGGMRQRVMIAMALAL 171

Query: 417 DPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQG 473
            P++L+ DE T+ALD  ++  + + L  +        + + H L  V   AD + V+++G
Sbjct: 172 KPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKG 231

Query: 474 KLVE 477
           ++VE
Sbjct: 232 EIVE 235

Length = 539

>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional

 Score =  114 bits (286), Expect = 6e-29
 Identities = 74/209 (35%), Positives = 111/209 (53%), Gaps = 20/209 (9%)

Query: 283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGVNL--KEFQLKWI 335
           +L I      AL+G SG GKST +  + R  D        GEVL+DG ++   +  +  +
Sbjct: 23  NLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQL 82

Query: 336 RGKIGLVSQEPVLFTSSIKDNINYG------KDGASIAEIMAAAELANAAKFIDSLPQGL 389
           R ++G+V Q+P  F  SI DN+ YG      KD   + EI+  + L  AA + D +   L
Sbjct: 83  RKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKS-LKGAALW-DEVKDRL 140

Query: 390 DTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINR 449
                +    LSGGQ+QR+ IARA+  +P +LL+DE TSALD  S   ++E + ++  + 
Sbjct: 141 K----KSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDY 196

Query: 450 TTVIVAHRL-STVRNADLIAVIHQGKLVE 477
           T VIV H +    R +D  A    G++VE
Sbjct: 197 TIVIVTHNMQQASRISDKTAFFLNGEIVE 225

Length = 250

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score =  112 bits (283), Expect = 1e-28
 Identities = 69/228 (30%), Positives = 111/228 (48%), Gaps = 28/228 (12%)

Query: 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 319
            + L D+ FSY   P       F L++P+G   A++G SG+GKST+++LI  F  P +GE
Sbjct: 1   MLALDDVRFSYGHLPMR-----FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGE 55

Query: 320 VLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYGK------DGASIAEIMAA 372
           +LI+GV+            + ++ QE  LF   ++  NI  G       +     ++ AA
Sbjct: 56  ILINGVDHT--ASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAA 113

Query: 373 AELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 432
           A     A F+  LP            +LSGGQ+QR+A+AR ++++  ILLLDE  SALD 
Sbjct: 114 AAQVGLAGFLKRLP-----------GELSGGQRQRVALARCLVREQPILLLDEPFSALDP 162

Query: 433 ESERVVQEALDKIMINR--TTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477
                +   + ++   R  T ++V H        AD +  +  G++  
Sbjct: 163 ALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAA 210

Length = 231

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score =  113 bits (285), Expect = 1e-28
 Identities = 66/228 (28%), Positives = 114/228 (50%), Gaps = 32/228 (14%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           IE++++  SY +RP   +    SLS+  G   AL+G +G+GKST++  I     P +GE+
Sbjct: 5   IEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVL---FTSSIKDNI---NYGKDG-------ASIA 367
            I G  +++ +    R +IG V Q+  +   F  ++KD +    YGK G           
Sbjct: 62  KIFGKPVRKRRK---RLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKE 118

Query: 368 EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 427
           ++  A E        D         +GE    LSGGQKQR+ +ARA+ ++P +LLLDE  
Sbjct: 119 KVDEALERVGMEDLRDRQ-------IGE----LSGGQKQRVLLARALAQNPDLLLLDEPF 167

Query: 428 SALDAESERVVQEALDKI-MINRTTVIVAHRLSTVR-NADLIAVIHQG 473
           + +D   ++ + + L ++    +T ++V H L  V    D +  +++ 
Sbjct: 168 TGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRH 215

Length = 254

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score =  115 bits (290), Expect = 1e-28
 Identities = 73/215 (33%), Positives = 111/215 (51%), Gaps = 24/215 (11%)

Query: 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNL---KEFQLK 333
           Q  N  SL +P+G    ++G SG+GKST+I  +     P +G V++DG +L      +L 
Sbjct: 19  QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELT 78

Query: 334 WIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAK-FIDSLPQGLDTM 392
             R +IG++ Q   L +S                 +    EL N  K  I      L  +
Sbjct: 79  KARRQIGMIFQHFNLLSSR-----------TVFGNVALPLELDNTPKDEIKRKVTELLAL 127

Query: 393 VG------EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKI- 445
           VG       + + LSGGQKQR+AIARA+  +P++LL DEATSALD  + + + E L +I 
Sbjct: 128 VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEIN 187

Query: 446 -MINRTTVIVAHRLSTV-RNADLIAVIHQGKLVEK 478
             +  T +++ H +  V R  D +AVI  G+L+E+
Sbjct: 188 RRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ 222

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score =  111 bits (281), Expect = 1e-28
 Identities = 60/211 (28%), Positives = 109/211 (51%), Gaps = 14/211 (6%)

Query: 263 LKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 322
           LK+I   +  +    I +  +L+I  G   A++G+SGSGKST++++I       +G+V +
Sbjct: 1   LKNISKKFGDK---VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYL 57

Query: 323 DGVNLKEFQ----LKWIRGKIGLVSQEPVLF-TSSIKDNINYGKDGASIAEIMAAAELAN 377
           +G            K+ R K+G + Q   L    ++++N++ G     +++     +   
Sbjct: 58  NGQETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKE 117

Query: 378 AAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERV 437
           A + +  L   L   + E    LSGG++QR+A+ARAILK P ++L DE T +LD ++   
Sbjct: 118 ALEKV-GLNLKLKQKIYE----LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDE 172

Query: 438 VQEALDKIM-INRTTVIVAHRLSTVRNADLI 467
           V + L ++    +T +IV H     + AD +
Sbjct: 173 VLDLLLELNDEGKTIIIVTHDPEVAKQADRV 203

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score =  112 bits (283), Expect = 1e-28
 Identities = 64/200 (32%), Positives = 106/200 (53%), Gaps = 11/200 (5%)

Query: 283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLV 342
           SL +  G    ++G +GSGKS ++  I  F  P +G++L++G ++    L   +  I  V
Sbjct: 19  SLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITN--LPPEKRDISYV 76

Query: 343 SQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLS 401
            Q   LF   ++  NI YG     + +     ++   A+ +     G+D ++      LS
Sbjct: 77  PQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEML-----GIDHLLNRKPETLS 131

Query: 402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVI-VAHRLS 459
           GG++QR+AIARA++ +P+ILLLDE  SALD  ++  ++E L KI      TV+ V H   
Sbjct: 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE 191

Query: 460 TVRN-ADLIAVIHQGKLVEK 478
                AD +A++  GKL++ 
Sbjct: 192 EAWALADKVAIMLNGKLIQV 211

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score =  115 bits (290), Expect = 2e-28
 Identities = 70/207 (33%), Positives = 113/207 (54%), Gaps = 15/207 (7%)

Query: 280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEF---QLKWI- 335
           N   L+I  G    ++G SGSGKST + ++ R  +P AG++ IDG N+ +    +L+ + 
Sbjct: 10  NDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVR 69

Query: 336 RGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQ-GLDTMV 393
           R KIG+V Q+  LF   +I  N + G       E++   E     K ++ L   GL+   
Sbjct: 70  RKKIGMVFQQFALFPHMTILQNTSLG------PELLGWPEQERKEKALELLKLVGLEEYE 123

Query: 394 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTT 451
             +  +LSGG +QR+ +ARA+  +P ILL+DEA SALD      +Q+ L K+   + +T 
Sbjct: 124 HRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTI 183

Query: 452 VIVAHRL-STVRNADLIAVIHQGKLVE 477
           V + H L   +R  D I ++  G++V+
Sbjct: 184 VFITHDLDEAIRIGDRIVIMKAGEIVQ 210

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  113 bits (285), Expect = 2e-28
 Identities = 80/231 (34%), Positives = 117/231 (50%), Gaps = 24/231 (10%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----P 315
           IE +D+   Y     EQ  +  S+ IP     A++G SG GKST +  I R  D      
Sbjct: 40  IEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAAR 96

Query: 316 QAGEVLIDGVNLKEFQLK--WIRGKIGLVSQEPVLFTSSIKDNINYG-----KDGASIAE 368
             GE+   G N+ +  +    +R +IG+V Q+P  F  SI DN+ YG      DG     
Sbjct: 97  VEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDER 156

Query: 369 IMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 428
           +  +  L  AA + D +   LD      G  LSGGQ+QR+ IARAI  DP ++L+DE  S
Sbjct: 157 VEES--LRRAALW-DEVKDQLD----SSGLDLSGGQQQRLCIARAIAPDPEVILMDEPAS 209

Query: 429 ALDAESERVVQEALDKIMINRTTVIVAHRL-STVRNADLIAV-IHQGKLVE 477
           ALD  +   +++ ++++    T VIV H +    R +D  AV +  G+LVE
Sbjct: 210 ALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVE 260

Length = 285

>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  112 bits (282), Expect = 2e-28
 Identities = 73/214 (34%), Positives = 114/214 (53%), Gaps = 19/214 (8%)

Query: 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG-----EVLIDGVNL-KEF 330
           Q     +L IP+    AL+G SG GKST++  + R  D   G     ++ +DG ++    
Sbjct: 17  QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNI 76

Query: 331 QLKWIRGKIGLVSQEPVLFTSSIKDNINYG------KDGASIAEIMAAAELANAAKFIDS 384
            +  +R K+G+V Q+P  F  SI +N+ YG      KD   + E++  + L  AA + D 
Sbjct: 77  DVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERS-LRGAALW-DE 134

Query: 385 LPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDK 444
           +   L +    H   LSGGQ+QR+ IAR I  +P ++L+DE TSALD  +   ++E +++
Sbjct: 135 VKDRLKS----HAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEE 190

Query: 445 IMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477
           +  N T VIV H +   R  +D  A    G+LVE
Sbjct: 191 LKKNYTIVIVTHSMQQARRISDRTAFFLMGELVE 224

Length = 249

>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional

 Score =  112 bits (283), Expect = 3e-28
 Identities = 79/235 (33%), Positives = 112/235 (47%), Gaps = 31/235 (13%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA--- 317
           +  KD++  Y  +  E I  G  +        AL+G SGSGKST +  + R  D      
Sbjct: 21  LSTKDLHVYYGKK--EAIK-GIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIAR 77

Query: 318 --GEVLIDG--VNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG------KDGASIA 367
             G++L  G  +N KE  +  +R  IG+V Q P  F  SI +NI +       KD   + 
Sbjct: 78  VTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLD 137

Query: 368 EI----MAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLL 423
           EI    +  A L +  K  D L         +    LSGGQ+QR+ IARAI   P ILL+
Sbjct: 138 EIVETSLKQAALWDQVK--DDL--------HKSALTLSGGQQQRLCIARAIAVKPDILLM 187

Query: 424 DEATSALDAESERVVQEALDKIMINRTTVIVAHRLS-TVRNADLIAVIHQGKLVE 477
           DE  SALD  S   ++E + ++  N T +IV H +    R +D  A  + G L+E
Sbjct: 188 DEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIE 242

Length = 267

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score =  111 bits (279), Expect = 3e-28
 Identities = 61/217 (28%), Positives = 103/217 (47%), Gaps = 33/217 (15%)

Query: 262 ELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 321
           E++D+  SY   P   +    S  +  G   A+VG +G+GKST++  I     P +G + 
Sbjct: 1   EVEDLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIR 57

Query: 322 IDGVNLKEFQLKWIRGKIGLVSQEPVL---FTSSIKDNI---NYGKDG-------ASIAE 368
           + G  L++      R +IG V Q   +   F  S++D +    YG  G       A  A+
Sbjct: 58  VFGKPLEKE-----RKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAK 112

Query: 369 IMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 428
           +  A E    ++  D               +LSGGQ+QR+ +ARA+++DP +LLLDE  +
Sbjct: 113 VDEALERVGLSELADR-----------QIGELSGGQQQRVLLARALVQDPDLLLLDEPFA 161

Query: 429 ALDAESERVVQEALDKI-MINRTTVIVAHRLSTVRNA 464
            +D +++  + E L ++     T ++V H L  V   
Sbjct: 162 GVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEY 198

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score =  111 bits (279), Expect = 3e-28
 Identities = 59/229 (25%), Positives = 116/229 (50%), Gaps = 30/229 (13%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           ++L+++   Y  +   +  +G SL++  G    L+G +G+GK+T++ ++     P +G +
Sbjct: 1   LQLENLTKRYGKK---RALDGVSLTLGPGMYG-LLGPNGAGKTTLMRILATLTPPSSGTI 56

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEP----------VLFTSSIKDNINYGKDGASIAEIM 370
            IDG ++ + Q + +R +IG + QE            L   +    I   +  A + E++
Sbjct: 57  RIDGQDVLK-QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVL 115

Query: 371 AAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 430
               L + AK            +G     LSGG ++R+ IA+A++ DP IL++DE T+ L
Sbjct: 116 ELVNLGDRAK----------KKIG----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGL 161

Query: 431 DAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVEK 478
           D E     +  L ++  +R  ++  H +  V +  + +AV+++GKLV +
Sbjct: 162 DPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFE 210

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score =  111 bits (279), Expect = 5e-28
 Identities = 75/225 (33%), Positives = 118/225 (52%), Gaps = 22/225 (9%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           IEL+++   Y    G    +G SL I  G    L+G SG GK+T++ LI  F  P +GE+
Sbjct: 1   IELENVSKFYG---GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYG--KDGASIAEIMAAAELAN 377
           L+DG ++    L   +  +  V Q   LF   ++ +NI +G        AEI     +A 
Sbjct: 58  LLDGKDIT--NLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEI--KERVAE 113

Query: 378 AAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERV 437
           A   +      L+       +QLSGGQ+QR+AIARA++ +P++LLLDE   ALD +  + 
Sbjct: 114 ALDLV-----QLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKD 168

Query: 438 VQEALDKI--MINRTTVIVAHRLS---TVRNADLIAVIHQGKLVE 477
           +Q  L ++   +  T V V H      T+  +D IAV+++GK+ +
Sbjct: 169 MQLELKRLQKELGITFVFVTHDQEEALTM--SDRIAVMNKGKIQQ 211

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score =  111 bits (279), Expect = 5e-28
 Identities = 72/207 (34%), Positives = 110/207 (53%), Gaps = 21/207 (10%)

Query: 280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG-----VNLKEFQLKW 334
           +  SL IPSG   AL+G SGSGK+T++ LI     P +G +L  G     V ++E     
Sbjct: 19  DDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERN--- 75

Query: 335 IRGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMV 393
               +G V Q   LF   ++ DN+ +G      +E    AE+      +  L Q LD + 
Sbjct: 76  ----VGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQ-LDWLA 130

Query: 394 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA----ESERVVQEALDKIMINR 449
             +  QLSGGQ+QR+A+ARA+  +P++LLLDE   ALDA    E  R ++   D++ +  
Sbjct: 131 DRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHV-- 188

Query: 450 TTVIVAHRLS-TVRNADLIAVIHQGKL 475
           TTV V H     +  AD + V+++G++
Sbjct: 189 TTVFVTHDQEEALEVADRVVVMNKGRI 215

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score =  110 bits (278), Expect = 6e-28
 Identities = 63/219 (28%), Positives = 111/219 (50%), Gaps = 12/219 (5%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           +E+  + F Y +R      +  S ++  G   AL+G +G+GKST+ SL+ R Y  Q G++
Sbjct: 2   LEVAGLSFRYGARRA---LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAA 379
            + G +L+      +   +G+V Q+P L    S++ N+ Y    A++  +  A   A  A
Sbjct: 59  SVAGHDLRRAPRAALAR-LGVVFQQPTLDLDLSVRQNLRYH---AALHGLSRAEARARIA 114

Query: 380 KFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESER-VV 438
           + +  L  GL     +   +L+GG ++R+ IARA+L  P +LLLDE T  LD  S   + 
Sbjct: 115 ELLARL--GLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIT 172

Query: 439 QEALDKIMINRTTVIVA-HRLSTVRNADLIAVIHQGKLV 476
                       +V+ A H +  +   D + V+H+G+++
Sbjct: 173 AHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVL 211

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  111 bits (278), Expect = 6e-28
 Identities = 82/232 (35%), Positives = 115/232 (49%), Gaps = 25/232 (10%)

Query: 261 IELKDIYFSYPSRPGE-QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD--PQA 317
           I+ +D+ F Y    G+     G S+ I   +  A +G SG GKST + L  R  D  P  
Sbjct: 4   IDARDVNFWY----GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT 59

Query: 318 ---GEVLIDGVNL--KEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG------KDGASI 366
              GE+ IDG N+  K  Q+  +R  +G+V Q P  F  SI +N+ YG      KD A I
Sbjct: 60  RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFI 119

Query: 367 AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 426
            +     E    A   D +   L     E    LSGGQ+QR+ IARA+   P +LL+DE 
Sbjct: 120 RQ--RVEETLKGAALWDEVKDKLK----ESAFALSGGQQQRLCIARAMAVSPSVLLMDEP 173

Query: 427 TSALDAESERVVQEALDKIMINRTTVIVAHRL-STVRNADLIAVIHQGKLVE 477
            SALD  S   V+E + ++  + T VIV H +    R +D  A  + G++VE
Sbjct: 174 ASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVE 225

Length = 250

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score =  111 bits (280), Expect = 7e-28
 Identities = 66/226 (29%), Positives = 106/226 (46%), Gaps = 49/226 (21%)

Query: 261 IELKDIYFSYPSRPGEQ------IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD 314
           +E+K++   +P   G          +G S SI  G T  LVG+SG GKST+  LI    +
Sbjct: 5   LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64

Query: 315 PQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAE 374
           P +GE+L +G ++ +   +  R ++                            E++    
Sbjct: 65  PTSGEILFEGKDITKLSKEERRERV---------------------------LELLEKVG 97

Query: 375 LANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 434
           L    +F+   P         H  +LSGGQ+QRI IARA+  +P++++ DE  SALD   
Sbjct: 98  LP--EEFLYRYP---------H--ELSGGQRQRIGIARALALNPKLIVADEPVSALDVSV 144

Query: 435 ERVVQEALDKIMINR--TTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477
           +  +   L  +      T + ++H LS VR  +D IAV++ GK+VE
Sbjct: 145 QAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVE 190

Length = 268

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score =  110 bits (277), Expect = 9e-28
 Identities = 71/211 (33%), Positives = 108/211 (51%), Gaps = 23/211 (10%)

Query: 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIR 336
           Q  +  +L +P+G+  AL+G SGSGKST++ +I     P +G + ++G +      +   
Sbjct: 14  QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR--D 71

Query: 337 GKIGLVSQEPVLFTS-SIKDNINYG-----KDGASI-AEIMAAAELANAAKFIDSLPQGL 389
            KIG V Q   LF   +++DNI +G        A I A +    EL       D  P   
Sbjct: 72  RKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYP--- 128

Query: 390 DTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--I 447
                    QLSGGQ+QR+A+ARA+  +P++LLLDE   ALDA+  + ++  L K+   +
Sbjct: 129 --------NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEV 180

Query: 448 NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477
           + TTV V H        AD I V+  GK+ +
Sbjct: 181 HVTTVFVTHDQEEAMEVADRIVVMSNGKIEQ 211

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  111 bits (280), Expect = 9e-28
 Identities = 68/232 (29%), Positives = 113/232 (48%), Gaps = 32/232 (13%)

Query: 261 IELKDIYFSYP--SRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG 318
           I ++ I F YP  +          S S+  G   A+VG +GSGKST+  L+     P+AG
Sbjct: 6   IRVEHISFRYPDAATYA---LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG 62

Query: 319 EVLIDGVNLKEFQLKWIRGKIGLVSQEP--VLFTSSIKDNINYGKDGASIA-EIM----- 370
            + + G+ L E  +  +R ++G+V Q P      ++++D++ +G +   +  E M     
Sbjct: 63  TITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVD 122

Query: 371 AAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 430
            A        F++  P            +LSGGQKQR+AIA  +   P I++LDEATS L
Sbjct: 123 QALRQVGMEDFLNREPH-----------RLSGGQKQRVAIAGVLALQPDIIILDEATSML 171

Query: 431 DAESERVVQEALDKIMI----NRTTVI-VAHRLSTVRNADLIAVIHQGKLVE 477
           D       +E L+ +         TV+ + H L     AD + V+++G+++E
Sbjct: 172 DPRGR---REVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILE 220

Length = 279

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  110 bits (277), Expect = 2e-27
 Identities = 72/228 (31%), Positives = 117/228 (51%), Gaps = 27/228 (11%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           IE+K++ F Y     +   N  S  +  G   +++G +GSGKST + LI+   + ++G++
Sbjct: 5   IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEP--VLFTSSIKDNINYGKDGASIA------EIMAA 372
           +IDG  L E  +  IR KIG+V Q P      ++++D++ +G +   I        +  A
Sbjct: 65  IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEA 124

Query: 373 AELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 432
            EL     F +  P            +LSGGQKQR+AIA A+   P+I++LDEATS LD 
Sbjct: 125 LELVGMQDFKEREP-----------ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP 173

Query: 433 ESE----RVVQEALDKIMINRTTVI-VAHRLSTVRNADLIAVIHQGKL 475
           E      + ++   D     + TVI + H L  V  +D + V+  G++
Sbjct: 174 EGRLELIKTIKGIRDD---YQMTVISITHDLDEVALSDRVLVMKNGQV 218

Length = 279

>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional

 Score =  109 bits (274), Expect = 3e-27
 Identities = 76/217 (35%), Positives = 117/217 (53%), Gaps = 20/217 (9%)

Query: 275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD--PQA---GEVLIDGVNLKE 329
             Q  +  SL        AL+G SG GKST +  + R  D  P A   GE+L+DG N+ +
Sbjct: 18  DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYD 77

Query: 330 FQLKWI--RGKIGLVSQEPVLFTSSIKDNINYG------KDGASIAEIMAAAELANAAKF 381
             +  +  R ++G+V Q+P  F  SI +N+ YG      KD A +AE +  + L +AA +
Sbjct: 78  PHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERS-LRHAALW 136

Query: 382 IDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEA 441
            D +   L     E    LSGGQ+QR+ IARA+  +P +LL+DE  SALD  + + ++E 
Sbjct: 137 -DEVKDRLH----ESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEEL 191

Query: 442 LDKIMINRTTVIVAHRL-STVRNADLIAVIHQGKLVE 477
           + ++    T +IV H +    R +D+ A  + GKL+E
Sbjct: 192 IHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIE 228

Length = 253

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score =  109 bits (273), Expect = 3e-27
 Identities = 68/220 (30%), Positives = 115/220 (52%), Gaps = 11/220 (5%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           +E+ D+  SY S+   Q     S     G    L+G++G+GK+T++ +I     P +G+V
Sbjct: 2   LEVTDLTKSYGSK--VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAA 379
            IDGV+        +R KIG++  E  L+   + ++N+ Y      ++     A +A  +
Sbjct: 60  TIDGVDTVRDPSF-VRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELS 118

Query: 380 KFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQ 439
           K +  L + LD  VGE     S G KQ++AIARA++ DP IL+LDE TS LD  + R   
Sbjct: 119 KRLQ-LLEYLDRRVGE----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFH 173

Query: 440 EALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477
           + + ++    R  +  +H +  V    D + V+H+G++V 
Sbjct: 174 DFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVL 213

Length = 245

>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  109 bits (273), Expect = 4e-27
 Identities = 70/221 (31%), Positives = 108/221 (48%), Gaps = 27/221 (12%)

Query: 275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGVNL-- 327
            +QI    +L I      A +G SG GKST +    R  D        GE+ IDG+++  
Sbjct: 17  SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYS 76

Query: 328 KEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQ 387
            +  +  +R K+G+V Q+P  F  SI DN+ YG              LA   K +D + +
Sbjct: 77  VDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPK---------LHGLAKNKKKLDEIVE 127

Query: 388 GLDTMVG----------EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERV 437
              T VG          +   +LSGGQ+QR+ IARAI   P +LL+DE  SALD  +  V
Sbjct: 128 KSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNV 187

Query: 438 VQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477
           ++  + ++  N T ++V H +   +  +D +A    G++VE
Sbjct: 188 IENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVE 228

Length = 251

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score =  108 bits (271), Expect = 4e-27
 Identities = 61/223 (27%), Positives = 115/223 (51%), Gaps = 18/223 (8%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           +EL+++   + +       +  +L I  G    L+G SG GK+T + +I    +P +G +
Sbjct: 1   VELENVTKRFGNVT---ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYG--KDGASIAEIMAAAELAN 377
            I G ++ +   K  R  I +V Q   L+   ++ DNI +G         EI     +  
Sbjct: 58  YIGGRDVTDLPPK-DRD-IAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEI--DERVRE 113

Query: 378 AAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERV 437
            A+ +      ++ ++     QLSGGQ+QR+A+ RAI+++P++ L+DE  S LDA+    
Sbjct: 114 VAELL-----QIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQ 168

Query: 438 VQEALDKIM--INRTTVIVAH-RLSTVRNADLIAVIHQGKLVE 477
           ++  L ++   +  TT+ V H ++  +  AD IAV++ G++ +
Sbjct: 169 MRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQ 211

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score =  107 bits (269), Expect = 6e-27
 Identities = 74/215 (34%), Positives = 108/215 (50%), Gaps = 26/215 (12%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           IE  ++  +YP   G    +  SL I  G    L G SG+GK+T++ L+     P  G+V
Sbjct: 2   IEFHNVSKAYP--GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59

Query: 321 LIDGVN---LKEFQLKWIRGKIGLVSQE-PVLFTSSIKDNINY-----GKDGASIAE-IM 370
            I G +   L+  QL  +R +IG+V Q+  +L   ++ +N+       GK    I   + 
Sbjct: 60  RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVG 119

Query: 371 AAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 430
           AA          D+ P+           QLSGG++QR+AIARAI+  P +LL DE T  L
Sbjct: 120 AALRQVGLEHKADAFPE-----------QLSGGEQQRVAIARAIVNSPPLLLADEPTGNL 168

Query: 431 DAE-SERVVQEALDKIMINRTTVIVA-HRLSTVRN 463
           D + SER++   L ++    TTVIVA H LS V  
Sbjct: 169 DPDLSERILD-LLKRLNKRGTTVIVATHDLSLVDR 202

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  108 bits (270), Expect = 7e-27
 Identities = 76/211 (36%), Positives = 111/211 (52%), Gaps = 13/211 (6%)

Query: 276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA---GEVLIDGVNLKEFQL 332
           +Q     ++ I      AL+G SG GKST +    R  D  A   G V I+G ++K   +
Sbjct: 15  KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDV 74

Query: 333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQ-GLDT 391
             +R  +G+V Q+P +F  SI +NI+Y    A     M   +    A  +D L + GL  
Sbjct: 75  VALRKNVGMVFQQPNVFVKSIYENISY----APKLHGMIKNKDEEEALVVDCLQKVGLFE 130

Query: 392 MVGEHGTQ----LSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI 447
            V +   Q    LSGGQ+QR+ IARA+   P++LLLDE TSALD  S  V++E L ++  
Sbjct: 131 EVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH 190

Query: 448 NRTTVIVAHRLST-VRNADLIAVIHQGKLVE 477
           N + ++V H +    R AD  A  H G+L+E
Sbjct: 191 NLSMIMVTHNMQQGKRVADYTAFFHLGELIE 221

Length = 246

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score =  111 bits (279), Expect = 8e-27
 Identities = 68/212 (32%), Positives = 110/212 (51%), Gaps = 25/212 (11%)

Query: 280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG---VNLKEFQLKWIR 336
           N  SL +  G    ++G SGSGKST++ L+ R  +P  GE+L+DG     L   +L+ +R
Sbjct: 45  NDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELR 104

Query: 337 -GKIGLVSQEPVLFTS-SIKDNINYGKDGASIAE------IMAAAELANAAKFIDSLPQG 388
             KI +V Q   L    ++ +N+ +G +   + +       + A EL     + D  P  
Sbjct: 105 RKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP-- 162

Query: 389 LDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKI--M 446
                     +LSGG +QR+ +ARA+  DP ILL+DEA SALD      +Q+ L ++   
Sbjct: 163 ---------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAK 213

Query: 447 INRTTVIVAHRLS-TVRNADLIAVIHQGKLVE 477
           + +T V + H L   +R  D IA++  G++V+
Sbjct: 214 LKKTIVFITHDLDEALRIGDRIAIMKDGEIVQ 245

Length = 386

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score =  109 bits (275), Expect = 1e-26
 Identities = 65/201 (32%), Positives = 106/201 (52%), Gaps = 15/201 (7%)

Query: 283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNL----KEFQLKWIRGK 338
             ++P     A+ G+SGSGK+T+I LI     P  GE++++G  L    K   L   + +
Sbjct: 17  DFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRR 76

Query: 339 IGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHG 397
           IG V QE  LF   S++ N+ YG     +     +    +  + I+ L  G+  ++G   
Sbjct: 77  IGYVFQEARLFPHLSVRGNLRYG-----MKRARPSERRISFERVIELL--GIGHLLGRLP 129

Query: 398 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVA 455
            +LSGG+KQR+AI RA+L  PR+LL+DE  +ALD   +  +   L+++        + V+
Sbjct: 130 GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVS 189

Query: 456 HRLSTV-RNADLIAVIHQGKL 475
           H L  V R AD + V+  G++
Sbjct: 190 HSLQEVLRLADRVVVLEDGRV 210

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C

 Score =  108 bits (270), Expect = 1e-26
 Identities = 67/218 (30%), Positives = 116/218 (53%), Gaps = 5/218 (2%)

Query: 259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG 318
           G + +KD+   Y +  G  +    S SI  G    L+G++GSGKST++S   R  + + G
Sbjct: 1   GQMTVKDLTAKY-TEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-G 58

Query: 319 EVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNIN-YGKDGASIAEIMAAAELAN 377
           ++ IDGV+     L+  R   G++ Q+  +F+ + + N++ YGK   S  EI   AE   
Sbjct: 59  DIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGK--WSDEEIWKVAEEVG 116

Query: 378 AAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERV 437
               I+  P  LD ++ + G  LS G KQ + +AR++L   +ILLLDE ++ LD  + +V
Sbjct: 117 LKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQV 176

Query: 438 VQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKL 475
           +++ L +   + T ++  HR+  +       VI + K+
Sbjct: 177 IRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKV 214

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275

>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  107 bits (268), Expect = 2e-26
 Identities = 79/231 (34%), Positives = 118/231 (51%), Gaps = 23/231 (9%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----P 315
           +E K++   Y  +   Q  N  +L I      AL+G SG GKST +  + R  D      
Sbjct: 5   MESKNLNLWYGEK---QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVK 61

Query: 316 QAGEVLIDGVNL--KEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG------KDGASIA 367
             GEVL+DG N+  K+  +  +R ++G+V Q+P  F  SI DN+ YG      KD   + 
Sbjct: 62  IEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELD 121

Query: 368 EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 427
           +I+  A L  AA + D +   L     +   +LSGGQ+QR+ IAR I   P ++L+DE T
Sbjct: 122 KIVEWA-LKKAALW-DEVKDDLK----KSALKLSGGQQQRLCIARTIAVKPDVILMDEPT 175

Query: 428 SALDAESERVVQEALDKIMINRTTVIVAHRLSTV-RNADLIAVIHQGKLVE 477
           SALD  S   +++ + ++    T VIV H +    R +D  A    G L+E
Sbjct: 176 SALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIE 226

Length = 251

>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  106 bits (267), Expect = 2e-26
 Identities = 75/233 (32%), Positives = 114/233 (48%), Gaps = 27/233 (11%)

Query: 261 IELKDI--YFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD---- 314
           IE++++  YF         I    +L IP  +  AL+G SG GKST I  + R  D    
Sbjct: 4   IEVENLNTYFD-----DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPG 58

Query: 315 -PQAGEVLIDGVNLKEFQLKWI--RGKIGLVSQEPVLFTSSIKDNINYG------KDGAS 365
               G + +DGV++ +  +  +  R K+G+V Q+P  F  SI DN+ YG       D   
Sbjct: 59  FRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDF 118

Query: 366 IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 425
           I E +   E   AA   D +   LD    +    LSGGQ+QR+ IAR I   P ++L+DE
Sbjct: 119 IEERVE--ESLKAAALWDEVKDKLD----KSALGLSGGQQQRLCIARTIAVSPEVILMDE 172

Query: 426 ATSALDAESERVVQEALDKIMINRTTVIVAHRL-STVRNADLIAVIHQGKLVE 477
             SALD  S   +++ + K+  + T VIV H +    R +   +    G+++E
Sbjct: 173 PCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIE 225

Length = 250

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score =  106 bits (266), Expect = 3e-26
 Identities = 65/226 (28%), Positives = 125/226 (55%), Gaps = 12/226 (5%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           +E++++   YP+  G+Q     +L+I  G   A++G SG+GKST++  I R  +P +G +
Sbjct: 2   LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59

Query: 321 LIDG---VNLKEFQLKWIRGKIGLVSQEPVLFT-SSIKDNINYGKDGAS--IAEIMAAAE 374
           L++G     L+  +L+ +R +IG++ Q   L    ++ +N+ +G+ G       ++    
Sbjct: 60  LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119

Query: 375 LANAAKFIDSLPQ-GLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 433
             +  + + +L + GL     +   QLSGGQ+QR+AIARA+ + P ++L DE  ++LD +
Sbjct: 120 EEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPK 179

Query: 434 SERVVQEALDKIMINR--TTVIVAHRLSTVRN-ADLIAVIHQGKLV 476
           + + V + L +I      T +I  H++   +  AD I  +  G++V
Sbjct: 180 TSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIV 225

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score =  102 bits (256), Expect = 4e-26
 Identities = 48/129 (37%), Positives = 71/129 (55%), Gaps = 13/129 (10%)

Query: 303 STVISLIERFYDPQAGEVLIDGVNLKEF-QLKWIRGKIGLVSQEPVLFTS-SIKDNINYG 360
           ST++ LI     P +G +L+DG +       K +R +IG+V Q+P LF   ++++N+ +G
Sbjct: 1   STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60

Query: 361 KD-GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR 419
                + A    A E      F+D  P             LSGGQKQR+AIARA+LK P+
Sbjct: 61  LRDKEADARAEEALERVGLPDFLDREP----------VGTLSGGQKQRVAIARALLKKPK 110

Query: 420 ILLLDEATS 428
           +LLLDE T+
Sbjct: 111 LLLLDEPTA 119

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  107 bits (268), Expect = 4e-26
 Identities = 69/229 (30%), Positives = 112/229 (48%), Gaps = 25/229 (10%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE- 319
           +E K + F+YP    +   N  S SIP G+  AL+G +GSGKST+  LI     P     
Sbjct: 6   VEFKHVSFTYPDSK-KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64

Query: 320 --VLIDGVNLKEFQLKWIRGKIGLVSQEP--VLFTSSIKDNINYGKDGASIAE------I 369
             + +DG+ L    +  IR K+G+V Q P      +++ D++ +G +  ++        +
Sbjct: 65  SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIV 124

Query: 370 MAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 429
                      +IDS P             LSGGQKQR+AIA  +  +P+I++LDE+TS 
Sbjct: 125 RDVLADVGMLDYIDSEPA-----------NLSGGQKQRVAIAGILAVEPKIIILDESTSM 173

Query: 430 LDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRNADLIAVIHQGKLV 476
           LD   +  + + + K+    N T + + H +     AD + V+  GKL+
Sbjct: 174 LDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLL 222

Length = 282

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score =  104 bits (261), Expect = 1e-25
 Identities = 67/208 (32%), Positives = 105/208 (50%), Gaps = 14/208 (6%)

Query: 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLK---EFQLK 333
           Q+    +L I  G    L G SGSGK+T+++LI      Q G + + G  L    E +L 
Sbjct: 19  QVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELV 78

Query: 334 WIRGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTM 392
            +R  IG + Q   L    + + N+    +      +        A   ++++  GL   
Sbjct: 79  QLRRNIGYIFQAHNLLGFLTARQNVQMALE--LQPNLSYQEARERARAMLEAV--GLGDH 134

Query: 393 VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINR--T 450
           +  +   LSGGQKQR+AIARA++  P+++L DE T+ALD++S R V E + K+   +  T
Sbjct: 135 LDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCT 194

Query: 451 TVIVAH--RLSTVRNADLIAVIHQGKLV 476
            +IV H  R+  V  AD I  +  GKL+
Sbjct: 195 ILIVTHDNRILDV--ADRIVHMEDGKLL 220

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score =  102 bits (255), Expect = 4e-25
 Identities = 73/226 (32%), Positives = 117/226 (51%), Gaps = 30/226 (13%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           + L  + + Y   P E     F L++  G   A++G SG+GKST+++LI  F +P +G +
Sbjct: 1   LALDKVRYEYEHLPME-----FDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSI 55

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYG-KDGASI-----AEIMAAA 373
            ++  +     L   +  + ++ QE  LF   +++ NI  G   G  +      +++ AA
Sbjct: 56  KVNDQS--HTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAA 113

Query: 374 ELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 433
           +    A ++D LP+           QLSGGQ+QR+A+AR +++   ILLLDE  SALD  
Sbjct: 114 QQVGIADYLDRLPE-----------QLSGGQRQRVALARCLVRPNPILLLDEPFSALD-P 161

Query: 434 SERVVQEALDKIMIN---RTTVIVAHRLS-TVRNADLIAVIHQGKL 475
             R    AL K + +   RT ++V H LS     A  IAV+ QGK+
Sbjct: 162 LLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKI 207

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score =  105 bits (263), Expect = 4e-25
 Identities = 64/194 (32%), Positives = 101/194 (52%), Gaps = 23/194 (11%)

Query: 294 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-S 352
           L+G SG GK+T++ L+  F  P +G +++DG ++       +R  I +V Q   LF   +
Sbjct: 1   LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP-PHLRH-INMVFQSYALFPHMT 58

Query: 353 IKDNINYG--KDGASIAEI----MAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQ 406
           +++N+ +G        AEI    + A  L    +F D  P            QLSGGQ+Q
Sbjct: 59  VEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKP-----------HQLSGGQQQ 107

Query: 407 RIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLS-TVRN 463
           R+A+ARA++  P+ILLLDE  SALD +    +Q  L  I   +  T V V H     +  
Sbjct: 108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTM 167

Query: 464 ADLIAVIHQGKLVE 477
           +D IA++ +GK+ +
Sbjct: 168 SDRIAIMRKGKIAQ 181

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score =  109 bits (273), Expect = 4e-25
 Identities = 66/201 (32%), Positives = 112/201 (55%), Gaps = 2/201 (0%)

Query: 278  IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRG 337
            +  G S  I       +VG++GSGKST++    R  +   GE+ ++G  +  + L+ +R 
Sbjct: 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRR 1384

Query: 338  KIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHG 397
            +  ++ Q+PVLF  +++ N++   + AS AE+ AA EL    + + S  +G+D+ V E G
Sbjct: 1385 QFSMIPQDPVLFDGTVRQNVDPFLE-ASSAEVWAALELVGLRERVASESEGIDSRVLEGG 1443

Query: 398  TQLSGGQKQRIAIARAILK-DPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAH 456
            +  S GQ+Q + +ARA+LK     +L+DEAT+ +D   +R +Q  +       T + +AH
Sbjct: 1444 SNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAH 1503

Query: 457  RLSTVRNADLIAVIHQGKLVE 477
            RL TV   D I V+  G + E
Sbjct: 1504 RLHTVAQYDKIIVMDHGAVAE 1524

Length = 1560

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  103 bits (258), Expect = 5e-25
 Identities = 56/178 (31%), Positives = 92/178 (51%), Gaps = 12/178 (6%)

Query: 266 IYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGV 325
           +  SY  +P        SL+I SG    ++G SG GK+T+++LI  F  P  G + ++G 
Sbjct: 9   LSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGR 67

Query: 326 NLKEFQLKWIRGKIGLVSQEPVLFT-SSIKDNINYGKDGASIAEIMAAAELANAAKFIDS 384
                +++    + G+V Q   L    ++ DN+ +G     +  I  A     A + +  
Sbjct: 68  -----RIEGPGAERGVVFQNEALLPWLNVIDNVAFG---LQLRGIEKAQRREIAHQMLAL 119

Query: 385 LPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEAL 442
           +  GL+    ++  QLSGG +QR+ IARA+  +P++LLLDE   ALDA +   +QE L
Sbjct: 120 V--GLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELL 175

Length = 259

>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  104 bits (260), Expect = 7e-25
 Identities = 68/228 (29%), Positives = 115/228 (50%), Gaps = 31/228 (13%)

Query: 276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG------------EVLID 323
           +    G S+ IP  +  AL+G SG GKST +  + R  D                ++  D
Sbjct: 58  DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQD 117

Query: 324 GVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGK------DGASIAEIMAAAELAN 377
           GVNL E     +R ++G+V Q P  F  SI++NI+YG       +   +A ++   +   
Sbjct: 118 GVNLVE-----LRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDA 172

Query: 378 AAKFID-SLPQG-----LDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 431
             + ++ SL Q      ++  + ++   LSGGQ+QR+ IAR +  DP ++L+DE  SALD
Sbjct: 173 EDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALD 232

Query: 432 AESERVVQEALDKIMINRTTVIVAHRL-STVRNADLIAV-IHQGKLVE 477
             +   +++ ++++    T V+V H +    R +D  AV +  G+LVE
Sbjct: 233 PIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVE 280

Length = 305

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score =  101 bits (253), Expect = 8e-25
 Identities = 69/229 (30%), Positives = 112/229 (48%), Gaps = 34/229 (14%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           + L  I FSY    GEQ  + F L+   G   A+VG SGSGKST+++LI  F  PQ+G V
Sbjct: 1   VRLDKIRFSY----GEQPMH-FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYG---------KDGASIAEIM 370
           LI+GV++           + ++ QE  LF   +++ N+  G         +D  +I   +
Sbjct: 56  LINGVDVTAAPPA--DRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVAL 113

Query: 371 AAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 430
           A   LA   K    LP            +LSGG++QR+A+AR +++D  +LLLDE  +AL
Sbjct: 114 ARVGLAGLEK---RLPG-----------ELSGGERQRVALARVLVRDKPVLLLDEPFAAL 159

Query: 431 DAESERVVQEALDKIMINR--TTVIVAHRLSTVRN-ADLIAVIHQGKLV 476
           D      + + +  +      T ++V H+    +  A  +  +  G++ 
Sbjct: 160 DPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIA 208

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  103 bits (259), Expect = 8e-25
 Identities = 76/230 (33%), Positives = 124/230 (53%), Gaps = 22/230 (9%)

Query: 261 IELKDIYFSY-PSRPGEQI-FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG 318
           I+++++   Y    P E+   +  ++ I  G    L+G +GSGKST+I  +     P +G
Sbjct: 3   IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62

Query: 319 EVLIDGVNL--KEFQLKWIRGKIGLVSQEP--VLFTSSIKDNINYGKD--GASIAEIMAA 372
           +++IDGV++  K+ +L  IR K+GLV Q P   LF  +I+ +I +G    G S  EI   
Sbjct: 63  KIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENR 122

Query: 373 AELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 432
            + A     +D      +    +   +LSGGQK+R+AIA  +  +P+IL+LDE T+ LD 
Sbjct: 123 VKRAMNIVGLD-----YEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDP 177

Query: 433 ESERVVQEALDKIM-----INRTTVIVAHRLSTV-RNADLIAVIHQGKLV 476
           +      E L+KI       N T ++V+H +  V + AD I V+++GK  
Sbjct: 178 KGR---DEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCE 224

Length = 287

>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  102 bits (256), Expect = 9e-25
 Identities = 67/231 (29%), Positives = 113/231 (48%), Gaps = 23/231 (9%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----P 315
           +  K++   Y  +         ++SIP     AL+G SG GKST++    R  D      
Sbjct: 7   LSTKNLNLWYGEK---HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR 63

Query: 316 QAGEVLIDGVNLKEFQLK--WIRGKIGLVSQEPVLFTSSIKDNINYG------KDGASIA 367
             G++L +G N+ +       +R KIG+V Q P  F  SI +N+ YG      K+  ++ 
Sbjct: 64  ITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLD 123

Query: 368 EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 427
            I+  + L  AA     L   +   + +    LSGGQ+QR+ IAR +  +P ++L+DE  
Sbjct: 124 TIVEKS-LKGAA-----LWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPC 177

Query: 428 SALDAESERVVQEALDKIMINRTTVIVAHRLS-TVRNADLIAVIHQGKLVE 477
           SALD  +   +++ ++ +    T +IV H +    R +D    ++ GKL+E
Sbjct: 178 SALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIE 228

Length = 253

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score =  105 bits (263), Expect = 9e-25
 Identities = 70/227 (30%), Positives = 115/227 (50%), Gaps = 32/227 (14%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           +EL+ I  S+    G+++ +   L+I +G    L+G SG GK+TV+ LI  F  P +G +
Sbjct: 15  VELRGISKSFD---GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI 71

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYG----KDGAS-IAE-IMAAA 373
           ++DG ++    +      +  V Q   LF   ++ +N+ +G    K  A+ I   +M A 
Sbjct: 72  MLDGQDIT--HVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEAL 129

Query: 374 ELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 433
            +    +F    P            QLSGGQ+QR+AIARA++  P++LLLDE+ SALD +
Sbjct: 130 RMVQLEEFAQRKPH-----------QLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178

Query: 434 SERVVQEALDKIM--INRTTVIVAH----RLSTVRNADLIAVIHQGK 474
             + +Q  L  +   +  T V V H     L+    +D I V+  G+
Sbjct: 179 LRKQMQNELKALQRKLGITFVFVTHDQEEALTM---SDRIVVMRDGR 222

Length = 375

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score =  107 bits (269), Expect = 1e-24
 Identities = 64/219 (29%), Positives = 115/219 (52%), Gaps = 14/219 (6%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           I +K+ YFS+ S+      +  +L +P G+  A+VG +G GK+++IS +     P++   
Sbjct: 615 ISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDAS 674

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAK 380
           ++            IRG +  V Q   +F ++++DNI +G           A ++     
Sbjct: 675 VV------------IRGTVAYVPQVSWIFNATVRDNILFGSPFDP-ERYERAIDVTALQH 721

Query: 381 FIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESER-VVQ 439
            +D LP G  T +GE G  +SGGQKQR+++ARA+  +  + + D+  SALDA   R V  
Sbjct: 722 DLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFD 781

Query: 440 EALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
           + +   +  +T V+V ++L  +   D I ++H+G + E+
Sbjct: 782 KCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEE 820

Length = 1622

>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional

 Score =  105 bits (262), Expect = 1e-24
 Identities = 76/204 (37%), Positives = 117/204 (57%), Gaps = 15/204 (7%)

Query: 283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEF---QLKWIR-GK 338
           SL+I  G    ++G SGSGKST++ L+ R  +P  G+VLIDGV++ +    +L+ +R  K
Sbjct: 48  SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107

Query: 339 IGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQ-GLDTMVGEH 396
           I +V Q   L    ++ DN  +G + A I     A E     K +D+L Q GL+     +
Sbjct: 108 IAMVFQSFALMPHMTVLDNTAFGMELAGIN----AEE--RREKALDALRQVGLENYAHSY 161

Query: 397 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIV 454
             +LSGG +QR+ +ARA+  +P ILL+DEA SALD      +Q+ L K+     RT V +
Sbjct: 162 PDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFI 221

Query: 455 AHRL-STVRNADLIAVIHQGKLVE 477
           +H L   +R  D IA++  G++V+
Sbjct: 222 SHDLDEAMRIGDRIAIMQNGEVVQ 245

Length = 400

>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  102 bits (256), Expect = 1e-24
 Identities = 80/222 (36%), Positives = 113/222 (50%), Gaps = 25/222 (11%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----P 315
           I L+++  SY +   E + N F   IP G   AL+G SG GKSTV+  + R  D      
Sbjct: 14  ISLQNVTISYGTF--EAVKNVF-CDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCS 70

Query: 316 QAGEVLIDGVNL--KEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASI------A 367
             G VL DG +L         +R +IG+V Q+P  F  SI +NI +G   A I       
Sbjct: 71  LKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFG---ARINGYTGDM 127

Query: 368 EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 427
           + +    L  AA + D     L+    E G  LSGGQ+QR+ IAR I  +P ++L+DE  
Sbjct: 128 DELVERSLRKAAVW-DECKDKLN----ESGYSLSGGQQQRLCIARTIAIEPEVILMDEPC 182

Query: 428 SALDAESERVVQEALDKIMINRTTVIVAHRL-STVRNADLIA 468
           SALD  S   ++E + ++  N T VIV H +   VR +D+ A
Sbjct: 183 SALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTA 224

Length = 269

>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C

 Score =  100 bits (249), Expect = 3e-24
 Identities = 68/220 (30%), Positives = 114/220 (51%), Gaps = 10/220 (4%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           +++ + YFS+    G    +  ++ IP+G    +VGQ G GKS+++  I        G+V
Sbjct: 1   VQVTNGYFSWG--SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKV 58

Query: 321 LIDGVNLKEFQLKWI----RGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELA 376
                N  E   +      R  +   +Q+P L  +++++NI +G    +     A  +  
Sbjct: 59  HWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDAC 117

Query: 377 NAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE-SE 435
           +    ID LP G  T +GE G  LSGGQ+QRI +ARA+ ++  I+ LD+  SALD   S+
Sbjct: 118 SLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSD 177

Query: 436 RVVQEALDKIMIN--RTTVIVAHRLSTVRNADLIAVIHQG 473
            ++QE + K + +  RT V+V H+L  + +AD I  +  G
Sbjct: 178 HLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217

The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score = 99.2 bits (248), Expect = 3e-24
 Identities = 58/225 (25%), Positives = 106/225 (47%), Gaps = 46/225 (20%)

Query: 261 IELKDIYFSYPSRPG---EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLI--ERFYDP 315
           +  +++  +  S P    +Q+    S     G   A++G SG+GKST+++ +   R    
Sbjct: 4   LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG 63

Query: 316 QAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLF-TSSIKDNINYGKDGASIAEIMAAAE 374
            +GEVLI+G  L     +  R  IG V Q+ +L  T ++++ + +            AA+
Sbjct: 64  VSGEVLINGRPLD---KRSFRKIIGYVPQDDILHPTLTVRETLMF------------AAK 108

Query: 375 LANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 434
           L           +G           LSGG+++R++IA  ++ +P +L LDE TS LD+ S
Sbjct: 109 L-----------RG-----------LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSS 146

Query: 435 ERVVQEALDKIM-INRTTVIVAHRLST--VRNADLIAVIHQGKLV 476
              V   L ++    RT +   H+ S+      D + ++ QG+++
Sbjct: 147 ALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVI 191

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  100 bits (251), Expect = 3e-24
 Identities = 73/232 (31%), Positives = 124/232 (53%), Gaps = 19/232 (8%)

Query: 258 RGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVIS----LIERFY 313
              IE++D+  S+      ++ +G +L IP  T  AL+G SGSGKST++     LIE + 
Sbjct: 1   MNKIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYP 57

Query: 314 DPQ-AGEVLIDGVNLKEFQLKWIRGKIGLVSQEP-VLFTSSIKDNINYG----KDGASIA 367
           + + +GEV +DG ++ +  +  +R ++ +V Q P  +   SI +N+  G    +   S  
Sbjct: 58  EARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKK 117

Query: 368 EIMAAAELA-NAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 426
           E+      A   A+  D +   LD   G    +LSGGQ+QR+ IARA+   P +LL DE 
Sbjct: 118 ELQERVRWALEKAQLWDEVKDRLDAPAG----KLSGGQQQRLCIARALAFQPEVLLADEP 173

Query: 427 TSALDAESERVVQEALDKIMINRTTVIVAH-RLSTVRNADLIAVIHQGKLVE 477
           T+ LD E+   ++    ++  + T V+V H      R +D +A +++G++VE
Sbjct: 174 TANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVE 225

Length = 250

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score =  104 bits (263), Expect = 4e-24
 Identities = 72/229 (31%), Positives = 118/229 (51%), Gaps = 26/229 (11%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           +EL+ I  S+    G +  +G SL++  G   AL+G++G+GKST++ ++   Y P +GE+
Sbjct: 9   LELRGISKSFG---GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI 65

Query: 321 LIDGVNLKEFQLKWIRGK----IGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAEL 375
           LIDG   K       R      I  V QE  L  + S+ +NI  G++      ++    +
Sbjct: 66  LIDG---KPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAM 122

Query: 376 -ANAAKFIDSL--PQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD- 431
              A + +  L      DT+VG+    LS  Q+Q + IARA+  D R+L+LDE T+AL  
Sbjct: 123 RRRARELLARLGLDIDPDTLVGD----LSIAQRQMVEIARALSFDARVLILDEPTAALTV 178

Query: 432 AESER---VVQEALDKIMINRTTVIVAHRLSTV-RNADLIAVIHQGKLV 476
            E+ER   +++    +       + ++HRL  V   AD I V+  G++V
Sbjct: 179 KETERLFDLIRRLKAQ---GVAIIYISHRLDEVFEIADRITVLRDGRVV 224

Length = 500

>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  100 bits (250), Expect = 4e-24
 Identities = 66/225 (29%), Positives = 109/225 (48%), Gaps = 11/225 (4%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG-- 318
           I+++ + F Y      Q+    ++  P     A++G SG GKST++  + R  D  +G  
Sbjct: 5   IKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGAR 61

Query: 319 ---EVLIDGVNLKEFQLKWI--RGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAA 373
               VL+D  N+    L  +  R ++G+V Q+P  F  SI DN+ +G             
Sbjct: 62  LEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLD 121

Query: 374 ELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 433
           E+   +    +L   +   + + G  LSGGQ+QR+ IAR +  +P ++L+DE  SALD  
Sbjct: 122 EVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPV 181

Query: 434 SERVVQEALDKIMINRTTVIVAHRL-STVRNADLIAVIHQGKLVE 477
           S   ++E + ++  N T  IV H +    R +D    +  G LVE
Sbjct: 182 STMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVE 226

Length = 251

>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  100 bits (250), Expect = 4e-24
 Identities = 75/230 (32%), Positives = 115/230 (50%), Gaps = 21/230 (9%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----P 315
           I  KD++ SY +    +  +G SL        AL+G SG GKST +  + R  D      
Sbjct: 5   ISAKDVHLSYGNY---EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIK 61

Query: 316 QAGEVLIDGVNL--KEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAA 373
             GE+  +G N+   +  L  +R ++G+V Q+P  F  S+ DN+ YG   A + +     
Sbjct: 62  ITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKD----K 117

Query: 374 ELANAAKFIDSLPQG-----LDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 428
           EL +  +  +SL Q          +  +    SGGQ+QRI IARA+   P+++LLDE TS
Sbjct: 118 ELIDQ-RVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTS 176

Query: 429 ALDAESERVVQEALDKIMINRTTVIVAHRLSTV-RNADLIAVIHQGKLVE 477
           ALD  S   ++E L ++    T ++V H L    R +D  A +  G L+E
Sbjct: 177 ALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIE 226

Length = 251

>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  100 bits (251), Expect = 5e-24
 Identities = 69/224 (30%), Positives = 115/224 (51%), Gaps = 13/224 (5%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           +E++++ F Y         NG S SI  G   +++GQ+GSGKST   LI+  ++   G+V
Sbjct: 5   LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEP--VLFTSSIKDNINYGKDGASIAEIMAAAELANA 378
            IDG  L    +  +R KIG+V Q P      ++++D++ +G +   I        +  A
Sbjct: 65  KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEA 124

Query: 379 AKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD----AES 434
              ++ L             +LSGGQKQR+A+A  I   P I++LDE+TS LD     E 
Sbjct: 125 LLAVNML-----DFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEI 179

Query: 435 ERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
            RV+ E  +K  +  T + + H L    ++D I V+  G+++++
Sbjct: 180 MRVIHEIKEKYQL--TVLSITHDLDEAASSDRILVMKAGEIIKE 221

Length = 277

>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional

 Score =  100 bits (251), Expect = 5e-24
 Identities = 79/220 (35%), Positives = 112/220 (50%), Gaps = 35/220 (15%)

Query: 283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYD--PQA---GEVLIDGVNL--KEFQLKWI 335
           +L+I   +  A +G SG GKSTV+  + R ++  P A   GEVL+DG +L         +
Sbjct: 24  NLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV 83

Query: 336 RGKIGLVSQEPVLF-TSSIKDNINYG---------KDGASIAE-IMAAAELANAAKFIDS 384
           R  IG+V Q P  F T SI+DN+  G         KD   + E  +  A L N  K  D 
Sbjct: 84  RRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK--DR 141

Query: 385 LPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDK 444
           L         + G  LSGGQ+QR+ IARAI  +P +LL+DE  SALD  S   +++ +++
Sbjct: 142 L--------DKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINE 193

Query: 445 IMINRTTVIVAHRL-STVRNAD------LIAVIHQGKLVE 477
           +  + T VIV H +    R +D      L A    G+LVE
Sbjct: 194 LKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233

Length = 258

>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  100 bits (250), Expect = 6e-24
 Identities = 71/213 (33%), Positives = 106/213 (49%), Gaps = 15/213 (7%)

Query: 276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGVNLKEF 330
           +Q     S+ IP  +  AL+G SG GKST I  + R  D        G+V I+G ++ E 
Sbjct: 25  KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEP 84

Query: 331 QLKWI--RGKIGLVSQEPVLFTSSIKDNINYGK--DGASIAEIMAAAELA-NAAKFIDSL 385
            +  +  R  +G+V Q+P  F  SI DN+ YG    GA+  ++    E A  +A   D  
Sbjct: 85  DVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET 144

Query: 386 PQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKI 445
              L +        LSGGQ+QR+ IAR +   P+I+L DE TSALD  S   +++ +  +
Sbjct: 145 SDRLKSP----ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL 200

Query: 446 MINRTTVIVAHRL-STVRNADLIAVIHQGKLVE 477
             + T VIV H +    R +D       G+L+E
Sbjct: 201 KKDYTIVIVTHNMQQAARISDYTGFFLMGELIE 233

Length = 258

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score = 99.8 bits (249), Expect = 7e-24
 Identities = 73/223 (32%), Positives = 112/223 (50%), Gaps = 31/223 (13%)

Query: 275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG-----EVLIDG---VN 326
           G+ + +G  L +  G   A++G SGSGK+T++  I     P+AG     ++ ID    ++
Sbjct: 15  GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLS 74

Query: 327 LKEFQLKWIRGKIGLVSQEPVLFT-SSIKDNINYG-----KDGASIAEIMAAAELANAAK 380
            ++  ++ +R  +G V Q   LF   ++ +NI  G      +    A   A   LA    
Sbjct: 75  QQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKV-- 132

Query: 381 FIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQE 440
                  GL      +  +LSGGQ+QR+AIARA+   P ++L DE TSALD E   +V E
Sbjct: 133 -------GLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPE---LVGE 182

Query: 441 ALDKIMI----NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVEK 478
            L+ I       RT VIV H +S  R+ AD    + QG++VE+
Sbjct: 183 VLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQ 225

Length = 250

>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional

 Score =  100 bits (250), Expect = 7e-24
 Identities = 68/208 (32%), Positives = 104/208 (50%), Gaps = 20/208 (9%)

Query: 284 LSIPSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGVNL--KEFQLKWIR 336
           L I      A++G SG GKST I  + R  +        G++L    N+  K + ++ +R
Sbjct: 45  LDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELR 104

Query: 337 GKIGLVSQEPVLFTSSIKDNINYG------KDGASIAEIMAAAELANAAKFIDSLPQGLD 390
             +G+V Q+P  F  SI DN+ YG      KD  ++ EI     L  AA + D L   L 
Sbjct: 105 TNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEI-VEKSLRGAAIW-DELKDRLH 162

Query: 391 TMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRT 450
                +   LSGGQ+QR+ IAR +  +P ++L+DE TSALD  S   V+E + ++  + +
Sbjct: 163 D----NAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYS 218

Query: 451 TVIVAHRL-STVRNADLIAVIHQGKLVE 477
            +IV H +    R +D  A    G + E
Sbjct: 219 IIIVTHNMQQAARISDKTAFFLNGYVNE 246

Length = 271

>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  101 bits (253), Expect = 8e-24
 Identities = 72/229 (31%), Positives = 117/229 (51%), Gaps = 19/229 (8%)

Query: 262 ELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----PQ 316
           E+++  F Y +R  + + +  +L I      A +G SG GKST +  + +  D       
Sbjct: 82  EIRNFNFWYMNRT-KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSH 140

Query: 317 AGEVLIDGVNLKEFQLKWI--RGKIGLVSQEPVLFTSSIKDNINYGK-----DGASIAEI 369
            GE+   G N +  ++  +  R +IG+V Q+P  F  SI DN+ YG      +   I E 
Sbjct: 141 EGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEK 200

Query: 370 MAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 429
           +    L +AA + D +   LD    + G  LSGGQ+QR+ IARAI  +P +LL+DE TSA
Sbjct: 201 IVEKSLKSAALW-DEVKDDLD----KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSA 255

Query: 430 LDAESERVVQEALDKIMINRTTVIVAHRLSTV-RNADLIAVIHQGKLVE 477
           LD  +   ++E + ++    + +IV H ++   R +D     +QG + E
Sbjct: 256 LDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEE 304

Length = 329

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 97.9 bits (244), Expect = 8e-24
 Identities = 60/197 (30%), Positives = 97/197 (49%), Gaps = 25/197 (12%)

Query: 270 YPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNL-- 327
           YP  P  ++  G + +   G   AL+G +G+GKST++  +     PQ+G VLIDG  L  
Sbjct: 1   YPGGP--EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58

Query: 328 -KEFQLKWIRGKIGLVSQEP--VLFTSSIKDNINYG--KDGASIAEIMA----AAELANA 378
            ++  L+  R ++GLV Q+P   LF + +  ++ +G    G S AE+      A     A
Sbjct: 59  SRKGLLER-RQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGA 117

Query: 379 AKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVV 438
           +   +                LSGG+K+R+AIA A+   P +LLLDE T+ LD      +
Sbjct: 118 SGLRERPTH-----------CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQM 166

Query: 439 QEALDKIMINRTTVIVA 455
              L ++     TV+++
Sbjct: 167 LAILRRLRAEGMTVVIS 183

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 99.4 bits (248), Expect = 1e-23
 Identities = 74/240 (30%), Positives = 125/240 (52%), Gaps = 37/240 (15%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           +E++D++  Y      ++  G SL   +G   +++G SGSGKST +  I     P AG +
Sbjct: 7   LEVEDLHKRYGEH---EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSI 63

Query: 321 LIDGVNLK-------------EFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYGKD---G 363
            ++G  ++             + QL+ +R ++G+V Q   L++  ++ +N+        G
Sbjct: 64  RVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLG 123

Query: 364 ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLL 423
            S AE +  AE     K++  +  G+      +   LSGGQ+QR+AIARA+  +P ++L 
Sbjct: 124 VSKAEAIERAE-----KYLAKV--GIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLF 176

Query: 424 DEATSALDAESERVVQEALDKIMIN-----RTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477
           DE TSALD E   +V E L K+M +     RT V+V H +   R+ +  +  +HQGK+ E
Sbjct: 177 DEPTSALDPE---LVGEVL-KVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE 232

Length = 256

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score = 99.0 bits (248), Expect = 1e-23
 Identities = 63/214 (29%), Positives = 102/214 (47%), Gaps = 25/214 (11%)

Query: 280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVN---LKEFQLKWIR 336
           +  S S+  G    L+G +G+GK+T+ +LI  F  P +G VL DG +   L   ++   R
Sbjct: 17  DDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEI--AR 74

Query: 337 GKIGLVSQEPVLFTS-SIKDNI----------NYGKDGASIAEIMAAAELANAAKFIDSL 385
             IG   Q P LF   ++ +N+                A   E  A        + +  L
Sbjct: 75  LGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVG-L 133

Query: 386 PQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-DAESERVVQEALDK 444
               D   GE    LS GQ++R+ IARA+  DP++LLLDE  + L   E+E +  E + +
Sbjct: 134 ADLADRPAGE----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELA-ELIRE 188

Query: 445 I-MINRTTVIVAHRLSTVRN-ADLIAVIHQGKLV 476
           +     T ++V H +  V + AD + V+ QG+++
Sbjct: 189 LRERGITVLLVEHDMDVVMSLADRVTVLDQGRVI 222

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 99.1 bits (247), Expect = 1e-23
 Identities = 69/221 (31%), Positives = 111/221 (50%), Gaps = 27/221 (12%)

Query: 278 IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNL---------- 327
           + +G + S+ +G   AL+G SGSGKST++ ++        G++ ++G  L          
Sbjct: 15  VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74

Query: 328 ---KEFQLKWIRGKIGLVSQEPVLFT-SSIKDNINYGKDGASIAEIMAAAELANAAKFID 383
               E  L+ +R KIG+V Q   LF   ++ DN+        +  +  A     A + +D
Sbjct: 75  VPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAP--VLVLGMARAEAEKRAMELLD 132

Query: 384 SLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALD 443
            +  GL         QLSGGQ+QR+AIARA+   P+++L DE TSALD E   +V E L+
Sbjct: 133 MV--GLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPE---LVGEVLN 187

Query: 444 KIM-----INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVEK 478
            I       + T ++V H +   R  AD +    +G++VE+
Sbjct: 188 VIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQ 228

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 98.9 bits (246), Expect = 2e-23
 Identities = 75/215 (34%), Positives = 113/215 (52%), Gaps = 17/215 (7%)

Query: 276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD--PQA---GEVLIDGVNLKEF 330
           +Q     +L +  GT  AL+G SG GK+T +  I R +D  P A   G +L+DG ++   
Sbjct: 17  KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGP 76

Query: 331 QLKWI--RGKIGLVSQEPVLF-TSSIKDNINYGKDGASIAE---IMAAAELA-NAAKFID 383
           ++  +  R ++G+V Q+P  F T S+ DN+  G   A I +   +M  AE +   A   D
Sbjct: 77  RVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWD 136

Query: 384 SLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALD 443
            +   L T      T LSGGQ+QR+ IARA+  +P ILL+DE TSALD  S   +++ + 
Sbjct: 137 EVKDRLKT----PATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMT 192

Query: 444 KIMINRTTVIVAHRL-STVRNADLIAVIHQGKLVE 477
            +    T +IV H +    R +D  +    G LVE
Sbjct: 193 DLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVE 227

Length = 252

>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 99.5 bits (248), Expect = 2e-23
 Identities = 63/212 (29%), Positives = 108/212 (50%), Gaps = 27/212 (12%)

Query: 283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNL----KEFQLKWIRGK 338
           +     G   A+VGQ+GSGKST+I  I     P  G V +D + +    K+  ++ +R +
Sbjct: 27  NTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKR 86

Query: 339 IGLVSQ--EPVLFTSSIKDNINYGKD--GASIAEIMAAA-----ELANAAKFIDSLPQGL 389
           IG+V Q  E  LF  +++  I +G      ++ E+   A     +L  +   +   P   
Sbjct: 87  IGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSP--- 143

Query: 390 DTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI-- 447
                    Q+SGGQ ++IAI   +  +P I++LDE T+ LD +S+R V   L  +    
Sbjct: 144 --------FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDE 195

Query: 448 NRTTVIVAHRLSTV-RNADLIAVIHQGKLVEK 478
           N+T ++V+H ++ V R AD + V+ +G +V +
Sbjct: 196 NKTIILVSHDMNEVARYADEVIVMKEGSIVSQ 227

Length = 286

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 98.2 bits (245), Expect = 2e-23
 Identities = 71/214 (33%), Positives = 114/214 (53%), Gaps = 25/214 (11%)

Query: 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG--VNLKEFQLKW 334
           Q+ +   L+I  G    ++G SGSGKST++  I +  +  +G++++DG  VN  +   + 
Sbjct: 15  QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERL 74

Query: 335 IRGKIGLVSQEPVLFTS-SIKDNINYGK---DGASIAEIMAAAELANA--AKFIDSLPQG 388
           IR + G+V Q+  LF   +  +N+ +G     GAS  E   A + A    AK       G
Sbjct: 75  IRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEE---AEKQARELLAKV------G 125

Query: 389 LDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE----RVVQEALDK 444
           L      + ++LSGGQ+QR+AIARA+   P+++L DE TSALD E      +V+Q+  ++
Sbjct: 126 LAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEE 185

Query: 445 IMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477
            M   T VIV H +      A  +  I +G++ E
Sbjct: 186 GM---TMVIVTHEIGFAEKVASRLIFIDKGRIAE 216

Length = 240

>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 99.6 bits (248), Expect = 2e-23
 Identities = 74/209 (35%), Positives = 109/209 (52%), Gaps = 26/209 (12%)

Query: 286 IPSGTTAALVGQSGSGKSTVISLIERFYD--PQ---AGEVLIDGVNL-----KEFQLKWI 335
           I S    A++G SG GKST +  I R  D  P     G ++ DG ++      E  L   
Sbjct: 62  ILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLL--- 118

Query: 336 RGKIGLVSQEPVLFTSSIKDNINYG------KDGASIAEIMAAAELANAAKFIDSLPQGL 389
           R KIG+V Q+P  F  SI DNI YG       D   + EI+  + L  AA + D +   L
Sbjct: 119 RKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKS-LRKAALW-DEVSDRL 176

Query: 390 DTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINR 449
           D    ++   LSGGQ+QR+ +AR +  +P ILLLDE TSALD ++   +++ + ++  + 
Sbjct: 177 D----KNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSY 232

Query: 450 TTVIVAHRLSTV-RNADLIAVIHQGKLVE 477
           T +IV H +    R +D     ++G LVE
Sbjct: 233 TIMIVTHNMQQASRVSDYTMFFYEGVLVE 261

Length = 286

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score =  103 bits (258), Expect = 3e-23
 Identities = 62/198 (31%), Positives = 105/198 (53%), Gaps = 21/198 (10%)

Query: 283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLV 342
           S+S+P G    ++G +GSGKST++  +   ++   G V             W    I  V
Sbjct: 680 SVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV-------------WAERSIAYV 726

Query: 343 SQEPVLFTSSIKDNINY--GKDGASIAEIMAAAEL-ANAAKFIDSLPQGLDTMVGEHGTQ 399
            Q+  +  ++++ NI +   +D A +A+ +  ++L A+ A     L  GL+T +GE G  
Sbjct: 727 PQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLA----QLGGGLETEIGEKGVN 782

Query: 400 LSGGQKQRIAIARAILKDPRILLLDEATSALDAE-SERVVQEALDKIMINRTTVIVAHRL 458
           LSGGQK R+++ARA+  +  + LLD+  SALDA   ERVV+E     +  +T V+  H++
Sbjct: 783 LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQV 842

Query: 459 STVRNADLIAVIHQGKLV 476
             V  AD +  +  G++ 
Sbjct: 843 HVVPRADYVVALGDGRVE 860

Length = 1560

>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional

 Score = 99.7 bits (249), Expect = 3e-23
 Identities = 76/229 (33%), Positives = 114/229 (49%), Gaps = 54/229 (23%)

Query: 280 NGFSLSIPSGTTAALVGQSGSGKSTV---ISLIERFYDPQAGEVLIDGVNLKEF---QLK 333
           +G S ++  G T A+VG+SG GKST+   +++IE    P  GE+   G +L +      K
Sbjct: 32  DGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET---PTGGELYYQGQDLLKADPEAQK 88

Query: 334 WIRGKIGLVSQEPVLFTSSIKDNINYG------KDGASIAEIMA------AAELANAAKF 381
            +R KI +V Q P            YG      K G  + E +       AAE     K 
Sbjct: 89  LLRQKIQIVFQNP------------YGSLNPRKKVGQILEEPLLINTSLSAAE--RREKA 134

Query: 382 IDSLPQ-GLDTMVGEHGTQ----LSGGQKQRIAIARAILKDPRILLLDEATSALDAESER 436
           +  + + GL     EH  +     SGGQ+QRIAIARA++ DP +++ DE  SALD     
Sbjct: 135 LAMMAKVGLRP---EHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVS--- 188

Query: 437 VVQ-EALDKIM-----INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVEK 478
            VQ + L+ +M     +  + V ++H LS V + AD + V++ G+ VEK
Sbjct: 189 -VQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEK 236

Length = 327

>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 98.2 bits (244), Expect = 3e-23
 Identities = 66/208 (31%), Positives = 112/208 (53%), Gaps = 8/208 (3%)

Query: 278 IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERF---YDPQA---GEVLIDGVNLKEFQ 331
           I    ++ IP+ +   ++G SGSGKST++ ++ R    YD +    G+VL  G ++ +  
Sbjct: 25  ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84

Query: 332 LKWIRGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLD 390
              +R ++G+V Q+P  F   SI DNI Y      I E     ++         L + + 
Sbjct: 85  AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY 144

Query: 391 TMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRT 450
             +    +QLSGGQ+QR+ IARA+   P++LL+DE TS +D  + + +++ + ++     
Sbjct: 145 DRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIA 204

Query: 451 TVIVAHRLSTV-RNADLIAVIHQGKLVE 477
            VIV+H    V R AD +A ++ G+LVE
Sbjct: 205 IVIVSHNPQQVARVADYVAFLYNGELVE 232

Length = 257

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  100 bits (250), Expect = 4e-23
 Identities = 65/206 (31%), Positives = 104/206 (50%), Gaps = 31/206 (15%)

Query: 283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNL----KEFQLKWIRGK 338
           + ++P+    AL G SGSGK+++I++I     P  G + ++G  L    K   L   + +
Sbjct: 18  NFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRR 77

Query: 339 IGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHG 397
           IG V Q+  LF   +++ N+ YG         M  +  A   + +  L  G++ ++  + 
Sbjct: 78  IGYVFQDARLFPHYTVRGNLRYG---------MWKSMRAQFDQLVALL--GIEHLLDRYP 126

Query: 398 TQLSGGQKQRIAIARAILKDPRILLLDEATSALD----AES----ERVVQEALDKIMINR 449
             LSGG+KQR+AI RA+L  P +LL+DE  ++LD     E     ER+  E      IN 
Sbjct: 127 GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDE------INI 180

Query: 450 TTVIVAHRLSTV-RNADLIAVIHQGK 474
             + V+H L  V R AD + V+  GK
Sbjct: 181 PILYVSHSLDEVLRLADRVVVLENGK 206

Length = 352

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 95.2 bits (238), Expect = 4e-23
 Identities = 65/219 (29%), Positives = 105/219 (47%), Gaps = 61/219 (27%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           +EL+ I   +    G +  +G SLS+  G   AL+G++G+GKST++ ++   Y P +GE+
Sbjct: 1   LELRGITKRFG---GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAK 380
           L+DG                    + V F +S +D    G     IA             
Sbjct: 58  LVDG--------------------KEVSF-ASPRDARRAG-----IA------------- 78

Query: 381 FIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-DAESERVVQ 439
                      MV     QLS G++Q + IARA+ ++ R+L+LDE T+AL  AE ER+  
Sbjct: 79  -----------MV----YQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLF- 122

Query: 440 EALDKIMINRTTVI-VAHRLSTVRN-ADLIAVIHQGKLV 476
           + + ++      VI ++HRL  V   AD + V+  G++V
Sbjct: 123 KVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score =  102 bits (256), Expect = 5e-23
 Identities = 72/248 (29%), Positives = 125/248 (50%), Gaps = 34/248 (13%)

Query: 236 EAIERKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALV 295
           ++IER+ +     ++          I + +  F++ +R      NG + SIP G   A+V
Sbjct: 622 DSIERRTIKPGEGNS----------ITVHNATFTW-ARDLPPTLNGITFSIPEGALVAVV 670

Query: 296 GQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKD 355
           GQ G GKS+++S +    D   G V +             +G +  V Q+  +   S+++
Sbjct: 671 GQVGCGKSSLLSALLAEMDKVEGHVHM-------------KGSVAYVPQQAWIQNDSLRE 717

Query: 356 NINYGK---DGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR 412
           NI +GK   +      + A A L +    ++ LP G  T +GE G  LSGGQKQR+++AR
Sbjct: 718 NILFGKALNEKYYQQVLEACALLPD----LEILPSGDRTEIGEKGVNLSGGQKQRVSLAR 773

Query: 413 AILKDPRILLLDEATSALDAESERVVQEAL---DKIMINRTTVIVAHRLSTVRNADLIAV 469
           A+  +  I L D+  SA+DA   + + E +   + ++ N+T ++V H +S +   D+I V
Sbjct: 774 AVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIV 833

Query: 470 IHQGKLVE 477
           +  GK+ E
Sbjct: 834 MSGGKISE 841

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 96.5 bits (240), Expect = 6e-23
 Identities = 65/222 (29%), Positives = 116/222 (52%), Gaps = 16/222 (7%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           +ELK + +         I N  SLS+ +G   A+ G SG GKST++ ++     P +G +
Sbjct: 4   LELKQVGYLAGDAK---ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL 60

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAK 380
           L +G ++   + +  R ++   +Q P LF  +++DN+        I          + A 
Sbjct: 61  LFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNL--------IFPWQIRNRRPDRAA 112

Query: 381 FIDSLPQ-GLD-TMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVV 438
            +D L +  L  +++ ++ T+LSGG+KQRIA+ R +   P+ILLLDE TSALD  ++R +
Sbjct: 113 ALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNI 172

Query: 439 QEALDKIMI--NRTTVIVAH-RLSTVRNADLIAVIHQGKLVE 477
           +E + + +   N   + + H +   +R+AD +  +  G   E
Sbjct: 173 EEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214

Length = 223

>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 97.7 bits (243), Expect = 6e-23
 Identities = 74/209 (35%), Positives = 104/209 (49%), Gaps = 20/209 (9%)

Query: 283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYD--PQ---AGEVLIDGVNL--KEFQLKWI 335
           +LSIP     A++G SG GKST I  +       P     GE+  +G N+   +  L  +
Sbjct: 32  NLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVEL 91

Query: 336 RGKIGLVSQEPVLFTSSIKDNINYG------KDGASIAEIMAAAELANAAKFIDSLPQGL 389
           R  IG+V Q+   F  SI DN+ YG      K+   + EI    +        D +   L
Sbjct: 92  RKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEI--VEKSLKDVALWDEVKDRL 149

Query: 390 DTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINR 449
            T        LSGGQ+QR+ IARA+  +P +LL+DE TSALD  S R ++E + K+    
Sbjct: 150 HT----QALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKY 205

Query: 450 TTVIVAHRL-STVRNADLIAVIHQGKLVE 477
           T VIV H +    R +D  A  + G+LVE
Sbjct: 206 TIVIVTHNMQQAARVSDQTAFFYMGELVE 234

Length = 259

>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 97.2 bits (242), Expect = 6e-23
 Identities = 74/233 (31%), Positives = 114/233 (48%), Gaps = 25/233 (10%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD--PQA- 317
           IE  ++   Y S     +  G  L IP     AL+G SG GKST++    R  +   +A 
Sbjct: 5   IETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEAR 61

Query: 318 --GEVLIDGVNLKEFQLKWI--RGKIGLVSQEPVLFTS-SIKDNINYG-------KDGAS 365
             GEV + G N+    +  I  R ++G+V Q P  F   +I DN+  G       K    
Sbjct: 62  VEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKE 121

Query: 366 IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 425
           + E +  A L  AA     L   +   + ++ + LSGGQ+QR+ IARA+   P+ILL+DE
Sbjct: 122 LDERVEWA-LKKAA-----LWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDE 175

Query: 426 ATSALDAESERVVQEALDKIMINRTTVIVAHR-LSTVRNADLIAVIHQGKLVE 477
            T+ +D      ++E L ++    T V+V H      R +D +A ++ GKL+E
Sbjct: 176 PTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIE 228

Length = 253

>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 97.9 bits (244), Expect = 6e-23
 Identities = 74/229 (32%), Positives = 123/229 (53%), Gaps = 20/229 (8%)

Query: 261 IELKDIYFSYPS-RP--GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA 317
           I L+++ ++Y +  P  G  +F+  +L+I  G+  A +G +GSGKST++ L+   + P  
Sbjct: 3   INLQNVSYTYQAGTPFEGRALFD-VNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ 61

Query: 318 GEVLIDGVNL----KEFQLKWIRGKIGLVSQ--EPVLFTSSIKDNINYGKD--GASIAEI 369
           G V +D   +    K   +K IR K+GLV Q  E  LF  ++  ++ +G    G S  E 
Sbjct: 62  GSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEA 121

Query: 370 MAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 429
            A A    A   I       +++  ++  +LSGGQ +R+AIA  +  +P+IL+LDE T+ 
Sbjct: 122 EALAREKLALVGIS------ESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAG 175

Query: 430 LDAESERVVQEALDKIMIN-RTTVIVAHRLSTVRN-ADLIAVIHQGKLV 476
           LD +  + +     K+  +  T V+V H +  V N AD + V+ +GKLV
Sbjct: 176 LDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLV 224

Length = 280

>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional

 Score = 96.3 bits (240), Expect = 7e-23
 Identities = 59/213 (27%), Positives = 106/213 (49%), Gaps = 26/213 (12%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           ++L+++ +         I N  S S+ +G    + G SG GKST++ ++     P +G +
Sbjct: 8   LQLQNVGYLAGDAK---ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL 64

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAK 380
           L +G ++   + +  R ++   +Q P LF  ++ DN+        I       +  + A 
Sbjct: 65  LFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNL--------IFPWQIRNQQPDPAI 116

Query: 381 FIDSLPQ-GL-DTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVV 438
           F+D L +  L DT++ ++  +LSGG+KQRI++ R +   P++LLLDE TSALD  ++  V
Sbjct: 117 FLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNV 176

Query: 439 QEALDKIMINRTTVIVAHRLSTVRNADLIAVIH 471
            E             + HR    +N  ++ V H
Sbjct: 177 NE-------------IIHRYVREQNIAVLWVTH 196

Length = 225

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score = 96.0 bits (240), Expect = 8e-23
 Identities = 52/201 (25%), Positives = 97/201 (48%), Gaps = 12/201 (5%)

Query: 280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339
           +  SL++  G    L+G +G+GK+T + ++     P +G   I+G +++    K  R  +
Sbjct: 19  DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRT-DRKAARQSL 77

Query: 340 GLVSQEPVLFTS-SIKDNINY--GKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEH 396
           G   Q   LF   ++++++ +     G   +EI    EL      +  L    +      
Sbjct: 78  GYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELL---LRVLGLTDKANKRAR-- 132

Query: 397 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAH 456
              LSGG K+++++A A++  P +LLLDE TS LD  S R + + + ++   R+ ++  H
Sbjct: 133 --TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTH 190

Query: 457 RLSTVRN-ADLIAVIHQGKLV 476
            +       D IA++  GKL 
Sbjct: 191 SMDEAEALCDRIAIMSDGKLR 211

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD

 Score = 96.3 bits (240), Expect = 9e-23
 Identities = 70/217 (32%), Positives = 99/217 (45%), Gaps = 34/217 (15%)

Query: 281 GFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA----GEVLIDGVNLKEFQLKWIR 336
             +LS+  G   ALVG+SGSGKS     I     P      GE+L+DG  L       IR
Sbjct: 4   DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLS---IR 60

Query: 337 GK-IGLVSQEPV-----LFT------SSIKDNINYGKDG-ASIAEIMAAAELANAAKFID 383
           G+ I  + Q P      LFT       +++      K   A I E + A  L +  + + 
Sbjct: 61  GRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLK 120

Query: 384 SLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALD 443
             P            QLSGG  QR+ IA A+L +P  L+ DE T+ LD  ++  V + L 
Sbjct: 121 KYP-----------FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLR 169

Query: 444 KIMINRTTVI--VAHRLSTV-RNADLIAVIHQGKLVE 477
           ++     T I  + H L  V R AD +AV+  G++VE
Sbjct: 170 ELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVE 206

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230

>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 96.6 bits (240), Expect = 1e-22
 Identities = 65/208 (31%), Positives = 102/208 (49%), Gaps = 8/208 (3%)

Query: 279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGVNL--KEFQ 331
            N  ++ I   +  AL+G SG GKST +  + R  D        G V+ +G N+    F 
Sbjct: 23  LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82

Query: 332 LKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDT 391
           +  +R KIG+V Q P  F  SI DNI+YG       +     E+   +    +L   +  
Sbjct: 83  ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKD 142

Query: 392 MVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTT 451
            +  +   LSGGQ+QR+ IAR +  +P ++L+DE TSALD  S   ++E +  +  + T 
Sbjct: 143 KLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTI 202

Query: 452 VIVAHRLSTV-RNADLIAVIHQGKLVEK 478
           +IV H +    R +D  A    G + E+
Sbjct: 203 IIVTHNMQQAGRISDRTAFFLNGCIEEE 230

Length = 254

>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional

 Score = 98.6 bits (246), Expect = 1e-22
 Identities = 67/224 (29%), Positives = 116/224 (51%), Gaps = 18/224 (8%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           + LK+I   + S     + +  +L+I  GT   L+G SG GK+TV+ L+     P  G++
Sbjct: 7   VVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI 63

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYG--KDGASIAEIMAAAELAN 377
            IDG ++    ++  +  I +V Q   LF   S+ +N+ YG    G    E      +  
Sbjct: 64  FIDGEDVTHRSIQ--QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEER--KQRVKE 119

Query: 378 AAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERV 437
           A + +D     L      +  Q+SGGQ+QR+A+ARA++  P++LL DE  S LDA   R 
Sbjct: 120 ALELVD-----LAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRS 174

Query: 438 VQEALDKIM--INRTTVIVAHRLS-TVRNADLIAVIHQGKLVEK 478
           ++E + ++    N T++ V H  S     +D + V+++GK+++ 
Sbjct: 175 MREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQI 218

Length = 351

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 96.5 bits (241), Expect = 1e-22
 Identities = 57/219 (26%), Positives = 99/219 (45%), Gaps = 32/219 (14%)

Query: 280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVN---LKEFQLKWIR 336
           N  SL +  G    L+G +G+GK+T+ +LI  FY P +G V+  G +   L   ++   R
Sbjct: 21  NDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI--AR 78

Query: 337 GKIGLVSQEPVLFTS-SIKDNI--------------NYGKDGASIAEIMAAAELANAAKF 381
             I    Q   LF   ++ +N+                 +      E    A      +F
Sbjct: 79  LGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERAR--ELLEF 136

Query: 382 IDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA-ESERVVQE 440
           +     GL  +       LS GQ++R+ IARA+   P++LLLDE  + L+  E+E +  E
Sbjct: 137 V-----GLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELA-E 190

Query: 441 ALDKI--MINRTTVIVAHRLSTVRN-ADLIAVIHQGKLV 476
            + ++      T +++ H +  V   AD I V++ G+++
Sbjct: 191 LIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVI 229

Length = 250

>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 96.6 bits (240), Expect = 2e-22
 Identities = 74/218 (33%), Positives = 108/218 (49%), Gaps = 20/218 (9%)

Query: 275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD--PQ---AGEVLI--DGVNL 327
           G Q     ++ +      AL+G SG GKST +    R +D  P     GE+++  D VN+
Sbjct: 28  GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNI 87

Query: 328 --KEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG-----KDGASIAEIMAAAELANAAK 380
              E     +R +I +V Q+P  F  SI +N+ YG         SI E      L NAA 
Sbjct: 88  LSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAA- 146

Query: 381 FIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQE 440
               L   +   +G+    LSGGQ+QR+ IARA+  DP ILL DE TSALD  +   ++E
Sbjct: 147 ----LWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEE 202

Query: 441 ALDKIMINRTTVIVAHRL-STVRNADLIAVIHQGKLVE 477
            +  +    T +IV H +    R +D  A ++ G+L+E
Sbjct: 203 LISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIE 240

Length = 265

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score =  100 bits (250), Expect = 2e-22
 Identities = 76/233 (32%), Positives = 115/233 (49%), Gaps = 50/233 (21%)

Query: 277 QIFNGFSLSIPSGTTAALVGQSGSGKS-TVISLIERFYDPQA----GEVLIDGVNL---K 328
           +   G S  I +G T ALVG+SGSGKS T +S++     P A    G +L DG +L    
Sbjct: 24  EAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83

Query: 329 EFQLKWIRG-KIGLVSQEPVLFTSSIKDNIN-YGKDGASIAEIM--------AAAE---- 374
           E QL+ +RG KIG++ QEP   TS     +N     G  +AE++        AAA     
Sbjct: 84  ERQLRGVRGNKIGMIFQEP--MTS-----LNPLHTIGKQLAEVLRLHRGLSRAAARARAL 136

Query: 375 -------LANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 427
                  +    K +D+ P            +LSGGQ+QR+ IA A+  +P +L+ DE T
Sbjct: 137 ELLELVGIPEPEKRLDAYPH-----------ELSGGQRQRVMIAMALANEPDLLIADEPT 185

Query: 428 SALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477
           +ALD   +  + + L ++   +    + + H L  VR  AD + V+  G++VE
Sbjct: 186 TALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVE 238

Length = 534

>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 95.8 bits (238), Expect = 2e-22
 Identities = 66/204 (32%), Positives = 107/204 (52%), Gaps = 9/204 (4%)

Query: 283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYD--PQA---GEVLIDGVNL--KEFQLKWI 335
           S+  P  +  A++G SG GKSTV+  I R +D  P A   G++L+D  ++  +      I
Sbjct: 24  SMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSI 83

Query: 336 RGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVG 394
           R ++G+V Q+P  F + SI DN+  G           A E+  ++    +L   +   + 
Sbjct: 84  RRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLK 143

Query: 395 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIV 454
            +  +LSGGQ+QR+ IAR I   P ++L+DE  SALD  S   ++E ++++    T +IV
Sbjct: 144 SNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIV 203

Query: 455 AHRL-STVRNADLIAVIHQGKLVE 477
            H +    R +D  A  + G LVE
Sbjct: 204 THNMQQAARVSDYTAFFYMGDLVE 227

Length = 252

>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional

 Score = 96.0 bits (239), Expect = 2e-22
 Identities = 75/220 (34%), Positives = 101/220 (45%), Gaps = 35/220 (15%)

Query: 283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYD--PQA---GEVLIDGVNL--KEFQLKWI 335
            L IP     A +G SG GKST++    R  D  P     G+V   G NL   +     +
Sbjct: 30  WLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEV 89

Query: 336 RGKIGLVSQEPVLFTSSIKDNINYGK-------DGASIAE-IMAAAELANAAKFIDSLPQ 387
           R +IG+V Q+P  F  SI DNI YG        D   + E  +  A L +  K  D L Q
Sbjct: 90  RRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK--DKLKQ 147

Query: 388 GLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI 447
                    G  LSGGQ+QR+ IARAI   P ++L+DE  SALD  S   ++E + ++  
Sbjct: 148 S--------GLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE 199

Query: 448 NRTTVIVAHRLSTV-RNADLIAV---------IHQGKLVE 477
             T +IV H +    R +D+ A             G LVE
Sbjct: 200 QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239

Length = 264

>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional

 Score = 95.6 bits (238), Expect = 2e-22
 Identities = 72/213 (33%), Positives = 106/213 (49%), Gaps = 22/213 (10%)

Query: 280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD--PQ---AGEVLIDGVNLKEFQLKW 334
           N  SL        AL+G SGSGKST++  I R  D  P+    G ++ +G N+   +   
Sbjct: 22  NSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81

Query: 335 --IRGKIGLVSQEPVLFTSSIKDNINYG------KDGASIAEIMAAAELANAAKFIDSLP 386
             +R +IG+V Q+P  F  SI +N+ YG      KD   + E  A  +    A   D + 
Sbjct: 82  VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDE--AVEKSLKGASIWDEVK 139

Query: 387 QGL-DTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKI 445
             L D+ +G     LSGGQ+QR+ IAR +   P+I+LLDE TSALD  S   ++E L  +
Sbjct: 140 DRLHDSALG-----LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGL 194

Query: 446 MINRTTVIVAHRLSTV-RNADLIAVIHQGKLVE 477
             + T ++V   +    R +D       G L+E
Sbjct: 195 KDDYTMLLVTRSMQQASRISDRTGFFLDGDLIE 227

Length = 252

>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE

 Score = 96.0 bits (239), Expect = 3e-22
 Identities = 67/216 (31%), Positives = 104/216 (48%), Gaps = 22/216 (10%)

Query: 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEF---QLK 333
            +    SLSI  G T  L+G+SG GKST+  L+     P  G V   G +L +    Q +
Sbjct: 25  PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRR 84

Query: 334 WIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIM-------AAAELANAAKFIDSLP 386
             R  + LV Q+     S++   +        I E +        + + A  A+ +D + 
Sbjct: 85  AFRRDVQLVFQDSP---SAVNPRMTVR---QIIGEPLRHLTSLDESEQKARIAELLDMV- 137

Query: 387 QGLDTMVGE-HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKI 445
            GL +   +    QLSGGQ QRI IARA+   P++++LDEA S LD   + V+ E L K+
Sbjct: 138 -GLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKL 196

Query: 446 MINRTT--VIVAHRLSTV-RNADLIAVIHQGKLVEK 478
                T  + + H L  V      +AV+ +G++VE+
Sbjct: 197 QQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 96.0 bits (239), Expect = 3e-22
 Identities = 63/232 (27%), Positives = 113/232 (48%), Gaps = 32/232 (13%)

Query: 261 IELKDIYFSYPSRPGEQIF--NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG 318
           I  K++ F Y S   +  F     S +IP G   ++VG +GSGKST+  L+      ++G
Sbjct: 8   IVFKNVSFQYQS---DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSG 64

Query: 319 EVLIDGVNLKEFQLKWIRGKIGLVSQEP--VLFTSSIKDNINYGKDGASI---------A 367
           E+  +   + +   + +R  IG+V Q P      S +K ++ +G +  ++         +
Sbjct: 65  EIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVS 124

Query: 368 EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 427
           E +   ++   A   D  P  L           SGGQKQR+AIA  +  +P +++LDEAT
Sbjct: 125 EALKQVDMLERA---DYEPNAL-----------SGGQKQRVAIAGVLALNPSVIILDEAT 170

Query: 428 SALDAESERVVQEALDKIMINRTTVIVA--HRLSTVRNADLIAVIHQGKLVE 477
           S LD ++ + + + + K+       I++  H LS    AD + V+++G + +
Sbjct: 171 SMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYK 222

Length = 269

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score = 94.7 bits (236), Expect = 3e-22
 Identities = 61/213 (28%), Positives = 105/213 (49%), Gaps = 22/213 (10%)

Query: 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEF---QLK 333
           ++  G SLSI  G   A+VG SGSGKST++ L+    +P +GEVL +G +L +    +  
Sbjct: 19  RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERA 78

Query: 334 WIRGK-IGLVSQEPVLFTS-SIKDNINY-----GKDGASIAEIMAAAELANAAKFIDSLP 386
            +R K +G + Q   L    +  +N+        K      E   A E+           
Sbjct: 79  KLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKE--RAYEMLEKV------- 129

Query: 387 QGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM 446
            GL+  +    ++LSGG++QR+AIARA++  P ++L DE T  LD  + +++ + + ++ 
Sbjct: 130 -GLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELN 188

Query: 447 INRTT--VIVAHRLSTVRNADLIAVIHQGKLVE 477
               T  ++V H L   +  D +  +  G+L  
Sbjct: 189 RELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 95.4 bits (237), Expect = 3e-22
 Identities = 71/231 (30%), Positives = 108/231 (46%), Gaps = 23/231 (9%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD--PQA- 317
           I   D++  Y      +   G  L        AL+G SG GKST +  + R  D  P   
Sbjct: 6   ITSSDVHLFYGKF---EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVT 62

Query: 318 --GEVLIDGVNL--KEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG------KDGASIA 367
             G V + G N+      +  +R ++G+V Q+P  F  SI +N+ YG      KD A + 
Sbjct: 63  ITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLD 122

Query: 368 EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 427
           E +  + L  AA + +     +   + E    LSGGQ+QR+ IAR +   P ++LLDE T
Sbjct: 123 EAVETS-LKQAAIWDE-----VKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPT 176

Query: 428 SALDAESERVVQEALDKIMINRTTVIVAHRLSTV-RNADLIAVIHQGKLVE 477
           SALD  S   ++  L ++    T ++V H +    R +D  A    G L+E
Sbjct: 177 SALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIE 227

Length = 252

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 97.8 bits (243), Expect = 3e-22
 Identities = 65/210 (30%), Positives = 100/210 (47%), Gaps = 14/210 (6%)

Query: 275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA--GEVLIDGVNLKEFQL 332
              + +  SL I +G   AL+G+SG GK+T++  I  F       G + I   +L     
Sbjct: 17  ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLT--HA 74

Query: 333 KWIRGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDT 391
              +  + L+ Q   LF    ++DN+ +G     + +   A  +A+A K +     GL  
Sbjct: 75  PPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLV-----GLGD 129

Query: 392 MVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQE---ALDKIMIN 448
                  QLSGG +QRIAIARAI  +P +LLLDE  SALDA     ++E   AL + +  
Sbjct: 130 AAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPE 189

Query: 449 RTTVIVAH-RLSTVRNADLIAVIHQGKLVE 477
            T + V H +   +  AD   ++  G+L  
Sbjct: 190 LTILCVTHDQDDALTLADKAGIMKDGRLAA 219

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 95.8 bits (238), Expect = 3e-22
 Identities = 76/230 (33%), Positives = 115/230 (50%), Gaps = 21/230 (9%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD--PQA- 317
           +E+KD+   Y  +   +  N  S+ I      AL+G SG GKST +  I R  D  P A 
Sbjct: 22  LEVKDLSIYYGEK---RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSAR 78

Query: 318 --GEVLIDGVNL--KEFQLKWIRGKIGLVSQEPVLFTSSIKDNINY-----GKDGASIAE 368
             GE+L +G+N+      +  +R +IG+V Q+P  F  SI +NI +     G+   S+ +
Sbjct: 79  SEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLD 138

Query: 369 IMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 428
            +    L  AA + D +   L          LSGGQ+QR+ IAR +   P +LLLDE  S
Sbjct: 139 EIVEESLTKAALW-DEVKDRLH----SSALSLSGGQQQRLCIARTLAMKPAVLLLDEPAS 193

Query: 429 ALDAESERVVQEALDKIMINRTTVIVAHRL-STVRNADLIAVIHQGKLVE 477
           ALD  S   ++E + ++    + +IV H +   +R +D  A    G LVE
Sbjct: 194 ALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVE 243

Length = 268

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 97.2 bits (242), Expect = 5e-22
 Identities = 70/213 (32%), Positives = 116/213 (54%), Gaps = 23/213 (10%)

Query: 275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW 334
           G+   +  SL+I  G   AL+G SG GKST++ ++  F  P AG++++DGV+L    +  
Sbjct: 31  GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLS--HVPP 88

Query: 335 IRGKIGLVSQEPVLFTS-SIKDNINYG--KDGASIAEIMAAAE----LANAAKFIDSLPQ 387
            +  I ++ Q   LF   +++ NI +G  +D    AEI +       L +  +F    P 
Sbjct: 89  YQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPH 148

Query: 388 GLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE-SERVVQEALDKI- 445
                      QLSGGQ+QR+A+AR++ K P++LLLDE   ALD +  +R+  E +D + 
Sbjct: 149 -----------QLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILE 197

Query: 446 MINRTTVIVAH-RLSTVRNADLIAVIHQGKLVE 477
            +  T V+V H +   +  A  IA++++GK V+
Sbjct: 198 RVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQ 230

Length = 377

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 98.1 bits (245), Expect = 6e-22
 Identities = 73/244 (29%), Positives = 121/244 (49%), Gaps = 40/244 (16%)

Query: 261 IELKDIYFSYPSRPGEQIF----------NGFSLSIPSGTTAALVGQSGSGKSTVISLIE 310
           +E++D+   +P + G              +G SL++  G T  LVG+SGSGKST+   + 
Sbjct: 277 LEVEDLRVWFPIKGG--FLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALL 334

Query: 311 RFYDPQAGEVLIDGVNLKEF---QLKWIRGKIGLVSQEPVLFTS-----SIKDNINYG-- 360
           R    Q GE+  DG ++      +++ +R ++ +V Q+P  + S     ++   I  G  
Sbjct: 335 RLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDP--YGSLSPRMTVGQIIEEGLR 391

Query: 361 --KDGASIAEIMAAAELANAAKFIDSLPQ-GLD-TMVGEHGTQLSGGQKQRIAIARAILK 416
             +   S AE             I++L + GLD      +  + SGGQ+QRIAIARA++ 
Sbjct: 392 VHEPKLSAAERDQRV--------IEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALIL 443

Query: 417 DPRILLLDEATSALDAESERVVQEALDKIMINR--TTVIVAHRLSTVRN-ADLIAVIHQG 473
            P ++LLDE TSALD   +  V + L  +      + + ++H L+ VR     + V+  G
Sbjct: 444 KPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDG 503

Query: 474 KLVE 477
           K+VE
Sbjct: 504 KIVE 507

Length = 534

>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional

 Score = 94.8 bits (236), Expect = 7e-22
 Identities = 70/222 (31%), Positives = 103/222 (46%), Gaps = 28/222 (12%)

Query: 273 RPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEF-- 330
              + + N  SLS+ SG T AL+G+SG GKST+  L+     P  G V   G  L +   
Sbjct: 22  HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81

Query: 331 -QLKWIRGKIGLVSQEPVLFTSSIKDNINYGKD-GASIAEIM-------AAAELANAAKF 381
            Q K  R  I +V Q+ +         +N  K     I E +        A  LA A++ 
Sbjct: 82  AQRKAFRRDIQMVFQDSI-------SAVNPRKTVREIIREPLRHLLSLDKAERLARASEM 134

Query: 382 IDSL---PQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVV 438
           + ++      LD        QLSGGQ QR+ +ARA+  +P++L+LDEA S LD   +  V
Sbjct: 135 LRAVDLDDSVLDKRPP----QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGV 190

Query: 439 QEALDKIMINRTT--VIVAHRLSTV-RNADLIAVIHQGKLVE 477
              L K+     T  + + H L  V R    + V+  G++VE
Sbjct: 191 IRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232

Length = 268

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 94.4 bits (235), Expect = 9e-22
 Identities = 67/224 (29%), Positives = 112/224 (50%), Gaps = 17/224 (7%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           +E +D+ +SYP   G +   G +     G   AL+G +G+GKST+         P +GEV
Sbjct: 2   LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59

Query: 321 LIDGVNLK--EFQLKWIRGKIGLVSQEP--VLFTSSIKDNINYGKDGASIAEIMAAAELA 376
           LI G  +K  +  L  +R  +G+V Q P   LF  ++++++ +G     +++      + 
Sbjct: 60  LIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVK 119

Query: 377 NAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESER 436
            A K +    +G +     H   LSGGQK+R+AIA  +   P I++LDE TS LD     
Sbjct: 120 EALKAVGM--EGFENKPPHH---LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGAS 174

Query: 437 VVQEALDKIMINR---TTVIVAHRLSTV-RNADLIAVIHQGKLV 476
            + + L    +N+   T +I  H +  V   AD + V+  GK++
Sbjct: 175 QIMKLLYD--LNKEGITIIISTHDVDLVPVYADKVYVMSDGKII 216

Length = 275

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 94.0 bits (234), Expect = 1e-21
 Identities = 62/237 (26%), Positives = 110/237 (46%), Gaps = 39/237 (16%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           I  +++  SY S  G ++ +G SL +  G   A++G +G+GKST++  +     P +GEV
Sbjct: 2   IRAENL--SY-SLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEV 58

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVL-FTSSIKDNINYGK-----------DGASIAE 368
            ++GV L  +  + +     ++ Q   L F  ++++ +  G+           D    A+
Sbjct: 59  TLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQ 118

Query: 369 IMAAAELAN-AAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR------AILKDPRIL 421
            +AA +L+  A +                   LSGG++QR+ +AR        +   R L
Sbjct: 119 ALAATDLSGLAGRDY---------------RTLSGGEQQRVQLARVLAQLWPPVPSGRWL 163

Query: 422 LLDEATSALD-AESERVVQEALDKIMINRTTVIVAHRLS-TVRNADLIAVIHQGKLV 476
            LDE TSALD A     ++ A          + V H L+   + AD I ++HQG+++
Sbjct: 164 FLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVI 220

Length = 259

>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C

 Score = 94.5 bits (235), Expect = 1e-21
 Identities = 63/211 (29%), Positives = 109/211 (51%), Gaps = 19/211 (9%)

Query: 266 IYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGV 325
           ++FS     G  +    +L I  G   A+ G +GSGK++++ LI    +P  G++   G 
Sbjct: 40  LFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG- 98

Query: 326 NLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG--KDGASIAEIMAAAELANAAKFID 383
                       +I   SQ   +   +IK+NI +G   D      ++ A +L      I 
Sbjct: 99  ------------RISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEED---IT 143

Query: 384 SLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEA-L 442
             P+  +T++GE G  LSGGQ+ RI++ARA+ KD  + LLD     LD  +E+ + E+ +
Sbjct: 144 KFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCV 203

Query: 443 DKIMINRTTVIVAHRLSTVRNADLIAVIHQG 473
            K+M N+T ++V  ++  ++ AD I ++H+G
Sbjct: 204 CKLMANKTRILVTSKMEHLKKADKILILHEG 234

The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 98.1 bits (244), Expect = 1e-21
 Identities = 62/217 (28%), Positives = 111/217 (51%), Gaps = 3/217 (1%)

Query: 259  GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG 318
            G ++++ +   Y    G  +    S S+  G    L+G++GSGKST++S + R    + G
Sbjct: 1216 GQMDVQGLTAKYTE-AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE-G 1273

Query: 319  EVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANA 378
            E+ IDGV+     L+  R   G++ Q+  +F+ + + N++   +  S  EI   AE    
Sbjct: 1274 EIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLD-PYEQWSDEEIWKVAEEVGL 1332

Query: 379  AKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVV 438
               I+  P  LD ++ + G  LS G KQ + +AR+IL   +ILLLDE ++ LD  + +++
Sbjct: 1333 KSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQII 1392

Query: 439  QEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKL 475
            ++ L +   N T ++  HR+  +       VI    +
Sbjct: 1393 RKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSV 1429

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 93.9 bits (234), Expect = 2e-21
 Identities = 71/231 (30%), Positives = 116/231 (50%), Gaps = 21/231 (9%)

Query: 260 DIELKDIYFSY-PSRPGEQI-FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA 317
           DI  + +   Y    P E+      ++SIPSG+  A++G +GSGKST++  +     P +
Sbjct: 2   DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS 61

Query: 318 GEVLIDGVNL----KEFQLKWIRGKIGLVSQ--EPVLFTSSIKDNINYGKD--GASIAEI 369
           G V I    +    K  +LK +R K+G+V Q  E  LF  +++ +I +G    G S  + 
Sbjct: 62  GTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEED- 120

Query: 370 MAAAELANAAKFIDSLPQGLDTMVGEHGT-QLSGGQKQRIAIARAILKDPRILLLDEATS 428
                   A + I+ +  GL   +      +LSGGQ +R+AIA  +  +P +L+LDE T+
Sbjct: 121 ----AKQKAREMIELV--GLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTA 174

Query: 429 ALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLV 476
            LD +  + + E   K+      TTV+V H +      AD I V+H+G + 
Sbjct: 175 GLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVF 225

Length = 290

>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional

 Score = 93.2 bits (232), Expect = 2e-21
 Identities = 72/220 (32%), Positives = 107/220 (48%), Gaps = 29/220 (13%)

Query: 263 LKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 322
           L  +   Y  R    + N   L IP+G   A+VG+SG GKST++ L+     P AGE+L 
Sbjct: 15  LNAVSKRYGER---TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLA 71

Query: 323 DGVNLKEFQLKWIRGKIGLVSQEPVLFT-SSIKDNINYGKDG---ASIAEIMAAAELANA 378
               L E      R    L+ Q+  L     + DN+  G  G    +  + +AA  LA+ 
Sbjct: 72  GTAPLAE-----AREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADR 126

Query: 379 AKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVV 438
           A               E    LSGGQKQR+A+ARA++  P +LLLDE   ALDA +   +
Sbjct: 127 A--------------NEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEM 172

Query: 439 QEALDKIMINR--TTVIVAHRLS-TVRNADLIAVIHQGKL 475
           Q+ ++ +      T ++V H +S  V  AD + +I +GK+
Sbjct: 173 QDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212

Length = 257

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 92.6 bits (230), Expect = 2e-21
 Identities = 65/227 (28%), Positives = 111/227 (48%), Gaps = 18/227 (7%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           I+L  I   Y +    Q     +L  P G T  L+G SG+GKS+++ ++     P++G +
Sbjct: 3   IQLNGINCFYGA---HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59

Query: 321 LIDGVNLK------EFQLKWIRGKIGLVSQEPVLF--TSSIKDNINYGKDGASIAEIMAA 372
            I G +        +  ++ +R  +G+V Q+  L+   +  ++ I        +++  A 
Sbjct: 60  NIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQAL 119

Query: 373 AELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 432
           A    A K +  L   L      +   LSGGQ+QR+AIARA++ +P++LL DE T+ALD 
Sbjct: 120 AR---AEKLLKRLR--LKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP 174

Query: 433 E-SERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477
           E + ++V    +      T VIV H +   R  A  +  +  G +VE
Sbjct: 175 EITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVE 221

Length = 242

>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 92.8 bits (230), Expect = 3e-21
 Identities = 76/228 (33%), Positives = 108/228 (47%), Gaps = 37/228 (16%)

Query: 279 FNGF------SLSIPSGTTAALVGQSGSGKSTVISLIERFYD--PQA---GEVLIDGVNL 327
           + GF       L IP+    A +G SG GKST++    R  D  P A   G +L    N+
Sbjct: 30  YGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNI 89

Query: 328 KEFQLKWI--RGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFI-DS 384
            + Q+  +  R ++G+V Q P  F  SI +NI +           A     N  + + DS
Sbjct: 90  YDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAP--------RANGYKGNLDELVEDS 141

Query: 385 LPQG-----LDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQ 439
           L +      +   + E GT LSGGQ+QR+ IARAI   P +LL+DE  SALD  S R V+
Sbjct: 142 LRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVE 201

Query: 440 EALDKIMINRTTVIVAHRLSTV-RNADLIAVIH---------QGKLVE 477
           E   ++    T ++V H +    R AD  A  +         +GKLVE
Sbjct: 202 ELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249

Length = 274

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 91.7 bits (228), Expect = 4e-21
 Identities = 70/229 (30%), Positives = 108/229 (47%), Gaps = 21/229 (9%)

Query: 261 IELKDIYFSYPSRPGE-QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 319
           IE+  +  +     GE  I  G  L +  G T A+VG SGSGKST+++++    DP +GE
Sbjct: 7   IEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGE 66

Query: 320 VLIDG---VNLKEFQLKWIRGK-IGLVSQEPVLFTSSIKDNINYGKDGASIAEI---MAA 372
           V + G     L E     +R + +G V Q   L       N+   ++ A   E+    +A
Sbjct: 67  VRLLGQPLHKLDEDARAALRARHVGFVFQSFHLI-----PNLTALENVALPLELRGESSA 121

Query: 373 AELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 432
              A A   ++++  GL   +  +  QLSGG++QR+A+ARA    P +L  DE T  LD 
Sbjct: 122 DSRAGAKALLEAV--GLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDR 179

Query: 433 ESERVVQEALDKIMINR----TTVIVAHRLSTVRNADLIAVIHQGKLVE 477
            +   + + L    +NR    T V+V H        D    +  G+LVE
Sbjct: 180 ATGDKIADLL--FALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226

Length = 228

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 90.8 bits (226), Expect = 4e-21
 Identities = 55/223 (24%), Positives = 108/223 (48%), Gaps = 23/223 (10%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           +E++++   +         +  S S+  G    L+G +G+GK+T I +I     P +GEV
Sbjct: 1   LEVENVTKRFGRV---TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV 57

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAA 379
           L DG  L        R +IG + +E  L+    + D + Y      +A+ +   +   A 
Sbjct: 58  LFDGKPLDIA----ARNRIGYLPEERGLYPKMKVIDQLVY------LAQ-LKGLKKEEAR 106

Query: 380 KFIDSLPQGLDTMVGEHGT----QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 435
           + ID   + L+  + E+      +LS G +Q++    A++ DP +L+LDE  S LD  + 
Sbjct: 107 RRIDEWLERLE--LSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNV 164

Query: 436 RVVQEALDKIMINRTTVI-VAHRLSTV-RNADLIAVIHQGKLV 476
            ++++ + ++     TVI   H++  V    D + ++++G+ V
Sbjct: 165 ELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAV 207

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 94.0 bits (234), Expect = 4e-21
 Identities = 71/213 (33%), Positives = 109/213 (51%), Gaps = 27/213 (12%)

Query: 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIR 336
           Q+ N  SL IPSG   AL+G SGSGK+T++ +I       +G +   G ++     +   
Sbjct: 16  QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHAR--D 73

Query: 337 GKIGLVSQEPVLFTS-SIKDNINYG---------KDGASI-AEIMAAAELANAAKFIDSL 385
            K+G V Q   LF   ++ DNI +G          + A+I A++    E+   A   D  
Sbjct: 74  RKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY 133

Query: 386 PQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKI 445
           P            QLSGGQKQR+A+ARA+  +P+ILLLDE   ALDA+  + ++  L ++
Sbjct: 134 P-----------AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQL 182

Query: 446 M--INRTTVIVAH-RLSTVRNADLIAVIHQGKL 475
              +  T+V V H +   +  AD + V+ QG +
Sbjct: 183 HEELKFTSVFVTHDQEEAMEVADRVVVMSQGNI 215

Length = 353

>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 92.7 bits (230), Expect = 4e-21
 Identities = 68/227 (29%), Positives = 114/227 (50%), Gaps = 25/227 (11%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           I L+++ +SYP   G       +L I  G    ++G++GSGKST+   +     PQ G+V
Sbjct: 2   IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59

Query: 321 LIDGVNLKEF-QLKWIRGKIGLVSQEP--VLFTSSIKDNINYGKDGASIAEI-------M 370
           L+ G++  +F +L+ IR  +G+V Q P       ++++++ +G +   +  I        
Sbjct: 60  LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDR 119

Query: 371 AAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 430
           A AE+            GL+         LSGGQ Q +A+A  +  +P  L+ DE TS L
Sbjct: 120 ALAEI------------GLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSML 167

Query: 431 DAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIAVIHQGKLV 476
           D +S   V E + K+    +T V + H L  + +AD I V+ +GK+V
Sbjct: 168 DPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIV 214

Length = 274

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 95.3 bits (238), Expect = 5e-21
 Identities = 69/230 (30%), Positives = 119/230 (51%), Gaps = 29/230 (12%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           +E++ I   +P   G    +  SLS+  G   AL+G++G+GKST++ ++   Y P +GE+
Sbjct: 5   LEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61

Query: 321 LIDGVNLKEFQLK----WIRGKIGLVSQEPVLF-TSSIKDNINYGKDGASIAEIMAAAEL 375
            +DG   KE ++K     IR  IG+V Q  +L  T ++ +NI  G + +    I      
Sbjct: 62  RVDG---KEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQAR 118

Query: 376 ANAAKFIDS--LPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-DA 432
           A   +  +   LP   D  V +    LS G++QR+ I +A+ +  R+L+LDE T+ L   
Sbjct: 119 ARIKELSERYGLPVDPDAKVAD----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQ 174

Query: 433 ESERVVQEALDKIMIN-----RTTVIVAHRLSTVRN-ADLIAVIHQGKLV 476
           E++      L +I+       +T + + H+L  V   AD + V+ +GK+V
Sbjct: 175 EADE-----LFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV 219

Length = 501

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 91.6 bits (228), Expect = 6e-21
 Identities = 56/222 (25%), Positives = 102/222 (45%), Gaps = 36/222 (16%)

Query: 276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI 335
           ++I N  SLS+P+G   AL+G +G GKST++    R   PQ+G V +    +     + +
Sbjct: 15  KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQL 74

Query: 336 RGKIGLVSQEPVLFTS-SIKDNINYG-------------KDGASIAEIMAAAELANAAKF 381
             ++ L+ Q  +     ++++ + YG             +D A + + M           
Sbjct: 75  ARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTR------- 127

Query: 382 IDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD----AESERV 437
                  ++ +     T LSGGQ+QR  +A  + +D  ++LLDE T+ LD     E  R+
Sbjct: 128 -------INHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRL 180

Query: 438 VQEALDKIMINRTTVIVAHRLSTV-RNADLIAVIHQGKLVEK 478
           ++E   +    +T V V H L+   R  D + V+  G ++ +
Sbjct: 181 MRELNTQ---GKTVVTVLHDLNQASRYCDHLVVLANGHVMAQ 219

Length = 255

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 88.8 bits (221), Expect = 6e-21
 Identities = 36/78 (46%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 399 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI-NRTTVIVAHR 457
           QLSGGQ+QR+A+ARA+L +P +LLLDE TS LD  S   + E L ++    RT +IV H 
Sbjct: 80  QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHD 139

Query: 458 LSTVRNA-DLIAVIHQGK 474
                 A D + V+  GK
Sbjct: 140 PELAELAADRVIVLKDGK 157

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 96.1 bits (239), Expect = 7e-21
 Identities = 63/211 (29%), Positives = 106/211 (50%), Gaps = 19/211 (9%)

Query: 266 IYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGV 325
           ++FS  S     +    S  +  G   A+ G +GSGKS+++ +I    +P  G++   G 
Sbjct: 429 LFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG- 487

Query: 326 NLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG--KDGASIAEIMAAAELANAAKFID 383
                       +I    Q   +   +IKDNI +G   D      ++ A +L      I 
Sbjct: 488 ------------RISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEED---IA 532

Query: 384 SLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESER-VVQEAL 442
             P+   T++GE G  LSGGQ+ RI++ARA+ KD  + LLD   + LD  +E+ + +  L
Sbjct: 533 LFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCL 592

Query: 443 DKIMINRTTVIVAHRLSTVRNADLIAVIHQG 473
            K+M N+T ++V  +L  ++ AD I ++H+G
Sbjct: 593 CKLMSNKTRILVTSKLEHLKKADKILLLHEG 623

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 91.6 bits (228), Expect = 7e-21
 Identities = 65/213 (30%), Positives = 110/213 (51%), Gaps = 15/213 (7%)

Query: 276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI 335
           ++  NG SL I  G    ++G +G+GKST+++ I     P +G++LIDGV++ +      
Sbjct: 19  KRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKS-VAK 77

Query: 336 RGK-IGLVSQEPVLFTS---SIKDNI-----NYGKDGASIAEIMAAAELANAAKFIDSLP 386
           R   +  V Q+P+  T+   +I++N+        K G S A              +  L 
Sbjct: 78  RANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRER--LARLG 135

Query: 387 QGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM 446
            GL+  + +    LSGGQ+Q +++  A L  P+ILLLDE T+ALD ++   V E   KI+
Sbjct: 136 LGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIV 195

Query: 447 INR--TTVIVAHRL-STVRNADLIAVIHQGKLV 476
                TT++V H +   +   + + ++H GK+V
Sbjct: 196 EEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIV 228

Length = 263

>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 91.6 bits (227), Expect = 7e-21
 Identities = 68/239 (28%), Positives = 114/239 (47%), Gaps = 32/239 (13%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           I++ ++ F Y +   ++I  G S+ I      A++G SG GKST +  + R  + +  EV
Sbjct: 8   IKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELE-SEV 63

Query: 321 LIDG--------VNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG------KDGASI 366
            ++G        +  +   L  +R ++ +V  +P LF  S+ DN+ YG      +    I
Sbjct: 64  RVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEI 123

Query: 367 AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 426
            +I+ +A     A   D +   +     +    LSGGQ+QR+ IARA+   P++LL+DE 
Sbjct: 124 DDIVESA--LKDADLWDEIKHKIH----KSALDLSGGQQQRLCIARALAVKPKVLLMDEP 177

Query: 427 TSALDAESERVVQEALDKIMINR--TTVIVAHRLSTV-RNADLIAVIHQ-----GKLVE 477
              LD  +   V+  +  + +    T VIV+H L  V R +D  A         G+LVE
Sbjct: 178 CFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236

Length = 261

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score = 95.8 bits (238), Expect = 8e-21
 Identities = 63/219 (28%), Positives = 113/219 (51%), Gaps = 14/219 (6%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           I +K+ YFS+ S+  +   +  +L IP G+  A+VG +G GK+++IS +           
Sbjct: 615 ISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSS 674

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAK 380
           ++            IRG +  V Q   +F +++++NI +G D  S      A ++     
Sbjct: 675 VV------------IRGSVAYVPQVSWIFNATVRENILFGSDFES-ERYWRAIDVTALQH 721

Query: 381 FIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE-SERVVQ 439
            +D LP    T +GE G  +SGGQKQR+++ARA+  +  I + D+  SALDA  + +V  
Sbjct: 722 DLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFD 781

Query: 440 EALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
             +   +  +T V+V ++L  +   D I ++ +G + E+
Sbjct: 782 SCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEE 820

Length = 1495

>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional

 Score = 92.6 bits (231), Expect = 1e-20
 Identities = 67/206 (32%), Positives = 110/206 (53%), Gaps = 29/206 (14%)

Query: 284 LSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE------VLID---GVNLKEFQLKW 334
           L++P+    A+ G+SG+GK+++I+ I     PQ G       VL D   G+ L   +   
Sbjct: 19  LTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK--- 75

Query: 335 IRGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMV 393
            R +IG V Q+  LF    ++ N+ YG         MA + +A   K +  L  G++ ++
Sbjct: 76  -R-RIGYVFQDARLFPHYKVRGNLRYG---------MAKSMVAQFDKIVALL--GIEPLL 122

Query: 394 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTT 451
             +   LSGG+KQR+AI RA+L  P +LL+DE  ++LD   +R +   L+++   IN   
Sbjct: 123 DRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPI 182

Query: 452 VIVAHRLSTV-RNADLIAVIHQGKLV 476
           + V+H L  + R AD + V+ QGK+ 
Sbjct: 183 LYVSHSLDEILRLADRVVVLEQGKVK 208

Length = 352

>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 90.9 bits (225), Expect = 1e-20
 Identities = 67/216 (31%), Positives = 106/216 (49%), Gaps = 11/216 (5%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA--- 317
           I++KD+ F Y +    +   G S+ I      A++G SG GKST I  + R  + +    
Sbjct: 8   IKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVK 64

Query: 318 --GEVLIDGVNLKE--FQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAA 373
             G V   G N+ +    +  +R +IG+V Q P  F  SI +N+ YG   ++        
Sbjct: 65  VEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLD 124

Query: 374 ELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 433
           E+  +A    +L Q +   + +    LSGGQ+QR+ IARA+   P++LL+DE  SALD  
Sbjct: 125 EIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPI 184

Query: 434 SERVVQEALDKIMINRTTVIVAHRL-STVRNADLIA 468
           +   V+E +  +    T  IV H +    R +D  A
Sbjct: 185 ATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTA 220

Length = 259

>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional

 Score = 90.1 bits (224), Expect = 2e-20
 Identities = 68/237 (28%), Positives = 113/237 (47%), Gaps = 36/237 (15%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           I+L  I   Y +    Q     +L  P G T  L+G SG+GKS+++ ++     P++G +
Sbjct: 3   IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59

Query: 321 LIDGVNL------KEFQLKWIRGKIGLVSQEPVLFTS-SIKDNI--------NYGKDGAS 365
            I G +        +  ++ +R  +G+V Q+  L+   +++ N+           KD A 
Sbjct: 60  NIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQA- 118

Query: 366 IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 425
           +A      E      + D  P             LSGGQ+QR+AIARA++ +P++LL DE
Sbjct: 119 LARAEKLLERLRLKPYADRFPL-----------HLSGGQQQRVAIARALMMEPQVLLFDE 167

Query: 426 ATSALDAE-SERVVQ--EALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVEK 478
            T+ALD E + ++V     L +  I  T VIV H +   R  A  +  +  G +VE+
Sbjct: 168 PTAALDPEITAQIVSIIRELAETGI--TQVIVTHEVEVARKTASRVVYMENGHIVEQ 222

Length = 242

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 93.9 bits (234), Expect = 2e-20
 Identities = 71/248 (28%), Positives = 119/248 (47%), Gaps = 52/248 (20%)

Query: 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 319
            I L+++  +Y  RP   +    SL++  G    LVG++G+GKST++ ++    +P +GE
Sbjct: 3   MITLENLSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGE 59

Query: 320 VLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYGKDGA-SIAEIMAAAELAN 377
           V                 ++G +SQEP L    ++ D +    +G   + E++A  E A 
Sbjct: 60  VTRPKGL-----------RVGYLSQEPPLDPEKTVLDYV---IEGFGELRELLAELEEAY 105

Query: 378 A--AKFIDSLPQGLDTMVGEHG------------------------TQLSGGQKQRIAIA 411
           A  A   D L   L+ ++ E                          + LSGG ++R+A+A
Sbjct: 106 ALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALA 165

Query: 412 RAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAH-R--LSTVRNADLIA 468
           RA+L++P +LLLDE T+ LD ES   +++ L +     T ++V+H R  L  V  A  I 
Sbjct: 166 RALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR--YPGTVIVVSHDRYFLDNV--ATHIL 221

Query: 469 VIHQGKLV 476
            + +GKL 
Sbjct: 222 ELDRGKLT 229

Length = 530

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 90.7 bits (225), Expect = 2e-20
 Identities = 58/225 (25%), Positives = 120/225 (53%), Gaps = 18/225 (8%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           ++++++ ++Y    G     G +++I  G   A++G +G+GKST+   +     P +G +
Sbjct: 6   LKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63

Query: 321 LIDG--VNLKEFQLKWIRGKIGLVSQEP--VLFTSSIKDNINYGKDGASIAEIMAAAELA 376
           L DG  ++     L  +R  +G+V Q+P   LF++S+  ++++G     + E      + 
Sbjct: 64  LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVD 123

Query: 377 NAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD----A 432
           NA K       G++ +  +    LS GQK+R+AIA  ++ +P++L+LDE T+ LD    +
Sbjct: 124 NALK-----RTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVS 178

Query: 433 ESERVVQEALDKIMINRTTVIVAHRLSTVR-NADLIAVIHQGKLV 476
           E  +++ E   ++ +  T +I  H +  V    D + V+ +G+++
Sbjct: 179 EIMKLLVEMQKELGL--TIIIATHDIDIVPLYCDNVFVMKEGRVI 221

Length = 283

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 89.0 bits (221), Expect = 3e-20
 Identities = 56/204 (27%), Positives = 84/204 (41%), Gaps = 49/204 (24%)

Query: 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL-------IDGVNLKE 329
            +    SL++ +G   AL G SG+GKST++  +   Y P +G +L       +D      
Sbjct: 22  PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81

Query: 330 FQLKWIRGK-IGLVSQ---------------EPVLFTSSIKDNINYGKDGASIAEIMAAA 373
            ++  +R K IG VSQ               EP+L              G       A A
Sbjct: 82  REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER------------GVPREAARARA 129

Query: 374 ELA----NAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 429
                  N  + +  LP              SGG++QR+ IAR  + D  ILLLDE T++
Sbjct: 130 RELLARLNIPERLWHLPP----------ATFSGGEQQRVNIARGFIADYPILLLDEPTAS 179

Query: 430 LDAESERVVQEALDKIMINRTTVI 453
           LDA + +VV E + +       +I
Sbjct: 180 LDAANRQVVVELIAEAKARGAALI 203

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 92.8 bits (231), Expect = 3e-20
 Identities = 71/227 (31%), Positives = 115/227 (50%), Gaps = 38/227 (16%)

Query: 277 QIFNGFSLSIPSGTTAALVGQSGSGKS-TVISLIERFYDPQA----GEVLIDGVNL---K 328
            + N  SL I +G T ALVG+SGSGKS T +S++     P      G++   G +L    
Sbjct: 23  TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82

Query: 329 EFQLKWIRG-KIGLVSQEPVLFTS---SIKDNI--------NYGKDGASIAEIMAAAE-- 374
           E  L+ +RG KI ++ QEP++  +   +++  +           ++ A   EI+   +  
Sbjct: 83  EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAAR-GEILNCLDRV 141

Query: 375 -LANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 433
            +  AAK +   P            QLSGG++QR+ IA A+L  P +L+ DE T+ALD  
Sbjct: 142 GIRQAAKRLTDYPH-----------QLSGGERQRVMIAMALLTRPELLIADEPTTALDVS 190

Query: 434 SERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477
            +  + + L ++   +N   + + H LS VR  AD +AV+  G+ VE
Sbjct: 191 VQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE 237

Length = 529

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 88.6 bits (220), Expect = 3e-20
 Identities = 62/224 (27%), Positives = 112/224 (50%), Gaps = 18/224 (8%)

Query: 261 IELKDIYFSY-PSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 319
           I    +   +   +   Q  +G S ++  G    L+G +G+GK+T + ++    +P AG 
Sbjct: 2   ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61

Query: 320 VLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINY--GKDGASIAEIMAAAELA 376
             +DG ++ +   +  R ++G VS    L+   + ++N+ Y  G  G    E+ A  E  
Sbjct: 62  ATVDGFDVVKEPAE-ARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLE-- 118

Query: 377 NAAKFIDSLPQG--LDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 434
              +  D L     LD  VG      S G +Q++AIARA++ DP +LLLDE T+ LD  +
Sbjct: 119 ---ELADRLGMEELLDRRVGG----FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMA 171

Query: 435 ERVVQEALDKIMINRTTVIVA-HRLSTV-RNADLIAVIHQGKLV 476
            R ++E + ++      ++ + H +  V R  D + V+H+G++V
Sbjct: 172 TRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVV 215

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 89.4 bits (223), Expect = 3e-20
 Identities = 70/238 (29%), Positives = 111/238 (46%), Gaps = 42/238 (17%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           +E +++      R    + +  SL++  G   A++G +G+GKST++  +     P +GEV
Sbjct: 3   LEARNLSVRLGGR---TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV 59

Query: 321 LIDGVNLKEF---QLKWIRGKIGLVSQEPVL---FTSS-------IKDNINYGKDGASIA 367
            ++G  L ++   +L   R    ++ Q   L   FT             ++  +D A +A
Sbjct: 60  RLNGRPLADWSPAELARRRA---VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVA 116

Query: 368 EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL------KDPRIL 421
             +A  +LA+ A              G    QLSGG++QR+ +AR +         PR L
Sbjct: 117 AALAQVDLAHLA--------------GRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWL 162

Query: 422 LLDEATSALD-AESERVVQEALDKIMINRTTVI-VAHRLS-TVRNADLIAVIHQGKLV 476
           LLDE TSALD A    V++ A          VI V H L+   R AD I ++HQG+LV
Sbjct: 163 LLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLV 220

Length = 258

>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 90.3 bits (224), Expect = 4e-20
 Identities = 68/228 (29%), Positives = 112/228 (49%), Gaps = 16/228 (7%)

Query: 261 IELKDIYFSY-PSRPGEQI-FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG 318
           I+ +++ + Y P  P E+   +  S  +  G+  ALVG +GSGKST++        P +G
Sbjct: 3   IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62

Query: 319 EVLIDG----VNLKEFQLKWIRGKIGLVSQ--EPVLFTSSIKDNINYGKDGASIAEIMAA 372
            + I G           LK +R K+ LV Q  E  LF +++  ++ +G      +E  A 
Sbjct: 63  TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAK 122

Query: 373 AELANAAKFIDSLPQGLDTMVGEHGT-QLSGGQKQRIAIARAILKDPRILLLDEATSALD 431
            +   A K++  +  GL   +      +LSGGQ +R+AIA  +  +P IL LDE  + LD
Sbjct: 123 EK---ALKWLKKV--GLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLD 177

Query: 432 AES-ERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477
            E  + ++Q   D      T ++V H +  V   AD + V+  GKL++
Sbjct: 178 PEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIK 225

Length = 287

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score = 88.3 bits (220), Expect = 5e-20
 Identities = 57/212 (26%), Positives = 102/212 (48%), Gaps = 26/212 (12%)

Query: 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGV---NLKEFQLK 333
           QI  G SL++P G   AL+G++G+GK+T++  I     P++G +  DG     L   +  
Sbjct: 14  QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHER- 72

Query: 334 WIRGKIGLVSQEPVLFTS-SIKDNIN---YGKDGASIAEIMAAAELANAAKFIDSLPQGL 389
             R  IG V +   +F   ++++N+    Y +  A     +            +  P+ L
Sbjct: 73  -ARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERV--------YELFPR-L 122

Query: 390 DTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-IN 448
                +    LSGG++Q +AIARA++  P++LLLDE +  L   + ++V+E  + I  + 
Sbjct: 123 KERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIRELR 179

Query: 449 R---TTVIVAHRLSTVRN-ADLIAVIHQGKLV 476
               T ++V          AD   V+ +G++V
Sbjct: 180 DEGVTILLVEQNARFALEIADRAYVLERGRVV 211

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 89.1 bits (221), Expect = 5e-20
 Identities = 61/221 (27%), Positives = 108/221 (48%), Gaps = 30/221 (13%)

Query: 272 SRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ 331
           S  G  I +G  ++ P G+   L+G +GSGKST++ L+     P AG V + GV+L    
Sbjct: 10  SAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLS 69

Query: 332 LKWIRGKIGLVSQE-PVLFTSSIKDNINYGK-------------DGASIAEIMAAAELAN 377
            +    ++ LV Q+       +++D +  G+             D A +   +A  EL++
Sbjct: 70  RRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSH 129

Query: 378 AAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERV 437
            A       + + T        LSGG++QR+ +ARA+ ++P++LLLDE T+ LD  ++  
Sbjct: 130 LAD------RDMST--------LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLE 175

Query: 438 VQEALDKIMINRTTVIVA-HRLS-TVRNADLIAVIHQGKLV 476
               + ++     TV+ A H L+      D + V+  G++V
Sbjct: 176 TLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVV 216

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 89.4 bits (221), Expect = 6e-20
 Identities = 61/211 (28%), Positives = 108/211 (51%), Gaps = 7/211 (3%)

Query: 275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGVNLKE 329
           G+ + +  S+  P+    +L+G +GSGK+T +  + R  D       +G+VL+ G ++  
Sbjct: 33  GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFN 92

Query: 330 FQ-LKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQG 388
           ++ +   R ++G++ Q P  F  SI DN+  G     +        +A A      L   
Sbjct: 93  YRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDA 152

Query: 389 LDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMIN 448
           +   + +   +LSGGQ+Q + +AR +  +P +LLLDE TSALD  +   ++E +  +   
Sbjct: 153 VKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADR 212

Query: 449 RTTVIVAHRLS-TVRNADLIAVIHQGKLVEK 478
            T +IV H L+   R +D  A+   G+LVE+
Sbjct: 213 LTVIIVTHNLAQAARISDRAALFFDGRLVEE 243

Length = 276

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 87.7 bits (218), Expect = 6e-20
 Identities = 56/211 (26%), Positives = 106/211 (50%), Gaps = 24/211 (11%)

Query: 275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW 334
            +++ +  SL +  G     +G +G+GK+T + +I     P +GE+  DG + ++     
Sbjct: 12  KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQK--NIE 69

Query: 335 IRGKIGLVSQEPVLFTS-SIKDNIN-----YGKDGASIAEIMAAAELANAAKFIDSLPQG 388
              +IG + + P  + + + ++N+       G     I E++    L ++AK        
Sbjct: 70  ALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAK-------- 121

Query: 389 LDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMIN 448
               V       S G KQR+ IA A+L +P +L+LDE T+ LD +  + ++E +  +   
Sbjct: 122 --KKVK----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQ 175

Query: 449 RTTVIVA-HRLSTVRN-ADLIAVIHQGKLVE 477
             TV+++ H LS ++  AD I +I++GKL+E
Sbjct: 176 GITVLISSHLLSEIQKVADRIGIINKGKLIE 206

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score = 90.5 bits (225), Expect = 7e-20
 Identities = 70/209 (33%), Positives = 103/209 (49%), Gaps = 19/209 (9%)

Query: 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIR 336
                 SLS+  G    L+G SG GK+T++ +I       AG +   G ++   +L   +
Sbjct: 18  TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDIT--RLPPQK 75

Query: 337 GKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGE 395
              G+V Q   LF + ++ DNI YG         M  AE+A     +  L  GL     +
Sbjct: 76  RDYGIVFQSYALFPNLTVADNIAYGLKNRG----MGRAEVAERVAELLDL-VGLPGSERK 130

Query: 396 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA-ESERVVQE--ALDKIMINRTTV 452
           +  QLSGGQ+QR+A+ARA+   P +LLLDE  SALDA   E +  E   L +  +  TT+
Sbjct: 131 YPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQR-RLGVTTI 189

Query: 453 IVAH----RLSTVRNADLIAVIHQGKLVE 477
           +V H     LS    AD I V++ G + +
Sbjct: 190 MVTHDQEEALSM---ADRIVVMNHGVIEQ 215

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 86.7 bits (215), Expect = 2e-19
 Identities = 64/210 (30%), Positives = 105/210 (50%), Gaps = 27/210 (12%)

Query: 275 GEQ-IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLK 333
           G+Q   N  SL++P  +   L+G +G+GKST++ +I     P +GE++ DG       L 
Sbjct: 11  GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLH 70

Query: 334 WIRGKIGLVSQEPVLFTS-SIKDNI-----NYGKDGASIAEIMAAAELANAAKFIDSLPQ 387
               KIG + + P L+ + + ++N+       G   + I E++   +L N  K       
Sbjct: 71  ----KIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGK------- 119

Query: 388 GLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI 447
                  +   Q S G KQR+ IA A+L  P++L+LDE T+ LD    + ++E +     
Sbjct: 120 -------KKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE 172

Query: 448 NRTTVIV-AHRLSTVRN-ADLIAVIHQGKL 475
              TVI+ +H LS V+  AD I +I +G L
Sbjct: 173 QGITVILSSHILSEVQQLADHIGIISEGVL 202

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 87.4 bits (217), Expect = 2e-19
 Identities = 56/196 (28%), Positives = 97/196 (49%), Gaps = 34/196 (17%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           +++  +Y  Y  +P        +L++ SG    ++G SG GK+T+++LI  F   Q G +
Sbjct: 2   LQISHLYADYGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI 58

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQ-EPVLFTSSIKDNINYGKDGASIA---------EIM 370
            +DG       ++    + G+V Q E +L   +++DN+ +G   A +          +++
Sbjct: 59  TLDGK-----PVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQML 113

Query: 371 AAAELANA-AKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 429
               L  A  ++I                QLSGGQ+QR+ IARA+  +P++LLLDE   A
Sbjct: 114 KKVGLEGAEKRYI---------------WQLSGGQRQRVGIARALAANPQLLLLDEPFGA 158

Query: 430 LDAESERVVQEALDKI 445
           LDA +   +Q  L K+
Sbjct: 159 LDAFTREQMQTLLLKL 174

Length = 255

>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional

 Score = 90.9 bits (226), Expect = 2e-19
 Identities = 75/227 (33%), Positives = 114/227 (50%), Gaps = 20/227 (8%)

Query: 261 IELKDIYFSYPSRPGEQ---IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA 317
           +ELKDI  SYPS  GE+   +  G SL I +G   A+VG SGSGKST+++++     P +
Sbjct: 5   LELKDIRRSYPS--GEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTS 62

Query: 318 GEVLIDGVNLKEF------QLKWIRGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIM 370
           G   + G ++         QL+  R   G + Q   L +  +   N+      A  A + 
Sbjct: 63  GTYRVAGQDVATLDADALAQLR--REHFGFIFQRYHLLSHLTAAQNVEVP---AVYAGLE 117

Query: 371 AAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 430
               L  A + +  L  GL+  V    +QLSGGQ+QR++IARA++   +++L DE T AL
Sbjct: 118 RKQRLLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGAL 175

Query: 431 DAESERVVQEALDKIMINRTTVI-VAHRLSTVRNADLIAVIHQGKLV 476
           D+ S   V   L ++     TVI V H       A+ +  I  G++V
Sbjct: 176 DSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIV 222

Length = 648

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 87.3 bits (216), Expect = 2e-19
 Identities = 74/230 (32%), Positives = 115/230 (50%), Gaps = 34/230 (14%)

Query: 273 RPGE-QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVN----- 326
           R GE ++  G SL   +G   +++G SGSGKST +  I     P  G ++++G       
Sbjct: 14  RYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVR 73

Query: 327 -----LKEF---QLKWIRGKIGLVSQEPVLFTS-SIKDNINYGKD---GASIAEIMAAAE 374
                LK     QL+ +R ++ +V Q   L++  ++ +N+        G S  E    A 
Sbjct: 74  DKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAV 133

Query: 375 LANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 434
              A   ID   QG      ++   LSGGQ+QR++IARA+  +P +LL DE TSALD E 
Sbjct: 134 KYLAKVGIDERAQG------KYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPE- 186

Query: 435 ERVVQEALDKIMIN-----RTTVIVAHRLSTVRN-ADLIAVIHQGKLVEK 478
             +V E L +IM       +T V+V H +   R+ +  +  +HQGK+ E+
Sbjct: 187 --LVGEVL-RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 233

Length = 257

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 87.6 bits (217), Expect = 2e-19
 Identities = 66/226 (29%), Positives = 117/226 (51%), Gaps = 22/226 (9%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           IE +D+ +SY     ++  N  +   P  +  A++G +G+GKST+         P +G V
Sbjct: 4   IETRDLCYSY--SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV 61

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEP--VLFTSSIKDNINYGKDGASIAEIMAAAELANA 378
           LI G  + +  ++ +R  +GLV Q P   +F+ +++ +I +G     + E   A  +++A
Sbjct: 62  LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSA 121

Query: 379 AKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVV 438
              +     GL+ +       LSGG+K+R+AIA  I  +P++L+LDE T+ LD +    V
Sbjct: 122 LHML-----GLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQG---V 173

Query: 439 QEALDKIMINR-------TTVIVAHRLSTVRN-ADLIAVIHQGKLV 476
           +E +D   +N        T +   H+L  V   AD I V+ +G++V
Sbjct: 174 KELID--FLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIV 217

Length = 277

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 85.8 bits (213), Expect = 6e-19
 Identities = 56/206 (27%), Positives = 101/206 (49%), Gaps = 14/206 (6%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           IELK++      +    I    S  +  G   A+VG +G+GK+T++SL+   + P +G+V
Sbjct: 32  IELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88

Query: 321 LIDGVNLKEFQLKW-IRGKIGLVS---QEPVLFTSSIKDNINYGKDGAS--IAEIMAAAE 374
            + G    + +  + +R +IGLVS    E      +++D +  G   +     E + A +
Sbjct: 89  TLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAED 148

Query: 375 LANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 434
           LA A   ++ L  G   +       LS G+++R+ IARA++KDP +L+LDE    LD  +
Sbjct: 149 LAAAQWLLELL--GAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIA 206

Query: 435 ERVVQEALDKIMINR---TTVIVAHR 457
              +   L+++  +      + V H 
Sbjct: 207 REQLLNRLEELAASPGAPALLFVTHH 232

Length = 257

>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 86.2 bits (213), Expect = 9e-19
 Identities = 70/235 (29%), Positives = 117/235 (49%), Gaps = 16/235 (6%)

Query: 256 DIRGDIELKDIYFSYPSR-PGE-QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFY 313
           D   DI L ++ ++Y  + P E +  N  SL+        ++G +GSGKST+I L     
Sbjct: 2   DFSKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLI 61

Query: 314 DPQAGEVLIDG----VNLKEF-QLKWIRGKIGLVSQEP--VLFTSSIKDNINYGKDGASI 366
             + G+ ++       NLK+  ++K +R +IGLV Q P   LF  +I+ +I +G      
Sbjct: 62  ISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGE 121

Query: 367 AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 426
            +  A  ++    K +  LP+     V     +LSGGQK+R+A+A  I  D   L+LDE 
Sbjct: 122 NKQEAYKKVPELLKLV-QLPE---DYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEP 177

Query: 427 TSALDAESERVVQEALDKIMIN--RTTVIVAHRLSTV-RNADLIAVIHQGKLVEK 478
           T  LD + E       +++     +  ++V H +  V R AD + V+H+GK++  
Sbjct: 178 TGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISI 232

Length = 289

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 85.1 bits (211), Expect = 1e-18
 Identities = 61/226 (26%), Positives = 119/226 (52%), Gaps = 18/226 (7%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           I ++++  SY ++    + +  SL IP G   +++G +G+GKST++S++ R     +GE+
Sbjct: 2   ITIENVSKSYGTKV---VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYGK----DGASIAEIMAAAEL 375
            IDG+ L     K +  K+ ++ QE  + +  +++D + +G+     G    E      +
Sbjct: 59  TIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKE---DRRI 115

Query: 376 ANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 435
            N A  I+ L   L+ +   +  +LSGGQ+QR  IA  + +D   +LLDE  + LD +  
Sbjct: 116 INEA--IEYL--HLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHS 171

Query: 436 RVVQEALDKIM--INRTTVIVAHRLS-TVRNADLIAVIHQGKLVEK 478
             + + L ++   + +T V+V H ++     +D I  +  GK+V++
Sbjct: 172 VQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQ 217

Length = 252

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score = 88.5 bits (220), Expect = 1e-18
 Identities = 68/318 (21%), Positives = 125/318 (39%), Gaps = 54/318 (16%)

Query: 165 GLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAF 224
            LG+G  + V     +   +F G++        G ++  +        SL        A 
Sbjct: 296 QLGYGWLSVVLPILIAAPRYFSGQITF------GGLMQAVGAFGQVHSSLSWFIDNYDAI 349

Query: 225 AAGQAAA---YKLFEAIERKPLIDAYDSNG----VKLDDIRGDIELKDIYFSYPSRPGEQ 277
           A  +A      +  +A+E   +     +         D+    I L+++    P   G+ 
Sbjct: 350 ADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPD--GQT 407

Query: 278 IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRG 337
           + +  +  +  G    + G+SG+GK++++  +   +                    W  G
Sbjct: 408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWP-------------------WGSG 448

Query: 338 KIGL--------VSQEPVLFTSSIKDNINYGKDGASI--AEIMAAAELANAAKFIDSLPQ 387
           +I +        + Q P L   ++++ + Y         AE++A           + L +
Sbjct: 449 RISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE 508

Query: 388 GLD-TMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM 446
                 V      LSGG++QR+A AR +L  P+ + LDEATSALD E+E  + + L +  
Sbjct: 509 EDRWDRV------LSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKE-E 561

Query: 447 INRTTVI-VAHRLSTVRN 463
           +   TVI V HR  T+ N
Sbjct: 562 LPDATVISVGHR-PTLWN 578

Length = 604

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 85.5 bits (212), Expect = 8e-18
 Identities = 75/245 (30%), Positives = 122/245 (49%), Gaps = 40/245 (16%)

Query: 261 IELKDIYFSYPSRPG--------EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERF 312
           ++++ +  ++P R G          +    S ++  G T  LVG+SGSGKST    + R 
Sbjct: 276 LDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRL 335

Query: 313 YDPQAGEVLIDGVNLKEF---QLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAE- 368
            + Q GE+  DG  L      QL  +R +I +V Q+P    SS+   +N  +    I E 
Sbjct: 336 INSQ-GEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDP---NSSLNPRLNVLQ---IIEEG 388

Query: 369 ------IMAAAELANAAKFIDSLPQ-GLD-TMVGEHGTQLSGGQKQRIAIARAILKDPRI 420
                  ++AA+     + I  + + GLD      +  + SGGQ+QRIAIARA++  P +
Sbjct: 389 LRVHQPTLSAAQ--REQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSL 446

Query: 421 LLLDEATSALDAESERVVQE---ALDKIMINR---TTVIVAHRLSTVRN-ADLIAVIHQG 473
           ++LDE TS+LD    + VQ    AL K +  +     + ++H L  VR     + V+ QG
Sbjct: 447 IILDEPTSSLD----KTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQG 502

Query: 474 KLVEK 478
           ++VE+
Sbjct: 503 EVVEQ 507

Length = 529

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 83.7 bits (207), Expect = 1e-17
 Identities = 63/200 (31%), Positives = 107/200 (53%), Gaps = 20/200 (10%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           I+L  +  SY  +    + NG S ++ SG    L+G +G+GKST+  +I     P AG++
Sbjct: 42  IDLAGVSKSYGDKA---VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVL---FTSSIKDN-INYGKD-GASIAEIMAA-AE 374
            + GV +   + +  R +IG+V Q   L   FT  +++N + +G+  G S  EI A    
Sbjct: 99  TVLGVPVPA-RARLARARIGVVPQFDNLDLEFT--VRENLLVFGRYFGMSTREIEAVIPS 155

Query: 375 LANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 434
           L   A+    L    D  V +    LSGG K+R+ +ARA++ DP++L+LDE T+ LD  +
Sbjct: 156 LLEFAR----LESKADARVSD----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA 207

Query: 435 ERVVQEALDKIMINRTTVIV 454
             ++ E L  ++    T+++
Sbjct: 208 RHLIWERLRSLLARGKTILL 227

Length = 340

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 81.0 bits (200), Expect = 1e-17
 Identities = 51/163 (31%), Positives = 79/163 (48%), Gaps = 12/163 (7%)

Query: 274 PGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGVNLKEF 330
           PG  +    + +I  G    L+G SG GKST++S +      Q    GE+ ++   L   
Sbjct: 13  PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLD-- 70

Query: 331 QLKWIRGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGL 389
            L   + +IG++ Q+ +LF   S+  N+ +    A  A +   A    A   ++    GL
Sbjct: 71  MLPAAQRQIGILFQDALLFPHLSVGQNLLF----ALPATLKGNARRNAANAALERS--GL 124

Query: 390 DTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 432
           D    +    LSGGQ+ R+A+ RA+L  P+ LLLDE  S LD 
Sbjct: 125 DGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167

Length = 213

>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 82.0 bits (202), Expect = 1e-17
 Identities = 65/199 (32%), Positives = 91/199 (45%), Gaps = 26/199 (13%)

Query: 286 IPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNL-------KEFQLKWIRGK 338
           I        +G SG GKSTV+  + R  D   G      V+        K      +R  
Sbjct: 31  IRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRY 90

Query: 339 IGLVSQEPVLFTSSIKDNINYG--------KDGASIAEIMAAAELANAAKFIDSLPQGLD 390
           IG+V Q+P  F+ SI DN+ +G          G  +   +  A L +  K  D L     
Sbjct: 91  IGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVK--DKLKVS-- 146

Query: 391 TMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRT 450
                 G  LSGGQ+QR+ IARAI  +P +LLLDE  SALD  + R V+E + ++  + T
Sbjct: 147 ------GLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYT 200

Query: 451 TVIVAHRL-STVRNADLIA 468
             +V H +   +R AD  A
Sbjct: 201 IALVTHNMQQAIRVADTTA 219

Length = 261

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 81.4 bits (201), Expect = 2e-17
 Identities = 63/190 (33%), Positives = 93/190 (48%), Gaps = 33/190 (17%)

Query: 281 GFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE--------FQ- 331
           G +L+I  G   +L+G SG GKST+++LI     P +G V+++G  + E        FQ 
Sbjct: 3   GVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQN 62

Query: 332 ---LKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQG 388
              L W+      V +   L    +  +++  +  A + E +A   L  AA   D  P  
Sbjct: 63  YSLLPWLT-----VRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAA---DKRP-- 112

Query: 389 LDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMIN 448
                     QLSGG KQR+AIARA+   P++LLLDE   ALDA +   +QE L +I   
Sbjct: 113 ---------GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEE 163

Query: 449 R--TTVIVAH 456
              T ++V H
Sbjct: 164 HRVTVLMVTH 173

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional

 Score = 81.7 bits (202), Expect = 2e-17
 Identities = 61/234 (26%), Positives = 109/234 (46%), Gaps = 33/234 (14%)

Query: 261 IELKDIYFSYPSRPGEQIF----NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ 316
           I+ K++ + Y     E       +  +L +  G    ++G++GSGKST+   +     P 
Sbjct: 5   IKCKNVSYKY-ESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS 63

Query: 317 AGEVLIDGVNLKEFQLKW-IRGKIGLVSQEP--VLFTSSIKDNINYGKDGASIA--EIMA 371
            G+V +DG++  + +  W IR K G+V Q P   +  + +++++ +G +   I   EI  
Sbjct: 64  EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRE 123

Query: 372 AAELA----NAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 427
             + +       ++    P             LSGGQKQR+AIA  +   P  ++ DE T
Sbjct: 124 RVDESLKKVGMYEYRRHAPH-----------LLSGGQKQRVAIAGILAMRPECIIFDEPT 172

Query: 428 SALDAESERVVQEALDKIM-INR----TTVIVAHRLSTVRNADLIAVIHQGKLV 476
           + LD    R   E ++ I  +N+    T +++ H +     AD I V+  GK+V
Sbjct: 173 AMLDPSGRR---EVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVV 223

Length = 280

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 80.0 bits (198), Expect = 4e-17
 Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 23/205 (11%)

Query: 282 FSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGL 341
           F L++  G   A++G SG+GKST+++LI  F  P +G + ++G +         R  + +
Sbjct: 18  FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVSM 75

Query: 342 VSQEPVLFTS-SIKDNINYGKD------GASIAEIMAAAELANAAKFIDSLPQGLDTMVG 394
           + QE  LF+  ++  NI  G +       A   ++ A A        +  LP        
Sbjct: 76  LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-------- 127

Query: 395 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINR--TTV 452
               QLSGGQ+QR+A+AR ++++  ILLLDE  SALD    + +   + ++   R  T +
Sbjct: 128 ---GQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLL 184

Query: 453 IVAHRLS-TVRNADLIAVIHQGKLV 476
           +V+H L    R A    V+  G++ 
Sbjct: 185 MVSHSLEDAARIAPRSLVVADGRIA 209

Length = 232

>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 81.8 bits (202), Expect = 4e-17
 Identities = 63/245 (25%), Positives = 116/245 (47%), Gaps = 30/245 (12%)

Query: 257 IRGDI--ELKDIYFSYPSRPGEQI--FNGFSLSIPSGTTAALVGQSGSGKSTVIS----- 307
           +  DI   +K++Y  +  +   ++   N  S +        ++G SGSGKST+++     
Sbjct: 16  LSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL 75

Query: 308 LIERFYDPQAGEVLIDGVNLKEFQL-----------KWIRGKIGLVSQEP--VLFTSSIK 354
           +  ++   Q G++ I         +           K +R ++ +V Q P   LF  +I+
Sbjct: 76  IKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIE 135

Query: 355 DNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQKQRIAIARA 413
            +I +G     + +  A      A  +++ +  GLD + +      LSGGQK+R+AIA  
Sbjct: 136 KDIMFGPVALGVKKSEAKKL---AKFYLNKM--GLDDSYLERSPFGLSGGQKRRVAIAGI 190

Query: 414 ILKDPRILLLDEATSALDAESER-VVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIH 471
           +   P IL+ DE T+ LD + E  ++Q  LD    N+T  ++ H +  V   AD + V+ 
Sbjct: 191 LAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMD 250

Query: 472 QGKLV 476
           +GK++
Sbjct: 251 KGKIL 255

Length = 320

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 80.6 bits (199), Expect = 5e-17
 Identities = 64/224 (28%), Positives = 104/224 (46%), Gaps = 46/224 (20%)

Query: 263 LKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 322
           L+++ F  P R    + +  SL+ P+G    L+G +GSGKST++ ++ R   P  GE+L+
Sbjct: 14  LRNVSFRVPGR---TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL 70

Query: 323 DGVNLKEFQLKWIRGKIGLVSQE-PVLFTSSIKDNINYGK-------------DGASIAE 368
           D   L+ +  K    K+  + Q+ P     ++++ +  G+             D   + E
Sbjct: 71  DAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEE 130

Query: 369 IMAAAELAN-AAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 427
            ++   L   A + +DS               LSGG++QR  IA  + +D R LLLDE T
Sbjct: 131 AISLVGLKPLAHRLVDS---------------LSGGERQRAWIAMLVAQDSRCLLLDEPT 175

Query: 428 SALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIH 471
           SALD   +  V             + + HRLS  R   +IAV+H
Sbjct: 176 SALDIAHQVDV-------------LALVHRLSQERGLTVIAVLH 206

Length = 265

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 79.0 bits (195), Expect = 7e-17
 Identities = 55/211 (26%), Positives = 100/211 (47%), Gaps = 30/211 (14%)

Query: 280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVN-LKEFQLKWIRGK 338
            G S  +  G    L+G +G+GK+T I ++     P +G   + G + ++E   + +R +
Sbjct: 17  RGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE--PREVRRR 74

Query: 339 IGLVSQEPVLFTS-SIKDNIN-----YGKDGAS----IAEIMAAAELANAAKFIDSLPQG 388
           IG+V Q+  +    +  +N+      YG  GA     I E++    L  AA         
Sbjct: 75  IGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAA--------- 125

Query: 389 LDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-- 446
            D +V  +    SGG ++R+ IAR+++  P +L LDE T  LD ++   V E ++K+   
Sbjct: 126 -DRLVKTY----SGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEE 180

Query: 447 INRTTVIVAHRLSTVRN-ADLIAVIHQGKLV 476
              T ++  H +       D +A+I  G+++
Sbjct: 181 FGMTILLTTHYMEEAEQLCDRVAIIDHGRII 211

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 80.2 bits (197), Expect = 1e-16
 Identities = 61/227 (26%), Positives = 116/227 (51%), Gaps = 16/227 (7%)

Query: 261 IELKDIYFSY-PSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG 318
           I+ + + ++Y P+ P   +      L +  G+  AL+G +GSGKST++  +     P  G
Sbjct: 2   IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61

Query: 319 EVLIDGVNL----KEFQLKWIRGKIGLVSQEP--VLFTSSIKDNINYGKDGASIAEIMAA 372
           +V +  + +    K+ ++K +R K+G+V Q P   LF  ++  ++ +G     I +  A 
Sbjct: 62  KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAE 121

Query: 373 AELANAAKFIDSLPQGLDTMVGEHGT-QLSGGQKQRIAIARAILKDPRILLLDEATSALD 431
              A   + +     GL     E    +LSGGQ +R+AIA  +  +P +L+LDE T+ LD
Sbjct: 122 KIAAEKLEMV-----GLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLD 176

Query: 432 AESERVVQEALDKI-MINRTTVIVAHRLSTVRN-ADLIAVIHQGKLV 476
            ++   + +  + I    +T V+V H +  V + AD + ++ +G ++
Sbjct: 177 PKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHII 223

Length = 288

>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 79.5 bits (196), Expect = 1e-16
 Identities = 60/224 (26%), Positives = 111/224 (49%), Gaps = 36/224 (16%)

Query: 275 GEQIFNG---FSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ 331
             Q        S ++  G T A++G++GSGKST+  ++    +P +GE+LI+   L  F 
Sbjct: 22  RRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPL-HFG 80

Query: 332 LKWIRGK-IGLVSQEPVLFTSSIKDNINYGK--DGASIAEIMAAAELANAA---KFIDSL 385
               R K I ++ Q+P    +S+   +  G+  D      +    +L       +  ++L
Sbjct: 81  DYSFRSKRIRMIFQDP---NTSLNPRLRIGQILDFP----LRLNTDLEPEQRRKQIFETL 133

Query: 386 PQGLDTMVG---EHGT----QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE--- 435
                 MVG   +H       L+ GQKQR+A+ARA++  P+I++ DEA ++LD       
Sbjct: 134 -----RMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQL 188

Query: 436 -RVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477
             ++ E  +K  I  + + V   +  +++ +D + V+H+G++VE
Sbjct: 189 INLMLELQEKQGI--SYIYVTQHIGMIKHISDQVLVMHEGEVVE 230

Length = 267

>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 68/228 (29%), Positives = 109/228 (47%), Gaps = 30/228 (13%)

Query: 260 DIELKDIYFSYPSRPGE-QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG 318
            + L+++  +Y    G+  I    +L I  G     VG SG GKST++ +I    D  +G
Sbjct: 3   SVTLRNVTKAY----GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSG 58

Query: 319 EVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYGKD--GASIAEIM----A 371
           ++ I    + +      RG +G+V Q   L+   S+ +N+++G    GA   EI      
Sbjct: 59  DLFIGEKRMNDVPPA-ERG-VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQ 116

Query: 372 AAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 431
            AE+   A  +D  P+ L           SGGQ+QR+AI R ++ +P + LLDE  S LD
Sbjct: 117 VAEVLQLAHLLDRKPKAL-----------SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165

Query: 432 AE---SERVVQEALDKIMINRTTVIVAH-RLSTVRNADLIAVIHQGKL 475
           A      R+    L K  + RT + V H ++  +  AD I V+  G++
Sbjct: 166 AALRVQMRIEISRLHK-RLGRTMIYVTHDQVEAMTLADKIVVLDAGRV 212

Length = 369

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 81.1 bits (201), Expect = 2e-16
 Identities = 51/187 (27%), Positives = 83/187 (44%), Gaps = 27/187 (14%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           +E +++   Y    G  +    S  I  G   A+VG +G+GKST++ L+     P +G V
Sbjct: 322 LEFENVSKGYD--GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQE-PVLFTS-SIKDNINYGKDGASIAEIMAAAELANA 378
            + G  +K          IG   Q    L    ++ + ++ G       E+ A       
Sbjct: 380 KV-GETVK----------IGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYL----- 423

Query: 379 AKFIDSLPQGLDT-MVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERV 437
            +F      G       +    LSGG+K R+ +A+ +L+ P +LLLDE T+ LD ES   
Sbjct: 424 GRF------GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEA 477

Query: 438 VQEALDK 444
           ++EAL  
Sbjct: 478 LEEALLD 484

Length = 530

>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional

 Score = 78.0 bits (192), Expect = 2e-16
 Identities = 62/212 (29%), Positives = 108/212 (50%), Gaps = 19/212 (8%)

Query: 275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVN---LKEFQ 331
           G Q   G +  +  G  A L G SG+GKST++ LI     P AG++   G +   LK  +
Sbjct: 14  GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNRE 73

Query: 332 LKWIRGKIGLVSQEP-VLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQ--G 388
           + ++R +IG++ Q+  +L   ++ DN+       +I  I+A A   +  + + +     G
Sbjct: 74  VPFLRRQIGMIFQDHHLLMDRTVYDNV-------AIPLIIAGASGDDIRRRVSAALDKVG 126

Query: 389 LDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD-AESERVVQ--EALDKI 445
           L         QLSGG++QR+ IARA++  P +LL DE T  LD A SE +++  E  +++
Sbjct: 127 LLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRV 186

Query: 446 MINRTTVIVAHRLSTV-RNADLIAVIHQGKLV 476
            +  T ++  H +  + R +  +  +  G L 
Sbjct: 187 GV--TVLMATHDIGLISRRSYRMLTLSDGHLH 216

Length = 222

>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional

 Score = 78.3 bits (193), Expect = 3e-16
 Identities = 63/236 (26%), Positives = 115/236 (48%), Gaps = 40/236 (16%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           ++++ + F+  +R    IF+  SL++P G   A++G SG GK+T++ LI     P  GE+
Sbjct: 8   VDMRGVSFTRGNRC---IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64

Query: 321 LIDGVN---LKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYG-KDGASIAEI------ 369
           L DG N   +   +L  +R ++ ++ Q   LFT  ++ DN+ Y  ++   +         
Sbjct: 65  LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTV 124

Query: 370 ---MAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 426
              + A  L  AAK + S              +LSGG  +R A+ARAI  +P +++ DE 
Sbjct: 125 MMKLEAVGLRGAAKLMPS--------------ELSGGMARRAALARAIALEPDLIMFDEP 170

Query: 427 TSALDAESERVVQEALDKI--MINRTTVIVAHR----LSTVRNADLIA---VIHQG 473
               D  +  V+ + + ++   +  T V+V+H     LS   +A ++A   ++  G
Sbjct: 171 FVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHG 226

Length = 269

>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional

 Score = 77.8 bits (192), Expect = 4e-16
 Identities = 65/215 (30%), Positives = 102/215 (47%), Gaps = 32/215 (14%)

Query: 281 GFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP----QAGEVLIDGVNLKEFQLKWIR 336
           G SL++  G   ALVG SGSGKS   +             AG VL+DG  +    L   R
Sbjct: 21  GVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCAL---R 77

Query: 337 GK-IGLVSQEP--------VLFTSSIKDNINYGK--DGASIAEIMAAAELANAAKFIDSL 385
           G+ I  + Q P         + T + +  +  GK  D A++   + A  L NAA+ +   
Sbjct: 78  GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLY 137

Query: 386 PQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKI 445
           P            ++SGG  QR+ IA A+L +   ++ DE T+ LD  ++  + + L+ I
Sbjct: 138 P-----------FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESI 186

Query: 446 MINRT--TVIVAHRLSTV-RNADLIAVIHQGKLVE 477
           +  R    ++V H +  V R AD +AV+  G++VE
Sbjct: 187 VQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVE 221

Length = 254

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 77.8 bits (192), Expect = 4e-16
 Identities = 59/205 (28%), Positives = 98/205 (47%), Gaps = 11/205 (5%)

Query: 280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGV----NLKEFQLKWI 335
           N  S S+  G    L+G +G+GK+T++ +I     PQ GEVL DG      L E ++   
Sbjct: 22  NDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRI--A 79

Query: 336 RGKIGLVSQEPVLFTS-SIKDN--INYGKDGASIAEIMAAAELANAAKFIDSLPQ-GLDT 391
           R  IG   Q+P +F + ++++N  +   +D +  A + A        +  + L   GL  
Sbjct: 80  RAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGD 139

Query: 392 MVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTT 451
                   LS GQKQ + I   + +DP++LLLDE  + +         E L  +    + 
Sbjct: 140 ERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSI 199

Query: 452 VIVAHRLSTVRN-ADLIAVIHQGKL 475
           ++V H +  VR  AD + V+H+G +
Sbjct: 200 LVVEHDMGFVREIADKVTVLHEGSV 224

Length = 249

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 78.6 bits (194), Expect = 4e-16
 Identities = 68/233 (29%), Positives = 112/233 (48%), Gaps = 39/233 (16%)

Query: 261 IELKDIYFSYPSR-PGE-QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG 318
           I++K+I   +  + P E +  +  S+ I  G   A++GQ+GSGK+T I  +     P  G
Sbjct: 3   IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62

Query: 319 EV---LIDGVNLKEF---------------------QLKWIRGKIGLVSQ--EPVLFTSS 352
            +     D  N K+                      ++K IR ++G+V Q  E  LF  +
Sbjct: 63  TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122

Query: 353 IKDNINYG--KDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGT-QLSGGQKQRIA 409
           I+ +I +G    G S  E   A + A  AK+I+ +  GLD    +    +LSGGQK+R+A
Sbjct: 123 IEKDIIFGPVSMGVSKEE---AKKRA--AKYIELV--GLDESYLQRSPFELSGGQKRRVA 175

Query: 410 IARAILKDPRILLLDEATSALDAESERVVQEALDKIMIN-RTTVIVAHRLSTV 461
           +A  +  +P  L+ DE T+ LD +  + + E  D +    +T ++V H L  V
Sbjct: 176 LAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNV 228

Length = 305

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 80.7 bits (199), Expect = 4e-16
 Identities = 70/227 (30%), Positives = 115/227 (50%), Gaps = 45/227 (19%)

Query: 283 SLSIPSGTTAALVGQSGSGKS-TVISLIERFYDPQAGEVLIDG----------VNLKEF- 330
           S S+  G T A+VG+SGSGKS T ++L+ R  +   G V  D           + L E  
Sbjct: 36  SFSLQRGETLAIVGESGSGKSVTALALM-RLLEQAGGLVQCDKMLLRRRSRQVIELSEQS 94

Query: 331 --QLKWIRG-KIGLVSQEPV-----LFT--SSIKDNINYGKDGASIAEIMAAAELANAAK 380
             Q++ +RG  + ++ QEP+     +FT    I ++I   + GAS  E M  A+     +
Sbjct: 95  AAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ-GASREEAMVEAK-----R 148

Query: 381 FIDS--LPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE--- 435
            +D   +P+   T++  +  QLSGG +QR+ IA A+   P +L+ DE T+ALD   +   
Sbjct: 149 MLDQVRIPEA-QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQI 207

Query: 436 ----RVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477
               +V+Q+ +   +I      + H +  V   AD + V++QG+ VE
Sbjct: 208 LQLIKVLQKEMSMGVI-----FITHDMGVVAEIADRVLVMYQGEAVE 249

Length = 623

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 80.8 bits (199), Expect = 5e-16
 Identities = 59/190 (31%), Positives = 100/190 (52%), Gaps = 18/190 (9%)

Query: 293  ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS- 351
            A +G +G+GK+T +S++     P +G VL+ G ++ E  L  +R  +G+  Q  +LF   
Sbjct: 960  AFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI-ETNLDAVRQSLGMCPQHNILFHHL 1018

Query: 352  SIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIA 409
            ++ ++I +     G S  E    A+L   A   D+   GL     E    LSGG +++++
Sbjct: 1019 TVAEHILFYAQLKGRSWEE----AQLEMEAMLEDT---GLHHKRNEEAQDLSGGMQRKLS 1071

Query: 410  IARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADL--- 466
            +A A + D ++++LDE TS +D  S R + + L K    RT ++  H +     ADL   
Sbjct: 1072 VAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMD---EADLLGD 1128

Query: 467  -IAVIHQGKL 475
             IA+I QG+L
Sbjct: 1129 RIAIISQGRL 1138

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 76.0 bits (187), Expect = 5e-16
 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 11/171 (6%)

Query: 272 SRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ 331
            R G  +F+G S ++ +G    + G +GSGK+T++ ++     P AG VL++G  L   +
Sbjct: 9   ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68

Query: 332 LKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDT 391
               RG + L     +  T S+ +N+ +     S  ++  A        F D  P     
Sbjct: 69  DSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFED-RPVA--- 124

Query: 392 MVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEAL 442
                  QLS GQ++R+A+AR +L    + +LDE T+ALD        EA+
Sbjct: 125 -------QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAM 168

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 76.7 bits (190), Expect = 6e-16
 Identities = 44/186 (23%), Positives = 88/186 (47%), Gaps = 23/186 (12%)

Query: 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL-KWI 335
           Q   G SL +  G   AL+G++G+GK+T++  I     P++G ++ DG ++      +  
Sbjct: 17  QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERA 76

Query: 336 RGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLD---- 390
           R  I  V +   +F   ++++N+           ++ A    +       L +  +    
Sbjct: 77  RLGIAYVPEGRRIFPRLTVEENL-----------LLGAYARRDKEAQERDLEEVYELFPR 125

Query: 391 --TMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKI-MI 447
                 +    LSGG++Q +AIARA++  P++LLLDE +  L   + ++V+E  + I  +
Sbjct: 126 LKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIKEL 182

Query: 448 NRTTVI 453
            +   +
Sbjct: 183 RKEGGM 188

Length = 237

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score = 76.5 bits (189), Expect = 7e-16
 Identities = 57/226 (25%), Positives = 99/226 (43%), Gaps = 47/226 (20%)

Query: 276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA---GEVLIDGVNLKEFQL 332
            +I N  SL + SG   A++G SGSGK+T++  I    +      G++L +G   K  Q 
Sbjct: 20  ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQF 79

Query: 333 KWIRGKIGLVSQ-----------EPVLFTSSIK-DNINYGKDGASIAEIMAAAELANAAK 380
           +     +  V Q           E + +T+ ++    +         E +   +LA    
Sbjct: 80  QKC---VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLA---- 132

Query: 381 FIDSLPQGLDTMVG-EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQ 439
                     T +G      +SGG+++R++IA  +L DP++L+LDE TS LD+ +     
Sbjct: 133 ---------LTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFT----- 178

Query: 440 EALDKIMI-------NRTTVIVAH--RLSTVRNADLIAVIHQGKLV 476
            AL+ +         NR  ++  H  R    R  D I ++  G++V
Sbjct: 179 -ALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIV 223

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score = 77.7 bits (191), Expect = 7e-16
 Identities = 66/226 (29%), Positives = 112/226 (49%), Gaps = 23/226 (10%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           I+L  +  SY     + + N  S +I  G    L+G +G+GKST+  ++     P  G++
Sbjct: 5   IDLVGVSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVL---FTSSIKDNI-NYGKD-GASIAEIMAA-AE 374
            + G  +   + +  R  IG+V Q   L   FT  +++N+  +G+  G S  EI A    
Sbjct: 62  TVLGEPVPS-RARLARVAIGVVPQFDNLDPEFT--VRENLLVFGRYFGMSTREIEAVIPS 118

Query: 375 LANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 434
           L   A+    L    D  V      LSGG K+R+ +ARA++ DP++L+LDE T+ LD  +
Sbjct: 119 LLEFAR----LESKADVRV----ALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA 170

Query: 435 ERVVQEALDKIM-INRTTVIVAHRLSTV-RNADLIAVIHQG-KLVE 477
             ++ E L  ++   +T ++  H +    R  D + V+  G K+ E
Sbjct: 171 RHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAE 216

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 79.5 bits (196), Expect = 8e-16
 Identities = 58/220 (26%), Positives = 109/220 (49%), Gaps = 34/220 (15%)

Query: 280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI----DGVNLKEFQLKWI 335
           +  SL +  G    +VG SG+GK+T+  +I    +P +GEV +    + V++ +      
Sbjct: 301 DNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD-G 359

Query: 336 RGK----IGLVSQEPVLFT-SSIKDNIN----------YGKDGASIAEIMAAAELANAAK 380
           RG+    IG++ QE  L+   ++ DN+             +  A I   M   +   A +
Sbjct: 360 RGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEE 419

Query: 381 FIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQE 440
            +D  P            +LS G++ R+A+A+ ++K+PRI++LDE T  +D  ++  V  
Sbjct: 420 ILDKYPD-----------ELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTH 468

Query: 441 ALDK--IMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477
           ++ K    + +T +IV+H +  V +  D  A++  GK+V+
Sbjct: 469 SILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVK 508

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional

 Score = 78.0 bits (193), Expect = 9e-16
 Identities = 60/181 (33%), Positives = 89/181 (49%), Gaps = 26/181 (14%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           ++L+ +  SY      Q+  G  L +  G    LVG SG GKST++ ++       +GE+
Sbjct: 4   LKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEI 61

Query: 321 LIDG--VNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYG-KD-GASIAEIMA---- 371
            I G  VN  E      R  I +V Q   L+   S+++N+ YG K  G   AEI      
Sbjct: 62  WIGGRVVNELEPAD---RD-IAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAE 117

Query: 372 AAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 431
           AA +      +D  P+           +LSGGQ+QR+A+ RAI+++P + L DE  S LD
Sbjct: 118 AARILELEPLLDRKPR-----------ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166

Query: 432 A 432
           A
Sbjct: 167 A 167

Length = 356

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 76.1 bits (188), Expect = 1e-15
 Identities = 60/229 (26%), Positives = 107/229 (46%), Gaps = 46/229 (20%)

Query: 269 SYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLK 328
           SY  R   ++ N  SL + SG    L+G +G+GK+T   +I     P +G++L+D  ++ 
Sbjct: 13  SYKKR---KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDIT 69

Query: 329 EFQL-KWIRGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLP 386
           +  + K  R  IG + QE  +F   +++DNI            MA  E+           
Sbjct: 70  KLPMHKRARLGIGYLPQEASIFRKLTVEDNI------------MAVLEIREKDLKKAERK 117

Query: 387 QGLDTMVGE----H-----GTQLSGGQKQRIAIARAILKDPRILLLDEATSALD----AE 433
           + LD ++ E    H        LSGG+++R+ IARA+  +P+ +LLDE  + +D     +
Sbjct: 118 EELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVID 177

Query: 434 SERVVQEALDK---IMIN----RTTVIVAHRLSTVRNADLIAVIHQGKL 475
            +R+++   D+   ++I     R T+ +  R           +I  GK+
Sbjct: 178 IQRIIKHLKDRGIGVLITDHNVRETLDICDR---------AYIISDGKV 217

Length = 243

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 73.4 bits (181), Expect = 2e-15
 Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 3/83 (3%)

Query: 262 ELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 321
           E++++ F Y  R      +  SL++ +G   ALVG +GSGKST++  I     P +GE+L
Sbjct: 1   EIENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57

Query: 322 IDGVNLKEFQLKWIRGKIGLVSQ 344
           IDG ++ +  L+ +R +IG V Q
Sbjct: 58  IDGKDIAKLPLEELRRRIGYVPQ 80

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 75.3 bits (186), Expect = 2e-15
 Identities = 56/227 (24%), Positives = 111/227 (48%), Gaps = 44/227 (19%)

Query: 269 SYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLK 328
            Y  R   ++ NG SLS+  G    L+G +G+GK+T   +I     P +G++L+DG ++ 
Sbjct: 9   RYGKR---KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDIT 65

Query: 329 EFQL-KWIRGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELAN-----AAKF 381
           +  + K  R  IG + QE  +F   ++++NI            +A  E+         + 
Sbjct: 66  KLPMHKRARLGIGYLPQEASIFRKLTVEENI------------LAVLEIRGLSKKEREEK 113

Query: 382 IDSLPQ--GLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD----AESE 435
           ++ L +   +  +     + LSGG+++R+ IARA+  +P+ LLLDE  + +D     + +
Sbjct: 114 LEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQ 173

Query: 436 RVVQEALDK---IMIN----RTTVIVAHRLSTVRNADLIAVIHQGKL 475
           ++++   D+   ++I     R T+ +  R           +I++GK+
Sbjct: 174 KIIKILKDRGIGVLITDHNVRETLSITDR---------AYIIYEGKV 211

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 76.7 bits (189), Expect = 2e-15
 Identities = 52/208 (25%), Positives = 96/208 (46%), Gaps = 27/208 (12%)

Query: 281 GFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340
           G +  +  G     +G +G+GK+T I ++     P +G   + G ++   + + +R  IG
Sbjct: 11  GVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIG 69

Query: 341 LVSQEPVLFTS-SIKDNIN-----YG--KDGAS--IAEIMAAAELANAAKFIDSLPQGLD 390
           +V Q   +    + ++N+      YG  KD A     E++   EL  AA          D
Sbjct: 70  IVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAA----------D 119

Query: 391 TMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRT 450
             VG      SGG ++R+ IA +++  P +L LDE T+ LD  + R + + +  +     
Sbjct: 120 RPVG----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGV 175

Query: 451 TVIV-AHRLSTVRN-ADLIAVIHQGKLV 476
           T+++  H +       D IA+I  G+++
Sbjct: 176 TILLTTHYMEEADKLCDRIAIIDHGRII 203

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 78.2 bits (193), Expect = 2e-15
 Identities = 68/228 (29%), Positives = 111/228 (48%), Gaps = 32/228 (14%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           +  + I   Y    G ++  G   ++ +G   AL+G +G+GKST++ +I     P +G +
Sbjct: 12  LCARSISKQYS---GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL 68

Query: 321 LIDGVNL------KEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAA 373
            I G         K  QL      I LV QEP+LF + S+K+NI +G      +      
Sbjct: 69  EIGGNPCARLTPAKAHQL-----GIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQ 123

Query: 374 ELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD-A 432
            LA     +D     LD+  G     L    +Q + I R +++D RIL+LDE T++L  A
Sbjct: 124 LLAALGCQLD-----LDSSAG----SLEVADRQIVEILRGLMRDSRILILDEPTASLTPA 174

Query: 433 ESERV---VQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLV 476
           E+ER+   ++E L +       V ++H+L  +R  AD I+V+  G + 
Sbjct: 175 ETERLFSRIRELLAQ---GVGIVFISHKLPEIRQLADRISVMRDGTIA 219

Length = 510

>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional

 Score = 75.0 bits (184), Expect = 3e-15
 Identities = 62/220 (28%), Positives = 101/220 (45%), Gaps = 47/220 (21%)

Query: 282 FSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGL 341
            ++ IP G   A++G +G GKST++  + R   P  G V +DG +++ +  K +  +IGL
Sbjct: 26  LTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGL 85

Query: 342 VSQEPV--------------------LFTSSIKDNINYGKDGASIAEIMAAAELANAAKF 381
           ++Q                       LFT   K+      D  ++ + M A  + + A  
Sbjct: 86  LAQNATTPGDITVQELVARGRYPHQPLFTRWRKE------DEEAVTKAMQATGITHLAD- 138

Query: 382 IDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEA 441
                Q +DT        LSGGQ+QR  IA  + ++  I+LLDE T+ LD   +  + E 
Sbjct: 139 -----QSVDT--------LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLEL 185

Query: 442 LDKIMINR----TTVIVAHRLS-TVRNADLIAVIHQGKLV 476
           L +  +NR    T   V H L+   R A  +  + +GK+V
Sbjct: 186 LSE--LNREKGYTLAAVLHDLNQACRYASHLIALREGKIV 223

Length = 265

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 74.9 bits (185), Expect = 3e-15
 Identities = 62/229 (27%), Positives = 110/229 (48%), Gaps = 21/229 (9%)

Query: 262 ELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKST---VISLIERFYDPQAG 318
           E+KD++        ++I  G +L++  G   A++G +GSGKST    I    + Y+   G
Sbjct: 5   EIKDLHVE--VEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK-YEVTEG 61

Query: 319 EVLIDGVNLKEFQL-KWIRGKIGLVSQEPVLFTS-SIKDNINYG-----KDGASIAEIMA 371
           E+L DG ++ E    +  R  I L  Q PV     +  D +             + E + 
Sbjct: 62  EILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIK 121

Query: 372 AAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 431
             EL   A+ +    + L+  V E     SGG+K+R  I + +L +P++ +LDE  S LD
Sbjct: 122 --ELKEKAELLGLDEEFLERYVNE---GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD 176

Query: 432 AESERVVQEALDKIM-INRTTVIVAH--RLSTVRNADLIAVIHQGKLVE 477
            ++ ++V E ++ +    R  +I+ H  RL      D + V++ G++V+
Sbjct: 177 IDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVK 225

Length = 251

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 74.1 bits (183), Expect = 4e-15
 Identities = 62/235 (26%), Positives = 96/235 (40%), Gaps = 33/235 (14%)

Query: 253 KLDDIRGDIELKDIYFSYPSRPGE-QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIER 311
                      K          GE       S  +P G    L+G++G+GKST++ L+  
Sbjct: 11  PTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAG 70

Query: 312 FYDPQAGEVLIDGVNLKEFQLKWIRGKIGL-VSQEPVLFTSSIKDNIN-----YGKDGAS 365
            Y P +G V + G      ++  +   +GL     P L   + ++NI       G     
Sbjct: 71  IYPPDSGTVTVRG------RVSSL---LGLGGGFNPEL---TGRENIYLNGRLLGLSRKE 118

Query: 366 IAEIMAA-AELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLD 424
           I E +    E +    FID LP      V       S G K R+A A A   +P ILL+D
Sbjct: 119 IDEKIDEIIEFSELGDFID-LP------VKT----YSSGMKARLAFAIATALEPDILLID 167

Query: 425 EATSALDAESERVVQEALDKIMINRTTVI-VAHRLSTVRN-ADLIAVIHQGKLVE 477
           E  +  DA  +   Q  L +++    TVI V+H  S+++   D   V+ +GK+  
Sbjct: 168 EVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRF 222

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 74.5 bits (184), Expect = 4e-15
 Identities = 60/216 (27%), Positives = 97/216 (44%), Gaps = 34/216 (15%)

Query: 280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG---VNLKEFQLKWIR 336
           N  SL +  G    ++G +G+GK+T++ +I     P  G VL  G     L E Q+   R
Sbjct: 19  NDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQI--AR 76

Query: 337 GKIGLVSQEPVLFTS-SIKDN--------------INYGKDGASIAEIMAAAELANAAKF 381
             IG   Q+P +F + ++ +N              + +         I    E    A  
Sbjct: 77  AGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADE 136

Query: 382 IDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-DAESERVVQE 440
                   D + G     LS GQKQ + I   +++DP++LLLDE  + + D E+E+   E
Sbjct: 137 -------ADRLAGL----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTA-E 184

Query: 441 ALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKL 475
            L  +    + V+V H +  VR+ AD + V+HQG +
Sbjct: 185 LLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSV 220

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score = 77.0 bits (190), Expect = 5e-15
 Identities = 51/212 (24%), Positives = 91/212 (42%), Gaps = 41/212 (19%)

Query: 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ----AGEVLIDGVNLKEFQL 332
            +    S     G   A++G SG+GK+T+++ +  F  P+    +G VL++G+ +   ++
Sbjct: 39  HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALA-FRSPKGVKGSGSVLLNGMPIDAKEM 97

Query: 333 KWIRGKI--------GLVSQEPVLFTSSIKDNINYGKDG--ASIAEIMAAAELANAAKFI 382
           + I   +         L  +E ++F + ++      K      + E++ A  L   A   
Sbjct: 98  RAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCA--- 154

Query: 383 DSLPQGLDTMVGEHGTQ--LSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQE 440
                  +T +G  G    LSGG+++R+A A  +L DP +L  DE TS LD+     V +
Sbjct: 155 -------NTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQ 207

Query: 441 ALDKIMINRTTVIVAHRLSTVRNADLIAVIHQ 472
            L  +     T+I                IHQ
Sbjct: 208 VLKGLAQKGKTIIC--------------TIHQ 225

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional

 Score = 74.2 bits (183), Expect = 7e-15
 Identities = 67/224 (29%), Positives = 99/224 (44%), Gaps = 46/224 (20%)

Query: 283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV--------LIDGVNLKEFQLKW 334
           S  +  G    +VG+SGSGK+T+++ +     P AGEV        L D   L E + + 
Sbjct: 26  SFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRR 85

Query: 335 I-RGKIGLVSQEP---VLFTSSIKDNI----------NYGKDGASIAEIMAAAELANAAK 380
           + R + G V Q P   +    S   NI          +YG   A+  + +   E+   A 
Sbjct: 86  LLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEID--AA 143

Query: 381 FIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQE 440
            ID LP           T  SGG +QR+ IAR ++  PR++ +DE T  LD      VQ 
Sbjct: 144 RIDDLP-----------TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVS----VQA 188

Query: 441 ALDKIMINRTT------VIVAHRLSTVRN-ADLIAVIHQGKLVE 477
            L  ++           VIV H L+  R  A  + V+ QG++VE
Sbjct: 189 RLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVE 232

Length = 258

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 72.9 bits (180), Expect = 1e-14
 Identities = 61/231 (26%), Positives = 108/231 (46%), Gaps = 33/231 (14%)

Query: 262 ELKDIYFSYPSRPGE-QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           E+ ++   Y    G+  I  G SL +P G    ++G++G GK+T++  +      ++G +
Sbjct: 2   EVSNLNVYY----GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSI 57

Query: 321 LIDGVN---LKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELA 376
            +DG +   L   +    R  I  V Q   +F   ++++N+  G            A L 
Sbjct: 58  RLDGEDITKLPPHER--ARAGIAYVPQGREIFPRLTVEENLLTG-----------LAALP 104

Query: 377 NAAKFID----SLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD- 431
             ++ I      L   L  M+G  G  LSGGQ+Q++AIARA++  P++LLLDE T  +  
Sbjct: 105 RRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQP 164

Query: 432 ---AESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVEK 478
               +  RV++    +  +    ++V   L   R  AD   V+ +G++V  
Sbjct: 165 SIIKDIGRVIRRLRAEGGM--AILLVEQYLDFARELADRYYVMERGRVVAS 213

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 71.4 bits (176), Expect = 1e-14
 Identities = 31/59 (52%), Positives = 41/59 (69%), Gaps = 4/59 (6%)

Query: 400 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVI-VAHR 457
           LSGG++QR+A AR +L  P+ + LDEATSALD ESE  + + L ++ I   TVI V HR
Sbjct: 92  LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGI---TVISVGHR 147

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 71.8 bits (177), Expect = 1e-14
 Identities = 56/211 (26%), Positives = 97/211 (45%), Gaps = 43/211 (20%)

Query: 275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGVNLKEF-- 330
           G++I  G +L+I  G   AL+G +GSGKST+   I     Y+   GE+L  G ++ +   
Sbjct: 12  GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPP 71

Query: 331 QLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLD 390
           + +   G I L  Q P                G   A+            F+  + +G  
Sbjct: 72  EERARLG-IFLAFQYPPEIP------------GVKNAD------------FLRYVNEGF- 105

Query: 391 TMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INR 449
                     SGG+K+R  I + +L +P + +LDE  S LD ++ R+V E ++K+    +
Sbjct: 106 ----------SGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGK 155

Query: 450 TTVIVAH--RLSTVRNADLIAVIHQGKLVEK 478
           + +I+ H  RL      D + V++ G++V+ 
Sbjct: 156 SVLIITHYQRLLDYIKPDRVHVLYDGRIVKS 186

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 75.7 bits (186), Expect = 2e-14
 Identities = 70/243 (28%), Positives = 121/243 (49%), Gaps = 38/243 (15%)

Query: 261 IELKDIYFSYPSRPGEQIFN----------GFSLSIPSGTTAALVGQSGSGKSTVISLIE 310
           ++++++   +P R G  + N            S  +  G T +LVG+SGSGKST    + 
Sbjct: 314 LQVRNLVTRFPLRSG--LLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALL 371

Query: 311 RFYDPQAGEVLIDGV---NLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIA 367
           R  + Q GE++ +G     L   +L+ +R  I  + Q+P    +S+      G    SI 
Sbjct: 372 RLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPY---ASLDPRQTVGD---SIM 425

Query: 368 EIMAAAELAN---AAKFIDSLPQGLDTMVGEHG----TQLSGGQKQRIAIARAILKDPRI 420
           E +    L     AA  +  L + +  ++ EH      + SGGQ+QRI IARA+  +P++
Sbjct: 426 EPLRVHGLLPGKAAAARVAWLLERVG-LLPEHAWRYPHEFSGGQRQRICIARALALNPKV 484

Query: 421 LLLDEATSALDAE-SERVVQEALDKIMINRTTVI----VAHRLSTV-RNADLIAVIHQGK 474
           ++ DEA SALD     +++   LD   + R   I    ++H ++ V R +  +AV++ G+
Sbjct: 485 IIADEAVSALDVSIRGQIINLLLD---LQRDFGIAYLFISHDMAVVERISHRVAVMYLGQ 541

Query: 475 LVE 477
           +VE
Sbjct: 542 IVE 544

Length = 623

>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter

 Score = 75.4 bits (185), Expect = 2e-14
 Identities = 74/264 (28%), Positives = 115/264 (43%), Gaps = 19/264 (7%)

Query: 225 AAGQAAAYKLFEAIER----KPLIDAYDSNGVKLDDIR---GDIELKDIYFSYPSRPGEQ 277
           A  Q A  +L +  ER    +P ++  D++ V L         IELKD++ +  +  G +
Sbjct: 295 AQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSE 354

Query: 278 IFN--GFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI 335
            F      L I  G    +VG++G GKST+  L    Y PQ GE+L+DG  +        
Sbjct: 355 GFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDY 414

Query: 336 RGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGE 395
           R     +  +  LF   I  +        +  + +   E+A+  K  D    G  T    
Sbjct: 415 RDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDG---GFSTT--- 468

Query: 396 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEAL--DKIMINRTTVI 453
             T LS GQ++R+A+  A L+D  ILL DE  +  D   +R   E L  D     +T +I
Sbjct: 469 --TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIII 526

Query: 454 VAHRLSTVRNADLIAVIHQGKLVE 477
           ++H       AD I  +  G +V+
Sbjct: 527 ISHDDQYFELADQIIKLAAGCIVK 550

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 74.5 bits (183), Expect = 2e-14
 Identities = 57/228 (25%), Positives = 103/228 (45%), Gaps = 27/228 (11%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           I++ D+   +       + +G  LS+  G+   LVG +G+GK+T++  I     P AG V
Sbjct: 4   IDVSDLSVEFGDTT---VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTV 60

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVL-FTSSIKDNINYGK----------DGASIAEI 369
           L+ G +++    +    ++  V Q+  L F   ++  +  G+               A +
Sbjct: 61  LVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAV 120

Query: 370 MAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 429
             A E    A+F D              T LSGG++QR+ +ARA+ +   +LLLDE T++
Sbjct: 121 ERAMERTGVAQFAD-----------RPVTSLSGGERQRVLLARALAQATPVLLLDEPTAS 169

Query: 430 LDAESE-RVVQEALDKIMINRTTVIVAHRLS-TVRNADLIAVIHQGKL 475
           LD   + R ++     +   +T V   H L    R  D + ++  G++
Sbjct: 170 LDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRV 217

Length = 402

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 72.6 bits (178), Expect = 2e-14
 Identities = 63/234 (26%), Positives = 99/234 (42%), Gaps = 41/234 (17%)

Query: 269 SYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV---LIDGV 325
           SY    G       S  +  G    +VG+SGSGKST++  +     P  G     +  G 
Sbjct: 12  SYGGGKG---CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGA 68

Query: 326 NLKEFQL------KWIRGKIGLVSQEP---VLFTSSIKDNI----------NYGKDGASI 366
            L+ +QL      + +R + G V Q P   +    S   NI          +YG   A+ 
Sbjct: 69  ELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATA 128

Query: 367 AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 426
            + +   E+      ID LP              SGG +QR+ IAR ++  PR++ +DE 
Sbjct: 129 QDWLEEVEIDPTR--IDDLP-----------RAFSGGMQQRLQIARNLVTRPRLVFMDEP 175

Query: 427 TSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVR-NADLIAVIHQGKLVE 477
           T  LD   +  + + L  ++  +    +IV H L   R  A  + V+ QG++VE
Sbjct: 176 TGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVE 229

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional

 Score = 71.7 bits (176), Expect = 3e-14
 Identities = 63/200 (31%), Positives = 92/200 (46%), Gaps = 31/200 (15%)

Query: 275 GEQ---IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNL---K 328
           GE    I  G  L +  G T AL+G+SGSGKST+++++    D  +GEV + G  L    
Sbjct: 19  GEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMD 78

Query: 329 EFQLKWIRGK-IGLVSQEPVLF-TSSIKDNINY------GKDGASIAEIMAAAELANAAK 380
           E     +R K +G V Q  +L  T +  +N+             S     A  E     K
Sbjct: 79  EEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGK 138

Query: 381 FIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQE 440
            +D LP            QLSGG++QR+A+ARA    P +L  DE T  LD ++   + +
Sbjct: 139 RLDHLP-----------AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIAD 187

Query: 441 ALDKIMINR----TTVIVAH 456
            L    +NR    T ++V H
Sbjct: 188 LL--FSLNREHGTTLILVTH 205

Length = 228

>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein

 Score = 74.0 bits (182), Expect = 3e-14
 Identities = 60/216 (27%), Positives = 102/216 (47%), Gaps = 29/216 (13%)

Query: 280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI-------DGVNLKEFQL 332
           +  SL I  G    L+G SGSGKST++  +        G VL+       D  N     L
Sbjct: 41  HNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATL 100

Query: 333 KWIRGK-IGLVSQEPVLFT-SSIKDNINYGKDGASIAE------IMAAAELANAAKFIDS 384
           + +R   + +V Q+  L    ++++N+ +G +   + +      +    EL         
Sbjct: 101 RRLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLELVG------- 153

Query: 385 LPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDK 444
           L Q  D   GE    LSGG +QR+ +ARA   +  ILL+DE  SALD      +Q+ L +
Sbjct: 154 LAQWADRKPGE----LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLE 209

Query: 445 IM--INRTTVIVAHRL-STVRNADLIAVIHQGKLVE 477
           +   + +T V V+H L   ++  + IA++  G++++
Sbjct: 210 LQSKLKKTIVFVSHDLDEALKIGNRIAIMEGGRIIQ 245

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382

>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 72.3 bits (177), Expect = 3e-14
 Identities = 59/219 (26%), Positives = 100/219 (45%), Gaps = 16/219 (7%)

Query: 265 DIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 324
           D++F Y     E +  G +L         LVG +G GKST+   +     PQ G VL  G
Sbjct: 6   DLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQG 62

Query: 325 --VNLKEFQLKWIRGKIGLVSQEP--VLFTSSIKDNINYGKDGASIAEIMAAAELANAAK 380
             ++  +  L  +R ++  V Q+P   +F + I  +I +      + E      +  A  
Sbjct: 63  KPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALT 122

Query: 381 FIDSLPQGLDTMVGEHGTQ-LSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQ 439
            +D+  Q           Q LS GQK+R+AIA A++   R LLLDE T+ LD      + 
Sbjct: 123 LVDA--QHFR----HQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMI 176

Query: 440 EALDKIMIN-RTTVIVAHRLSTVRN-ADLIAVIHQGKLV 476
             + +I+      +I +H +  +   +D + V+ QG+++
Sbjct: 177 AIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQIL 215

Length = 271

>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional

 Score = 72.4 bits (178), Expect = 5e-14
 Identities = 67/241 (27%), Positives = 121/241 (50%), Gaps = 31/241 (12%)

Query: 261 IELKDIYFSYPSRPGEQIF----------NGFSLSIPSGTTAALVGQSGSGKSTVISLIE 310
           +E+ D+   +  + G+Q F          +G +L +  G T  +VG+SG GKST    I 
Sbjct: 9   LEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAII 68

Query: 311 RFYDPQAGEVLIDGVNL---KEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIA 367
                  GEV   G +L   K+ + + +R  I ++ Q+P+   +S+   +  G+    IA
Sbjct: 69  GLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPL---ASLNPRMTIGE---IIA 122

Query: 368 EI-------MAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420
           E        ++  E+ +  K +      L  ++  +  + SGGQ QRI IARA++ +P++
Sbjct: 123 EPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKL 182

Query: 421 LLLDEATSALDAESE-RVVQ--EALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLV 476
           ++ DE  SALD   + +VV   + L + M   + + +AH L+ V++ +D + V++ G  V
Sbjct: 183 IICDEPVSALDVSIQAQVVNLLQQLQREM-GLSLIFIAHDLAVVKHISDRVLVMYLGHAV 241

Query: 477 E 477
           E
Sbjct: 242 E 242

Length = 331

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 70.9 bits (174), Expect = 6e-14
 Identities = 57/191 (29%), Positives = 82/191 (42%), Gaps = 45/191 (23%)

Query: 278 IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI-------DGVNLKEF 330
           +    SLS+ +G    L G SGSGKST++  +   Y P  G++L+       D V  +  
Sbjct: 26  VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85

Query: 331 QLKWIRGK-IGLVSQ---------------EPVLFTSSIKDNINYGKDGASIAEIMAAAE 374
           ++  +R   IG VSQ               EP+L                 +A   AA  
Sbjct: 86  EVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR----------GVPREVARAKAADL 135

Query: 375 LA--NAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 432
           L   N  + + SL               SGG++QR+ IAR  + D  ILLLDE T++LDA
Sbjct: 136 LTRLNLPERLWSLAP----------ATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDA 185

Query: 433 ESERVVQEALD 443
            +  VV E + 
Sbjct: 186 TNRAVVVELIR 196

Length = 235

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 72.1 bits (177), Expect = 6e-14
 Identities = 61/225 (27%), Positives = 114/225 (50%), Gaps = 28/225 (12%)

Query: 261 IELKDIYFSYPSRPGEQ-IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 319
           I+ +++   Y    G++ + +G S  +  G    L+G +G+GK+T + ++     P AG 
Sbjct: 8   IDFRNVEKRY----GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGS 63

Query: 320 VLIDGVNLKEFQLKWIRGKIGLVSQEPVL---FTSSIKDNIN-----YGKDGASIAEIMA 371
           + + G  +   + +  R ++G+V Q   L   FT  +++N+      +G   A+   ++ 
Sbjct: 64  ISLCGEPVPS-RARHARQRVGVVPQFDNLDPDFT--VRENLLVFGRYFGLSAAAARALVP 120

Query: 372 AAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 431
              L   AK    L    D  VGE    LSGG K+R+ +ARA++ DP +L+LDE T+ LD
Sbjct: 121 P--LLEFAK----LENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLD 170

Query: 432 AESERVVQEALDKIMIN-RTTVIVAHRLSTV-RNADLIAVIHQGK 474
            ++  ++ E L  ++   +T ++  H +    R  D + VI +G+
Sbjct: 171 PQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGR 215

Length = 306

>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

 Score = 73.3 bits (180), Expect = 7e-14
 Identities = 60/222 (27%), Positives = 102/222 (45%), Gaps = 21/222 (9%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           +EL+++ F+Y            +L+I  G    L+G +GSGKST+  L+   Y PQ+GE+
Sbjct: 323 LELRNVRFAYQ--DNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAK 380
           L+DG  +   QL+  R     V  +  LF   +      G +G         A      K
Sbjct: 381 LLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEG--------KASPQLIEK 426

Query: 381 FIDSLPQGLDTMVGEHG---TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERV 437
           ++  L     T + +      +LS GQK+R+A+  A+L++  IL+LDE  +  D    R 
Sbjct: 427 WLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRRE 486

Query: 438 VQEALDKIM--INRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
             + L  ++    +T   ++H      +AD +  +  G+L E
Sbjct: 487 FYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528

Length = 546

>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed

 Score = 70.5 bits (173), Expect = 1e-13
 Identities = 51/206 (24%), Positives = 101/206 (49%), Gaps = 31/206 (15%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           + L+++  S+  R   ++ +  SL +  G    L+G +G+GKST++ ++     P  G +
Sbjct: 5   VSLENVSVSFGQR---RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI 61

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS---SIKDNINYGKDGASIAEIMAAAELAN 377
                  +  +L+     IG V Q+  L T+   ++   +   + G    +I+ A +   
Sbjct: 62  K------RNGKLR-----IGYVPQKLYLDTTLPLTVNRFLRL-RPGTKKEDILPALKRVQ 109

Query: 378 AAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERV 437
           A   ID+  Q           +LSGG+ QR+ +ARA+L  P++L+LDE T  +D   +  
Sbjct: 110 AGHLIDAPMQ-----------KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVA 158

Query: 438 VQEALDKIM--INRTTVIVAHRLSTV 461
           + + +D++   ++   ++V+H L  V
Sbjct: 159 LYDLIDQLRRELDCAVLMVSHDLHLV 184

Length = 251

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 70.1 bits (172), Expect = 1e-13
 Identities = 57/203 (28%), Positives = 100/203 (49%), Gaps = 15/203 (7%)

Query: 281 GFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340
           G S +I  G     +G +G+GK+T + ++     P +GEV + G+   + + K++R +IG
Sbjct: 39  GISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLR-RIG 97

Query: 341 LV--SQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQG--LDTMVGEH 396
           +V   +  + +   + D+         I ++  A       +  + L     LDT V   
Sbjct: 98  VVFGQKTQLWWDLPVIDSFYLLAA---IYDLPPARFKKRLDELSELLDLEELLDTPV--- 151

Query: 397 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINR-TTVIV- 454
             QLS GQ+ R  IA A+L +P IL LDE T  LD  ++  ++  L +    R TTV++ 
Sbjct: 152 -RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLT 210

Query: 455 AHRLSTV-RNADLIAVIHQGKLV 476
           +H +  +   A  + VI +G+L+
Sbjct: 211 SHYMKDIEALARRVLVIDKGRLL 233

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 69.8 bits (171), Expect = 1e-13
 Identities = 59/191 (30%), Positives = 96/191 (50%), Gaps = 26/191 (13%)

Query: 283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEF----QLKWIRGK 338
           S SI  G   A+VG SGSGKST++ L+     P +G+V+ +G  + +     + +    K
Sbjct: 29  SFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQK 88

Query: 339 IGLVSQEPVL---FTSSIKDNINY-----GKDGASIAEIMAAAELANAAKFIDSLPQGLD 390
           +G + Q   L   FT+   +N+        K  A I     A E+  A         GL+
Sbjct: 89  LGFIYQFHHLLPDFTAL--ENVAMPLLIGKKKPAEINS--RALEMLAAV--------GLE 136

Query: 391 TMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRT 450
                  ++LSGG++QR+AIARA++ +PR++L DE T  LDA +   + + L ++   + 
Sbjct: 137 HRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQG 196

Query: 451 T--VIVAHRLS 459
           T  ++V H L 
Sbjct: 197 TAFLVVTHDLQ 207

Length = 233

>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 68.2 bits (168), Expect = 2e-13
 Identities = 40/207 (19%), Positives = 84/207 (40%), Gaps = 50/207 (24%)

Query: 279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ-LKWIRG 337
               S  + +G    + G  G+G++ +   +     P +GE+ +DG  +        IR 
Sbjct: 16  VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75

Query: 338 KIGLVSQEP----VLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMV 393
            I  V ++     ++   S+ +NI                          +L        
Sbjct: 76  GIAYVPEDRKREGLVLDLSVAENI--------------------------ALSS------ 103

Query: 394 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVI 453
                 LSGG +Q++ +AR + +DPR+L+LDE T  +D  ++  +   + ++      V+
Sbjct: 104 -----LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVL 158

Query: 454 VAHRLST-----VRNADLIAVIHQGKL 475
           +   +S+     +   D I V+++G++
Sbjct: 159 L---ISSELDELLGLCDRILVMYEGRI 182

This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 68.9 bits (169), Expect = 2e-13
 Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 28/176 (15%)

Query: 272 SRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ 331
            R    +F+  S ++ +G    + G +G+GK+T++ ++     P AGEV   G  ++  +
Sbjct: 11  ERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR 70

Query: 332 ------LKWIRGKIGLVSQ----EPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKF 381
                 L ++  + G+ ++    E + F               + A I  A      A  
Sbjct: 71  ESYHQALLYLGHQPGIKTELTALENLHFWQRFHG-------SGNAATIWEALAQVGLAGL 123

Query: 382 IDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERV 437
            D LP G          QLS GQ++R+A+AR  L    + +LDE  +ALD E   +
Sbjct: 124 ED-LPVG----------QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVAL 168

Length = 209

>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 57/229 (24%), Positives = 93/229 (40%), Gaps = 38/229 (16%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
             LK +                S  I  G    ++G +G+GKST++ LI   Y P +G+V
Sbjct: 25  KRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV 84

Query: 321 LIDGVNLKEFQLKWIRGKIGL-VSQEPVLFTSSIKDNIN-----YGKDGASIAEIM-AAA 373
            + G      ++  +   I L    +P L   + ++NI       G     I E +    
Sbjct: 85  KVTG------KVAPL---IELGAGFDPEL---TGRENIYLRGLILGLTRKEIDEKVDEII 132

Query: 374 ELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 433
           E A    FID   Q + T         S G   R+A + A   +P ILLLDE  +  DA 
Sbjct: 133 EFAELGDFID---QPVKT--------YSSGMYARLAFSVATHVEPDILLLDEVLAVGDA- 180

Query: 434 SERVVQEALDKIM----INRTTVIVAHRLSTVRNA-DLIAVIHQGKLVE 477
                ++ L+++      N+T V+V+H L  ++   D    +  G++  
Sbjct: 181 --AFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRM 227

Length = 249

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 69.2 bits (170), Expect = 3e-13
 Identities = 59/212 (27%), Positives = 102/212 (48%), Gaps = 31/212 (14%)

Query: 282 FSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL-KWIRGKIG 340
            S  + +G    LVG +G+GKST+++ +     P +G +   G  L+ +   +  R +  
Sbjct: 15  LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHRAY 73

Query: 341 LVSQEPVLFTSSIKDNIN-YGKDGASIAEIMAA-AELANAAKFIDSLPQGLDTMVGEHGT 398
           L  Q+   F   +   +  +  D      + +A  E+A A    D L + +         
Sbjct: 74  LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSV--------N 125

Query: 399 QLSGGQKQRIAIARAILK-DPRI------LLLDEATSALDAESERVVQE-ALDKIM---- 446
           QLSGG+ QR+ +A  +L+  P I      LLLDE  ++LD     V Q+ ALD+++    
Sbjct: 126 QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD-----VAQQAALDRLLSELC 180

Query: 447 -INRTTVIVAHRLS-TVRNADLIAVIHQGKLV 476
                 V+ +H L+ T+R+AD + ++ QGKL+
Sbjct: 181 QQGIAVVMSSHDLNHTLRHADRVWLLKQGKLL 212

Length = 248

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 71.1 bits (175), Expect = 3e-13
 Identities = 62/224 (27%), Positives = 105/224 (46%), Gaps = 38/224 (16%)

Query: 274 PGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ-- 331
           PG +  +  S    +G   AL+G++G+GKST++ ++   Y P AG +LIDG  ++ F   
Sbjct: 15  PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMR-FAST 73

Query: 332 LKWIRGKIGLVSQE----PVLFTSSIKDNINYG---------KDGASIAEIMAAAELANA 378
              +   + ++ QE    P +   ++ +N+  G                E  A  +L + 
Sbjct: 74  TAALAAGVAIIYQELHLVPEM---TVAENLYLGQLPHKGGIVNRRLLNYE--AREQLEHL 128

Query: 379 AKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA-ESE-- 435
              ID      DT +      LS GQ+Q + IA+A+ ++ R++  DE TS+L A E E  
Sbjct: 129 GVDIDP-----DTPLKY----LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQL 179

Query: 436 -RVVQEALDKIMINRTTVIVAHRLSTV-RNADLIAVIHQGKLVE 477
            RV++E   +    R  + V+HR+  +    D I V   G+ V 
Sbjct: 180 FRVIRELRAE---GRVILYVSHRMEEIFALCDAITVFKDGRYVA 220

Length = 501

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 67.8 bits (166), Expect = 4e-13
 Identities = 47/174 (27%), Positives = 78/174 (44%), Gaps = 13/174 (7%)

Query: 272 SRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ 331
           SR    +F G S ++ +G    + G +G GK+T++ ++     P +GEV  +G  L E +
Sbjct: 9   SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68

Query: 332 LKWIRGKIGLVSQEPVLFTSSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGL 389
            +  R  + L     +    S  +N+++     G +   I  A        F D LP   
Sbjct: 69  DEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFED-LPAA- 126

Query: 390 DTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALD 443
                    QLS GQ++R+A+AR  L    + +LDE T+ALD     ++   L 
Sbjct: 127 ---------QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLR 171

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 68.6 bits (168), Expect = 5e-13
 Identities = 66/246 (26%), Positives = 101/246 (41%), Gaps = 49/246 (19%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           + +  +   Y    G       S  +  G    +VG+SGSGK+T++  I     P AG V
Sbjct: 7   LSVSGLSKLYGPGKG---CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTV 63

Query: 321 ---LIDGVNLKEFQL------KWIRGKIGLVSQEP---VLFTSSIKDNI----------N 358
              + DG     + +      + +R + G V Q P   +    S   NI          +
Sbjct: 64  TYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARH 123

Query: 359 YGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDP 418
           YG   A   + +   E+      ID LP              SGG +QR+ IAR ++  P
Sbjct: 124 YGNIRAEAQDWLEEVEID--LDRIDDLP-----------RTFSGGMQQRLQIARNLVTRP 170

Query: 419 RILLLDEATSALDAESERVVQEALDKIM------INRTTVIVAHRLSTVR-NADLIAVIH 471
           R++ +DE T  LD      VQ  L  ++      +    VIV H L+  R  AD + V+ 
Sbjct: 171 RLVFMDEPTGGLDVS----VQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMK 226

Query: 472 QGKLVE 477
           QG++VE
Sbjct: 227 QGQVVE 232

Length = 258

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 51/204 (25%), Positives = 102/204 (50%), Gaps = 20/204 (9%)

Query: 280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339
           +  S  +P G    L+G +G+GK+T   +I    +P  GE+  +G  L     + I+ +I
Sbjct: 19  DNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS----QEIKNRI 74

Query: 340 GLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGT 398
           G + +E  L+   +++D + Y      +AE +     A   K + +  + L+  +    T
Sbjct: 75  GYLPEERGLYPKMTVEDQLKY------LAE-LKGMPKAEIQKKLQAWLERLE--IVGKKT 125

Query: 399 ----QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIV 454
               +LS G +Q+I    A++ +P +L+LDE  S LD  +  ++++A+ ++     T+I 
Sbjct: 126 KKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIF 185

Query: 455 A-HRLSTV-RNADLIAVIHQGKLV 476
           + HR+  V    D + ++ +G+ V
Sbjct: 186 SSHRMEHVEELCDRLLMLKKGQTV 209

Length = 300

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 52/199 (26%), Positives = 92/199 (46%), Gaps = 11/199 (5%)

Query: 283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLV 342
           S  IP G     +G +G+GKST + ++     P +G+V ++G +    + +++R  IGLV
Sbjct: 44  SFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLR-SIGLV 102

Query: 343 --SQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQL 400
              +  + +     D++   K    I EI             + L   L+  +     +L
Sbjct: 103 MGQKLQLWWDLPALDSLEVLK---LIYEIPDDEFAERLDFLTEIL--DLEGFLKWPVRKL 157

Query: 401 SGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIV--AHRL 458
           S GQ+ R  +A A+L  P++L LDE T  LD  ++  ++E L +    R   ++   H  
Sbjct: 158 SLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIF 217

Query: 459 STV-RNADLIAVIHQGKLV 476
             +    D + +I QG+LV
Sbjct: 218 DDIATLCDRVLLIDQGQLV 236

Length = 325

>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional

 Score = 67.0 bits (163), Expect = 2e-12
 Identities = 61/212 (28%), Positives = 103/212 (48%), Gaps = 15/212 (7%)

Query: 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVI----SLIERFYDPQAGEVLIDGVNLKEFQL 332
           Q  +   L+I  G   AL+G SGSGKST++     LI       +   L+     +E +L
Sbjct: 18  QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRL 77

Query: 333 ----KWIRGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAK--FIDSL 385
               +  R   G + Q+  L    S+ +N+  G  G++       +      K   + +L
Sbjct: 78  ARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQAL 137

Query: 386 PQ-GLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDK 444
            + G+     +  + LSGGQ+QR+AIARA+++  +++L DE  ++LD ES R+V + L  
Sbjct: 138 TRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRD 197

Query: 445 IMINR--TTVIVAHRLS-TVRNADLIAVIHQG 473
           I  N   T V+  H++   +R  + I  + QG
Sbjct: 198 INQNDGITVVVTLHQVDYALRYCERIVALRQG 229

Length = 262

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 65.7 bits (161), Expect = 2e-12
 Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 29/177 (16%)

Query: 273 RPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL 332
           R G  +F+G S ++ +G    L G +GSGK+T++ LI     P AG + +DG    +   
Sbjct: 12  RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDG---GDIDD 68

Query: 333 KWIRGKIGLVSQ----EPVLFTSSIKDNIN-----YGKDGASIAEIMAAAELANAAKFID 383
             +      +      +P L   ++ +N+       G +   IA  + A  LA  A    
Sbjct: 69  PDVAEACHYLGHRNAMKPAL---TVAENLEFWAAFLGGEELDIAAALEAVGLAPLA---- 121

Query: 384 SLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQE 440
            LP G           LS GQK+R+A+AR ++ +  I +LDE T+ALDA +  +  E
Sbjct: 122 HLPFG----------YLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAE 168

Length = 207

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 68.4 bits (168), Expect = 3e-12
 Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 60/205 (29%)

Query: 269 SYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLK 328
             P  P ++I    SLS   G    ++G +G+GKST++ ++       AG   +D    K
Sbjct: 13  VVP--PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIM-------AG---VD----K 56

Query: 329 EFQLK-WIRG--KIGLVSQEPVL-FTSSIKDNINYG------------------------ 360
           EF  +       K+G + QEP L  T ++++N+  G                        
Sbjct: 57  EFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDAD 116

Query: 361 -----KDGASIAEIMAAAELANAAKFID------SLPQGLDTMVGEHGTQLSGGQKQRIA 409
                 + A + EI+ AA+  +  + ++        P   D  V    T+LSGG+++R+A
Sbjct: 117 MDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPW-DADV----TKLSGGERRRVA 171

Query: 410 IARAILKDPRILLLDEATSALDAES 434
           + R +L  P +LLLDE T+ LDAES
Sbjct: 172 LCRLLLSKPDMLLLDEPTNHLDAES 196

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

 Score = 66.0 bits (161), Expect = 5e-12
 Identities = 60/215 (27%), Positives = 115/215 (53%), Gaps = 35/215 (16%)

Query: 283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLV 342
           S ++  G T A++G++GSGKST+  ++    +P +GE+LID   L      +   +I ++
Sbjct: 33  SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMI 92

Query: 343 SQEPVLFTSSIKDNINYGKDGASIAEIMAA-----AELANAAK---FIDSLPQ-GLDTMV 393
            Q+P   ++S+            I++I+        +L    +    I++L Q GL   +
Sbjct: 93  FQDP---STSLNPR-------QRISQILDFPLRLNTDLEPEQREKQIIETLRQVGL---L 139

Query: 394 GEHGT----QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESER-----VVQEALDK 444
            +H +     L+ GQKQR+ +ARA++  P++++ DEA ++LD  S R     ++ E  +K
Sbjct: 140 PDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDM-SMRSQLINLMLELQEK 198

Query: 445 IMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVEK 478
             I  + + V   L  +++ +D + V+HQG++VE+
Sbjct: 199 QGI--SYIYVTQHLGMMKHISDQVLVMHQGEVVER 231

Length = 267

>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional

 Score = 64.2 bits (156), Expect = 6e-12
 Identities = 55/209 (26%), Positives = 96/209 (45%), Gaps = 34/209 (16%)

Query: 268 FSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNL 327
           F Y  +P   +    S  +P+G    L G +G+GK+T++ LI    +P+ GE+L +  ++
Sbjct: 9   FDYHDQP---LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI 65

Query: 328 K------EFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIA-EIMAAAELANAAK 380
           K      + QL ++  + G+    P L   ++++N  Y    +  A  I     L +   
Sbjct: 66  KKDLCTYQKQLCFVGHRSGI---NPYL---TLRENCLYDIHFSPGAVGITELCRLFSLEH 119

Query: 381 FIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQE 440
            ID  P GL          LS GQK+++A+ R  +   ++ LLDE   ALD   E  +  
Sbjct: 120 LID-YPCGL----------LSSGQKRQVALLRLWMSKAKLWLLDEPLVALD---ELSLLT 165

Query: 441 ALDKIMINR----TTVIVAHRLSTVRNAD 465
            + KI  +R      ++ +H+   +  AD
Sbjct: 166 IITKIQEHRAKGGAVLLTSHQDLPLNKAD 194

Length = 200

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 66.9 bits (164), Expect = 8e-12
 Identities = 64/225 (28%), Positives = 111/225 (49%), Gaps = 21/225 (9%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA--- 317
           +E+K+I  ++    G +  +  SL + +G   +L G++G+GKST++ ++   Y P     
Sbjct: 6   LEMKNITKTFG---GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYE 61

Query: 318 GEVLIDGVNLKEFQLKWIRGK----IGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAA 372
           GE++ +G   +E Q   IR      I ++ QE  L    S+ +NI  G +      +   
Sbjct: 62  GEIIFEG---EELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYD 118

Query: 373 AELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 432
           A    A K +  L   LD         L  GQ+Q + IA+A+ K  R+L+LDE T++L  
Sbjct: 119 AMYLRAQKLLAQL--KLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASL-T 175

Query: 433 ESERVVQEALDKIMINR--TTVIVAHRLSTVRN-ADLIAVIHQGK 474
           ESE  V   + + +       + ++H+L+ V+  +D I VI  G+
Sbjct: 176 ESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGR 220

Length = 506

>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 63/218 (28%), Positives = 110/218 (50%), Gaps = 28/218 (12%)

Query: 280 NGFSLSIPSGTTAALVGQSGSGKS-TVISLIERFYDPQ--AGEVLIDG---VNLKEFQLK 333
           N  + S+ +G T  +VG+SGSGKS T  +L+          G    +G   +NL E +L 
Sbjct: 33  NDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELN 92

Query: 334 WIRG-KIGLVSQEPVLFTSSIKDNIN-YGKDGASIAEI------MAAAE-LANAAKFIDS 384
            +R  +I ++ Q+P+  TS     +N Y + G  + E+      M+ AE    + + +D+
Sbjct: 93  KLRAEQISMIFQDPM--TS-----LNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDA 145

Query: 385 --LPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEAL 442
             +P+    M   +  + SGG +QR+ IA A+L  P++L+ DE T+ALD   +  +   L
Sbjct: 146 VKMPEARKRM-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLL 204

Query: 443 D--KIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477
           +  K   N   +++ H L  V    D + V++ G+ +E
Sbjct: 205 NELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTME 242

Length = 330

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 66.0 bits (161), Expect = 1e-11
 Identities = 59/210 (28%), Positives = 97/210 (46%), Gaps = 20/210 (9%)

Query: 280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA---GEVLIDGVNLKEFQLKWI- 335
           +G  L +  G    L G++G+GKST++ ++   Y P     GE+   G  LK   ++   
Sbjct: 18  DGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY-PHGTWDGEIYWSGSPLKASNIRDTE 76

Query: 336 RGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKF------IDSLPQG 388
           R  I ++ QE  L    S+ +NI  G +       MA   +   AK       +D+    
Sbjct: 77  RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT 136

Query: 389 LDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-DAESERVVQEALDKIMI 447
                        GGQ+Q + IA+A+ K  R+L+LDE +S+L + E+E ++    D    
Sbjct: 137 RPVG------DYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAH 190

Query: 448 NRTTVIVAHRLSTVRN-ADLIAVIHQGKLV 476
               V ++H+L+ V+   D I VI  G+ V
Sbjct: 191 GVACVYISHKLNEVKAVCDTICVIRDGQHV 220

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 65.6 bits (161), Expect = 2e-11
 Identities = 50/220 (22%), Positives = 100/220 (45%), Gaps = 36/220 (16%)

Query: 279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLK----W 334
               S ++ +G    + G  G+G++ +   +       +GE+L+DG   K  +++     
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDG---KPVRIRSPRDA 331

Query: 335 IRGKIGLVS----QEPVLFTSSIKDNINYGKDGASIAEIM--AAAELANAAKFIDSL--- 385
           I+  I  V      E ++   SI +NI            +     E A A ++I  L   
Sbjct: 332 IKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIK 391

Query: 386 PQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD--AESE--RVVQEA 441
               +  +G     LSGG +Q++ +AR +  DP++L+LDE T  +D  A++E  R+++E 
Sbjct: 392 TPSPEQPIGT----LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIREL 447

Query: 442 LDKIMINRTTVIVAHRLST-----VRNADLIAVIHQGKLV 476
             +       +++   +S+     +  +D I V+ +G++V
Sbjct: 448 AAEGK----AILM---ISSELPELLGLSDRILVMREGRIV 480

Length = 500

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 65.9 bits (162), Expect = 2e-11
 Identities = 60/205 (29%), Positives = 91/205 (44%), Gaps = 68/205 (33%)

Query: 274 PGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLK 333
           P +QI    SLS   G    ++G +G+GKST++ ++       AG   +D    KEF+  
Sbjct: 18  PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIM-------AG---VD----KEFE-- 61

Query: 334 WIRG--------KIGLVSQEPVLFTS-SIKDNI-------------------NYGKDGAS 365
              G        K+G + QEP L    ++++N+                    Y +  A 
Sbjct: 62  ---GEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDAD 118

Query: 366 IAEIMA-AAEL-----ANAAKFIDS----------LPQGLDTMVGEHGTQLSGGQKQRIA 409
              + A   EL     A  A  +DS           P   D  V    T+LSGG+++R+A
Sbjct: 119 FDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPW-DAKV----TKLSGGERRRVA 173

Query: 410 IARAILKDPRILLLDEATSALDAES 434
           + R +L+ P +LLLDE T+ LDAES
Sbjct: 174 LCRLLLEKPDMLLLDEPTNHLDAES 198

Length = 556

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 65.3 bits (160), Expect = 3e-11
 Identities = 51/247 (20%), Positives = 101/247 (40%), Gaps = 47/247 (19%)

Query: 251 GVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIE 310
            + + D RG   +KD+                S  + +G    + G +G+G+S ++  I 
Sbjct: 262 DLSVKDRRGVTAVKDV----------------SFEVRAGEIVGIAGVAGNGQSELVEAIS 305

Query: 311 RFYDPQAGEVLIDGVNL------KEFQLKWI------RGKIGLVSQEPVLFTSSIK--DN 356
               P +G +L++G ++      +E +   +      R   GLV    +     +   D 
Sbjct: 306 GLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDK 365

Query: 357 INYGKDGASIAEIMAAAELAN--AAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI 414
             + + G    +  A  + A     +F D      D         LSGG +Q++ +AR +
Sbjct: 366 KPFSRGG--FLDRRAIRKFARELIEEF-DVRAPSPDAPAR----SLSGGNQQKLILAREL 418

Query: 415 LKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLST-----VRNADLIAV 469
            + P +L+  + T  LD  +   + E L ++      V++   +S      +  +D IAV
Sbjct: 419 ARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLL---ISEDLDEILELSDRIAV 475

Query: 470 IHQGKLV 476
           I++G++V
Sbjct: 476 IYEGRIV 482

Length = 501

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 63.0 bits (153), Expect = 3e-11
 Identities = 60/215 (27%), Positives = 100/215 (46%), Gaps = 33/215 (15%)

Query: 275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID--GVNLKEFQL 332
           G ++    SL++ SG    L+G +G+GK+T   ++       AG ++ID   ++L     
Sbjct: 15  GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHA 74

Query: 333 KWIRGKIGLVSQEPVLFTS-SIKDNI----NYGKDGASIAEIMAAAELA---NAAKFIDS 384
           +  RG IG + QE  +F   S+ DN+        D ++      A EL    +     DS
Sbjct: 75  RARRG-IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDS 133

Query: 385 LPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES----ERVVQE 440
           +           G  LSGG+++R+ IARA+  +P+ +LLDE  + +D  S    +R+++ 
Sbjct: 134 M-----------GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEH 182

Query: 441 ALDK---IMIN----RTTVIVAHRLSTVRNADLIA 468
             D    ++I     R T+ V  R   V    LIA
Sbjct: 183 LRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIA 217

Length = 241

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 60.9 bits (149), Expect = 3e-11
 Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 7/79 (8%)

Query: 399 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAH-R 457
           QLSGG+K R+A+A+ +L++P +LLLDE T+ LD ES   ++EAL +     T ++V+H R
Sbjct: 70  QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKE--YPGTVILVSHDR 127

Query: 458 --LSTVRNADLIAVIHQGK 474
             L  V  A  I  +  GK
Sbjct: 128 YFLDQV--ATKIIELEDGK 144

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

 Score = 62.6 bits (152), Expect = 4e-11
 Identities = 52/210 (24%), Positives = 97/210 (46%), Gaps = 31/210 (14%)

Query: 282 FSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL-KWIRGKIG 340
            S  + +G    LVG +G+GKST+++ +       +G +   G  L+ +   +  R +  
Sbjct: 18  LSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY 76

Query: 341 LVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQL 400
           L  Q+   F   +   +   +   +  E     ++A A    D L +  +        QL
Sbjct: 77  LSQQQTPPFAMPVWHYLTLHQPDKTRTE--LLNDVAGALALDDKLGRSTN--------QL 126

Query: 401 SGGQKQRIAIARAILK-------DPRILLLDEATSALDAESERVVQE-ALDKIMIN---- 448
           SGG+ QR+ +A  +L+         ++LLLDE  ++LD     V Q+ ALD+++      
Sbjct: 127 SGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLD-----VAQQSALDRLLSALCQQ 181

Query: 449 -RTTVIVAHRLS-TVRNADLIAVIHQGKLV 476
               V+ +H L+ T+R+A    ++ +GKL+
Sbjct: 182 GLAIVMSSHDLNHTLRHAHRAWLLKRGKLL 211

Length = 248

>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor

 Score = 61.7 bits (150), Expect = 9e-11
 Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 29/185 (15%)

Query: 280 NGFSLSIPSGT-----TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW 334
             F+L +  G+        ++G +G GK+T I ++     P  G++ I+   +  ++ ++
Sbjct: 11  GEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV-SYKPQY 69

Query: 335 IRGKI-GLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMV 393
           I+    G V        SSI    ++        EI                P  ++ ++
Sbjct: 70  IKADYEGTVRD----LLSSITK--DFYTHPYFKTEIAK--------------PLQIEQIL 109

Query: 394 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMIN--RTT 451
                +LSGG+ QR+AIA  + KD  I LLDE ++ LD E   +  + + +   N  +T 
Sbjct: 110 DREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTA 169

Query: 452 VIVAH 456
            +V H
Sbjct: 170 FVVEH 174

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246

>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 61/224 (27%), Positives = 104/224 (46%), Gaps = 24/224 (10%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFS-----LSIPSGTTAALVGQSGSGKSTVISLIERFYDP 315
           +EL+++ F+Y         NGFS     L+I  G    L+G +GSGKST+  L+   Y P
Sbjct: 323 LELRNVTFAYQD-------NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQP 375

Query: 316 QAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAEL 375
           Q+GE+L+DG  +   Q +  R     V  +  LF   +        + A + + +   ++
Sbjct: 376 QSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE-GKPANPALVEKWLERLKM 434

Query: 376 ANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 435
           A+  +  D   +  +        +LS GQK+R+A+  A+ ++  ILLLDE  +  D    
Sbjct: 435 AHKLELEDG--RISN-------LKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFR 485

Query: 436 RVV-QEALDKIMINRTTVI-VAHRLSTVRNADLIAVIHQGKLVE 477
           R   Q  L  +     T+  ++H      +AD +  +  G+L E
Sbjct: 486 REFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSE 529

Length = 547

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 61.4 bits (149), Expect = 2e-10
 Identities = 55/201 (27%), Positives = 97/201 (48%), Gaps = 24/201 (11%)

Query: 273 RPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL 332
           R G       S ++P G+ AALVG +GSGKST+   +  F    +G++ I G   ++  L
Sbjct: 17  RNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ-AL 75

Query: 333 KWIRGKIGLVSQE-------PVLFTSSIKDNINYGKDGASIAEIMAAAELANAA--KFID 383
           +  +  +  V Q        PVL    ++D +  G+ G      M     A     + + 
Sbjct: 76  Q--KNLVAYVPQSEEVDWSFPVL----VEDVVMMGRYGH-----MGWLRRAKKRDRQIVT 124

Query: 384 SLPQGLDTMVGEHGT--QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEA 441
           +    +D +   H    +LSGGQK+R+ +ARAI +  +++LLDE  + +D ++E  +   
Sbjct: 125 AALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISL 184

Query: 442 LDKIMIN-RTTVIVAHRLSTV 461
           L ++    +T ++  H L +V
Sbjct: 185 LRELRDEGKTMLVSTHNLGSV 205

Length = 272

>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA

 Score = 61.1 bits (149), Expect = 2e-10
 Identities = 58/237 (24%), Positives = 98/237 (41%), Gaps = 62/237 (26%)

Query: 283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRG----- 337
            + IP G    + G SGSGKS++I   +  Y   A    +     +      I G     
Sbjct: 15  DVDIPLGVLTCVTGVSGSGKSSLI--NDTLY--PALARRLHLKKEQPGNHDRIEGLEHID 70

Query: 338 KIGLVSQEPV-------------LFTSSIKD----------------NINYGKDGASIAE 368
           K+ ++ Q P+             +F   I++                 + Y   G SIA+
Sbjct: 71  KVIVIDQSPIGRTPRSNPATYTGVFDE-IRELFCEVCKGKRYNRETLEVRY--KGKSIAD 127

Query: 369 I--MAAAELANAAKFIDSLPQ-----------GLDTM-VGEHGTQLSGGQKQRIAIARAI 414
           +  M   E   A +F +++P+           GL  + +G+  T LSGG+ QRI +A+ +
Sbjct: 128 VLDMTVEE---ALEFFENIPKIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKEL 184

Query: 415 LKDPR---ILLLDEATSALDAESERVVQEALDKIMINRTTVIVA-HRLSTVRNADLI 467
            K      + +LDE T+ L     + + E L +++    TV+V  H L  ++ AD I
Sbjct: 185 SKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWI 241

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261

>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC

 Score = 60.7 bits (148), Expect = 2e-10
 Identities = 56/243 (23%), Positives = 106/243 (43%), Gaps = 44/243 (18%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLI--ERFYDPQAG 318
           +++KD++ S   +    I  G +L++  G   A++G +GSGKST+   I     Y+  +G
Sbjct: 1   LKIKDLHVSVEDKE---ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSG 57

Query: 319 EVLIDGVNLKEFQLKWIRGK-IGLVSQEPV--------LFTSSIKDNINYGKDGASIAEI 369
            +L  G +L E +        + L  Q P          F   ++  +N  +       +
Sbjct: 58  TILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEF---LRSALNARRSARGEEPL 114

Query: 370 MAAAELANAAKFIDSLPQGLDTM------------VGEHGTQLSGGQKQRIAIARAILKD 417
                      F+  L   L  +             G      SGG+K+R  I +  L +
Sbjct: 115 DLLD-------FLKLLKAKLALLGMDEEFLNRSVNEG-----FSGGEKKRNEILQMALLE 162

Query: 418 PRILLLDEATSALDAESERVVQEALDKIMI-NRTTVIVAH--RLSTVRNADLIAVIHQGK 474
           P++ +LDE  S LD ++ ++V E ++++   +R+ +I+ H  RL      D + V+  G+
Sbjct: 163 PKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGR 222

Query: 475 LVE 477
           +V+
Sbjct: 223 IVK 225

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 53/219 (24%), Positives = 103/219 (47%), Gaps = 13/219 (5%)

Query: 261 IELKDIYFSYPSRPGEQ-IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 319
           I +  +   Y    G Q   +  S     G     +G +G+GKST + +I  +  P +G 
Sbjct: 3   IRVSSLTKLY----GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGS 58

Query: 320 VLIDGVNLKEFQLKWIRGKIG-LVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANA 378
           V + G ++ +   + ++  IG L    P+     +++   Y +  A I  +         
Sbjct: 59  VQVCGEDVLQNPKE-VQRNIGYLPEHNPLYLDMYVRE---YLQFIAGIYGMKGQLLKQRV 114

Query: 379 AKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVV 438
            + I+ +  GL     +   QLS G +QR+ +A+A++ DP++L+LDE T+ LD      +
Sbjct: 115 EEMIELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEI 172

Query: 439 QEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLV 476
           +  +  I  ++T ++  H +  V    D + +I++GK+V
Sbjct: 173 RNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIV 211

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 61.7 bits (150), Expect = 5e-10
 Identities = 55/208 (26%), Positives = 95/208 (45%), Gaps = 39/208 (18%)

Query: 278 IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV-LIDGVNLKEF---QLK 333
           I +   L++  G+   L+G++G+GKST+I L+     P +GE+ L  G+ L  F   QL+
Sbjct: 327 ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLE 386

Query: 334 WIRGKIG----LVSQEPVLFTSSIKDNI-NYGKDGASIAEIMAAAELANAAKFIDSLPQG 388
           ++R        L    P      ++D +  +G  G  + E                    
Sbjct: 387 FLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETR----------------- 429

Query: 389 LDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMIN 448
                     + SGG+K R+ +A  + + P +LLLDE T+ LD +  + + EAL  I   
Sbjct: 430 ----------RFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEAL--IDFE 477

Query: 449 RTTVIVAHRLSTVRN-ADLIAVIHQGKL 475
              V+V+H    +R+  D + ++H GK+
Sbjct: 478 GALVVVSHDRHLLRSTTDDLYLVHDGKV 505

Length = 638

>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed

 Score = 59.4 bits (144), Expect = 5e-10
 Identities = 53/220 (24%), Positives = 101/220 (45%), Gaps = 17/220 (7%)

Query: 272 SRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLI--ERFYDPQAGEVLIDGVNLKE 329
           S   + I  G +L +  G   A++G +GSGKST+ + +     Y+   G V   G +L E
Sbjct: 10  SVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLE 69

Query: 330 FQLKWIRGK-IGLVSQEPV--------LFTSSIKDNINYGKDGASIAEIMAAAELANAAK 380
              +   G+ I +  Q PV         F  +  + +   +    +        +     
Sbjct: 70  LSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIA 129

Query: 381 FIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQE 440
            +  +P+ L T     G   SGG+K+R  I +  + +P + +LDE+ S LD ++ ++V +
Sbjct: 130 LLK-MPEDLLTRSVNVG--FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVAD 186

Query: 441 ALDKIMI-NRTTVIVAH--RLSTVRNADLIAVIHQGKLVE 477
            ++ +    R+ +IV H  R+      D + V++QG++V+
Sbjct: 187 GVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK 226

Length = 248

>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor

 Score = 59.7 bits (145), Expect = 5e-10
 Identities = 53/203 (26%), Positives = 87/203 (42%), Gaps = 27/203 (13%)

Query: 273 RPGEQIFNGFSLSIP-SGTTAALVGQSGSGKSTVISLIE--------RFYDPQAGEVLID 323
           R G   F    L +P  G    LVG +G GKST + ++         +F DP   + ++D
Sbjct: 9   RYGPNSFKLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILD 68

Query: 324 ---GVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAK 380
              G  L+ +  K + G +  V  +P        D I     G     +    E     +
Sbjct: 69  EFRGSELQNYFTKLLEGDVK-VIVKP-----QYVDLIPKAVKGKVGELLKKKDERGKLDE 122

Query: 381 FIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA----ESER 436
            +D L   L  ++  +  QLSGG+ QR+AIA A+ +D      DE +S LD      + R
Sbjct: 123 LVDQL--ELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAAR 180

Query: 437 VVQEALDKIMINRTTVIVAHRLS 459
           +++E  +    +   ++V H L+
Sbjct: 181 LIRELAED---DNYVLVVEHDLA 200

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255

>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional

 Score = 60.5 bits (147), Expect = 5e-10
 Identities = 67/216 (31%), Positives = 102/216 (47%), Gaps = 29/216 (13%)

Query: 283 SLSIPSGTTAALVGQSGSGKS----TVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK 338
           S S+  G    +VG+SGSGKS     ++ LI+      A ++  +G +L+    K  R  
Sbjct: 27  SYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNL 86

Query: 339 IG----LVSQEPVLFTS---------SIKDNINYGKDGASIAEIMAAAELANAAKFIDSL 385
           +G    ++ Q+P+  TS          I + I   + G        A +L N     D  
Sbjct: 87  VGAEVAMIFQDPM--TSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPD-- 142

Query: 386 PQG-LDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDK 444
           P   LD  V  H  QLSGG  QR+ IA AI   P++L+ DE T+ALD   +  + E L +
Sbjct: 143 PASRLD--VYPH--QLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLE 198

Query: 445 IMI--NRTTVIVAHRLSTV-RNADLIAVIHQGKLVE 477
           +    N   V++ H L+ V   A  I V++ G++VE
Sbjct: 199 LQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234

Length = 326

>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 59.2 bits (144), Expect = 7e-10
 Identities = 53/223 (23%), Positives = 101/223 (45%), Gaps = 41/223 (18%)

Query: 280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339
           N  +L +      +L+G +G+GK+TV + +  FY P  G +L+ G        + I G  
Sbjct: 22  NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRG--------QHIEGLP 73

Query: 340 G-LVSQEPVLFTSSIKDNINYGKDGASIAEIMAA---------------------AE--- 374
           G  +++  V+ T     ++   ++   I  ++ A                     AE   
Sbjct: 74  GHQIARMGVVRTFQ---HVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEA 130

Query: 375 LANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 434
           L  AA +++ +  GL          L+ GQ++R+ IAR ++  P IL+LDE  + L+ + 
Sbjct: 131 LDRAATWLERV--GLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKE 188

Query: 435 ERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGK 474
            + + E + ++    N T +++ H +  V   +D I V++QG 
Sbjct: 189 TKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGT 231

Length = 255

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 58.3 bits (141), Expect = 8e-10
 Identities = 50/189 (26%), Positives = 79/189 (41%), Gaps = 30/189 (15%)

Query: 284 LSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVS 343
           LS   G    L+G +G+GK+T++  I     P  G V + G +  +         IG V 
Sbjct: 1   LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKG-----WRHIGYVP 55

Query: 344 QEPVL---FTSSIKDNINYGKDG----------ASIAEIMAAAELANAAKFIDSLPQGLD 390
           Q       F  S+   +  G+ G          A  A +  A       +  D  P G  
Sbjct: 56  QRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADR-PVG-- 112

Query: 391 TMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRT 450
                   +LSGGQ+QR+ +ARA+   P +LLLDE  + LD  ++ ++ E   ++    T
Sbjct: 113 --------ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGT 164

Query: 451 TVI-VAHRL 458
            ++   H L
Sbjct: 165 AILMTTHDL 173

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 59.4 bits (144), Expect = 2e-09
 Identities = 54/232 (23%), Positives = 107/232 (46%), Gaps = 29/232 (12%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           I +  I  S+            +L++  G   AL+G++G+GKST++ ++   ++P  G +
Sbjct: 6   ISMAGIGKSFG---PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI 62

Query: 321 LIDGVNLKEFQLKW-IRGKIGLVSQE-PVLFTSSIKDNINYGKD------GASIAEIMAA 372
            I+ +N  +   K   +  IG++ QE  V+   ++ +N+  G+       G +I +    
Sbjct: 63  TINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREM 122

Query: 373 AELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-D 431
              A        L   LD  V      LS   KQ + IA+ ++ D +++++DE TS+L +
Sbjct: 123 RVRAAMMLLRVGLKVDLDEKVAN----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTN 178

Query: 432 AESERVVQEALDKIMINR------TTVIVAHRLSTVRN-ADLIAVIHQGKLV 476
            E + +       +++N+        V ++H+L+ +R   D   V+  G  V
Sbjct: 179 KEVDYLF------LIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSV 224

Length = 510

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 61/207 (29%), Positives = 98/207 (47%), Gaps = 39/207 (18%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA--- 317
           I L +   SY  RP   I +  S  +  G    +VG +G+GKST++SLI   + PQ    
Sbjct: 261 IVLNNGVVSYNDRP---ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDH-PQGYSN 316

Query: 318 -----------GEVLIDGVNLKEFQLKWIRGKIGLVSQEPVL---FTSSIKDNINYGK-D 362
                      GE + D           I+  IG VS    L    ++S+++ I  G  D
Sbjct: 317 DLTLFGRRRGSGETIWD-----------IKKHIGYVSSSLHLDYRVSTSVRNVILSGFFD 365

Query: 363 GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQ-LSGGQKQRIA-IARAILKDPRI 420
              I + ++  +   A +++D L  G+D    +     LS GQ QR+A I RA++K P +
Sbjct: 366 SIGIYQAVSDRQQKLAQQWLDIL--GIDKRTADAPFHSLSWGQ-QRLALIVRALVKHPTL 422

Query: 421 LLLDEATSALDAESERVVQEALDKIMI 447
           L+LDE    LD  + ++V+  +D ++I
Sbjct: 423 LILDEPLQGLDPLNRQLVRRFVD-VLI 448

Length = 490

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 59.0 bits (143), Expect = 3e-09
 Identities = 55/241 (22%), Positives = 104/241 (43%), Gaps = 59/241 (24%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERF--YDPQAG 318
           IE+K++   +    G+++    S +I  G    ++G+SG+GKS ++ ++     Y+P +G
Sbjct: 1   IEVKNLTKKFD---GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSG 57

Query: 319 EVL---------------------------------IDGVNLKEFQLKWIRGKIGLVSQE 345
            ++                                 +D  NL +   + IR +I ++ Q 
Sbjct: 58  RIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQR 117

Query: 346 PVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLD--TMVG-EH-----G 397
                        YG D      + A  E+    K  +++ + +D   MV   H      
Sbjct: 118 TFAL---------YGDDTVLDNVLEALEEIGYEGK--EAVGRAVDLIEMVQLSHRITHIA 166

Query: 398 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINR--TTVIVA 455
             LSGG+KQR+ +AR + K+P + L DE T  LD ++ ++V  AL++ +     + V+ +
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226

Query: 456 H 456
           H
Sbjct: 227 H 227

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 57/226 (25%), Positives = 105/226 (46%), Gaps = 39/226 (17%)

Query: 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGVNLKEFQLKW 334
           +I  G +LSI  G   A++G +GSGKST+  +I     Y    G++L  G ++ + + + 
Sbjct: 21  EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPE- 79

Query: 335 IRGKIG--LVSQEPVLFTSSIKDNINYGKDGASIAEIMAAA----------ELANAAKFI 382
            R  +G  L  Q P+               G S A+ +  A             +  +F+
Sbjct: 80  ERAHLGIFLAFQYPIEIP------------GVSNADFLRLAYNSKRKFQGLPELDPLEFL 127

Query: 383 DSLPQGLDTMVGEHGTQL--------SGGQKQRIAIARAILKDPRILLLDEATSALDAES 434
           + + + L  +VG   + L        SGG+K+R  I +  L D  + +LDE  S LD ++
Sbjct: 128 EIINEKLK-LVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDA 186

Query: 435 ERVVQEALDKIM-INRTTVIVAH--RLSTVRNADLIAVIHQGKLVE 477
            +++ E ++K+M    + +++ H  RL      D + V+  GK+++
Sbjct: 187 LKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIK 232

Length = 252

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 64/210 (30%), Positives = 108/210 (51%), Gaps = 25/210 (11%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           ++LK I  ++P   G +  +G +L++  G   ALVG++G+GKST++ ++   Y   AG +
Sbjct: 5   LQLKGIDKAFP---GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSI 61

Query: 321 LIDGVNLKEFQLKWIRGK----IGLVSQEPVLFTS-SIKDNINYGKDGAS-IAEIMAAAE 374
           L  G   KE      +      IG++ QE  L    +I +NI  G++  +    I     
Sbjct: 62  LYLG---KEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKM 118

Query: 375 LANAAKFIDSL--PQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-D 431
            A A K +  L      D +VGE    LS G++Q + IA+ +  + +++++DE T AL D
Sbjct: 119 YAEADKLLARLNLRFSSDKLVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTD 174

Query: 432 AESE---RVVQEALDKIMINRTTVIVAHRL 458
            E+E   RV++E   +    R  V ++HRL
Sbjct: 175 TETESLFRVIRELKSQ---GRGIVYISHRL 201

Length = 501

>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 56.4 bits (136), Expect = 4e-09
 Identities = 47/173 (27%), Positives = 90/173 (52%), Gaps = 15/173 (8%)

Query: 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA--GEVLIDGVNLKEFQLKW 334
           Q  +  SL I  G    L+G +G+GK+T++  +    DP+A  G ++ DG ++ ++Q   
Sbjct: 19  QALHEVSLHINQGEIVTLIGANGAGKTTLLGTL--CGDPRATSGRIVFDGKDITDWQTAK 76

Query: 335 I-RGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTM 392
           I R  + +V +   +F+  ++++N+  G   A   +     +        +  P+  +  
Sbjct: 77  IMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIK-----WVYELFPRLHERR 131

Query: 393 VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKI 445
           +   GT +SGG++Q +AI RA++  PR+LLLDE +  L   +  ++Q+  D I
Sbjct: 132 IQRAGT-MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL---APIIIQQIFDTI 180

Length = 237

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 57.9 bits (141), Expect = 7e-09
 Identities = 53/217 (24%), Positives = 92/217 (42%), Gaps = 45/217 (20%)

Query: 280 NGFSL-SIPS---GTTAALVGQSGSGKSTVIS-----LIERFYDPQAGEVLIDGV----- 325
           NGF L  +P    G    ++G +G GK+T +      LI    D +  E   D V     
Sbjct: 86  NGFKLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYE-EEPSWDEVLKRFR 144

Query: 326 ---------NLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELA 376
                     L   ++K +  K   V   P +F   +++             +    E  
Sbjct: 145 GTELQNYFKKLYNGEIKVVH-KPQYVDLIPKVFKGKVRE------------LLKKVDERG 191

Query: 377 NAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESER 436
              + ++ L  GL+ ++    ++LSGG+ QR+AIA A+L+D      DE TS LD   +R
Sbjct: 192 KLDEVVERL--GLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIR-QR 248

Query: 437 V-VQEALDKIMINRTTVIVAHRLSTVRNADLIA-VIH 471
           + V   + ++   +  ++V H L+ +   D +A  +H
Sbjct: 249 LNVARLIRELAEGKYVLVVEHDLAVL---DYLADNVH 282

Length = 590

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 57.7 bits (140), Expect = 7e-09
 Identities = 52/216 (24%), Positives = 97/216 (44%), Gaps = 28/216 (12%)

Query: 273 RPGEQIFNGFSLSIP-SGTTAALVGQSGSGKSTVISLIE--------RFYDPQAGEVLID 323
           R G   F  + L  P  G    ++G +G GKST + ++         R+ DP + + +I 
Sbjct: 83  RYGVNGFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIK 142

Query: 324 ---GVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAK 380
              G  L+ +  K   G++  V +   +      D I     G     +    E     +
Sbjct: 143 RFRGTELQNYFKKLYEGELRAVHKPQYV------DLIPKVVKGKVGELLKKVDERGKFDE 196

Query: 381 FIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE----R 436
            ++ L  GL+ ++    ++LSGG+ QR+AIA A+L+D  +   DE +S LD        R
Sbjct: 197 VVERL--GLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAAR 254

Query: 437 VVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIH 471
           V++E  +     +  ++V H L+ +   +D + +++
Sbjct: 255 VIRELAED---GKYVIVVEHDLAVLDYLSDFVHILY 287

Length = 591

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score = 57.6 bits (139), Expect = 8e-09
 Identities = 53/198 (26%), Positives = 92/198 (46%), Gaps = 27/198 (13%)

Query: 278 IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIE-RFYDPQ-AGEVLIDGVNLKEFQLKWI 335
           I NG +     G   A++G SGSGKST+++ +  R       G +L +     +  LK  
Sbjct: 83  ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILK-- 140

Query: 336 RGKIGLVSQEPVL-----------FTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDS 384
             + G V+Q+ +L           F S ++   +  K    +      +EL         
Sbjct: 141 --RTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELG-------- 190

Query: 385 LPQGLDTMVGEHGTQ-LSGGQKQRIAIARAILKDPRILLLDEATSALDAESE-RVVQEAL 442
           L +  +T++G    + +SGG+++R++IA  +L +P +L+LDE TS LDA +  R+V    
Sbjct: 191 LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLG 250

Query: 443 DKIMINRTTVIVAHRLST 460
                 +T V   H+ S+
Sbjct: 251 SLAQKGKTIVTSMHQPSS 268

Length = 659

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 57.1 bits (138), Expect = 1e-08
 Identities = 61/236 (25%), Positives = 109/236 (46%), Gaps = 33/236 (13%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ-AGE 319
           +E +++       P  +  +  S S+  G    + G  G+G++ ++  +   Y  +  G 
Sbjct: 258 LEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGN 317

Query: 320 VLIDG--VNLKEFQLKWIRGKIGLVSQE-------PVLFTSSIKDNINYG--KDGASIAE 368
           V I+G  V+++    + IR  I +V ++       P+L    +  NI     K       
Sbjct: 318 VFINGKPVDIRNPA-QAIRAGIAMVPEDRKRHGIVPIL---GVGKNITLSVLKSFCFKMR 373

Query: 369 IMAAAELANAAKFIDSLPQGLDTMVGEHG---TQLSGGQKQRIAIARAILKDPRILLLDE 425
           I AAAEL    + I S  Q L            +LSGG +Q+  +A+ +L +PR+L+LDE
Sbjct: 374 IDAAAEL----QIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDE 429

Query: 426 ATSALD----AESERVV-QEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKL 475
            T  +D     E  +++ Q A + + I    ++V+  L+ V   +D + VI +GKL
Sbjct: 430 PTRGVDVGAKYEIYKLINQLAQEGVAI----IVVSSELAEVLGLSDRVLVIGEGKL 481

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 54/194 (27%), Positives = 77/194 (39%), Gaps = 49/194 (25%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           I   D  F YP  P   +F   +  I   +  A+VG +G GKST++ LI     P +G V
Sbjct: 509 ISFSDASFGYPGGP--LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV 566

Query: 321 L--------------IDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASI 366
                          +DG++L               S  P+L+       +   K  A +
Sbjct: 567 FRSAKVRMAVFSQHHVDGLDL---------------SSNPLLYMMRCFPGVPEQKLRAHL 611

Query: 367 AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 426
                   LA            L  M       LSGGQK R+A A+   K P ILLLDE 
Sbjct: 612 GSFGVTGNLA------------LQPMY-----TLSGGQKSRVAFAKITFKKPHILLLDEP 654

Query: 427 TSALDAES-ERVVQ 439
           ++ LD ++ E ++Q
Sbjct: 655 SNHLDLDAVEALIQ 668

Length = 718

>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

 Score = 57.1 bits (138), Expect = 1e-08
 Identities = 55/223 (24%), Positives = 92/223 (41%), Gaps = 39/223 (17%)

Query: 247 YDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVI 306
           Y  NG+K ++I             P+  G+ +    S  +PSG    + G +G GKS++ 
Sbjct: 447 YQDNGIKFENIP---------LVTPN--GDVLIESLSFEVPSGNNLLICGPNGCGKSSLF 495

Query: 307 SLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINY------- 359
            ++   +    G +               +GK+  V Q P +   +++D I Y       
Sbjct: 496 RILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDM 544

Query: 360 ---GKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK 416
              G     + +I+   +L +    I     G    V +    LSGG+KQRIA+AR    
Sbjct: 545 KRRGLSDKDLEQILDNVQLTH----ILEREGGWSA-VQDWMDVLSGGEKQRIAMARLFYH 599

Query: 417 DPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLS 459
            P+  +LDE TSA+  + E  +     +  I   +  V+HR S
Sbjct: 600 KPQFAILDECTSAVSVDVEGYMYRLCREFGITLFS--VSHRKS 640

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659

>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 65/238 (27%), Positives = 96/238 (40%), Gaps = 46/238 (19%)

Query: 272 SRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVI-SLIERFYDPQA-------GEVLID 323
           +R    I    SL I  G   AL+G++G+GKST++ +L        A       G+V ++
Sbjct: 10  ARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLN 69

Query: 324 GVNLKEF---QLKWIRGKIGLVSQEPVLFTSSIKDNINYG------KDGASIAE----IM 370
           G  L      +L  +R  +   +Q    F  S ++ +  G      + GA          
Sbjct: 70  GEPLAAIDAPRLARLRAVLPQAAQPA--FAFSAREIVLLGRYPHARRAGALTHRDGEIAW 127

Query: 371 AAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK---------DPRIL 421
            A  LA A             +VG   T LSGG+  R+  AR + +          PR L
Sbjct: 128 QALALAGA-----------TALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYL 176

Query: 422 LLDEATSALD-AESERVVQEALDKIMINRTTV--IVAHRLSTVRNADLIAVIHQGKLV 476
           LLDE T+ALD A   R++             V  IV       R+AD IA++  G +V
Sbjct: 177 LLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIV 234

Length = 272

>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 50/207 (24%), Positives = 89/207 (42%), Gaps = 34/207 (16%)

Query: 284 LSIPSGTTAALVGQSGSGKSTVISLIERF--------YDPQAGEVLIDGVNLKEFQLKWI 335
           L I  G   A+VGQSG+GK+T++ +I           Y P +G+V +    +        
Sbjct: 404 LEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPG-- 461

Query: 336 RGKIGLVSQEPVLFTSSIKDNI-NYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVG 394
                    EP     +I +++ +   D  +  EI+  A L++A  +             
Sbjct: 462 -------EYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKF--------- 505

Query: 395 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRT-TVI 453
              ++LS GQK+R  +A+ + + P +LL+DE  + LD  +   V   + ++      T+I
Sbjct: 506 ---SELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLI 562

Query: 454 VAHRLSTVRNA---DLIAVIHQGKLVE 477
           V      V NA   D + ++  GK+  
Sbjct: 563 VVTHRPEVGNALRPDTLILVGYGKVPV 589

Length = 593

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 52.8 bits (126), Expect = 2e-08
 Identities = 42/188 (22%), Positives = 60/188 (31%), Gaps = 60/188 (31%)

Query: 288 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL-IDGVNLKEFQLKWIRGKIGLVSQEP 346
            G    +VG  GSGK+T+   + R   P  G V+ IDG ++ E  L  +   I       
Sbjct: 1   PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLII------- 53

Query: 347 VLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQ 406
                                                         VG      SG  + 
Sbjct: 54  ----------------------------------------------VGGKKASGSGELRL 67

Query: 407 RIAIARAILKDPRILLLDEATSALDAESERVVQEALD------KIMINRTTVIVAHRLST 460
           R+A+A A    P +L+LDE TS LDAE E ++    +             TVI+      
Sbjct: 68  RLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEK 127

Query: 461 VRNADLIA 468
                L+ 
Sbjct: 128 DLGPALLR 135

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 51.7 bits (125), Expect = 4e-08
 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 14/84 (16%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           IEL+++  +Y  +    +    SL+I  G    LVG++G+GKST++ LI    +P  G V
Sbjct: 1   IELENLSKTYGGKL---LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQ 344
                            KIG   Q
Sbjct: 58  TWGSTV-----------KIGYFEQ 70

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 55.4 bits (134), Expect = 4e-08
 Identities = 49/200 (24%), Positives = 80/200 (40%), Gaps = 33/200 (16%)

Query: 265 DIYFSYPSRPGEQIFNGFSLSIPSGTTA-----ALVGQSGSGKSTVISLIERFYDPQAGE 319
           D    YP          F L +  G         ++G +G GK+T + L+     P  G 
Sbjct: 340 DTLVEYPDLKKTY--GDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS 397

Query: 320 VLIDGVNLKEFQLKWIRGKI-GLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANA 378
                V+ K    ++I     G V     L  S+I+           I + +        
Sbjct: 398 EEDLKVSYKP---QYISPDYDGTVED---LLRSAIRSAFGSSYFKTEIVKPL-------- 443

Query: 379 AKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVV 438
                +L   L+  V E    LSGG+ QR+AIA A+ ++  + LLDE ++ LD E   +V
Sbjct: 444 -----NLEDLLERPVDE----LSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIV 494

Query: 439 QEALDKIMINR--TTVIVAH 456
            + + + + N   T ++V H
Sbjct: 495 AKVIRRFIENNEKTALVVDH 514

Length = 591

>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional

 Score = 52.9 bits (128), Expect = 5e-08
 Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 30/177 (16%)

Query: 278 IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLK----EF--Q 331
           +F+G S ++ +G    + G +G+GK++++ ++     P AGEVL  G  ++    E+   
Sbjct: 16  LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQD 75

Query: 332 LKWIRG-----KIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLP 386
           L ++ G     K  L + E + F   +        D  ++ E +A   LA    F D +P
Sbjct: 76  LLYL-GHQPGIKTELTALENLRFYQRLHGPG----DDEALWEALAQVGLA---GFED-VP 126

Query: 387 QGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALD 443
                       QLS GQ++R+A+AR  L    + +LDE  +A+D +    ++  L 
Sbjct: 127 VR----------QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLA 173

Length = 204

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 54.0 bits (131), Expect = 9e-08
 Identities = 52/189 (27%), Positives = 85/189 (44%), Gaps = 37/189 (19%)

Query: 279 FNGFSLSIPSGTTAA-----LVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLK-EFQL 332
              FSL +  G         +VG +G GK+T   L+     P  GEV  +   LK  ++ 
Sbjct: 350 LGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---LKISYKP 406

Query: 333 KWIRGKI-GLVSQEPVLFTSSIKDNI--NYGKDGASIAEIMAAAELANAAKFIDSLPQGL 389
           ++I+    G V         SI D++  +Y K           +E+          P  L
Sbjct: 407 QYIKPDYDGTVED----LLRSITDDLGSSYYK-----------SEIIK--------PLQL 443

Query: 390 DTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINR 449
           + ++ ++   LSGG+ QR+AIA  + +D  + LLDE ++ LD E    V +A+ +I   R
Sbjct: 444 ERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEER 503

Query: 450 --TTVIVAH 456
             T ++V H
Sbjct: 504 EATALVVDH 512

Length = 590

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 14/166 (8%)

Query: 272 SRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG--VNLKE 329
           S PG +  +  +L +   +  AL+G++G+GKST++  +   Y   +G +L  G  ++ K 
Sbjct: 7   SFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKS 66

Query: 330 FQLKWIRGKIGLVSQE-PVLFTSSIKDNI---NYGKDGASIAEIMAAAELANAAKFI-DS 384
            +     G I +V QE  ++   S+ DN+    Y   G  + +     ++    K I D 
Sbjct: 67  SKEALENG-ISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQ----DKMYRDTKAIFDE 121

Query: 385 LPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 430
           L   +D         LS  Q Q I IA+A   + +I+++DE TS+L
Sbjct: 122 L--DIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSL 165

Length = 491

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 45/209 (21%), Positives = 81/209 (38%), Gaps = 64/209 (30%)

Query: 258 RGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA 317
           R  +E++++   + + P   +F   +L + +G   A++G++G GK+T++  +    +P +
Sbjct: 317 RNALEVENLTKGFDNGP---LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDS 373

Query: 318 GEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMA---AAE 374
           G V            KW                 S   NI Y           A   A +
Sbjct: 374 GTV------------KW-----------------SENANIGY----------YAQDHAYD 394

Query: 375 LANAAKFID-----SLPQGLDTMV-GEHGTQL-------------SGGQKQRIAIARAIL 415
             N     D           +  V G  G  L             SGG+K R+   + ++
Sbjct: 395 FENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMM 454

Query: 416 KDPRILLLDEATSALDAESERVVQEALDK 444
           + P +L++DE T+ +D ES   +  AL+K
Sbjct: 455 QKPNVLVMDEPTNHMDMESIESLNMALEK 483

Length = 530

>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional

 Score = 49.9 bits (119), Expect = 5e-07
 Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 23/165 (13%)

Query: 280 NGFSLSI---PSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ---LK 333
           N F LSI   PS  T  + G +G GKS+++ +I     P +G +     N+         
Sbjct: 15  NLFDLSITFLPSAITY-IKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCT 73

Query: 334 WIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMV 393
           +I   +GL  +  V       +N+ +       +EI  +AE   AA     L   LD   
Sbjct: 74  YIGHNLGLKLEMTVF------ENLKFW------SEIYNSAETLYAAIHYFKLHDLLD--- 118

Query: 394 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVV 438
            E    LS G ++ +AIAR I     + LLDE  + L  E+  ++
Sbjct: 119 -EKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLL 162

Length = 195

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 51.5 bits (124), Expect = 6e-07
 Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 44/196 (22%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           IE +++   +  +    + +  S  +P G    ++G +G+GKST+  +I     P +G +
Sbjct: 323 IEAENLSKGFGDKL---LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379

Query: 321 LI-DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGK-------DGASI-----A 367
            I + V            K+  V Q         +D ++  K        G  I      
Sbjct: 380 KIGETV------------KLAYVDQS--------RDALDPNKTVWEEISGGLDIIQLGKR 419

Query: 368 EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 427
           E+ + A +     F  S  Q     VG    QLSGG++ R+ +A+ +     +LLLDE T
Sbjct: 420 EVPSRAYVG-RFNFKGSDQQ---KKVG----QLSGGERNRVHLAKTLKSGGNVLLLDEPT 471

Query: 428 SALDAESERVVQEALD 443
           + LD E+ R ++EAL 
Sbjct: 472 NDLDVETLRALEEALL 487

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters

 Score = 48.8 bits (117), Expect = 9e-07
 Identities = 48/193 (24%), Positives = 80/193 (41%), Gaps = 56/193 (29%)

Query: 264 KDIYFSYPSRPGE-QIFNGFSLSIPSGTTAALVGQSGSGKSTV---------ISLIERFY 313
           K++ ++ P + G+ Q+ N  S  +  GT  AL+G+SG+GK+T+           +I    
Sbjct: 7   KNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVIT--- 63

Query: 314 DPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAE-IMAA 372
               GE+LI+G  L     K  +   G V Q+ V   +             ++ E +  +
Sbjct: 64  ----GEILINGRPLD----KNFQRSTGYVEQQDVHSPNL------------TVREALRFS 103

Query: 373 AELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 432
           A L                        LS  Q++R+ I   +   P IL LDE TS LD+
Sbjct: 104 ALLRG----------------------LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDS 141

Query: 433 ESERVVQEALDKI 445
           ++   +   L K+
Sbjct: 142 QAAYNIVRFLKKL 154

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192

>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 48/204 (23%), Positives = 86/204 (42%), Gaps = 50/204 (24%)

Query: 266 IYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVI----SLIERFYDPQAGEVL 321
            + +   R    I   FS  +  G    ++G+ GSG ST++    +  E     + G++ 
Sbjct: 10  SFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVE-GDIH 68

Query: 322 IDGVNLKEFQLKWIRGKIGLVSQE----PVLFTSSIKDNINYGKDGASIAEIMAAAELAN 377
            +G+  KEF  K+  G+I  VS+E    P L                ++ E +  A    
Sbjct: 69  YNGIPYKEFAEKY-PGEIIYVSEEDVHFPTL----------------TVRETLDFALRCK 111

Query: 378 AAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERV 437
             +F+    +G+           SGG+++R++IA A++    +L  D +T  LD+ +   
Sbjct: 112 GNEFV----RGI-----------SGGERKRVSIAEALVSRASVLCWDNSTRGLDSST--- 153

Query: 438 VQEALDKIMINRTTVIVAHRLSTV 461
              AL+ +   RT   +A  L T 
Sbjct: 154 ---ALEILKCIRT---MADVLKTT 171

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 49.3 bits (118), Expect = 4e-06
 Identities = 54/208 (25%), Positives = 103/208 (49%), Gaps = 29/208 (13%)

Query: 245 DAYDSNGVKLDD--IRGDI-ELKDIYFSYPSRPGE-QIFNGFSLSIPSGTTAALVGQSGS 300
           ++ D N  K  +     DI   +++ +    +  +  I N     +  GT  AL+G SG+
Sbjct: 741 ESDDVNDEKDMEKESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGA 800

Query: 301 GKSTVIS-LIERFYDP--QAGEVLIDGVNLKE-FQLKWIRGKIGLVSQEPV-LFTSSIKD 355
           GK+T+++ L ER        G+ L++G  L   FQ       IG V Q+ + L TS++++
Sbjct: 801 GKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQR-----SIGYVQQQDLHLPTSTVRE 855

Query: 356 NINYGKDGASIAEIMAAAELANAAK--FIDSLPQGL------DTMVGEHGTQLSGGQKQR 407
           ++ +       A +     ++ + K  +++ + + L      D +VG  G  L+  Q++R
Sbjct: 856 SLRFS------AYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKR 909

Query: 408 IAIARAILKDPRILL-LDEATSALDAES 434
           + I   ++  P++LL LDE TS LD+++
Sbjct: 910 LTIGVELVAKPKLLLFLDEPTSGLDSQT 937

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 63/222 (28%), Positives = 97/222 (43%), Gaps = 27/222 (12%)

Query: 262 ELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 321
           +LKD++F           N  S  +P G    ++G +GSGKST+ +LI     P  G V 
Sbjct: 23  KLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVD 82

Query: 322 IDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAA-ELANAAK 380
           I G          I    GL  Q   +    +K  +  G     I EI+    E A+  K
Sbjct: 83  IKG------SAALIAISSGLNGQLTGIENIELK-GLMMGLTKEKIKEIIPEIIEFADIGK 135

Query: 381 FIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQE 440
           FI    Q + T         S G K R+  A ++  +P IL++DEA S  D   +   ++
Sbjct: 136 FIY---QPVKTY--------SSGMKSRLGFAISVHINPDILVIDEALSVGD---QTFTKK 181

Query: 441 ALDKI----MINRTTVIVAHRLSTVRNADLIAV-IHQGKLVE 477
            LDK+       +T   ++H LS V++    A+ +H G++ E
Sbjct: 182 CLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKE 223

Length = 549

>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional

 Score = 48.3 bits (115), Expect = 5e-06
 Identities = 55/230 (23%), Positives = 94/230 (40%), Gaps = 52/230 (22%)

Query: 283 SLSIPSGTTAALVGQSGSGKSTVISLI--------------ERFYDPQAGEVLIDGVNLK 328
           S+++  G    LVG+SGSGKS +   I               RF D       ID + L 
Sbjct: 27  SMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDD-------IDLLRLS 79

Query: 329 EFQL-KWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMA---------------- 371
             +  K +   + ++ QEP    S +  +   G+    +  I                  
Sbjct: 80  PRERRKLVGHNVSMIFQEP---QSCLDPSERVGRQ--LMQNIPGWTYKGRWWQRFGWRKR 134

Query: 372 -AAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 430
            A EL +     D         +     +L+ G+ Q++ IA A+   PR+L+ DE T+A+
Sbjct: 135 RAIELLHRVGIKDH-----KDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAM 189

Query: 431 DAESERVVQEALDKIMINRTTVI--VAHRLSTVRN-ADLIAVIHQGKLVE 477
           +  ++  +   L ++  N  T I  ++H L  +   AD I V++ G+ VE
Sbjct: 190 EPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVE 239

Length = 330

>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit

 Score = 48.5 bits (116), Expect = 7e-06
 Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 27/126 (21%)

Query: 363 GASIAEI--MAAAELANAAKFIDSLP---QGLDTMV---------GEHGTQLSGGQKQRI 408
           G +IA++  M   E   A +F +++P   + L T+          G+  T LSGG+ QRI
Sbjct: 782 GKNIADVLDMTVEE---AYEFFEAVPSISRKLQTLCDVGLGYIRLGQPATTLSGGEAQRI 838

Query: 409 AIARAILKD---PRILLLDEATSALDAESER----VVQEALDKIMINRTTVIVAHRLSTV 461
            +A+ + K      + +LDE T+ L  +  +    V+Q  +DK     T V++ H L  +
Sbjct: 839 KLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDK---GNTVVVIEHNLDVI 895

Query: 462 RNADLI 467
           + AD I
Sbjct: 896 KTADYI 901

This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 48.3 bits (115), Expect = 7e-06
 Identities = 51/204 (25%), Positives = 90/204 (44%), Gaps = 38/204 (18%)

Query: 277  QIFNGFSLSIPSGTTAALVGQSGSGKSTVISL---------IERFYDPQAGEVLIDGVNL 327
            Q+    + +   G   AL+G SG+GK+T++ +         IE       G++ I G   
Sbjct: 894  QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE-------GDIRISGFPK 946

Query: 328  KEFQLKWIRG--------KIGLVSQEPVLFTSSIKDNINYGKDGASI--AEIMAAAELAN 377
            K+     I G           +  +E +++++ ++      K+   +   E+M   EL N
Sbjct: 947  KQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDN 1006

Query: 378  AAKFIDSLPQGLDTMVGEHG-TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESER 436
                        D +VG  G T LS  Q++R+ IA  ++ +P I+ +DE TS LDA +  
Sbjct: 1007 LK----------DAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1056

Query: 437  VVQEAL-DKIMINRTTVIVAHRLS 459
            +V   + + +   RT V   H+ S
Sbjct: 1057 IVMRTVRNTVDTGRTVVCTIHQPS 1080

Length = 1470

>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair]

 Score = 48.3 bits (116), Expect = 8e-06
 Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 21/123 (17%)

Query: 363 GASIAEI--MAAAELANAAKFIDSLP---QGLDTMV---------GEHGTQLSGGQKQRI 408
           G +IA++  M   E   A +F +++P   + L T+V         G+  T LSGG+ QR+
Sbjct: 775 GKNIADVLDMTVEE---ALEFFEAIPKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRV 831

Query: 409 AIARAILK---DPRILLLDEATSALDAESERVVQEALDKIMINRTTVIV-AHRLSTVRNA 464
            +A+ + K      + +LDE T+ L  +  + + E L +++    TVIV  H L  ++ A
Sbjct: 832 KLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTA 891

Query: 465 DLI 467
           D I
Sbjct: 892 DWI 894

Length = 935

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 55/202 (27%), Positives = 88/202 (43%), Gaps = 36/202 (17%)

Query: 262 ELKDIYFSYPSRP------------GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLI 309
           E+ DIY  Y  RP            G  +    S S+ +G    L G  G+G+S ++ L+
Sbjct: 241 EIGDIY-GYRPRPLGEVRLRLDGLKGPGLREPISFSVRAGEIVGLFGLVGAGRSELMKLL 299

Query: 310 ERFYDPQAGEVLIDGVNLKEFQLKWIRGKI--GLV------SQEPVLFTSSIKDNINYGK 361
                  AG+V +DG   K   ++  R  I  G++        E ++   S+ DNIN   
Sbjct: 300 YGATRRTAGQVYLDG---KPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISA 356

Query: 362 DGASIAE---IMAAAELANAAKFIDSL---PQGLDTMVGEHGTQLSGGQKQRIAIARAIL 415
               +     I    E  NA +FI SL       + ++      LSGG +Q+  + R + 
Sbjct: 357 RRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIM----NLSGGNQQKAILGRWLS 412

Query: 416 KDPRILLLDEATSALD--AESE 435
           +D +++LLDE T  +D  A+ E
Sbjct: 413 EDMKVILLDEPTRGIDVGAKHE 434

Length = 501

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 58/228 (25%), Positives = 102/228 (44%), Gaps = 37/228 (16%)

Query: 271 PSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ-AGEVLIDGVNLK- 328
           P  P  +  +  S S+  G    + G  G+G++ ++  +   Y  +  GE+ IDG  +K 
Sbjct: 270 PVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKI 329

Query: 329 EFQLKWIRGKIGLVSQE-------PVLFTSSIKDNINYG--KDGASIAEIMAAAELANAA 379
               + I   I +V ++       PV+    +  NI           + I  AAEL    
Sbjct: 330 RNPQQAIAQGIAMVPEDRKRDGIVPVM---GVGKNITLAALDRFTGGSRIDDAAELKTIL 386

Query: 380 KFIDSL---PQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD--AES 434
           + I  L       +  +     +LSGG +Q+  +A+ +L +P+IL+LDE T  +D  A+ 
Sbjct: 387 ESIQRLKVKTASPELAIA----RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKY 442

Query: 435 E------RVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKL 475
           E      ++VQ+ +  I+I       +  L  V   +D + V+H+GKL
Sbjct: 443 EIYKLINQLVQQGVAIIVI-------SSELPEVLGLSDRVLVMHEGKL 483

Length = 506

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 44/172 (25%), Positives = 75/172 (43%), Gaps = 34/172 (19%)

Query: 283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLV 342
           + +I  G    LVG++G GKST+++L++       G     G     +QL W       V
Sbjct: 21  TATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPG----NWQLAW-------V 69

Query: 343 SQE-PVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTM--------- 392
           +QE P L   +++  I+  ++   +   +  A   N    I ++   LD +         
Sbjct: 70  NQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRA 129

Query: 393 ------VGEHGTQL-------SGGQKQRIAIARAILKDPRILLLDEATSALD 431
                 +G    QL       SGG + R+ +A+A++    +LLLDE T+ LD
Sbjct: 130 ASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLD 181

Length = 638

>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 18/166 (10%)

Query: 272 SRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ 331
           SR  E +F      + +G    + G +G+GK+T++ ++      ++G++ IDG       
Sbjct: 20  SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD 79

Query: 332 LKWIRGK-IGLVSQEPVLFTS-SIKDNINY--GKDGASIAEIMAAAELANAAKFIDSLPQ 387
               R + +  +   P L    S  +N+++  G  G   A+ M  + LA     I  L  
Sbjct: 80  ----RSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRR-AKQMPGSALA-----IVGLAG 129

Query: 388 GLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 433
             DT+V     QLS GQK+R+A+AR  L    + LLDE  + LD E
Sbjct: 130 YEDTLV----RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLE 171

Length = 214

>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 42/191 (21%), Positives = 76/191 (39%), Gaps = 47/191 (24%)

Query: 280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339
               +SIP      + G SGSGKST+++  E  Y       LI    L +F         
Sbjct: 12  QNLDVSIPLNVLVVVTGVSGSGKSTLVN--EGLYA-SGKARLISF--LPKF--------- 57

Query: 340 GLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQ 399
              S+  ++F   ++  I+ G    ++ + ++                            
Sbjct: 58  ---SRNKLIFIDQLQFLIDVGLGYLTLGQKLST--------------------------- 87

Query: 400 LSGGQKQRIAIARAILKDPR--ILLLDEATSALDAESERVVQEALDKIMINRTTVIVA-H 456
           LSGG+ QR+ +A  +  +P   + +LDE ++ L  +    + E +  ++    TVI+  H
Sbjct: 88  LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147

Query: 457 RLSTVRNADLI 467
            L  + +AD I
Sbjct: 148 NLDVLSSADWI 158

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176

>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 4/96 (4%)

Query: 360 GKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR 419
           G    +  +I+A   + N     D    G+  +       LSGG+ QR+AIA A+L++  
Sbjct: 35  GTGKTTAVKILAGQLIPNGDN--DEWD-GITPVYKPQYIDLSGGELQRVAIAAALLRNAT 91

Query: 420 ILLLDEATSALDAESERVVQEALDK-IMINRTTVIV 454
             L DE ++ LD E       A+ +     + T +V
Sbjct: 92  FYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALV 127

The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 46.5 bits (111), Expect = 3e-05
 Identities = 17/37 (45%), Positives = 27/37 (72%)

Query: 398 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 434
           + LSGG  ++ A+ RA++ +P +LLLDE T+ LD E+
Sbjct: 155 SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIET 191

Length = 635

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 45.5 bits (108), Expect = 6e-05
 Identities = 44/179 (24%), Positives = 82/179 (45%), Gaps = 21/179 (11%)

Query: 294 LVGQSGSGKST----VISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLF 349
           ++G+ GSG ST    + S  + F+    G +  DG+  +E + K  RG +   ++  V F
Sbjct: 92  VLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHF 150

Query: 350 TS-SIKDNINY-------GKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQ-L 400
              ++ + +++             ++    A  +A+       L    +T VG    + +
Sbjct: 151 PHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGV 210

Query: 401 SGGQKQRIAIARAILKDPRILLLDEATSALDA----ESERVVQEALDKIMINRTTVIVA 455
           SGG+++R++IA A L   +I   D AT  LD+    E  R ++ + +   I  TT +VA
Sbjct: 211 SGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSAN---ILDTTPLVA 266

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 44.1 bits (104), Expect = 9e-05
 Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 3/82 (3%)

Query: 399 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVI--VAH 456
           +L+ G+ Q++ IA A+   PR+L+ DE T++++  ++  +   L ++  N  T I  ++H
Sbjct: 158 ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISH 217

Query: 457 RLSTVRN-ADLIAVIHQGKLVE 477
            L  +   AD I V++ G+ VE
Sbjct: 218 DLQMISQWADKINVLYCGQTVE 239

Length = 330

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 53/193 (27%), Positives = 88/193 (45%), Gaps = 44/193 (22%)

Query: 294 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW--------------IRGKI 339
           L+G +G GKST + ++    +P AG V +D  N +  +L+               I G  
Sbjct: 32  LIGANGCGKSTFMKILGGDLEPSAGNVSLD-PNERLGKLRQDQFAFEEFTVLDTVIMGHT 90

Query: 340 GL--VSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFID-----------SLP 386
            L  V QE        +D I Y     S  + M  A+L    KF +            L 
Sbjct: 91  ELWEVKQE--------RDRI-YALPEMSEEDGMKVADLE--VKFAEMDGYTAEARAGELL 139

Query: 387 QGLDTMVGEHG---TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALD 443
            G+     +H    ++++ G K R+ +A+A+  +P ILLLDE T+ LD  + R +++ L+
Sbjct: 140 LGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLN 199

Query: 444 KIMINRTTVIVAH 456
           +   N T +I++H
Sbjct: 200 E--RNSTMIIISH 210

Length = 530

>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 59/220 (26%), Positives = 89/220 (40%), Gaps = 39/220 (17%)

Query: 271 PSRPGEQIF--NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLK 328
           P    +  F  +  SL    G    LVG +GSGKST+ ++I     P  G+V  +G    
Sbjct: 30  PKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG---- 85

Query: 329 EFQLKWIRGKIGLVSQEPVLFTSSIKDNINY-----GKDGASIAEIMAA-AELANAAKFI 382
             ++  I    GL  Q   +      +NI +     G     I  +     E +   +FI
Sbjct: 86  --EVSVIAISAGLSGQLTGI------ENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFI 137

Query: 383 DSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEAL 442
               +           + S G + ++  +  I  +P IL++DEA S  D   +   Q+ L
Sbjct: 138 YQPVK-----------KYSSGMRAKLGFSINITVNPDILVIDEALSVGD---QTFAQKCL 183

Query: 443 DKIM----INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477
           DKI      N+T   V+H L  VR     IA I  GKL +
Sbjct: 184 DKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKD 223

Length = 264

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 399 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAH 456
             SGG + RIA+ARA+  +P +LLLDE T+ LD  +   ++  L K    +T ++V+H
Sbjct: 344 TFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLK--WPKTFIVVSH 399

Length = 718

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 41.9 bits (99), Expect = 7e-04
 Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 2/57 (3%)

Query: 400 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAH 456
           LSGG++ R+ +AR  LK   +L+LDE T+ LD E+  +++E LD      T ++V+H
Sbjct: 441 LSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDS--YQGTVLLVSH 495

Length = 635

>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 5/75 (6%)

Query: 399 QLSGGQKQRIAIARAI---LKDPRIL-LLDEATSALDAESERVVQEALDKIMINRTTVIV 454
           QLSGG+K+  A+A  +      PR L +LDE    LD    + + EA+ + ++    VIV
Sbjct: 77  QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIV 136

Query: 455 A-HRLSTVRNADLIA 468
             H       AD + 
Sbjct: 137 ITHLPELAELADKLI 151

ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 400 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVI-VAHRL 458
           LSGG +Q++ IA+ +   P++L++DE T  +D  +   + + +  I      V+ ++  L
Sbjct: 404 LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDL 463

Query: 459 STVRN-ADLIAVIHQGKL 475
             +   AD + V+HQG++
Sbjct: 464 EEIEQMADRVLVMHQGEI 481

Length = 510

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 16/32 (50%), Positives = 25/32 (78%)

Query: 400 LSGGQKQRIAIARAILKDPRILLLDEATSALD 431
           LSGG +Q++AIAR ++  P++L+LDE T  +D
Sbjct: 396 LSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427

Length = 501

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 40.8 bits (95), Expect = 0.002
 Identities = 56/246 (22%), Positives = 101/246 (41%), Gaps = 53/246 (21%)

Query: 240  RKPLIDAYD----------SNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSG 289
            ++P+ D  D          S G K D +R + EL  +Y S  S P     +   + +  G
Sbjct: 1911 KEPIFDEDDDVAEERQRIISGGNKTDILRLN-ELTKVY-SGTSSPA---VDRLCVGVRPG 1965

Query: 290  TTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLF 349
                L+G +G+GK+T   ++       +G+  + G        K I   I          
Sbjct: 1966 ECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAG--------KSILTNI---------- 2007

Query: 350  TSSIKDNINYGKDGASIAEIMA---------------AAELANAAKF-IDSLPQGLDTMV 393
             S +  N+ Y     +I +++                A E+   A + I SL  GL    
Sbjct: 2008 -SDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSL--GLSLYA 2064

Query: 394  GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMIN-RTTV 452
                   SGG K++++ A A++  P ++LLDE T+ +D ++ R++   +  I+   R  V
Sbjct: 2065 DRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVV 2124

Query: 453  IVAHRL 458
            + +H +
Sbjct: 2125 LTSHSM 2130

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 400 LSGGQKQRIAIARAILKDPRILLLDEATSALD 431
           LSGG +Q++ I R +L  P IL+LDE T  +D
Sbjct: 392 LSGGNQQKVIIGRWLLTQPEILMLDEPTRGID 423

Length = 491

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 262 ELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           E++++ +      G+Q+   FS  +  G   AL+G +G GK+T++ L+       +G +
Sbjct: 321 EMENVNYQID---GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI 376

Length = 635

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 9/68 (13%)

Query: 398 TQLSGGQKQ------RIAIARAILKDPRI--LLLDEATSALDAESERVVQEALDKI-MIN 448
             LSGG++       R+A++  +    R+  L LDE    LD E    + E L+++    
Sbjct: 814 KTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDG 873

Query: 449 RTTVIVAH 456
           R  +I++H
Sbjct: 874 RQIIIISH 881

Length = 908

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 39.3 bits (93), Expect = 0.004
 Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 48/198 (24%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           IE +++  S+  R    + +  S S+P G    ++G +G+GKST+  +I     P +G +
Sbjct: 325 IEAENLSKSFGDR---LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI 381

Query: 321 LI-DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGK-------DGASI-----A 367
            I + V            K+  V Q         +D ++  K        G  I      
Sbjct: 382 KIGETV------------KLAYVDQS--------RDALDPNKTVWEEISGGLDIIKVGNR 421

Query: 368 EIMAAAELANAAKFIDSLPQGLDT--MVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 425
           EI + A +     F     +G D    VG     LSGG++ R+ +A+ + +   +LLLDE
Sbjct: 422 EIPSRAYVG-RFNF-----KGGDQQKKVG----VLSGGERNRLHLAKTLKQGGNVLLLDE 471

Query: 426 ATSALDAESERVVQEALD 443
            T+ LD E+ R ++EAL 
Sbjct: 472 PTNDLDVETLRALEEALL 489

Length = 556

>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 12/58 (20%)

Query: 399 QLSGGQKQR---IAIARAIL---------KDPRILLLDEATSALDAESERVVQEALDK 444
            LSGG+KQ    +A+A A+            PR++ LDEA + LD E+ R + E L +
Sbjct: 22  TLSGGEKQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLDEENIRSLLELLRE 79

Possible exonuclease SbcCD, C subunit, on AAA proteins. Length = 79

>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional

 Score = 39.8 bits (93), Expect = 0.004
 Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 21/123 (17%)

Query: 363 GASIAEI--MAAAELANAAKFIDSLPQ-----------GLDTM-VGEHGTQLSGGQKQRI 408
           G +IA+I  M A E   A KF    P            GLD + +G   + LSGG+ QR+
Sbjct: 762 GKNIADILEMTAYE---AEKFFLDEPSIHEKIHALCSLGLDYLPLGRPLSSLSGGEIQRL 818

Query: 409 AIARAIL---KDPRILLLDEATSALDAES-ERVVQEALDKIMINRTTVIVAHRLSTVRNA 464
            +A  +L   K P + +LDE T+ L     + ++           T VI+ H +  V+ A
Sbjct: 819 KLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVA 878

Query: 465 DLI 467
           D +
Sbjct: 879 DYV 881

Length = 1809

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	478
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	100.0
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	100.0
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	100.0
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	100.0
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	100.0
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	100.0
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	100.0
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	100.0
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	100.0
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	100.0
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	100.0
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	100.0
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	100.0
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	100.0
COG4988	559	CydD ABC-type transport system involved in cytochr	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	100.0
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	100.0
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	100.0
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	100.0
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	100.0
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	100.0
COG4987	573	CydC ABC-type transport system involved in cytochr	100.0
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	100.0
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	100.0
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	100.0
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	100.0
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
KOG0054	1381	consensus Multidrug resistance-associated protein/	100.0
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
PRK10522	547	multidrug transporter membrane component/ATP-bindi	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
KOG0054	1381	consensus Multidrug resistance-associated protein/	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	100.0
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	100.0
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	100.0
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	100.0
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	100.0
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	100.0
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	100.0
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	100.0
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	100.0
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
COG2884	223	FtsE Predicted ATPase involved in cell division [C	100.0
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	100.0
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	100.0
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	100.0
COG4178	604	ABC-type uncharacterized transport system, permeas	100.0
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	100.0
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	100.0
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	100.0
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	100.0
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	100.0
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	100.0
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	100.0
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	100.0
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	100.0
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	100.0
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	100.0
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	100.0
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	100.0
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	100.0
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	100.0
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	100.0
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	100.0
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	100.0
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	100.0
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	100.0
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	100.0
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	100.0
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	100.0
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	100.0
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	100.0
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	100.0
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	100.0
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	100.0
PRK10908	222	cell division protein FtsE; Provisional	100.0
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	100.0
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	100.0
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	100.0
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	100.0
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	100.0
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	100.0
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	100.0
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	100.0
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	100.0
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	100.0
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	100.0
cd03246	173	ABCC_Protease_Secretion This family represents the	100.0
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	100.0
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13537	306	nodulation ABC transporter NodI; Provisional	100.0
cd03269	210	ABC_putative_ATPase This subfamily is involved in	100.0
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	100.0
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	100.0
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	100.0
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	100.0
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	100.0
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	100.0
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	100.0
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	100.0
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	100.0
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	100.0
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	100.0
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	100.0
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	100.0
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	100.0
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	100.0
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	100.0
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	100.0
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	100.0
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	100.0
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	100.0
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	100.0
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	100.0
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	100.0
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	100.0
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	100.0
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	100.0
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	100.0
cd03234	226	ABCG_White The White subfamily represents ABC tran	100.0
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	100.0
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	100.0
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	100.0
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	100.0
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	100.0
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	100.0
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	100.0
PRK13536	340	nodulation factor exporter subunit NodI; Provision	100.0
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	100.0
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	100.0
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	100.0
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	100.0
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	100.0
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	100.0
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	100.0
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	100.0
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	100.0
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	100.0
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	100.0
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	100.0
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	100.0
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	100.0
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	100.0
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	100.0
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	100.0
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	100.0
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	100.0
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	100.0
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	100.0
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	100.0
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	100.0
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	100.0
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG0410	237	LivF ABC-type branched-chain amino acid transport	100.0
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	100.0
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	100.0
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	100.0
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK09984	262	phosphonate/organophosphate ester transporter subu	100.0
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	100.0
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	100.0
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	100.0
cd03299	235	ABC_ModC_like Archeal protein closely related to M	100.0
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	100.0
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	100.0
cd03215	182	ABC_Carb_Monos_II This family represents domain II	100.0
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	100.0
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	100.0
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	100.0
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	100.0
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	100.0
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	100.0
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	100.0
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	100.0
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	100.0
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	100.0
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	100.0
cd03216	163	ABC_Carb_Monos_I This family represents the domain	100.0
COG4181	228	Predicted ABC-type transport system involved in ly	100.0
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	100.0
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
COG4619	223	ABC-type uncharacterized transport system, ATPase	100.0
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	100.0
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	100.0
PRK03695	248	vitamin B12-transporter ATPase; Provisional	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	100.0
COG0411	250	LivG ABC-type branched-chain amino acid transport	100.0
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	100.0
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	100.0
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	100.0
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	100.0
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
COG3845	501	ABC-type uncharacterized transport systems, ATPase	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
COG4559	259	ABC-type hemin transport system, ATPase component	100.0
PRK10535	648	macrolide transporter ATP-binding /permease protei	100.0
COG4525	259	TauB ABC-type taurine transport system, ATPase com	100.0
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
PLN03211	659	ABC transporter G-25; Provisional	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	100.0
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	100.0
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
PRK13546	264	teichoic acids export protein ATP-binding subunit;	100.0
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	100.0
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
COG4598	256	HisP ABC-type histidine transport system, ATPase c	100.0
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	100.0
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
COG4152	300	ABC-type uncharacterized transport system, ATPase	100.0
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	100.0
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	100.0
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	100.0
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	100.0
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	100.0
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
PRK13409	590	putative ATPase RIL; Provisional	100.0
PLN03073	718	ABC transporter F family; Provisional	100.0
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
COG4674	249	Uncharacterized ABC-type transport system, ATPase	100.0
PRK13409	590	putative ATPase RIL; Provisional	100.0
COG4136	213	ABC-type uncharacterized transport system, ATPase	100.0
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
COG0488	530	Uup ATPase components of ABC transporters with dup	100.0
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
PLN03073	718	ABC transporter F family; Provisional	100.0
PF00005	137	ABC_tran: ABC transporter This structure is on hol	100.0
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	100.0
COG4586	325	ABC-type uncharacterized transport system, ATPase	100.0
COG4133	209	CcmA ABC-type transport system involved in cytochr	100.0
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	100.0
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	100.0
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.98
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.98
COG0488	530	Uup ATPase components of ABC transporters with dup	99.98
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.97
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.97
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	99.97
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.97
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.96
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.96
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.96
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.95
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.95
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.95
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.95
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.94
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.94
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.93
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.93
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.93
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.92
PF00664	275	ABC_membrane: ABC transporter transmembrane region	99.91
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.91
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.91
KOG0062	582	consensus ATPase component of ABC transporters wit	99.91
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.91
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.9
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.89
KOG0062	582	consensus ATPase component of ABC transporters wit	99.89
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.89
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	99.88
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.88
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.86
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.86
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.85
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.83
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.83
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.82
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.82
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.79
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.79
cd01128	249	rho_factor Transcription termination factor rho is	99.78
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.76
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.76
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.75
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.74
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	99.72
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.7
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.69
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	99.66
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.66
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.65
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.65
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	99.64
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	99.62
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	99.59
PRK00064	361	recF recombination protein F; Reviewed	99.58
PHA02562	562	46 endonuclease subunit; Provisional	99.51
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	99.5
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	99.49
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	99.49
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	99.44
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	99.41
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.41
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	99.39
PRK10869	553	recombination and repair protein; Provisional	99.38
PRK14079	349	recF recombination protein F; Provisional	99.34
TIGR00611	365	recf recF protein. All proteins in this family for	99.34
PRK13695	174	putative NTPase; Provisional	99.31
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	99.3
PRK00409	782	recombination and DNA strand exchange inhibitor pr	99.28
PRK08533	230	flagellar accessory protein FlaH; Reviewed	99.28
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	99.24
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	99.21
PRK01156	895	chromosome segregation protein; Provisional	99.19
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	99.18
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	99.17
PRK03918	880	chromosome segregation protein; Provisional	99.17
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.13
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	99.12
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	99.12
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	99.11
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	99.1
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	99.09
PRK13830	818	conjugal transfer protein TrbE; Provisional	99.07
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	99.07
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.05
smart00382	148	AAA ATPases associated with a variety of cellular	99.01
PRK10246	1047	exonuclease subunit SbcC; Provisional	98.99
COG3910	233	Predicted ATPase [General function prediction only	98.99
PRK06067	234	flagellar accessory protein FlaH; Validated	98.98
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	98.96
TIGR00767	415	rho transcription termination factor Rho. Members	98.95
PRK00300	205	gmk guanylate kinase; Provisional	98.93
PRK02224	880	chromosome segregation protein; Provisional	98.91
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.87
PRK13891	852	conjugal transfer protein TrbE; Provisional	98.72
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.71
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	98.69
PRK11098	409	microcin B17 transporter; Reviewed	98.68
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.65
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	98.63
PRK12369	326	putative transporter; Reviewed	98.62
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	98.61
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	98.6
PF09818	448	ABC_ATPase: Predicted ATPase of the ABC class; Int	98.59
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.57
PRK01889	356	GTPase RsgA; Reviewed	98.56
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	98.55
PRK08149	428	ATP synthase SpaL; Validated	98.54
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.48
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.47
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	98.43
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	98.42
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.37
PRK13898	800	type IV secretion system ATPase VirB4; Provisional	98.37
PRK09825	176	idnK D-gluconate kinase; Provisional	98.36
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	98.36
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.36
TIGR00101	199	ureG urease accessory protein UreG. This model rep	98.35
PRK09183	259	transposase/IS protein; Provisional	98.34
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.33
PRK10416	318	signal recognition particle-docking protein FtsY;	98.33
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.33
PLN02796	347	D-glycerate 3-kinase	98.28
PF06472	281	ABC_membrane_2: ABC transporter transmembrane regi	98.27
PRK05399	854	DNA mismatch repair protein MutS; Provisional	98.25
COG3044	554	Predicted ATPase of the ABC class [General functio	98.24
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	98.23
PRK06315	442	type III secretion system ATPase; Provisional	98.22
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	98.22
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	98.2
PRK13873	811	conjugal transfer ATPase TrbE; Provisional	98.18
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	98.15

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.7e-103  Score=823.52  Aligned_cols=474  Identities=44%  Similarity=0.709  Sum_probs=456.2

Q ss_pred             eehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 048556            2 ACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGW   81 (478)
Q Consensus         2 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (478)
                      +|+..++.++..++|.++|+++++++.+|||+. ++||+++|++.|+..+.+.+...+...+.+.+..++.+.+|+++||
T Consensus       210 ~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~n-ktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~  288 (716)
T KOG0058|consen  210 GLLQYAGERVVARLRTDLFRSLLRQDIAFFDEN-KTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSW  288 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccC-CccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhH
Confidence            588999999999999999999999999999998 8999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           82 LLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEG  161 (478)
Q Consensus        82 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~  161 (478)
                      .|+++.++.+|+++++..+++++.++..++.+++.++.++..+|.+++++|||+|+.|+.+.+||.+..++..+...+..
T Consensus       289 ~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a  368 (716)
T KOG0058|consen  289 RLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEA  368 (716)
T ss_pred             HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 048556          162 LAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERK  241 (478)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~  241 (478)
                      .....+.....+...+..+.++++|++++.+|.+|.|.+++|+.|...+..++..+...++.+.++..|.+|++|+++.+
T Consensus       369 ~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~  448 (716)
T KOG0058|consen  369 VAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRK  448 (716)
T ss_pred             HHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccC
Confidence            88888888888999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEE
Q 048556          242 PLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL  321 (478)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~  321 (478)
                      |..+..  +...+....+.|+|+||+|+||.+++.++|+|+||+|+|||+||+|||||+||||++++|.++|+|++|+|.
T Consensus       449 P~i~~~--G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Il  526 (716)
T KOG0058|consen  449 PRIPLT--GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRIL  526 (716)
T ss_pred             CCCCCC--CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE
Confidence            865533  111222456899999999999999888999999999999999999999999999999999999999999999


Q ss_pred             ECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 048556          322 IDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLS  401 (478)
Q Consensus       322 ~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LS  401 (478)
                      +||+|++++++..+|++||+|.|||.||++||+|||.||.+++++|++..|++.+++|+||..+|+||||.+||+|..||
T Consensus       527 lDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLS  606 (716)
T KOG0058|consen  527 LDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLS  606 (716)
T ss_pred             ECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556          402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK  478 (478)
Q Consensus       402 gGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~  478 (478)
                      |||||||||||||++||.||||||+|||||.++|..+.++|.+..+++|||+|+||++++++||+|+|+++|+++|.
T Consensus       607 GGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~  683 (716)
T KOG0058|consen  607 GGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEM  683 (716)
T ss_pred             chHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEec
Confidence            99999999999999999999999999999999999999999999899999999999999999999999999999874

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=100.00  E-value=3.2e-96  Score=795.37  Aligned_cols=472  Identities=34%  Similarity=0.540  Sum_probs=451.8

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556            3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL   82 (478)
Q Consensus         3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (478)
                      +..+.+.|+..++-.++|+|++++|..||+++ ++||+++|+. |.+++.++++..+...+.+++++++.+++|++++|.
T Consensus       217 ~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r-~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~  294 (709)
T COG2274         217 LIAHLGKRLDLELSGRFFRHLLRLPLSYFEKR-SVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWK  294 (709)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHcCcHHHccCC-ChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788999999999999999999999999999 8999999996 799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL  162 (478)
Q Consensus        83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  162 (478)
                      +++++++.+|+++++..++.+.+++..++..+..++.++.+.|++.|++++|+.+.|+++..+|++...++.+..++..+
T Consensus       295 L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~  374 (709)
T COG2274         295 LTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEK  374 (709)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556          163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP  242 (478)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~  242 (478)
                      .......+..++..+..++++|+|+++|++|++|+|.++++..+...+..|+..+.+.+..+++...+.+|+.++++.++
T Consensus       375 ~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~  454 (709)
T COG2274         375 LALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPP  454 (709)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             CcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556          243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI  322 (478)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~  322 (478)
                      |.+... .....+...++|+++||+|+|+.+ ++++|+|+|++|+|||++||||+||||||||+|+|+|+|+|++|+|++
T Consensus       455 E~~~~~-~~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~  532 (709)
T COG2274         455 EQEGDK-TLIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILL  532 (709)
T ss_pred             cccccc-ccccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence            644322 112345566899999999999865 357999999999999999999999999999999999999999999999


Q ss_pred             CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 048556          323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSG  402 (478)
Q Consensus       323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg  402 (478)
                      ||.|+.+++..++|++|+||+||+.+|+|||+||+++++|++++|++++||+.++++++|.++|.||+|.+||+|.+|||
T Consensus       533 dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSG  612 (709)
T COG2274         533 DGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSG  612 (709)
T ss_pred             CCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556          403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK  478 (478)
Q Consensus       403 Gq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~  478 (478)
                      ||||||+|||||+++|+||||||||||||+++|+.|.++|.+...++|+|+||||++++++||||+|||+|+|+|+
T Consensus       613 GQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~  688 (709)
T COG2274         613 GQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQ  688 (709)
T ss_pred             HHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceecc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999974

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=3e-93  Score=783.60  Aligned_cols=477  Identities=48%  Similarity=0.799  Sum_probs=452.7

Q ss_pred             eehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 048556            2 ACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGW   81 (478)
Q Consensus         2 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (478)
                      |++...|+++..++|.++|+++++++..|||+..++|.+.+|+.+|...++..+...+..++..+..+++.+++.|+++|
T Consensus       729 ~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W  808 (1228)
T KOG0055|consen  729 YFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGW  808 (1228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46888999999999999999999999999997667799999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           82 LLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEG  161 (478)
Q Consensus        82 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~  161 (478)
                      .++++.+...|++++......+.+.....+.....++..+...|++++++||++|+.|+++.+.|.+..++..+...+..
T Consensus       809 ~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~  888 (1228)
T KOG0055|consen  809 RLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRG  888 (1228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 048556          162 LAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERK  241 (478)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~  241 (478)
                      .+.++...+.+++..+...+++|+|++++.+|.++..+++-++..+......+.+.....+.+.+++.|+.+++++++++
T Consensus       889 ~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~  968 (1228)
T KOG0055|consen  889 LISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRK  968 (1228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999988877777777788888888999999999999999999998


Q ss_pred             CCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEE
Q 048556          242 PLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL  321 (478)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~  321 (478)
                      |..+...+.+...+..+|+|+++||+|+||.+|+.++|+|+||+|++|+.+||||||||||||++.||.|+|+|++|.|.
T Consensus       969 ~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~ 1048 (1228)
T KOG0055|consen  969 PTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVK 1048 (1228)
T ss_pred             CCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE
Confidence            75443222233345567899999999999999989999999999999999999999999999999999999999999999


Q ss_pred             ECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 048556          322 IDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLS  401 (478)
Q Consensus       322 ~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LS  401 (478)
                      +||+|+++++.+.+|++++.|+|+|.||++||||||+||.+.++.+|+.+|++.+.+|+||.+||+||||.+||+|.+||
T Consensus      1049 IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLS 1128 (1228)
T KOG0055|consen 1049 IDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLS 1128 (1228)
T ss_pred             ECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCC
Confidence            99999999999999999999999999999999999999966689999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556          402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK  478 (478)
Q Consensus       402 gGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~  478 (478)
                      ||||||||||||++|||+||||||+|||||.++|+.+.++|.+...+||+|+|+||++++++||.|+|+++|+|+|+
T Consensus      1129 GGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~ 1205 (1228)
T KOG0055|consen 1129 GGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQ 1205 (1228)
T ss_pred             chHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999985

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=1.8e-89  Score=745.00  Aligned_cols=470  Identities=24%  Similarity=0.303  Sum_probs=416.8

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556            3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL   82 (478)
Q Consensus         3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (478)
                      +..+.+.++..++|.++|+|++++|+.+|++. ++|++++|+++|++.+++++...++.++..++.++++++++++++|.
T Consensus        86 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~-~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  164 (588)
T PRK11174         86 VGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGK-PAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWA  164 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCchhhccC-CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567889999999999999999999999998 89999999999999999999999999999988888888899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL  162 (478)
Q Consensus        83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  162 (478)
                      +++++++++|+.+++..++.++.++..++.++..++.++.+.|.++|+++||+|++|+.+.++|++..+++.+...+..+
T Consensus       165 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  244 (588)
T PRK11174        165 AGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLR  244 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999888888889999999999999999999999999999999999999999999999999999888887777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556          163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDV---------INVIFCVMIGSMSLGQASPCISAFAAGQAAAYK  233 (478)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l---------~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~r  233 (478)
                      .......+..++..+..+++++++++.+ .|.+|+|++         ++++.+...+..|+..+...+..++++.++.+|
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~r  323 (588)
T PRK11174        245 MAFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAES  323 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7666666666666655555555555544 488888864         111233345567999999999999999999999


Q ss_pred             HHHHHccCCCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          234 LFEAIERKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       234 i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +.++++.+++..... +...+....+.|+++||+|.|++  ++++|+|+||+|+|||++|||||||||||||+++|+|+|
T Consensus       324 i~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~  400 (588)
T PRK11174        324 LVTFLETPLAHPQQG-EKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL  400 (588)
T ss_pred             HHHHHcCCCcccCCC-ccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            999998654322111 10111112346999999987764  357999999999999999999999999999999999999


Q ss_pred             CCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccc
Q 048556          314 DPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMV  393 (478)
Q Consensus       314 ~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~  393 (478)
                       |++|+|.+||+|+.+++.+++|++|+||||+|++|+|||+|||++++|+++++|++++++.++++++++.+|+||||.+
T Consensus       401 -p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~v  479 (588)
T PRK11174        401 -PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPI  479 (588)
T ss_pred             -CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhccccccccc
Confidence             9999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCC
Q 048556          394 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQG  473 (478)
Q Consensus       394 ~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G  473 (478)
                      ||+|.+|||||||||+||||++++|++||||||||+||++++++|.+.|++..+++|+|+||||+++++.||+|++|++|
T Consensus       480 ge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G  559 (588)
T PRK11174        480 GDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDG  559 (588)
T ss_pred             ccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCC
Confidence            99999999999999999999999999999999999999999999999999988899999999999999999999999999


Q ss_pred             EEeeC
Q 048556          474 KLVEK  478 (478)
Q Consensus       474 ~i~~~  478 (478)
                      +++|+
T Consensus       560 ~i~e~  564 (588)
T PRK11174        560 QIVQQ  564 (588)
T ss_pred             eEeec
Confidence            99874

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=100.00  E-value=4.4e-88  Score=730.93  Aligned_cols=470  Identities=36%  Similarity=0.605  Sum_probs=437.2

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556            3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL   82 (478)
Q Consensus         3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (478)
                      +..+.+.+...++|.++|++++++|+.+|++. ++|++++|+++|++.++..+......+...++.+++.+++++..+|.
T Consensus        75 ~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~-~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (567)
T COG1132          75 LGSRLGQKIVADLRRDLFEKLLRLPLSFFDKA-KSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWR  153 (567)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHhCcC-CcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            45567789999999999999999999999998 89999999999999999999998666665788888888899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL  162 (478)
Q Consensus        83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  162 (478)
                      +++++++..|++.+...++.++.++..+..++..+++++.+.|.++|++++|+|+.++...+++.+..++..+...+..+
T Consensus       154 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (567)
T COG1132         154 LALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASR  233 (567)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998988888888888999999999999999999999999999999999999999999999998888888788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556          163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP  242 (478)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~  242 (478)
                      ..+...+...++..+...+++++|++++..+.+++|.+++++.+...+..|+..+...+..+..+..+++|++++++.++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~  313 (567)
T COG1132         234 LEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEP  313 (567)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            88888888889999999999999999999999999999999999999999999999999999999999999999999866


Q ss_pred             CcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556          243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI  322 (478)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~  322 (478)
                      +..+...   ......++|+|+||+|+|++  ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++
T Consensus       314 ~~~~~~~---~~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~i  388 (567)
T COG1132         314 EVEDPPD---PLKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI  388 (567)
T ss_pred             cccCCCC---CCCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEE
Confidence            4332211   12223467999999999974  358999999999999999999999999999999999999999999999


Q ss_pred             CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 048556          323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSG  402 (478)
Q Consensus       323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg  402 (478)
                      ||+|+++++.+++|++|+||||+++||++||+|||.+|+|++++||+++|++.++++|+++++|+||||.+||+|.+|||
T Consensus       389 dg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSg  468 (567)
T COG1132         389 DGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSG  468 (567)
T ss_pred             CCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556          403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK  478 (478)
Q Consensus       403 Gq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~  478 (478)
                      ||||||+||||++++||++|||||||+||+++|+.|.+.+.+..++||+|+||||++++++||+|+|||+|+++|.
T Consensus       469 GQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~  544 (567)
T COG1132         469 GQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVER  544 (567)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEe
Confidence            9999999999999999999999999999999999999999988888999999999999999999999999999874

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=2.3e-90  Score=760.86  Aligned_cols=476  Identities=61%  Similarity=1.000  Sum_probs=454.2

Q ss_pred             eehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 048556            2 ACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGW   81 (478)
Q Consensus         2 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (478)
                      .||.+.+.|...++|..+++.+++++..|||.. .+|++.+++++|++.+++.+..-+..++..+..++..+++.|+.+|
T Consensus        93 ~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~-~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~~W  171 (1228)
T KOG0055|consen   93 SCWMRTGERQTARIRSKYLKAILRQDIGWFDTN-STGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYYGW  171 (1228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCccceeecc-cccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            599999999999999999999999999999998 7899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           82 LLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEG  161 (478)
Q Consensus        82 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~  161 (478)
                      +++++++.+.|++.+....+.+.+.+...+.++++++..+..+|++.+++|+.+|+-|+.+.++|.+..+...+...+..
T Consensus       172 ~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g  251 (1228)
T KOG0055|consen  172 KLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKG  251 (1228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 048556          162 LAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERK  241 (478)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~  241 (478)
                      .+.++...+..++........+|+|+.++..+..+.|+++.++..+......+.+..+.+..+..+.+|+.++++.++..
T Consensus       252 ~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~  331 (1228)
T KOG0055|consen  252 LFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRK  331 (1228)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCC
Confidence            99999999999999999999999999999999999999998887777777889999999999999999999999999987


Q ss_pred             CCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEE
Q 048556          242 PLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL  321 (478)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~  321 (478)
                      |..+....++.......+.|+|+||+|+||.+++.++|+|+||+|++|+++||||||||||||++++|.|+|+|++|+|+
T Consensus       332 ~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~  411 (1228)
T KOG0055|consen  332 PSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVL  411 (1228)
T ss_pred             CCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEE
Confidence            75443221222334466899999999999998888999999999999999999999999999999999999999999999


Q ss_pred             ECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 048556          322 IDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLS  401 (478)
Q Consensus       322 ~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LS  401 (478)
                      +||.|+.+++.+++|++||.|.|+|.||++||+|||.+|.|+++.+++.+|++.++.++||..+|+||||++||+|.+||
T Consensus       412 idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLS  491 (1228)
T KOG0055|consen  412 IDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLS  491 (1228)
T ss_pred             EcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556          402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK  478 (478)
Q Consensus       402 gGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~  478 (478)
                      |||||||||||||+++|+||||||||||||+++|+.+.++|.+..+++|+|+||||++++++||+|+||++|+|+|+
T Consensus       492 GGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~  568 (1228)
T KOG0055|consen  492 GGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQ  568 (1228)
T ss_pred             hHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999984

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=100.00  E-value=9.6e-88  Score=743.13  Aligned_cols=467  Identities=27%  Similarity=0.367  Sum_probs=432.1

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556            3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL   82 (478)
Q Consensus         3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (478)
                      +..+.+.++..++|..+|+|++++|+.+|+++ ++|++++|+. |++.+++++...+...+...+.++++++++++++|+
T Consensus       199 ~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~-~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  276 (686)
T TIGR03797       199 AVLRLETRMDASLQAAVWDRLLRLPVSFFRQY-STGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWK  276 (686)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCC-ChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567899999999999999999999999998 8999999997 799999999988888887877777888889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL  162 (478)
Q Consensus        83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  162 (478)
                      +++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+++.|+.+.++|++..++..+...+..+
T Consensus       277 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  356 (686)
T TIGR03797       277 LALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQR  356 (686)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988888888889999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556          163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP  242 (478)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~  242 (478)
                      .......+..++..+..++++++|++++.+|.+|+|.++++..++..+..|+..+...+..++++..+.+|+.++++.++
T Consensus       357 ~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~  436 (686)
T TIGR03797       357 IENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALP  436 (686)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            88888888888888889999999999999999999999999999999999999999999999999999999999998655


Q ss_pred             CcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556          243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI  322 (478)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~  322 (478)
                      +.+..   ...+....+.|+++||+|+|+++ ++++|+|+||+|++||++||+||||||||||+|+|+|+|+|++|+|.+
T Consensus       437 e~~~~---~~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~i  512 (686)
T TIGR03797       437 EVDEA---KTDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFY  512 (686)
T ss_pred             ccccC---cCCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence            43211   11112234579999999999753 368999999999999999999999999999999999999999999999


Q ss_pred             CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 048556          323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSG  402 (478)
Q Consensus       323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg  402 (478)
                      ||+|+++++.+++|++|+||||++++|+|||+|||++++| +++++++++++.++++++++.+|+|+||.+||+|.+|||
T Consensus       513 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSG  591 (686)
T TIGR03797       513 DGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSG  591 (686)
T ss_pred             CCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCH
Confidence            9999999999999999999999999999999999999998 899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556          403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK  478 (478)
Q Consensus       403 Gq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~  478 (478)
                      ||||||+||||++++|+++|||||||+||+++|+++.+.|++.  ++|+|+||||+++++.||+|+||++|+++|.
T Consensus       592 GQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~  665 (686)
T TIGR03797       592 GQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQ  665 (686)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEE
Confidence            9999999999999999999999999999999999999999886  5899999999999999999999999999863

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=100.00  E-value=1e-87  Score=743.69  Aligned_cols=471  Identities=38%  Similarity=0.593  Sum_probs=433.3

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556            3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL   82 (478)
Q Consensus         3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (478)
                      +....+.++..++|..+|++++++|..+|++. ++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.
T Consensus       224 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~-~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~  302 (711)
T TIGR00958       224 SFNYTMARINLRIREDLFRSLLRQDLGFFDEN-KTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPR  302 (711)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            34578889999999999999999999999998 89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL  162 (478)
Q Consensus        83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  162 (478)
                      +++++++.+|+.+++..++.++.++..++.++..++.++.+.|.++|+++||.|+.|+.+.++|.+..++..+...+...
T Consensus       303 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  382 (711)
T TIGR00958       303 LTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKAL  382 (711)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988999999999999999999999999999999999999999999999999999999998888777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556          163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP  242 (478)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~  242 (478)
                      ..........++..+..++++++|++++.+|.+|+|+++++..+...+..|+..+...+..++++..+.+|+.++++.++
T Consensus       383 ~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~  462 (711)
T TIGR00958       383 AYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKP  462 (711)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            66666666677777788888899999999999999999999999999999999999999999999999999999998765


Q ss_pred             CcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556          243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI  322 (478)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~  322 (478)
                      +.+...  ...+.+..+.|+++||+|+|++++++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++
T Consensus       463 ~~~~~~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i  540 (711)
T TIGR00958       463 NIPLTG--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLL  540 (711)
T ss_pred             CCCCCC--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEE
Confidence            432211  111222345799999999998654468999999999999999999999999999999999999999999999


Q ss_pred             CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 048556          323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSG  402 (478)
Q Consensus       323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg  402 (478)
                      ||+|+++++.+++|++|+||||+|++|++||||||+++.++.++++++++++.++++++++++|+|+||.+||+|.+|||
T Consensus       541 dg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSG  620 (711)
T TIGR00958       541 DGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSG  620 (711)
T ss_pred             CCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCH
Confidence            99999999999999999999999999999999999999998999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556          403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK  478 (478)
Q Consensus       403 Gq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~  478 (478)
                      ||||||+||||++++|+++|||||||+||+++|+.+.+ . ...+++|+|+||||+++++.||+|++|++|+|+|+
T Consensus       621 GQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~-~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~  694 (711)
T TIGR00958       621 GQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-S-RSRASRTVLLIAHRLSTVERADQILVLKKGSVVEM  694 (711)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-h-hccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence            99999999999999999999999999999999999999 3 33468999999999999999999999999999873

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=100.00  E-value=1.9e-87  Score=741.68  Aligned_cols=471  Identities=27%  Similarity=0.420  Sum_probs=436.1

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556            3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL   82 (478)
Q Consensus         3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (478)
                      +..+.+.++..++|..+|+|++++|+.+ +++ ++|++++|+ +|++.+++++...+...+..++.++++++++++++|+
T Consensus       210 ~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~~-~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  286 (694)
T TIGR03375       210 FLDVAGKKADLILSAKLFERVLGLRMEA-RPA-SVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGP  286 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCccc-CCC-ChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            4567889999999999999999999998 676 899999999 7999999999988888888877777778888999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL  162 (478)
Q Consensus        83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  162 (478)
                      ++++.++.+|+++++..++.++.++..++..+..++..+.+.|+++|+++||.++.|+.+.++|++..+++.+...+..+
T Consensus       287 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  366 (694)
T TIGR03375       287 LVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRF  366 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999989999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556          163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP  242 (478)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~  242 (478)
                      .......+..++..+..++++++|++++.+|.+|+|+++++..++..+..|+..+...+..++.+..+.+|+.++++.++
T Consensus       367 ~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~  446 (694)
T TIGR03375       367 LSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPV  446 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            88888888888888888999999999999999999999999999999999999999999999999999999999998765


Q ss_pred             CcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556          243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI  322 (478)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~  322 (478)
                      +.+... .....+...+.|+++||+|+|++. ++++|+|+||+|+|||++||+||||||||||+++|+|+|+|++|+|.+
T Consensus       447 e~~~~~-~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~i  524 (694)
T TIGR03375       447 ERPEGT-RFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLL  524 (694)
T ss_pred             CCCCCC-CCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence            432211 111112234579999999999753 357999999999999999999999999999999999999999999999


Q ss_pred             CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 048556          323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSG  402 (478)
Q Consensus       323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg  402 (478)
                      ||+|+.+++.+++|++|+||||++++|+|||+|||++++|++++++++++++.++++++++.+|+||||.+||+|.+|||
T Consensus       525 dg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSg  604 (694)
T TIGR03375       525 DGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSG  604 (694)
T ss_pred             CCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556          403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK  478 (478)
Q Consensus       403 Gq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~  478 (478)
                      ||||||+||||++++|+++|||||||+||+++|+.+.+.|++..+++|+|+||||+++++.||+|++|++|+++|+
T Consensus       605 GQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~  680 (694)
T TIGR03375       605 GQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVAD  680 (694)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEee
Confidence            9999999999999999999999999999999999999999998889999999999999999999999999999873

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=100.00  E-value=2.4e-87  Score=742.92  Aligned_cols=470  Identities=26%  Similarity=0.356  Sum_probs=434.8

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556            3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL   82 (478)
Q Consensus         3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (478)
                      +..+.+.++..++|.++|+|++++|+.+|+++ ++|++++|+++| +.+++++...+...+..++.+++.++++++++|+
T Consensus       217 ~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~-~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  294 (710)
T TIGR03796       217 YLRRLQIKLAVGMSARFLWHILRLPVRFFAQR-HAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPV  294 (710)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCC-cccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34668889999999999999999999999998 899999999987 6899999999998899999999888899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL  162 (478)
Q Consensus        83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  162 (478)
                      +++++++.+|+++++..++.++..+..++.++..++..+.+.|.++|+++||++++|+.+.++|.+...+..+...+..+
T Consensus       295 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  374 (710)
T TIGR03796       295 LTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGV  374 (710)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988888999999999999999999999999999999999999999999999999999999998888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556          163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP  242 (478)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~  242 (478)
                      .......+..++..+..++++++|++++.+|.+|+|.++++..++..+..|+..+...+..++++..+.+|+.++++.++
T Consensus       375 ~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~  454 (710)
T TIGR03796       375 LTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPV  454 (710)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            88888888888888889999999999999999999999999999999999999999999999999999999999998765


Q ss_pred             CcccCCC---C-CCcc-CCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCc
Q 048556          243 LIDAYDS---N-GVKL-DDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA  317 (478)
Q Consensus       243 ~~~~~~~---~-~~~~-~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~  317 (478)
                      +......   . .... +...+.|+++||+|+|++. ++++|+|+||+|++||++||+||||||||||+++|+|+|+|++
T Consensus       455 e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~  533 (710)
T TIGR03796       455 DPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWS  533 (710)
T ss_pred             ccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence            4322110   0 0111 2234679999999999853 3589999999999999999999999999999999999999999


Q ss_pred             cEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCC
Q 048556          318 GEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHG  397 (478)
Q Consensus       318 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g  397 (478)
                      |+|.+||+|+.+++.+++|++|+||||++++|+|||+|||+++.|++++++++++++.+++++++.++|+|+||.+||+|
T Consensus       534 G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G  613 (710)
T TIGR03796       534 GEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGG  613 (710)
T ss_pred             cEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCC
Confidence            99999999999999999999999999999999999999999999889999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          398 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       398 ~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      .+|||||||||+||||++++|+++|||||||+||+++|++|.+.|++  .++|+|+||||+++++.||+|++|++|++++
T Consensus       614 ~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~  691 (710)
T TIGR03796       614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQ  691 (710)
T ss_pred             CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEE
Confidence            99999999999999999999999999999999999999999999987  4799999999999999999999999999986

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=100.00  E-value=3.1e-87  Score=741.51  Aligned_cols=469  Identities=28%  Similarity=0.429  Sum_probs=432.6

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556            3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL   82 (478)
Q Consensus         3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (478)
                      +..+.+.++..++|.++|+|++++|+.+|+++ ++|++++|++ |++.+.+++.......+..++.+++.++++++++|+
T Consensus       219 ~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~-~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  296 (708)
T TIGR01193       219 LLNVLGQRLSIDIILSYIKHLFELPMSFFSTR-RTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNML  296 (708)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-chhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            45668889999999999999999999999998 8999999998 899999999888888888887878888888999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL  162 (478)
Q Consensus        83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  162 (478)
                      +++++++.+|+++++..++.++.++..++.++..++..+.+.|+++|+++||++|.|+.+.++|.+...++.+...+..+
T Consensus       297 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  376 (708)
T TIGR01193       297 LFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQK  376 (708)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999989999999999999999999999999999999999999999999999999999999998888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556          163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP  242 (478)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~  242 (478)
                      .......+..++..+..++++++|++++.+|.+|+|+++++..+...+..|+..+...+..++++..+.+|+.++++.++
T Consensus       377 ~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~  456 (708)
T TIGR01193       377 ADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDS  456 (708)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            77777777777778888889999999999999999999999999999999999999999999999999999999998665


Q ss_pred             CcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556          243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI  322 (478)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~  322 (478)
                      +.+... .....+...+.|+++||+|+|++  ++++|+|+||+|++||++||+||||||||||+++|+|+|+|++|+|++
T Consensus       457 e~~~~~-~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~i  533 (708)
T TIGR01193       457 EFINKK-KRTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL  533 (708)
T ss_pred             cccccc-cccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEE
Confidence            432211 10112233467999999999973  357999999999999999999999999999999999999999999999


Q ss_pred             CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcC-CCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 048556          323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG-KDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLS  401 (478)
Q Consensus       323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~-~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LS  401 (478)
                      ||+|+.+++.+++|++|+||||++++|+|||+|||.++ .|++++++++++++.++++++++.+|+||||.+||+|.+||
T Consensus       534 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LS  613 (708)
T TIGR01193       534 NGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSIS  613 (708)
T ss_pred             CCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCC
Confidence            99999999999999999999999999999999999999 57899999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       402 gGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      |||||||+||||++++|++||||||||+||+++|+.+.+.|++. +++|+|+||||+++++.||+|++|++|+++|
T Consensus       614 gGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~  688 (708)
T TIGR01193       614 GGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIE  688 (708)
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999885 6799999999999999999999999999986

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=100.00  E-value=1.4e-86  Score=721.74  Aligned_cols=471  Identities=32%  Similarity=0.535  Sum_probs=435.4

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556            3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL   82 (478)
Q Consensus         3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (478)
                      +..+.+.++..++|..+|+++++.|..+|++. ++|++++|+++|++.+++.+...+..++..++.++++++++++++|+
T Consensus        88 ~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (582)
T PRK11176         88 CISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQ  166 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567888999999999999999999999998 89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL  162 (478)
Q Consensus        83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  162 (478)
                      +++++++++|+.+++..++.+++++..++.++..++..+.+.|.++|++++|+++.++.+.++|++..+++.+...+..+
T Consensus       167 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (582)
T PRK11176        167 LSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVS  246 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999898888888889999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556          163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP  242 (478)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~  242 (478)
                      .......+..++..+..++++++|++.+.+|.+|+|+++++..++..+..|+..+...+..++++..+.+|+.++++.++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~  326 (582)
T PRK11176        247 ASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQ  326 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            88888888888888888888999999999999999999998888888889999999999999999999999999987654


Q ss_pred             CcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556          243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI  322 (478)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~  322 (478)
                      +.+...   ...+...+.|+++||+|+|+++ ++++|+|+||+|++||++||+||||||||||+++|+|+|+|++|+|++
T Consensus       327 ~~~~~~---~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i  402 (582)
T PRK11176        327 EKDEGK---RVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILL  402 (582)
T ss_pred             cCCCCC---cCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEE
Confidence            322111   1112223569999999999753 358999999999999999999999999999999999999999999999


Q ss_pred             CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCC-CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 048556          323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDG-ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLS  401 (478)
Q Consensus       323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~-~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LS  401 (478)
                      ||+|+++++.+++|++|+||||++++|++|++|||+++.++ .++++++++++.++++++++++|+|+||.+|++|.+||
T Consensus       403 ~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LS  482 (582)
T PRK11176        403 DGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLS  482 (582)
T ss_pred             CCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCC
Confidence            99999999999999999999999999999999999999764 79999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556          402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK  478 (478)
Q Consensus       402 gGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~  478 (478)
                      |||||||+||||++++|+++|||||||+||+++++++.+.|++..+++|+|+||||++.++.||+|++|++|+++|+
T Consensus       483 GGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~  559 (582)
T PRK11176        483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVER  559 (582)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEe
Confidence            99999999999999999999999999999999999999999998788999999999999999999999999999873

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=1.3e-86  Score=719.38  Aligned_cols=470  Identities=23%  Similarity=0.350  Sum_probs=427.2

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556            3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL   82 (478)
Q Consensus         3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (478)
                      +..+.+.++..++|.++|+|++++|+.+|++. ++|++++|+++|++.+++++...++.++..++.++++++++++++|.
T Consensus        83 ~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~-~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  161 (574)
T PRK11160         83 VSHDATFRVLTHLRVFTFSKLLPLSPAGLARY-RQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLT  161 (574)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccChHhhccC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567888999999999999999999999998 89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           83 LTLVMLSSIPAIVL-TAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEG  161 (478)
Q Consensus        83 l~li~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~  161 (478)
                      +++++++++|+.++ ++.++.++.++..++.++..+++++.+.|.++|++++|+|+.|+.+.++|++..+++.+...+..
T Consensus       162 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~  241 (574)
T PRK11160        162 LALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQA  241 (574)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998888876654 45677788888899999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 048556          162 LAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMI-GSMSLGQASPCISAFAAGQAAAYKLFEAIER  240 (478)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~-~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~  240 (478)
                      +..+....+..++..+..++++++|++++ +|.+++|.+++++.+... ...|+..+...+..++++.++++|+.++++.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~  320 (574)
T PRK11160        242 NLTGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQ  320 (574)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            88888888888888888888889999884 899999999987766544 4457888888899999999999999999987


Q ss_pred             CCCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEE
Q 048556          241 KPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV  320 (478)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i  320 (478)
                      +++.+....  .......+.|+++||+|+|+++ ++++|+|+||+|++||++||+||||||||||+++|+|+|+|++|+|
T Consensus       321 ~~~~~~~~~--~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I  397 (574)
T PRK11160        321 KPEVTFPTT--STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEI  397 (574)
T ss_pred             CCCCCCCcc--cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence            654322111  1111233579999999999753 3579999999999999999999999999999999999999999999


Q ss_pred             EECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCC
Q 048556          321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQL  400 (478)
Q Consensus       321 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~L  400 (478)
                      ++||+++.+++.+++|++++||||+|++|++|++||++++.|++++++++++++.+++++++++ |+||||.+||+|.+|
T Consensus       398 ~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~L  476 (574)
T PRK11160        398 LLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQL  476 (574)
T ss_pred             EECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999 999999999999999


Q ss_pred             ChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556          401 SGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK  478 (478)
Q Consensus       401 SgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~  478 (478)
                      |||||||++||||++++|+++|||||||+||+++++.+.+.|++..+++|+|+||||+++++.||+|++|++|+++|.
T Consensus       477 SgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~  554 (574)
T PRK11160        477 SGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQ  554 (574)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEe
Confidence            999999999999999999999999999999999999999999998888999999999999999999999999999873

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=100.00  E-value=7.4e-87  Score=715.99  Aligned_cols=452  Identities=26%  Similarity=0.357  Sum_probs=409.0

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556            3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL   82 (478)
Q Consensus         3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (478)
                      +..+.+.++..++|.++|+|++++|+.+|++. ++|++++|+++|++.+++++...+..++..++.++++++++++++|.
T Consensus        76 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~-~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  154 (529)
T TIGR02868        76 VGHDAALRSLGRLRVRVYDRLARLALAGRRRF-QTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVP  154 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCccccccC-ChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            34567788899999999999999999999998 89999999999999999999999999999998888888899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           83 LTLVMLSSIPAIVLTAGVMS-TVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEG  161 (478)
Q Consensus        83 l~li~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~  161 (478)
                      +++++++.+|++.++..++. +..++..++.++..+++.+.+.|.++|+++||+|+.|+.+.++|++..+++.+...+..
T Consensus       155 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (529)
T TIGR02868       155 AALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAA  234 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998888777666554444 44466677778888999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 048556          162 LAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERK  241 (478)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~  241 (478)
                      +..+.......++..+..++++++|++++.+|.+|+|+++++..+...+..|+..+...+..++++.++.+|+.++++.+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~  314 (529)
T TIGR02868       235 RATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAK  314 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            88888888888888888888899999999999999999999999988888999999999999999999999999999866


Q ss_pred             CCcccCCCC-CCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEE
Q 048556          242 PLIDAYDSN-GVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV  320 (478)
Q Consensus       242 ~~~~~~~~~-~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i  320 (478)
                      ++....... ........+.|+++||+|+|+++  +++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I  392 (529)
T TIGR02868       315 GPRPEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEV  392 (529)
T ss_pred             CCcCCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence            542211110 00111123569999999999753  469999999999999999999999999999999999999999999


Q ss_pred             EECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCC
Q 048556          321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQL  400 (478)
Q Consensus       321 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~L  400 (478)
                      .+||+|+.++ .+++|++|+||||+|++|+|||+|||++|.|++++++++++++.+++++++.++|+||||.+||+|.+|
T Consensus       393 ~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~L  471 (529)
T TIGR02868       393 TLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARL  471 (529)
T ss_pred             EECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcC
Confidence            9999999999 999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCc
Q 048556          401 SGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRL  458 (478)
Q Consensus       401 SgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~  458 (478)
                      ||||||||+||||++++|+++|||||||+||+++|+.|.+.+++..+++|+|+||||+
T Consensus       472 SGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl  529 (529)
T TIGR02868       472 SGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL  529 (529)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence            9999999999999999999999999999999999999999999988899999999995

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.3e-86  Score=681.65  Aligned_cols=470  Identities=27%  Similarity=0.389  Sum_probs=435.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 048556            5 IVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLLT   84 (478)
Q Consensus         5 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   84 (478)
                      .+.+.++...+|..+++|+.++++.+-.+. ++|+..+.+...++.++.|+..++|.+..+.+.++..++.+++.+|.-+
T Consensus        65 ~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~-~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aa  143 (559)
T COG4988          65 YRAAAKVRASLRQLVLDKLAKLGPAFIAQK-PAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAA  143 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCChhhhcCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            457788899999999999999999999887 8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           85 LVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAA  164 (478)
Q Consensus        85 li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  164 (478)
                      +++++++|++.+.+..++.+.++..+++++....+++.+.|.++|+.|+|.|+..+...++..+..+++++.+|+.-+..
T Consensus       144 lIllit~PlIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriA  223 (559)
T COG4988         144 LILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIA  223 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Q 048556          165 GLGFGAFTFVAFSSYSLAIWFGGKMILE-KGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPL  243 (478)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~l~~g~~lv~~-g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~  243 (478)
                      -.+..+..++..+...++..+.+..... |.++....+.++.++.-.+.|+..++..+..-+.+.++.+.++.+++.+++
T Consensus       224 flSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~  303 (559)
T COG4988         224 FLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVA  303 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCC
Confidence            8888899999988888777766666677 899999888888888888999999999999999999999999999987654


Q ss_pred             cccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEEC
Q 048556          244 IDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID  323 (478)
Q Consensus       244 ~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~  323 (478)
                      ..............+.+++.+|++|.|++.  +++++|+||++++|+++||||+||||||||+++|+|+.+|++|+|.+|
T Consensus       304 ~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vn  381 (559)
T COG4988         304 TPGSGEKAEVANEPPIEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVN  381 (559)
T ss_pred             CCCCccccccccCCCceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEEC
Confidence            332211001111223345666999999853  489999999999999999999999999999999999999999999999


Q ss_pred             CeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChH
Q 048556          324 GVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGG  403 (478)
Q Consensus       324 g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgG  403 (478)
                      |++..+++.++||++++||||+|++|+||+||||++++|++++++++++++.+++.++++. |+|+||.+||+|.+||||
T Consensus       382 g~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgG  460 (559)
T COG4988         382 GIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGG  460 (559)
T ss_pred             CccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHH
Confidence            9999999999999999999999999999999999999999999999999999999999999 999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556          404 QKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK  478 (478)
Q Consensus       404 q~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~  478 (478)
                      |+||+++||||++++++++||||||+||.+||+.|.+.|.++.+++|+|+||||++.+++||+|+|||+|+++|+
T Consensus       461 Q~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~  535 (559)
T COG4988         461 QAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQ  535 (559)
T ss_pred             HHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceecc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999874

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=4e-86  Score=770.45  Aligned_cols=471  Identities=31%  Similarity=0.508  Sum_probs=414.1

Q ss_pred             eehHHHHHHHHHHHHHHHHHHHHcCChhhhhc--cCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556            2 ACWIVTGERQAARIRGLYLKTLLRQDIGFFDK--ETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSK   79 (478)
Q Consensus         2 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~--~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (478)
                      |+..+.++++..++|.++|++++++|+.||++  + ++|++++|+++|++.++..+...+..++..++.+++++++++++
T Consensus       888 ~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~-~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~  966 (1466)
T PTZ00265        888 YYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKH-APGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYF  966 (1466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35678999999999999999999999999985  5 79999999999999999999999999999999999998899999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHHHHHHHcHHHHHHHhchHHH
Q 048556           80 GWLLTLVMLSSIPAIVLTAGVMSTVITKLA-SR-----------------GQTAYSIAAAVAEQTIGSIRTVASFTGEKQ  141 (478)
Q Consensus        80 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~  141 (478)
                      +|.+++++++++   +++...+.++.+... ++                 ..+..++.+..++|+++|+++||+|+.|+.
T Consensus       967 ~~~l~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~ 1043 (1466)
T PTZ00265        967 CPIVAAVLTGTY---FIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDY 1043 (1466)
T ss_pred             HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHH
Confidence            999887765433   333334444332211 11                 123356678999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556          142 AVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCI  221 (478)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~  221 (478)
                      +.++|.+..++..+...+.....++...+..++..+..++++|+|++++..|.+|+|++++++.++.....++..+...+
T Consensus      1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~ 1123 (1466)
T PTZ00265       1044 FCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLK 1123 (1466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988888888888888888888888889999999999999999999999988766655555777888889


Q ss_pred             HHHHHHHHHHHHHHHHHccCCCcccCCCCCCc---cCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCC
Q 048556          222 SAFAAGQAAAYKLFEAIERKPLIDAYDSNGVK---LDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQS  298 (478)
Q Consensus       222 ~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~---~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~s  298 (478)
                      ..+++++++++|++++++.+++.+....+...   ++...+.|+|+||+|+|+++++.++|+|+||+|++|+++||||||
T Consensus      1124 ~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~S 1203 (1466)
T PTZ00265       1124 GDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGET 1203 (1466)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCC
Confidence            99999999999999999876533211111111   122346799999999998654568999999999999999999999


Q ss_pred             CCChHHHHHHHhccCCC------------------------------------------------------CccEEEECC
Q 048556          299 GSGKSTVISLIERFYDP------------------------------------------------------QAGEVLIDG  324 (478)
Q Consensus       299 GsGKSTL~~ll~g~~~~------------------------------------------------------~~G~i~~~g  324 (478)
                      |||||||+++|+|+|+|                                                      ++|+|++||
T Consensus      1204 GsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG 1283 (1466)
T PTZ00265       1204 GSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDG 1283 (1466)
T ss_pred             CCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECC
Confidence            99999999999999998                                                      699999999


Q ss_pred             eecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHH
Q 048556          325 VNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQ  404 (478)
Q Consensus       325 ~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq  404 (478)
                      +|+++++.+++|++|+||||+|+||+|||+|||++|.|+++++++++|++.++++++|..||+||||.+||+|.+|||||
T Consensus      1284 ~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQ 1363 (1466)
T PTZ00265       1284 VDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQ 1363 (1466)
T ss_pred             EEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhhcCEEEEEeC----CEEe
Q 048556          405 KQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRNADLIAVIHQ----GKLV  476 (478)
Q Consensus       405 ~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~vl~~----G~i~  476 (478)
                      ||||||||||+++|+|||||||||+||+++|+.|.+.|.+..  +++|+|+||||+++++.||+|+||++    |+++
T Consensus      1364 kQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv 1441 (1466)
T PTZ00265       1364 KQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFV 1441 (1466)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEE
Confidence            999999999999999999999999999999999999999884  68999999999999999999999999    8854

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=100.00  E-value=1.1e-84  Score=719.39  Aligned_cols=470  Identities=29%  Similarity=0.465  Sum_probs=435.4

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556            3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL   82 (478)
Q Consensus         3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (478)
                      +..+.+.++..++|.++|+|++++|+.+|+++ ++|++++|+ +|++.+++++...+...+..++.+++.++++++++|.
T Consensus       202 ~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~-~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  279 (694)
T TIGR01846       202 LFAHLTSRIDVELGARLYRHLLGLPLGYFESR-RVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPT  279 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCC-CHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678899999999999999999999999998 899999999 6999999999888888887777777777888999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL  162 (478)
Q Consensus        83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  162 (478)
                      +++++++++|+++++..++.++.++..++..+..++.++.+.|.++|+++||++|.|+.+.++|++..+++.+...+..+
T Consensus       280 l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  359 (694)
T TIGR01846       280 LTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTN  359 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988888888999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556          163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP  242 (478)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~  242 (478)
                      .......+..++..+..++++++|++++.+|.+|+|+++++..+...+..|+..+.+.+..++++..+.+|+.++++.++
T Consensus       360 ~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~  439 (694)
T TIGR01846       360 LGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPT  439 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            88888888888888889999999999999999999999999999999999999999999999999999999999998765


Q ss_pred             CcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556          243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI  322 (478)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~  322 (478)
                      +....  +....+...+.|+++||+|+|++. ++++|+|+||+|++||++||+||||||||||+++|+|+|+|++|+|++
T Consensus       440 e~~~~--~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~i  516 (694)
T TIGR01846       440 EPRSA--GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLV  516 (694)
T ss_pred             CccCC--CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence            43211  111122334679999999999743 357999999999999999999999999999999999999999999999


Q ss_pred             CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 048556          323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSG  402 (478)
Q Consensus       323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg  402 (478)
                      ||+++.+++.+++|++++||||++++|++|++|||+++.|++++++++++++.++++++++.+|+|+||.+|++|.+|||
T Consensus       517 dg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSg  596 (694)
T TIGR01846       517 DGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSG  596 (694)
T ss_pred             CCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       403 Gq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      |||||++||||++++|+++|||||||+||+++++.+.+.|++..+++|+|+||||+++++.||+|++|++|++++
T Consensus       597 Gq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~  671 (694)
T TIGR01846       597 GQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAE  671 (694)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEE
Confidence            999999999999999999999999999999999999999999878899999999999999999999999999986

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=100.00  E-value=1.3e-84  Score=704.83  Aligned_cols=470  Identities=34%  Similarity=0.554  Sum_probs=439.0

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556            3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL   82 (478)
Q Consensus         3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (478)
                      +..+.+.++...+|..+|+++++.|.+++++. ++|++++|+++|++.+++++...+..++..++.++++++++++++|+
T Consensus        77 ~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~-~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~  155 (571)
T TIGR02203        77 LLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQ-PTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQ  155 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            45678889999999999999999999999998 89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL  162 (478)
Q Consensus        83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  162 (478)
                      +++++++++|+.+++..++.++.++..++..+..++..+.+.|.++|++++|.++.++.+.++|++..++..+...+..+
T Consensus       156 l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (571)
T TIGR02203       156 LTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTS  235 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999989999999999999999999999999999999999999999999999999999999998888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556          163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP  242 (478)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~  242 (478)
                      .......+..++..+..++++++|++++.+|.+|+|.++++..++..+..|+..+...+..+++++.+.+|+.++++.++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~  315 (571)
T TIGR02203       236 AGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPP  315 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            88888888888888888899999999999999999999999999999999999999999999999999999999998655


Q ss_pred             CcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556          243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI  322 (478)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~  322 (478)
                      +.+...   .......+.|+++||+|+|+++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++
T Consensus       316 ~~~~~~---~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i  391 (571)
T TIGR02203       316 EKDTGT---RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILL  391 (571)
T ss_pred             CCCCCC---CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEE
Confidence            432111   1111233579999999999754 357999999999999999999999999999999999999999999999


Q ss_pred             CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCC-CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 048556          323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKD-GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLS  401 (478)
Q Consensus       323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~-~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LS  401 (478)
                      ||+++++++.+++|++++|+||+|++|+||++|||+++++ +.++++++++++.+++++++.++|+|+||.+|++|.+||
T Consensus       392 ~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LS  471 (571)
T TIGR02203       392 DGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLS  471 (571)
T ss_pred             CCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCC
Confidence            9999999999999999999999999999999999999986 789999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       402 gGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      |||||||+||||++++|++++||||||+||+++++.+.+.|++..+++|+|+||||++.++.||+|++|++|++++
T Consensus       472 gGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~  547 (571)
T TIGR02203       472 GGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVE  547 (571)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEe
Confidence            9999999999999999999999999999999999999999999888899999999999999999999999999976

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=100.00  E-value=2e-84  Score=697.08  Aligned_cols=463  Identities=28%  Similarity=0.370  Sum_probs=421.0

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556            3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL   82 (478)
Q Consensus         3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (478)
                      +..+.+.++..++|..+|++++++|..+|++. ++|++++|+++|++.+++++...+..++..++.++++++++++++|.
T Consensus        67 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  145 (529)
T TIGR02857        67 AAARAAAAVKSQLRERLLAAVAALGPGWLQGR-PSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWI  145 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCchhhccC-ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            45567889999999999999999999999998 89999999999999999999998888888888888888889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL  162 (478)
Q Consensus        83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  162 (478)
                      +++++++.+|+.+++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..+++.+...+..+
T Consensus       146 l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  225 (529)
T TIGR02857       146 SGLILLLTAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLR  225 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988888887778888888888999999999999999999999999999999999999999999999888888777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556          163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP  242 (478)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~  242 (478)
                      ..........++..+..+++++++++.+.+|.+|+|.++++..++..+..|+..+...+..++++..+.+|+.++++.++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~  305 (529)
T TIGR02857       226 IAFLSSAVLELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPR  305 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            77777777777777776666667778888999999999999888888889999999999999999999999999997543


Q ss_pred             CcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556          243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI  322 (478)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~  322 (478)
                      +.....   .......+.|+++||+|+|+++ ++++|+|+||+|+|||+++|+||||||||||+++|+|+|+|++|+|.+
T Consensus       306 ~~~~~~---~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~  381 (529)
T TIGR02857       306 PLAGKA---PVTAAPAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAV  381 (529)
T ss_pred             ccCCCc---CCCCCCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence            211111   1111112479999999999854 357999999999999999999999999999999999999999999999


Q ss_pred             CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 048556          323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSG  402 (478)
Q Consensus       323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg  402 (478)
                      ||.|+.+++.+++|++++||||+|++|++|++||++++.|+.++++++++++.++++++++++|+||||.+||+|.+|||
T Consensus       382 ~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSg  461 (529)
T TIGR02857       382 NGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSG  461 (529)
T ss_pred             CCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCH
Confidence            99999999999999999999999999999999999999988899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEE
Q 048556          403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVI  470 (478)
Q Consensus       403 Gq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl  470 (478)
                      |||||++||||++++|+++|||||||+||+++++.+.+.+++..+++|+|+||||+++++.||+|++|
T Consensus       462 Gq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l  529 (529)
T TIGR02857       462 GQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL  529 (529)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence            99999999999999999999999999999999999999999987889999999999999999999985

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=4.7e-84  Score=703.00  Aligned_cols=465  Identities=26%  Similarity=0.378  Sum_probs=414.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 048556            4 WIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLL   83 (478)
Q Consensus         4 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   83 (478)
                      ....+.++..++|.++|+++++.|+.+|++. ++|++++|+++|++.+++.+...+..++..++.++++++++++++|++
T Consensus        89 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  167 (592)
T PRK10790         89 FNRAAVGVVQQLRTDVMDAALRQPLSAFDTQ-PVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRM  167 (592)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456777889999999999999999999998 899999999999999999999999999999988888888899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           84 TLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLA  163 (478)
Q Consensus        84 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  163 (478)
                      ++++++++|+.++...++.++.++..++.++..++..+.+.|.++|++++|+|+.++.+.++|.+..++..+...+..+.
T Consensus       168 ~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (592)
T PRK10790        168 ALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRL  247 (592)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99988888888777777778888888888888899999999999999999999999999999999988888877766665


Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556          164 AGLG-FGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP  242 (478)
Q Consensus       164 ~~~~-~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~  242 (478)
                      .... .....++..+..+++++++++ +..|.+++|.++++..+...+..|+..+...+..+.++..+++|+.++++.++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~  326 (592)
T PRK10790        248 DGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPR  326 (592)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            5443 233344444433333344444 57899999999999999999999999999999999999999999999987654


Q ss_pred             CcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556          243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI  322 (478)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~  322 (478)
                      +.....    ..+...+.|+++||+|+|++  ++++|+|+||+|++||++||+|+||||||||+++|+|+|+|++|+|.+
T Consensus       327 ~~~~~~----~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i  400 (592)
T PRK10790        327 QQYGND----DRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRL  400 (592)
T ss_pred             ccCCCC----ccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEE
Confidence            321111    11122357999999999974  357999999999999999999999999999999999999999999999


Q ss_pred             CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 048556          323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSG  402 (478)
Q Consensus       323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg  402 (478)
                      ||.|+++++.+++|++|+||||+|++|+||++|||++++ ++++++++++++.++++++++.+|+||||.+||+|.+|||
T Consensus       401 dg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSG  479 (592)
T PRK10790        401 DGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSV  479 (592)
T ss_pred             CCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCH
Confidence            999999999999999999999999999999999999998 5899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       403 Gq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      ||||||+|||||+++|+++|||||||+||+++++.|.+.|++..+++|+|+||||++.++.||+|++|++|++++
T Consensus       480 GqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~  554 (592)
T PRK10790        480 GQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVE  554 (592)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999999999999999999999878899999999999999999999999999986

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=100.00  E-value=1.1e-83  Score=699.43  Aligned_cols=468  Identities=31%  Similarity=0.436  Sum_probs=427.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 048556            6 VTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLLTL   85 (478)
Q Consensus         6 ~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l   85 (478)
                      +...++...+|.++|+|++++|+.+|++. ++|++++|+++|++.+.+.+...+..++..++.+++.++++++++|++++
T Consensus        82 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l  160 (588)
T PRK13657         82 RLAHRRRLAVLTEYFERIIQLPLAWHSQR-GSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSL  160 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHCcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455556666799999999999999998 89999999999999999988888888888888888888888999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           86 VMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAG  165 (478)
Q Consensus        86 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (478)
                      ++++++|+.+++..++.++.++..++.++..++..+.+.|.++|+++||.|+.++.+.+++.+..++..+...+..+...
T Consensus       161 ~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (588)
T PRK13657        161 VLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWA  240 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998888888888999999999999999999999999999999999999999999999999999998888888777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcc
Q 048556          166 LGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPLID  245 (478)
Q Consensus       166 ~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~  245 (478)
                      .......++..+..++++++|++++.+|.+|+|+++++..++..+..|+..+...+..+..+..+.+|+.++++.+++.+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~  320 (588)
T PRK13657        241 LASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVR  320 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC
Confidence            77777778888888889999999999999999999999999999999999999999999999999999999987654322


Q ss_pred             cCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCe
Q 048556          246 AYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGV  325 (478)
Q Consensus       246 ~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~  325 (478)
                      ... +........+.|+++||+|+|+++  +++|+|+||+++|||+++|+||||||||||+++|+|+|+|++|+|.+||.
T Consensus       321 ~~~-~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~  397 (588)
T PRK13657        321 DPP-GAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGT  397 (588)
T ss_pred             CCC-CCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCE
Confidence            111 111111223469999999999742  47999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556          326 NLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK  405 (478)
Q Consensus       326 ~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~  405 (478)
                      ++.+++.+++|++|+||||+|++|+||++|||++++|+.++++++++++.+++++++.++|+|+||.+|++|.+||||||
T Consensus       398 ~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~  477 (588)
T PRK13657        398 DIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGER  477 (588)
T ss_pred             EhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHH
Confidence            99999999999999999999999999999999999988999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      |||+||||++++|+++|||||||+||+++++.+.+.|++..+++|+|+||||++.++.||+|++|++|++++
T Consensus       478 QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~  549 (588)
T PRK13657        478 QRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVE  549 (588)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999999999999999998877899999999999999999999999999986

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=1.3e-83  Score=695.50  Aligned_cols=469  Identities=26%  Similarity=0.395  Sum_probs=426.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHH
Q 048556            4 WIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIA-LSKGWL   82 (478)
Q Consensus         4 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   82 (478)
                      ....+.++..++|.++|+|++++|+.+|++. ++|++++|+++|++.++..+...+..++..++.++++++++ ++++|.
T Consensus        60 ~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (569)
T PRK10789         60 LFGASYQLAVELREDFYRQLSRQHPEFYLRH-RTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQ  138 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHHHcCC-CHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            3456788999999999999999999999998 89999999999999999888777777777766655555444 579999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL  162 (478)
Q Consensus        83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  162 (478)
                      +++++++++|+++++..++.++.++..++.++..+++.+.+.|.++|++++|+|+.++.+.++|.+..++..+..++..+
T Consensus       139 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  218 (569)
T PRK10789        139 LTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVAR  218 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999888888889999999999999999999999999999999999999999999999999999888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556          163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP  242 (478)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~  242 (478)
                      ..+........+..+..++++++|++++.+|.+|+|+++++..+...+..|+..+...+..+.++.++.+|+.++++.++
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~  298 (569)
T PRK10789        219 IDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAP  298 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            77777777777777778888899999999999999999999999999999999999999999999999999999998654


Q ss_pred             CcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556          243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI  322 (478)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~  322 (478)
                      +.+...   ...+...+.|+++|++|+|++. ++++|+|+||++++||+++|+||||||||||+++|+|+|+|++|+|.+
T Consensus       299 ~~~~~~---~~~~~~~~~I~~~~v~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~  374 (569)
T PRK10789        299 VVKDGS---EPVPEGRGELDVNIRQFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRF  374 (569)
T ss_pred             cccCCC---CCCCCCCCcEEEEEEEEECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEE
Confidence            322111   1112223579999999999753 357999999999999999999999999999999999999999999999


Q ss_pred             CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 048556          323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSG  402 (478)
Q Consensus       323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg  402 (478)
                      ||+++.+++.+++|++++|+||+|++|++|++|||+++.|+.++++++++++.+++++++.++|+|++|.+|++|.+|||
T Consensus       375 ~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSg  454 (569)
T PRK10789        375 HDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSG  454 (569)
T ss_pred             CCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCH
Confidence            99999999999999999999999999999999999999888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       403 Gq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      |||||++||||++++|+++|||||||+||+++++.+.+.|++..+++|+|+||||++.++.||+|++|++|++++
T Consensus       455 Gq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~  529 (569)
T PRK10789        455 GQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQ  529 (569)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEE
Confidence            999999999999999999999999999999999999999998878899999999999999999999999999986

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.3e-84  Score=655.33  Aligned_cols=466  Identities=22%  Similarity=0.337  Sum_probs=411.4

Q ss_pred             HHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 048556            7 TGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLLTLV   86 (478)
Q Consensus         7 ~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li   86 (478)
                      ..-++..++|.++|+++...++.-..+. ++||+++|+..|++.+++.|.+.+.+++..++...++.+.+-+.+|+.++.
T Consensus        85 AtfrvL~~lRv~~f~kl~p~sp~~~~r~-r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~All  163 (573)
T COG4987          85 ATFRVLSALRVRLFEKLEPLSPALLLRY-RSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALL  163 (573)
T ss_pred             HHHHHHHHHHHHHHHhhccCChHHHHhc-ChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            4567888999999999999999999998 999999999999999999999999999999888888877777889988876


Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           87 MLSS-IPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAG  165 (478)
Q Consensus        87 ~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (478)
                      +.+. +...++++..+.++-++..+.....++.+.+.+.|.+.|..+++.||.++.+.+.+.+....+.+.+.+..++..
T Consensus       164 l~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~  243 (573)
T COG4987         164 LGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTG  243 (573)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5544 344556777888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHccCCC
Q 048556          166 LGFGAFTFVAFSSYS-LAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQAS-PCISAFAAGQAAAYKLFEAIERKPL  243 (478)
Q Consensus       166 ~~~~~~~~~~~~~~~-~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~-~~~~~~~~~~~a~~ri~~~l~~~~~  243 (478)
                      +......++..+..+ .++|.+ ..+-.|..+.-....+++..+..+.++..+. ..+....+...|+.|+.++.+++++
T Consensus       244 ~~~a~~~l~~g~~v~~~l~w~a-~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e  322 (573)
T COG4987         244 LSDAILLLIAGLLVIGLLLWMA-AQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPE  322 (573)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcc
Confidence            998888888877776 445544 4445566664333333333344455565665 6778899999999999999988776


Q ss_pred             cccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEEC
Q 048556          244 IDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID  323 (478)
Q Consensus       244 ~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~  323 (478)
                      ...+. . ..+... ..++++||||+|+++ +.++|+|+||++++||++||+|+||||||||++++.|.|+|++|+|.+|
T Consensus       323 ~~~~~-~-~~~~~~-~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~  398 (573)
T COG4987         323 VTFPD-E-QTATTG-QALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLN  398 (573)
T ss_pred             cCCCc-c-ccCCcc-ceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeEC
Confidence            44321 1 111111 269999999999975 4689999999999999999999999999999999999999999999999


Q ss_pred             CeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChH
Q 048556          324 GVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGG  403 (478)
Q Consensus       324 g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgG  403 (478)
                      |.++..++.+++|+.+++++|.+++|++|+|||+.+++|++|||+++++++++|+++++++.|+||+|++||.|..||||
T Consensus       399 g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGG  478 (573)
T COG4987         399 GVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGG  478 (573)
T ss_pred             CcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556          404 QKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK  478 (478)
Q Consensus       404 q~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~  478 (478)
                      |+||++|||+|++|+|++||||||.+||+.||+++++.+.+..++||+|+||||+..++.||||+|||+|+++|+
T Consensus       479 E~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~  553 (573)
T COG4987         479 ERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEE  553 (573)
T ss_pred             HHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeec
Confidence            999999999999999999999999999999999999999998899999999999999999999999999999874

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=100.00  E-value=3.3e-83  Score=694.55  Aligned_cols=474  Identities=38%  Similarity=0.615  Sum_probs=431.5

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556            3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL   82 (478)
Q Consensus         3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (478)
                      +..+.+.++...+|..+|++++++|..+|++. ++|++++|+++|++.+++++...+..++..++.++++++++++++|+
T Consensus        81 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (576)
T TIGR02204        81 LVTWLGERVVADIRRAVFAHLISLSPSFFDKN-RSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPK  159 (576)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHHccC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            34567889999999999999999999999998 89999999999999999999998988888888888888889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL  162 (478)
Q Consensus        83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  162 (478)
                      +++++++.+|+.+++..++.++.++..++.++..++..+.+.|.++|+++||.++.++.+.++|++..++..+...+..+
T Consensus       160 l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (576)
T TIGR02204       160 LTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIR  239 (576)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988888888888889999999999999999999999999999999999999999999999999988888777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556          163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP  242 (478)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~  242 (478)
                      ..........++..+..++++++|++++.+|.+|+|+++++..++..+..|+..+...+..+..+..+.+|+.++++.++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~  319 (576)
T TIGR02204       240 TRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEP  319 (576)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            76666666666666777788889999999999999999999999999999999999999999999999999999997654


Q ss_pred             CcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556          243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI  322 (478)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~  322 (478)
                      +.+..........+..+.|+++||+|+|++++++++|+|+||+|+|||+++|+||||||||||+++|+|+|+|++|+|++
T Consensus       320 ~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i  399 (576)
T TIGR02204       320 DIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILL  399 (576)
T ss_pred             cCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEE
Confidence            32211101111111234699999999998533357999999999999999999999999999999999999999999999


Q ss_pred             CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 048556          323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSG  402 (478)
Q Consensus       323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg  402 (478)
                      ||.++++++.+++|++++|+||+|++|+||++|||+++.|+.++++++++++.+++.++++.+|+|+||.+|++|.+|||
T Consensus       400 ~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSg  479 (576)
T TIGR02204       400 DGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSG  479 (576)
T ss_pred             CCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCH
Confidence            99999999999999999999999999999999999999988899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       403 Gq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      |||||++||||++++|+++|||||||+||+.+++.+.+.+++..+++|+|+||||++.++.||+|++|++|++++
T Consensus       480 Gq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~  554 (576)
T TIGR02204       480 GQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVA  554 (576)
T ss_pred             HHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEe
Confidence            999999999999999999999999999999999999999999878899999999999999999999999999986

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=100.00  E-value=1.6e-82  Score=688.64  Aligned_cols=468  Identities=28%  Similarity=0.400  Sum_probs=425.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 048556            6 VTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLLTL   85 (478)
Q Consensus         6 ~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l   85 (478)
                      +.+.++..++|.++|+|++++|+.+|+++ ++|++++|+++|++.+++++...+...+..++.+++++++++.++|.+++
T Consensus        82 ~~~~~~~~~lr~~~~~~l~~l~~~~~~~~-~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l  160 (585)
T TIGR01192        82 RLAHGRRATLLTEAFGRIISMPLSWHQQR-GTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSI  160 (585)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555666799999999999999998 89999999999999999999988888888888888888888999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           86 VMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAG  165 (478)
Q Consensus        86 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (478)
                      ++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.++.+.+++.+..+++.+...+..+..+
T Consensus       161 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (585)
T TIGR01192       161 VLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWA  240 (585)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988888999999999999999999999999999999999999999999999999999998888888777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcc
Q 048556          166 LGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPLID  245 (478)
Q Consensus       166 ~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~  245 (478)
                      ....+..++..+..++++++|++++.+|.+|+|+++++..++..+..|+..+...+..+..+..+.+|+.++++.+++..
T Consensus       241 ~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~  320 (585)
T TIGR01192       241 LASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQRE  320 (585)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence            77777777778888888999999999999999999999989888889999999999999999999999999987654322


Q ss_pred             cCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCe
Q 048556          246 AYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGV  325 (478)
Q Consensus       246 ~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~  325 (478)
                      ... +....+...+.++++||+|+|+++  +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.
T Consensus       321 ~~~-~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~  397 (585)
T TIGR01192       321 EPA-DAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGI  397 (585)
T ss_pred             CCc-cCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCE
Confidence            111 111111223569999999999742  46899999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556          326 NLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK  405 (478)
Q Consensus       326 ~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~  405 (478)
                      ++.+++.+++|++++||||++++|++|++||+.++.|++++++++++++.+++++++.++|+|++|.+|++|.+||||||
T Consensus       398 ~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~  477 (585)
T TIGR01192       398 DINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGER  477 (585)
T ss_pred             EhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHH
Confidence            99999999999999999999999999999999999888899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      ||++|||||+++|+++|||||||+||+++++.+.+.|++..+++|+|+||||++.++.||+|++|++|++++
T Consensus       478 qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~  549 (585)
T TIGR01192       478 QRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIE  549 (585)
T ss_pred             HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEE
Confidence            999999999999999999999999999999999999998878899999999999999999999999999986

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=3e-81  Score=736.05  Aligned_cols=470  Identities=22%  Similarity=0.305  Sum_probs=409.6

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556            3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL   82 (478)
Q Consensus         3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (478)
                      +....+.+...++|.++|+++++.|+.||++. ++|++++|+++|++.+++.+...+..++..++.+++.++++++.+|+
T Consensus      1028 ~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~-~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~ 1106 (1522)
T TIGR00957      1028 AVSIGGIQASRVLHQDLLHNKLRSPMSFFERT-PSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPI 1106 (1522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCChhHhccC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566889999999999999999999999997 89999999999999999999999999999999998888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL  162 (478)
Q Consensus        83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  162 (478)
                      +++++++++++++++.+++.+..++..+......+.+.+.+.|++.|+++||+|++++.+.+++.+..+...+..+....
T Consensus      1107 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~ 1186 (1522)
T TIGR00957      1107 AAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIV 1186 (1522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777666666666777777777777777888889999999999999999999999999999988888777766555444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 048556          163 AAGLGFGAFTFVAFSSYSLAIWFGGKMIL-EKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERK  241 (478)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~-~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~  241 (478)
                      ...+......++..   +++++++++.+. .|.++.|.+.+++.++..+..|+..+...+..+.++..|++|+.++++.+
T Consensus      1187 ~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~ 1263 (1522)
T TIGR00957      1187 ANRWLAVRLECVGN---CIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETE 1263 (1522)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            44444444333322   233444555554 57899999999999999999999999999999999999999999999766


Q ss_pred             CCcccCCCCCCcc--CCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccE
Q 048556          242 PLIDAYDSNGVKL--DDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE  319 (478)
Q Consensus       242 ~~~~~~~~~~~~~--~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~  319 (478)
                      ++.+...++..++  .+..+.|+|+||+|+|+++ .+++|+|+||+|+|||++|||||||||||||+++|.|+|+|++|+
T Consensus      1264 ~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~ 1342 (1522)
T TIGR00957      1264 KEAPWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGE 1342 (1522)
T ss_pred             CCccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCe
Confidence            5432111111111  1234789999999999753 247999999999999999999999999999999999999999999


Q ss_pred             EEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCC
Q 048556          320 VLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQ  399 (478)
Q Consensus       320 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~  399 (478)
                      |++||+|+++++.+++|+++++|||+|.||+|||||||.... +++++++++|++.+++++++.++|+||||.+||+|.+
T Consensus      1343 I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~ 1421 (1522)
T TIGR00957      1343 IIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS-QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGEN 1421 (1522)
T ss_pred             EEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc-CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCc
Confidence            999999999999999999999999999999999999998443 5899999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556          400 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK  478 (478)
Q Consensus       400 LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~  478 (478)
                      ||||||||+||||||+++|+|||||||||+||++|++.|.+.|++..+++|+|+||||++++.+||||+||++|+|+|.
T Consensus      1422 LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~ 1500 (1522)
T TIGR00957      1422 LSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEF 1500 (1522)
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEE
Confidence            9999999999999999999999999999999999999999999998889999999999999999999999999999973

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=100.00  E-value=1.2e-80  Score=669.48  Aligned_cols=463  Identities=23%  Similarity=0.316  Sum_probs=413.9

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhH
Q 048556            3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGE-KVGKFIQLLATFIGGFVIALSKGW   81 (478)
Q Consensus         3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   81 (478)
                      +..+.+.++..++|.++|+|++++|+.      ..++..+++.+|++.+++++.. .+..++..++.++. ++++++++|
T Consensus        69 ~~~~~~~~~~~~lr~~~~~~ll~~~~~------~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~  141 (544)
T TIGR01842        69 VLVRIGEKLDGALNQPIFAASFSATLR------RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIY-LLVCFLLHP  141 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCccc------CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHhh
Confidence            456678899999999999999999983      2356688899999999998877 45555555555544 456788999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           82 LLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEG  161 (478)
Q Consensus        82 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~  161 (478)
                      ++++++++.+|+++++..++.++.++..++.++..++..+.+.|.++|+++||+||.|+.+.++|++..+++.+...+..
T Consensus       142 ~l~li~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~  221 (544)
T TIGR01842       142 WIGILALGGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAAS  221 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999888888887777777888888888999999999999999999999999999999999999999999988888877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 048556          162 LAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERK  241 (478)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~  241 (478)
                      +..+.......++..+..++++++|++++.+|.+|+|+++++..++..+..|+..+...+..++++..+.+|+.++++.+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~  301 (544)
T TIGR01842       222 DRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANY  301 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            77777777777777778888889999999999999999999999999999999999999999999999999999999765


Q ss_pred             CCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEE
Q 048556          242 PLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL  321 (478)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~  321 (478)
                      ++....    ...+...+.++++||+|+|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.
T Consensus       302 ~~~~~~----~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~  376 (544)
T TIGR01842       302 PSRDPA----MPLPEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVR  376 (544)
T ss_pred             ccccCC----CCCCCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence            432211    1112223569999999999743 35799999999999999999999999999999999999999999999


Q ss_pred             ECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 048556          322 IDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLS  401 (478)
Q Consensus       322 ~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LS  401 (478)
                      +||+++.+++.+++|+.++||||+|++|++|++||+.++.+++++++++++++.++++++++++|+|+||.+|++|.+||
T Consensus       377 ~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LS  456 (544)
T TIGR01842       377 LDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLS  456 (544)
T ss_pred             ECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCC
Confidence            99999999999999999999999999999999999998887789999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       402 gGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      ||||||++||||++++|+++|||||||+||+++++.+.+.|++.. +++|+|+||||++.++.||+|++|++|++++
T Consensus       457 gGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~  533 (544)
T TIGR01842       457 GGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIAR  533 (544)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEe
Confidence            999999999999999999999999999999999999999999875 5799999999999999999999999999986

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.1e-81  Score=633.95  Aligned_cols=469  Identities=29%  Similarity=0.421  Sum_probs=412.0

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhH
Q 048556            3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIA-LSKGW   81 (478)
Q Consensus         3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   81 (478)
                      .+.++.+++..+.-.++|++++++++++|.++ .+|++.+.+..-...+..++...+..++..++.+......+ .-.++
T Consensus        97 vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~-~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga  175 (591)
T KOG0057|consen   97 VFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSR-GTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGA  175 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCC-CcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence            45678889999999999999999999999999 89999999999999998888887777777766655544333 34677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           82 LLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEG  161 (478)
Q Consensus        82 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~  161 (478)
                      ..+++.++....+............+..++...+.......+.|++.+.++||.||.|+++.++|+....++.+...+..
T Consensus       176 ~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~  255 (591)
T KOG0057|consen  176 AFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYS  255 (591)
T ss_pred             HHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHH
Confidence            77777777666666665555666666777778888888999999999999999999999999999999999999988887


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 048556          162 LAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERK  241 (478)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~  241 (478)
                      ...++....-.++.......+.++|..-+.++.+|+|+++.+..++.++..|+..+...+..+.++..-+.-++.+.+..
T Consensus       256 ~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~  335 (591)
T KOG0057|consen  256 SSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVD  335 (591)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhh
Confidence            77777777767777677777777787778899999999999999999999999999999999888888777776654432


Q ss_pred             CCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEE
Q 048556          242 PLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL  321 (478)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~  321 (478)
                      ....+   ...+....++.|+|+||+|.|++  ++++|+++||+|++||+|||||+|||||||++|+|.++++ ++|+|+
T Consensus       336 ~~i~~---~~~~i~~~~~~I~F~dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~  409 (591)
T KOG0057|consen  336 EDIQE---AALPIELFGGSIEFDDVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSIL  409 (591)
T ss_pred             hhhhh---ccCCcccCCCcEEEEeeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEE
Confidence            21111   11222334567999999999974  4679999999999999999999999999999999999999 899999


Q ss_pred             ECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 048556          322 IDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLS  401 (478)
Q Consensus       322 ~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LS  401 (478)
                      +||+++++++++++|+.|||||||..||++||.+||.+|+|.+++||+.++|+.+++||.+.++|+||+|.+||+|..||
T Consensus       410 IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LS  489 (591)
T KOG0057|consen  410 IDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLS  489 (591)
T ss_pred             ECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556          402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK  478 (478)
Q Consensus       402 gGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~  478 (478)
                      ||||||++||||+++||||+++|||||+||.+||+.+++.+.+...+||+|+|.||++++++||+|+++++|++.|.
T Consensus       490 GGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~  566 (591)
T KOG0057|consen  490 GGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEY  566 (591)
T ss_pred             cchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEe
Confidence            99999999999999999999999999999999999999999998889999999999999999999999999999863

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.8e-83  Score=637.02  Aligned_cols=471  Identities=30%  Similarity=0.430  Sum_probs=405.5

Q ss_pred             eehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556            2 ACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQ--DSIGEKVGKFIQLLATFIGGFVIALSK   79 (478)
Q Consensus         2 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (478)
                      ++|-.+.+-..+++-..+|+|+.++++.|+-++ ++|+++.-+...+..+.  +++...+.+.+.++...++.+  .+..
T Consensus       281 fLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~r-rtGeVLrvmdrGtssvtll~yvVF~i~PtllDl~va~vYF--~~~F  357 (790)
T KOG0056|consen  281 FLWIPVQQYTTREIETELFRHLHNLSLRWHLNR-RTGEVLRVMDRGTSSVTLLEYVVFQIGPTLLDLGVAMVYF--FIKF  357 (790)
T ss_pred             eEEEEhhHhHHHHHHHHHHHHHHhhceeeeecc-cccceeehhccCcchhhHHHHHHhhcccHHHHhhhhhhhh--hhhH
Confidence            466677778888999999999999999999998 99999887775554433  333333333333333333222  2346


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Q 048556           80 GWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVH  159 (478)
Q Consensus        80 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~  159 (478)
                      +|+.+++++++..++.........-..+..++...++.+......|++-+++++|-||.|+.+.++|.+...++.+...+
T Consensus       358 n~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~k  437 (790)
T KOG0056|consen  358 NIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWK  437 (790)
T ss_pred             hHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHH
Confidence            89999988887777665544444444556666666667777788999999999999999999999999999999888777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 048556          160 EGLAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIE  239 (478)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~  239 (478)
                      ......+....-..+..+..++.-.+++|+|..+.+++|+.+.+..|..++.+|+..++..+..+++....+++++|+++
T Consensus       438 s~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllk  517 (790)
T KOG0056|consen  438 SLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLK  517 (790)
T ss_pred             HHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhh
Confidence            65555555555555555555555556677888999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccE
Q 048556          240 RKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE  319 (478)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~  319 (478)
                      ++++..+.+ +..+.....|.|+|+||+|.|+  +++|+|+|+||+++||+.+|+|||||+||||++++|.++++.++|.
T Consensus       518 ee~eVvd~P-~a~pl~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGs  594 (790)
T KOG0056|consen  518 EEPEVVDLP-GAPPLKVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGS  594 (790)
T ss_pred             cCchhhcCC-CCCCccccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCce
Confidence            888765543 3445555678999999999996  4579999999999999999999999999999999999999999999


Q ss_pred             EEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCC
Q 048556          320 VLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQ  399 (478)
Q Consensus       320 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~  399 (478)
                      |.+||+|++.+...++|++||+||||..||++||..||.+++|.+++||+.+|++.+++||.|.++|+||+|.+||+|-.
T Consensus       595 I~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLk  674 (790)
T KOG0056|consen  595 ITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLK  674 (790)
T ss_pred             EEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556          400 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK  478 (478)
Q Consensus       400 LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~  478 (478)
                      ||||||||+||||+++++|.+++|||+||+||..+|+.|..++.+++.++|.|+|+||++++-+||.|+|+++|+|+|+
T Consensus       675 LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvEr  753 (790)
T KOG0056|consen  675 LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVER  753 (790)
T ss_pred             cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeec
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999985

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=1.3e-79  Score=721.85  Aligned_cols=470  Identities=21%  Similarity=0.289  Sum_probs=376.1

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556            3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL   82 (478)
Q Consensus         3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (478)
                      +..+.+.+...++|.++|++++++|+.||+++ ++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.
T Consensus       976 ~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~-~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~ 1054 (1622)
T PLN03130        976 WLIMSSLYAAKRLHDAMLGSILRAPMSFFHTN-PLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTI 1054 (1622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHhccC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567899999999999999999999999998 99999999999999999999999888998888888888877777774


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL  162 (478)
Q Consensus        83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  162 (478)
                      ..++++.+..+++.+..++.+..++..+......+...+.+.|+++|+++||+|+.++++.+++.+..+...+.......
T Consensus      1055 ~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~ 1134 (1622)
T PLN03130       1055 SLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMS 1134 (1622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43333332222333334445555666666677778899999999999999999999887766665555444333222111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556          163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKG-YK-----GGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFE  236 (478)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~-ls-----~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~  236 (478)
                      ...+......+   +..+++++.+.+.+..+. .+     .+.+..++.++..+..++..+...+..+.....|++|+.+
T Consensus      1135 ~~~wl~~~l~~---~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e 1211 (1622)
T PLN03130       1135 SNRWLAIRLET---LGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGT 1211 (1622)
T ss_pred             HHHHHHHHHHH---HHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11121111222   222223333444444432 11     1222223334455556677777778888999999999999


Q ss_pred             HHccCCCcccCCCCCCcc--CCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556          237 AIERKPLIDAYDSNGVKL--DDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       237 ~l~~~~~~~~~~~~~~~~--~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      +++.+++.+...++..++  .+..+.|+|+||+|+|+++ .+++|+|+||+|+|||++|||||||||||||+++|+|+|+
T Consensus      1212 ~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~ 1290 (1622)
T PLN03130       1212 YIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE 1290 (1622)
T ss_pred             HhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence            998765532211111111  1234689999999999643 3579999999999999999999999999999999999999


Q ss_pred             CCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcccccc
Q 048556          315 PQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVG  394 (478)
Q Consensus       315 ~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~  394 (478)
                      |++|+|++||+|+++++.+++|++|++|||+|.||+|||||||.++. +++++++++|++.++++++++++|+||||.+|
T Consensus      1291 p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vg 1369 (1622)
T PLN03130       1291 LERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADLWESLERAHLKDVIRRNSLGLDAEVS 1369 (1622)
T ss_pred             CCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCCHHHHHHHHHHcCcHHHHHhCccccCcccc
Confidence            99999999999999999999999999999999999999999999987 47999999999999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCE
Q 048556          395 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGK  474 (478)
Q Consensus       395 ~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~  474 (478)
                      |+|.+|||||||||||||||+++|+|||||||||+||.+|++.|.+.|++..+++|+|+||||++++++||||+||++|+
T Consensus      1370 e~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~ 1449 (1622)
T PLN03130       1370 EAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGR 1449 (1622)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCE
Confidence            99999999999999999999999999999999999999999999999999888999999999999999999999999999


Q ss_pred             EeeC
Q 048556          475 LVEK  478 (478)
Q Consensus       475 i~~~  478 (478)
                      |+|.
T Consensus      1450 IvE~ 1453 (1622)
T PLN03130       1450 VVEF 1453 (1622)
T ss_pred             EEEe
Confidence            9973

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=1.6e-79  Score=720.12  Aligned_cols=470  Identities=21%  Similarity=0.286  Sum_probs=402.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 048556            6 VTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLLTL   85 (478)
Q Consensus         6 ~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l   85 (478)
                      ..+.+...++|.++|+++++.|+.||++. ++|++++|+++|++.+++.+...+..++..++.+++.++++++.+|.+.+
T Consensus      1024 ~~~~~~~~~l~~~l~~~ll~~p~~ffd~~-~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~ 1102 (1560)
T PTZ00243       1024 EAMRRGSRNMHRDLLRSVSRGTMSFFDTT-PLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLV 1102 (1560)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCChhhccCC-CccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566778999999999999999999998 89999999999999999999999999999999988888888888886555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           86 VMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAG  165 (478)
Q Consensus        86 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (478)
                      +++.+..+++.+..++.+..++..+......+...+.+.|+++|+++||+|+.++.+.+++.+..+...+..+.......
T Consensus      1103 ~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~ 1182 (1560)
T PTZ00243       1103 ALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANR 1182 (1560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444434445556666777777777788888999999999999999999999999999999988888877766655555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Q 048556          166 LGFGAFTFVAFSSYSLAIWFGGKMI--LEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPL  243 (478)
Q Consensus       166 ~~~~~~~~~~~~~~~~~l~~g~~lv--~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~  243 (478)
                      +......++..+..+++.+++.+..  ..+.+++|.+..++.++..+..++..+...+..+..++.+++|+.++++..++
T Consensus      1183 w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~ 1262 (1560)
T PTZ00243       1183 WLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPH 1262 (1560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            5555556655555444444444433  34557899887777787888889999999999999999999999999964332


Q ss_pred             cccCC-------------------------CCCC----ccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEE
Q 048556          244 IDAYD-------------------------SNGV----KLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAAL  294 (478)
Q Consensus       244 ~~~~~-------------------------~~~~----~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~i  294 (478)
                      ++...                         ....    +.+...+.|+|+||+|+|+++ .+++|+|+||+|++||++||
T Consensus      1263 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vsf~I~~GekVaI 1341 (1560)
T PTZ00243       1263 EDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGVSFRIAPREKVGI 1341 (1560)
T ss_pred             cccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecceEEECCCCEEEE
Confidence            21000                         0000    011124679999999999753 34699999999999999999


Q ss_pred             EcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHH
Q 048556          295 VGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAE  374 (478)
Q Consensus       295 vG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~  374 (478)
                      ||+||||||||+++|+|+|+|++|+|++||+|+.+++.+++|++|+||||+|.||+|||||||..+. +++++++++|++
T Consensus      1342 VGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~-~~sdeeI~~Al~ 1420 (1560)
T PTZ00243       1342 VGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL-EASSAEVWAALE 1420 (1560)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCccc-CCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999998754 689999999999


Q ss_pred             HhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC-CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 048556          375 LANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD-PRILLLDEATSALDAESERVVQEALDKIMINRTTVI  453 (478)
Q Consensus       375 ~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~-~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~  453 (478)
                      ++++++++..+|+||||.+||+|.+|||||||||||||||+++ |+|||||||||+||+++++.|.+.|++..+++|+|+
T Consensus      1421 ~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~ 1500 (1560)
T PTZ00243       1421 LVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVIT 1500 (1560)
T ss_pred             HCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEE
Confidence            9999999999999999999999999999999999999999996 899999999999999999999999999888999999


Q ss_pred             EecCchhhhhcCEEEEEeCCEEeeC
Q 048556          454 VAHRLSTVRNADLIAVIHQGKLVEK  478 (478)
Q Consensus       454 itH~~~~~~~~d~i~vl~~G~i~~~  478 (478)
                      ||||++++++||+|+||++|+|+|.
T Consensus      1501 IAHRl~ti~~~DrIlVLd~G~VvE~ 1525 (1560)
T PTZ00243       1501 IAHRLHTVAQYDKIIVMDHGAVAEM 1525 (1560)
T ss_pred             EeccHHHHHhCCEEEEEECCEEEEE
Confidence            9999999999999999999999873

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=9.5e-79  Score=708.69  Aligned_cols=469  Identities=35%  Similarity=0.587  Sum_probs=426.5

Q ss_pred             eehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 048556            2 ACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGW   81 (478)
Q Consensus         2 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (478)
                      +|+.+.+.++..++|.++|++++++|..||++. ++|++.+++++|++.++..+...+..++..++.+++.++++++++|
T Consensus       119 ~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~-~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw  197 (1466)
T PTZ00265        119 FCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNN-PGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNA  197 (1466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            478899999999999999999999999999998 8999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           82 LLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEG  161 (478)
Q Consensus        82 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~  161 (478)
                      .+++++++++|+++++..++.+++++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|.+..+.+.+...+..
T Consensus       198 ~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~  277 (1466)
T PTZ00265        198 RLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKAN  277 (1466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988888888888999999999999999999999999999999999999999888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556          162 LAAGLGFGAFTFVAFSSYSLAIWFGGKMILEK--------GYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYK  233 (478)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g--------~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~r  233 (478)
                      ...++..++..++..+.+++++|+|++++.+|        .+++|++++++......+.++..+.+.+..++.+.+|++|
T Consensus       278 ~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~r  357 (1466)
T PTZ00265        278 FMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNS  357 (1466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888999999999999986        5889998887766666566667777788999999999999


Q ss_pred             HHHHHccCCCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          234 LFEAIERKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       234 i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      ++++++.+++.+... ++...+.. ..|+++||+|+|+++++.++|+|+||+|++||++||+||||||||||+++|+|+|
T Consensus       358 i~~ii~~~~~~~~~~-~~~~~~~~-~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~  435 (1466)
T PTZ00265        358 LYEIINRKPLVENND-DGKKLKDI-KKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLY  435 (1466)
T ss_pred             HHHHHcCCCCCCCCC-CCccCCCC-CcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            999998766533211 11111222 3799999999998543457999999999999999999999999999999999999


Q ss_pred             CCCccEEEE-CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCC------------------------------
Q 048556          314 DPQAGEVLI-DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKD------------------------------  362 (478)
Q Consensus       314 ~~~~G~i~~-~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~------------------------------  362 (478)
                      +|++|+|++ ||+++.+++.+.+|++|+||||+|.+|++||+|||.+|.+                              
T Consensus       436 ~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  515 (1466)
T PTZ00265        436 DPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCR  515 (1466)
T ss_pred             cCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhcccccccccccccccccccccc
Confidence            999999999 5799999999999999999999999999999999999741                              


Q ss_pred             ---------------------------CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556          363 ---------------------------GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL  415 (478)
Q Consensus       363 ---------------------------~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall  415 (478)
                                                 ++++++++++++.+++++++..+|+||||.+|++|.+||||||||++|||||+
T Consensus       516 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll  595 (1466)
T PTZ00265        516 AKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAII  595 (1466)
T ss_pred             ccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHh
Confidence                                       24678999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhhcCEEEEEeCC
Q 048556          416 KDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRNADLIAVIHQG  473 (478)
Q Consensus       416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~vl~~G  473 (478)
                      ++|++||||||||+||+.+++.+.+.|+++.  +++|+|+||||+++++.||+|++|++|
T Consensus       596 ~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g  655 (1466)
T PTZ00265        596 RNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNR  655 (1466)
T ss_pred             cCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence            9999999999999999999999999999885  479999999999999999999999997

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=6.1e-79  Score=715.62  Aligned_cols=469  Identities=20%  Similarity=0.292  Sum_probs=376.6

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556            3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL   82 (478)
Q Consensus         3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (478)
                      +....+.+...++|.++++++++.|+.||++. ++|++++|+++|++.+++.+...+..++..++.+++.+++++.+++.
T Consensus       973 ~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~-~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~ 1051 (1495)
T PLN03232        973 WLISSSLHAAKRLHDAMLNSILRAPMLFFHTN-PTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTI 1051 (1495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcC-CchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567889999999999999999999999998 89999999999999999999998888888888887777777766664


Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           83 LTLVMLSSIPAIV-LTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEG  161 (478)
Q Consensus        83 l~li~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~  161 (478)
                      ..+++ +++++++ ++..++.+..++..+......+...+.+.|+++|+++||+|+.++++.+++.+..+...+......
T Consensus      1052 ~~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~ 1130 (1495)
T PLN03232       1052 SLWAI-MPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANT 1130 (1495)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43333 2232222 232333344455666777788889999999999999999999998877766665555444332221


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCC----CHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556          162 LAAGLGFGAFTFVAFSSYSLAIWFGGKMILE-KGY----KGGDVI-NVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLF  235 (478)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~-g~l----s~G~l~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~  235 (478)
                      ....+....   +..+..+++++.+.+.+.. +.+    ..+..+ .++.++..+..++..+...+..+..+..+++|+.
T Consensus      1131 ~~~~wl~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~ 1207 (1495)
T PLN03232       1131 SSNRWLTIR---LETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVG 1207 (1495)
T ss_pred             HHHHHHHHH---HHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111111111   1122222333334444443 322    112222 2344555566688888888999999999999999


Q ss_pred             HHHccCCCcccCCCCCCcc--CCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          236 EAIERKPLIDAYDSNGVKL--DDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       236 ~~l~~~~~~~~~~~~~~~~--~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      ++++.+++.+...++..++  .+..+.|+|+||+|+|+++ .+++|+|+||+|+|||++|||||||||||||+++|+|+|
T Consensus      1208 e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~ 1286 (1495)
T PLN03232       1208 NYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIV 1286 (1495)
T ss_pred             HHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            9998765533211111111  1234679999999999643 357999999999999999999999999999999999999


Q ss_pred             CCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccc
Q 048556          314 DPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMV  393 (478)
Q Consensus       314 ~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~  393 (478)
                      +|++|+|.+||+|+++++.+++|++++||||+|.+|+|||||||.++. +++++++++|++.++++++++++|+||||.+
T Consensus      1287 ~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v 1365 (1495)
T PLN03232       1287 ELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWEALERAHIKDVIDRNPFGLDAEV 1365 (1495)
T ss_pred             cCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHHHHHHcCCHHHHHhCcCCCCcee
Confidence            999999999999999999999999999999999999999999999986 5899999999999999999999999999999


Q ss_pred             cCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCC
Q 048556          394 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQG  473 (478)
Q Consensus       394 ~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G  473 (478)
                      ||+|.+|||||||||||||||+++|+|||||||||+||++|++.|.+.|++..+++|+|+||||++++++||+|+||++|
T Consensus      1366 ~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G 1445 (1495)
T PLN03232       1366 SEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSG 1445 (1495)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECC
Confidence            99999999999999999999999999999999999999999999999999988899999999999999999999999999


Q ss_pred             EEeeC
Q 048556          474 KLVEK  478 (478)
Q Consensus       474 ~i~~~  478 (478)
                      +|+|.
T Consensus      1446 ~ivE~ 1450 (1495)
T PLN03232       1446 QVLEY 1450 (1495)
T ss_pred             EEEEE
Confidence            99973

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=100.00  E-value=4.8e-78  Score=650.09  Aligned_cols=462  Identities=20%  Similarity=0.165  Sum_probs=395.6

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556            3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL   82 (478)
Q Consensus         3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (478)
                      +....+.++..++|.++|+|++++|+.+|++. ++|++++|+++|++.+++++.. ++.++..++.++++++++++++|.
T Consensus        76 ~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~-~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~  153 (555)
T TIGR01194        76 FPAYAGMHIIANLRIALCEKILGAPIEEIDRR-GAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVP  153 (555)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhc-CcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHH
Confidence            45678899999999999999999999999998 8999999999999999998864 777788888888888899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHH--HHHHHHHHHHHHHHHHHHHH
Q 048556           83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEK--QAVAKYNESLTKAYKSGVHE  160 (478)
Q Consensus        83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~--~~~~~~~~~~~~~~~~~~~~  160 (478)
                      +++++++.+|+.+++..++.++.++...+.++..++.++.+.|.+.|++++|+|+.++  ...+++.+..+++.+...+.
T Consensus       154 L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (555)
T TIGR01194       154 MFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIE  233 (555)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            9999988888888877777788888888889999999999999999999999999954  55778888888887776665


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 048556          161 GLAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIER  240 (478)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~  240 (478)
                      .+..........++..+...+.+++|++.   |.+|+|+++++..+...+..|+..+.+.+..++++.++++|+.++++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~  310 (555)
T TIGR01194       234 ILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGER  310 (555)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            55544444444444444344444555443   789999999999999999999999999999999999999999999753


Q ss_pred             CCCccc----CCCCCC---ccCCCCccEEEEeEEEECCCCC--CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhc
Q 048556          241 KPLIDA----YDSNGV---KLDDIRGDIELKDIYFSYPSRP--GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       241 ~~~~~~----~~~~~~---~~~~~~~~i~~~~v~~~y~~~~--~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      +++++.    +..+..   ++....+.|+++||+|+|++.+  .+++|+|+||++++||+++|+||||||||||+++|+|
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g  390 (555)
T TIGR01194       311 FNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCG  390 (555)
T ss_pred             hccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            211100    000000   1112235799999999997531  2369999999999999999999999999999999999


Q ss_pred             cCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc
Q 048556          312 FYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDT  391 (478)
Q Consensus       312 ~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t  391 (478)
                      +|+|++|+|.+||.++.+++.+++|++++||+|++++|++|+++|+   .+++++++++++++.++++++++.+|+||||
T Consensus       391 ~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t  467 (555)
T TIGR01194       391 LYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGGFST  467 (555)
T ss_pred             CCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhcccccccCC
Confidence            9999999999999999999999999999999999999999999995   4667899999999999999999999999999


Q ss_pred             cccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH-Hh-cCCCeEEEEecCchhhhhcCEEEE
Q 048556          392 MVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALD-KI-MINRTTVIVAHRLSTVRNADLIAV  469 (478)
Q Consensus       392 ~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~-~~-~~~~t~i~itH~~~~~~~~d~i~v  469 (478)
                      .     .+||||||||++||||++++|+++|||||||+||+++++.+.+.+. .. .+++|+|+||||+++++.||+|++
T Consensus       468 ~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~  542 (555)
T TIGR01194       468 T-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIK  542 (555)
T ss_pred             c-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEE
Confidence            5     8899999999999999999999999999999999999999998764 34 357999999999999999999999


Q ss_pred             EeCCEEee
Q 048556          470 IHQGKLVE  477 (478)
Q Consensus       470 l~~G~i~~  477 (478)
                      |++|+++|
T Consensus       543 l~~G~i~~  550 (555)
T TIGR01194       543 LAAGCIVK  550 (555)
T ss_pred             EECCEEEE
Confidence            99999987

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4e-78  Score=595.10  Aligned_cols=472  Identities=31%  Similarity=0.425  Sum_probs=416.8

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhH
Q 048556            3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGF-VIALSKGW   81 (478)
Q Consensus         3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   81 (478)
                      ++...++.....+--..|.|+.++++.|+.++ ++|.+..-+....+.++......+...+..++-+.... +++..++|
T Consensus         5 ~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r-~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~   83 (497)
T COG5265           5 LFSPVGQIAVRVLAYVTFFHLHSLSLRFHLER-RTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGW   83 (497)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhcchhhhhhc-ccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhccc
Confidence            56778888999999999999999999999998 89998877777676776666666666655555444433 44556899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           82 LLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEG  161 (478)
Q Consensus        82 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~  161 (478)
                      +.+++.++++.++.++......-.....++..++.++.+....|++-+.+++|.||.|+.+..+|.+..+.+.+...+..
T Consensus        84 ~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~  163 (497)
T COG5265          84 WFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVH  163 (497)
T ss_pred             HHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHH
Confidence            99999888888777665554444455666777788888999999999999999999999999999999999999888876


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 048556          162 LAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERK  241 (478)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~  241 (478)
                      ....+....-..+......+....++..+..|.+|+|+++....+..+...|+..++..+..+.+++...++++++++.+
T Consensus       164 ~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~  243 (497)
T COG5265         164 VSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVE  243 (497)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccc
Confidence            66666666666666666677777888889999999999999999999999999999999999999999999999999877


Q ss_pred             CCcccCCCCCCccC-CCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEE
Q 048556          242 PLIDAYDSNGVKLD-DIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV  320 (478)
Q Consensus       242 ~~~~~~~~~~~~~~-~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i  320 (478)
                      .+..+.+ +.++.. ...+.+.|+||+|.|.+  .+|+|+++||++++|+++|+|||||+||||++++|.++|++++|.|
T Consensus       244 ~~v~d~p-da~~L~~~~~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I  320 (497)
T COG5265         244 AEVSDAP-DAPPLWPVRLGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSI  320 (497)
T ss_pred             hhhccCC-CCccccccccceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceE
Confidence            6554432 233333 34578999999999974  4799999999999999999999999999999999999999999999


Q ss_pred             EECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCC
Q 048556          321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQL  400 (478)
Q Consensus       321 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~L  400 (478)
                      .+||+|+.+...+++|+.||.||||..||++|+..|+.+|+|+++++|++.|++.+.++++|+.+|+||+|.|||+|-.|
T Consensus       321 ~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerglkl  400 (497)
T COG5265         321 TIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKL  400 (497)
T ss_pred             EEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556          401 SGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK  478 (478)
Q Consensus       401 SgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~  478 (478)
                      |||||||+||||+++++|+|++|||+||+||..||+.|...|++...++|.++|+||++++-+||.|+||++|+|+|+
T Consensus       401 Sggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~er  478 (497)
T COG5265         401 SGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVER  478 (497)
T ss_pred             cCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEec
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999985

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=2.7e-76  Score=692.31  Aligned_cols=467  Identities=19%  Similarity=0.264  Sum_probs=388.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 048556            4 WIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLL   83 (478)
Q Consensus         4 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   83 (478)
                      +.+.+.+...++|.++++++++.|+.||++. ++|++++|+++|++.+++.+...+..++..++.+++.++++++++|++
T Consensus       949 ~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~-~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l 1027 (1490)
T TIGR01271       949 LVHTLLTVSKRLHEQMLHSVLQAPMAVLNTM-KAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYI 1027 (1490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556778999999999999999999999997 999999999999999999999999999999999998888888899987


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           84 TLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLA  163 (478)
Q Consensus        84 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  163 (478)
                      ++++++++++++++..++.+..++..+......+.+.+.+.|++.|+.+||+|++++.+.+++.+..+...+..+.....
T Consensus      1028 ~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1107 (1490)
T TIGR01271      1028 FIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLST 1107 (1490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76655555555555566666667777777888889999999999999999999999999999998887655444333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Q 048556          164 AGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPL  243 (478)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~  243 (478)
                      ..+......++..+..+++.++   .+.....+.|.+..++.++..+..++..+...+..+...+.|++|+.++.+.+++
T Consensus      1108 ~~wl~~~~~~i~~~~~~~~~~l---~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e 1184 (1490)
T TIGR01271      1108 LRWFQMRIDIIFVFFFIAVTFI---AIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQE 1184 (1490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            3333333333222222111111   1112234455555555566666778888888889999999999999999976554


Q ss_pred             cccCCCC--------------CCcc--CCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHH
Q 048556          244 IDAYDSN--------------GVKL--DDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVIS  307 (478)
Q Consensus       244 ~~~~~~~--------------~~~~--~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~  307 (478)
                      .......              ..++  .+..+.|+|+||+|+|+++ .+++|+|+||+|++||++||||+||||||||++
T Consensus      1185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~ 1263 (1490)
T TIGR01271      1185 EPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLS 1263 (1490)
T ss_pred             cccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEECCCCCCHHHHHH
Confidence            3211100              0001  1234689999999999753 468999999999999999999999999999999


Q ss_pred             HHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCC
Q 048556          308 LIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQ  387 (478)
Q Consensus       308 ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~  387 (478)
                      +|+|+++ ++|+|++||+|+.+++.+++|++++||||+|++|+|||||||.... .++|+++++|++.+++++++..+|+
T Consensus      1264 lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~-~~tdeei~~aL~~~~L~~~i~~lp~ 1341 (1490)
T TIGR01271      1264 ALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE-QWSDEEIWKVAEEVGLKSVIEQFPD 1341 (1490)
T ss_pred             HHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc-CCCHHHHHHHHHHCCCHHHHHhCcc
Confidence            9999997 7899999999999999999999999999999999999999998654 5789999999999999999999999


Q ss_pred             CccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEE
Q 048556          388 GLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLI  467 (478)
Q Consensus       388 g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i  467 (478)
                      ||||.++|+|.+|||||||||||||||+++|+|||||||||+||++|++.|.+.|++..+++|+|+||||++++.+||+|
T Consensus      1342 GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrI 1421 (1490)
T TIGR01271      1342 KLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQF 1421 (1490)
T ss_pred             ccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEE
Confidence            99999999999999999999999999999999999999999999999999999999988899999999999999999999


Q ss_pred             EEEeCCEEee
Q 048556          468 AVIHQGKLVE  477 (478)
Q Consensus       468 ~vl~~G~i~~  477 (478)
                      +||++|+|+|
T Consensus      1422 lvL~~G~ivE 1431 (1490)
T TIGR01271      1422 LVIEGSSVKQ 1431 (1490)
T ss_pred             EEEECCEEEE
Confidence            9999999987

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.2e-76  Score=666.34  Aligned_cols=471  Identities=23%  Similarity=0.331  Sum_probs=415.2

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556            3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL   82 (478)
Q Consensus         3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (478)
                      .+...+.+....++..+++++++.|++||+.. ++|.|+||++.|++.+++.+...+..++..++.++++++++.+..|+
T Consensus       881 ~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtT-P~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~  959 (1381)
T KOG0054|consen  881 LFAKGGLKASRKLHDKLLNSILRAPMSFFDTT-PTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPW  959 (1381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcchhcCCC-CccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence            35668899999999999999999999999997 99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL  162 (478)
Q Consensus        83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  162 (478)
                      .+++++.+.++++.+..++.+..++..+-....++...+++.|++.|+.+||+|+.++++.+++.+..+...+..+-...
T Consensus       960 fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~ 1039 (1381)
T KOG0054|consen  960 FLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSIS 1039 (1381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHH
Confidence            98888888888888888888889999999999999999999999999999999999999999999988887776655544


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556          163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP  242 (478)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~  242 (478)
                      ...+...-..++..+...++..+.... ..+.++.|.+-..+.|+..+...++.+......+...+.|++|+.++.+.++
T Consensus      1040 a~RWla~Rle~ig~~~v~~~al~~vl~-~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~ 1118 (1381)
T KOG0054|consen 1040 ANRWLAVRLELLGNLVVLIAALFAVLL-PSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPS 1118 (1381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHc-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCC
Confidence            444444445555444333332222221 1222667877777888888888899999999999999999999999998665


Q ss_pred             Cccc-CCCC-CCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEE
Q 048556          243 LIDA-YDSN-GVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV  320 (478)
Q Consensus       243 ~~~~-~~~~-~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i  320 (478)
                      |.+. .+.+ .++..+..|+|+|+|++.+|.++ .++||+||||+|+|||+|||||++|||||||.++|.|+.+|.+|+|
T Consensus      1119 E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I 1197 (1381)
T KOG0054|consen 1119 EAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEI 1197 (1381)
T ss_pred             CCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeE
Confidence            5111 1111 12223456899999999999753 4689999999999999999999999999999999999999999999


Q ss_pred             EECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCC
Q 048556          321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQL  400 (478)
Q Consensus       321 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~L  400 (478)
                      .|||.|+.+++.+++|++++++||||.||+||+|.||.-.+ .++|+++|+|++.+++++.++++|.|+|+.+.|+|.|+
T Consensus      1198 ~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~-e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~ 1276 (1381)
T KOG0054|consen 1198 LIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFD-EYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENF 1276 (1381)
T ss_pred             EEcCeecccccHHHHHhcCeeeCCCCceecCccccccCccc-ccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccC
Confidence            99999999999999999999999999999999999997544 58999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          401 SGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       401 SgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      |-||||.+||||||+|+++||+|||+|+++|++|...|.+.|++..++||||.|+||++++.+||||+|||+|+++|
T Consensus      1277 SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~E 1353 (1381)
T KOG0054|consen 1277 SVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVE 1353 (1381)
T ss_pred             ChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=100.00  E-value=1.5e-75  Score=588.57  Aligned_cols=460  Identities=23%  Similarity=0.320  Sum_probs=413.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHH
Q 048556            5 IVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGE-KVGKFIQLLATFIGGFVIALSKGWLL   83 (478)
Q Consensus         5 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l   83 (478)
                      .++|.++...+...+|...++.+..   .+ .+|+=.+-+ +|.++++.|++. ....++...++++... ++|..+|++
T Consensus        88 ~Rig~~lD~~L~~~v~~a~~~~~l~---~~-~~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW~P~yl~-v~fl~Hp~l  161 (580)
T COG4618          88 VRIGERLDRQLNGPVFAASFSAPLL---RR-GSGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPWMPLYLA-VIFLFHPWL  161 (580)
T ss_pred             HHHHHHHHHHhccHHHHHHHhhHHh---hc-CCCccccch-hhHHHHHHHHcCCCcchhcCCchHHHHHH-HHHHHHHHH
Confidence            4677888888888888888766664   23 456555555 589999999987 4556666677776554 566778889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           84 TLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLA  163 (478)
Q Consensus        84 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  163 (478)
                      +++.++...+++.+..+-....++..++..+.....+....-+.++.++|+++|......++|.+.+.++...+.+..-.
T Consensus       162 G~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~  241 (580)
T COG4618         162 GLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDR  241 (580)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            99988888888888777677778888888888888889999999999999999999999999999999999988888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Q 048556          164 AGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPL  243 (478)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~  243 (478)
                      .+....++..+-.+.+.+++..|+|+++.|++|.|.+++-..+......|+......|.++..+..|++|+.+++...|.
T Consensus       242 ~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~  321 (580)
T COG4618         242 NGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPA  321 (580)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            88888999999999999999999999999999999999988888888899999999999999999999999999987665


Q ss_pred             cccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEEC
Q 048556          244 IDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID  323 (478)
Q Consensus       244 ~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~  323 (478)
                      ...    ..+.+..++.+.++++++.=|+. ++|+++++||++++||.+||+||||||||||.|+|.|.++|.+|.|++|
T Consensus       322 ~~~----~m~LP~P~g~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLD  396 (580)
T COG4618         322 AAE----RMPLPAPQGALSVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLD  396 (580)
T ss_pred             ccC----CCCCCCCCceeeEeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEec
Confidence            332    23445566889999999977654 5799999999999999999999999999999999999999999999999


Q ss_pred             CeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChH
Q 048556          324 GVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGG  403 (478)
Q Consensus       324 g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgG  403 (478)
                      |-|+.++|.+++-++|||.||+..||+|||+|||+-..++.+++++.+|++.+++||.|.++|+||||.+|+.|..||||
T Consensus       397 ga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgG  476 (580)
T COG4618         397 GADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGG  476 (580)
T ss_pred             chhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCch
Confidence            99999999999999999999999999999999999888889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEEeCCEE
Q 048556          404 QKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIAVIHQGKL  475 (478)
Q Consensus       404 q~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl~~G~i  475 (478)
                      |||||+|||||+.||.+++||||-|+||.+.|+.+.++|.+.+ +++|+|+||||++.+..+|+|++|++|++
T Consensus       477 QRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~  549 (580)
T COG4618         477 QRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRI  549 (580)
T ss_pred             HHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChH
Confidence            9999999999999999999999999999999999999998886 57999999999999999999999999986

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=1e-72  Score=663.03  Aligned_cols=451  Identities=21%  Similarity=0.271  Sum_probs=374.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 048556            5 IVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLLT   84 (478)
Q Consensus         5 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   84 (478)
                      .+.+.++...++..+|+|+++++..++++. ++|++++++++|++.+++++ ..+..++..++.+++++++++.   .++
T Consensus       366 ~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~-~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~~---~lg  440 (1495)
T PLN03232        366 GRVGFRLRSTLVAAIFHKSLRLTHEARKNF-ASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLYQ---QLG  440 (1495)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCChhhcCCC-CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHh
Confidence            467788888888899999999999999987 89999999999999999987 4555555566555554444332   222


Q ss_pred             HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           85 LVMLS---SIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEG  161 (478)
Q Consensus        85 li~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~  161 (478)
                      +..++   ++++++.+..++.+++++..++.++..+++.+.+.|.++|+++||.|++|+.+.+++++..++..+...+..
T Consensus       441 ~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~  520 (1495)
T PLN03232        441 VASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQ  520 (1495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22221   222222345566788889999999999999999999999999999999999999999998888777666655


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 048556          162 LAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERK  241 (478)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~  241 (478)
                      ...+.........  ...+.++++|++++.+|.+|+|.+++++.++..+..|+..++..+..+.++..+.+|+.++++.+
T Consensus       521 ~~~~~~~~~~~~~--~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~  598 (1495)
T PLN03232        521 LLSAFNSFILNSI--PVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSE  598 (1495)
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            5444433222111  12233467899999999999999999999999999999999999999999999999999999765


Q ss_pred             CCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEE
Q 048556          242 PLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL  321 (478)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~  321 (478)
                      ++.....   .......+.|+++|++|+|++++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+.
T Consensus       599 ~~~~~~~---~~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~  675 (1495)
T PLN03232        599 ERILAQN---PPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV  675 (1495)
T ss_pred             ccccccc---CCcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE
Confidence            4321111   1111122469999999999754346899999999999999999999999999999999999999998763


Q ss_pred             ECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 048556          322 IDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLS  401 (478)
Q Consensus       322 ~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LS  401 (478)
                                  .+|++|+||||+|++|+|||||||++|.| .++++++++++.++++++++.+|+|++|.+||+|.+||
T Consensus       676 ------------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~-~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LS  742 (1495)
T PLN03232        676 ------------VIRGSVAYVPQVSWIFNATVRENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNIS  742 (1495)
T ss_pred             ------------EecCcEEEEcCccccccccHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccC
Confidence                        35789999999999999999999999986 68899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556          402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEA-LDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK  478 (478)
Q Consensus       402 gGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~-l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~  478 (478)
                      |||||||+||||++++|+|+||||||||||+++++++++. ++...+++|+|+||||++.++.||+|++|++|+++++
T Consensus       743 GGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~  820 (1495)
T PLN03232        743 GGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEE  820 (1495)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEe
Confidence            9999999999999999999999999999999999988765 5655678999999999999999999999999999863

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=100.00  E-value=2e-72  Score=605.98  Aligned_cols=454  Identities=18%  Similarity=0.201  Sum_probs=364.6

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556            3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL   82 (478)
Q Consensus         3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (478)
                      +..+.+.++..++|.++|++++++|+.+|+++ ++|++++|+++|++.+..++. .++.++..++.++++++++++++|.
T Consensus        71 ~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~-~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~  148 (547)
T PRK10522         71 ALTTLGHHFVYRLRSEFIKRILDTHVERIEQL-GSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPK  148 (547)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHhcc-CccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            45668899999999999999999999999998 899999999999999998765 4677888888888888899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchH---HHHHHHHHHHHHHHHHHHHH
Q 048556           83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGE---KQAVAKYNESLTKAYKSGVH  159 (478)
Q Consensus        83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e---~~~~~~~~~~~~~~~~~~~~  159 (478)
                      +++++++++|+.+++..++.++.++..++.++..+++++.+.|.++|+++++ ++.+   +.+.+++++..+++.+...+
T Consensus       149 l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (547)
T PRK10522        149 MLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIR  227 (547)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHH
Confidence            9999999999888888888899999999999999999999999999999996 4443   35567888877777666555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 048556          160 EGLAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIE  239 (478)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~  239 (478)
                      .............++..+...+.+++++..   +..+.+.+..+..+......|+..+...+..++++..+.+|+.++++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~  304 (547)
T PRK10522        228 ADTFHLSAVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLAL  304 (547)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            544444333332222222222223333222   11233333333333444567999999999999999999999999875


Q ss_pred             cCCCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccE
Q 048556          240 RKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE  319 (478)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~  319 (478)
                      .+++.+...  ....+ ..+.++++||+|+|++  ++++|+|+||+|++||+++|+||||||||||+++|+|+|+|++|+
T Consensus       305 ~~~~~~~~~--~~~~~-~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~  379 (547)
T PRK10522        305 APYKAEFPR--PQAFP-DWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGE  379 (547)
T ss_pred             ccccccccc--ccccC-cCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence            433211111  11111 1247999999999974  247999999999999999999999999999999999999999999


Q ss_pred             EEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCC
Q 048556          320 VLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQ  399 (478)
Q Consensus       320 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~  399 (478)
                      |.+||+++.+++.+++|++++||||++++|++|++||   + ++.++++++++++..++.+++. .|+|.     .+|.+
T Consensus       380 i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l~~~~~-~~~~~-----~~G~~  449 (547)
T PRK10522        380 ILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKMAHKLE-LEDGR-----ISNLK  449 (547)
T ss_pred             EEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCCchhhh-ccccC-----CCCCC
Confidence            9999999999999999999999999999999999999   2 3566777776666666555443 23332     14789


Q ss_pred             CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          400 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       400 LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      ||||||||++||||++++|+++|||||||+||+++++.+.+.+.+..  +++|+|+||||++.++.||+|++|++|+++|
T Consensus       450 LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e  529 (547)
T PRK10522        450 LSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSE  529 (547)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999997553  4799999999999999999999999999986

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=2.8e-72  Score=659.99  Aligned_cols=453  Identities=21%  Similarity=0.284  Sum_probs=374.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 048556            5 IVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLLT   84 (478)
Q Consensus         5 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   84 (478)
                      .+.+.++...++..+|+|+++++...+++. ++|++++++++|++.+++++. .+..++..++.+++++++++..-.+.+
T Consensus       366 ~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~-~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~~~  443 (1622)
T PLN03130        366 MRVGFRLRSTLVAAVFRKSLRLTHEGRKKF-TSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGVAS  443 (1622)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCChhhcCCC-CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357788888899999999999999999987 899999999999999999884 455566666666655544443211122


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           85 LVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAA  164 (478)
Q Consensus        85 li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  164 (478)
                      ++.++++++++.+..++.+++++..++..+..+++.+.+.|.++|+++||.|++|+.+.+++++..++..+...+.....
T Consensus       444 l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~  523 (1622)
T PLN03130        444 LIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLS  523 (1622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222333344455567788888889999999999999999999999999999999999999888777666554444443


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc
Q 048556          165 GLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPLI  244 (478)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~  244 (478)
                      .....+....  ...+.++++|++.+..|.+|+|.+++++.++..+..|+..++..+..+.++.++++|+.++++.++..
T Consensus       524 ~~~~~~~~~~--~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~  601 (1622)
T PLN03130        524 AFNSFILNSI--PVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERV  601 (1622)
T ss_pred             HHHHHHHHHH--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence            3332221111  12345667899999999999999999988888889999999999999999999999999999754322


Q ss_pred             ccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCc-cEEEEC
Q 048556          245 DAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA-GEVLID  323 (478)
Q Consensus       245 ~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~-G~i~~~  323 (478)
                      ....   .......+.|+++|++|+|++++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.+ 
T Consensus       602 ~~~~---~~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-  677 (1622)
T PLN03130        602 LLPN---PPLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-  677 (1622)
T ss_pred             cccC---CcccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-
Confidence            1111   111111246999999999975434679999999999999999999999999999999999999999 89974 


Q ss_pred             CeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChH
Q 048556          324 GVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGG  403 (478)
Q Consensus       324 g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgG  403 (478)
                                  |++|+||||+|++|+|||||||++|.| .++++.+++++.++++++++.+|+|++|.+||+|.+||||
T Consensus       678 ------------~~~Iayv~Q~p~LfngTIreNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGG  744 (1622)
T PLN03130        678 ------------RGTVAYVPQVSWIFNATVRDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGG  744 (1622)
T ss_pred             ------------cCeEEEEcCccccCCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHH
Confidence                        678999999999999999999999997 5889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556          404 QKQRIAIARAILKDPRILLLDEATSALDAESERVVQE-ALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK  478 (478)
Q Consensus       404 q~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~-~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~  478 (478)
                      |||||+||||++++|+++||||||||||+++++++++ +++...+++|+|+|||+++.++.||+|++|++|+++++
T Consensus       745 QKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~  820 (1622)
T PLN03130        745 QKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEE  820 (1622)
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEe
Confidence            9999999999999999999999999999999988865 56666678999999999999999999999999999863

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=100.00  E-value=1e-66  Score=570.52  Aligned_cols=449  Identities=17%  Similarity=0.167  Sum_probs=377.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHH
Q 048556            5 IVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALS-KGWLL   83 (478)
Q Consensus         5 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l   83 (478)
                      .....++..++|..+|++....+..+|++  ++|++++|+++|++.+.+.+...+..++..++.++++.+.++. .+|.+
T Consensus       164 ~~~r~~l~~~l~~~~~~~~~~~~~~~~d~--~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l  241 (659)
T TIGR00954       164 LRFRVRLTRYLYSKYLSGFTFYKVSNLDS--RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVG  241 (659)
T ss_pred             HHHHHHHHHHHHHHHhCCCceEEeccCCC--CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence            34455555666666666666666667764  5899999999999999999999999999999999887777775 99999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           84 TLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLA  163 (478)
Q Consensus        84 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  163 (478)
                      ++++++..|+.+++.+++.+++.+..++.++..+++.+.+.|.++|+++||+|+.++.+.+++++..+++.+...+..+.
T Consensus       242 ~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~  321 (659)
T TIGR00954       242 PAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKF  321 (659)
T ss_pred             HHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHH-h----CCCCHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556          164 AGLGFGAFTFVAFS--SYSLAIWFGGKMIL-E----KGYKGGDVIN-VIFC---VMIGSMSLGQASPCISAFAAGQAAAY  232 (478)
Q Consensus       164 ~~~~~~~~~~~~~~--~~~~~l~~g~~lv~-~----g~ls~G~l~~-~~~~---~~~~~~~l~~l~~~~~~~~~~~~a~~  232 (478)
                      .+...++..++...  ..+++++.|...+. .    |.+|.|.+++ ++.+   +..+..|+..+...+..++++.++.+
T Consensus       322 ~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~  401 (659)
T TIGR00954       322 RFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTA  401 (659)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888887777643  23333333442332 2    7899998776 4443   34556789999999999999999999


Q ss_pred             HHHHHHccCCCccc-------C-C-CCC-------------CccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCC
Q 048556          233 KLFEAIERKPLIDA-------Y-D-SNG-------------VKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGT  290 (478)
Q Consensus       233 ri~~~l~~~~~~~~-------~-~-~~~-------------~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~  290 (478)
                      |+.++++.+++...       . . .+.             .......+.|+++||+|.|++  ++++|+|+||+|++||
T Consensus       402 Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~~~il~~isl~i~~Ge  479 (659)
T TIGR00954       402 RVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLSFEVPSGN  479 (659)
T ss_pred             HHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--CCeeeecceEEECCCC
Confidence            99999975332110       0 0 000             000112346999999999974  2479999999999999


Q ss_pred             EEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCC-------CC
Q 048556          291 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGK-------DG  363 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~-------~~  363 (478)
                      +++|+||||||||||+++|+|+++|++|+|.+++           |++++||||+|++|++|++||+.++.       +.
T Consensus       480 ~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~  548 (659)
T TIGR00954       480 HLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRG  548 (659)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccC
Confidence            9999999999999999999999999999998763           56899999999999999999999874       34


Q ss_pred             CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 048556          364 ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALD  443 (478)
Q Consensus       364 ~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~  443 (478)
                      .++++++++++.+++.++++. |.|+||..+ .+.+||||||||++||||++++|+++|||||||+||+++++.+.+.++
T Consensus       549 ~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~  626 (659)
T TIGR00954       549 LSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCR  626 (659)
T ss_pred             CCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence            567889999999999999887 999999876 577999999999999999999999999999999999999999999997


Q ss_pred             HhcCCCeEEEEecCchhhhhcCEEEEEeC
Q 048556          444 KIMINRTTVIVAHRLSTVRNADLIAVIHQ  472 (478)
Q Consensus       444 ~~~~~~t~i~itH~~~~~~~~d~i~vl~~  472 (478)
                      +.  ++|+|+||||++.++.||++++|+.
T Consensus       627 ~~--~~tvI~isH~~~~~~~~d~il~l~~  653 (659)
T TIGR00954       627 EF--GITLFSVSHRKSLWKYHEYLLYMDG  653 (659)
T ss_pred             Hc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence            73  7899999999999999999999974

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=5.9e-66  Score=606.76  Aligned_cols=455  Identities=21%  Similarity=0.250  Sum_probs=369.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 048556            4 WIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLL   83 (478)
Q Consensus         4 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   83 (478)
                      ..+.+.++...++..+|+|+++++...+++. ++|++++++++|++.+..+. ..+..++..++.+++++++++..-.+.
T Consensus       382 ~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~-~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~~g~~  459 (1522)
T TIGR00957       382 CFVSGMRIKTAVMGAVYRKALVITNSARKSS-TVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLNLGPS  459 (1522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCChhhcCCC-CHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            3567899999999999999999999999987 89999999999999998865 445555566666555554443322223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           84 TLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLA  163 (478)
Q Consensus        84 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  163 (478)
                      +++.++++++++.+..++.+++++..++..+..+++.+.+.|.++|+++||.+++|+.+.+++++..++..+...+....
T Consensus       460 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~  539 (1522)
T TIGR00957       460 VLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYL  539 (1522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555666667788889999999999999999999999999999999999999999998887776655444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 048556          164 AGLGFGAFTFVAFSSYSLAIWFGGKMILE--KGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERK  241 (478)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~l~~g~~lv~~--g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~  241 (478)
                      ......... . ....+.++.++.+.+..  +.++.+.+++.+.++..+..|+..+...+..+.++..+.+|+.++++.+
T Consensus       540 ~~~~~~~~~-~-~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~  617 (1522)
T TIGR00957       540 HAVGTFTWV-C-TPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHE  617 (1522)
T ss_pred             HHHHHHHHH-H-HHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            333222111 1 11122233355666653  5688888888887788888899999999999999999999999999765


Q ss_pred             CCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEE
Q 048556          242 PLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL  321 (478)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~  321 (478)
                      ++...............+.|+++|++|+|+++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.
T Consensus       618 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~  696 (1522)
T TIGR00957       618 ELEPDSIERRTIKPGEGNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVH  696 (1522)
T ss_pred             ccccccccccccCCCCCCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEE
Confidence            43211100000001112369999999999743 35799999999999999999999999999999999999999999999


Q ss_pred             ECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 048556          322 IDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLS  401 (478)
Q Consensus       322 ~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LS  401 (478)
                      +||             +|+||||+|++|++||+|||.+|.+ .++++..++++.+++.++++.+|+|++|.+|++|.+||
T Consensus       697 ~~g-------------~i~yv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LS  762 (1522)
T TIGR00957       697 MKG-------------SVAYVPQQAWIQNDSLRENILFGKA-LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLS  762 (1522)
T ss_pred             ECC-------------EEEEEcCCccccCCcHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCC
Confidence            986             5999999999999999999999975 46677888889999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH---hcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDK---IMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       402 gGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~---~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      ||||||++||||++++|+++|||||||+||+.+++.+++.+.+   ..+++|+|+|||+++.++.||+|++|++|++++
T Consensus       763 GGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~  841 (1522)
T TIGR00957       763 GGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISE  841 (1522)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEe
Confidence            9999999999999999999999999999999999999999864   346799999999999999999999999999976

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=2.4e-66  Score=583.13  Aligned_cols=456  Identities=23%  Similarity=0.266  Sum_probs=377.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 048556            4 WIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLL   83 (478)
Q Consensus         4 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   83 (478)
                      ..++|.|+...+-..+|+|.++++...-... .+|+++|.++.|+++++++.......+...+..+++...++..++|. 
T Consensus       266 ~~~~g~r~R~al~~~IY~K~L~ls~~~~~~~-t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~s-  343 (1381)
T KOG0054|consen  266 SFRVGMRLRSALISAIYRKALRLSNSARGET-TVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGPS-  343 (1381)
T ss_pred             HHhhhhhHHHHHHHHHHHhhhcCchhhccCC-CcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-
Confidence            4568889999999999999999999887676 79999999999999999988776665554444444443333345553 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           84 TLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLA  163 (478)
Q Consensus        84 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  163 (478)
                      +++.++++.+++.+..++.+++++.+++.....+++.+...|.++||++||.|+||+.+.++..+..++..+.-.+....
T Consensus       344 a~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~  423 (1381)
T KOG0054|consen  344 ALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYL  423 (1381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455556667778889999999999999999999999999999999999999999999998887777766555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556          164 AGLGFGAFTFVAFSSYSLAIWFGGKM-ILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP  242 (478)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~l~~g~~l-v~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~  242 (478)
                      .++..........+  +.++.++++. ...+.++....++.+.++..+..|+..++..+..+.++.++.+|+.+++..++
T Consensus       424 ~~~~~~~~~~~p~l--v~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e  501 (1381)
T KOG0054|consen  424 SALNSFLNFFSPVL--VSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEE  501 (1381)
T ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            55544333333222  2233455555 45677888788888889999999999999999999999999999999998654


Q ss_pred             CcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556          243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI  322 (478)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~  322 (478)
                      ....... ..+.......++++|.+|+|++.+..+.|+||||+|++|+.+|||||.|||||||+.+|+|..+..+|++.+
T Consensus       502 ~~~~~~~-~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v  580 (1381)
T KOG0054|consen  502 LDPDSVE-RSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAV  580 (1381)
T ss_pred             cCccccc-cCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEE
Confidence            3222111 011222334699999999998643456999999999999999999999999999999999999999999999


Q ss_pred             CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 048556          323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSG  402 (478)
Q Consensus       323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg  402 (478)
                      +|.             ++||||.||+|+|||||||.||.| .+.++-.++.+.|+++++++.||.|..|.+||+|.+|||
T Consensus       581 ~gs-------------iaYv~Q~pWI~ngTvreNILFG~~-~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSG  646 (1381)
T KOG0054|consen  581 NGS-------------VAYVPQQPWIQNGTVRENILFGSP-YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSG  646 (1381)
T ss_pred             cCe-------------EEEeccccHhhCCcHHHhhhcCcc-ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcH
Confidence            774             999999999999999999999997 577888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556          403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEA-LDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK  478 (478)
Q Consensus       403 Gq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~-l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~  478 (478)
                      ||||||+||||+++|++|++||+|.||+|+.+.+.+++. |+...++||+|+|||.++.+++||+|++|+||+|+++
T Consensus       647 GQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~  723 (1381)
T KOG0054|consen  647 GQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVES  723 (1381)
T ss_pred             hHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecc
Confidence            999999999999999999999999999999977766654 6667789999999999999999999999999999863

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=2.2e-63  Score=583.44  Aligned_cols=449  Identities=19%  Similarity=0.248  Sum_probs=371.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 048556            4 WIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLL   83 (478)
Q Consensus         4 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   83 (478)
                      ..+.+.++...+...+|+|+++++...+++. ++|++++++++|++.+...+.... .++..++.+++++++++....+.
T Consensus       146 ~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~-~~g~i~nl~s~Dv~~i~~~~~~~~-~~~~~pi~i~~~~~lL~~~~G~~  223 (1490)
T TIGR01271       146 LHHLGMQMRIALFSLIYKKTLKLSSRVLDKI-STGQLVSLLSNNLNKFDEGLALAH-FVWIAPLQVILLMGLIWELLEVN  223 (1490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHhcCC-CHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456777778888888999999999999987 899999999999999999876654 34455555555555555544556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           84 TLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLA  163 (478)
Q Consensus        84 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  163 (478)
                      +++.++++++++.+..++.+++.+..++.+...+++.+.+.|.++|+++||.+++|+.+.+++++..++..+...+....
T Consensus       224 ~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~  303 (1490)
T TIGR01271       224 GFCGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYL  303 (1490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67777777788888888899999999999999999999999999999999999999999999988887776665555544


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556          164 AGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSL-GQASPCISAFAAGQAAAYKLFEAIERKP  242 (478)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l-~~l~~~~~~~~~~~~a~~ri~~~l~~~~  242 (478)
                      .........+  ....+.++.+++|.+..+ ++++.+++++.++..+..|+ ..++..+..+.++.++++||.+++..++
T Consensus       304 ~~~~~~~~~~--~~~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e  380 (1490)
T TIGR01271       304 RYFYSSAFFF--SGFFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEE  380 (1490)
T ss_pred             HHHHHHHHHH--HHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            3332222221  222334555667766644 68898888888887777776 4788889999999999999999997643


Q ss_pred             CcccCCCCCCccCCCCccEEEEeEEEECCCC-------------------------------CCCcccccceeeecCCCE
Q 048556          243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSR-------------------------------PGEQIFNGFSLSIPSGTT  291 (478)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-------------------------------~~~~~l~~is~~i~~G~~  291 (478)
                      .... .   .  ......++++|++|.|+..                               ..+++|+|+||+|++||+
T Consensus       381 ~~~~-~---~--~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~  454 (1490)
T TIGR01271       381 YKTL-E---Y--NLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQL  454 (1490)
T ss_pred             cccc-c---c--cCCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCE
Confidence            2111 1   0  0112358999999999521                               013689999999999999


Q ss_pred             EEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHH
Q 048556          292 AALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMA  371 (478)
Q Consensus       292 ~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~  371 (478)
                      ++|+||||||||||+++|+|+++|++|+|.++|             .++||||+|++|++|++|||.+|.+ .+.++..+
T Consensus       455 ~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~  520 (1490)
T TIGR01271       455 LAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS-YDEYRYTS  520 (1490)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc-cchHHHHH
Confidence            999999999999999999999999999999987             4999999999999999999999865 45556677


Q ss_pred             HHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhcCCCe
Q 048556          372 AAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEA-LDKIMINRT  450 (478)
Q Consensus       372 a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~-l~~~~~~~t  450 (478)
                      +++.+++.+++..+|+|++|.+|++|.+||||||||++||||++.+|+++|||||||+||+.+++.+++. ++...+++|
T Consensus       521 ~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~t  600 (1490)
T TIGR01271       521 VIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKT  600 (1490)
T ss_pred             HHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCe
Confidence            7888899999999999999999999999999999999999999999999999999999999999999985 667667899


Q ss_pred             EEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          451 TVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       451 ~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      +|+|||+++.++.||+|++|++|++++
T Consensus       601 vilvtH~~~~~~~ad~ii~l~~g~i~~  627 (1490)
T TIGR01271       601 RILVTSKLEHLKKADKILLLHEGVCYF  627 (1490)
T ss_pred             EEEEeCChHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999875

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=3.7e-61  Score=565.22  Aligned_cols=456  Identities=19%  Similarity=0.218  Sum_probs=373.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHcCChhhhh--ccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 048556            4 WIVTGERQAARIRGLYLKTLLRQDIGFFD--KETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGW   81 (478)
Q Consensus         4 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (478)
                      ..+.+.++...++..+|+|+++++...+.  +. .+|+++|++++|++.+.+++.. +..++..++.+++++++++.+-.
T Consensus       309 ~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~-~~G~i~nl~s~Dv~~i~~~~~~-~~~l~~~Pl~li~~~~lL~~~lG  386 (1560)
T PTZ00243        309 SIRCGLQYRSALNALIFEKCFTISSKSLAQPDM-NTGRIINMMSTDVERINSFMQY-CMYLWSSPMVLLLSILLLSRLVG  386 (1560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCC-CHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence            45677888889999999999999998775  44 6899999999999999999855 45566677777776666666555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           82 LLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEG  161 (478)
Q Consensus        82 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~  161 (478)
                      +.+++.++++++++.+..++.+++.+..++.....+++.+.+.|.++|++.||.++||+.+.+++++..++..+...+..
T Consensus       387 ~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~  466 (1560)
T PTZ00243        387 WCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQ  466 (1560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777777777777788888999999999999999999999999999999999999999999999998777766655554


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 048556          162 LAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERK  241 (478)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~  241 (478)
                      ........+......+  +.++.+++|.+..+.+|++.+++++.++..+..|+..++..+..+.++.++++||.++++.+
T Consensus       467 ~~~~~~~~~~~~~p~l--~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~  544 (1560)
T PTZ00243        467 LARVATSFVNNATPTL--MIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECD  544 (1560)
T ss_pred             HHHHHHHHHHHHHHHH--HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            4444433332222222  22335677888899999999999999999999999999999999999999999999999754


Q ss_pred             CCcc----cC-C------------C------CC-------Cc---------------------------cCCCCccEEEE
Q 048556          242 PLID----AY-D------------S------NG-------VK---------------------------LDDIRGDIELK  264 (478)
Q Consensus       242 ~~~~----~~-~------------~------~~-------~~---------------------------~~~~~~~i~~~  264 (478)
                      +...    +. .            .      +.       ..                           .....+.+.++
T Consensus       545 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  624 (1560)
T PTZ00243        545 NATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVE  624 (1560)
T ss_pred             cccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccccc
Confidence            3100    00 0            0      00       00                           00011246777


Q ss_pred             eEEEECCCC-------------------------------------CCCcccccceeeecCCCEEEEEcCCCCChHHHHH
Q 048556          265 DIYFSYPSR-------------------------------------PGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVIS  307 (478)
Q Consensus       265 ~v~~~y~~~-------------------------------------~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~  307 (478)
                      |++|.++..                                     .++++|+|+||+|++||+++|+||||||||||++
T Consensus       625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~  704 (1560)
T PTZ00243        625 DTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQ  704 (1560)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHH
Confidence            877764310                                     1246899999999999999999999999999999


Q ss_pred             HHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCC
Q 048556          308 LIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQ  387 (478)
Q Consensus       308 ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~  387 (478)
                      +|+|+++|++|+|.+             +++|+|+||+|++|++|++|||.++.+ .+.++..++++.+++.++++.+|+
T Consensus       705 ~i~G~~~~~~G~i~~-------------~~~i~yv~Q~~~l~~~Tv~enI~~~~~-~~~~~~~~~~~~~~l~~~l~~l~~  770 (1560)
T PTZ00243        705 SLLSQFEISEGRVWA-------------ERSIAYVPQQAWIMNATVRGNILFFDE-EDAARLADAVRVSQLEADLAQLGG  770 (1560)
T ss_pred             HHhcCCCCCCcEEEE-------------CCeEEEEeCCCccCCCcHHHHHHcCCh-hhHHHHHHHHHHhhhHHHHHHhhc
Confidence            999999999999975             357999999999999999999999875 345667788888999999999999


Q ss_pred             CccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhcCCCeEEEEecCchhhhhcCE
Q 048556          388 GLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEA-LDKIMINRTTVIVAHRLSTVRNADL  466 (478)
Q Consensus       388 g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~-l~~~~~~~t~i~itH~~~~~~~~d~  466 (478)
                      |++|.+|++|.+||||||||++||||++.+|+++|||||||+||+.+++.+++. +....+++|+|+|||+++.++.||+
T Consensus       771 g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~  850 (1560)
T PTZ00243        771 GLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADY  850 (1560)
T ss_pred             cchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCE
Confidence            999999999999999999999999999999999999999999999998888765 4444468999999999999999999


Q ss_pred             EEEEeCCEEee
Q 048556          467 IAVIHQGKLVE  477 (478)
Q Consensus       467 i~vl~~G~i~~  477 (478)
                      |++|++|++++
T Consensus       851 ii~l~~G~i~~  861 (1560)
T PTZ00243        851 VVALGDGRVEF  861 (1560)
T ss_pred             EEEEECCEEEE
Confidence            99999999875

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=9.4e-54  Score=390.89  Aligned_cols=208  Identities=34%  Similarity=0.574  Sum_probs=179.8

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCC-CCHHHhhcce
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE-FQLKWIRGKI  339 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~-~~~~~~r~~i  339 (478)
                      |+++|++++|.+   ..+|+|||++|++||.++|+||||||||||+|.|+++.+|++|+|.+||.++.. .+...+|+++
T Consensus         3 i~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v   79 (240)
T COG1126           3 IEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV   79 (240)
T ss_pred             EEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence            799999999963   479999999999999999999999999999999999999999999999987743 3778899999


Q ss_pred             EEEecCCCCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556          340 GLVSQEPVLFTS-SIKDNINYGKD---GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL  415 (478)
Q Consensus       340 ~~v~Q~~~lf~~-ti~eNl~~~~~---~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall  415 (478)
                      |+|+|+..||+. |+.||+.++.-   ..+.+|-.+.     ..++++..  |+.......+.+|||||+||+||||||.
T Consensus        80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~-----A~~lL~~V--GL~~ka~~yP~qLSGGQqQRVAIARALa  152 (240)
T COG1126          80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREK-----ALELLEKV--GLADKADAYPAQLSGGQQQRVAIARALA  152 (240)
T ss_pred             CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHH-----HHHHHHHc--CchhhhhhCccccCcHHHHHHHHHHHHc
Confidence            999999999997 99999998741   1222221111     12334443  5666666677899999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEeeC
Q 048556          416 KDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVEK  478 (478)
Q Consensus       416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~  478 (478)
                      -+|+++++|||||||||+...++.+.++++. ++.|+++|||.+.+++. ||||+.||+|+++|+
T Consensus       153 M~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~  217 (240)
T COG1126         153 MDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEE  217 (240)
T ss_pred             CCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEe
Confidence            9999999999999999999999999999986 57899999999999998 899999999998863

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=100.00  E-value=5.9e-53  Score=415.05  Aligned_cols=216  Identities=30%  Similarity=0.515  Sum_probs=203.2

Q ss_pred             ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556          259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK  338 (478)
Q Consensus       259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~  338 (478)
                      +.|+++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|++||.++..++..++|+.
T Consensus         1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~   78 (275)
T cd03289           1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA   78 (275)
T ss_pred             CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence            358999999999642 3579999999999999999999999999999999999998 78999999999999999999999


Q ss_pred             eEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCC
Q 048556          339 IGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDP  418 (478)
Q Consensus       339 i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~  418 (478)
                      ++|+||++.+|++|+++|+....+ .++++++++++.+++.+++..+|.|+++.++++|.+||||||||++||||++++|
T Consensus        79 i~~v~q~~~lf~~tv~~nl~~~~~-~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p  157 (275)
T cd03289          79 FGVIPQKVFIFSGTFRKNLDPYGK-WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA  157 (275)
T ss_pred             EEEECCCcccchhhHHHHhhhccC-CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence            999999999999999999975433 4678999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          419 RILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       419 ~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      +++||||||++||+.+++.+.+.|++..+++|+|+|||+++++..||||++|++|++++
T Consensus       158 ~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~  216 (275)
T cd03289         158 KILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQ  216 (275)
T ss_pred             CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEee
Confidence            99999999999999999999999998777899999999999999999999999999986

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.3e-52  Score=401.86  Aligned_cols=211  Identities=37%  Similarity=0.585  Sum_probs=181.7

Q ss_pred             EEEEeEEEECCCC--CCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHH---Hh
Q 048556          261 IELKDIYFSYPSR--PGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLK---WI  335 (478)
Q Consensus       261 i~~~~v~~~y~~~--~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~---~~  335 (478)
                      |+++|||+.|+..  ...++|+|+||+|++||+.||+|+||||||||+|++.++..|++|+|.+||+++..++..   .+
T Consensus         2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~   81 (339)
T COG1135           2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL   81 (339)
T ss_pred             eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence            7899999999752  124699999999999999999999999999999999999999999999999998887754   45


Q ss_pred             hcceEEEecCCCCCc-ccHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048556          336 RGKIGLVSQEPVLFT-SSIKDNINYGKDGA--SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR  412 (478)
Q Consensus       336 r~~i~~v~Q~~~lf~-~ti~eNl~~~~~~~--~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lAR  412 (478)
                      |++||+++|++.|++ -|+++|+.|+-.-+  +.+++.  .+...+.+++     |+..+.+..+.+||||||||++|||
T Consensus        82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~--~RV~elLelV-----gL~dk~~~yP~qLSGGQKQRVaIAR  154 (339)
T COG1135          82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIK--QRVAELLELV-----GLSDKADRYPAQLSGGQKQRVAIAR  154 (339)
T ss_pred             HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHH--HHHHHHHHHc-----CChhhhccCchhcCcchhhHHHHHH
Confidence            788999999999998 59999999975322  233332  2222223332     6666777788999999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEeeC
Q 048556          413 AILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVEK  478 (478)
Q Consensus       413 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~  478 (478)
                      ||+.+|+||+.|||||||||+|.+.|.+.|+++.+  +-|+++|||.|+.++. |||+.||++|+++|+
T Consensus       155 ALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~  223 (339)
T COG1135         155 ALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEE  223 (339)
T ss_pred             HHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEe
Confidence            99999999999999999999999999999998863  6899999999999998 999999999999984

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=2e-51  Score=382.90  Aligned_cols=207  Identities=35%  Similarity=0.573  Sum_probs=180.1

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      |+|+|||++|.+   +.+++|+||+|++||+++++|||||||||++|+|.|+++|++|+|++||.++++++.-++|++||
T Consensus         2 I~~~nvsk~y~~---~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG   78 (309)
T COG1125           2 IEFENVSKRYGN---KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG   78 (309)
T ss_pred             ceeeeeehhcCC---ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence            789999999963   57999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCcc-cHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCccc--cccCCCCCCChHHHHHHHHHHHHc
Q 048556          341 LVSQEPVLFTS-SIKDNINYGKDGA--SIAEIMAAAELANAAKFIDSLPQGLDT--MVGEHGTQLSGGQKQRIAIARAIL  415 (478)
Q Consensus       341 ~v~Q~~~lf~~-ti~eNl~~~~~~~--~~~~~~~a~~~~~~~~~i~~lp~g~~t--~~~~~g~~LSgGq~Qrl~lARall  415 (478)
                      ||-|...||+. ||.|||.+-..-.  +.+++.+.     .++.+..+  |++.  .....+.+|||||+||+.+||||.
T Consensus        79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r-----~~ELl~lv--gL~p~~~~~RyP~eLSGGQQQRVGv~RALA  151 (309)
T COG1125          79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKR-----ADELLDLV--GLDPSEYADRYPHELSGGQQQRVGVARALA  151 (309)
T ss_pred             hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHH-----HHHHHHHh--CCCHHHHhhcCchhcCcchhhHHHHHHHHh
Confidence            99999999987 9999999754222  33333322     23333332  5553  455678999999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          416 KDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      .+|+++++||||+||||.++.++.+-+.++.+  ++|+|+|||+++++-+ +|||.+|++|++++
T Consensus       152 adP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q  216 (309)
T COG1125         152 ADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQ  216 (309)
T ss_pred             cCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEE
Confidence            99999999999999999999999999988753  7999999999997554 99999999999975

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-50  Score=407.22  Aligned_cols=217  Identities=30%  Similarity=0.491  Sum_probs=186.1

Q ss_pred             CccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC-----CCccEEEECCeecCC--C
Q 048556          258 RGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGVNLKE--F  330 (478)
Q Consensus       258 ~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~--~  330 (478)
                      .+.|+++|++++|++. .+++|+|+||+|++||++||+||||||||||+++|+|+++     |++|+|.+||+++..  .
T Consensus        78 ~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~  156 (329)
T PRK14257         78 ANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI  156 (329)
T ss_pred             CceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence            3579999999999642 3579999999999999999999999999999999999996     579999999999973  4


Q ss_pred             CHHHhhcceEEEecCCCCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 048556          331 QLKWIRGKIGLVSQEPVLFTSSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRI  408 (478)
Q Consensus       331 ~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl  408 (478)
                      +...+|+.++||||+|++|++|++||+.++..  ..++++.+++.....++.  ..+++++++.+++++.+||||||||+
T Consensus       157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~--~~L~~~l~~~~~~~~~~LSgGqkqRl  234 (329)
T PRK14257        157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKS--AALWDEVKDDLDKAGNALSGGQQQRL  234 (329)
T ss_pred             chHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHH--cCCcchhhhhhhCCcccCCHHHHHHH
Confidence            55678999999999999999999999998642  234444433221111111  12455677889999999999999999


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          409 AIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       409 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +||||++++|+|+||||||++||+.+.+.+.+.|+++.+++|+|+|||+++++.. ||||+||++|+++|
T Consensus       235 ~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e  304 (329)
T PRK14257        235 CIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEE  304 (329)
T ss_pred             HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999988878999999999999887 99999999999987

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=100.00  E-value=6.5e-50  Score=386.58  Aligned_cols=216  Identities=50%  Similarity=0.832  Sum_probs=199.5

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++|+++.|++. .+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus         1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~   79 (237)
T cd03252           1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG   79 (237)
T ss_pred             CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence            4789999999642 357999999999999999999999999999999999999999999999999998877778888999


Q ss_pred             EEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCE
Q 048556          341 LVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI  420 (478)
Q Consensus       341 ~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~i  420 (478)
                      |+||++.+|+.|++||+.++.+..+.+++.++++..++.+++..+|.|+++..+..+.+||||||||++||||++.+|++
T Consensus        80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l  159 (237)
T cd03252          80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI  159 (237)
T ss_pred             EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence            99999999999999999987654556667777788888999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       421 lilDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      +||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++
T Consensus       160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~  216 (237)
T cd03252         160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVE  216 (237)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999998877889999999999998899999999999875

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=8e-51  Score=370.09  Aligned_cols=209  Identities=34%  Similarity=0.518  Sum_probs=188.6

Q ss_pred             ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCc-----cEEEECCeecCC--CC
Q 048556          259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA-----GEVLIDGVNLKE--FQ  331 (478)
Q Consensus       259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~-----G~i~~~g~~~~~--~~  331 (478)
                      ..++++|+++.|.   ++.+|+|||++|++++++|++||||||||||+|.+.++.+..+     |+|.++|+++.+  +|
T Consensus         6 ~~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d   82 (253)
T COG1117           6 PAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD   82 (253)
T ss_pred             ceeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence            3589999999996   3579999999999999999999999999999999999998876     999999999976  57


Q ss_pred             HHHhhcceEEEecCCCCCcccHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556          332 LKWIRGKIGLVSQEPVLFTSSIKDNINYGKDG------ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK  405 (478)
Q Consensus       332 ~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~------~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~  405 (478)
                      .-++|++||+|+|.|.-|+.||+||+.+|..-      .-++-++.+++.+.+++-+..       .+.+.+..|||||+
T Consensus        83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ  155 (253)
T COG1117          83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ  155 (253)
T ss_pred             HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence            89999999999999999999999999998421      123457788999999887642       44567888999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |||||||||.-+|+||+||||||||||.+..+|.+.|.+++++-|+++|||+|.-+.. +|+...+-.|+++|
T Consensus       156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE  228 (253)
T COG1117         156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVE  228 (253)
T ss_pred             HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEE
Confidence            9999999999999999999999999999999999999999989999999999998766 89999999999997

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=100.00  E-value=1.2e-49  Score=380.49  Aligned_cols=216  Identities=37%  Similarity=0.645  Sum_probs=202.0

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      .++++|++++|++. .+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.+
T Consensus         2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i   80 (221)
T cd03244           2 DIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI   80 (221)
T ss_pred             cEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence            58999999999743 24799999999999999999999999999999999999999999999999999888888889999


Q ss_pred             EEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCC
Q 048556          340 GLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR  419 (478)
Q Consensus       340 ~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~  419 (478)
                      +|+||++.+|++|++||+.+..+ ...+++.++++..++.+++..+|.|+++.+++.+.+|||||+||++||||++.+|+
T Consensus        81 ~~~~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~  159 (221)
T cd03244          81 SIIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSK  159 (221)
T ss_pred             EEECCCCccccchHHHHhCcCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999987653 45678888899999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          420 ILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       420 ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      ++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++
T Consensus       160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~  217 (221)
T cd03244         160 ILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVE  217 (221)
T ss_pred             EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEe
Confidence            9999999999999999999999998876789999999999998899999999999875

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=100.00  E-value=1.5e-49  Score=382.03  Aligned_cols=216  Identities=48%  Similarity=0.838  Sum_probs=201.7

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      .++++|++++|++  .+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.+
T Consensus         2 ~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i   79 (229)
T cd03254           2 EIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI   79 (229)
T ss_pred             eEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence            5899999999963  24699999999999999999999999999999999999999999999999999888888888999


Q ss_pred             EEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCC
Q 048556          340 GLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR  419 (478)
Q Consensus       340 ~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~  419 (478)
                      +|+||++.+|++|++||+.++.+....+++.++++..++.++++.+|.|+++.++....+||||||||++|||||+.+|+
T Consensus        80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~  159 (229)
T cd03254          80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK  159 (229)
T ss_pred             EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999876556677788888889999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          420 ILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       420 ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      ++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.++.||++++|++|++++
T Consensus       160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~  217 (229)
T cd03254         160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIE  217 (229)
T ss_pred             EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEE
Confidence            9999999999999999999999998877889999999999988899999999999875

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=100.00  E-value=3e-49  Score=377.64  Aligned_cols=217  Identities=41%  Similarity=0.712  Sum_probs=199.7

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      .++++|+++.|++. .+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus         2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i   80 (220)
T cd03245           2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI   80 (220)
T ss_pred             eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence            58999999999642 24799999999999999999999999999999999999999999999999998877777778899


Q ss_pred             EEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCC
Q 048556          340 GLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR  419 (478)
Q Consensus       340 ~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~  419 (478)
                      +|++|++.+|..|++||+.++.+..+.+++.+.++..++.+.+..+|.|+++.+.+...+|||||+||++||||++.+|+
T Consensus        81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~  160 (220)
T cd03245          81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP  160 (220)
T ss_pred             EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence            99999999998899999998755445567778888889999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          420 ILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       420 ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      ++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.++.||++++|++|++++
T Consensus       161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~  218 (220)
T cd03245         161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVA  218 (220)
T ss_pred             EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEee
Confidence            9999999999999999999999998866689999999999887799999999999875

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=100.00  E-value=3.2e-49  Score=380.98  Aligned_cols=216  Identities=56%  Similarity=0.923  Sum_probs=199.9

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      |+++|++++|++. +.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++
T Consensus         1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~   79 (234)
T cd03251           1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG   79 (234)
T ss_pred             CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence            4789999999643 237999999999999999999999999999999999999999999999999988877778888999


Q ss_pred             EEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCE
Q 048556          341 LVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI  420 (478)
Q Consensus       341 ~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~i  420 (478)
                      |+||++.+|+.|++||+.++.+....+++.+.++..++.++++.+|.|+++.++....+||||||||++|||||+.+|++
T Consensus        80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l  159 (234)
T cd03251          80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI  159 (234)
T ss_pred             EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence            99999999999999999998665556677777888889999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       421 lilDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      +||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++
T Consensus       160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~  216 (234)
T cd03251         160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVE  216 (234)
T ss_pred             EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEee
Confidence            999999999999999999999998877889999999999998899999999999874

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=1.8e-49  Score=372.54  Aligned_cols=209  Identities=35%  Similarity=0.537  Sum_probs=173.9

Q ss_pred             EEEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHH----h
Q 048556          261 IELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW----I  335 (478)
Q Consensus       261 i~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~----~  335 (478)
                      ++++||++.|.... ..++|+++||+|++||+++|+||||||||||+++|.|+..|++|+|.++|.++..++.++    .
T Consensus         2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R   81 (226)
T COG1136           2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR   81 (226)
T ss_pred             cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence            57899999996431 247999999999999999999999999999999999999999999999999999888543    3


Q ss_pred             hcceEEEecCCCCCcc-cHHHHHhcCC--CCCCHHHHHHHHHHhcHHHHHHhCCCCcccccc-CCCCCCChHHHHHHHHH
Q 048556          336 RGKIGLVSQEPVLFTS-SIKDNINYGK--DGASIAEIMAAAELANAAKFIDSLPQGLDTMVG-EHGTQLSGGQKQRIAIA  411 (478)
Q Consensus       336 r~~i~~v~Q~~~lf~~-ti~eNl~~~~--~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~-~~g~~LSgGq~Qrl~lA  411 (478)
                      |++||||+|+..|++. |++||+.++.  +.....+..++     ..+..+.+  |+..... ..+.+|||||+||+|||
T Consensus        82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~-----~~~l~~~l--gl~~~~~~~~p~eLSGGqqQRVAIA  154 (226)
T COG1136          82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA-----AEELLEVL--GLEDRLLKKKPSELSGGQQQRVAIA  154 (226)
T ss_pred             HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHH-----HHHHHHhc--CChhhhccCCchhcCHHHHHHHHHH
Confidence            5679999999999987 9999999642  11121111111     12223332  5554444 66889999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhhcCEEEEEeCCEEe
Q 048556          412 RAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRNADLIAVIHQGKLV  476 (478)
Q Consensus       412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~vl~~G~i~  476 (478)
                      |||+.+|++++.||||++||.++.+.|++.+++..+  ++|+|+|||++.....|||++.|.||++.
T Consensus       155 RAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~  221 (226)
T COG1136         155 RALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE  221 (226)
T ss_pred             HHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence            999999999999999999999999999999998853  68999999999999999999999999864

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=100.00  E-value=3.1e-49  Score=379.13  Aligned_cols=219  Identities=50%  Similarity=0.832  Sum_probs=198.3

Q ss_pred             CCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhh
Q 048556          257 IRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIR  336 (478)
Q Consensus       257 ~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r  336 (478)
                      ..+.++++|++++|+++...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++
T Consensus         8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~   87 (226)
T cd03248           8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH   87 (226)
T ss_pred             cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence            34579999999999753224699999999999999999999999999999999999999999999999998877777778


Q ss_pred             cceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556          337 GKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK  416 (478)
Q Consensus       337 ~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~  416 (478)
                      +.++|++|++.+|+.|++||+.++......+++.+..+..++.++++.+|.|+++.+.+...+||||||||++||||+++
T Consensus        88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~  167 (226)
T cd03248          88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR  167 (226)
T ss_pred             hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence            89999999999999999999998765444555555566677889999999999999999999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEE
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKL  475 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i  475 (478)
                      +|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||+|++|++|++
T Consensus       168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i  226 (226)
T cd03248         168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI  226 (226)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence            99999999999999999999999999988767899999999999988999999999975

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=100.00  E-value=4.5e-49  Score=380.90  Aligned_cols=217  Identities=65%  Similarity=1.042  Sum_probs=199.3

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++|+++.|++.++.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus         1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   80 (238)
T cd03249           1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG   80 (238)
T ss_pred             CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence            47899999997432347999999999999999999999999999999999999999999999999988777777788899


Q ss_pred             EEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCE
Q 048556          341 LVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI  420 (478)
Q Consensus       341 ~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~i  420 (478)
                      |++|++.+|+.|++||+.++.+....+++.+.++..++.+++..+|.|+++..+....+|||||+||++||||++.+|++
T Consensus        81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l  160 (238)
T cd03249          81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI  160 (238)
T ss_pred             EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence            99999999989999999987655556667777788888999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       421 lilDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      +||||||++||+.+++.+.+.|++..+++|+|++||+++.+..||++++|++|++++
T Consensus       161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~  217 (238)
T cd03249         161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVE  217 (238)
T ss_pred             EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEE
Confidence            999999999999999999999988776789999999999998899999999999875

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=100.00  E-value=8.4e-49  Score=378.49  Aligned_cols=215  Identities=50%  Similarity=0.817  Sum_probs=200.4

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++|++++|++  .+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+++.++
T Consensus         1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~   78 (236)
T cd03253           1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG   78 (236)
T ss_pred             CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence            478999999963  246999999999999999999999999999999999999999999999999998888888888999


Q ss_pred             EEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCE
Q 048556          341 LVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI  420 (478)
Q Consensus       341 ~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~i  420 (478)
                      |++|++.+|++|++||+.++.+..+++++..+++..++.+++..+|.|+++.+.....+|||||+||++|||||+++|++
T Consensus        79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l  158 (236)
T cd03253          79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI  158 (236)
T ss_pred             EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence            99999999999999999988665666677778888899999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       421 lilDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      +||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++
T Consensus       159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~  215 (236)
T cd03253         159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVE  215 (236)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEe
Confidence            999999999999999999999998766789999999999998899999999999865

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=100.00  E-value=1.4e-48  Score=381.80  Aligned_cols=220  Identities=32%  Similarity=0.584  Sum_probs=202.7

Q ss_pred             CCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh
Q 048556          256 DIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI  335 (478)
Q Consensus       256 ~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~  335 (478)
                      ...+.++++|++++|++. ..++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+
T Consensus        15 ~~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~   93 (257)
T cd03288          15 GLGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL   93 (257)
T ss_pred             cCCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHH
Confidence            445789999999999742 2469999999999999999999999999999999999999999999999999998888888


Q ss_pred             hcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556          336 RGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL  415 (478)
Q Consensus       336 r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall  415 (478)
                      ++.++|++|++.+|++|++||+..... ...++++++++..++.+++..+|.|+++.+++.+.+|||||+||++||||++
T Consensus        94 ~~~i~~v~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~  172 (257)
T cd03288          94 RSRLSIILQDPILFSGSIRFNLDPECK-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV  172 (257)
T ss_pred             hhhEEEECCCCcccccHHHHhcCcCCC-CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence            999999999999999999999976432 2455677888888999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          416 KDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      ++|+++||||||++||+.+++.+.+.+++..+++|+|++||+++.+..||+|++|++|++++
T Consensus       173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~  234 (257)
T cd03288         173 RKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVE  234 (257)
T ss_pred             cCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999988777899999999999998899999999999975

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.1e-49  Score=370.55  Aligned_cols=201  Identities=34%  Similarity=0.527  Sum_probs=170.6

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      .+++++|+++|++   ..+|+|+||+|++||+++|+||||||||||+|+++|+.+|++|+|.++|.++..-     ...+
T Consensus         3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~   74 (248)
T COG1116           3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI   74 (248)
T ss_pred             eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence            4889999999964   5799999999999999999999999999999999999999999999999998443     5679


Q ss_pred             EEEecCCCCCcc-cHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556          340 GLVSQEPVLFTS-SIKDNINYGKDGA--SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK  416 (478)
Q Consensus       340 ~~v~Q~~~lf~~-ti~eNl~~~~~~~--~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~  416 (478)
                      +||+|++.||+= |++||+.++-...  +.+|-.+     .+.++++..  |+...-...+.+||||||||+||||||+.
T Consensus        75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~-----~a~~~L~~V--gL~~~~~~~P~qLSGGMrQRVaiARAL~~  147 (248)
T COG1116          75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARE-----RAKELLELV--GLAGFEDKYPHQLSGGMRQRVAIARALAT  147 (248)
T ss_pred             EEEeccCcccchhhHHhhheehhhccccchHhHHH-----HHHHHHHHc--CCcchhhcCccccChHHHHHHHHHHHHhc
Confidence            999999999984 9999999986532  1111111     123333333  55555556678999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeC--CEE
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQ--GKL  475 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~--G~i  475 (478)
                      +|++|+|||||+|||+.|+..+.+.+.++.+  ++|+++|||+.+++-. +|||+||.+  |+|
T Consensus       148 ~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i  211 (248)
T COG1116         148 RPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI  211 (248)
T ss_pred             CCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence            9999999999999999999999999988764  5899999999998666 999999999  555

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=3.2e-49  Score=377.92  Aligned_cols=204  Identities=33%  Similarity=0.531  Sum_probs=179.7

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      .++++|++|+|++   +++++|+||+|++||+++|+||||||||||+|.|+|+.+|.+|+|.+||+++.+++.+++.+.+
T Consensus         2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i   78 (258)
T COG1120           2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL   78 (258)
T ss_pred             eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence            3789999999963   5899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCC-CcccHHHHHhcCCCCC-------CHH---HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 048556          340 GLVSQEPVL-FTSSIKDNINYGKDGA-------SIA---EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRI  408 (478)
Q Consensus       340 ~~v~Q~~~l-f~~ti~eNl~~~~~~~-------~~~---~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl  408 (478)
                      +||||++.. |.-|++|-+.+|+-.+       +.+   .+.++++..++.++           ....-.+||||||||+
T Consensus        79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~l-----------a~r~~~~LSGGerQrv  147 (258)
T COG1120          79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHL-----------ADRPVDELSGGERQRV  147 (258)
T ss_pred             EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHH-----------hcCcccccChhHHHHH
Confidence            999999765 4559999999996221       222   35555666655544           4455689999999999


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhh-hhcCEEEEEeCCEEee
Q 048556          409 AIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTV-RNADLIAVIHQGKLVE  477 (478)
Q Consensus       409 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~-~~~d~i~vl~~G~i~~  477 (478)
                      .|||||+.+|++++||||||+||...+.++++.++++.+  ++|+|+|.|+++.+ +.||++++|++|+++.
T Consensus       148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a  219 (258)
T COG1120         148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVA  219 (258)
T ss_pred             HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEe
Confidence            999999999999999999999999999999999999863  68999999999875 5699999999999975

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=100.00  E-value=3.3e-49  Score=353.39  Aligned_cols=204  Identities=30%  Similarity=0.522  Sum_probs=183.1

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHH---Hhhc
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLK---WIRG  337 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~---~~r~  337 (478)
                      |+|+||+++|++.  +++|+|+||+|++||++.++||||||||||+|+|++...|+.|+|.++|.|+..+..+   .+|+
T Consensus         2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR   79 (223)
T COG2884           2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR   79 (223)
T ss_pred             eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence            7899999999863  6799999999999999999999999999999999999999999999999999877644   4799


Q ss_pred             ceEEEecCCCCCcc-cHHHHHhcCCC------CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 048556          338 KIGLVSQEPVLFTS-SIKDNINYGKD------GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAI  410 (478)
Q Consensus       338 ~i~~v~Q~~~lf~~-ti~eNl~~~~~------~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~l  410 (478)
                      +||+|+||..|... |++||++|.-.      ..-.+++.++++.+|+.+-...+|           .+|||||+||++|
T Consensus        80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaI  148 (223)
T COG2884          80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAI  148 (223)
T ss_pred             eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHH
Confidence            99999999999876 99999998642      112346777888888888777776           6899999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          411 ARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       411 ARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |||++.+|++||-||||.+|||++..+|++.+.++. .+.||++.||+.+.+.. --|++.+++|+++.
T Consensus       149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~  217 (223)
T COG2884         149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVR  217 (223)
T ss_pred             HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEe
Confidence            999999999999999999999999999999999986 48899999999999988 58999999999874

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=6.1e-46  Score=363.56  Aligned_cols=452  Identities=19%  Similarity=0.206  Sum_probs=338.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 048556            4 WIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLL   83 (478)
Q Consensus         4 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   83 (478)
                      .+..|+.+..++|.++.++++..|...+++. +++.++.++++|+..+. +-...++.+..+.+..+++.+++.++||++
T Consensus        72 ~t~~gq~~I~klr~~~~~kil~tplerier~-~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa~il~l~s~aYLayLSp~m  149 (546)
T COG4615          72 LTTLGQHFIYKLRSEFIKKILDTPLERIERL-GSARLLAGLTSDVRNIS-FAFSRLPELVQAIILTLGSAAYLAYLSPKM  149 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHh-cccchhhhhccccccee-ehHhhhHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            3567899999999999999999999999998 89999999999999998 444557778889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHH--HHHHHHHHHHHHHHHHHHH
Q 048556           84 TLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQA--VAKYNESLTKAYKSGVHEG  161 (478)
Q Consensus        84 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~--~~~~~~~~~~~~~~~~~~~  161 (478)
                      .++.++.+.+.++...+...+..+.....++..+++....+..+.|.++++...-..++  .+.+....+.+.+...+.+
T Consensus       150 f~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~~~~~n  229 (546)
T COG4615         150 FLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHIIRAN  229 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhhhhhhh
Confidence            98888888777777777777788888888889999999999999999999987532221  1222222222222111111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 048556          162 LAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGY-KGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIER  240 (478)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~l-s~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~  240 (478)
                      .+......+.+.+.....    ....|+..+-.. +......+......+..|+.++.+.++.+.++.+|.+++.++-..
T Consensus       230 ~f~~la~~~~ni~l~~lI----Glvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~  305 (546)
T COG4615         230 TFHLLAVNWSNIMLLGLI----GLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELA  305 (546)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcC
Confidence            111111122222222222    222233333222 222233333334455679999999999999999999999887554


Q ss_pred             CCCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEE
Q 048556          241 KPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV  320 (478)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i  320 (478)
                      ++....+..  .+.++. ..++++||.|+|++.  ..-+.+||++|++||+|.|+|.|||||||++++|.|+|+|++|+|
T Consensus       306 ~~~a~~~~~--q~~p~~-~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I  380 (546)
T COG4615         306 PYKADFPRP--QAFPDW-KTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEI  380 (546)
T ss_pred             CccccCCCC--CcCCcc-cceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCce
Confidence            332222211  112223 369999999999753  367899999999999999999999999999999999999999999


Q ss_pred             EECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCC-CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCC
Q 048556          321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDG-ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQ  399 (478)
Q Consensus       321 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~-~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~  399 (478)
                      ++||.+++.-+.++.|+-++-|+-|-+||+.++      +.+. ++++.+.+-++.-.+..... +.+|-=     ....
T Consensus       381 ~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~~kts-l~d~~f-----s~~k  448 (546)
T COG4615         381 LLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLELAHKTS-LNDGRF-----SNLK  448 (546)
T ss_pred             eECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHHhhhhc-ccCCcc-----cccc
Confidence            999999999999999999999999999998643      2222 56655554444333322211 111111     1367


Q ss_pred             CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          400 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKI-M-INRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       400 LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~-~-~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      ||.|||.|+|+--|++-+-||++|||=-+-=||.-++.+.+.+-.. + .+||++.|||+-.....|||++.|++|+++|
T Consensus       449 LStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e  528 (546)
T COG4615         449 LSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE  528 (546)
T ss_pred             cccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceee
Confidence            9999999999999999999999999999999999999999887544 2 5899999999999999999999999999987


Q ss_pred             C
Q 048556          478 K  478 (478)
Q Consensus       478 ~  478 (478)
                      .
T Consensus       529 ~  529 (546)
T COG4615         529 L  529 (546)
T ss_pred             c
Confidence            3

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.8e-48  Score=391.34  Aligned_cols=210  Identities=33%  Similarity=0.534  Sum_probs=177.8

Q ss_pred             EEEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHH---hh
Q 048556          261 IELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW---IR  336 (478)
Q Consensus       261 i~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~---~r  336 (478)
                      |+++|++++|++.+ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++.++   .|
T Consensus         2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r   81 (343)
T TIGR02314         2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR   81 (343)
T ss_pred             EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence            78999999996321 247999999999999999999999999999999999999999999999999998887654   47


Q ss_pred             cceEEEecCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556          337 GKIGLVSQEPVLFT-SSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA  413 (478)
Q Consensus       337 ~~i~~v~Q~~~lf~-~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa  413 (478)
                      +.|+|+||++.+|+ .|++||+.++..  ..+.++..+     .+.+.++.+  |+.......+.+||||||||++||||
T Consensus        82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~v~e~l~~v--gL~~~~~~~~~~LSgGqkQRV~IARA  154 (343)
T TIGR02314        82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKR-----KVTELLALV--GLGDKHDSYPSNLSGGQKQRVAIARA  154 (343)
T ss_pred             cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence            89999999999996 599999997532  122222211     112333333  55555566778999999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          414 ILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |+.+|++||||||||+||+.+++.+++.|+++.+  +.|+|+|||+++.++. ||+|++|++|++++
T Consensus       155 L~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~  221 (343)
T TIGR02314       155 LASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE  221 (343)
T ss_pred             HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999854  6899999999999866 99999999999986

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=4.6e-48  Score=383.39  Aligned_cols=202  Identities=33%  Similarity=0.567  Sum_probs=177.4

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      .|+++||++.|++.   .+++|+|++|++||+++|+||||||||||+|+|+|+.+|++|+|.|||.+++++++++  |.|
T Consensus         3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i   77 (338)
T COG3839           3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI   77 (338)
T ss_pred             EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence            58999999999632   2999999999999999999999999999999999999999999999999999999886  789


Q ss_pred             EEEecCCCCCcc-cHHHHHhcCCCCC--C----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048556          340 GLVSQEPVLFTS-SIKDNINYGKDGA--S----IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR  412 (478)
Q Consensus       340 ~~v~Q~~~lf~~-ti~eNl~~~~~~~--~----~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lAR  412 (478)
                      ++|+|+.-||+. |++|||.|+-...  .    ++++.++++..           +++..+...+.+||||||||+||||
T Consensus        78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L-----------~l~~lL~r~P~~LSGGQrQRVAlaR  146 (338)
T COG3839          78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLL-----------GLEHLLNRKPLQLSGGQRQRVALAR  146 (338)
T ss_pred             EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHc-----------CChhHHhcCcccCChhhHHHHHHHH
Confidence            999999999997 9999999986432  2    23444444444           4555555667899999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          413 AILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       413 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||+++|++++||||+|+||+..+.....-|+++.+  +.|+|+|||+..++.. +|||+||++|+|.+
T Consensus       147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q  214 (338)
T COG3839         147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQ  214 (338)
T ss_pred             HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeee
Confidence            99999999999999999999999999999988653  5799999999988776 99999999999865

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=100.00  E-value=5.4e-48  Score=343.02  Aligned_cols=199  Identities=34%  Similarity=0.561  Sum_probs=178.0

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      +.+++|.|.|...     =-.++++|++||++||+||||||||||+++++|+..|.+|+|.|||+|....++.+  +-++
T Consensus         2 l~L~~V~~~y~~~-----~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~--RPVS   74 (231)
T COG3840           2 LALDDVRFSYGHL-----PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE--RPVS   74 (231)
T ss_pred             ccccceEEeeCcc-----eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCccc--CChh
Confidence            5678999999632     12588899999999999999999999999999999999999999999998877664  6799


Q ss_pred             EEecCCCCCcc-cHHHHHhcCC-CCC-----CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556          341 LVSQEPVLFTS-SIKDNINYGK-DGA-----SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA  413 (478)
Q Consensus       341 ~v~Q~~~lf~~-ti~eNl~~~~-~~~-----~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa  413 (478)
                      +++|+..||.. ||++|+.+|. |.-     ..+++..++..+|+..+..++|           .+||||||||+||||+
T Consensus        75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARc  143 (231)
T COG3840          75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARC  143 (231)
T ss_pred             hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHH
Confidence            99999999987 9999999996 332     2356888899999999988887           5799999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          414 ILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |+|+-|||+||||||+|||.-+++....+.+++  ++.|+++|||+++.++. +|+++++++|||..
T Consensus       144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~  210 (231)
T COG3840         144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAA  210 (231)
T ss_pred             HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEe
Confidence            999999999999999999999999999998876  36799999999998877 99999999999975

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=100.00  E-value=6.6e-48  Score=367.38  Aligned_cols=207  Identities=28%  Similarity=0.495  Sum_probs=171.8

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHH---Hhhc
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLK---WIRG  337 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~---~~r~  337 (478)
                      ++++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..   .+|+
T Consensus         2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   80 (216)
T TIGR00960         2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR   80 (216)
T ss_pred             eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence            6899999999642 24699999999999999999999999999999999999999999999999998766543   4678


Q ss_pred             ceEEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 048556          338 KIGLVSQEPVLFTS-SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI  414 (478)
Q Consensus       338 ~i~~v~Q~~~lf~~-ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal  414 (478)
                      .++|+||++.+|.. |++||+.++...  ...++..     ..+.+.++.+  |+.........+||||||||++|||||
T Consensus        81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral  153 (216)
T TIGR00960        81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDAN-----ERVSAALEKV--GLEGKAHALPMQLSGGEQQRVAIARAI  153 (216)
T ss_pred             hceEEecCccccccccHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHH
Confidence            89999999999875 999999875211  1111111     1122333333  444445556679999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 048556          415 LKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKL  475 (478)
Q Consensus       415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i  475 (478)
                      +.+|+++||||||++||+.+++.+.+.|+++. +++|+|+|||+++.+.. ||++++|++|++
T Consensus       154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i  216 (216)
T TIGR00960       154 VHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL  216 (216)
T ss_pred             hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            99999999999999999999999999998875 46899999999999875 999999999985

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=100.00  E-value=1.8e-44  Score=378.30  Aligned_cols=450  Identities=17%  Similarity=0.158  Sum_probs=350.2

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhH------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556            3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGE------IIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIA   76 (478)
Q Consensus         3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~------l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~   76 (478)
                      +......+...-+...+.++-+.....|+...  .|.      .=+|+..|+..+.+.-......++.++++++...+++
T Consensus       109 L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~--~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iL  186 (604)
T COG4178         109 LNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQ--AGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGIL  186 (604)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHh--cccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566666677777777777775555443  332      3379999998888888888888888888887766666


Q ss_pred             HH---------------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHH
Q 048556           77 LS---------------KGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQ  141 (478)
Q Consensus        77 ~~---------------~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~  141 (478)
                      +.               +...+..++++.+++-.++..++++++-+..-+..+..+++...+...-++.+.|-.++-|+.
T Consensus       187 w~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~  266 (604)
T COG4178         187 WSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKV  266 (604)
T ss_pred             HHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHH
Confidence            52               233344445555666666777888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556          142 AVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCI  221 (478)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~  221 (478)
                      +.++.++......+.-.+..........+......+..++-+..++-....|.++.|+++.....+......+..+...+
T Consensus       267 Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~  346 (604)
T COG4178         267 ERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNY  346 (604)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99888877666555333333333333333333333344444455666678999999999998888888888999999999


Q ss_pred             HHHHHHHHHHHHHHHHHccCC--C-cc-cCCCCC-Ccc--CCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEE
Q 048556          222 SAFAAGQAAAYKLFEAIERKP--L-ID-AYDSNG-VKL--DDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAAL  294 (478)
Q Consensus       222 ~~~~~~~~a~~ri~~~l~~~~--~-~~-~~~~~~-~~~--~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~i  294 (478)
                      ..++.-.+...|+.++.+.-.  + +. ...... ...  ......|+++|++..-|+.  .+.++++||++++||.+-|
T Consensus       347 ~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~--~~ll~~l~~~v~~G~~llI  424 (604)
T COG4178         347 DAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG--QTLLSELNFEVRPGERLLI  424 (604)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC--CeeeccceeeeCCCCEEEE
Confidence            999999999999998874321  1 11 111000 000  1014679999999998753  4899999999999999999


Q ss_pred             EcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCC--CCHHHHHHH
Q 048556          295 VGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDG--ASIAEIMAA  372 (478)
Q Consensus       295 vG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~--~~~~~~~~a  372 (478)
                      .||||||||||+|+|+|+++..+|+|..-.           -..+-|+||.|++-.||+||-++++.+.  .+|+++.++
T Consensus       425 ~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~v  493 (604)
T COG4178         425 TGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAV  493 (604)
T ss_pred             ECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHH
Confidence            999999999999999999999999986520           2358999999999999999999998754  789999999


Q ss_pred             HHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 048556          373 AELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTV  452 (478)
Q Consensus       373 ~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i  452 (478)
                      +.++++.++++++.+ .+    .-...||+||+||+++||.++++|++++|||+|||||+++|..+.+.+++..++.|+|
T Consensus       494 L~~vgL~~L~~rl~~-~~----~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvI  568 (604)
T COG4178         494 LHKVGLGDLAERLDE-ED----RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVI  568 (604)
T ss_pred             HHHcCcHHHHHHHhc-cC----cHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEE
Confidence            999999999988642 22    2467899999999999999999999999999999999999999999999988999999


Q ss_pred             EEecCchhhhhcCEEEEEeC
Q 048556          453 IVAHRLSTVRNADLIAVIHQ  472 (478)
Q Consensus       453 ~itH~~~~~~~~d~i~vl~~  472 (478)
                      -|+||.......++.+-+++
T Consensus       569 SV~Hr~tl~~~h~~~l~l~~  588 (604)
T COG4178         569 SVGHRPTLWNFHSRQLELLD  588 (604)
T ss_pred             EeccchhhHHHHhhheeecc
Confidence            99999988777776666543

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=100.00  E-value=1.4e-47  Score=367.91  Aligned_cols=203  Identities=39%  Similarity=0.607  Sum_probs=172.8

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccC-----CCCccEEEECCeecCCCC--HH
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFY-----DPQAGEVLIDGVNLKEFQ--LK  333 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-----~~~~G~i~~~g~~~~~~~--~~  333 (478)
                      |+++|++++|++   +++|+|+||+|++||+++|+||||||||||+++|+|++     +|++|+|.++|.++.+.+  ..
T Consensus         1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~   77 (227)
T cd03260           1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL   77 (227)
T ss_pred             CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence            478999999963   47999999999999999999999999999999999999     999999999999987776  56


Q ss_pred             HhhcceEEEecCCCCCcccHHHHHhcCCCCC---C----HHHHHHHHHHhcHHHHHHhCCCCccccccCC--CCCCChHH
Q 048556          334 WIRGKIGLVSQEPVLFTSSIKDNINYGKDGA---S----IAEIMAAAELANAAKFIDSLPQGLDTMVGEH--GTQLSGGQ  404 (478)
Q Consensus       334 ~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~---~----~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~--g~~LSgGq  404 (478)
                      .+++.++|+||++.+|..|++||+.++....   .    ++++.++++..           |++......  +.+|||||
T Consensus        78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~~LSgG~  146 (227)
T cd03260          78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKA-----------ALWDEVKDRLHALGLSGGQ  146 (227)
T ss_pred             HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHc-----------CCChHHhccCCcccCCHHH
Confidence            6788999999999999779999998753211   1    11223333333           343333333  58999999


Q ss_pred             HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          405 KQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       405 ~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |||++|||||+++|+++||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++
T Consensus       147 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~  220 (227)
T cd03260         147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVE  220 (227)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEE
Confidence            99999999999999999999999999999999999999988655899999999998765 99999999999875

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.4e-47  Score=356.99  Aligned_cols=209  Identities=31%  Similarity=0.453  Sum_probs=173.9

Q ss_pred             cEEEEeEEEECCCCCC-CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCC-CHHHhhc
Q 048556          260 DIELKDIYFSYPSRPG-EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEF-QLKWIRG  337 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~-~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~-~~~~~r~  337 (478)
                      -++++|+++.|+.+.. .++++||||+|.+||++||+|+||||||||.++|+|+.+|++|+|.++|.+.... ..+++++
T Consensus         3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~   82 (252)
T COG1124           3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR   82 (252)
T ss_pred             eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence            3789999999975310 1499999999999999999999999999999999999999999999999877553 3446789


Q ss_pred             ceEEEecCCCC--Cc-ccHHHHHhcCCC----CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 048556          338 KIGLVSQEPVL--FT-SSIKDNINYGKD----GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAI  410 (478)
Q Consensus       338 ~i~~v~Q~~~l--f~-~ti~eNl~~~~~----~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~l  410 (478)
                      .|-+|+|||+-  =+ -|+++-|.=+-.    +....+++++++.+++.+          .++...+.+|||||+||+||
T Consensus        83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~----------~~l~R~P~eLSGGQ~QRiaI  152 (252)
T COG1124          83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPP----------SFLDRRPHELSGGQRQRIAI  152 (252)
T ss_pred             ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCH----------HHHhcCchhcChhHHHHHHH
Confidence            99999999973  23 277776653321    123345666666666543          23345567899999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCC--CeEEEEecCchhhhh-cCEEEEEeCCEEeeC
Q 048556          411 ARAILKDPRILLLDEATSALDAESERVVQEALDKIMIN--RTTVIVAHRLSTVRN-ADLIAVIHQGKLVEK  478 (478)
Q Consensus       411 ARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~--~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~  478 (478)
                      ||||.-+|++||||||||+||....+.|++.+.++.++  -|.|+|||++..+.+ ||||+||++|+++|.
T Consensus       153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~  223 (252)
T COG1124         153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEI  223 (252)
T ss_pred             HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEe
Confidence            99999999999999999999999999999999988764  499999999999998 999999999999973

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=3.7e-47  Score=366.92  Aligned_cols=207  Identities=34%  Similarity=0.553  Sum_probs=176.1

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH---HHhhc
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL---KWIRG  337 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~---~~~r~  337 (478)
                      ++++|+++.|++   +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.   ..+++
T Consensus         1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~   77 (235)
T cd03261           1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR   77 (235)
T ss_pred             CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence            478999999963   479999999999999999999999999999999999999999999999999887664   56788


Q ss_pred             ceEEEecCCCCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556          338 KIGLVSQEPVLFTS-SIKDNINYGKD---GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA  413 (478)
Q Consensus       338 ~i~~v~Q~~~lf~~-ti~eNl~~~~~---~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa  413 (478)
                      .++|+||++.+|++ |++||+.++..   ..+.++..+.     +.+.++.+  |+.........+||||||||++||||
T Consensus        78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~ia~a  150 (235)
T cd03261          78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREI-----VLEKLEAV--GLRGAEDLYPAELSGGMKKRVALARA  150 (235)
T ss_pred             ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHH-----HHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence            99999999999986 99999987632   1222222211     22334444  55555566778999999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          414 ILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |+.+|+++||||||++||+.+++.+.+.|+++.+  ++|+|++||+++.+.. ||++++|++|++++
T Consensus       151 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~  217 (235)
T cd03261         151 LALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVA  217 (235)
T ss_pred             HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEE
Confidence            9999999999999999999999999999998753  6899999999998876 99999999999875

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=100.00  E-value=1.8e-47  Score=364.76  Aligned_cols=208  Identities=36%  Similarity=0.514  Sum_probs=176.4

Q ss_pred             EEEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHH----h
Q 048556          261 IELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW----I  335 (478)
Q Consensus       261 i~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~----~  335 (478)
                      ++++|++++|++.. .+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...    .
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~   80 (218)
T cd03255           1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR   80 (218)
T ss_pred             CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence            47899999996421 147999999999999999999999999999999999999999999999999988766432    4


Q ss_pred             hcceEEEecCCCCCcc-cHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048556          336 RGKIGLVSQEPVLFTS-SIKDNINYGKDGA--SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR  412 (478)
Q Consensus       336 r~~i~~v~Q~~~lf~~-ti~eNl~~~~~~~--~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lAR  412 (478)
                      ++.++|+||++.+|.+ |++||+.++....  ..++.     ...+.++++.+  |++........+||||||||++|||
T Consensus        81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~  153 (218)
T cd03255          81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER-----RERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIAR  153 (218)
T ss_pred             hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHH-----HHHHHHHHHHc--CCchhhhcChhhcCHHHHHHHHHHH
Confidence            5789999999999987 9999998864211  11111     12234555555  6776677778899999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhhcCEEEEEeCCEE
Q 048556          413 AILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRNADLIAVIHQGKL  475 (478)
Q Consensus       413 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~vl~~G~i  475 (478)
                      ||+.+|+++||||||++||+.+++.+.+.|+++.+  ++|+|++||+++.+..||++++|++|++
T Consensus       154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i  218 (218)
T cd03255         154 ALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI  218 (218)
T ss_pred             HHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence            99999999999999999999999999999998754  6899999999999888999999999985

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2.4e-47  Score=353.92  Aligned_cols=208  Identities=34%  Similarity=0.555  Sum_probs=176.9

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHH---Hhh
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLK---WIR  336 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~---~~r  336 (478)
                      .|++++|+++|.+   +.+++|+||+|++||+++|+||||||||||+|++.|+.+|++|+|.++|.++.+++.+   ++|
T Consensus         8 ~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir   84 (263)
T COG1127           8 LIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR   84 (263)
T ss_pred             eEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence            5999999999963   5799999999999999999999999999999999999999999999999999988764   458


Q ss_pred             cceEEEecCCCCCcc-cHHHHHhcCCCCC---CHHHHHHHHHHhcHHHHHHhCCCCcccc-ccCCCCCCChHHHHHHHHH
Q 048556          337 GKIGLVSQEPVLFTS-SIKDNINYGKDGA---SIAEIMAAAELANAAKFIDSLPQGLDTM-VGEHGTQLSGGQKQRIAIA  411 (478)
Q Consensus       337 ~~i~~v~Q~~~lf~~-ti~eNl~~~~~~~---~~~~~~~a~~~~~~~~~i~~lp~g~~t~-~~~~g~~LSgGq~Qrl~lA  411 (478)
                      +++|+++|..-||+. |++||+.|.--.+   +++++.+. ...    .++..  |+... ....+.+||||+++|.|||
T Consensus        85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~l-v~~----KL~~V--GL~~~~~~~~PsELSGGM~KRvaLA  157 (263)
T COG1127          85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIREL-VLM----KLELV--GLRGAAADLYPSELSGGMRKRVALA  157 (263)
T ss_pred             hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHH-HHH----HHHhc--CCChhhhhhCchhhcchHHHHHHHH
Confidence            999999999999987 9999999864222   23333221 111    11111  44444 3345789999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          412 RAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||+.-||+++++|||||||||.+...|-+.|+++.+  +.|+++|||+++++.. |||++++.+|+|+.
T Consensus       158 RAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~  226 (263)
T COG1127         158 RAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIA  226 (263)
T ss_pred             HHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEE
Confidence            999999999999999999999999999999998864  6899999999998776 89999999999863

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.1e-47  Score=379.90  Aligned_cols=211  Identities=27%  Similarity=0.479  Sum_probs=180.4

Q ss_pred             cEEEEeEEEECCCCC--CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCC-------
Q 048556          260 DIELKDIYFSYPSRP--GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEF-------  330 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~--~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~-------  330 (478)
                      -|+++|++|+|++..  +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+.       
T Consensus        21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~  100 (320)
T PRK13631         21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI  100 (320)
T ss_pred             eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence            589999999996421  24699999999999999999999999999999999999999999999999998653       


Q ss_pred             ---------CHHHhhcceEEEecCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCC
Q 048556          331 ---------QLKWIRGKIGLVSQEP--VLFTSSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEH  396 (478)
Q Consensus       331 ---------~~~~~r~~i~~v~Q~~--~lf~~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~  396 (478)
                               +...+|+.++||+|+|  .+|+.|++||+.++..  ..+.++..+     ...++++.+  |++ ...++.
T Consensus       101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~  173 (320)
T PRK13631        101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK-----LAKFYLNKM--GLDDSYLERS  173 (320)
T ss_pred             ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH-----HHHHHHHHc--CCChhHhcCC
Confidence                     3456789999999998  6899999999988742  223333221     123455655  675 567888


Q ss_pred             CCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCE
Q 048556          397 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVR-NADLIAVIHQGK  474 (478)
Q Consensus       397 g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~  474 (478)
                      +.+||||||||++|||||+.+|+++||||||++||+.+++.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+
T Consensus       174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~  253 (320)
T PRK13631        174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGK  253 (320)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence            99999999999999999999999999999999999999999999998874 4789999999999774 599999999999


Q ss_pred             Eee
Q 048556          475 LVE  477 (478)
Q Consensus       475 i~~  477 (478)
                      +++
T Consensus       254 i~~  256 (320)
T PRK13631        254 ILK  256 (320)
T ss_pred             EEE
Confidence            975

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=100.00  E-value=3.2e-47  Score=361.85  Aligned_cols=205  Identities=37%  Similarity=0.610  Sum_probs=173.6

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++|+++.|++   +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.  .++.++
T Consensus         1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~   75 (213)
T cd03259           1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG   75 (213)
T ss_pred             CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence            478999999963   479999999999999999999999999999999999999999999999999876543  467899


Q ss_pred             EEecCCCCCcc-cHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556          341 LVSQEPVLFTS-SIKDNINYGKDGA--SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD  417 (478)
Q Consensus       341 ~v~Q~~~lf~~-ti~eNl~~~~~~~--~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~  417 (478)
                      |+||++.+|.+ |++||+.++....  ..++..     ..+.+.++.+  |++........+||||||||++|||||+.+
T Consensus        76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~~  148 (213)
T cd03259          76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIR-----ARVRELLELV--GLEGLLNRYPHELSGGQQQRVALARALARE  148 (213)
T ss_pred             EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence            99999998874 9999998753211  111111     1123444444  566666677789999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          418 PRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       418 ~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |+++||||||++||+.+++.+.+.|+++.  .++|+|++||+++.+.. ||++++|++|++++
T Consensus       149 p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~  211 (213)
T cd03259         149 PSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQ  211 (213)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence            99999999999999999999999998874  37899999999998765 99999999999976

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=100.00  E-value=8.9e-47  Score=356.52  Aligned_cols=200  Identities=35%  Similarity=0.544  Sum_probs=181.1

Q ss_pred             EEEEeEEEECCCCCC--CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556          261 IELKDIYFSYPSRPG--EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK  338 (478)
Q Consensus       261 i~~~~v~~~y~~~~~--~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~  338 (478)
                      ++++||+++|++..+  +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|             +
T Consensus         1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~   67 (204)
T cd03250           1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S   67 (204)
T ss_pred             CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence            478999999964311  3699999999999999999999999999999999999999999999998             6


Q ss_pred             eEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCC
Q 048556          339 IGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDP  418 (478)
Q Consensus       339 i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~  418 (478)
                      ++|+||++.+|++|++||+.++.. .++++..++++..++.+++..+|.|+++.+++.+..||||||||++||||++.+|
T Consensus        68 i~~~~q~~~l~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p  146 (204)
T cd03250          68 IAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA  146 (204)
T ss_pred             EEEEecCchhccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence            999999999999999999998753 3455677778888899999999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHH-HHHhc-CCCeEEEEecCchhhhhcCEEEEEeCCE
Q 048556          419 RILLLDEATSALDAESERVVQEA-LDKIM-INRTTVIVAHRLSTVRNADLIAVIHQGK  474 (478)
Q Consensus       419 ~ililDEpts~LD~~~~~~i~~~-l~~~~-~~~t~i~itH~~~~~~~~d~i~vl~~G~  474 (478)
                      +++||||||++||+.+.+.+.+. ++... +++|+|++||+++.+..||++++|++|+
T Consensus       147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~  204 (204)
T cd03250         147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR  204 (204)
T ss_pred             CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence            99999999999999999999884 55553 4689999999999988899999999985

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=100.00  E-value=5.1e-47  Score=366.08  Aligned_cols=212  Identities=28%  Similarity=0.497  Sum_probs=180.0

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh-hcce
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI-RGKI  339 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i  339 (478)
                      ++++|+++.|++   +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ ++.+
T Consensus         1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i   77 (236)
T cd03219           1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI   77 (236)
T ss_pred             CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence            468999999963   469999999999999999999999999999999999999999999999999988776554 5679


Q ss_pred             EEEecCCCCCcc-cHHHHHhcCCCCCCHHHH-------HHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 048556          340 GLVSQEPVLFTS-SIKDNINYGKDGASIAEI-------MAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIA  411 (478)
Q Consensus       340 ~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~-------~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lA  411 (478)
                      +|+||++.+|++ |++||+.++........+       ........+.++++.+  |++........+||||||||++||
T Consensus        78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la  155 (236)
T cd03219          78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIA  155 (236)
T ss_pred             EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHH
Confidence            999999999987 999999876432111000       0011122345566666  777777888899999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          412 RAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||++.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus       156 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~  223 (236)
T cd03219         156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIA  223 (236)
T ss_pred             HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence            99999999999999999999999999999998875 57899999999999866 99999999999875

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.6e-47  Score=360.66  Aligned_cols=199  Identities=30%  Similarity=0.497  Sum_probs=173.6

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      .|+++|++|+|.+  . ++|+||||++++|++++|+||||||||||+|+++|+.+|++|+|.++|.+..+...   +.+|
T Consensus         4 ~i~v~nl~v~y~~--~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I   77 (254)
T COG1121           4 MIEVENLTVSYGN--R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI   77 (254)
T ss_pred             EEEEeeeEEEECC--E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence            4899999999963  2 69999999999999999999999999999999999999999999999998766532   4689


Q ss_pred             EEEecCC---CCCcccHHHHHhcCCCCC----------CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHH
Q 048556          340 GLVSQEP---VLFTSSIKDNINYGKDGA----------SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQ  406 (478)
Q Consensus       340 ~~v~Q~~---~lf~~ti~eNl~~~~~~~----------~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Q  406 (478)
                      |||||..   +-|+-||+|-+.+|+...          +.+++.+|++.+++.++..           ..-.+|||||+|
T Consensus        78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~-----------r~i~~LSGGQ~Q  146 (254)
T COG1121          78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD-----------RQIGELSGGQKQ  146 (254)
T ss_pred             EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhC-----------CcccccCcHHHH
Confidence            9999955   458899999999985322          1367888888888776542           345689999999


Q ss_pred             HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 048556          407 RIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI-NRTTVIVAHRLSTVRN-ADLIAVIHQGKL  475 (478)
Q Consensus       407 rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-~d~i~vl~~G~i  475 (478)
                      |+.|||||+.+|++|+|||||+|+|+.++..|.+.|+++++ ++||++|||+++.+.. +|+|+.|+..-+
T Consensus       147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~~  217 (254)
T COG1121         147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLI  217 (254)
T ss_pred             HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCeeE
Confidence            99999999999999999999999999999999999999874 7999999999998766 999999976543

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=100.00  E-value=6.6e-47  Score=361.67  Aligned_cols=209  Identities=29%  Similarity=0.528  Sum_probs=176.3

Q ss_pred             EEEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHH---hh
Q 048556          261 IELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW---IR  336 (478)
Q Consensus       261 i~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~---~r  336 (478)
                      ++++||+++|++.. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++...   +|
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (221)
T TIGR02211         2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR   81 (221)
T ss_pred             EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence            68999999996421 146999999999999999999999999999999999999999999999999998776544   23


Q ss_pred             -cceEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048556          337 -GKIGLVSQEPVLFTS-SIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR  412 (478)
Q Consensus       337 -~~i~~v~Q~~~lf~~-ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lAR  412 (478)
                       +.++|+||++.+|+. |++||+.++..  ....++..     ..+.++++.+  |++.........||||||||++|||
T Consensus        82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lar  154 (221)
T TIGR02211        82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAK-----ERAYEMLEKV--GLEHRINHRPSELSGGERQRVAIAR  154 (221)
T ss_pred             HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence             679999999999965 99999987421  11111111     1123455554  6766677778899999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhhcCEEEEEeCCEEe
Q 048556          413 AILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRNADLIAVIHQGKLV  476 (478)
Q Consensus       413 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~vl~~G~i~  476 (478)
                      |++++|+++||||||++||+.+++.+.+.|+++.  .++|+|++||+++.+..+|++++|++|+++
T Consensus       155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~  220 (221)
T TIGR02211       155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF  220 (221)
T ss_pred             HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence            9999999999999999999999999999998875  368999999999999889999999999986

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=3.5e-47  Score=359.53  Aligned_cols=199  Identities=29%  Similarity=0.498  Sum_probs=169.3

Q ss_pred             EEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEE
Q 048556          262 ELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGL  341 (478)
Q Consensus       262 ~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~  341 (478)
                      +++|++++|++.  +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..   ..+++.++|
T Consensus         1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~   75 (205)
T cd03226           1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY   75 (205)
T ss_pred             CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence            368999999631  479999999999999999999999999999999999999999999999998754   456778999


Q ss_pred             EecCC--CCCcccHHHHHhcCCCCCC--HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556          342 VSQEP--VLFTSSIKDNINYGKDGAS--IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD  417 (478)
Q Consensus       342 v~Q~~--~lf~~ti~eNl~~~~~~~~--~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~  417 (478)
                      +||++  .+|..|++||+.++.+...  .+++.++++..           |++.........||||||||++|||||+.+
T Consensus        76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~laral~~~  144 (205)
T cd03226          76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDL-----------DLYALKERHPLSLSGGQKQRLAIAAALLSG  144 (205)
T ss_pred             EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHc-----------CCchhcCCCchhCCHHHHHHHHHHHHHHhC
Confidence            99997  4677899999998653322  12334444443           444445556678999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEe
Q 048556          418 PRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLV  476 (478)
Q Consensus       418 ~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~  476 (478)
                      |+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|+++
T Consensus       145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv  205 (205)
T cd03226         145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV  205 (205)
T ss_pred             CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence            99999999999999999999999998874 57899999999999875 9999999999985

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=100.00  E-value=2.5e-46  Score=354.25  Aligned_cols=199  Identities=34%  Similarity=0.609  Sum_probs=177.4

Q ss_pred             ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556          259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK  338 (478)
Q Consensus       259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~  338 (478)
                      +.++++|++++|++. ..++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+..++|+.
T Consensus         5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~   83 (207)
T cd03369           5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS   83 (207)
T ss_pred             CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence            469999999999742 2479999999999999999999999999999999999999999999999999988888888899


Q ss_pred             eEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCC
Q 048556          339 IGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDP  418 (478)
Q Consensus       339 i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~  418 (478)
                      ++|+||++.+|++|++||+.+..+ .+.+++.++++                  ++.....|||||+||++||||++.+|
T Consensus        84 i~~v~q~~~~~~~tv~~~l~~~~~-~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p  144 (207)
T cd03369          84 LTIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRP  144 (207)
T ss_pred             EEEEecCCcccCccHHHHhcccCC-CCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCC
Confidence            999999999999999999987543 33333333222                  34568899999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          419 RILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       419 ~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      +++||||||++||+.+++.+.+.|++..+++|+|++||+++.+..||++++|++|++++
T Consensus       145 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~  203 (207)
T cd03369         145 RVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKE  203 (207)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEe
Confidence            99999999999999999999999998877889999999999988899999999999875

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.4e-47  Score=361.06  Aligned_cols=209  Identities=38%  Similarity=0.635  Sum_probs=181.6

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecC-CCCHHHhhcc
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLK-EFQLKWIRGK  338 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~-~~~~~~~r~~  338 (478)
                      -++++|++|+|+++  .++|+|+||+|++||.++|+||||||||||+++++|+++|++|.|.++|.++. +.+..++|++
T Consensus         3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~   80 (235)
T COG1122           3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK   80 (235)
T ss_pred             eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence            37899999999854  58999999999999999999999999999999999999999999999999988 4788899999


Q ss_pred             eEEEecCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 048556          339 IGLVSQEP--VLFTSSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI  414 (478)
Q Consensus       339 i~~v~Q~~--~lf~~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal  414 (478)
                      +|||+|+|  .+|..||.|.+.||..+  .+.+++.+..+     +.+...  |+.........+||||||||+|||.+|
T Consensus        81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~-----~~l~~v--gl~~~~~r~p~~LSGGqkqRvaIA~vL  153 (235)
T COG1122          81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVA-----EALELV--GLEELLDRPPFNLSGGQKQRVAIAGVL  153 (235)
T ss_pred             eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHH-----HHHHHc--CchhhccCCccccCCcceeeHHhhHHH
Confidence            99999999  68999999999999754  33444333221     122222  444455667799999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          415 LKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ..+|+++|||||||+||+...+.+++.++++.+  ++|+|++||+++.+.. |||+++|++|+++.
T Consensus       154 a~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~  219 (235)
T COG1122         154 AMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILA  219 (235)
T ss_pred             HcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEee
Confidence            999999999999999999999999999999874  4799999999999877 99999999999864

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.8e-46  Score=361.68  Aligned_cols=211  Identities=27%  Similarity=0.471  Sum_probs=178.6

Q ss_pred             cEEEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHH---h
Q 048556          260 DIELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW---I  335 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~---~  335 (478)
                      -++++||+|.|+++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+...   +
T Consensus         5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~   84 (233)
T PRK11629          5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL   84 (233)
T ss_pred             eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence            389999999997421 147999999999999999999999999999999999999999999999999998877643   3


Q ss_pred             h-cceEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 048556          336 R-GKIGLVSQEPVLFTS-SIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIA  411 (478)
Q Consensus       336 r-~~i~~v~Q~~~lf~~-ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lA  411 (478)
                      + +.++|+||++.+|+. |++||+.++..  ....++..     ..+.+.++.+  |++........+||||||||++||
T Consensus        85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrl~la  157 (233)
T PRK11629         85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEIN-----SRALEMLAAV--GLEHRANHRPSELSGGERQRVAIA  157 (233)
T ss_pred             HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHH
Confidence            3 679999999999976 99999987421  11222211     1123444544  666667777899999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          412 RAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      ||++.+|+++||||||++||+.+++.+.+.|+++.  +++|+|++||+++.+..+|++++|++|++++
T Consensus       158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~  225 (233)
T PRK11629        158 RALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTA  225 (233)
T ss_pred             HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEE
Confidence            99999999999999999999999999999999874  3689999999999999999999999999975

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=100.00  E-value=1.2e-46  Score=359.09  Aligned_cols=209  Identities=26%  Similarity=0.505  Sum_probs=176.9

Q ss_pred             EEEEeEEEECCCCCC-CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          261 IELKDIYFSYPSRPG-EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       261 i~~~~v~~~y~~~~~-~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      ++++|++++|++... .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...++++.+
T Consensus         2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i   80 (218)
T cd03266           2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL   80 (218)
T ss_pred             eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence            689999999974211 169999999999999999999999999999999999999999999999999875 345678899


Q ss_pred             EEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556          340 GLVSQEPVLFTS-SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK  416 (478)
Q Consensus       340 ~~v~Q~~~lf~~-ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~  416 (478)
                      +|+||++.+|++ |++||+.+....  .+.++..+     .+.++++.+  |++..+.....+||||||||++||||++.
T Consensus        81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~  153 (218)
T cd03266          81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTA-----RLEELADRL--GMEELLDRRVGGFSTGMRQKVAIARALVH  153 (218)
T ss_pred             EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHHhhhhhhcCHHHHHHHHHHHHHhc
Confidence            999999999986 999999864321  12222111     123444544  66666677889999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus       154 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~  216 (218)
T cd03266         154 DPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY  216 (218)
T ss_pred             CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEee
Confidence            999999999999999999999999998875 47899999999998765 99999999999976

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-46  Score=365.85  Aligned_cols=208  Identities=32%  Similarity=0.492  Sum_probs=177.4

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC---CCccEEEECCeecCCCCHHHhh
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD---PQAGEVLIDGVNLKEFQLKWIR  336 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~r  336 (478)
                      .|+++|+++.|++   +++|+|+||++++||+++|+||||||||||+++|+|+++   |++|+|.++|+++.+.+...+|
T Consensus         2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~   78 (246)
T PRK14269          2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR   78 (246)
T ss_pred             ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence            3789999999963   479999999999999999999999999999999999984   6899999999999888877888


Q ss_pred             cceEEEecCCCCCcccHHHHHhcCCCCC--------CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 048556          337 GKIGLVSQEPVLFTSSIKDNINYGKDGA--------SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRI  408 (478)
Q Consensus       337 ~~i~~v~Q~~~lf~~ti~eNl~~~~~~~--------~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl  408 (478)
                      +.++|+||++.+|+.|++||+.++....        ..+++.++++..++.+++       .+...+.+.+||||||||+
T Consensus        79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~qrv  151 (246)
T PRK14269         79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEV-------KDKLKQNALALSGGQQQRL  151 (246)
T ss_pred             hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhh-------hHHhcCCcccCCHHHHHHH
Confidence            8999999999999999999998753110        111233333433333222       2345667889999999999


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          409 AIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       409 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +||||++++|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus       152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~  221 (246)
T PRK14269        152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIE  221 (246)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEE
Confidence            9999999999999999999999999999999999988778899999999998765 99999999999975

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=2.8e-47  Score=379.78  Aligned_cols=202  Identities=33%  Similarity=0.572  Sum_probs=177.7

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      .++++||+++|.   +..+++|+||+|++||+++++|||||||||++++|+|+.+|++|+|.+||+++.+++++  +|.|
T Consensus         5 ~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i   79 (352)
T COG3842           5 ALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI   79 (352)
T ss_pred             eEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence            589999999996   35799999999999999999999999999999999999999999999999999999877  5789


Q ss_pred             EEEecCCCCCcc-cHHHHHhcCCC---CCCHH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 048556          340 GLVSQEPVLFTS-SIKDNINYGKD---GASIA----EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIA  411 (478)
Q Consensus       340 ~~v~Q~~~lf~~-ti~eNl~~~~~---~~~~~----~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lA  411 (478)
                      ++|+|+--||+. ||+||+.||-.   ...++    ++.++++.+++.++-           ..++.+|||||+||+|||
T Consensus        80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~-----------~R~p~qLSGGQqQRVALA  148 (352)
T COG3842          80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFA-----------DRKPHQLSGGQQQRVALA  148 (352)
T ss_pred             ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhh-----------hhChhhhChHHHHHHHHH
Confidence            999999999997 99999999864   11222    455566666555544           455689999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          412 RAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |||..+|++|+||||.|+||.+-+.....-++++.  .+.|.|+|||+-++.-. +|||+||++|+|.+
T Consensus       149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q  217 (352)
T COG3842         149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQ  217 (352)
T ss_pred             HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceee
Confidence            99999999999999999999999999999888764  37899999999887554 99999999999864

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.1e-47  Score=351.48  Aligned_cols=208  Identities=33%  Similarity=0.566  Sum_probs=179.9

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC---HHHhh
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ---LKWIR  336 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~---~~~~r  336 (478)
                      .|+++||+.+||+  ++++|+||||+|++||.|+|+||||||||||+|.|.|+.+|++|+|.+||.++..+.   ...+|
T Consensus         3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r   80 (258)
T COG3638           3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR   80 (258)
T ss_pred             eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence            4899999999985  468999999999999999999999999999999999999999999999999998877   45568


Q ss_pred             cceEEEecCCCCCcc-cHHHHHhcCCCCC-----------CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHH
Q 048556          337 GKIGLVSQEPVLFTS-SIKDNINYGKDGA-----------SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQ  404 (478)
Q Consensus       337 ~~i~~v~Q~~~lf~~-ti~eNl~~~~~~~-----------~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq  404 (478)
                      +++||++|++.|-+. |+.+|+..|.-.+           +.++-..|      .+.++.+  |+-.....+..+|||||
T Consensus        81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~A------l~aLerv--gi~~~A~qra~~LSGGQ  152 (258)
T COG3638          81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQA------LDALERV--GILDKAYQRASTLSGGQ  152 (258)
T ss_pred             HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHH------HHHHHHc--CcHHHHHHHhccCCcch
Confidence            889999999999986 9999999886432           22322222      2223333  55555557789999999


Q ss_pred             HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          405 KQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       405 ~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +||++|||||+.+|++++-|||+++|||.+.+++++.|++..  .+.|+|+.-|.++.+++ ||||+-|++|+|+.
T Consensus       153 QQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivf  228 (258)
T COG3638         153 QQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVF  228 (258)
T ss_pred             hHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEE
Confidence            999999999999999999999999999999999999999885  46899999999999876 99999999999974

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.1e-46  Score=370.55  Aligned_cols=211  Identities=31%  Similarity=0.525  Sum_probs=177.8

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      -++++|++++|++....++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i   83 (279)
T PRK13650          4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI   83 (279)
T ss_pred             eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence            38999999999642224699999999999999999999999999999999999999999999999999887877888999


Q ss_pred             EEEecCCC--CCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556          340 GLVSQEPV--LFTSSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL  415 (478)
Q Consensus       340 ~~v~Q~~~--lf~~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall  415 (478)
                      +|++|++.  ++..|++||+.++...  .+.++..+.     +.+.++.+  |++........+|||||+||++|||||+
T Consensus        84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~LSgGq~qrv~lAral~  156 (279)
T PRK13650         84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKER-----VNEALELV--GMQDFKEREPARLSGGQKQRVAIAGAVA  156 (279)
T ss_pred             eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHH-----HHHHHHHC--CCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence            99999983  4567999999986422  222222111     12233333  4555555667899999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          416 KDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      .+|++|||||||++||+.+++.+.+.|+++.+  ++|+|++||+++.+..||+|++|++|++++
T Consensus       157 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~  220 (279)
T PRK13650        157 MRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVES  220 (279)
T ss_pred             cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999998753  789999999999988899999999999874

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=100.00  E-value=1.5e-46  Score=359.36  Aligned_cols=208  Identities=28%  Similarity=0.473  Sum_probs=174.6

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh-hcce
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI-RGKI  339 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i  339 (478)
                      |+++||+++|++   .++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+..+. ++.+
T Consensus         1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i   77 (222)
T cd03224           1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI   77 (222)
T ss_pred             CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence            478999999963   479999999999999999999999999999999999999999999999999988776554 6779


Q ss_pred             EEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCC
Q 048556          340 GLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDP  418 (478)
Q Consensus       340 ~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~  418 (478)
                      +|+||++.+|++ |++||+.++.......+..+     .+.+.++.++ +++........+||||||||++||||++++|
T Consensus        78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~-----~~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p  151 (222)
T cd03224          78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKA-----RLERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRP  151 (222)
T ss_pred             EEeccccccCCCCcHHHHHHHHhhhcCchhHHH-----HHHHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence            999999999987 99999998653222111111     1122222221 2344556677899999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          419 RILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       419 ~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++
T Consensus       152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  212 (222)
T cd03224         152 KLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVL  212 (222)
T ss_pred             CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEE
Confidence            9999999999999999999999998875 46899999999998766 99999999999875

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=100.00  E-value=1.1e-46  Score=358.31  Aligned_cols=201  Identities=30%  Similarity=0.498  Sum_probs=170.2

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHH---Hhhc
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLK---WIRG  337 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~---~~r~  337 (478)
                      ++++|+++.|++  ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++..   .+++
T Consensus         2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   79 (214)
T TIGR02673         2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR   79 (214)
T ss_pred             EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence            689999999952  24799999999999999999999999999999999999999999999999999876543   4678


Q ss_pred             ceEEEecCCCCCc-ccHHHHHhcCCCC--CC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 048556          338 KIGLVSQEPVLFT-SSIKDNINYGKDG--AS----IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAI  410 (478)
Q Consensus       338 ~i~~v~Q~~~lf~-~ti~eNl~~~~~~--~~----~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~l  410 (478)
                      .++|+||++.+|. .|++||+.++...  ..    .+++.++++..+           +.........+|||||+||++|
T Consensus        80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrl~l  148 (214)
T TIGR02673        80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVG-----------LEHKADAFPEQLSGGEQQRVAI  148 (214)
T ss_pred             heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------ChhhhhCChhhCCHHHHHHHHH
Confidence            8999999999997 5999999875211  11    123333333333           3333444567899999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCE
Q 048556          411 ARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGK  474 (478)
Q Consensus       411 ARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~  474 (478)
                      ||||+++|+++||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||++++|++|+
T Consensus       149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~  214 (214)
T TIGR02673       149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR  214 (214)
T ss_pred             HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence            999999999999999999999999999999999875 47899999999999886 99999999985

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=100.00  E-value=1.9e-46  Score=363.06  Aligned_cols=213  Identities=34%  Similarity=0.578  Sum_probs=176.8

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC---HHHhhc
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ---LKWIRG  337 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~---~~~~r~  337 (478)
                      ++++|++++|++  ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+   ...+++
T Consensus         1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   78 (241)
T cd03256           1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR   78 (241)
T ss_pred             CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence            468999999963  147999999999999999999999999999999999999999999999999988776   456788


Q ss_pred             ceEEEecCCCCCc-ccHHHHHhcCCCCCC--HHHH---HHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 048556          338 KIGLVSQEPVLFT-SSIKDNINYGKDGAS--IAEI---MAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIA  411 (478)
Q Consensus       338 ~i~~v~Q~~~lf~-~ti~eNl~~~~~~~~--~~~~---~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lA  411 (478)
                      .++|+||++.+|. .|++||+.++.....  ...+   ........+.+.++.+  |+.......+.+||||||||++||
T Consensus        79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la  156 (241)
T cd03256          79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERV--GLLDKAYQRADQLSGGQQQRVAIA  156 (241)
T ss_pred             ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHc--CChhhhCCCcccCCHHHHHHHHHH
Confidence            9999999999887 599999987542110  0000   0000111223445544  566666778899999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          412 RAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||++.+|+++||||||++||+.+++.+.+.|+++.  .++|+|++||+++.+.. ||++++|++|++++
T Consensus       157 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~  225 (241)
T cd03256         157 RALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVF  225 (241)
T ss_pred             HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence            99999999999999999999999999999999875  37899999999999884 99999999999875

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=100.00  E-value=1.9e-46  Score=355.98  Aligned_cols=201  Identities=28%  Similarity=0.515  Sum_probs=172.5

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      |+++|++|.|++   +++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ..+++.++
T Consensus         1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~   75 (211)
T cd03264           1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG   75 (211)
T ss_pred             CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence            478999999963   47999999999999 99999999999999999999999999999999999988766 66788999


Q ss_pred             EEecCCCCCcc-cHHHHHhcCCC--CCCH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556          341 LVSQEPVLFTS-SIKDNINYGKD--GASI----AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA  413 (478)
Q Consensus       341 ~v~Q~~~lf~~-ti~eNl~~~~~--~~~~----~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa  413 (478)
                      |+||++.+|.+ |++||+.+...  ..+.    +++.++++..           |++........+||||||||++||||
T Consensus        76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~la~a  144 (211)
T cd03264          76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELV-----------NLGDRAKKKIGSLSGGMRRRVGIAQA  144 (211)
T ss_pred             EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-----------CCHHHHhCchhhCCHHHHHHHHHHHH
Confidence            99999999986 99999986421  1111    2233333333           33333445567899999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          414 ILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ++.+|+++||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++
T Consensus       145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~  209 (211)
T cd03264         145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVF  209 (211)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEe
Confidence            99999999999999999999999999999988767999999999999865 99999999999976

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=1.5e-46  Score=356.64  Aligned_cols=205  Identities=39%  Similarity=0.649  Sum_probs=173.5

Q ss_pred             EEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEE
Q 048556          262 ELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGL  341 (478)
Q Consensus       262 ~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~  341 (478)
                      +++|++++|++. .+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus         1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   79 (211)
T cd03225           1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL   79 (211)
T ss_pred             CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence            368999999642 2479999999999999999999999999999999999999999999999999988777778889999


Q ss_pred             EecCCC--CCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556          342 VSQEPV--LFTSSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD  417 (478)
Q Consensus       342 v~Q~~~--lf~~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~  417 (478)
                      +||++.  ++..|++||+.++...  .+..+..+     .+.++++.+  |++..+.....+||||||||++|||||+++
T Consensus        80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~  152 (211)
T cd03225          80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEE-----RVEEALELV--GLEGLRDRSPFTLSGGQKQRVAIAGVLAMD  152 (211)
T ss_pred             EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence            999984  5677999999875321  12222111     123344444  555556677789999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchhhhh-cCEEEEEeCCE
Q 048556          418 PRILLLDEATSALDAESERVVQEALDKIMI-NRTTVIVAHRLSTVRN-ADLIAVIHQGK  474 (478)
Q Consensus       418 ~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-~d~i~vl~~G~  474 (478)
                      |+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|+
T Consensus       153 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~  211 (211)
T cd03225         153 PDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK  211 (211)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence            999999999999999999999999988753 6899999999999887 99999999985

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.1e-46  Score=362.12  Aligned_cols=213  Identities=30%  Similarity=0.545  Sum_probs=176.1

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH---HHhhc
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL---KWIRG  337 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~---~~~r~  337 (478)
                      ++++|++++|++  ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++..++.   ..+++
T Consensus         2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   79 (243)
T TIGR02315         2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR   79 (243)
T ss_pred             eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence            679999999962  2469999999999999999999999999999999999999999999999999877654   34678


Q ss_pred             ceEEEecCCCCCcc-cHHHHHhcCCCCCC--HHHH---HHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 048556          338 KIGLVSQEPVLFTS-SIKDNINYGKDGAS--IAEI---MAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIA  411 (478)
Q Consensus       338 ~i~~v~Q~~~lf~~-ti~eNl~~~~~~~~--~~~~---~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lA  411 (478)
                      .++|+||++.+|+. |++||+.++.....  ...+   ........+.++++.+  |++........+||||||||++||
T Consensus        80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la  157 (243)
T TIGR02315        80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV--GLADKAYQRADQLSGGQQQRVAIA  157 (243)
T ss_pred             heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHH
Confidence            89999999998874 99999987642110  0000   0000111233445554  666666777899999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          412 RAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |||+.+|+++||||||++||+.+++.+.+.|+++.+  ++|+|++||+++.+.. ||++++|++|++++
T Consensus       158 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~  226 (243)
T TIGR02315       158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVF  226 (243)
T ss_pred             HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe
Confidence            999999999999999999999999999999988742  6899999999999855 99999999999875

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.4e-46  Score=379.97  Aligned_cols=210  Identities=40%  Similarity=0.605  Sum_probs=179.0

Q ss_pred             EEEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHH---hh
Q 048556          261 IELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW---IR  336 (478)
Q Consensus       261 i~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~---~r  336 (478)
                      |+++|++|+|++.. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++..+   +|
T Consensus         2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~   81 (343)
T PRK11153          2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR   81 (343)
T ss_pred             EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence            68999999996211 357999999999999999999999999999999999999999999999999998877544   47


Q ss_pred             cceEEEecCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556          337 GKIGLVSQEPVLFT-SSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA  413 (478)
Q Consensus       337 ~~i~~v~Q~~~lf~-~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa  413 (478)
                      +.++|+||++.+|+ .|++||+.++..  ..+.++..+     .+.++++.+  |++........+||||||||++||||
T Consensus        82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAra  154 (343)
T PRK11153         82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKA-----RVTELLELV--GLSDKADRYPAQLSGGQKQRVAIARA  154 (343)
T ss_pred             cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence            88999999999987 599999987632  122222211     223455555  66666677788999999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          414 ILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |+.+|+++||||||++||+.+++.+.+.|+++.+  ++|+|++||+++.+.. ||++++|++|++++
T Consensus       155 L~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~  221 (343)
T PRK11153        155 LASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVE  221 (343)
T ss_pred             HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999998753  6899999999999876 99999999999975

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=100.00  E-value=2.2e-46  Score=357.80  Aligned_cols=208  Identities=25%  Similarity=0.489  Sum_probs=174.4

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++||++.|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..+++.++
T Consensus         1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~   78 (220)
T cd03263           1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLG   78 (220)
T ss_pred             CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEE
Confidence            4789999999642 257999999999999999999999999999999999999999999999999987643 56678899


Q ss_pred             EEecCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556          341 LVSQEPVLFT-SSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD  417 (478)
Q Consensus       341 ~v~Q~~~lf~-~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~  417 (478)
                      |++|++.+|. .|++||+.++..  ....++..+     .+.++++.+  |+.........+|||||+||++||||++.+
T Consensus        79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~  151 (220)
T cd03263          79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKE-----EVELLLRVL--GLTDKANKRARTLSGGMKRKLSLAIALIGG  151 (220)
T ss_pred             EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHHhChhhhCCHHHHHHHHHHHHHhcC
Confidence            9999999985 699999987431  112211111     123344443  454445566789999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          418 PRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       418 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus       152 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~  212 (220)
T cd03263         152 PSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRC  212 (220)
T ss_pred             CCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence            9999999999999999999999999988777899999999999865 99999999999975

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=100.00  E-value=6.4e-46  Score=354.26  Aligned_cols=210  Identities=31%  Similarity=0.476  Sum_probs=186.5

Q ss_pred             EEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH----HHhhc
Q 048556          262 ELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL----KWIRG  337 (478)
Q Consensus       262 ~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~----~~~r~  337 (478)
                      .+.|++|+|+++  .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.    ...|+
T Consensus         2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   79 (218)
T cd03290           2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY   79 (218)
T ss_pred             eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence            578999999743  579999999999999999999999999999999999999999999999998866542    23567


Q ss_pred             ceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556          338 KIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD  417 (478)
Q Consensus       338 ~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~  417 (478)
                      .++|++|++.+|+.|++||+.++.+ ...++..++++..++.+.+..+|.|+++.++....+|||||+||++||||++++
T Consensus        80 ~i~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~  158 (218)
T cd03290          80 SVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN  158 (218)
T ss_pred             eEEEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence            8999999999998899999998754 345566777888888888999999999999999999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHH--HHHHhc-CCCeEEEEecCchhhhhcCEEEEEeCCE
Q 048556          418 PRILLLDEATSALDAESERVVQE--ALDKIM-INRTTVIVAHRLSTVRNADLIAVIHQGK  474 (478)
Q Consensus       418 ~~ililDEpts~LD~~~~~~i~~--~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl~~G~  474 (478)
                      |+++||||||++||+.+.+.+++  .++.+. .+.|+|++||+++.++.||++++|++|.
T Consensus       159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~  218 (218)
T cd03290         159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS  218 (218)
T ss_pred             CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence            99999999999999999999988  455544 3689999999999998899999999984

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=100.00  E-value=2.9e-46  Score=353.99  Aligned_cols=201  Identities=26%  Similarity=0.459  Sum_probs=173.0

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++|++++|++   +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...  ..+++.++
T Consensus         1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~   75 (208)
T cd03268           1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG   75 (208)
T ss_pred             CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence            478999999953   4799999999999999999999999999999999999999999999999988654  45678899


Q ss_pred             EEecCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556          341 LVSQEPVLFT-SSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD  417 (478)
Q Consensus       341 ~v~Q~~~lf~-~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~  417 (478)
                      |+||++.+|+ .|++||+.++..  ..+.+++.++++..++           +........+||||||||++||||++.+
T Consensus        76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~la~al~~~  144 (208)
T cd03268          76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGL-----------KDSAKKKVKGFSLGMKQRLGIALALLGN  144 (208)
T ss_pred             EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCC-----------HHHHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence            9999999885 599999987531  1233444544444444           3344455788999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          418 PRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       418 ~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |+++||||||++||+.+++.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++
T Consensus       145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~  206 (208)
T cd03268         145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIE  206 (208)
T ss_pred             CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence            99999999999999999999999998875 47899999999998865 99999999999876

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=100.00  E-value=2.9e-46  Score=360.20  Aligned_cols=210  Identities=35%  Similarity=0.548  Sum_probs=176.9

Q ss_pred             EEEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHH---Hhh
Q 048556          261 IELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLK---WIR  336 (478)
Q Consensus       261 i~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~---~~r  336 (478)
                      |+++|++++|+++. ..++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..   ..+
T Consensus         2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (233)
T cd03258           2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR   81 (233)
T ss_pred             eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence            68999999996421 12799999999999999999999999999999999999999999999999998876543   347


Q ss_pred             cceEEEecCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556          337 GKIGLVSQEPVLFT-SSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA  413 (478)
Q Consensus       337 ~~i~~v~Q~~~lf~-~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa  413 (478)
                      +.++|+||++.+|. .|++||+.++...  .+..+.     ...+.++++.+  |++........+|||||+||++||||
T Consensus        82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~a  154 (233)
T cd03258          82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEI-----EERVLELLELV--GLEDKADAYPAQLSGGQKQRVGIARA  154 (233)
T ss_pred             hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHC--CChhhhhcChhhCCHHHHHHHHHHHH
Confidence            88999999999997 4999999875321  111111     11234455555  66666667778999999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          414 ILKDPRILLLDEATSALDAESERVVQEALDKIM-I-NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ++++|+++||||||++||+.+++.+.+.|+++. + ++|+|++||+++.+.. ||++++|++|++++
T Consensus       155 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~  221 (233)
T cd03258         155 LANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVE  221 (233)
T ss_pred             HhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999999998875 3 6899999999999866 99999999999975

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.1e-46  Score=369.18  Aligned_cols=210  Identities=33%  Similarity=0.572  Sum_probs=176.8

Q ss_pred             EEEEeEEEECCCCC--CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC--HHHhh
Q 048556          261 IELKDIYFSYPSRP--GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ--LKWIR  336 (478)
Q Consensus       261 i~~~~v~~~y~~~~--~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~--~~~~r  336 (478)
                      ++++||+|+|++..  .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+  ...++
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~   82 (287)
T PRK13637          3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR   82 (287)
T ss_pred             EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence            78999999996421  146999999999999999999999999999999999999999999999999997754  35678


Q ss_pred             cceEEEecCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCcc--ccccCCCCCCChHHHHHHHH
Q 048556          337 GKIGLVSQEP--VLFTSSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLD--TMVGEHGTQLSGGQKQRIAI  410 (478)
Q Consensus       337 ~~i~~v~Q~~--~lf~~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~--t~~~~~g~~LSgGq~Qrl~l  410 (478)
                      +.++||||++  .+|+.|++||+.++..  ..+.++..+.     +.+.++.+  |+.  +........||||||||++|
T Consensus        83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~~LSgGq~qrv~i  155 (287)
T PRK13637         83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENR-----VKRAMNIV--GLDYEDYKDKSPFELSGGQKRRVAI  155 (287)
T ss_pred             hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHH-----HHHHHHHc--CCCchhhccCCcccCCHHHHHHHHH
Confidence            8999999998  5778899999997632  2233333221     12333333  554  45667789999999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEee
Q 048556          411 ARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVR-NADLIAVIHQGKLVE  477 (478)
Q Consensus       411 ARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~  477 (478)
                      ||||+.+|+++||||||++||+.+++.+.+.|+++.+  ++|+|++||+++.+. .||+|++|++|++++
T Consensus       156 AraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~  225 (287)
T PRK13637        156 AGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCEL  225 (287)
T ss_pred             HHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999998753  689999999999875 599999999999875

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.4e-46  Score=360.15  Aligned_cols=206  Identities=37%  Similarity=0.646  Sum_probs=177.4

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      .++++|++|+|++   +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..++|+.+
T Consensus         3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i   79 (241)
T PRK14250          3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI   79 (241)
T ss_pred             eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence            4889999999963   4699999999999999999999999999999999999999999999999999887777888899


Q ss_pred             EEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHHHHHHcCCC
Q 048556          340 GLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQKQRIAIARAILKDP  418 (478)
Q Consensus       340 ~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~Qrl~lARall~~~  418 (478)
                      +|+||++.+|+.|++||+.++......++       ..+.++++.+  |++ ........+|||||+||++||||++++|
T Consensus        80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~-------~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p  150 (241)
T PRK14250         80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKN-------VDVEYYLSIV--GLNKEYATRDVKNLSGGEAQRVSIARTLANNP  150 (241)
T ss_pred             EEEecCchhchhhHHHHHhcchhhcCcHH-------HHHHHHHHHc--CCCHHHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence            99999999999999999987642111110       1122344443  453 3455678899999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          419 RILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       419 ~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +++||||||++||+.+++.+.+.|+++.+  ++|+|++||+++.+.. ||+|++|++|++++
T Consensus       151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~  212 (241)
T PRK14250        151 EVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVE  212 (241)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEE
Confidence            99999999999999999999999998753  7899999999999875 99999999999875

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=100.00  E-value=3.1e-46  Score=361.43  Aligned_cols=205  Identities=34%  Similarity=0.543  Sum_probs=174.0

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++|+++.|++   +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.  .++.++
T Consensus         3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~   77 (239)
T cd03296           3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG   77 (239)
T ss_pred             EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence            789999999963   479999999999999999999999999999999999999999999999999876543  257899


Q ss_pred             EEecCCCCCcc-cHHHHHhcCCCCC------CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556          341 LVSQEPVLFTS-SIKDNINYGKDGA------SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA  413 (478)
Q Consensus       341 ~v~Q~~~lf~~-ti~eNl~~~~~~~------~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa  413 (478)
                      |+||++.+|.. |++||+.++....      ..++..     ..+.++++.+  |++........+|||||+||++||||
T Consensus        78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~a  150 (239)
T cd03296          78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIR-----AKVHELLKLV--QLDWLADRYPAQLSGGQRQRVALARA  150 (239)
T ss_pred             EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHH-----HHHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHH
Confidence            99999999864 9999998764211      111111     1223445554  56656667778999999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          414 ILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |+.+|+++||||||++||+.+++.+.+.|+++.+  ++|+|++||+++.+.. ||++++|++|++++
T Consensus       151 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~  217 (239)
T cd03296         151 LAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQ  217 (239)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence            9999999999999999999999999999988753  6899999999998765 99999999999875

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.6e-46  Score=367.18  Aligned_cols=209  Identities=32%  Similarity=0.586  Sum_probs=176.1

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      -++++|++|.|++  ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.+
T Consensus         4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i   81 (274)
T PRK13647          4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV   81 (274)
T ss_pred             eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence            3899999999963  24699999999999999999999999999999999999999999999999999888878888899


Q ss_pred             EEEecCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556          340 GLVSQEP--VLFTSSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL  415 (478)
Q Consensus       340 ~~v~Q~~--~lf~~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall  415 (478)
                      +|+||++  .++..|++||+.++..  ..+.++..+     .+.++++.+  |+..........|||||+||++|||||+
T Consensus        82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LSgG~~qrv~laraL~  154 (274)
T PRK13647         82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVER-----RVEEALKAV--RMWDFRDKPPYHLSYGQKKRVAIAGVLA  154 (274)
T ss_pred             EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHHC--CCHHHhcCChhhCCHHHHHHHHHHHHHH
Confidence            9999998  5778899999998632  122222111     112233332  4444445556799999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEee
Q 048556          416 KDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVR-NADLIAVIHQGKLVE  477 (478)
Q Consensus       416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~  477 (478)
                      .+|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++
T Consensus       155 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~  218 (274)
T PRK13647        155 MDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLA  218 (274)
T ss_pred             cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999998875 4789999999999885 599999999999875

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=100.00  E-value=4.9e-46  Score=357.18  Aligned_cols=211  Identities=35%  Similarity=0.515  Sum_probs=174.6

Q ss_pred             EEEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH---HHhh
Q 048556          261 IELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL---KWIR  336 (478)
Q Consensus       261 i~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~---~~~r  336 (478)
                      ++++||+++|++.+ ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.   ..+|
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (228)
T cd03257           2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR   81 (228)
T ss_pred             eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence            68999999996421 1269999999999999999999999999999999999999999999999999987763   5678


Q ss_pred             cceEEEecCC--CCCc-ccHHHHHhcCCCCC---CHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHH
Q 048556          337 GKIGLVSQEP--VLFT-SSIKDNINYGKDGA---SIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQKQRIA  409 (478)
Q Consensus       337 ~~i~~v~Q~~--~lf~-~ti~eNl~~~~~~~---~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~Qrl~  409 (478)
                      +.++|++|++  .++. .|++||+.++....   ..++..+..    ..++++.+  |+. ........+||||||||++
T Consensus        82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~----~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~  155 (228)
T cd03257          82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEA----VLLLLVGV--GLPEEVLNRYPHELSGGQRQRVA  155 (228)
T ss_pred             ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHH----HHHHHHHC--CCChhHhhCCchhcCHHHHHHHH
Confidence            8999999999  3454 59999998642111   111111100    12344444  553 4567778999999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          410 IARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       410 lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |||||+.+|+++||||||++||+.+++.+.+.|+++.+  ++|+|++||+++.+.. ||++++|++|++++
T Consensus       156 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~  226 (228)
T cd03257         156 IARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE  226 (228)
T ss_pred             HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEe
Confidence            99999999999999999999999999999999998753  6899999999999874 99999999999875

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.5e-46  Score=378.86  Aligned_cols=207  Identities=29%  Similarity=0.490  Sum_probs=175.6

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      .++++|++++|++  +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+..  ++.|
T Consensus         3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i   78 (356)
T PRK11650          3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI   78 (356)
T ss_pred             EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence            3899999999942  24799999999999999999999999999999999999999999999999999887754  4789


Q ss_pred             EEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556          340 GLVSQEPVLFTS-SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK  416 (478)
Q Consensus       340 ~~v~Q~~~lf~~-ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~  416 (478)
                      +||||++.+|+. |++||+.++...  .+.++..+     .+.+.++.+  |++........+||||||||++|||||++
T Consensus        79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LSgGq~QRvalARAL~~  151 (356)
T PRK11650         79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEE-----RVAEAARIL--ELEPLLDRKPRELSGGQRQRVAMGRAIVR  151 (356)
T ss_pred             EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHH-----HHHHHHHHc--CChhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence            999999999975 999999987431  22222211     122333333  55555566678999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +|++||||||||+||+.+++.+.+.|+++.+  +.|+|+|||+++.+.. ||+|++|++|++++
T Consensus       152 ~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~  215 (356)
T PRK11650        152 EPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQ  215 (356)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE
Confidence            9999999999999999999999999988754  6899999999997765 99999999999975

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=100.00  E-value=2.7e-46  Score=357.38  Aligned_cols=205  Identities=35%  Similarity=0.531  Sum_probs=171.1

Q ss_pred             EEEEeEEEECCCCCC-CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          261 IELKDIYFSYPSRPG-EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       261 i~~~~v~~~y~~~~~-~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      ++++|+++.|++... +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..     .++.+
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i   75 (220)
T cd03293           1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR   75 (220)
T ss_pred             CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence            478999999964111 479999999999999999999999999999999999999999999999998863     36789


Q ss_pred             EEEecCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556          340 GLVSQEPVLFT-SSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK  416 (478)
Q Consensus       340 ~~v~Q~~~lf~-~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~  416 (478)
                      +|+||++.+|+ .|++||+.++...  .+.++..     ..+.++++.+  |++........+||||||||++|||||+.
T Consensus        76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~  148 (220)
T cd03293          76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEAR-----ERAEELLELV--GLSGFENAYPHQLSGGMRQRVALARALAV  148 (220)
T ss_pred             EEEecccccccCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence            99999999998 5999999875321  1111111     1123444444  55555666678999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEe--CCEEee
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIH--QGKLVE  477 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~--~G~i~~  477 (478)
                      +|+++||||||++||+.+++.+.+.|+++.  .++|+|++||+++.+.. ||++++|+  +|++++
T Consensus       149 ~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~  214 (220)
T cd03293         149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVA  214 (220)
T ss_pred             CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEE
Confidence            999999999999999999999999998874  36899999999998765 99999999  799986

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10908 cell division protein FtsE; Provisional

Probab=100.00  E-value=1e-45  Score=353.86  Aligned_cols=208  Identities=28%  Similarity=0.479  Sum_probs=174.3

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHH---hhc
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW---IRG  337 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~---~r~  337 (478)
                      ++++|+++.|++  ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...   +|+
T Consensus         2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~   79 (222)
T PRK10908          2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR   79 (222)
T ss_pred             EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence            689999999942  247999999999999999999999999999999999999999999999999988766443   678


Q ss_pred             ceEEEecCCCCC-cccHHHHHhcCC--CCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 048556          338 KIGLVSQEPVLF-TSSIKDNINYGK--DGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI  414 (478)
Q Consensus       338 ~i~~v~Q~~~lf-~~ti~eNl~~~~--~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal  414 (478)
                      .++|+||++.+| ..|++||+.++.  ...++++..+.     +.++++.+  |+.........+||||||||++||||+
T Consensus        80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral  152 (222)
T PRK10908         80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRR-----VSAALDKV--GLLDKAKNFPIQLSGGEQQRVGIARAV  152 (222)
T ss_pred             heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHH-----HHHHHHHc--CChhhhhCCchhCCHHHHHHHHHHHHH
Confidence            899999999875 459999998753  12233332221     12233333  454455566789999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          415 LKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|+++.
T Consensus       153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  217 (222)
T PRK10908        153 VNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG  217 (222)
T ss_pred             HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence            99999999999999999999999999999875 46899999999999877 89999999999864

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.6e-46  Score=363.20  Aligned_cols=208  Identities=32%  Similarity=0.519  Sum_probs=175.0

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC-----CCccEEEECCeecCC--CCH
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGVNLKE--FQL  332 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~--~~~  332 (478)
                      .++++|++++|++   +++|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|+++..  .+.
T Consensus         6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   82 (253)
T PRK14242          6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV   82 (253)
T ss_pred             EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence            5899999999963   469999999999999999999999999999999999975     589999999999864  345


Q ss_pred             HHhhcceEEEecCCCCCcccHHHHHhcCCCC--C-C----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556          333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKDG--A-S----IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK  405 (478)
Q Consensus       333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~--~-~----~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~  405 (478)
                      ..+|+.++|+||++.+|+.|++||+.++...  . .    .+++.++++..++.+++       .+.++....+||||||
T Consensus        83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~  155 (253)
T PRK14242         83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV-------KDRLHESALGLSGGQQ  155 (253)
T ss_pred             HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCHHHH
Confidence            5678899999999999989999999875311  1 1    12333334333332221       2345667889999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus       156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~  228 (253)
T PRK14242        156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIE  228 (253)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999988667899999999998865 99999999999875

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=100.00  E-value=8.2e-46  Score=360.18  Aligned_cols=207  Identities=34%  Similarity=0.532  Sum_probs=174.8

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCC-----ccEEEECCeecCCC--CHH
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ-----AGEVLIDGVNLKEF--QLK  333 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~-----~G~i~~~g~~~~~~--~~~  333 (478)
                      ++++||+++|++   .++++|+||+|++||+++|+||||||||||+++|+|+++|+     +|+|.++|.++...  +..
T Consensus         2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~   78 (247)
T TIGR00972         2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV   78 (247)
T ss_pred             EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence            789999999963   36999999999999999999999999999999999999998     99999999998753  355


Q ss_pred             HhhcceEEEecCCCCCcccHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCcc----ccccCCCCCCChHHHH
Q 048556          334 WIRGKIGLVSQEPVLFTSSIKDNINYGKDG---ASIAEIMAAAELANAAKFIDSLPQGLD----TMVGEHGTQLSGGQKQ  406 (478)
Q Consensus       334 ~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~---~~~~~~~~a~~~~~~~~~i~~lp~g~~----t~~~~~g~~LSgGq~Q  406 (478)
                      .+++.++|+||++.+|+.|++||+.++...   .+.++..+     .+.+.++.+  |+.    ........+|||||||
T Consensus        79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~~~LSgG~~q  151 (247)
T TIGR00972        79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDE-----IVEESLKKA--ALWDEVKDRLHDSALGLSGGQQQ  151 (247)
T ss_pred             HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHH-----HHHHHHHHc--CCCcchhhHhhCCcccCCHHHHH
Confidence            678899999999999999999999875321   12222111     122233333  443    4556778899999999


Q ss_pred             HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          407 RIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       407 rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |++|||||+.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus       152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~  223 (247)
T TIGR00972       152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVE  223 (247)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999999999999999988766899999999998765 99999999999875

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=100.00  E-value=4.7e-46  Score=358.39  Aligned_cols=207  Identities=25%  Similarity=0.463  Sum_probs=177.6

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh-hcce
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI-RGKI  339 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i  339 (478)
                      ++++|+++.|++   +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.+.+ ++.+
T Consensus         1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i   77 (232)
T cd03218           1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI   77 (232)
T ss_pred             CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence            478999999963   469999999999999999999999999999999999999999999999999887766553 5679


Q ss_pred             EEEecCCCCCcc-cHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556          340 GLVSQEPVLFTS-SIKDNINYGKDGA--SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK  416 (478)
Q Consensus       340 ~~v~Q~~~lf~~-ti~eNl~~~~~~~--~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~  416 (478)
                      +|+||++.+|++ |++||+.++.+..  ..++..     ..+.++++.+  |++........+||||||||++||||++.
T Consensus        78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~  150 (232)
T cd03218          78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKERE-----EKLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT  150 (232)
T ss_pred             EEecCCccccccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence            999999999987 9999998754221  111211     1234555555  67777778889999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus       151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~  213 (232)
T cd03218         151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLA  213 (232)
T ss_pred             CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence            999999999999999999999999998875 46899999999987665 99999999999864

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.8e-46  Score=368.92  Aligned_cols=210  Identities=27%  Similarity=0.510  Sum_probs=176.5

Q ss_pred             EEEEeEEEECCCCC--CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCC----CCHHH
Q 048556          261 IELKDIYFSYPSRP--GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE----FQLKW  334 (478)
Q Consensus       261 i~~~~v~~~y~~~~--~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~----~~~~~  334 (478)
                      |+++|++|+|+...  .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++..    .+..+
T Consensus         2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   81 (288)
T PRK13643          2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP   81 (288)
T ss_pred             EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence            78999999996321  1359999999999999999999999999999999999999999999999999853    34567


Q ss_pred             hhcceEEEecCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHH
Q 048556          335 IRGKIGLVSQEP--VLFTSSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQKQRIA  409 (478)
Q Consensus       335 ~r~~i~~v~Q~~--~lf~~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~Qrl~  409 (478)
                      +|+.++||+|+|  .+|..|+.||+.++...  .+.++..+     .+.+.++.+  |+. ........+||||||||++
T Consensus        82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~LSgGqkqrva  154 (288)
T PRK13643         82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEK-----IAAEKLEMV--GLADEFWEKSPFELSGGQMRRVA  154 (288)
T ss_pred             HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CCChhhccCCcccCCHHHHHHHH
Confidence            889999999988  78889999999987432  22333221     123344444  553 3456778999999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEee
Q 048556          410 IARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVR-NADLIAVIHQGKLVE  477 (478)
Q Consensus       410 lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~  477 (478)
                      |||||+.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++
T Consensus       155 iA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~  224 (288)
T PRK13643        155 IAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIIS  224 (288)
T ss_pred             HHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999998875 4789999999999885 499999999999975

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=100.00  E-value=4.9e-46  Score=344.02  Aligned_cols=176  Identities=35%  Similarity=0.673  Sum_probs=164.0

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++|++++|+++ ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++... ...+++.++
T Consensus         1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~   78 (178)
T cd03247           1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS   78 (178)
T ss_pred             CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence            4789999999743 23699999999999999999999999999999999999999999999999988766 566788999


Q ss_pred             EEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCE
Q 048556          341 LVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI  420 (478)
Q Consensus       341 ~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~i  420 (478)
                      |+||++.+|+.|++||+                                       ...|||||+||++||||++++|++
T Consensus        79 ~~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~  119 (178)
T cd03247          79 VLNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPI  119 (178)
T ss_pred             EEccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence            99999999999999998                                       568999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       421 lilDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      +||||||++||+.+++.+++.|++..+++|+|++||+++.++.||++++|++|++++
T Consensus       120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~  176 (178)
T cd03247         120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIM  176 (178)
T ss_pred             EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEe
Confidence            999999999999999999999998866789999999999998899999999999976

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=100.00  E-value=4.1e-46  Score=354.36  Aligned_cols=206  Identities=31%  Similarity=0.515  Sum_probs=172.6

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH---HHhhc
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL---KWIRG  337 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~---~~~r~  337 (478)
                      ++++|+++.|+++  +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.   ..+|+
T Consensus         1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~   78 (214)
T cd03292           1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR   78 (214)
T ss_pred             CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence            4689999999642  469999999999999999999999999999999999999999999999999877654   34678


Q ss_pred             ceEEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 048556          338 KIGLVSQEPVLFTS-SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI  414 (478)
Q Consensus       338 ~i~~v~Q~~~lf~~-ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal  414 (478)
                      .++|+||++.+|+. |++||+.++...  .+.++..+     .+.+.++.+  |++........+||||||||++||||+
T Consensus        79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral  151 (214)
T cd03292          79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRK-----RVPAALELV--GLSHKHRALPAELSGGEQQRVAIARAI  151 (214)
T ss_pred             heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCChhhcCHHHHHHHHHHHHH
Confidence            89999999999985 999999875321  12222111     122333333  455455556779999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 048556          415 LKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKL  475 (478)
Q Consensus       415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i  475 (478)
                      +++|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++
T Consensus       152 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~  214 (214)
T cd03292         152 VNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL  214 (214)
T ss_pred             HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            99999999999999999999999999999874 47899999999999876 899999999975

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.1e-46  Score=376.94  Aligned_cols=206  Identities=31%  Similarity=0.520  Sum_probs=175.5

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      .|+++|++++|++   .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+..  ++.+
T Consensus         6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i   80 (351)
T PRK11432          6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI   80 (351)
T ss_pred             EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence            5899999999963   4699999999999999999999999999999999999999999999999999877643  5789


Q ss_pred             EEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556          340 GLVSQEPVLFTS-SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK  416 (478)
Q Consensus       340 ~~v~Q~~~lf~~-ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~  416 (478)
                      +||+|++.+|+. |++||+.++...  .+.++..+.     +.+.++.+  |+.........+|||||+||++|||||++
T Consensus        81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~-----v~~~l~~~--gl~~~~~r~~~~LSgGq~QRVaLARaL~~  153 (351)
T PRK11432         81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQR-----VKEALELV--DLAGFEDRYVDQISGGQQQRVALARALIL  153 (351)
T ss_pred             EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHH-----HHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence            999999999986 999999987431  222222211     12233333  45555566678999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +|+++|||||||+||+.+++.+.+.|+++.+  +.|+|+|||+++.+.. ||+|++|++|++++
T Consensus       154 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~  217 (351)
T PRK11432        154 KPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQ  217 (351)
T ss_pred             CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999998754  6899999999998755 99999999999975

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.6e-46  Score=362.41  Aligned_cols=209  Identities=34%  Similarity=0.548  Sum_probs=176.7

Q ss_pred             ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC-----CCccEEEECCeecCC--CC
Q 048556          259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGVNLKE--FQ  331 (478)
Q Consensus       259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~--~~  331 (478)
                      +.++++|+++.|++   .++|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|.++..  .+
T Consensus        12 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~   88 (260)
T PRK10744         12 SKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD   88 (260)
T ss_pred             ceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence            46999999999963   469999999999999999999999999999999999986     579999999999853  45


Q ss_pred             HHHhhcceEEEecCCCCCcccHHHHHhcCCC---CCCHH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHH
Q 048556          332 LKWIRGKIGLVSQEPVLFTSSIKDNINYGKD---GASIA----EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQ  404 (478)
Q Consensus       332 ~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~---~~~~~----~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq  404 (478)
                      ...+|+.++|+||++.+|+.|++||+.++..   ..+.+    +++++++..++.+       ++...+.+...+|||||
T Consensus        89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~Gq  161 (260)
T PRK10744         89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWN-------EVKDKLHQSGYSLSGGQ  161 (260)
T ss_pred             hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCh-------hhHHHHhcCCCCCCHHH
Confidence            5677889999999999999999999987532   12222    2333333333221       22345667788999999


Q ss_pred             HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          405 KQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       405 ~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +||++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus       162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  235 (260)
T PRK10744        162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIE  235 (260)
T ss_pred             HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999988667899999999998865 99999999999875

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=100.00  E-value=1.1e-45  Score=355.02  Aligned_cols=212  Identities=29%  Similarity=0.415  Sum_probs=175.9

Q ss_pred             cEEEEeEEEECCCCCC-CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh---
Q 048556          260 DIELKDIYFSYPSRPG-EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI---  335 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~-~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~---  335 (478)
                      -++++|++++|++... .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+....   
T Consensus         6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~   85 (228)
T PRK10584          6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL   85 (228)
T ss_pred             eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence            4899999999974211 259999999999999999999999999999999999999999999999999988765432   


Q ss_pred             -hcceEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 048556          336 -RGKIGLVSQEPVLFTS-SIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIA  411 (478)
Q Consensus       336 -r~~i~~v~Q~~~lf~~-ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lA  411 (478)
                       ++.++|+||++.+|++ |++||+.++..  ....++.     ...+.++++.+  |++..+......||||||||++||
T Consensus        86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrl~la  158 (228)
T PRK10584         86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQS-----RNGAKALLEQL--GLGKRLDHLPAQLSGGEQQRVALA  158 (228)
T ss_pred             HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CCHhHhhCChhhCCHHHHHHHHHH
Confidence             3679999999999886 99999986421  1111111     11123344444  454455556779999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556          412 RAILKDPRILLLDEATSALDAESERVVQEALDKIM-I-NRTTVIVAHRLSTVRNADLIAVIHQGKLVEK  478 (478)
Q Consensus       412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~  478 (478)
                      |||+.+|+++||||||++||+.+.+.+.+.|+++. + ++|+|++||+++.++.||++++|++|++++.
T Consensus       159 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~  227 (228)
T PRK10584        159 RAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE  227 (228)
T ss_pred             HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence            99999999999999999999999999999998874 3 6899999999999888999999999999864

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=100.00  E-value=4.4e-46  Score=353.88  Aligned_cols=205  Identities=34%  Similarity=0.578  Sum_probs=174.6

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCC--CCHHHhhcc
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE--FQLKWIRGK  338 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~--~~~~~~r~~  338 (478)
                      ++++|++++|++   +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..  .+...+++.
T Consensus         1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   77 (213)
T cd03262           1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK   77 (213)
T ss_pred             CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence            478999999963   479999999999999999999999999999999999999999999999998853  345567889


Q ss_pred             eEEEecCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 048556          339 IGLVSQEPVLFT-SSIKDNINYGKD---GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI  414 (478)
Q Consensus       339 i~~v~Q~~~lf~-~ti~eNl~~~~~---~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal  414 (478)
                      ++|+||++.+|+ .|++||+.++..   ..+.++..+     .+.++++.+  |++..+.....+|||||+||++||||+
T Consensus        78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al  150 (213)
T cd03262          78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEE-----RALELLEKV--GLADKADAYPAQLSGGQQQRVAIARAL  150 (213)
T ss_pred             ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CCHhHhhhCccccCHHHHHHHHHHHHH
Confidence            999999999997 599999987532   122222111     123455555  666667777899999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 048556          415 LKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKL  475 (478)
Q Consensus       415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i  475 (478)
                      +++|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++
T Consensus       151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i  213 (213)
T cd03262         151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI  213 (213)
T ss_pred             hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            99999999999999999999999999999875 46899999999999865 999999999975

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=100.00  E-value=5.9e-46  Score=360.10  Aligned_cols=208  Identities=34%  Similarity=0.558  Sum_probs=177.6

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++||+++|++.  +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+++.++
T Consensus         1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   78 (242)
T cd03295           1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG   78 (242)
T ss_pred             CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence            4689999999641  46999999999999999999999999999999999999999999999999998888777888999


Q ss_pred             EEecCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccc--cccCCCCCCChHHHHHHHHHHHHc
Q 048556          341 LVSQEPVLFT-SSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDT--MVGEHGTQLSGGQKQRIAIARAIL  415 (478)
Q Consensus       341 ~v~Q~~~lf~-~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t--~~~~~g~~LSgGq~Qrl~lARall  415 (478)
                      |+||++.+|+ .|++||+.++...  .+.++.     ...+.++++.+  |+..  .....+.+||||||||++||||++
T Consensus        79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~  151 (242)
T cd03295          79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKI-----RERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALA  151 (242)
T ss_pred             EEccCccccCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence            9999999996 5999999875321  111111     12234555555  5553  566778999999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          416 KDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ++|+++||||||++||+.+++.+.+.|+++.+  ++|+|++||+++.+.. ||+|++|++|++++
T Consensus       152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~  216 (242)
T cd03295         152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQ  216 (242)
T ss_pred             cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999998753  6899999999998655 99999999999975

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=100.00  E-value=6.9e-46  Score=352.67  Aligned_cols=205  Identities=29%  Similarity=0.526  Sum_probs=173.4

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      |+++|+++.|++   +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..  ++.++
T Consensus         1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~   75 (213)
T cd03301           1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA   75 (213)
T ss_pred             CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence            478999999964   4799999999999999999999999999999999999999999999999998765533  46799


Q ss_pred             EEecCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556          341 LVSQEPVLFT-SSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD  417 (478)
Q Consensus       341 ~v~Q~~~lf~-~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~  417 (478)
                      |+||++.+|. .|++||+.++...  ...++..+     .+.++++.+  |++........+||||||||++||||++++
T Consensus        76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qr~~laral~~~  148 (213)
T cd03301          76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDE-----RVREVAELL--QIEHLLDRKPKQLSGGQRQRVALGRAIVRE  148 (213)
T ss_pred             EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCHHHHhCChhhCCHHHHHHHHHHHHHhcC
Confidence            9999999986 4999999875321  12222111     123344444  566566677789999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          418 PRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       418 ~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |+++||||||++||+.+++.+.+.|+++.+  ++|+|++||+++.+.. ||++++|++|++++
T Consensus       149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~  211 (213)
T cd03301         149 PKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQ  211 (213)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe
Confidence            999999999999999999999999988753  6899999999998776 99999999999986

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-45  Score=360.77  Aligned_cols=208  Identities=31%  Similarity=0.463  Sum_probs=174.4

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----CccEEEECCeecCC--CCH
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGVNLKE--FQL  332 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~~~~--~~~  332 (478)
                      -++++|++++|++   .++++|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++..  .+.
T Consensus         7 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   83 (254)
T PRK14273          7 IIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI   83 (254)
T ss_pred             eEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence            5899999999963   4699999999999999999999999999999999999997     48999999998853  344


Q ss_pred             HHhhcceEEEecCCCCCcccHHHHHhcCCCCC---C----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556          333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKDGA---S----IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK  405 (478)
Q Consensus       333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~---~----~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~  405 (478)
                      ..+|+.++|+||++.+|..|++||+.++....   .    ++++.++++..++.+.+       .......+.+||||||
T Consensus        84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgG~~  156 (254)
T PRK14273         84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV-------KDKLNTNALSLSGGQQ  156 (254)
T ss_pred             HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh-------HHHHhCCcccCCHHHH
Confidence            56788999999999999899999998764211   1    12233334443332211       2233456789999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus       157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~  229 (254)
T PRK14273        157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEE  229 (254)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999998767899999999998765 99999999999975

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9e-46  Score=367.32  Aligned_cols=210  Identities=30%  Similarity=0.551  Sum_probs=178.6

Q ss_pred             EEEEeEEEECCCCC--CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCC----CHHH
Q 048556          261 IELKDIYFSYPSRP--GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEF----QLKW  334 (478)
Q Consensus       261 i~~~~v~~~y~~~~--~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~----~~~~  334 (478)
                      ++++|++|+|++.+  .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...    +...
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   82 (286)
T PRK13646          3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP   82 (286)
T ss_pred             EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence            78999999996421  13699999999999999999999999999999999999999999999999998653    3456


Q ss_pred             hhcceEEEecCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccc-cccCCCCCCChHHHHHHH
Q 048556          335 IRGKIGLVSQEP--VLFTSSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDT-MVGEHGTQLSGGQKQRIA  409 (478)
Q Consensus       335 ~r~~i~~v~Q~~--~lf~~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t-~~~~~g~~LSgGq~Qrl~  409 (478)
                      +|+.++||||++  .+|+.|++||+.++...  .+.++..+.     +.++++.+  |+++ .....+.+||||||||++
T Consensus        83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~  155 (286)
T PRK13646         83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIA  155 (286)
T ss_pred             HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence            788999999987  58888999999986422  233333221     24455555  7763 556788999999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhh-hcCEEEEEeCCEEee
Q 048556          410 IARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVR-NADLIAVIHQGKLVE  477 (478)
Q Consensus       410 lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~  477 (478)
                      |||||+.+|+++||||||++||+.++..+.+.|+++.  .++|+|+|||+++.+. .||+|++|++|++++
T Consensus       156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~  226 (286)
T PRK13646        156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVS  226 (286)
T ss_pred             HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999875  3789999999999875 599999999999975

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.4e-46  Score=365.82  Aligned_cols=210  Identities=31%  Similarity=0.549  Sum_probs=177.1

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      -++++||+++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+...+++.+
T Consensus         5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i   83 (279)
T PRK13635          5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV   83 (279)
T ss_pred             eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence            38999999999642 34699999999999999999999999999999999999999999999999999888877788899


Q ss_pred             EEEecCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556          340 GLVSQEP--VLFTSSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL  415 (478)
Q Consensus       340 ~~v~Q~~--~lf~~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall  415 (478)
                      +|+||++  .++..|++||+.++...  .+.++..+     .+.+.+..+  |++..+......|||||+||++|||||+
T Consensus        84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LS~G~~qrv~laral~  156 (279)
T PRK13635         84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVE-----RVDQALRQV--GMEDFLNREPHRLSGGQKQRVAIAGVLA  156 (279)
T ss_pred             EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHH-----HHHHHHHHc--CChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence            9999998  45567999999886321  12222111     112223322  4444455566799999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          416 KDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      .+|+++||||||++||+.+++.+++.|+++.+  ++|+|++||+++.+..||+|++|++|++++
T Consensus       157 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~  220 (279)
T PRK13635        157 LQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILE  220 (279)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence            99999999999999999999999999998764  689999999999988899999999999875

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=6.9e-46  Score=377.09  Aligned_cols=206  Identities=31%  Similarity=0.496  Sum_probs=179.3

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      .++++|++++|++   .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+..  ++.+
T Consensus         4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i   78 (353)
T TIGR03265         4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY   78 (353)
T ss_pred             EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence            4899999999963   4699999999999999999999999999999999999999999999999999877654  5789


Q ss_pred             EEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556          340 GLVSQEPVLFTS-SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK  416 (478)
Q Consensus       340 ~~v~Q~~~lf~~-ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~  416 (478)
                      +||+|++.+|+. |++||+.|+...  .+.++..     ..+.++++.+  |++......+.+|||||+||++|||||+.
T Consensus        79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~-----~~~~~~l~~l--~L~~~~~~~~~~LSgGq~QRvaLARaL~~  151 (353)
T TIGR03265        79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVA-----ERVAELLDLV--GLPGSERKYPGQLSGGQQQRVALARALAT  151 (353)
T ss_pred             EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence            999999999975 999999987432  1222221     1234555555  67777778889999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +|++++||||||+||+.+++.+.+.|+++.+  +.|+|+|||+++.+.. ||+|++|++|++++
T Consensus       152 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~  215 (353)
T TIGR03265       152 SPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQ  215 (353)
T ss_pred             CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999988753  6899999999998755 99999999999975

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=100.00  E-value=8.8e-46  Score=340.79  Aligned_cols=172  Identities=38%  Similarity=0.695  Sum_probs=161.7

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++|++++|++. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.+.+++.++
T Consensus         1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   79 (173)
T cd03246           1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG   79 (173)
T ss_pred             CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence            4789999999742 246999999999999999999999999999999999999999999999999999888888899999


Q ss_pred             EEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCE
Q 048556          341 LVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI  420 (478)
Q Consensus       341 ~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~i  420 (478)
                      |++|++.+|++|++||+                                          |||||+||++||||++.+|++
T Consensus        80 ~~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~  117 (173)
T cd03246          80 YLPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRI  117 (173)
T ss_pred             EECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence            99999999999999998                                          999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEEeCCEE
Q 048556          421 LLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIAVIHQGKL  475 (478)
Q Consensus       421 lilDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl~~G~i  475 (478)
                      +||||||++||+.+++.+.+.|+++. +++|+|++||+++.++.||++++|++|++
T Consensus       118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i  173 (173)
T cd03246         118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV  173 (173)
T ss_pred             EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence            99999999999999999999998875 47899999999999988999999999974

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=100.00  E-value=1.1e-45  Score=356.88  Aligned_cols=206  Identities=29%  Similarity=0.525  Sum_probs=177.0

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++|++++|++   +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+... ++.++
T Consensus         2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~   77 (236)
T TIGR03864         2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG   77 (236)
T ss_pred             EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence            689999999963   47999999999999999999999999999999999999999999999999987766544 45899


Q ss_pred             EEecCCCCC-cccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556          341 LVSQEPVLF-TSSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD  417 (478)
Q Consensus       341 ~v~Q~~~lf-~~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~  417 (478)
                      |+||++.++ ..|++||+.++...  .+.++..     ..+.++++.+  |++........+|||||+||++||||++++
T Consensus        78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~  150 (236)
T TIGR03864        78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEAR-----ERIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR  150 (236)
T ss_pred             EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence            999999885 46999999875321  1222211     1234455555  777777888899999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          418 PRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       418 ~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      |+++||||||++||+.+++.+.+.|+++.  +++|+|++||+++.+..||++++|++|++++
T Consensus       151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~  212 (236)
T TIGR03864       151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLA  212 (236)
T ss_pred             CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEE
Confidence            99999999999999999999999999875  3689999999999988899999999999875

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-45  Score=367.29  Aligned_cols=210  Identities=31%  Similarity=0.533  Sum_probs=176.6

Q ss_pred             EEEEeEEEECCCCC--CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCC----CCHHH
Q 048556          261 IELKDIYFSYPSRP--GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE----FQLKW  334 (478)
Q Consensus       261 i~~~~v~~~y~~~~--~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~----~~~~~  334 (478)
                      ++++|++|+|++..  ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++..    .+...
T Consensus         3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   82 (290)
T PRK13634          3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP   82 (290)
T ss_pred             EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence            78999999996421  1469999999999999999999999999999999999999999999999999863    34556


Q ss_pred             hhcceEEEecCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHH
Q 048556          335 IRGKIGLVSQEP--VLFTSSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQKQRIA  409 (478)
Q Consensus       335 ~r~~i~~v~Q~~--~lf~~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~Qrl~  409 (478)
                      +|+.++||||++  .+|+.|++||+.++...  .+.++..+.     +.+.++.+  |++ .........||||||||++
T Consensus        83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~  155 (290)
T PRK13634         83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQK-----AREMIELV--GLPEELLARSPFELSGGQMRRVA  155 (290)
T ss_pred             HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHC--CCChhhhhCCcccCCHHHHHHHH
Confidence            788999999997  68888999999986421  233333221     23344444  564 3446678899999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          410 IARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       410 lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |||||+.+|+++||||||++||+.+...+.+.|+++.+  +.|+|++||+++.+.. ||||++|++|++++
T Consensus       156 lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~  226 (290)
T PRK13634        156 IAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFL  226 (290)
T ss_pred             HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999988753  6899999999998765 99999999999875

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=100.00  E-value=9.5e-46  Score=370.09  Aligned_cols=207  Identities=25%  Similarity=0.455  Sum_probs=174.3

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      .++++|++++|++   ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|+.+
T Consensus         7 ~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i   82 (306)
T PRK13537          7 PIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV   82 (306)
T ss_pred             eEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence            5899999999963   47999999999999999999999999999999999999999999999999987654 3568899


Q ss_pred             EEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556          340 GLVSQEPVLFTS-SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK  416 (478)
Q Consensus       340 ~~v~Q~~~lf~~-ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~  416 (478)
                      +|+||++.+|.. |++||+.+....  .+..+..+.     +.+.++.+  |+.........+||||||||++|||||++
T Consensus        83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~aL~~  155 (306)
T PRK13537         83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARAL-----VPPLLEFA--KLENKADAKVGELSGGMKRRLTLARALVN  155 (306)
T ss_pred             EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchHhcCchhhCCHHHHHHHHHHHHHhC
Confidence            999999999874 999999864321  222222211     12333332  44444445567899999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +|++++|||||++||+.+++.+++.|+++. +++|+|++||+++.++. ||+|++|++|++++
T Consensus       156 ~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~  218 (306)
T PRK13537        156 DPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIA  218 (306)
T ss_pred             CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999999875 46899999999999876 99999999999875

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=100.00  E-value=7.2e-46  Score=351.80  Aligned_cols=203  Identities=25%  Similarity=0.484  Sum_probs=173.5

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++|+++.|++   +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++..    ..++.++
T Consensus         1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~   73 (210)
T cd03269           1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG   73 (210)
T ss_pred             CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence            478999999963   479999999999999999999999999999999999999999999999988753    4577899


Q ss_pred             EEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556          341 LVSQEPVLFTS-SIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD  417 (478)
Q Consensus       341 ~v~Q~~~lf~~-ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~  417 (478)
                      |+||++.+|++ |++||+.++..  .....+.     ...+.++++.+  |++........+||||||||++||||++.+
T Consensus        74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~  146 (210)
T cd03269          74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEA-----RRRIDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHD  146 (210)
T ss_pred             EeccCCcCCcCCcHHHHHHHHHHHcCCChHHH-----HHHHHHHHHHc--CChHHHhCcHhhCCHHHHHHHHHHHHHhcC
Confidence            99999999986 99999987531  1111111     11234555555  666666777889999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          418 PRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       418 ~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |+++||||||++||+.+++.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++
T Consensus       147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~  208 (210)
T cd03269         147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVL  208 (210)
T ss_pred             CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEe
Confidence            99999999999999999999999998875 46899999999998865 99999999999876

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-45  Score=362.53  Aligned_cols=209  Identities=34%  Similarity=0.537  Sum_probs=176.0

Q ss_pred             ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----CccEEEECCeecCC--CC
Q 048556          259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGVNLKE--FQ  331 (478)
Q Consensus       259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~~~~--~~  331 (478)
                      +.|+++||++.|++   +++|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++..  .+
T Consensus        18 ~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~   94 (267)
T PRK14235         18 IKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD   94 (267)
T ss_pred             ceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence            46999999999963   4799999999999999999999999999999999999975     89999999999864  34


Q ss_pred             HHHhhcceEEEecCCCCCcccHHHHHhcCCC--CC--CH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChH
Q 048556          332 LKWIRGKIGLVSQEPVLFTSSIKDNINYGKD--GA--SI----AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGG  403 (478)
Q Consensus       332 ~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~--~~--~~----~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgG  403 (478)
                      ...+|+.++|+||++.+|+.|++||+.++..  ..  +.    +++.++++..++.+.+       .......+.+||||
T Consensus        95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG  167 (267)
T PRK14235         95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEV-------KDRLHEPGTGLSGG  167 (267)
T ss_pred             hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCHH
Confidence            5567889999999999998899999987531  10  11    2233333333332211       23455678899999


Q ss_pred             HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          404 QKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       404 q~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||||++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus       168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~  242 (267)
T PRK14235        168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVE  242 (267)
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEE
Confidence            999999999999999999999999999999999999999988767899999999999865 89999999999975

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=100.00  E-value=1.2e-45  Score=352.82  Aligned_cols=206  Identities=25%  Similarity=0.441  Sum_probs=171.9

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      |+++|++++|++   +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++.++
T Consensus         1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~   76 (220)
T cd03265           1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG   76 (220)
T ss_pred             CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence            478999999963   4799999999999999999999999999999999999999999999999988653 356678899


Q ss_pred             EEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556          341 LVSQEPVLFTS-SIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD  417 (478)
Q Consensus       341 ~v~Q~~~lf~~-ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~  417 (478)
                      |+||++.+|+. |++||+.++..  ..+.++..+     .+.++++.+  |++........+||||||||++||||++.+
T Consensus        77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qr~~la~al~~~  149 (220)
T cd03265          77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRE-----RIDELLDFV--GLLEAADRLVKTYSGGMRRRLEIARSLVHR  149 (220)
T ss_pred             EecCCccccccCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            99999999886 99999987421  111111111     122334443  444444556689999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          418 PRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       418 ~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |+++||||||++||+.+.+.+.+.|+++.+  ++|+|++||+++.+.. ||++++|++|++++
T Consensus       150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~  212 (220)
T cd03265         150 PEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIA  212 (220)
T ss_pred             CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE
Confidence            999999999999999999999999988753  6899999999998876 99999999999975

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=100.00  E-value=2.4e-45  Score=355.82  Aligned_cols=212  Identities=28%  Similarity=0.488  Sum_probs=179.5

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh-hcce
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI-RGKI  339 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i  339 (478)
                      ++++|+++.|++   +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.+
T Consensus         3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i   79 (242)
T TIGR03411         3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI   79 (242)
T ss_pred             EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence            789999999963   469999999999999999999999999999999999999999999999999887776543 5579


Q ss_pred             EEEecCCCCCcc-cHHHHHhcCCCCCC-H-HH---HHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556          340 GLVSQEPVLFTS-SIKDNINYGKDGAS-I-AE---IMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA  413 (478)
Q Consensus       340 ~~v~Q~~~lf~~-ti~eNl~~~~~~~~-~-~~---~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa  413 (478)
                      +|+||++.+|++ |++||+.++..... . ..   .........+.++++.+  |++.........|||||+||++||||
T Consensus        80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~lara  157 (242)
T TIGR03411        80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGML  157 (242)
T ss_pred             eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence            999999999987 99999988642110 0 00   00011112234555555  67767778889999999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          414 ILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ++.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++
T Consensus       158 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~  222 (242)
T TIGR03411       158 LMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLA  222 (242)
T ss_pred             HhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEe
Confidence            99999999999999999999999999999988767899999999999876 99999999999875

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=100.00  E-value=1.8e-45  Score=373.97  Aligned_cols=205  Identities=35%  Similarity=0.552  Sum_probs=175.6

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      |+++|++++|++   .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||+++...+.  .++.++
T Consensus         3 L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~   77 (353)
T PRK10851          3 IEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG   77 (353)
T ss_pred             EEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence            789999999963   469999999999999999999999999999999999999999999999999977654  357899


Q ss_pred             EEecCCCCCcc-cHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556          341 LVSQEPVLFTS-SIKDNINYGKDG------ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA  413 (478)
Q Consensus       341 ~v~Q~~~lf~~-ti~eNl~~~~~~------~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa  413 (478)
                      ||+|++.+|+. |++||+.++...      .+.++..+     .+.+.++.+  |++........+|||||+||++||||
T Consensus        78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LSgGq~QRvalArA  150 (353)
T PRK10851         78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKA-----KVTQLLEMV--QLAHLADRYPAQLSGGQKQRVALARA  150 (353)
T ss_pred             EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence            99999999986 999999987431      12222211     123344444  55555667788999999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          414 ILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |+++|+++||||||++||+.+++.+.+.|+++.+  ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus       151 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~  217 (353)
T PRK10851        151 LAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQ  217 (353)
T ss_pred             HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999998764  6899999999998766 99999999999975

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-45  Score=357.88  Aligned_cols=208  Identities=32%  Similarity=0.485  Sum_probs=174.6

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----CccEEEECCeecCCCCHHH
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGVNLKEFQLKW  334 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~~~~~~~~~  334 (478)
                      .++++|++++|++   .++++|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++.+.+...
T Consensus         3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~   79 (250)
T PRK14247          3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE   79 (250)
T ss_pred             eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence            3889999999963   4699999999999999999999999999999999999974     6999999999998888778


Q ss_pred             hhcceEEEecCCCCCc-ccHHHHHhcCCCCC----CH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556          335 IRGKIGLVSQEPVLFT-SSIKDNINYGKDGA----SI----AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK  405 (478)
Q Consensus       335 ~r~~i~~v~Q~~~lf~-~ti~eNl~~~~~~~----~~----~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~  405 (478)
                      +|+.++|+||++.+|. .|++||+.++....    ..    +++.++++..++.+.       ++........+|||||+
T Consensus        80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LSgG~~  152 (250)
T PRK14247         80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDE-------VKDRLDAPAGKLSGGQQ  152 (250)
T ss_pred             HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcc-------hhhhhcCCcccCCHHHH
Confidence            8899999999998664 69999998753210    11    123333333332211       12344566789999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||++|||||+++|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus       153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  225 (250)
T PRK14247        153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVE  225 (250)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEE
Confidence            9999999999999999999999999999999999999988767899999999998764 99999999999865

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=100.00  E-value=1.9e-45  Score=353.85  Aligned_cols=207  Identities=26%  Similarity=0.487  Sum_probs=173.5

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHH-hhcce
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW-IRGKI  339 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~i  339 (478)
                      ++++||++.|++   +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus         1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i   77 (230)
T TIGR03410         1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI   77 (230)
T ss_pred             CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence            478999999963   47999999999999999999999999999999999999999999999999998777554 46789


Q ss_pred             EEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCC
Q 048556          340 GLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDP  418 (478)
Q Consensus       340 ~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~  418 (478)
                      +|+||++.+|+. |++||+.++.......+- +.     ..+.++.+ ++++........+|||||+||++||||++++|
T Consensus        78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~-~~-----~~~~l~~~-~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p  150 (230)
T TIGR03410        78 AYVPQGREIFPRLTVEENLLTGLAALPRRSR-KI-----PDEIYELF-PVLKEMLGRRGGDLSGGQQQQLAIARALVTRP  150 (230)
T ss_pred             EEeccCCcccCCCcHHHHHHHHHHhcCcchH-HH-----HHHHHHHH-HhHHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence            999999999987 999999876422211110 00     11122221 12344556678899999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          419 RILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       419 ~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +++||||||++||+.+++.+.+.|++..+  ++|+|++||+++.+.. ||+++++++|++++
T Consensus       151 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~  212 (230)
T TIGR03410       151 KLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVA  212 (230)
T ss_pred             CEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999988754  6899999999999886 99999999999875

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=100.00  E-value=2.8e-45  Score=357.86  Aligned_cols=199  Identities=33%  Similarity=0.506  Sum_probs=171.6

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      .|+++|++++|++   +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.     .+++.+
T Consensus        12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i   83 (257)
T PRK11247         12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT   83 (257)
T ss_pred             cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence            5999999999963   46999999999999999999999999999999999999999999999998763     457889


Q ss_pred             EEEecCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCC
Q 048556          340 GLVSQEPVLFT-SSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDP  418 (478)
Q Consensus       340 ~~v~Q~~~lf~-~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~  418 (478)
                      +|++|++.+|+ .|++||+.++.....++++.+         +++.+  |++........+||||||||++|||||+++|
T Consensus        84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~---------~l~~~--gl~~~~~~~~~~LSgGqkqrl~laraL~~~p  152 (257)
T PRK11247         84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQ---------ALAAV--GLADRANEWPAALSGGQKQRVALARALIHRP  152 (257)
T ss_pred             EEEecCccCCCCCcHHHHHHhcccchHHHHHHH---------HHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence            99999999998 599999998642212223333         33333  5555566677899999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          419 RILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       419 ~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +++||||||++||+.+++.+.+.|+++.  .++|+|++||+++.+.. ||+|++|++|++++
T Consensus       153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~  214 (257)
T PRK11247        153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGL  214 (257)
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence            9999999999999999999999998864  36899999999998765 99999999999875

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.4e-45  Score=354.76  Aligned_cols=209  Identities=22%  Similarity=0.378  Sum_probs=173.9

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHH-hhcc
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW-IRGK  338 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~  338 (478)
                      -++++|++++|++   +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.
T Consensus         5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~   81 (237)
T PRK11614          5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA   81 (237)
T ss_pred             EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence            3899999999963   47999999999999999999999999999999999999999999999999998877554 5778


Q ss_pred             eEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556          339 IGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD  417 (478)
Q Consensus       339 i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~  417 (478)
                      ++|+||++.+|++ |++||+.++......++..+.     +.+.+..++ +++.........||||||||++||||++.+
T Consensus        82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrl~la~al~~~  155 (237)
T PRK11614         82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQER-----IKWVYELFP-RLHERRIQRAGTMSGGEQQMLAIGRALMSQ  155 (237)
T ss_pred             EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHH-----HHHHHHHHH-HHHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence            9999999999986 999999886422222222211     122222222 122233456789999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          418 PRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       418 ~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus       156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  217 (237)
T PRK11614        156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVL  217 (237)
T ss_pred             CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEe
Confidence            99999999999999999999999998875 47899999999997655 99999999999875

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-45  Score=359.64  Aligned_cols=208  Identities=33%  Similarity=0.486  Sum_probs=174.1

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----CccEEEECCeecC--CCCH
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGVNLK--EFQL  332 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~~~--~~~~  332 (478)
                      -++++|+++.|++   +++|+|+||++++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++.  +.+.
T Consensus         4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~   80 (253)
T PRK14267          4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP   80 (253)
T ss_pred             eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence            4899999999963   4699999999999999999999999999999999999987     4999999999986  4455


Q ss_pred             HHhhcceEEEecCCCCCcc-cHHHHHhcCCC--C--CCHH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChH
Q 048556          333 KWIRGKIGLVSQEPVLFTS-SIKDNINYGKD--G--ASIA----EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGG  403 (478)
Q Consensus       333 ~~~r~~i~~v~Q~~~lf~~-ti~eNl~~~~~--~--~~~~----~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgG  403 (478)
                      ..+|+.++|+||++.+|+. |++||+.++..  .  ...+    ++.++++..++.+       .+.........+||||
T Consensus        81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G  153 (253)
T PRK14267         81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWD-------EVKDRLNDYPSNLSGG  153 (253)
T ss_pred             HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCcc-------chhhhhccChhhCCHH
Confidence            5678899999999999986 99999987531  1  0122    2223333322211       1223456678899999


Q ss_pred             HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          404 QKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       404 q~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++
T Consensus       154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  228 (253)
T PRK14267        154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIE  228 (253)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEE
Confidence            999999999999999999999999999999999999999988667899999999998765 99999999999975

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.4e-45  Score=363.76  Aligned_cols=209  Identities=26%  Similarity=0.507  Sum_probs=177.1

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecC--CCCHHHhhc
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLK--EFQLKWIRG  337 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~--~~~~~~~r~  337 (478)
                      -++++|++|+|++  ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.  ..+...+|+
T Consensus         5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~   82 (283)
T PRK13636          5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE   82 (283)
T ss_pred             eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence            4899999999963  246999999999999999999999999999999999999999999999999984  344567888


Q ss_pred             ceEEEecCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556          338 KIGLVSQEP--VLFTSSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA  413 (478)
Q Consensus       338 ~i~~v~Q~~--~lf~~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa  413 (478)
                      .++|+||++  .+|+.|++||+.++..  ..+.++..+.     +.+.++.+  |+.........+|||||+||++||||
T Consensus        83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~LS~G~~qrl~lara  155 (283)
T PRK13636         83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR-----VDNALKRT--GIEHLKDKPTHCLSFGQKKRVAIAGV  155 (283)
T ss_pred             hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHH-----HHHHHHHC--CChhhhhCCcccCCHHHHHHHHHHHH
Confidence            999999998  5678899999987532  1232222221     22333443  56556667789999999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEee
Q 048556          414 ILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVR-NADLIAVIHQGKLVE  477 (478)
Q Consensus       414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~  477 (478)
                      |+.+|+++||||||++||+.+.+.+.+.|+++.+  ++|+|++||+++.+. .||++++|++|++++
T Consensus       156 L~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~  222 (283)
T PRK13636        156 LVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVIL  222 (283)
T ss_pred             HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999988753  789999999999987 499999999999975

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.6e-45  Score=361.42  Aligned_cols=210  Identities=30%  Similarity=0.577  Sum_probs=178.8

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      -++++|++++|++. ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+.+
T Consensus         7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i   85 (271)
T PRK13632          7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI   85 (271)
T ss_pred             EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence            48999999999632 35799999999999999999999999999999999999999999999999999877777888999


Q ss_pred             EEEecCCC--CCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556          340 GLVSQEPV--LFTSSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL  415 (478)
Q Consensus       340 ~~v~Q~~~--lf~~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall  415 (478)
                      +|+||++.  ++..|++||+.++...  .+.++..+     .+.+.++.+  |++..+.....+|||||+||++|||||+
T Consensus        86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~  158 (271)
T PRK13632         86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKD-----IIDDLAKKV--GMEDYLDKEPQNLSGGQKQRVAIASVLA  158 (271)
T ss_pred             EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCCcccCCHHHHHHHHHHHHHH
Confidence            99999983  4567999999875321  22222221     123344444  5666666777899999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          416 KDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      .+|+++||||||++||+.+++.+.+.|+++.+  ++|+|++||+++.+..||++++|++|++++
T Consensus       159 ~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~  222 (271)
T PRK13632        159 LNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIA  222 (271)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEE
Confidence            99999999999999999999999999998753  489999999999988899999999999864

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=2.1e-45  Score=355.82  Aligned_cols=207  Identities=32%  Similarity=0.551  Sum_probs=177.2

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCC--CHHHhhcc
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEF--QLKWIRGK  338 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~--~~~~~r~~  338 (478)
                      ++++|+++.|++   +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...  +...+++.
T Consensus         2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   78 (240)
T PRK09493          2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE   78 (240)
T ss_pred             EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence            689999999963   4699999999999999999999999999999999999999999999999998764  33566888


Q ss_pred             eEEEecCCCCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 048556          339 IGLVSQEPVLFTS-SIKDNINYGKD---GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI  414 (478)
Q Consensus       339 i~~v~Q~~~lf~~-ti~eNl~~~~~---~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal  414 (478)
                      ++|+||++.+|.. |++||+.++..   ..+.++..     ..+.++++.+  |++.........|||||+||++||||+
T Consensus        79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al  151 (240)
T PRK09493         79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAE-----KQARELLAKV--GLAERAHHYPSELSGGQQQRVAIARAL  151 (240)
T ss_pred             eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHH-----HHHHHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHH
Confidence            9999999998874 99999987531   11222211     1224455555  677677778899999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          415 LKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +++|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus       152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  216 (240)
T PRK09493        152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAE  216 (240)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence            99999999999999999999999999998875 47899999999999865 99999999999975

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.2e-45  Score=361.01  Aligned_cols=211  Identities=30%  Similarity=0.521  Sum_probs=177.1

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      -++++||+++|++....++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.+
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i   83 (277)
T PRK13642          4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI   83 (277)
T ss_pred             eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence            38999999999743234699999999999999999999999999999999999999999999999999877777788999


Q ss_pred             EEEecCCC--CCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556          340 GLVSQEPV--LFTSSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL  415 (478)
Q Consensus       340 ~~v~Q~~~--lf~~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall  415 (478)
                      +|++|++.  ++..|+.||+.++..  ..+.++..+.     +.+.++.+  |+..........|||||+||++|||||+
T Consensus        84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lAraL~  156 (277)
T PRK13642         84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR-----VDEALLAV--NMLDFKTREPARLSGGQKQRVAVAGIIA  156 (277)
T ss_pred             EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHC--CCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence            99999984  567799999987532  2233332211     11222222  3444445567899999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          416 KDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      ++|+++||||||++||+.+.+.+.+.|+++.+  ++|+|++||+++.+..||+|++|++|++++
T Consensus       157 ~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~  220 (277)
T PRK13642        157 LRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIK  220 (277)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999988753  689999999999988899999999999875

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=100.00  E-value=1e-45  Score=351.57  Aligned_cols=199  Identities=29%  Similarity=0.485  Sum_probs=165.4

Q ss_pred             EEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEE
Q 048556          262 ELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGL  341 (478)
Q Consensus       262 ~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~  341 (478)
                      +++|++++|++   +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.     .+++.++|
T Consensus         1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~   72 (213)
T cd03235           1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY   72 (213)
T ss_pred             CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence            36899999963   46999999999999999999999999999999999999999999999998764     46778999


Q ss_pred             EecCCCC---CcccHHHHHhcCCCCC------CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048556          342 VSQEPVL---FTSSIKDNINYGKDGA------SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR  412 (478)
Q Consensus       342 v~Q~~~l---f~~ti~eNl~~~~~~~------~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lAR  412 (478)
                      +||++.+   |+.|++||+.++....      ..++.     ...+.++++.+  |++........+||||||||++|||
T Consensus        73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~  145 (213)
T cd03235          73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKAD-----KAKVDEALERV--GLSELADRQIGELSGGQQQRVLLAR  145 (213)
T ss_pred             eccccccccCCCCcHHHHHHhccccccccccCCCHHH-----HHHHHHHHHHc--CCHHHHhCCcccCCHHHHHHHHHHH
Confidence            9999976   5579999998864311      01111     11123334443  4544455567899999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 048556          413 AILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKL  475 (478)
Q Consensus       413 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i  475 (478)
                      ||+.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|.+
T Consensus       146 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~~~  210 (213)
T cd03235         146 ALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV  210 (213)
T ss_pred             HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCcEe
Confidence            9999999999999999999999999999999875 56899999999998866 899999998744

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=100.00  E-value=1.1e-45  Score=375.35  Aligned_cols=195  Identities=34%  Similarity=0.535  Sum_probs=168.3

Q ss_pred             CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh----hcceEEEecCCCCCcc
Q 048556          276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI----RGKIGLVSQEPVLFTS  351 (478)
Q Consensus       276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~----r~~i~~v~Q~~~lf~~  351 (478)
                      +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++..++..++    |+.++||+|++.+|+.
T Consensus         6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~   85 (363)
T TIGR01186         6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH   85 (363)
T ss_pred             ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence            469999999999999999999999999999999999999999999999999999988777    7899999999999986


Q ss_pred             -cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCC
Q 048556          352 -SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS  428 (478)
Q Consensus       352 -ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts  428 (478)
                       |++||+.++...  .+.++..+     .+.+.++.+  |++...+..+.+||||||||++|||||+.+|+++|||||||
T Consensus        86 ~TV~eNi~~~~~~~~~~~~~~~~-----~~~~~l~~v--gL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~s  158 (363)
T TIGR01186        86 MTILQNTSLGPELLGWPEQERKE-----KALELLKLV--GLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFS  158 (363)
T ss_pred             CCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhc--CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence             999999986432  12222211     122333333  56666677788999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          429 ALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       429 ~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +||+.+++.+.+.+.++.  .++|+|+|||+++.+.. ||+|++|++|++++
T Consensus       159 aLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~  210 (363)
T TIGR01186       159 ALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQ  210 (363)
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEe
Confidence            999999999999998874  37899999999998655 99999999999975

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=100.00  E-value=4e-45  Score=346.97  Aligned_cols=199  Identities=31%  Similarity=0.522  Sum_probs=168.5

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      |+++|++++|++   ..  .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.  .++.++
T Consensus         1 i~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~   73 (211)
T cd03298           1 VRLDKIRFSYGE---QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS   73 (211)
T ss_pred             CEEEeEEEEeCC---Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence            478999999963   22  39999999999999999999999999999999999999999999999877654  357899


Q ss_pred             EEecCCCCCcc-cHHHHHhcCCC-CC-----CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556          341 LVSQEPVLFTS-SIKDNINYGKD-GA-----SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA  413 (478)
Q Consensus       341 ~v~Q~~~lf~~-ti~eNl~~~~~-~~-----~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa  413 (478)
                      |++|++.+|++ |++||+.++.. ..     .++++.++++..+           ++........+||||||||++||||
T Consensus        74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~ia~a  142 (211)
T cd03298          74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVG-----------LAGLEKRLPGELSGGERQRVALARV  142 (211)
T ss_pred             EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcC-----------CHHHHhCCcccCCHHHHHHHHHHHH
Confidence            99999999986 99999987642 11     1223334444443           4444445567899999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          414 ILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ++.+|+++||||||++||+.+++.+.+.|+++.+  ++|+|++||+++.+.. ||++++|++|++++
T Consensus       143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~  209 (211)
T cd03298         143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAA  209 (211)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEee
Confidence            9999999999999999999999999999998753  6899999999999866 99999999999976

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.4e-45  Score=358.69  Aligned_cols=204  Identities=34%  Similarity=0.496  Sum_probs=172.4

Q ss_pred             ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC-----CCccEEEECCeecCC--CC
Q 048556          259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGVNLKE--FQ  331 (478)
Q Consensus       259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~--~~  331 (478)
                      ..++++||+++|++   +++|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|.++..  .+
T Consensus        12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~   88 (269)
T PRK14259         12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD   88 (269)
T ss_pred             ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence            35999999999963   469999999999999999999999999999999999987     689999999999853  45


Q ss_pred             HHHhhcceEEEecCCCCCcccHHHHHhcCCCCC--C---HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHH
Q 048556          332 LKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGA--S---IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQ  406 (478)
Q Consensus       332 ~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~--~---~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Q  406 (478)
                      ..++|+.++|+||++.+|+.|++||+.++....  .   ++++.++++..++.       .+++........+|||||||
T Consensus        89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~l~~~~~~~~~~LS~G~~q  161 (269)
T PRK14259         89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVW-------DECKDKLNESGYSLSGGQQQ  161 (269)
T ss_pred             HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCc-------chhhhhhCCCcccCCHHHHH
Confidence            667788999999999999889999999864211  1   12223333333222       23344566778899999999


Q ss_pred             HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeC
Q 048556          407 RIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQ  472 (478)
Q Consensus       407 rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~  472 (478)
                      |++|||||+++|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++
T Consensus       162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~  228 (269)
T PRK14259        162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNA  228 (269)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEec
Confidence            999999999999999999999999999999999999988767899999999998865 999999996

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=100.00  E-value=2.3e-45  Score=373.94  Aligned_cols=207  Identities=31%  Similarity=0.508  Sum_probs=178.4

Q ss_pred             ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCc--cEEEECCeecCCCCHHHhh
Q 048556          259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA--GEVLIDGVNLKEFQLKWIR  336 (478)
Q Consensus       259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~--G~i~~~g~~~~~~~~~~~r  336 (478)
                      +.++++|++++|++   .++|+|+||+|++||+++|+||||||||||+++|+|+++|++  |+|.++|.++...+..  +
T Consensus         4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~--~   78 (362)
T TIGR03258         4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH--K   78 (362)
T ss_pred             eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHH--H
Confidence            56999999999963   469999999999999999999999999999999999999999  9999999999876653  5


Q ss_pred             cceEEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556          337 GKIGLVSQEPVLFTS-SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA  413 (478)
Q Consensus       337 ~~i~~v~Q~~~lf~~-ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa  413 (478)
                      +.++||+|++.+|+. |++||+.++...  .+.++..+     .+.++++.+  |++........+||||||||++||||
T Consensus        79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~-----~v~~~l~~~--gL~~~~~~~~~~LSgGq~QRvaLARA  151 (362)
T TIGR03258        79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAE-----RVADALKLV--GLGDAAAHLPAQLSGGMQQRIAIARA  151 (362)
T ss_pred             CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhc--CCCchhhCChhhCCHHHHHHHHHHHH
Confidence            789999999999987 999999986421  22222222     123444444  66666777888999999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC---CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          414 ILKDPRILLLDEATSALDAESERVVQEALDKIMI---NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~---~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |+.+|++||||||||+||+.+++.+.+.|+++.+   +.|+|+|||+++.+.. ||+|++|++|++++
T Consensus       152 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~  219 (362)
T TIGR03258       152 IAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAA  219 (362)
T ss_pred             HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999988754   5799999999998765 99999999999975

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3e-45  Score=365.96  Aligned_cols=210  Identities=30%  Similarity=0.485  Sum_probs=175.1

Q ss_pred             EEEEeEEEECCCCC--CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCC---------
Q 048556          261 IELKDIYFSYPSRP--GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE---------  329 (478)
Q Consensus       261 i~~~~v~~~y~~~~--~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~---------  329 (478)
                      |+++|++|+|++..  ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..         
T Consensus         3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~   82 (305)
T PRK13651          3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK   82 (305)
T ss_pred             EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence            78999999997431  1369999999999999999999999999999999999999999999999887532         


Q ss_pred             ---------------CCHHHhhcceEEEecCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCcc
Q 048556          330 ---------------FQLKWIRGKIGLVSQEP--VLFTSSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLD  390 (478)
Q Consensus       330 ---------------~~~~~~r~~i~~v~Q~~--~lf~~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~  390 (478)
                                     .+...+++.++||||+|  .+|..|++||+.++..  ..+.++..+.     +.+.++.+  |++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~  155 (305)
T PRK13651         83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKR-----AAKYIELV--GLD  155 (305)
T ss_pred             cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCC
Confidence                           13456788999999986  6788899999998742  2233333221     22344444  564


Q ss_pred             -ccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEE
Q 048556          391 -TMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVR-NADLI  467 (478)
Q Consensus       391 -t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i  467 (478)
                       ........+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+. .||||
T Consensus       156 ~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv  235 (305)
T PRK13651        156 ESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRT  235 (305)
T ss_pred             hhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEE
Confidence             45667889999999999999999999999999999999999999999999998875 4789999999999765 59999


Q ss_pred             EEEeCCEEee
Q 048556          468 AVIHQGKLVE  477 (478)
Q Consensus       468 ~vl~~G~i~~  477 (478)
                      ++|++|++++
T Consensus       236 ~vl~~G~i~~  245 (305)
T PRK13651        236 IFFKDGKIIK  245 (305)
T ss_pred             EEEECCEEEE
Confidence            9999999975

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=100.00  E-value=2.5e-45  Score=377.27  Aligned_cols=204  Identities=26%  Similarity=0.483  Sum_probs=177.7

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      -++++|++++|++   +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.+++.+++++++
T Consensus         3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i   79 (402)
T PRK09536          3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV   79 (402)
T ss_pred             eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence            3889999999963   4799999999999999999999999999999999999999999999999999999888899999


Q ss_pred             EEEecCCCC-CcccHHHHHhcCCCCC-------C---HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 048556          340 GLVSQEPVL-FTSSIKDNINYGKDGA-------S---IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRI  408 (478)
Q Consensus       340 ~~v~Q~~~l-f~~ti~eNl~~~~~~~-------~---~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl  408 (478)
                      +||+|++.+ |+.|++||+.++...+       +   .+++.++++..           |+.........+||||||||+
T Consensus        80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~v-----------gl~~~~~~~~~~LSgGerQRv  148 (402)
T PRK09536         80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERT-----------GVAQFADRPVTSLSGGERQRV  148 (402)
T ss_pred             EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHHH
Confidence            999999987 4669999999875211       1   12334444444           444444556789999999999


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          409 AIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       409 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +|||||+++|++|||||||++||+.++..+++.|+++. +++|+|++||+++.+.. |||+++|++|++++
T Consensus       149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~  219 (402)
T PRK09536        149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRA  219 (402)
T ss_pred             HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999886 47899999999999855 99999999999875

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.1e-45  Score=360.05  Aligned_cols=210  Identities=33%  Similarity=0.564  Sum_probs=176.3

Q ss_pred             EEEEeEEEECCCCC--CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCC----CHHH
Q 048556          261 IELKDIYFSYPSRP--GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEF----QLKW  334 (478)
Q Consensus       261 i~~~~v~~~y~~~~--~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~----~~~~  334 (478)
                      ++++||+|+|++..  .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...    +...
T Consensus         3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   82 (280)
T PRK13649          3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ   82 (280)
T ss_pred             EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence            78999999997421  13699999999999999999999999999999999999999999999999998754    3466


Q ss_pred             hhcceEEEecCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHH
Q 048556          335 IRGKIGLVSQEP--VLFTSSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQKQRIA  409 (478)
Q Consensus       335 ~r~~i~~v~Q~~--~lf~~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~Qrl~  409 (478)
                      +|+.++|+||++  .+|+.|++||+.++..  ..+.++..+.     +.++++.+  |++ ........+||||||||++
T Consensus        83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~  155 (280)
T PRK13649         83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEAL-----AREKLALV--GISESLFEKNPFELSGGQMRRVA  155 (280)
T ss_pred             HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence            788899999997  5788899999987531  1233332221     23344444  564 3456778899999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          410 IARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       410 lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |||||+.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus       156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~  225 (280)
T PRK13649        156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVL  225 (280)
T ss_pred             HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999998875 36899999999998865 99999999999874

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=100.00  E-value=3.6e-45  Score=373.88  Aligned_cols=206  Identities=32%  Similarity=0.531  Sum_probs=175.0

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      .++++|++++|++   .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..  ++.+
T Consensus        14 ~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i   88 (375)
T PRK09452         14 LVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV   88 (375)
T ss_pred             eEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence            5899999999963   4699999999999999999999999999999999999999999999999999877654  4789


Q ss_pred             EEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556          340 GLVSQEPVLFTS-SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK  416 (478)
Q Consensus       340 ~~v~Q~~~lf~~-ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~  416 (478)
                      +||+|++.+|+. |++||+.++...  .+.++..+     .+.+.++.+  |++........+|||||+||++|||||++
T Consensus        89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~p~~LSgGq~QRVaLARaL~~  161 (375)
T PRK09452         89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITP-----RVMEALRMV--QLEEFAQRKPHQLSGGQQQRVAIARAVVN  161 (375)
T ss_pred             EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHHHhc
Confidence            999999999987 999999987421  12222211     112233333  45555556678999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +|++||||||||+||+.+++.+.+.|+++.+  +.|+|+|||++..+.. ||+|++|++|++++
T Consensus       162 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~  225 (375)
T PRK09452        162 KPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQ  225 (375)
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999998753  6899999999998655 99999999999975

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3e-45  Score=359.88  Aligned_cols=204  Identities=27%  Similarity=0.480  Sum_probs=175.1

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      .++++|++++|++   +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.+
T Consensus        11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i   87 (265)
T PRK10575         11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV   87 (265)
T ss_pred             eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence            4899999999963   4799999999999999999999999999999999999999999999999999888888888899


Q ss_pred             EEEecCCCCCcc-cHHHHHhcCCCCC----------CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 048556          340 GLVSQEPVLFTS-SIKDNINYGKDGA----------SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRI  408 (478)
Q Consensus       340 ~~v~Q~~~lf~~-ti~eNl~~~~~~~----------~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl  408 (478)
                      +|+||++.++.+ |+.||+.++....          .++++.++++..           |++........+|||||+||+
T Consensus        88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~~qrv  156 (265)
T PRK10575         88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLV-----------GLKPLAHRLVDSLSGGERQRA  156 (265)
T ss_pred             EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHc-----------CCHHHhcCCcccCCHHHHHHH
Confidence            999999877765 9999999753210          112233333333           344444455678999999999


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          409 AIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       409 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +||||++.+|+++||||||++||+.+.+.+.+.|+++.+  ++|+|++||+++.+.. ||++++|++|++++
T Consensus       157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~  228 (265)
T PRK10575        157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIA  228 (265)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence            999999999999999999999999999999999988753  6899999999998865 99999999999874

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=100.00  E-value=2.5e-45  Score=361.20  Aligned_cols=208  Identities=27%  Similarity=0.468  Sum_probs=175.2

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHH---Hhh
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLK---WIR  336 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~---~~r  336 (478)
                      -|+++|++++|++   +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++..   .++
T Consensus         7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~   83 (269)
T PRK11831          7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR   83 (269)
T ss_pred             eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence            4899999999963   4799999999999999999999999999999999999999999999999998776543   357


Q ss_pred             cceEEEecCCCCCcc-cHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048556          337 GKIGLVSQEPVLFTS-SIKDNINYGKDG---ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR  412 (478)
Q Consensus       337 ~~i~~v~Q~~~lf~~-ti~eNl~~~~~~---~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lAR  412 (478)
                      +.++|+||++.+|++ |++||+.++...   .+.++..     ..+.+.++.+  |+.........+||||||||++|||
T Consensus        84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgGq~qrv~lar  156 (269)
T PRK11831         84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLH-----STVMMKLEAV--GLRGAAKLMPSELSGGMARRAALAR  156 (269)
T ss_pred             hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence            789999999999986 999999874211   1111111     1122334444  5555566677899999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          413 AILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       413 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||+.+|+++||||||++||+.+.+.+.+.|+++.+  ++|+|++||+++.+.. ||++++|++|++++
T Consensus       157 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~  224 (269)
T PRK11831        157 AIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVA  224 (269)
T ss_pred             HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEE
Confidence            99999999999999999999999999999998753  6899999999998866 99999999999874

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=100.00  E-value=2.8e-45  Score=357.03  Aligned_cols=207  Identities=34%  Similarity=0.562  Sum_probs=175.8

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC--------H
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ--------L  332 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~--------~  332 (478)
                      ++++|++++|++   +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+        .
T Consensus         4 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   80 (250)
T PRK11264          4 IEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI   80 (250)
T ss_pred             EEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence            789999999963   46999999999999999999999999999999999999999999999999986542        3


Q ss_pred             HHhhcceEEEecCCCCCc-ccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 048556          333 KWIRGKIGLVSQEPVLFT-SSIKDNINYGK---DGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRI  408 (478)
Q Consensus       333 ~~~r~~i~~v~Q~~~lf~-~ti~eNl~~~~---~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl  408 (478)
                      ..+++.++|+||++.+|+ .|++||+.++.   .....++..+     .+.+.++.+  |++......+.+||||||||+
T Consensus        81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~Gq~qrv  153 (250)
T PRK11264         81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATA-----RARELLAKV--GLAGKETSYPRRLSGGQQQRV  153 (250)
T ss_pred             HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCcchhhCChhhCChHHHHHH
Confidence            456788999999999886 59999998642   1112222111     123455554  666666778899999999999


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          409 AIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       409 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +|||||+.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus       154 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~  224 (250)
T PRK11264        154 AIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVE  224 (250)
T ss_pred             HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence            99999999999999999999999999999999998875 47899999999999866 99999999999875

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.1e-45  Score=353.94  Aligned_cols=207  Identities=24%  Similarity=0.447  Sum_probs=178.1

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHH-hhcce
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW-IRGKI  339 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~i  339 (478)
                      ++++|++++|++   +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.+
T Consensus         4 l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i   80 (241)
T PRK10895          4 LTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI   80 (241)
T ss_pred             EEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence            789999999963   47999999999999999999999999999999999999999999999999998777544 56789


Q ss_pred             EEEecCCCCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556          340 GLVSQEPVLFTS-SIKDNINYGKD---GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL  415 (478)
Q Consensus       340 ~~v~Q~~~lf~~-ti~eNl~~~~~---~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall  415 (478)
                      +|+||++.+|++ |++||+.++..   ..+.++     ....+.++++.+  |++........+|||||+||++||||++
T Consensus        81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~  153 (241)
T PRK10895         81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQ-----REDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARALA  153 (241)
T ss_pred             EEeccCCcccccCcHHHHHhhhhhcccccCHHH-----HHHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHHh
Confidence            999999999985 99999987532   112221     122334566666  6776677788999999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          416 KDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ++|+++||||||++||+.+++.+.+.++++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus       154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~  217 (241)
T PRK10895        154 ANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIA  217 (241)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEe
Confidence            9999999999999999999999999998875 47899999999987755 99999999999875

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.7e-45  Score=360.02  Aligned_cols=208  Identities=32%  Similarity=0.571  Sum_probs=176.7

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC-HHHhhcce
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ-LKWIRGKI  339 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~-~~~~r~~i  339 (478)
                      ++++|++++|++  ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus         2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i   79 (274)
T PRK13644          2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV   79 (274)
T ss_pred             EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence            689999999963  246999999999999999999999999999999999999999999999999997765 35678899


Q ss_pred             EEEecCCC--CCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556          340 GLVSQEPV--LFTSSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL  415 (478)
Q Consensus       340 ~~v~Q~~~--lf~~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall  415 (478)
                      +|+||++.  ++..|++||+.++...  .+.++..+.     +.+.++.+  |++......+..|||||+||++|||||+
T Consensus        80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~laral~  152 (274)
T PRK13644         80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKR-----VDRALAEI--GLEKYRHRSPKTLSGGQGQCVALAGILT  152 (274)
T ss_pred             EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHC--CCHHHhcCCcccCCHHHHHHHHHHHHHH
Confidence            99999985  5667999999876422  222222211     22334444  5666666778899999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          416 KDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      .+|+++||||||++||+.++..+++.|+++. +++|+|++||+++.+..||++++|++|++++
T Consensus       153 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~  215 (274)
T PRK13644        153 MEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVL  215 (274)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEE
Confidence            9999999999999999999999999998875 4789999999999998899999999999874

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.4e-45  Score=358.31  Aligned_cols=210  Identities=29%  Similarity=0.488  Sum_probs=176.9

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      .++++|+++.|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.+
T Consensus         7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i   85 (269)
T PRK13648          7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI   85 (269)
T ss_pred             eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence            48999999999743 24699999999999999999999999999999999999999999999999999888888889999


Q ss_pred             EEEecCCC-CC-cccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556          340 GLVSQEPV-LF-TSSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL  415 (478)
Q Consensus       340 ~~v~Q~~~-lf-~~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall  415 (478)
                      +|+||++. +| ..|+++|+.++...  ...++..+     .+.+.++.+  |+.........+||||||||++||||++
T Consensus        86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~  158 (269)
T PRK13648         86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHR-----RVSEALKQV--DMLERADYEPNALSGGQKQRVAIAGVLA  158 (269)
T ss_pred             eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence            99999985 45 45899999876422  12222211     112233333  4444555677899999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          416 KDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      .+|+++||||||++||+.+++.+.+.|+++.+  ++|+|++||+++.+..||+|++|++|++++
T Consensus       159 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~  222 (269)
T PRK13648        159 LNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYK  222 (269)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEE
Confidence            99999999999999999999999999988753  689999999999988899999999999975

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.8e-45  Score=374.25  Aligned_cols=206  Identities=28%  Similarity=0.480  Sum_probs=175.8

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      .++++|++++|++   .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+..  ++.+
T Consensus         3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i   77 (369)
T PRK11000          3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGV   77 (369)
T ss_pred             EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCE
Confidence            3899999999963   4699999999999999999999999999999999999999999999999999876643  5689


Q ss_pred             EEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556          340 GLVSQEPVLFTS-SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK  416 (478)
Q Consensus       340 ~~v~Q~~~lf~~-ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~  416 (478)
                      +||+|++.+|+. |++||+.++...  .+.++..+     .+.++++.+  |++........+||||||||++|||||+.
T Consensus        78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~l--gL~~~~~~~~~~LSgGq~QRvaLAraL~~  150 (369)
T PRK11000         78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQ-----RVNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVA  150 (369)
T ss_pred             EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhc
Confidence            999999999976 999999986421  22222111     123344444  56666667778999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +|++|||||||++||+.+++.+.+.|+++.+  +.|+|+|||+++.+.. ||+|++|++|++++
T Consensus       151 ~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~  214 (369)
T PRK11000        151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ  214 (369)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999988753  6899999999998765 99999999999875

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.2e-45  Score=355.59  Aligned_cols=213  Identities=23%  Similarity=0.430  Sum_probs=179.1

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh-hcc
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI-RGK  338 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~  338 (478)
                      -++++|+++.|++   +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..
T Consensus         5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (255)
T PRK11300          5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG   81 (255)
T ss_pred             eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence            3899999999963   479999999999999999999999999999999999999999999999999988775554 456


Q ss_pred             eEEEecCCCCCcc-cHHHHHhcCCCCCCH----------HHH--HHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556          339 IGLVSQEPVLFTS-SIKDNINYGKDGASI----------AEI--MAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK  405 (478)
Q Consensus       339 i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~----------~~~--~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~  405 (478)
                      ++|+||++.+|++ |++||+.++.....+          ...  ........+.++++.+  |++........+||||||
T Consensus        82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~  159 (255)
T PRK11300         82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV--GLLEHANRQAGNLAYGQQ  159 (255)
T ss_pred             eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC--ChhhhhhCChhhCCHHHH
Confidence            9999999999986 999999985311000          000  0001112234556665  777778888999999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||++||||++.+|+++||||||++||+.+++.+.+.|.++.+  ++|+|++||+++.+.. ||++++|++|++++
T Consensus       160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~  234 (255)
T PRK11300        160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLA  234 (255)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEe
Confidence            999999999999999999999999999999999999988753  6899999999999866 99999999999874

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=100.00  E-value=3.8e-45  Score=365.78  Aligned_cols=207  Identities=27%  Similarity=0.463  Sum_probs=174.0

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      -|+++|++++|++   .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|+.+
T Consensus         4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-~~~~~~i   79 (303)
T TIGR01288         4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRA-RLARVAI   79 (303)
T ss_pred             EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccH-HHHhhcE
Confidence            4899999999963   46999999999999999999999999999999999999999999999999986543 5568899


Q ss_pred             EEEecCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556          340 GLVSQEPVLFT-SSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK  416 (478)
Q Consensus       340 ~~v~Q~~~lf~-~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~  416 (478)
                      +|+||++.+|+ .|++||+.+...  ..+.++..+.+     .++++.+  |+.........+||||||||++|||||+.
T Consensus        80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~ll~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~  152 (303)
T TIGR01288        80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVI-----PSLLEFA--RLESKADVRVALLSGGMKRRLTLARALIN  152 (303)
T ss_pred             EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHC--CChhHhcCchhhCCHHHHHHHHHHHHHhc
Confidence            99999999886 499999985321  12222222211     2233333  45445556678899999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +|+++||||||++||+.+++.+++.|+++. +++|+|++||+++.+.. ||+|++|++|++++
T Consensus       153 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~  215 (303)
T TIGR01288       153 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIA  215 (303)
T ss_pred             CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999999875 47899999999999876 99999999999874

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.6e-45  Score=356.75  Aligned_cols=207  Identities=33%  Similarity=0.553  Sum_probs=176.0

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC---------
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ---------  331 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~---------  331 (478)
                      |+++||++.|++   .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++         
T Consensus         1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~   77 (252)
T TIGR03005         1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA   77 (252)
T ss_pred             CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence            578999999963   47999999999999999999999999999999999999999999999999987543         


Q ss_pred             ----HHHhhcceEEEecCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChH
Q 048556          332 ----LKWIRGKIGLVSQEPVLFT-SSIKDNINYGKD---GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGG  403 (478)
Q Consensus       332 ----~~~~r~~i~~v~Q~~~lf~-~ti~eNl~~~~~---~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgG  403 (478)
                          ...+++.++|++|++.+|+ .|++||+.++..   ....++..     ..+.+.++.+  |++..+...+.+||||
T Consensus        78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G  150 (252)
T TIGR03005        78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAE-----KRAMELLDMV--GLADKADHMPAQLSGG  150 (252)
T ss_pred             chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhHhhcChhhcCHH
Confidence                2456889999999999886 599999987521   11222211     1234455555  6666677778999999


Q ss_pred             HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          404 QKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       404 q~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |+||++|||||+.+|+++||||||++||+.++..+.+.|+++.+  ++|+|++||+++.+.. ||++++|++|++++
T Consensus       151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~  227 (252)
T TIGR03005       151 QQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE  227 (252)
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999988753  6899999999999855 99999999999975

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=100.00  E-value=2.5e-44  Score=355.04  Aligned_cols=222  Identities=27%  Similarity=0.438  Sum_probs=189.2

Q ss_pred             HHHHHHccCCCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhcc
Q 048556          233 KLFEAIERKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       233 ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      .+.+++..++++..    ..+.+.....|+++|+++..     +++|+|+||+|++||+++|+||||||||||+++|+|+
T Consensus        16 ~~~~~~~~~~~~~~----~~~~~~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl   86 (282)
T cd03291          16 GFGELLEKAKQENN----DRKHSSDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE   86 (282)
T ss_pred             HHHHHHhccccccc----ccccCCCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34555655443221    22233444679999999952     3699999999999999999999999999999999999


Q ss_pred             CCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcccc
Q 048556          313 YDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTM  392 (478)
Q Consensus       313 ~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~  392 (478)
                      ++|++|+|.++|             .++|+||++.+|++|++||+.++.. ....+..++++..++.+++..+|.++++.
T Consensus        87 ~~p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~  152 (282)
T cd03291          87 LEPSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNTV  152 (282)
T ss_pred             CCCCCcEEEECC-------------EEEEEeCcccccccCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccce
Confidence            999999999988             3999999999999999999998643 23345556677778888999999999999


Q ss_pred             ccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhcCCCeEEEEecCchhhhhcCEEEEEe
Q 048556          393 VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEAL-DKIMINRTTVIVAHRLSTVRNADLIAVIH  471 (478)
Q Consensus       393 ~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l-~~~~~~~t~i~itH~~~~~~~~d~i~vl~  471 (478)
                      +++.+..|||||+||++|||||+.+|+++||||||++||+.++..+.+.+ +...+++|+|++||+++.+..||++++|+
T Consensus       153 ~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~  232 (282)
T cd03291         153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH  232 (282)
T ss_pred             ecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEE
Confidence            99999999999999999999999999999999999999999999998864 55556789999999999998899999999


Q ss_pred             CCEEee
Q 048556          472 QGKLVE  477 (478)
Q Consensus       472 ~G~i~~  477 (478)
                      +|++++
T Consensus       233 ~G~i~~  238 (282)
T cd03291         233 EGSSYF  238 (282)
T ss_pred             CCEEEE
Confidence            999864

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=100.00  E-value=1.9e-45  Score=361.89  Aligned_cols=206  Identities=34%  Similarity=0.518  Sum_probs=170.6

Q ss_pred             EEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh----hc
Q 048556          262 ELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI----RG  337 (478)
Q Consensus       262 ~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~----r~  337 (478)
                      .++|+++.|++   .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+    ++
T Consensus        26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~  102 (269)
T cd03294          26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK  102 (269)
T ss_pred             hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence            56788888853   469999999999999999999999999999999999999999999999999887765443    46


Q ss_pred             ceEEEecCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 048556          338 KIGLVSQEPVLFT-SSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI  414 (478)
Q Consensus       338 ~i~~v~Q~~~lf~-~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal  414 (478)
                      +++|+||++.+|+ .|++||+.++...  ...++..     ..+.+.++.+  |++..+.....+||||||||++||||+
T Consensus       103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrv~lAral  175 (269)
T cd03294         103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAERE-----ERAAEALELV--GLEGWEHKYPDELSGGMQQRVGLARAL  175 (269)
T ss_pred             cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence            7999999999986 5999999875311  1111111     1122334443  455555566678999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          415 LKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +++|+++||||||++||+.+++.+.+.|+++.+  ++|+|++||+++.+.. ||++++|++|++++
T Consensus       176 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~  241 (269)
T cd03294         176 AVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQ  241 (269)
T ss_pred             hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence            999999999999999999999999999988742  6899999999998765 99999999999875

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.9e-45  Score=356.38  Aligned_cols=207  Identities=26%  Similarity=0.469  Sum_probs=175.4

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++|++++|++   +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++
T Consensus         3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~   79 (255)
T PRK11231          3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA   79 (255)
T ss_pred             EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence            789999999963   47999999999999999999999999999999999999999999999999998888778888899


Q ss_pred             EEecCCCCCcc-cHHHHHhcCCCCC----C--HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556          341 LVSQEPVLFTS-SIKDNINYGKDGA----S--IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA  413 (478)
Q Consensus       341 ~v~Q~~~lf~~-ti~eNl~~~~~~~----~--~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa  413 (478)
                      |+||++.+|.+ |++||+.++....    .  .++.     ...+.+.++.+  |++.........|||||+||++||||
T Consensus        80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lara  152 (255)
T PRK11231         80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAED-----NARVNQAMEQT--RINHLADRRLTDLSGGQRQRAFLAMV  152 (255)
T ss_pred             EecccCCCCCCccHHHHHHhccchhhhhccCCCHHH-----HHHHHHHHHHc--CCHHHHcCCcccCCHHHHHHHHHHHH
Confidence            99999998877 9999999863210    0  0110     01112233332  45445556778999999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          414 ILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ++.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus       153 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~  218 (255)
T PRK11231        153 LAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMA  218 (255)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEE
Confidence            999999999999999999999999999998875 47899999999998765 99999999999864

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.9e-45  Score=354.36  Aligned_cols=207  Identities=31%  Similarity=0.527  Sum_probs=176.3

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecC------CCCHHH
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLK------EFQLKW  334 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~------~~~~~~  334 (478)
                      ++++|+++.|++   +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.      ..+...
T Consensus         3 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   79 (242)
T PRK11124          3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE   79 (242)
T ss_pred             EEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence            789999999963   47999999999999999999999999999999999999999999999999873      123456


Q ss_pred             hhcceEEEecCCCCCcc-cHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 048556          335 IRGKIGLVSQEPVLFTS-SIKDNINYGK---DGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAI  410 (478)
Q Consensus       335 ~r~~i~~v~Q~~~lf~~-ti~eNl~~~~---~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~l  410 (478)
                      +|+.++|+||++.+|++ |++||+.++.   .....++..     ..+.++++.+  |++..+.....+||||||||++|
T Consensus        80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~l  152 (242)
T PRK11124         80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQAL-----ARAEKLLERL--RLKPYADRFPLHLSGGQQQRVAI  152 (242)
T ss_pred             HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHH
Confidence            78899999999999976 9999997531   111222211     1234556655  67777777888999999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          411 ARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       411 ARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |||++++|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++
T Consensus       153 aral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~  221 (242)
T PRK11124        153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVE  221 (242)
T ss_pred             HHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence            999999999999999999999999999999999875 37899999999999865 99999999999875

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.5e-45  Score=362.34  Aligned_cols=212  Identities=29%  Similarity=0.510  Sum_probs=174.6

Q ss_pred             ccEEEEeEEEECCCCC--CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCC----C-C
Q 048556          259 GDIELKDIYFSYPSRP--GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE----F-Q  331 (478)
Q Consensus       259 ~~i~~~~v~~~y~~~~--~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~----~-~  331 (478)
                      +.|+++|++++|++++  ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..    . +
T Consensus         5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~   84 (289)
T PRK13645          5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE   84 (289)
T ss_pred             ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence            4699999999996431  1359999999999999999999999999999999999999999999999998752    1 3


Q ss_pred             HHHhhcceEEEecCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHH
Q 048556          332 LKWIRGKIGLVSQEP--VLFTSSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQKQ  406 (478)
Q Consensus       332 ~~~~r~~i~~v~Q~~--~lf~~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~Q  406 (478)
                      ...+|+.++|+||++  .+|..|++||+.++..  ....++..+.     +.+.++.+  |+. ........+|||||||
T Consensus        85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~ll~~~--~L~~~~~~~~~~~LS~Gq~q  157 (289)
T PRK13645         85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKK-----VPELLKLV--QLPEDYVKRSPFELSGGQKR  157 (289)
T ss_pred             HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhHhcCChhhCCHHHHH
Confidence            456788999999998  4677899999987632  1222222221     12233333  442 3456678899999999


Q ss_pred             HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          407 RIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       407 rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |++|||||+.+|++|||||||++||+.+++.+.+.|+++.+  ++|+|++||+++.+.. ||++++|++|++++
T Consensus       158 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~  231 (289)
T PRK13645        158 RVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVIS  231 (289)
T ss_pred             HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999988753  6899999999998755 99999999999875

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.3e-45  Score=358.72  Aligned_cols=208  Identities=33%  Similarity=0.482  Sum_probs=173.0

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC-----CCccEEEECCeecCC--CCH
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGVNLKE--FQL  332 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~--~~~  332 (478)
                      -++++|++++|++   +++|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|.++..  .+.
T Consensus        21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   97 (268)
T PRK14248         21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV   97 (268)
T ss_pred             eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence            4899999999963   469999999999999999999999999999999999864     789999999999864  334


Q ss_pred             HHhhcceEEEecCCCCCcccHHHHHhcCCCCC---CH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556          333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKDGA---SI----AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK  405 (478)
Q Consensus       333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~---~~----~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~  405 (478)
                      ..+++.++|+||++.+|++|++||+.++....   ..    +.+.++++..++.       .++.........+|||||+
T Consensus        98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~~~~~LSgGq~  170 (268)
T PRK14248         98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALW-------DEVKDRLHSSALSLSGGQQ  170 (268)
T ss_pred             HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCC-------cchHHHHhcCcccCCHHHH
Confidence            56788999999999999999999998753111   11    1122222222221       1122345677889999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus       171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~  243 (268)
T PRK14248        171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVE  243 (268)
T ss_pred             HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999988767899999999998765 99999999999875

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.6e-45  Score=353.98  Aligned_cols=208  Identities=34%  Similarity=0.514  Sum_probs=174.0

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----CccEEEECCeecCC--CCH
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGVNLKE--FQL  332 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~~~~--~~~  332 (478)
                      .++++||++.|++   +++++|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|+++..  .+.
T Consensus         3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~   79 (250)
T PRK14240          3 KISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV   79 (250)
T ss_pred             eEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence            5899999999963   4699999999999999999999999999999999999863     68999999999864  345


Q ss_pred             HHhhcceEEEecCCCCCcccHHHHHhcCCCC--C-CH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556          333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKDG--A-SI----AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK  405 (478)
Q Consensus       333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~--~-~~----~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~  405 (478)
                      ..+|+.++|+||++.+|+.|++||+.++...  . ..    +++.++++..++.       +++.......+.+|||||+
T Consensus        80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~l~~~~~~~~~~LS~G~~  152 (250)
T PRK14240         80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALW-------DEVKDRLKKSALGLSGGQQ  152 (250)
T ss_pred             HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc-------hhhHHHHhcCCCCCCHHHH
Confidence            5678899999999999989999999875311  1 11    1222223333222       1223345667889999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus       153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~  225 (250)
T PRK14240        153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVE  225 (250)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999988667899999999998765 99999999999875

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.1e-45  Score=358.03  Aligned_cols=209  Identities=31%  Similarity=0.476  Sum_probs=176.1

Q ss_pred             ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC-----CCccEEEECCeecCC--CC
Q 048556          259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGVNLKE--FQ  331 (478)
Q Consensus       259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~--~~  331 (478)
                      ..++++|++++|++   +++|+|+||++++||+++|+||||||||||+++|+|+++     |++|+|.+||.++..  .+
T Consensus        19 ~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~   95 (267)
T PRK14237         19 IALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN   95 (267)
T ss_pred             eEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence            46999999999953   579999999999999999999999999999999999996     579999999999864  34


Q ss_pred             HHHhhcceEEEecCCCCCcccHHHHHhcCCCC--C-CH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHH
Q 048556          332 LKWIRGKIGLVSQEPVLFTSSIKDNINYGKDG--A-SI----AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQ  404 (478)
Q Consensus       332 ~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~--~-~~----~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq  404 (478)
                      ...+++.++|+||++.+|..|++||+.++...  . ..    +++.++++..++.+       ++++.++..+.+|||||
T Consensus        96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~i~~~~~~~~~~LS~G~  168 (267)
T PRK14237         96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWD-------QVKDDLHKSALTLSGGQ  168 (267)
T ss_pred             hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCc-------hhhhhhcCCcccCCHHH
Confidence            55678899999999999989999999885321  1 11    12222333333222       22345667889999999


Q ss_pred             HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          405 KQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       405 ~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +||++||||++++|+++||||||++||+.+++.+.+.|+++.++.|+|++||+++.+.. ||++++|++|++++
T Consensus       169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~  242 (267)
T PRK14237        169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIE  242 (267)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999988767899999999998755 99999999999975

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=100.00  E-value=4.2e-45  Score=350.55  Aligned_cols=213  Identities=26%  Similarity=0.409  Sum_probs=172.1

Q ss_pred             EEEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC---CCccEEEECCeecCCCCHHHhh
Q 048556          261 IELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD---PQAGEVLIDGVNLKEFQLKWIR  336 (478)
Q Consensus       261 i~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~r  336 (478)
                      ++++||+|+|++.+ .+++++|+||+|++||+++|+||||||||||+++|+|+++   |++|+|.++|.++.   ...+|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~   80 (226)
T cd03234           4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ   80 (226)
T ss_pred             ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence            57999999997542 2579999999999999999999999999999999999999   99999999999875   34678


Q ss_pred             cceEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHH-HHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 048556          337 GKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAK-FIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI  414 (478)
Q Consensus       337 ~~i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~-~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal  414 (478)
                      +.++|+||++.+|++ |++||+.++..........+........+ .+..+  |+..........|||||+||++||||+
T Consensus        81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral  158 (226)
T cd03234          81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSIAVQL  158 (226)
T ss_pred             ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHHHHHH
Confidence            889999999999987 99999987532111000000111111122 23332  444455567789999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCc-hh-hhhcCEEEEEeCCEEeeC
Q 048556          415 LKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRL-ST-VRNADLIAVIHQGKLVEK  478 (478)
Q Consensus       415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~-~~-~~~~d~i~vl~~G~i~~~  478 (478)
                      +++|+++||||||++||+.+++.+.+.+++.. +++|+|++||++ .. .+.||++++|++|++++.
T Consensus       159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~  225 (226)
T cd03234         159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYS  225 (226)
T ss_pred             HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEec
Confidence            99999999999999999999999999998875 468999999998 34 455999999999999863

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.5e-45  Score=356.35  Aligned_cols=208  Identities=33%  Similarity=0.476  Sum_probs=173.9

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC--C---CccEEEECCeecCC--CCH
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD--P---QAGEVLIDGVNLKE--FQL  332 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~---~~G~i~~~g~~~~~--~~~  332 (478)
                      -++++|+++.|++   +++|+|+||+|++||+++|+||||||||||+++|+|+++  |   ++|+|.++|.++..  .+.
T Consensus        12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~   88 (259)
T PRK14274         12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL   88 (259)
T ss_pred             eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence            4899999999963   469999999999999999999999999999999999997  3   58999999999864  345


Q ss_pred             HHhhcceEEEecCCCCCcccHHHHHhcCCCCC---CHHH----HHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556          333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKDGA---SIAE----IMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK  405 (478)
Q Consensus       333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~---~~~~----~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~  405 (478)
                      ..+|+.++|+||++.+|++|++||+.++....   ..++    +.++++..++.+.       +...+...+.+||||||
T Consensus        89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~l~~~~~~LS~Gq~  161 (259)
T PRK14274         89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDE-------VKDRLHTQALSLSGGQQ  161 (259)
T ss_pred             HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchh-------hhhhhhCCcccCCHHHH
Confidence            56788999999999999999999998753211   1222    2222222222211       12345677889999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||++||||++.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus       162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~  234 (259)
T PRK14274        162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVE  234 (259)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999998777899999999998765 99999999999975

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=3.4e-45  Score=363.21  Aligned_cols=204  Identities=31%  Similarity=0.548  Sum_probs=176.1

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      .++++|+++.|++  ++.+|+|+||+|++||++|++||||||||||+|+|+|++.|++|+|.++|.+...- ..+.++++
T Consensus         4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i   80 (293)
T COG1131           4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI   80 (293)
T ss_pred             eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence            4788999999962  24799999999999999999999999999999999999999999999999998765 66788999


Q ss_pred             EEEecCCCCCcc-cHHHHHhcCCCCC------CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048556          340 GLVSQEPVLFTS-SIKDNINYGKDGA------SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR  412 (478)
Q Consensus       340 ~~v~Q~~~lf~~-ti~eNl~~~~~~~------~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lAR  412 (478)
                      ||+||++.+++. |++||+.+...-.      ..+++.+.++..           |++..-......||+|||||++||+
T Consensus        81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~-----------~L~~~~~~~~~~lS~G~kqrl~ia~  149 (293)
T COG1131          81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELF-----------GLEDKANKKVRTLSGGMKQRLSIAL  149 (293)
T ss_pred             EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHc-----------CCchhhCcchhhcCHHHHHHHHHHH
Confidence            999999998887 9999999854211      123344444433           3443224567899999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-C-CeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          413 AILKDPRILLLDEATSALDAESERVVQEALDKIMI-N-RTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       413 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~-~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||+++|++|||||||+|||+.++..+++.|+++.+ + +||+++||.++.++. ||+|++|++|+++.
T Consensus       150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~  217 (293)
T COG1131         150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIA  217 (293)
T ss_pred             HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEE
Confidence            99999999999999999999999999999999875 4 699999999999988 99999999999975

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-44  Score=357.84  Aligned_cols=208  Identities=30%  Similarity=0.552  Sum_probs=175.5

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++|++++|+++  .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus         4 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~   81 (277)
T PRK13652          4 IETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG   81 (277)
T ss_pred             EEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence            7899999999632  36999999999999999999999999999999999999999999999999998777777888999


Q ss_pred             EEecCCC--CCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556          341 LVSQEPV--LFTSSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK  416 (478)
Q Consensus       341 ~v~Q~~~--lf~~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~  416 (478)
                      |+||++.  +|+.|++||+.++..  ..+.++..+     ...++++.+  |+..........||||||||++|||||+.
T Consensus        82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrl~laraL~~  154 (277)
T PRK13652         82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAH-----RVSSALHML--GLEELRDRVPHHLSGGEKKRVAIAGVIAM  154 (277)
T ss_pred             EEecCcccccccccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHC--CChhHhcCCcccCCHHHHHHHHHHHHHHc
Confidence            9999973  677899999987532  122222211     122333333  44444556678999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEee
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVR-NADLIAVIHQGKLVE  477 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~  477 (478)
                      +|+++||||||++||+.+.+.+.+.++++.+  ++|+|++||+++.+. .||++++|++|++++
T Consensus       155 ~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~  218 (277)
T PRK13652        155 EPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVA  218 (277)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEE
Confidence            9999999999999999999999999988753  689999999999985 599999999999875

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.2e-45  Score=356.26  Aligned_cols=208  Identities=33%  Similarity=0.518  Sum_probs=173.6

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----CccEEEECCeecCCC--CH
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGVNLKEF--QL  332 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~~~~~--~~  332 (478)
                      .++++|++++|++   +++|+|+||+|++||++||+||||||||||+++|+|+++|     ++|+|.++|.++...  +.
T Consensus        12 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   88 (258)
T PRK14268         12 QIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV   88 (258)
T ss_pred             eEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence            5999999999963   4699999999999999999999999999999999999985     799999999998653  23


Q ss_pred             HHhhcceEEEecCCCCCcccHHHHHhcCCC--CCCHHH----HHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHH
Q 048556          333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKD--GASIAE----IMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQ  406 (478)
Q Consensus       333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~--~~~~~~----~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Q  406 (478)
                      ..+++.++|+||++.+|+.|++||+.++..  ..+.++    +.++++..++.+       ............|||||+|
T Consensus        89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LSgG~~q  161 (258)
T PRK14268         89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWD-------ETSDRLKSPALSLSGGQQQ  161 (258)
T ss_pred             HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc-------chhhhhcCChhhCCHHHHH
Confidence            456788999999999999999999987531  122222    222222222211       1133455677899999999


Q ss_pred             HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          407 RIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       407 rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |++|||||+.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus       162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~  233 (258)
T PRK14268        162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIE  233 (258)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999999999999999988667899999999998865 99999999999875

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.9e-45  Score=359.85  Aligned_cols=210  Identities=32%  Similarity=0.570  Sum_probs=178.2

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCc---cEEEECCeecCCCCHHHhh
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA---GEVLIDGVNLKEFQLKWIR  336 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~---G~i~~~g~~~~~~~~~~~r  336 (478)
                      -++++|++|.|++. .+++++|+||+|++||+++|+||||||||||+++|+|+++|++   |+|.++|.++...+...++
T Consensus         5 ~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~   83 (282)
T PRK13640          5 IVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR   83 (282)
T ss_pred             eEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence            48999999999642 2469999999999999999999999999999999999999988   8999999999877777788


Q ss_pred             cceEEEecCCC--CCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048556          337 GKIGLVSQEPV--LFTSSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR  412 (478)
Q Consensus       337 ~~i~~v~Q~~~--lf~~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lAR  412 (478)
                      ++++|+||++.  +++.|+.||+.++.+.  .+.++..+     .+.+.++.+  |+.........+|||||+||++|||
T Consensus        84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LS~G~~qrv~lar  156 (282)
T PRK13640         84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIK-----IVRDVLADV--GMLDYIDSEPANLSGGQKQRVAIAG  156 (282)
T ss_pred             hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHH-----HHHHHHHHC--CChhHhcCCcccCCHHHHHHHHHHH
Confidence            89999999984  5677999999876322  23333211     112333333  4555566667899999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          413 AILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       413 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      ||+.+|+++||||||++||+.+++.+.+.|+++.+  ++|+|++||+++.+..||++++|++|++++
T Consensus       157 al~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~  223 (282)
T PRK13640        157 ILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLA  223 (282)
T ss_pred             HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999988753  689999999999998899999999999975

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6e-45  Score=355.08  Aligned_cols=208  Identities=31%  Similarity=0.475  Sum_probs=172.5

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccC--CC---CccEEEECCeecCCC--CH
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFY--DP---QAGEVLIDGVNLKEF--QL  332 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~--~~---~~G~i~~~g~~~~~~--~~  332 (478)
                      -++++|++++|++   +++++|+||+|++||+++|+||||||||||+++|+|++  .|   ++|+|.++|+++...  +.
T Consensus         5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~   81 (252)
T PRK14239          5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT   81 (252)
T ss_pred             eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence            3899999999963   46999999999999999999999999999999999995  36   489999999998643  34


Q ss_pred             HHhhcceEEEecCCCCCcccHHHHHhcCCC--CCC-HH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556          333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKD--GAS-IA----EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK  405 (478)
Q Consensus       333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~--~~~-~~----~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~  405 (478)
                      ..+|+.++|+||++.+|+.|++||+.++..  ... .+    ++.++++..++.+       ++.+.......+||||||
T Consensus        82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~~  154 (252)
T PRK14239         82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWD-------EVKDRLHDSALGLSGGQQ  154 (252)
T ss_pred             HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCch-------hHHHHHhcCcccCCHHHH
Confidence            567888999999999999999999987531  111 11    2222222322211       223455677889999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||++||||++.+|+++||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++
T Consensus       155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~  227 (252)
T PRK14239        155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIE  227 (252)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999988667899999999998765 99999999999875

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8e-45  Score=358.13  Aligned_cols=209  Identities=34%  Similarity=0.510  Sum_probs=175.9

Q ss_pred             ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----CccEEEECCeecCC--CC
Q 048556          259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGVNLKE--FQ  331 (478)
Q Consensus       259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~~~~--~~  331 (478)
                      ..++++|++|+|++   +++|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++..  .+
T Consensus        24 ~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~  100 (272)
T PRK14236         24 TALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD  100 (272)
T ss_pred             cEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence            46999999999963   4699999999999999999999999999999999999984     89999999999864  34


Q ss_pred             HHHhhcceEEEecCCCCCcccHHHHHhcCCCC--C-CH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHH
Q 048556          332 LKWIRGKIGLVSQEPVLFTSSIKDNINYGKDG--A-SI----AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQ  404 (478)
Q Consensus       332 ~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~--~-~~----~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq  404 (478)
                      ...+|+.++|+||++.+|++|++||+.++...  . ..    +++.++++..++.+       .+.+..+..+.+|||||
T Consensus       101 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~Gq  173 (272)
T PRK14236        101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWD-------EVKDRLHENAFGLSGGQ  173 (272)
T ss_pred             HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCh-------hHHHHhhCCcccCCHHH
Confidence            55678899999999999989999999875321  1 11    12333333333222       22245667789999999


Q ss_pred             HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          405 KQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       405 ~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +||++||||++++|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus       174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~  247 (272)
T PRK14236        174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVE  247 (272)
T ss_pred             HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEe
Confidence            99999999999999999999999999999999999999988767899999999998765 99999999999875

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=100.00  E-value=6.3e-45  Score=356.05  Aligned_cols=209  Identities=32%  Similarity=0.544  Sum_probs=176.1

Q ss_pred             ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCC--------
Q 048556          259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEF--------  330 (478)
Q Consensus       259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~--------  330 (478)
                      +.++++|+++.|++   +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...        
T Consensus         4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   80 (257)
T PRK10619          4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK   80 (257)
T ss_pred             ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence            45999999999963   4799999999999999999999999999999999999999999999999987542        


Q ss_pred             -----CHHHhhcceEEEecCCCCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccccc-cCCCCCC
Q 048556          331 -----QLKWIRGKIGLVSQEPVLFTS-SIKDNINYGKD---GASIAEIMAAAELANAAKFIDSLPQGLDTMV-GEHGTQL  400 (478)
Q Consensus       331 -----~~~~~r~~i~~v~Q~~~lf~~-ti~eNl~~~~~---~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~-~~~g~~L  400 (478)
                           ....+++.++|+||++.+|+. |++||+.++..   ....++..     ..+.++++.+  |+.... .....+|
T Consensus        81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~L  153 (257)
T PRK10619         81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEAR-----ERAVKYLAKV--GIDERAQGKYPVHL  153 (257)
T ss_pred             cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHc--CCChhhhhCCcccC
Confidence                 134667899999999999985 99999986421   11211111     1123445554  565543 5678899


Q ss_pred             ChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          401 SGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       401 SgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |||||||++|||||+++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||||++|++|++++
T Consensus       154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~  232 (257)
T PRK10619        154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE  232 (257)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999999875 47899999999999886 99999999999975

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.5e-45  Score=360.18  Aligned_cols=211  Identities=27%  Similarity=0.479  Sum_probs=175.2

Q ss_pred             cEEEEeEEEECCCCC---CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC-HHHh
Q 048556          260 DIELKDIYFSYPSRP---GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ-LKWI  335 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~---~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~-~~~~  335 (478)
                      -++++|++++|++..   .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ...+
T Consensus         4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~   83 (280)
T PRK13633          4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI   83 (280)
T ss_pred             eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence            389999999997421   246999999999999999999999999999999999999999999999999987643 3557


Q ss_pred             hcceEEEecCCC--CCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 048556          336 RGKIGLVSQEPV--LFTSSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIA  411 (478)
Q Consensus       336 r~~i~~v~Q~~~--lf~~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lA  411 (478)
                      ++.++|+||++.  +|..|+.||+.++...  .+.++..+.     +.+.++.+  |+.........+|||||+||++||
T Consensus        84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~LS~G~~qrv~la  156 (280)
T PRK13633         84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRER-----VDESLKKV--GMYEYRRHAPHLLSGGQKQRVAIA  156 (280)
T ss_pred             hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHH-----HHHHHHHC--CCHhHhhCCcccCCHHHHHHHHHH
Confidence            889999999984  6666999999886321  122221111     12233333  455555566789999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          412 RAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      |||+.+|+++||||||++||+.++..+.+.|+++.  .++|+|++||+++.+..||++++|++|++++
T Consensus       157 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~  224 (280)
T PRK13633        157 GILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVM  224 (280)
T ss_pred             HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999875  3789999999999988899999999999875

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=100.00  E-value=5.4e-45  Score=349.57  Aligned_cols=204  Identities=27%  Similarity=0.474  Sum_probs=175.2

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      -|+++|+++.|++   +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus         7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i   83 (225)
T PRK10247          7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV   83 (225)
T ss_pred             eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence            4899999999963   4799999999999999999999999999999999999999999999999999888877788899


Q ss_pred             EEEecCCCCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHHHHHHcC
Q 048556          340 GLVSQEPVLFTSSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQKQRIAIARAILK  416 (478)
Q Consensus       340 ~~v~Q~~~lf~~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~Qrl~lARall~  416 (478)
                      +|++|++.+|+.|++||+.++...  ...++       ..+.++++.+  |+. +.......+|||||+||++|||||++
T Consensus        84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~-------~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral~~  154 (225)
T PRK10247         84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDP-------AIFLDDLERF--ALPDTILTKNIAELSGGEKQRISLIRNLQF  154 (225)
T ss_pred             EEEecccccccccHHHHHHhHHhhcCCChHH-------HHHHHHHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence            999999999989999999864210  11111       1123455555  553 45677889999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhhcCEEEEEe--CCEE
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRNADLIAVIH--QGKL  475 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~vl~--~G~i  475 (478)
                      +|+++||||||++||+.+.+.+.+.|+++.+  ++|+|++||+++.++.||++++|+  +|++
T Consensus       155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~  217 (225)
T PRK10247        155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEM  217 (225)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchH
Confidence            9999999999999999999999999998743  689999999999998899999996  4554

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.2e-45  Score=355.98  Aligned_cols=208  Identities=34%  Similarity=0.505  Sum_probs=172.6

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC-----CCccEEEECCeecCC--CCH
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGVNLKE--FQL  332 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~--~~~  332 (478)
                      -++++|++|+|++   +++|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|+++..  .+.
T Consensus         4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~   80 (251)
T PRK14251          4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL   80 (251)
T ss_pred             eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence            3899999999963   479999999999999999999999999999999999997     479999999999854  344


Q ss_pred             HHhhcceEEEecCCCCCcccHHHHHhcCCCC--CC-HH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556          333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKDG--AS-IA----EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK  405 (478)
Q Consensus       333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~--~~-~~----~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~  405 (478)
                      ..+++.++|++|++.+|+.|++||+.++...  .. .+    ++.++++..++++       .........+.+|||||+
T Consensus        81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~Gq~  153 (251)
T PRK14251         81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWK-------ETKDNLDRNAQAFSGGQQ  153 (251)
T ss_pred             HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCc-------chHHHhccChhhCCHHHH
Confidence            5678889999999999999999999875321  11 11    2222222222211       011334567789999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||++||||++++|+++||||||++||+.+++.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++
T Consensus       154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~  226 (251)
T PRK14251        154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIE  226 (251)
T ss_pred             HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999988667899999999998766 99999999999875

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=100.00  E-value=1.5e-44  Score=364.58  Aligned_cols=211  Identities=28%  Similarity=0.414  Sum_probs=176.4

Q ss_pred             cEEEEeEEEECCCCC----------CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCC
Q 048556          260 DIELKDIYFSYPSRP----------GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE  329 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~----------~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~  329 (478)
                      -++++|++++|+...          ..++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+
T Consensus         8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~   87 (331)
T PRK15079          8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG   87 (331)
T ss_pred             eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence            489999999996311          2469999999999999999999999999999999999999999999999999988


Q ss_pred             CCHHH---hhcceEEEecCC--CCCc-ccHHHHHhcCC----CCCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCC
Q 048556          330 FQLKW---IRGKIGLVSQEP--VLFT-SSIKDNINYGK----DGASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGT  398 (478)
Q Consensus       330 ~~~~~---~r~~i~~v~Q~~--~lf~-~ti~eNl~~~~----~~~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~  398 (478)
                      ++.++   +|+.++||+|++  .+++ .|+.||+.++.    +..+.++..+..     .+.++.+  |++ ......+.
T Consensus        88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~-----~~~l~~v--gl~~~~~~~~p~  160 (331)
T PRK15079         88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRV-----KAMMLKV--GLLPNLINRYPH  160 (331)
T ss_pred             CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHc--CCChHHhcCCcc
Confidence            87543   578899999998  4775 59999997531    123333332221     2333333  442 34567788


Q ss_pred             CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 048556          399 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKL  475 (478)
Q Consensus       399 ~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i  475 (478)
                      +|||||+||++|||||+.+|+++|+||||++||..++..+.+.|+++.+  +.|+|+|||+++.+.. ||+|++|++|++
T Consensus       161 ~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~i  240 (331)
T PRK15079        161 EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHA  240 (331)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence            9999999999999999999999999999999999999999999998753  6899999999999976 999999999999


Q ss_pred             ee
Q 048556          476 VE  477 (478)
Q Consensus       476 ~~  477 (478)
                      +|
T Consensus       241 ve  242 (331)
T PRK15079        241 VE  242 (331)
T ss_pred             EE
Confidence            87

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=100.00  E-value=6.1e-45  Score=357.68  Aligned_cols=210  Identities=32%  Similarity=0.492  Sum_probs=174.4

Q ss_pred             EEEEeEEEECCCC------CCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHH
Q 048556          261 IELKDIYFSYPSR------PGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW  334 (478)
Q Consensus       261 i~~~~v~~~y~~~------~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~  334 (478)
                      ++++||+|.|++.      .++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..+
T Consensus         3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~   82 (265)
T TIGR02769         3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ   82 (265)
T ss_pred             EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence            7899999999631      1257999999999999999999999999999999999999999999999999998776543


Q ss_pred             ---hhcceEEEecCCC--CCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHH
Q 048556          335 ---IRGKIGLVSQEPV--LFT-SSIKDNINYGKD---GASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQ  404 (478)
Q Consensus       335 ---~r~~i~~v~Q~~~--lf~-~ti~eNl~~~~~---~~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq  404 (478)
                         +|+.++|+||++.  +++ .|++||+.++..   ....++     ....+.++++.+  |++ ......+.+|||||
T Consensus        83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~-----~~~~~~~~l~~~--gl~~~~~~~~~~~LSgGe  155 (265)
T TIGR02769        83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESE-----QKARIAELLDMV--GLRSEDADKLPRQLSGGQ  155 (265)
T ss_pred             HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHH-----HHHHHHHHHHHc--CCChhhhhCChhhCCHHH
Confidence               5778999999973  444 599999975321   111111     111233455555  664 45567788999999


Q ss_pred             HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          405 KQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       405 ~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |||++||||++.+|++|||||||++||+.+++.+.+.|+++.+  ++|+|++||+++.+.. ||++++|++|++++
T Consensus       156 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~  231 (265)
T TIGR02769       156 LQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE  231 (265)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence            9999999999999999999999999999999999999998753  6899999999999875 99999999999875

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=100.00  E-value=6e-45  Score=363.89  Aligned_cols=206  Identities=23%  Similarity=0.449  Sum_probs=178.6

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++|++++|++   +.+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. +...+++.++
T Consensus         3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig   78 (301)
T TIGR03522         3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG   78 (301)
T ss_pred             EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence            789999999963   469999999999999999999999999999999999999999999999999876 3456788999


Q ss_pred             EEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556          341 LVSQEPVLFTS-SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD  417 (478)
Q Consensus       341 ~v~Q~~~lf~~-ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~  417 (478)
                      |+||++.+|++ |++||+.+....  ...++..+     .+.+.++.+  |++.........||||||||++|||||+++
T Consensus        79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~  151 (301)
T TIGR03522        79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ-----RVEEMIELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHD  151 (301)
T ss_pred             EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence            99999999987 999999864311  12222211     123455555  677777778899999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          418 PRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       418 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |+++||||||++||+.+.+.+++.|+++.+++|+|++||+++.+.. ||+|++|++|+++.
T Consensus       152 p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~  212 (301)
T TIGR03522       152 PKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVA  212 (301)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999998777999999999998876 99999999999874

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=100.00  E-value=6.8e-45  Score=368.03  Aligned_cols=207  Identities=29%  Similarity=0.498  Sum_probs=174.3

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      -|+++|++++|++   ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+.+ ...++.+
T Consensus        41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i  116 (340)
T PRK13536         41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI  116 (340)
T ss_pred             eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence            4999999999963   46999999999999999999999999999999999999999999999999987654 4678899


Q ss_pred             EEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556          340 GLVSQEPVLFTS-SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK  416 (478)
Q Consensus       340 ~~v~Q~~~lf~~-ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~  416 (478)
                      +|+||++.+|.. |++||+.+....  .+.++..+.     +.++++.+  |+.........+||||||||++|||||+.
T Consensus       117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~~--~L~~~~~~~~~~LS~G~kqrv~lA~aL~~  189 (340)
T PRK13536        117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAV-----IPSLLEFA--RLESKADARVSDLSGGMKRRLTLARALIN  189 (340)
T ss_pred             EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchhhCCChhhCCHHHHHHHHHHHHHhc
Confidence            999999998764 999999864221  222222221     12233322  44444555667899999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +|+++||||||++||+.+++.+++.|+++. +++|+|++||+++.+.. ||+|++|++|+++.
T Consensus       190 ~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~  252 (340)
T PRK13536        190 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIA  252 (340)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999999875 47899999999999876 99999999999974

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-44  Score=352.31  Aligned_cols=208  Identities=30%  Similarity=0.522  Sum_probs=175.3

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCC-----ccEEEECCeecCC--CCH
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ-----AGEVLIDGVNLKE--FQL  332 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~-----~G~i~~~g~~~~~--~~~  332 (478)
                      .++++|++|+|++   +++|+|+||+|++||+++|+||||||||||+++|+|+++|+     +|+|.++|.++..  .+.
T Consensus         4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~   80 (251)
T PRK14249          4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV   80 (251)
T ss_pred             eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence            4899999999963   46999999999999999999999999999999999999997     6999999999864  344


Q ss_pred             HHhhcceEEEecCCCCCcccHHHHHhcCCCC--CC-HH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556          333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKDG--AS-IA----EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK  405 (478)
Q Consensus       333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~--~~-~~----~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~  405 (478)
                      ..+|+.++|+||++.+|+.|++||+.++...  .. .+    .+.++++..++.+       ++.......+.+||||||
T Consensus        81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~Gq~  153 (251)
T PRK14249         81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWD-------EVKDNLHKSGLALSGGQQ  153 (251)
T ss_pred             HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCch-------hhhhHhhCCcccCCHHHH
Confidence            5678899999999999999999999876321  11 11    1222222333222       233456678899999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||++|||||+.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus       154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~  226 (251)
T PRK14249        154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVE  226 (251)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEE
Confidence            9999999999999999999999999999999999999988667899999999999876 89999999999865

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-44  Score=359.67  Aligned_cols=210  Identities=30%  Similarity=0.556  Sum_probs=176.5

Q ss_pred             EEEEeEEEECCCCC--CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCC----CHHH
Q 048556          261 IELKDIYFSYPSRP--GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEF----QLKW  334 (478)
Q Consensus       261 i~~~~v~~~y~~~~--~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~----~~~~  334 (478)
                      |+++|++++|++..  .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...    +...
T Consensus         3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~   82 (287)
T PRK13641          3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK   82 (287)
T ss_pred             EEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence            78999999996321  14699999999999999999999999999999999999999999999999998643    2456


Q ss_pred             hhcceEEEecCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHH
Q 048556          335 IRGKIGLVSQEP--VLFTSSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQKQRIA  409 (478)
Q Consensus       335 ~r~~i~~v~Q~~--~lf~~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~Qrl~  409 (478)
                      .++.++|+||++  .+|..|++||+.++..  ..+.++..+     .+.++++.+  |++ ........+||||||||++
T Consensus        83 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrl~  155 (287)
T PRK13641         83 LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKE-----KALKWLKKV--GLSEDLISKSPFELSGGQMRRVA  155 (287)
T ss_pred             HHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCChhHhhCCcccCCHHHHHHHH
Confidence            678899999998  5777899999987532  222222221     123455555  675 3557778999999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          410 IARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       410 lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |||||+.+|++|||||||++||+.+.+.+.+.|+++. ++.|+|++||+++.+.. ||++++|++|++++
T Consensus       156 laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~  225 (287)
T PRK13641        156 IAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIK  225 (287)
T ss_pred             HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999875 46899999999998765 99999999999875

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.3e-45  Score=351.03  Aligned_cols=206  Identities=34%  Similarity=0.553  Sum_probs=169.2

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCe---ecCCCCHHHhh
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGV---NLKEFQLKWIR  336 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~---~~~~~~~~~~r  336 (478)
                      .|+++|+++.|+.   .++++|||++|+.||.+|+.||||||||||+++|+|+..|++|.|.+||.   |.++....  .
T Consensus         2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~--~   76 (345)
T COG1118           2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR--D   76 (345)
T ss_pred             ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchh--h
Confidence            4788999999964   47999999999999999999999999999999999999999999999999   65554433  4


Q ss_pred             cceEEEecCCCCCcc-cHHHHHhcCCCC----CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 048556          337 GKIGLVSQEPVLFTS-SIKDNINYGKDG----ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIA  411 (478)
Q Consensus       337 ~~i~~v~Q~~~lf~~-ti~eNl~~~~~~----~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lA  411 (478)
                      ++||||+|+.-||.. ||++||.||-+-    .+..++.  .+.   .+.++-.  .++..-...+.+||||||||+|||
T Consensus        77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r--~rv---~elL~lv--qL~~la~ryP~QLSGGQrQRVALA  149 (345)
T COG1118          77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIR--ARV---EELLRLV--QLEGLADRYPAQLSGGQRQRVALA  149 (345)
T ss_pred             cceeEEEechhhcccchHHhhhhhcccccccCCChhhHH--HHH---HHHHHHh--cccchhhcCchhcChHHHHHHHHH
Confidence            789999999999986 999999999621    1111111  111   2222211  233333456789999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          412 RAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |||...|++|+||||+++||+.-++.+..-|+++..  +.|+++|||+.+++.. ||||+||++|+|.+
T Consensus       150 RALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieq  218 (345)
T COG1118         150 RALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQ  218 (345)
T ss_pred             HHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeee
Confidence            999999999999999999999999999999988743  6899999999987655 99999999999864

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.3e-45  Score=355.11  Aligned_cols=210  Identities=34%  Similarity=0.503  Sum_probs=173.2

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhcc---CCC--CccEEEECCeecCCC--CH
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERF---YDP--QAGEVLIDGVNLKEF--QL  332 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~---~~~--~~G~i~~~g~~~~~~--~~  332 (478)
                      .++++|+++.|++   +++++|+||++++||+++|+||||||||||+++|+|+   ++|  ++|+|.++|+++...  +.
T Consensus         3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~   79 (250)
T PRK14245          3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV   79 (250)
T ss_pred             EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence            4889999999963   4699999999999999999999999999999999997   454  589999999998754  34


Q ss_pred             HHhhcceEEEecCCCCCcccHHHHHhcCCCC--C-CHHHHHHHHHHhcHHHHHHhC--CCCccccccCCCCCCChHHHHH
Q 048556          333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKDG--A-SIAEIMAAAELANAAKFIDSL--PQGLDTMVGEHGTQLSGGQKQR  407 (478)
Q Consensus       333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~--~-~~~~~~~a~~~~~~~~~i~~l--p~g~~t~~~~~g~~LSgGq~Qr  407 (478)
                      ..+++.++|+||++.+|+.|++||+.++...  . ..++..+.     +.+.++.+  ++.+.+.....+.+||||||||
T Consensus        80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr  154 (250)
T PRK14245         80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQR-----VEETLKGAALWDEVKDKLKESAFALSGGQQQR  154 (250)
T ss_pred             HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHH-----HHHHHHHcCCCcchhhhhhCCcccCCHHHHHH
Confidence            5678899999999999988999999875321  1 11111111     12233322  2222345567789999999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          408 IAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       408 l~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus       155 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~  225 (250)
T PRK14245        155 LCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVE  225 (250)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999998777899999999998855 99999999999975

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.3e-44  Score=352.18  Aligned_cols=208  Identities=32%  Similarity=0.515  Sum_probs=175.4

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----CccEEEECCeecC-CCCHH
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGVNLK-EFQLK  333 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~~~-~~~~~  333 (478)
                      .++++|+++.|++   +++|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++. ..+..
T Consensus         3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~   79 (249)
T PRK14253          3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA   79 (249)
T ss_pred             eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence            4789999999963   4799999999999999999999999999999999999986     5999999999985 44566


Q ss_pred             HhhcceEEEecCCCCCcccHHHHHhcCCCC--CC-HH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHH
Q 048556          334 WIRGKIGLVSQEPVLFTSSIKDNINYGKDG--AS-IA----EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQ  406 (478)
Q Consensus       334 ~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~--~~-~~----~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Q  406 (478)
                      .+|+.++|+||++.+|+.|++||+.++...  .. .+    ++.++++..++.+       ++.+.+......|||||+|
T Consensus        80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~LS~G~~q  152 (249)
T PRK14253         80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWD-------EVKDRLKSHAFGLSGGQQQ  152 (249)
T ss_pred             HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCch-------hhhHHhhcCcccCCHHHHH
Confidence            778899999999999999999999876321  11 11    2222233333222       2234556678899999999


Q ss_pred             HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          407 RIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       407 rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus       153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~  224 (249)
T PRK14253        153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVE  224 (249)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999999999999999998767899999999999776 99999999999975

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.7e-45  Score=355.67  Aligned_cols=207  Identities=33%  Similarity=0.534  Sum_probs=171.8

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC-----CCccEEEECCeecCCCC--HH
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGVNLKEFQ--LK  333 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~~~--~~  333 (478)
                      -+++|++|.|++   +++++|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|.++...+  ..
T Consensus         6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~   82 (251)
T PRK14244          6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV   82 (251)
T ss_pred             EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence            468999999963   479999999999999999999999999999999999986     47999999999886543  23


Q ss_pred             HhhcceEEEecCCCCCcccHHHHHhcCCC--CC--CH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556          334 WIRGKIGLVSQEPVLFTSSIKDNINYGKD--GA--SI----AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK  405 (478)
Q Consensus       334 ~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~--~~--~~----~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~  405 (478)
                      .+|+.++|+||++.+|++|++||+.++..  ..  ..    +++.++++..++.++       +.+.++..+.+||||||
T Consensus        83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~Gq~  155 (251)
T PRK14244         83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEE-------LGDRLKDSAFELSGGQQ  155 (251)
T ss_pred             HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCch-------hhhHhhcChhhCCHHHH
Confidence            56889999999999999999999987521  11  11    122222333222211       12345667889999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||++||||++++|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus       156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~  228 (251)
T PRK14244        156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVE  228 (251)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999988768999999999999865 99999999999975

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-44  Score=355.10  Aligned_cols=208  Identities=25%  Similarity=0.420  Sum_probs=176.3

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      .|+++|++++|++   +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus         7 ~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i   83 (265)
T PRK10253          7 RLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI   83 (265)
T ss_pred             EEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence            5899999999963   4699999999999999999999999999999999999999999999999999888888888899


Q ss_pred             EEEecCCCCCc-ccHHHHHhcCC-CCC-----CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048556          340 GLVSQEPVLFT-SSIKDNINYGK-DGA-----SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR  412 (478)
Q Consensus       340 ~~v~Q~~~lf~-~ti~eNl~~~~-~~~-----~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lAR  412 (478)
                      +|+||++.+|. .|++||+.++. +..     ..++.     ...+.+.++.+  |++.........|||||+||++|||
T Consensus        84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrv~lar  156 (265)
T PRK10253         84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKED-----EEAVTKAMQAT--GITHLADQSVDTLSGGQRQRAWIAM  156 (265)
T ss_pred             EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHH-----HHHHHHHHHHc--CCHHHhcCCcccCChHHHHHHHHHH
Confidence            99999999886 49999998753 110     00110     11122333333  4554556678899999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          413 AILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       413 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |++++|+++||||||++||+.+.+.+.+.|+++.+  ++|+|++||+++.+.. ||++++|++|++++
T Consensus       157 al~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~  224 (265)
T PRK10253        157 VLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVA  224 (265)
T ss_pred             HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999988753  6899999999998765 99999999999875

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-44  Score=353.22  Aligned_cols=208  Identities=29%  Similarity=0.486  Sum_probs=175.0

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----CccEEEECCeecCCC--CH
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGVNLKEF--QL  332 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~~~~~--~~  332 (478)
                      -|+++|++|.|++   +++|+|+||+|++||+++|+||||||||||+++|+|+.+|     ++|+|.++|.++...  +.
T Consensus         6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~   82 (253)
T PRK14261          6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV   82 (253)
T ss_pred             eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence            4899999999963   4799999999999999999999999999999999999763     489999999998765  44


Q ss_pred             HHhhcceEEEecCCCCCcccHHHHHhcCCCCC---CHH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556          333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKDGA---SIA----EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK  405 (478)
Q Consensus       333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~---~~~----~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~  405 (478)
                      ...++.++|++|++.+|+.|++||+.++....   ...    ++.++++..++       .+++.+.++..+..||||||
T Consensus        83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~l~~~~~~~~~~LS~G~~  155 (253)
T PRK14261         83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAAL-------WDEVKDRLHDSALSLSGGQQ  155 (253)
T ss_pred             hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcC-------chhhHHHhhcChhhCCHHHH
Confidence            56788899999999999999999999863211   111    22222222222       22334456778899999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus       156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~  228 (253)
T PRK14261        156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIE  228 (253)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999988767899999999999865 99999999999875

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=100.00  E-value=1e-44  Score=346.44  Aligned_cols=208  Identities=33%  Similarity=0.474  Sum_probs=176.9

Q ss_pred             EEEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHH---Hhh
Q 048556          261 IELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLK---WIR  336 (478)
Q Consensus       261 i~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~---~~r  336 (478)
                      ++++|+++.|++.. .+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..   ..+
T Consensus         2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (220)
T TIGR02982         2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR   81 (220)
T ss_pred             EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence            78999999996421 14699999999999999999999999999999999999999999999999998776643   467


Q ss_pred             cceEEEecCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048556          337 GKIGLVSQEPVLFT-SSIKDNINYGKD---GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR  412 (478)
Q Consensus       337 ~~i~~v~Q~~~lf~-~ti~eNl~~~~~---~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lAR  412 (478)
                      +.++|+||++.+|. .|+.||+.++..   ..+.++..+     .+.+.++.+  |++........+||||||||++|||
T Consensus        82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrv~lar  154 (220)
T TIGR02982        82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARE-----RARAMLEAV--GLGDHLDYYPHNLSGGQKQRVAIAR  154 (220)
T ss_pred             hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHH-----HHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHH
Confidence            88999999999998 599999987542   122222221     233455555  6666667777899999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhhcCEEEEEeCCEE
Q 048556          413 AILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRNADLIAVIHQGKL  475 (478)
Q Consensus       413 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~vl~~G~i  475 (478)
                      |++.+|+++||||||++||+.+++.+.+.|+++.+  ++|+|++||+++..+.||+|++|++|++
T Consensus       155 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~  219 (220)
T TIGR02982       155 ALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL  219 (220)
T ss_pred             HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence            99999999999999999999999999999988753  6899999999998777999999999986

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=2.3e-44  Score=352.18  Aligned_cols=207  Identities=29%  Similarity=0.479  Sum_probs=175.2

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++|+++.|++   +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus         3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~   79 (258)
T PRK13548          3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA   79 (258)
T ss_pred             EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence            789999999963   46999999999999999999999999999999999999999999999999998887777788999


Q ss_pred             EEecCCCC-CcccHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc--
Q 048556          341 LVSQEPVL-FTSSIKDNINYGKDGA--SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL--  415 (478)
Q Consensus       341 ~v~Q~~~l-f~~ti~eNl~~~~~~~--~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall--  415 (478)
                      |+||++.+ +..|++||+.++....  +.++..+     .+.+.++.+  |++.........||||||||++|||||+  
T Consensus        80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGe~qrv~la~al~~~  152 (258)
T PRK13548         80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDA-----LVAAALAQV--DLAHLAGRDYPQLSGGEQQRVQLARVLAQL  152 (258)
T ss_pred             EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHH-----HHHHHHHHc--CCHhHhcCCcccCCHHHHHHHHHHHHHhcc
Confidence            99999987 4569999998864211  1111111     112333333  5555556677899999999999999999  


Q ss_pred             ----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          416 ----KDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       416 ----~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                          .+|+++||||||++||+.+.+.+.+.|+++.  .++|+|++||+++.+.. ||+|++|++|++++
T Consensus       153 ~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  221 (258)
T PRK13548        153 WEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVA  221 (258)
T ss_pred             cccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEe
Confidence                5999999999999999999999999998875  46899999999998875 99999999999874

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.6e-45  Score=332.31  Aligned_cols=207  Identities=32%  Similarity=0.515  Sum_probs=178.0

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      +++.+++++|+.  ...+++|+||+++.||++||.|||||||||++++|++++.|++|+|++||.|....+ ...|++||
T Consensus         2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p-~~vrr~IG   78 (245)
T COG4555           2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP-SFVRRKIG   78 (245)
T ss_pred             eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccCh-HHHhhhcc
Confidence            678999999974  346899999999999999999999999999999999999999999999999987765 55689999


Q ss_pred             EEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556          341 LVSQEPVLFTS-SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD  417 (478)
Q Consensus       341 ~v~Q~~~lf~~-ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~  417 (478)
                      +++.+..++.. |++|||.|+..-  -+..++.  ++.+   +....|  +++..+..+..+||.|+|||++|||||++|
T Consensus        79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~k--ari~---~l~k~l--~l~~~~~rRv~~~S~G~kqkV~iARAlvh~  151 (245)
T COG4555          79 VLFGERGLYARLTARENLKYFARLNGLSRKEIK--ARIA---ELSKRL--QLLEYLDRRVGEFSTGMKQKVAIARALVHD  151 (245)
T ss_pred             eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHH--HHHH---HHHHHh--ChHHHHHHHHhhhchhhHHHHHHHHHHhcC
Confidence            99998899876 999999986421  1222222  2232   333333  566666677788999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          418 PRILLLDEATSALDAESERVVQEALDKIMI-NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       418 ~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |++++|||||||||..+.+++.+-+++++. ++++|+.||.++.++. ||+++++.+|+++.
T Consensus       152 P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~  213 (245)
T COG4555         152 PSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVL  213 (245)
T ss_pred             CCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEE
Confidence            999999999999999999999999999875 8999999999999996 99999999999875

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.4e-44  Score=354.48  Aligned_cols=211  Identities=28%  Similarity=0.479  Sum_probs=175.4

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC-----CCccEEEECCeecCC--CCH
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGVNLKE--FQL  332 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~--~~~  332 (478)
                      -++++|+++.|++   +++|+|+||+|++||+++|+|+||||||||+++|+|+++     |++|+|.++|.++..  .+.
T Consensus        24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~  100 (271)
T PRK14238         24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV  100 (271)
T ss_pred             EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence            5999999999963   469999999999999999999999999999999999987     699999999999853  345


Q ss_pred             HHhhcceEEEecCCCCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhC--CCCccccccCCCCCCChHHHHHH
Q 048556          333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSL--PQGLDTMVGEHGTQLSGGQKQRI  408 (478)
Q Consensus       333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~l--p~g~~t~~~~~g~~LSgGq~Qrl  408 (478)
                      ..+++.++|+||++.+|..|++||+.++..  ...+++..+    ..+.+.++.+  .+++.......+.+||||||||+
T Consensus       101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv  176 (271)
T PRK14238        101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLD----EIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRL  176 (271)
T ss_pred             HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHH----HHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHH
Confidence            667889999999999998999999987531  122221111    0111222221  12344556678899999999999


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          409 AIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       409 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +|||||+.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus       177 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~  246 (271)
T PRK14238        177 CIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNE  246 (271)
T ss_pred             HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999988777899999999999765 99999999999975

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.6e-44  Score=355.85  Aligned_cols=207  Identities=29%  Similarity=0.481  Sum_probs=172.0

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecC--CCCHHHhhcc
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLK--EFQLKWIRGK  338 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~--~~~~~~~r~~  338 (478)
                      ++++||+++|++   +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.  +.+...+|+.
T Consensus         2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~   78 (271)
T PRK13638          2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ   78 (271)
T ss_pred             eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence            689999999963   46999999999999999999999999999999999999999999999999985  3344567888


Q ss_pred             eEEEecCCC--CCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 048556          339 IGLVSQEPV--LFTSSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI  414 (478)
Q Consensus       339 i~~v~Q~~~--lf~~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal  414 (478)
                      ++|+||++.  ++..|+.+|+.++..  ..+.++..+.     +.+.++.+  |++........+||||||||++|||||
T Consensus        79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~laraL  151 (271)
T PRK13638         79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRR-----VDEALTLV--DAQHFRHQPIQCLSHGQKKRVAIAGAL  151 (271)
T ss_pred             eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCHhHhcCCchhCCHHHHHHHHHHHHH
Confidence            999999986  566789999987421  1222222111     12333333  444444556789999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          415 LKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus       152 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~  216 (271)
T PRK13638        152 VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILT  216 (271)
T ss_pred             HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999998875 46899999999999865 99999999999875

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.7e-44  Score=343.20  Aligned_cols=199  Identities=32%  Similarity=0.529  Sum_probs=168.3

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++|+++.|+.     .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+  .+++.++
T Consensus         1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~   73 (213)
T TIGR01277         1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS   73 (213)
T ss_pred             CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence            368999999952     467999999999999999999999999999999999999999999999987643  3578899


Q ss_pred             EEecCCCCCcc-cHHHHHhcCC-CCC-----CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556          341 LVSQEPVLFTS-SIKDNINYGK-DGA-----SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA  413 (478)
Q Consensus       341 ~v~Q~~~lf~~-ti~eNl~~~~-~~~-----~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa  413 (478)
                      |+||++.+|.+ |++||+.++. +..     ..+++.++++..+           ++........+|||||+||++||||
T Consensus        74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrl~lara  142 (213)
T TIGR01277        74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVG-----------IADYLDRLPEQLSGGQRQRVALARC  142 (213)
T ss_pred             EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcC-----------cHHHhhCCcccCCHHHHHHHHHHHH
Confidence            99999999975 9999998642 211     1223333444444           4444445567899999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          414 ILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ++++|+++||||||++||+.+++.+.+.|++..+  ++|+|++||+++.+.. ||++++|++|++++
T Consensus       143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~  209 (213)
T TIGR01277       143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKV  209 (213)
T ss_pred             HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEE
Confidence            9999999999999999999999999999998753  6899999999998765 99999999999976

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.3e-44  Score=353.59  Aligned_cols=212  Identities=26%  Similarity=0.432  Sum_probs=176.0

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++|+++.|++   +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus         2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   78 (256)
T TIGR03873         2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA   78 (256)
T ss_pred             ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence            689999999963   47999999999999999999999999999999999999999999999999998888888888899


Q ss_pred             EEecCCCCC-cccHHHHHhcCCCCCCH-HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCC
Q 048556          341 LVSQEPVLF-TSSIKDNINYGKDGASI-AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDP  418 (478)
Q Consensus       341 ~v~Q~~~lf-~~ti~eNl~~~~~~~~~-~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~  418 (478)
                      |+||++.++ ..|++||+.++...... ...........+.+.+..+  |+..........|||||+||++||||++.+|
T Consensus        79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p  156 (256)
T TIGR03873        79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALART--ELSHLADRDMSTLSGGERQRVHVARALAQEP  156 (256)
T ss_pred             EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence            999998654 56999999886321100 0000000111223444444  4445556677899999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          419 RILLLDEATSALDAESERVVQEALDKIMI-NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       419 ~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++
T Consensus       157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  217 (256)
T TIGR03873       157 KLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVA  217 (256)
T ss_pred             CEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEE
Confidence            99999999999999999999999998753 6899999999999855 99999999999875

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-44  Score=352.73  Aligned_cols=202  Identities=30%  Similarity=0.508  Sum_probs=171.0

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++|+++.|++   +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...     ++.++
T Consensus         2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~   73 (255)
T PRK11248          2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG   73 (255)
T ss_pred             EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence            689999999963   4799999999999999999999999999999999999999999999999988643     24689


Q ss_pred             EEecCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556          341 LVSQEPVLFT-SSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD  417 (478)
Q Consensus       341 ~v~Q~~~lf~-~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~  417 (478)
                      |++|++.+|+ .|++||+.++..  ....++.     ...+.++++.+  |++........+||||||||++|||||+.+
T Consensus        74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--gl~~~~~~~~~~LSgGq~qrl~laral~~~  146 (255)
T PRK11248         74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQR-----LEIAHQMLKKV--GLEGAEKRYIWQLSGGQRQRVGIARALAAN  146 (255)
T ss_pred             EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHH-----HHHHHHHHHHc--CChhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            9999999987 499999987531  1122211     11234455555  566556677889999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEe--CCEEee
Q 048556          418 PRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIH--QGKLVE  477 (478)
Q Consensus       418 ~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~--~G~i~~  477 (478)
                      |+++||||||++||+.+.+.+.+.|+++.  .++|+|++||+++.+.. ||++++|+  +|++++
T Consensus       147 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~  211 (255)
T PRK11248        147 PQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVE  211 (255)
T ss_pred             CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEE
Confidence            99999999999999999999999998873  37899999999998866 99999998  599876

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-44  Score=352.46  Aligned_cols=208  Identities=34%  Similarity=0.488  Sum_probs=174.2

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----CccEEEECCeecCCC--CH
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGVNLKEF--QL  332 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~~~~~--~~  332 (478)
                      -++++|+++.|++   +++|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++...  +.
T Consensus         4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~   80 (251)
T PRK14270          4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV   80 (251)
T ss_pred             EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence            4889999999963   4699999999999999999999999999999999999875     789999999998643  34


Q ss_pred             HHhhcceEEEecCCCCCcccHHHHHhcCCCC--C-CH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556          333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKDG--A-SI----AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK  405 (478)
Q Consensus       333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~--~-~~----~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~  405 (478)
                      ..+++.++|+||++.+|+.|++||+.++...  . +.    +++.++++..++.+       ++..........||||||
T Consensus        81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~~  153 (251)
T PRK14270         81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWD-------EVKDDLKKSALKLSGGQQ  153 (251)
T ss_pred             HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCch-------hhhhHhhCCcccCCHHHH
Confidence            5668889999999999999999999875311  1 11    12223333333221       223345567889999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||++||||++.+|+++||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|++|++++
T Consensus       154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~  226 (251)
T PRK14270        154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIE  226 (251)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEE
Confidence            9999999999999999999999999999999999999988767899999999998766 99999999999875

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-44  Score=352.23  Aligned_cols=209  Identities=30%  Similarity=0.488  Sum_probs=173.4

Q ss_pred             ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC--C---CccEEEECCeecCCC--C
Q 048556          259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD--P---QAGEVLIDGVNLKEF--Q  331 (478)
Q Consensus       259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~---~~G~i~~~g~~~~~~--~  331 (478)
                      +.++++|++++|++   +++|+|+||+|++||+++|+||||||||||+++|+|+++  |   ++|+|.++|.++...  +
T Consensus         3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~   79 (252)
T PRK14256          3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD   79 (252)
T ss_pred             cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence            45899999999963   469999999999999999999999999999999999986  4   689999999998643  3


Q ss_pred             HHHhhcceEEEecCCCCCcc-cHHHHHhcCCCC---CCHH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChH
Q 048556          332 LKWIRGKIGLVSQEPVLFTS-SIKDNINYGKDG---ASIA----EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGG  403 (478)
Q Consensus       332 ~~~~r~~i~~v~Q~~~lf~~-ti~eNl~~~~~~---~~~~----~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgG  403 (478)
                      ...+|+.++|+||++.+|.. |++||+.++...   .+.+    ++.++++..++.+++       .......+.+||||
T Consensus        80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G  152 (252)
T PRK14256         80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEV-------KDRLKSNAMELSGG  152 (252)
T ss_pred             hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hHHhhCCcCcCCHH
Confidence            45678899999999999984 999999875311   1111    223333333332211       22345678899999


Q ss_pred             HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          404 QKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       404 q~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||||++||||++.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus       153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~  227 (252)
T PRK14256        153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVE  227 (252)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEE
Confidence            999999999999999999999999999999999999999998777899999999998855 99999999999875

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-44  Score=352.68  Aligned_cols=208  Identities=32%  Similarity=0.504  Sum_probs=173.6

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----CccEEEECCeecCCC--CH
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGVNLKEF--QL  332 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~~~~~--~~  332 (478)
                      -|+++|+++.|++   +++++|+||++++||+++|+||||||||||+++|+|+++|     ++|+|.+||.++...  +.
T Consensus         3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~   79 (250)
T PRK14262          3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV   79 (250)
T ss_pred             eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence            3889999999963   4799999999999999999999999999999999999984     899999999988653  33


Q ss_pred             HHhhcceEEEecCCCCCcccHHHHHhcCCCC---CCHH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556          333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKDG---ASIA----EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK  405 (478)
Q Consensus       333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~---~~~~----~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~  405 (478)
                      ..+++.++|+||++.+|+.|++||+.++...   ...+    ++.++++..++.+.+       +........+|||||+
T Consensus        80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~  152 (250)
T PRK14262         80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV-------KSELNKPGTRLSGGQQ  152 (250)
T ss_pred             HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh-------HHHHhCChhhcCHHHH
Confidence            4567889999999999999999999875311   1111    223333333332211       2345677889999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||++||||++++|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus       153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~  225 (250)
T PRK14262        153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIE  225 (250)
T ss_pred             HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999988767899999999997655 99999999999874

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-44  Score=369.96  Aligned_cols=206  Identities=32%  Similarity=0.547  Sum_probs=176.3

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      .++++|++++|++   .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.  .++.+
T Consensus        19 ~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i   93 (377)
T PRK11607         19 LLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI   93 (377)
T ss_pred             eEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence            5999999999963   469999999999999999999999999999999999999999999999999987664  46789


Q ss_pred             EEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556          340 GLVSQEPVLFTS-SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK  416 (478)
Q Consensus       340 ~~v~Q~~~lf~~-ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~  416 (478)
                      +||+|++.+|+. |++||+.++...  .+..+..+     .+.+.++.+  |+.........+|||||+||++|||||++
T Consensus        94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~-----~v~~~l~~l--~L~~~~~~~~~~LSgGq~QRVaLARAL~~  166 (377)
T PRK11607         94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIAS-----RVNEMLGLV--HMQEFAKRKPHQLSGGQRQRVALARSLAK  166 (377)
T ss_pred             EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence            999999999987 999999987421  22222221     123444444  56666667788999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +|++|+||||||+||+.+++.+.+.|+++.  .+.|+|+|||+++.+.. ||+|++|++|++++
T Consensus       167 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~  230 (377)
T PRK11607        167 RPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQ  230 (377)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEE
Confidence            999999999999999999999999887764  36899999999998655 99999999999975

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.1e-44  Score=354.49  Aligned_cols=210  Identities=28%  Similarity=0.485  Sum_probs=176.8

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----CccEEEECCeecCCCC-HH
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGVNLKEFQ-LK  333 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~~~~~~-~~  333 (478)
                      .++++||+++|++   +++++|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++.+.+ ..
T Consensus        21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~   97 (276)
T PRK14271         21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL   97 (276)
T ss_pred             EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence            5899999999963   4799999999999999999999999999999999999986     6999999999987653 45


Q ss_pred             HhhcceEEEecCCCCCcccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhC--CCCccccccCCCCCCChHHHHHH
Q 048556          334 WIRGKIGLVSQEPVLFTSSIKDNINYGKD---GASIAEIMAAAELANAAKFIDSL--PQGLDTMVGEHGTQLSGGQKQRI  408 (478)
Q Consensus       334 ~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~---~~~~~~~~~a~~~~~~~~~i~~l--p~g~~t~~~~~g~~LSgGq~Qrl  408 (478)
                      .+++.++|+||++.+|+.|++||+.++..   ..+.++..+..     .+.+..+  +..+.+.+...+.+|||||+||+
T Consensus        98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl  172 (276)
T PRK14271         98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVA-----QARLTEVGLWDAVKDRLSDSPFRLSGGQQQLL  172 (276)
T ss_pred             HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHcCCCchhhhHhhCCcccCCHHHHHHH
Confidence            67889999999999999999999987632   12333332211     2223322  22223456677899999999999


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          409 AIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       409 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus       173 ~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~  242 (276)
T PRK14271        173 CLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVE  242 (276)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999988667899999999998765 99999999999975

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=100.00  E-value=2.1e-44  Score=331.02  Aligned_cols=171  Identities=53%  Similarity=0.908  Sum_probs=160.8

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++|++++|++. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus         1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   79 (171)
T cd03228           1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA   79 (171)
T ss_pred             CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence            4789999999743 236999999999999999999999999999999999999999999999999998888778888999


Q ss_pred             EEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCE
Q 048556          341 LVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI  420 (478)
Q Consensus       341 ~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~i  420 (478)
                      |++|++.+|+.|+.||+                                          |||||+||++||||++.+|++
T Consensus        80 ~~~~~~~~~~~t~~e~l------------------------------------------LS~G~~~rl~la~al~~~p~l  117 (171)
T cd03228          80 YVPQDPFLFSGTIRENI------------------------------------------LSGGQRQRIAIARALLRDPPI  117 (171)
T ss_pred             EEcCCchhccchHHHHh------------------------------------------hCHHHHHHHHHHHHHhcCCCE
Confidence            99999999999999998                                          999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCE
Q 048556          421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGK  474 (478)
Q Consensus       421 lilDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~  474 (478)
                      +||||||++||+.+.+.+.+.|+++.+++|+|++||+++.++.||++++|++|+
T Consensus       118 lllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~  171 (171)
T cd03228         118 LILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR  171 (171)
T ss_pred             EEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence            999999999999999999999998876789999999999998899999999985

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.9e-44  Score=352.60  Aligned_cols=208  Identities=33%  Similarity=0.464  Sum_probs=175.5

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC-----CCccEEEECCeecCC--CCH
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGVNLKE--FQL  332 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~--~~~  332 (478)
                      -++++||+++|++   .++|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|.++..  .+.
T Consensus        10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   86 (264)
T PRK14243         10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP   86 (264)
T ss_pred             EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence            4899999999963   479999999999999999999999999999999999986     479999999998853  345


Q ss_pred             HHhhcceEEEecCCCCCcccHHHHHhcCCCCC--C---HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 048556          333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKDGA--S---IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQR  407 (478)
Q Consensus       333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~--~---~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qr  407 (478)
                      ..+++.++|++|++.+|+.|++||+.++....  .   .+++.++++..++.+++       +......+.+|||||+||
T Consensus        87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~qr  159 (264)
T PRK14243         87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEV-------KDKLKQSGLSLSGGQQQR  159 (264)
T ss_pred             HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhH-------HHHhcCCcccCCHHHHHH
Confidence            66788999999999999889999998764211  1   12333344444443333       233456788999999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEe---------CCEEee
Q 048556          408 IAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIH---------QGKLVE  477 (478)
Q Consensus       408 l~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~---------~G~i~~  477 (478)
                      ++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|+         +|++++
T Consensus       160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~  239 (264)
T PRK14243        160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE  239 (264)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence            99999999999999999999999999999999999988767899999999998766 99999998         799876

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.6e-44  Score=355.00  Aligned_cols=208  Identities=32%  Similarity=0.558  Sum_probs=173.8

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCC--CCHHHhhcc
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE--FQLKWIRGK  338 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~--~~~~~~r~~  338 (478)
                      ++++|++++|++  .+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..  .+...+++.
T Consensus         2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   79 (275)
T PRK13639          2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT   79 (275)
T ss_pred             EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence            689999999963  2469999999999999999999999999999999999999999999999999852  234567889


Q ss_pred             eEEEecCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 048556          339 IGLVSQEP--VLFTSSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI  414 (478)
Q Consensus       339 i~~v~Q~~--~lf~~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal  414 (478)
                      ++|+||++  .+|+.|++||+.++..  ..+.++..+     .+.+.++.+  |+.........+|||||+||++||||+
T Consensus        80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LS~Gq~qrv~laral  152 (275)
T PRK13639         80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEK-----RVKEALKAV--GMEGFENKPPHHLSGGQKKRVAIAGIL  152 (275)
T ss_pred             eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence            99999997  4678899999987532  122222211     122334443  454455566789999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          415 LKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +.+|+++||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus       153 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~  217 (275)
T PRK13639        153 AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIK  217 (275)
T ss_pred             hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999875 37899999999998875 99999999999875

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=100.00  E-value=1.9e-44  Score=333.47  Aligned_cols=172  Identities=43%  Similarity=0.693  Sum_probs=159.4

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC--HHHhhcc
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ--LKWIRGK  338 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~--~~~~r~~  338 (478)
                      ++++|++++|++   +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++  ...+++.
T Consensus         1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   77 (178)
T cd03229           1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR   77 (178)
T ss_pred             CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence            478999999963   47999999999999999999999999999999999999999999999999998776  5677889


Q ss_pred             eEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556          339 IGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD  417 (478)
Q Consensus       339 i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~  417 (478)
                      ++|++|++.+|.+ |++||+.+.                                       |||||+||++||||++++
T Consensus        78 i~~~~q~~~~~~~~t~~~~l~~~---------------------------------------lS~G~~qr~~la~al~~~  118 (178)
T cd03229          78 IGMVFQDFALFPHLTVLENIALG---------------------------------------LSGGQQQRVALARALAMD  118 (178)
T ss_pred             EEEEecCCccCCCCCHHHheeec---------------------------------------CCHHHHHHHHHHHHHHCC
Confidence            9999999998865 999999764                                       999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCE
Q 048556          418 PRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGK  474 (478)
Q Consensus       418 ~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~  474 (478)
                      |+++||||||++||+.++..+.+.|+++.+  ++|+|++||+++.+.. ||++++|++|+
T Consensus       119 p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~  178 (178)
T cd03229         119 PDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK  178 (178)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence            999999999999999999999999988764  5899999999999885 99999999985

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=100.00  E-value=2.2e-44  Score=349.15  Aligned_cols=207  Identities=25%  Similarity=0.434  Sum_probs=170.0

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccC--CCCccEEEECCeecCCCCHHHh-hc
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFY--DPQAGEVLIDGVNLKEFQLKWI-RG  337 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~--~~~~G~i~~~g~~~~~~~~~~~-r~  337 (478)
                      ++++|++++|++   +++|+|+||+|++||+++|+||||||||||+++|+|++  +|++|+|.++|.++...+.... +.
T Consensus         1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~   77 (243)
T TIGR01978         1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA   77 (243)
T ss_pred             CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence            478999999963   47999999999999999999999999999999999994  7999999999999988776554 44


Q ss_pred             ceEEEecCCCCCcc-cHHHHHhcCCCC---------CCHHHHHHHHHHhcHHHHHHhCCCCccc-cccCCCC-CCChHHH
Q 048556          338 KIGLVSQEPVLFTS-SIKDNINYGKDG---------ASIAEIMAAAELANAAKFIDSLPQGLDT-MVGEHGT-QLSGGQK  405 (478)
Q Consensus       338 ~i~~v~Q~~~lf~~-ti~eNl~~~~~~---------~~~~~~~~a~~~~~~~~~i~~lp~g~~t-~~~~~g~-~LSgGq~  405 (478)
                      .++|+||++.+|++ |++||+.+....         .+.++..     ..+.+.++.+  |++. ....... .||||||
T Consensus        78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~LS~G~~  150 (243)
T TIGR01978        78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFL-----KLLKAKLALL--GMDEEFLNRSVNEGFSGGEK  150 (243)
T ss_pred             ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHH-----HHHHHHHHHc--CCchhhcccccccCcCHHHH
Confidence            59999999999987 899999764211         0111111     1223344443  4442 2334444 5999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh--cCEEEEEeCCEEee
Q 048556          406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN--ADLIAVIHQGKLVE  477 (478)
Q Consensus       406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~--~d~i~vl~~G~i~~  477 (478)
                      ||++|||||+.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+..  ||++++|++|++++
T Consensus       151 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~  225 (243)
T TIGR01978       151 KRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVK  225 (243)
T ss_pred             HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEE
Confidence            99999999999999999999999999999999999999875 46899999999999876  79999999999875

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=100.00  E-value=2.2e-44  Score=331.42  Aligned_cols=170  Identities=34%  Similarity=0.647  Sum_probs=157.5

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++|++++|++   .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+ ..+++.++
T Consensus         1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~   76 (173)
T cd03230           1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG   76 (173)
T ss_pred             CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence            468999999963   36999999999999999999999999999999999999999999999999987765 56788999


Q ss_pred             EEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCC
Q 048556          341 LVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR  419 (478)
Q Consensus       341 ~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~  419 (478)
                      |+||++.+|.+ |++||+.                                         |||||+||++||||++.+|+
T Consensus        77 ~~~q~~~~~~~~tv~~~~~-----------------------------------------LS~G~~qrv~laral~~~p~  115 (173)
T cd03230          77 YLPEEPSLYENLTVRENLK-----------------------------------------LSGGMKQRLALAQALLHDPE  115 (173)
T ss_pred             EEecCCccccCCcHHHHhh-----------------------------------------cCHHHHHHHHHHHHHHcCCC
Confidence            99999999987 9999984                                         99999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 048556          420 ILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKL  475 (478)
Q Consensus       420 ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i  475 (478)
                      ++||||||++||+.+.+.+.+.|+++. ++.|+|++||+++.+.. ||++++|++|++
T Consensus       116 illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i  173 (173)
T cd03230         116 LLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI  173 (173)
T ss_pred             EEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence            999999999999999999999999875 35899999999998875 999999999974

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.7e-44  Score=362.27  Aligned_cols=211  Identities=32%  Similarity=0.451  Sum_probs=173.8

Q ss_pred             cEEEEeEEEECCCCC-------CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH
Q 048556          260 DIELKDIYFSYPSRP-------GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL  332 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~-------~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~  332 (478)
                      -|+++|+++.|+...       ..++++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++..++.
T Consensus         5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~   84 (327)
T PRK11308          5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP   84 (327)
T ss_pred             eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence            489999999996311       2469999999999999999999999999999999999999999999999999988765


Q ss_pred             H---HhhcceEEEecCCC--CCcc-cHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCCh
Q 048556          333 K---WIRGKIGLVSQEPV--LFTS-SIKDNINYGK---DGASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSG  402 (478)
Q Consensus       333 ~---~~r~~i~~v~Q~~~--lf~~-ti~eNl~~~~---~~~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSg  402 (478)
                      +   .+|+.++||+|++.  +++. |+.+|+....   .....++.     ...+.++++.+  |++ ......+.+|||
T Consensus        85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~-----~~~~~~~l~~~--gL~~~~~~~~p~~LSg  157 (327)
T PRK11308         85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAER-----REKALAMMAKV--GLRPEHYDRYPHMFSG  157 (327)
T ss_pred             HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHH-----HHHHHHHHHHC--CCChHHhcCCCccCCH
Confidence            3   46788999999984  6654 8999886421   11122221     11223444443  443 234566789999


Q ss_pred             HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       403 Gq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||+||++|||||+.+|++||+||||++||..+++.|++.|+++.+  +.|+|+|||+++.+.. ||+|++|++|+++|
T Consensus       158 Gq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive  235 (327)
T PRK11308        158 GQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVE  235 (327)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999999999999999999988753  6899999999999976 99999999999987

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.8e-44  Score=369.22  Aligned_cols=194  Identities=35%  Similarity=0.531  Sum_probs=164.9

Q ss_pred             cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh----hcceEEEecCCCCCcc-
Q 048556          277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI----RGKIGLVSQEPVLFTS-  351 (478)
Q Consensus       277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~----r~~i~~v~Q~~~lf~~-  351 (478)
                      ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++..++..++    ++.++|+||++.+|+. 
T Consensus        42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~  121 (400)
T PRK10070         42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM  121 (400)
T ss_pred             EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence            48999999999999999999999999999999999999999999999999988876543    4679999999999975 


Q ss_pred             cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCC
Q 048556          352 SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA  429 (478)
Q Consensus       352 ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~  429 (478)
                      |++||+.++...  .+.++..+     .+.++++.+  |++........+||||||||++|||||+.+|++|||||||++
T Consensus       122 Tv~enl~~~~~~~~~~~~~~~~-----~~~e~L~~~--gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~  194 (400)
T PRK10070        122 TVLDNTAFGMELAGINAEERRE-----KALDALRQV--GLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSA  194 (400)
T ss_pred             CHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCcc
Confidence            999999986321  12222111     123344444  565566667789999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          430 LDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       430 LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||+.+++.+.+.|+++.  .++|+|++||+++.+.. ||+|++|++|++++
T Consensus       195 LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~  245 (400)
T PRK10070        195 LDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQ  245 (400)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEe
Confidence            99999999999998874  37899999999998765 99999999999875

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.8e-44  Score=351.68  Aligned_cols=208  Identities=35%  Similarity=0.508  Sum_probs=172.5

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----CccEEEECCeecCC--CCH
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGVNLKE--FQL  332 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~~~~--~~~  332 (478)
                      .++++|++++|++   .++|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++..  .+.
T Consensus         4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~   80 (258)
T PRK14241          4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP   80 (258)
T ss_pred             cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence            4899999999963   4699999999999999999999999999999999999974     69999999999853  345


Q ss_pred             HHhhcceEEEecCCCCCcc-cHHHHHhcCCCC---CCHH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHH
Q 048556          333 KWIRGKIGLVSQEPVLFTS-SIKDNINYGKDG---ASIA----EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQ  404 (478)
Q Consensus       333 ~~~r~~i~~v~Q~~~lf~~-ti~eNl~~~~~~---~~~~----~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq  404 (478)
                      ..+++.++|++|++.+|+. |++||+.++...   .+.+    ++.++++..++.+       ++.........+|||||
T Consensus        81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~  153 (258)
T PRK14241         81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWN-------EVKDRLDKPGGGLSGGQ  153 (258)
T ss_pred             HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCch-------hhhhHhhCCcccCCHHH
Confidence            5678899999999999975 999999865311   1111    2222233332211       12345566788999999


Q ss_pred             HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEe------CCEEee
Q 048556          405 KQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIH------QGKLVE  477 (478)
Q Consensus       405 ~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~------~G~i~~  477 (478)
                      |||++||||++.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|+      +|++++
T Consensus       154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~  233 (258)
T PRK14241        154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE  233 (258)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence            99999999999999999999999999999999999999988667899999999998765 99999997      799875

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.9e-44  Score=350.33  Aligned_cols=208  Identities=31%  Similarity=0.476  Sum_probs=172.9

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC--C---CccEEEECCeecCC--CCH
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD--P---QAGEVLIDGVNLKE--FQL  332 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~---~~G~i~~~g~~~~~--~~~  332 (478)
                      -++++||+++|++   +++|+|+||+|++||+++|+||||||||||+++|+|+++  |   ++|+|.++|.++..  .+.
T Consensus         5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~   81 (252)
T PRK14255          5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV   81 (252)
T ss_pred             eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence            4899999999963   479999999999999999999999999999999999975  4   58999999998864  334


Q ss_pred             HHhhcceEEEecCCCCCcccHHHHHhcCCC--CC-CH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556          333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKD--GA-SI----AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK  405 (478)
Q Consensus       333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~--~~-~~----~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~  405 (478)
                      ..+++.++|+||++.+|+.|+++|+.++..  .. ..    +++.++++..++.       .++.........+|||||+
T Consensus        82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~i~~~~~~~~~~LS~Gq~  154 (252)
T PRK14255         82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIW-------DEVKDHLHESALSLSGGQQ  154 (252)
T ss_pred             HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCc-------cchhhHHhcCcccCCHHHH
Confidence            566788999999999999999999987521  11 11    1222222222221       1233445667889999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||++||||++.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++
T Consensus       155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~  227 (252)
T PRK14255        155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIE  227 (252)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999988767899999999999865 99999999999975

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.4e-44  Score=354.20  Aligned_cols=209  Identities=34%  Similarity=0.524  Sum_probs=173.8

Q ss_pred             ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC-----CCccEEEECCeecCC--CC
Q 048556          259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGVNLKE--FQ  331 (478)
Q Consensus       259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~--~~  331 (478)
                      ..++++|++++|++   +++|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|.++.+  .+
T Consensus        38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~  114 (285)
T PRK14254         38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD  114 (285)
T ss_pred             ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence            35899999999963   479999999999999999999999999999999999997     689999999999864  34


Q ss_pred             HHHhhcceEEEecCCCCCcccHHHHHhcCCCC--CC---HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHH
Q 048556          332 LKWIRGKIGLVSQEPVLFTSSIKDNINYGKDG--AS---IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQ  406 (478)
Q Consensus       332 ~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~--~~---~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Q  406 (478)
                      ...+++.++|+||++.+|+.|++||+.++...  ..   .+++.++++..++.+       .+...+...+.+|||||||
T Consensus       115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~i~~~~~~~~~~LSgGe~q  187 (285)
T PRK14254        115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWD-------EVKDQLDSSGLDLSGGQQQ  187 (285)
T ss_pred             hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCc-------hhHHHHhCCcccCCHHHHH
Confidence            55678899999999999988999999875311  11   122333333333221       1123456778899999999


Q ss_pred             HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEE-EEeCCEEee
Q 048556          407 RIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIA-VIHQGKLVE  477 (478)
Q Consensus       407 rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~-vl~~G~i~~  477 (478)
                      |++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. |||++ +|++|++++
T Consensus       188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~  260 (285)
T PRK14254        188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVE  260 (285)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEE
Confidence            999999999999999999999999999999999999998766899999999999876 99975 569999975

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.3e-44  Score=349.07  Aligned_cols=209  Identities=33%  Similarity=0.520  Sum_probs=172.0

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCC-----ccEEEECCeecCC--CCHH
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ-----AGEVLIDGVNLKE--FQLK  333 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~-----~G~i~~~g~~~~~--~~~~  333 (478)
                      ++++|++++|++   +++++|+||+|++||+++|+||||||||||+++|+|+++|+     +|+|.++|.++.+  .+..
T Consensus         5 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~   81 (252)
T PRK14272          5 LSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV   81 (252)
T ss_pred             EEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence            789999999963   47999999999999999999999999999999999999874     8999999999865  3445


Q ss_pred             HhhcceEEEecCCCCCcc-cHHHHHhcCCC--CC-CHHHHHHHHHHhcHHHHHHhC--CCCccccccCCCCCCChHHHHH
Q 048556          334 WIRGKIGLVSQEPVLFTS-SIKDNINYGKD--GA-SIAEIMAAAELANAAKFIDSL--PQGLDTMVGEHGTQLSGGQKQR  407 (478)
Q Consensus       334 ~~r~~i~~v~Q~~~lf~~-ti~eNl~~~~~--~~-~~~~~~~a~~~~~~~~~i~~l--p~g~~t~~~~~g~~LSgGq~Qr  407 (478)
                      .+|+.++|++|++.+|+. |++||+.++..  .. ..++..+.++     +.+..+  ..++.........+|||||+||
T Consensus        82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~-----~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr  156 (252)
T PRK14272         82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAE-----RSLRGAALWDEVKDRLKTPATGLSGGQQQR  156 (252)
T ss_pred             HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHH-----HHHHHcCcchhhhhhhcCCcccCCHHHHHH
Confidence            678889999999999985 99999986532  11 2222222211     111111  1112223345578999999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          408 IAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       408 l~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ++||||++++|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus       157 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  227 (252)
T PRK14272        157 LCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVE  227 (252)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999988767999999999999886 99999999999975

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=4.3e-44  Score=352.37  Aligned_cols=212  Identities=25%  Similarity=0.383  Sum_probs=176.9

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCC--------ccEEEECCeecCCCCH
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ--------AGEVLIDGVNLKEFQL  332 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~--------~G~i~~~g~~~~~~~~  332 (478)
                      ++++|++++|++   +++|+|+||+|++||+++|+||||||||||+++|+|+++|+        +|+|.++|.++...+.
T Consensus         2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~   78 (272)
T PRK13547          2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA   78 (272)
T ss_pred             eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence            689999999963   47999999999999999999999999999999999999998        9999999999988887


Q ss_pred             HHhhcceEEEecCCC-CCcccHHHHHhcCCC-CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 048556          333 KWIRGKIGLVSQEPV-LFTSSIKDNINYGKD-GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAI  410 (478)
Q Consensus       333 ~~~r~~i~~v~Q~~~-lf~~ti~eNl~~~~~-~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~l  410 (478)
                      ..+++.++|+||++. +|..|++||+.++.. ...............+.+.++.+  |+++.++....+|||||+||++|
T Consensus        79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~l  156 (272)
T PRK13547         79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA--GATALVGRDVTTLSGGELARVQF  156 (272)
T ss_pred             HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHH
Confidence            788888999999986 567899999987631 11000000000111123444444  67777778889999999999999


Q ss_pred             HHHHc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          411 ARAIL---------KDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       411 ARall---------~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||||+         .+|+++||||||++||+.+.+.+.+.|+++.+  ++|+|+|||+++.+.. ||++++|++|++++
T Consensus       157 aral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~  235 (272)
T PRK13547        157 ARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVA  235 (272)
T ss_pred             HHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEE
Confidence            99999         59999999999999999999999999998753  6899999999998865 99999999999875

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.4e-44  Score=343.70  Aligned_cols=199  Identities=30%  Similarity=0.503  Sum_probs=168.3

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++||+++|++   .+  .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..  ++.++
T Consensus         2 l~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i~   74 (232)
T PRK10771          2 LKLTDITWLYHH---LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVS   74 (232)
T ss_pred             eEEEEEEEEECC---cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccEE
Confidence            689999999963   22  399999999999999999999999999999999999999999999998766542  56899


Q ss_pred             EEecCCCCCcc-cHHHHHhcCC-CCC--C---HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556          341 LVSQEPVLFTS-SIKDNINYGK-DGA--S---IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA  413 (478)
Q Consensus       341 ~v~Q~~~lf~~-ti~eNl~~~~-~~~--~---~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa  413 (478)
                      |+||++.+|++ |++||+.++. +..  .   ++++.++++..+           ++..+......|||||+||++||||
T Consensus        75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~lara  143 (232)
T PRK10771         75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMG-----------IEDLLARLPGQLSGGQRQRVALARC  143 (232)
T ss_pred             EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcC-----------cHHHHhCCcccCCHHHHHHHHHHHH
Confidence            99999999986 9999998753 211  1   223344444444           4444455567899999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          414 ILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ++++|+++||||||++||+.+++.+.+.|+++.+  ++|+|++||+++.+.. ||++++|++|++++
T Consensus       144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~  210 (232)
T PRK10771        144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAW  210 (232)
T ss_pred             HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999988743  6899999999998865 99999999999874

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.9e-44  Score=351.76  Aligned_cols=208  Identities=32%  Similarity=0.486  Sum_probs=174.5

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----CccEEEECCeecCC--CCH
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGVNLKE--FQL  332 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~~~~--~~~  332 (478)
                      .++++|++++|++   +++++|+||+|++||+++|+|+||||||||+++|+|+++|     ++|+|.++|+++..  .+.
T Consensus         7 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   83 (259)
T PRK14260          7 AIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI   83 (259)
T ss_pred             eEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence            5899999999963   4699999999999999999999999999999999999985     48999999998854  344


Q ss_pred             HHhhcceEEEecCCCCCcccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556          333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKDG---ASI----AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK  405 (478)
Q Consensus       333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~---~~~----~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~  405 (478)
                      ..+++.++|+||++.+|+.|++||+.++...   ..+    +.+.++++..++.+.+       .......+..|||||+
T Consensus        84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~  156 (259)
T PRK14260         84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEV-------KDKLNKSALGLSGGQQ  156 (259)
T ss_pred             HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh-------hhHhcCCcccCCHHHH
Confidence            5678899999999999999999999875311   111    1233344444433222       2344567889999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEe-----CCEEee
Q 048556          406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIH-----QGKLVE  477 (478)
Q Consensus       406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~-----~G~i~~  477 (478)
                      ||++|||||+++|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|+     +|++++
T Consensus       157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~  234 (259)
T PRK14260        157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVE  234 (259)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEE
Confidence            9999999999999999999999999999999999999988767899999999999876 99999997     599875

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.3e-44  Score=346.81  Aligned_cols=205  Identities=35%  Similarity=0.553  Sum_probs=173.8

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++|+++.|++   +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.  .++.++
T Consensus         1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~   75 (237)
T TIGR00968         1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG   75 (237)
T ss_pred             CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence            478999999963   469999999999999999999999999999999999999999999999999876543  367899


Q ss_pred             EEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556          341 LVSQEPVLFTS-SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD  417 (478)
Q Consensus       341 ~v~Q~~~lf~~-ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~  417 (478)
                      |+||++.+|++ |++||+.++...  .+..+..     ..+.++++.+  |+.........+|||||+||++||||++++
T Consensus        76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrl~laral~~~  148 (237)
T TIGR00968        76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIK-----ARVEELLELV--QLEGLGDRYPNQLSGGQRQRVALARALAVE  148 (237)
T ss_pred             EEecChhhccCCcHHHHHHhHHHhcCCCHHHHH-----HHHHHHHHHc--CCHhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            99999999986 999999876431  1111111     1234455555  344445566789999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          418 PRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       418 ~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |+++||||||++||+.+++.+.+.|++..+  ++|+|++||+++.+.. ||++++|++|++++
T Consensus       149 p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~  211 (237)
T TIGR00968       149 PQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQ  211 (237)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEE
Confidence            999999999999999999999999998754  6899999999998766 99999999999975

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.8e-44  Score=351.36  Aligned_cols=210  Identities=32%  Similarity=0.485  Sum_probs=177.1

Q ss_pred             CccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----CccEEEECCeecC----
Q 048556          258 RGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGVNLK----  328 (478)
Q Consensus       258 ~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~~~----  328 (478)
                      .+.|+++|++++|++   +++|+|+||+|++||+++|+||||||||||+++|+|+.+|     ++|+|.++|.++.    
T Consensus        14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~   90 (265)
T PRK14252         14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP   90 (265)
T ss_pred             CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence            356999999999963   4799999999999999999999999999999999999875     7999999998774    


Q ss_pred             CCCHHHhhcceEEEecCCCCCcccHHHHHhcCCC--CCC-----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 048556          329 EFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKD--GAS-----IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLS  401 (478)
Q Consensus       329 ~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~--~~~-----~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LS  401 (478)
                      ..+...+++.++|+||++.+|.+|++||+.++..  ...     ++++.++++.+++.+       ++.+.++....+||
T Consensus        91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS  163 (265)
T PRK14252         91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD-------EVKDRLGDLAFNLS  163 (265)
T ss_pred             ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch-------hhhHHHhCCcccCC
Confidence            2344567889999999999999999999987531  111     233344444433322       33455667788999


Q ss_pred             hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       402 gGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |||+||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||++++|++|++++
T Consensus       164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~  240 (265)
T PRK14252        164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIE  240 (265)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999988767899999999999865 99999999999975

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=100.00  E-value=4.4e-44  Score=344.86  Aligned_cols=205  Identities=35%  Similarity=0.543  Sum_probs=172.9

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      |+++|++++|++   +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+..  ++.++
T Consensus         1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~--~~~i~   75 (232)
T cd03300           1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPH--KRPVN   75 (232)
T ss_pred             CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChh--hcceE
Confidence            468999999963   4699999999999999999999999999999999999999999999999998876543  67899


Q ss_pred             EEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556          341 LVSQEPVLFTS-SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD  417 (478)
Q Consensus       341 ~v~Q~~~lf~~-ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~  417 (478)
                      |++|++.+|.+ |++||+.++...  .+.+...+     .+.+.++.+  |++..+.....+|||||+||++||||++.+
T Consensus        76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrl~laral~~~  148 (232)
T cd03300          76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKE-----RVAEALDLV--QLEGYANRKPSQLSGGQQQRVAIARALVNE  148 (232)
T ss_pred             EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence            99999999976 999999875311  11111111     122333333  555556666789999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          418 PRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       418 ~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |+++||||||++||+.+++.+.+.|+++.+  ++|+|++||+++.+.. ||++++|++|++++
T Consensus       149 p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~  211 (232)
T cd03300         149 PKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQ  211 (232)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEe
Confidence            999999999999999999999999998753  7899999999998765 99999999999875

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=100.00  E-value=5.8e-44  Score=339.76  Aligned_cols=203  Identities=33%  Similarity=0.506  Sum_probs=171.0

Q ss_pred             EEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCC----CHHHhhc
Q 048556          262 ELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEF----QLKWIRG  337 (478)
Q Consensus       262 ~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~----~~~~~r~  337 (478)
                      ++ |++++|++   +.+  |+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++...    +....++
T Consensus         3 ~~-~l~~~~~~---~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   75 (214)
T cd03297           3 CV-DIEKRLPD---FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR   75 (214)
T ss_pred             ee-eeeEecCC---eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence            44 89999964   234  99999999 99999999999999999999999999999999999987643    2335678


Q ss_pred             ceEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556          338 KIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK  416 (478)
Q Consensus       338 ~i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~  416 (478)
                      .++|+||++.+|+. |++||+.++......++     ....+.++++.+  |++......+.+||||||||++||||++.
T Consensus        76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~  148 (214)
T cd03297          76 KIGLVFQQYALFPHLNVRENLAFGLKRKRNRE-----DRISVDELLDLL--GLDHLLNRYPAQLSGGEKQRVALARALAA  148 (214)
T ss_pred             cEEEEecCCccCCCCCHHHHHHHHHhhCCHHH-----HHHHHHHHHHHc--CCHhHhhcCcccCCHHHHHHHHHHHHHhc
Confidence            89999999999975 99999987643222211     112234566665  67767778889999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEeeC
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVEK  478 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~  478 (478)
                      +|+++||||||++||+.+.+.+.+.|+++.+  ++|+|++||+++.+.. ||++++|++|++++.
T Consensus       149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~  213 (214)
T cd03297         149 QPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYI  213 (214)
T ss_pred             CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEec
Confidence            9999999999999999999999999988753  6899999999998865 999999999999763

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.5e-44  Score=347.44  Aligned_cols=207  Identities=31%  Similarity=0.536  Sum_probs=174.9

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC-----CCccEEEECCeecCCC--CHH
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGVNLKEF--QLK  333 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~~--~~~  333 (478)
                      ++++||++.|++   +++++|+||+|++||+++|+||||||||||+++|+|+.+     |++|+|.+||.++...  +..
T Consensus         4 l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~   80 (250)
T PRK14266          4 IEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV   80 (250)
T ss_pred             EEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence            789999999963   479999999999999999999999999999999999864     4899999999998653  456


Q ss_pred             HhhcceEEEecCCCCCcccHHHHHhcCCC--CC-CH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHH
Q 048556          334 WIRGKIGLVSQEPVLFTSSIKDNINYGKD--GA-SI----AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQ  406 (478)
Q Consensus       334 ~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~--~~-~~----~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Q  406 (478)
                      .+++.++|+||++.+|+.|++||+.++..  .. +.    +++.++++..++.+++.       ..++..+.+|||||+|
T Consensus        81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~q  153 (250)
T PRK14266         81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK-------DKLDKSALGLSGGQQQ  153 (250)
T ss_pred             HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHH-------HHHhCCcccCCHHHHH
Confidence            67889999999999999999999987531  11 11    22333444444433332       2345678899999999


Q ss_pred             HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          407 RIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       407 rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||++..+.. ||++++|++|++++
T Consensus       154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~  225 (250)
T PRK14266        154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIE  225 (250)
T ss_pred             HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEE
Confidence            999999999999999999999999999999999999988777899999999998776 89999999999975

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.8e-44  Score=361.25  Aligned_cols=209  Identities=27%  Similarity=0.393  Sum_probs=169.0

Q ss_pred             EEEEeEEEECCCCCC-CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC----CCccEEEECCeecCCCCHHHh
Q 048556          261 IELKDIYFSYPSRPG-EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD----PQAGEVLIDGVNLKEFQLKWI  335 (478)
Q Consensus       261 i~~~~v~~~y~~~~~-~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~----~~~G~i~~~g~~~~~~~~~~~  335 (478)
                      ++++|+++.|+.... .++|+|+||+|++||++||+||||||||||+++|+|+++    |++|+|.++|.++.+++.+++
T Consensus         4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~   83 (326)
T PRK11022          4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER   83 (326)
T ss_pred             EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence            789999999964321 369999999999999999999999999999999999997    489999999999988887665


Q ss_pred             h----cceEEEecCCC--CCcc-cHHHHHh----cCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcc---ccccCCCCCCC
Q 048556          336 R----GKIGLVSQEPV--LFTS-SIKDNIN----YGKDGASIAEIMAAAELANAAKFIDSLPQGLD---TMVGEHGTQLS  401 (478)
Q Consensus       336 r----~~i~~v~Q~~~--lf~~-ti~eNl~----~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~---t~~~~~g~~LS  401 (478)
                      +    +.++||||++.  +++. |+.+|+.    .... ...++..     ..+.++++.+  |++   ..+...+.+||
T Consensus        84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~-~~~~~~~-----~~~~~~L~~~--gL~~~~~~l~~~p~~LS  155 (326)
T PRK11022         84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQG-GNKKTRR-----QRAIDLLNQV--GIPDPASRLDVYPHQLS  155 (326)
T ss_pred             HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcC-CCHHHHH-----HHHHHHHHHC--CCCChHHHHhCCchhCC
Confidence            4    36999999985  4443 6655543    2211 1211111     1122334433  443   34567789999


Q ss_pred             hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       402 gGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |||+||++|||||+.+|+++|+||||++||+.++..+++.|+++.+  +.|+|+|||+++.+.. ||+|+||++|+|+|
T Consensus       156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive  234 (326)
T PRK11022        156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE  234 (326)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999998753  6899999999999865 99999999999987

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=6.8e-44  Score=336.31  Aligned_cols=189  Identities=22%  Similarity=0.395  Sum_probs=162.4

Q ss_pred             cEEEEeEEEECCCC-CCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC---CCccEEEECCeecCCCCHHHh
Q 048556          260 DIELKDIYFSYPSR-PGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD---PQAGEVLIDGVNLKEFQLKWI  335 (478)
Q Consensus       260 ~i~~~~v~~~y~~~-~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~  335 (478)
                      .+.++||+|.|+.. .++++|+|+||+|++||+++|+||||||||||+++|+|+++   |++|+|.++|.++...+ ...
T Consensus         3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~   81 (202)
T cd03233           3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY   81 (202)
T ss_pred             eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence            37899999999753 34579999999999999999999999999999999999999   89999999999987764 356


Q ss_pred             hcceEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 048556          336 RGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI  414 (478)
Q Consensus       336 r~~i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal  414 (478)
                      ++.++|++|++.+|.+ |++||+.++...          .                  ..+....|||||+||++||||+
T Consensus        82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~----------~------------------~~~~~~~LS~Ge~qrl~laral  133 (202)
T cd03233          82 PGEIIYVSEEDVHFPTLTVRETLDFALRC----------K------------------GNEFVRGISGGERKRVSIAEAL  133 (202)
T ss_pred             cceEEEEecccccCCCCcHHHHHhhhhhh----------c------------------cccchhhCCHHHHHHHHHHHHH
Confidence            7889999999988875 999999764210          0                  2345578999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEec-Cchhh-hhcCEEEEEeCCEEee
Q 048556          415 LKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAH-RLSTV-RNADLIAVIHQGKLVE  477 (478)
Q Consensus       415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH-~~~~~-~~~d~i~vl~~G~i~~  477 (478)
                      +++|+++||||||++||+.+++.+.+.|+++.+  +.|+|+++| +++.+ +.||++++|++|++++
T Consensus       134 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~  200 (202)
T cd03233         134 VSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIY  200 (202)
T ss_pred             hhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEe
Confidence            999999999999999999999999999998754  457666655 45665 4599999999999975

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.5e-44  Score=355.02  Aligned_cols=208  Identities=31%  Similarity=0.466  Sum_probs=172.6

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC-----CCccEEEECCeecCCC--CH
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGVNLKEF--QL  332 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~~--~~  332 (478)
                      .++++|++++|++   .++|+|+||+|++||+++|+||||||||||+++|+|+.+     |++|+|.+||.++...  +.
T Consensus        39 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~  115 (286)
T PRK14275         39 HVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE  115 (286)
T ss_pred             EEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence            5899999999963   369999999999999999999999999999999999864     4999999999988643  33


Q ss_pred             HHhhcceEEEecCCCCCcccHHHHHhcCCC--CC-CHH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556          333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKD--GA-SIA----EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK  405 (478)
Q Consensus       333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~--~~-~~~----~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~  405 (478)
                      ..+|+.++|++|++.+|+.|++||+.++..  .. +.+    ++.++++..++.+       ++..........|||||+
T Consensus       116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LSgGq~  188 (286)
T PRK14275        116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWD-------EVSDRLDKNALGLSGGQQ  188 (286)
T ss_pred             HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCcc-------chhhHhhCChhhCCHHHH
Confidence            456889999999999998899999997532  11 111    2222232222211       122344567889999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||++|||||+.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus       189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~  261 (286)
T PRK14275        189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVE  261 (286)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999988767899999999999865 99999999999875

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=7e-44  Score=330.14  Aligned_cols=209  Identities=26%  Similarity=0.430  Sum_probs=182.7

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh-hcce
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI-RGKI  339 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i  339 (478)
                      ++++|++..|..   .++|+++||++++||+++++||||+|||||++.|+|+.+|.+|+|.++|.|++..++.+. |.-+
T Consensus         4 L~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi   80 (237)
T COG0410           4 LEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI   80 (237)
T ss_pred             eeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence            789999999963   579999999999999999999999999999999999999999999999999999987765 6669


Q ss_pred             EEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCC
Q 048556          340 GLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDP  418 (478)
Q Consensus       340 ~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~  418 (478)
                      +||||...+|+. ||.|||.+|.....+++-    ....+++..+-+| -+.......+.+|||||+|.+||||||+.+|
T Consensus        81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~----~~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~P  155 (237)
T COG0410          81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEA----QERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSRP  155 (237)
T ss_pred             EeCcccccchhhCcHHHHHhhhhhccccccc----ccccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcCC
Confidence            999999999987 999999998533222111    1111445566777 4778888999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEee
Q 048556          419 RILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVR-NADLIAVIHQGKLVE  477 (478)
Q Consensus       419 ~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~  477 (478)
                      ++|+|||||.+|-|.-.++|++.|+++++  +-||++|-++....- -+||.+||++|+|+.
T Consensus       156 klLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~  217 (237)
T COG0410         156 KLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVL  217 (237)
T ss_pred             CEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEE
Confidence            99999999999999999999999999874  459999999998765 499999999999985

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=100.00  E-value=3.7e-44  Score=358.49  Aligned_cols=194  Identities=22%  Similarity=0.445  Sum_probs=165.5

Q ss_pred             CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc-cHH
Q 048556          276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIK  354 (478)
Q Consensus       276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~  354 (478)
                      +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+.++|+||++.+|+. |++
T Consensus         6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~   84 (302)
T TIGR01188         6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR   84 (302)
T ss_pred             eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence            479999999999999999999999999999999999999999999999999876 345678899999999999986 999


Q ss_pred             HHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCH
Q 048556          355 DNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA  432 (478)
Q Consensus       355 eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~  432 (478)
                      ||+.+...  ..+.++..+     .+.+.++.+  |+.........+||||||||++|||||+++|+++||||||++||+
T Consensus        85 e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~  157 (302)
T TIGR01188        85 ENLEMMGRLYGLPKDEAEE-----RAEELLELF--ELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP  157 (302)
T ss_pred             HHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence            99987431  112222111     123445554  555556667789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          433 ESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       433 ~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      .+++.+++.|+++. +++|+|++||+++.+.. ||+|++|++|++++
T Consensus       158 ~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~  204 (302)
T TIGR01188       158 RTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIA  204 (302)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence            99999999999875 46899999999999876 99999999999874

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=100.00  E-value=8.2e-44  Score=348.36  Aligned_cols=208  Identities=28%  Similarity=0.441  Sum_probs=174.1

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCee-----cCCCCHHH
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVN-----LKEFQLKW  334 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~-----~~~~~~~~  334 (478)
                      -++++|++++|++   +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+     +.+.+...
T Consensus         6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~   82 (258)
T PRK11701          6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE   82 (258)
T ss_pred             eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence            3899999999963   479999999999999999999999999999999999999999999999998     77766544


Q ss_pred             ----hhcceEEEecCCC--CCc-ccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChH
Q 048556          335 ----IRGKIGLVSQEPV--LFT-SSIKDNINYGK---DGASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGG  403 (478)
Q Consensus       335 ----~r~~i~~v~Q~~~--lf~-~ti~eNl~~~~---~~~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgG  403 (478)
                          .++.++|+||++.  ++. .|+.+|+.+..   ......+..     ..+.++++.+  |++ +.++..+.+||||
T Consensus        83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LS~G  155 (258)
T PRK11701         83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIR-----ATAGDWLERV--EIDAARIDDLPTTFSGG  155 (258)
T ss_pred             HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHH-----HHHHHHHHHc--CCChhHHhCCCccCCHH
Confidence                3567999999984  444 38888886421   111112221     1235667766  454 4677889999999


Q ss_pred             HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          404 QKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       404 q~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |+||++|||||+.+|+++||||||++||+.+++.+.+.|+++.+  +.|+|++||+++.+.. ||+|++|++|++++
T Consensus       156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~  232 (258)
T PRK11701        156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVE  232 (258)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999988753  6899999999999975 99999999999975

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=100.00  E-value=5.5e-44  Score=360.42  Aligned_cols=212  Identities=25%  Similarity=0.435  Sum_probs=172.6

Q ss_pred             cEEEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCC---ccEEEECCeecCCCCHHHh
Q 048556          260 DIELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGVNLKEFQLKWI  335 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~  335 (478)
                      -++++|+++.|+... ..++++|+||+|++||+++|+|+||||||||+++|+|+++|+   +|+|.+||.++..++.+++
T Consensus        12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~   91 (330)
T PRK09473         12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL   91 (330)
T ss_pred             eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence            489999999996321 246999999999999999999999999999999999999996   9999999999998887665


Q ss_pred             h----cceEEEecCC--CCCcc-cHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHH--hCCCCccccccCCCCCCChH
Q 048556          336 R----GKIGLVSQEP--VLFTS-SIKDNINYGK---DGASIAEIMAAAELANAAKFID--SLPQGLDTMVGEHGTQLSGG  403 (478)
Q Consensus       336 r----~~i~~v~Q~~--~lf~~-ti~eNl~~~~---~~~~~~~~~~a~~~~~~~~~i~--~lp~g~~t~~~~~g~~LSgG  403 (478)
                      +    +.|+||||++  .+++. |+.+|+....   ...+.++..+.     +.+.++  .+|++. ..++..+.+||||
T Consensus        92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~-----~~~~L~~vgL~~~~-~~~~~~p~~LSgG  165 (330)
T PRK09473         92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEE-----SVRMLDAVKMPEAR-KRMKMYPHEFSGG  165 (330)
T ss_pred             HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHcCCCChH-HHhcCCcccCCHH
Confidence            3    4799999998  45554 7877775321   11232222111     112222  234332 3457788999999


Q ss_pred             HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          404 QKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       404 q~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |+||++|||||+.+|+++|+||||++||..++..+.+.|+++.+  +.|+|+|||+++.+.. ||+|+||++|+|+|
T Consensus       166 ~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive  242 (330)
T PRK09473        166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTME  242 (330)
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999988754  6899999999999875 99999999999987

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-43  Score=349.07  Aligned_cols=208  Identities=33%  Similarity=0.452  Sum_probs=174.7

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----CccEEEECCeecCC--CCH
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGVNLKE--FQL  332 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~~~~--~~~  332 (478)
                      -|+++|+++.|++   +++|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|+++..  .+.
T Consensus        20 ~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~   96 (274)
T PRK14265         20 VFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS   96 (274)
T ss_pred             eEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence            5999999999963   4699999999999999999999999999999999999863     58999999999854  344


Q ss_pred             HHhhcceEEEecCCCCCcccHHHHHhcCCCCC-----CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 048556          333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKDGA-----SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQR  407 (478)
Q Consensus       333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~-----~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qr  407 (478)
                      ..+|+.++|+||++.+|+.|++||+.++....     .++++.++++.+++.+.+       .......+..|||||+||
T Consensus        97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~qr  169 (274)
T PRK14265         97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEV-------KDKLKEKGTALSGGQQQR  169 (274)
T ss_pred             HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhh-------HHHhcCCcccCCHHHHHH
Confidence            56788999999999999889999998763211     122233344444433222       234456778999999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEe---------CCEEee
Q 048556          408 IAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIH---------QGKLVE  477 (478)
Q Consensus       408 l~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~---------~G~i~~  477 (478)
                      ++|||||+++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|+         +|++++
T Consensus       170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~  249 (274)
T PRK14265        170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE  249 (274)
T ss_pred             HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence            99999999999999999999999999999999999988777899999999998865 99999997         799875

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=100.00  E-value=9.6e-44  Score=348.65  Aligned_cols=213  Identities=26%  Similarity=0.416  Sum_probs=174.3

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCC---ccEEEECCeecCCC-----C
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGVNLKEF-----Q  331 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~-----~  331 (478)
                      -++++||++.|++   +++++|+||++++||+++|+||||||||||+++|+|+++|+   +|+|.++|.++...     +
T Consensus         4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~   80 (262)
T PRK09984          4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD   80 (262)
T ss_pred             EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence            3899999999963   47999999999999999999999999999999999999986   49999999988653     2


Q ss_pred             HHHhhcceEEEecCCCCCcc-cHHHHHhcCCCCCCH--H---HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556          332 LKWIRGKIGLVSQEPVLFTS-SIKDNINYGKDGASI--A---EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK  405 (478)
Q Consensus       332 ~~~~r~~i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~--~---~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~  405 (478)
                      ...+++.++|+||++.+|++ |++||+.++......  .   ..........+.+.++.+  |++.........||||||
T Consensus        81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~  158 (262)
T PRK09984         81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRV--GMVHFAHQRVSTLSGGQQ  158 (262)
T ss_pred             HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHc--CCHHHHhCCccccCHHHH
Confidence            35567889999999998885 999999876421100  0   000001112234455544  555556677889999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+  ++|+|++||+++.+.. ||+|++|++|++++
T Consensus       159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~  233 (262)
T PRK09984        159 QRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFY  233 (262)
T ss_pred             HHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999999999999999998753  6899999999998654 99999999999864

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1e-43  Score=348.27  Aligned_cols=208  Identities=31%  Similarity=0.496  Sum_probs=174.1

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCC-----ccEEEECCeecCC--CCH
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ-----AGEVLIDGVNLKE--FQL  332 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~-----~G~i~~~g~~~~~--~~~  332 (478)
                      .++++|++++|++   .++|+|+||++++||+++|+||||||||||+++|+|+++|+     +|+|.++|.++..  .+.
T Consensus         7 ~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~   83 (261)
T PRK14258          7 AIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL   83 (261)
T ss_pred             eEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence            5999999999963   36999999999999999999999999999999999999985     8999999998753  344


Q ss_pred             HHhhcceEEEecCCCCCcccHHHHHhcCCCC--C-CH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556          333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKDG--A-SI----AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK  405 (478)
Q Consensus       333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~--~-~~----~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~  405 (478)
                      ..+++.++|+||++.+|+.|++||+.++...  . +.    +++.++++..++.++       ++...++.+..|||||+
T Consensus        84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LSgGq~  156 (261)
T PRK14258         84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDE-------IKHKIHKSALDLSGGQQ  156 (261)
T ss_pred             HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcch-------hhhHhcCCcccCCHHHH
Confidence            5678889999999999999999999875211  1 11    123333333333222       22345677889999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeC-----CEEee
Q 048556          406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQ-----GKLVE  477 (478)
Q Consensus       406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~-----G~i~~  477 (478)
                      ||++||||++++|+++||||||++||+.+.+.+.+.|+++.  .++|+|++||+++.+.. ||+|++|++     |++++
T Consensus       157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~  236 (261)
T PRK14258        157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE  236 (261)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence            99999999999999999999999999999999999998864  47899999999998876 999999999     99875

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=100.00  E-value=6.3e-44  Score=337.37  Aligned_cols=198  Identities=31%  Similarity=0.500  Sum_probs=164.2

Q ss_pred             EEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH----HHhhcc
Q 048556          263 LKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL----KWIRGK  338 (478)
Q Consensus       263 ~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~----~~~r~~  338 (478)
                      ++|+++.|++   +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++.    ...++.
T Consensus         1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~   77 (206)
T TIGR03608         1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK   77 (206)
T ss_pred             CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence            4789999963   479999999999999999999999999999999999999999999999999764432    245778


Q ss_pred             eEEEecCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556          339 IGLVSQEPVLFT-SSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL  415 (478)
Q Consensus       339 i~~v~Q~~~lf~-~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall  415 (478)
                      ++|++|++.+|+ .|++||+.++...  ...++..     ..+.++++.+  |++........+|||||+||++|||||+
T Consensus        78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~lS~G~~qr~~laral~  150 (206)
T TIGR03608        78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKR-----EKKKEALEKV--GLNLKLKQKIYELSGGEQQRVALARAIL  150 (206)
T ss_pred             eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CchhhhcCChhhCCHHHHHHHHHHHHHH
Confidence            999999999997 5999999875321  1111111     1123344444  5555556677899999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEE
Q 048556          416 KDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIAVI  470 (478)
Q Consensus       416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl  470 (478)
                      .+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++..+.||++++|
T Consensus       151 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l  206 (206)
T TIGR03608       151 KDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL  206 (206)
T ss_pred             cCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence            9999999999999999999999999998875 468999999999988889999875

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-43  Score=361.45  Aligned_cols=200  Identities=31%  Similarity=0.527  Sum_probs=169.6

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCC----CHHHhh
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEF----QLKWIR  336 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~----~~~~~r  336 (478)
                      +++ |++++|++   . .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...    +....+
T Consensus         2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   75 (352)
T PRK11144          2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK   75 (352)
T ss_pred             eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence            566 89999963   2 23 89999999999999999999999999999999999999999999998653    233457


Q ss_pred             cceEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556          337 GKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL  415 (478)
Q Consensus       337 ~~i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall  415 (478)
                      +.++|++|++.+|+. |++||+.++......+++.+         +++.+  |++........+||||||||++|||||+
T Consensus        76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~---------~l~~~--gl~~~~~~~~~~LSgGq~qRvalaraL~  144 (352)
T PRK11144         76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDK---------IVALL--GIEPLLDRYPGSLSGGEKQRVAIGRALL  144 (352)
T ss_pred             CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHH---------HHHHc--CCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence            889999999999975 99999998754322333333         33433  5555566677899999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          416 KDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      .+|+++||||||++||+.+++.+.+.|+++.+  ++|+|+|||+++.+.. ||++++|++|++++
T Consensus       145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~  209 (352)
T PRK11144        145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKA  209 (352)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEE
Confidence            99999999999999999999999999988753  6899999999998766 99999999999875

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=100.00  E-value=2.6e-43  Score=346.42  Aligned_cols=211  Identities=24%  Similarity=0.412  Sum_probs=170.4

Q ss_pred             cEEEEeEEEECCCC------CCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHH
Q 048556          260 DIELKDIYFSYPSR------PGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLK  333 (478)
Q Consensus       260 ~i~~~~v~~~y~~~------~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~  333 (478)
                      -|+++||+++|++.      ...++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.+
T Consensus         4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~   83 (267)
T PRK15112          4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS   83 (267)
T ss_pred             eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence            38999999999531      124799999999999999999999999999999999999999999999999998765555


Q ss_pred             HhhcceEEEecCCC--CCcc-cHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHH
Q 048556          334 WIRGKIGLVSQEPV--LFTS-SIKDNINYGK---DGASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQKQ  406 (478)
Q Consensus       334 ~~r~~i~~v~Q~~~--lf~~-ti~eNl~~~~---~~~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~Q  406 (478)
                      ..++.++|+||++.  +++. |+.+|+.+..   .....++..+     .+.+.++.+  |++ ........+|||||+|
T Consensus        84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~G~~q  156 (267)
T PRK15112         84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREK-----QIIETLRQV--GLLPDHASYYPHMLAPGQKQ  156 (267)
T ss_pred             hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHH-----HHHHHHHHc--CCChHHHhcCchhcCHHHHH
Confidence            56678999999985  4554 8999987532   1111111111     112333333  332 2233456789999999


Q ss_pred             HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          407 RIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       407 rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |++||||++.+|+++||||||++||+.+.+.+.+.|+++.+  ++|+|++||+++.+.. ||++++|++|++++
T Consensus       157 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~  230 (267)
T PRK15112        157 RLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVE  230 (267)
T ss_pred             HHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEe
Confidence            99999999999999999999999999999999999998753  6899999999999887 99999999999875

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=100.00  E-value=1.4e-43  Score=341.89  Aligned_cols=204  Identities=31%  Similarity=0.550  Sum_probs=171.0

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      |+++|++++|++    ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.  .++.++
T Consensus         1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~   74 (235)
T cd03299           1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS   74 (235)
T ss_pred             CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence            468999999962    38999999999999999999999999999999999999999999999999877654  367899


Q ss_pred             EEecCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556          341 LVSQEPVLFT-SSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD  417 (478)
Q Consensus       341 ~v~Q~~~lf~-~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~  417 (478)
                      |+||++.+|+ .|++||+.++...  .+..+..+     .+.+.++.+  |+...+.....+|||||+||++||||++++
T Consensus        75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~~~  147 (235)
T cd03299          75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIER-----KVLEIAEML--GIDHLLNRKPETLSGGEQQRVAIARALVVN  147 (235)
T ss_pred             EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhHHhcCcccCCHHHHHHHHHHHHHHcC
Confidence            9999999996 5999999875322  11111111     112233333  444445566789999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          418 PRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       418 ~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |++++|||||++||+.+.+.+.+.|+++.+  ++|+|++||++..+.. ||++++|++|++++
T Consensus       148 p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~  210 (235)
T cd03299         148 PKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQ  210 (235)
T ss_pred             CCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999998753  7899999999998876 99999999999975

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.7e-43  Score=346.57  Aligned_cols=208  Identities=32%  Similarity=0.386  Sum_probs=175.7

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----CccEEEECCeecCCC--CH
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGVNLKEF--QL  332 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~~~~~--~~  332 (478)
                      .+.++++++.|.+   .++++|+||++++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++...  +.
T Consensus         8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~   84 (261)
T PRK14263          8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP   84 (261)
T ss_pred             eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence            4889999999953   4799999999999999999999999999999999999986     799999999998643  34


Q ss_pred             HHhhcceEEEecCCCCCcccHHHHHhcCCCCC-----CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 048556          333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKDGA-----SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQR  407 (478)
Q Consensus       333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~-----~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qr  407 (478)
                      ..+++.++|+||++.+|..|++||+.++....     ..+++.++++..++.+.+       ....++...+|||||+||
T Consensus        85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G~~qr  157 (261)
T PRK14263         85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEV-------KDKLKVSGLSLSGGQQQR  157 (261)
T ss_pred             HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhh-------hhhhhCCcccCCHHHHHH
Confidence            46788899999999999889999998764211     123444455554443322       223456778999999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEe--------CCEEee
Q 048556          408 IAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIH--------QGKLVE  477 (478)
Q Consensus       408 l~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~--------~G~i~~  477 (478)
                      ++||||++++|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|+        +|++++
T Consensus       158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~  236 (261)
T PRK14263        158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVE  236 (261)
T ss_pred             HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEE
Confidence            99999999999999999999999999999999999988767899999999998765 99999996        899876

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-43  Score=353.68  Aligned_cols=209  Identities=31%  Similarity=0.534  Sum_probs=175.5

Q ss_pred             ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC-----CCccEEEECCeecCCC--C
Q 048556          259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGVNLKEF--Q  331 (478)
Q Consensus       259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~~--~  331 (478)
                      ..|+++|+++.|++   +++|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|.++...  +
T Consensus        44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~  120 (305)
T PRK14264         44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN  120 (305)
T ss_pred             ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence            35899999999963   479999999999999999999999999999999999986     6899999999998643  3


Q ss_pred             HHHhhcceEEEecCCCCCcccHHHHHhcCCCCC--------------C-----HHHHHHHHHHhcHHHHHHhCCCCcccc
Q 048556          332 LKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGA--------------S-----IAEIMAAAELANAAKFIDSLPQGLDTM  392 (478)
Q Consensus       332 ~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~--------------~-----~~~~~~a~~~~~~~~~i~~lp~g~~t~  392 (478)
                      ...+|+.++|+||++.+|++|++||+.++....              .     .+++.++++..       .++.++.+.
T Consensus       121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~  193 (305)
T PRK14264        121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQA-------ALWDEVNDR  193 (305)
T ss_pred             HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHc-------CCchhhhHH
Confidence            556788999999999999999999999763210              0     11122222222       223344566


Q ss_pred             ccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEE-EEE
Q 048556          393 VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLI-AVI  470 (478)
Q Consensus       393 ~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i-~vl  470 (478)
                      +...+.+|||||+||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++ ++|
T Consensus       194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l  273 (305)
T PRK14264        194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL  273 (305)
T ss_pred             hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence            67888999999999999999999999999999999999999999999999998767899999999999766 9997 567


Q ss_pred             eCCEEee
Q 048556          471 HQGKLVE  477 (478)
Q Consensus       471 ~~G~i~~  477 (478)
                      ++|++++
T Consensus       274 ~~G~i~~  280 (305)
T PRK14264        274 TGGELVE  280 (305)
T ss_pred             cCCEEEE
Confidence            9999975

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.6e-43  Score=361.28  Aligned_cols=195  Identities=28%  Similarity=0.438  Sum_probs=163.0

Q ss_pred             CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCe----ecCCCCHHHh---h-cceEEEecCCC
Q 048556          276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGV----NLKEFQLKWI---R-GKIGLVSQEPV  347 (478)
Q Consensus       276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~----~~~~~~~~~~---r-~~i~~v~Q~~~  347 (478)
                      ..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.    ++...+.+.+   | +.++||+|++.
T Consensus        37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~  116 (382)
T TIGR03415        37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA  116 (382)
T ss_pred             EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence            46899999999999999999999999999999999999999999999996    5666665544   3 57999999999


Q ss_pred             CCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEe
Q 048556          348 LFT-SSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLD  424 (478)
Q Consensus       348 lf~-~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililD  424 (478)
                      +|+ .|++||+.++...  .+.++..     ..+.++++.+  |++........+|||||+||++|||||+.+|++||||
T Consensus       117 l~p~~Tv~eNi~~~~~~~g~~~~~~~-----~~a~e~le~v--gL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlD  189 (382)
T TIGR03415       117 LMPWLTVEENVAFGLEMQGMPEAERR-----KRVDEQLELV--GLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMD  189 (382)
T ss_pred             CCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence            998 5999999986421  1222211     1123334443  5555556667889999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          425 EATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       425 Epts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||||+||+.+++.+.+.|.++.+  ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus       190 EPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~  245 (382)
T TIGR03415       190 EPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQ  245 (382)
T ss_pred             CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            99999999999999999988753  6899999999998754 99999999999976

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.9e-43  Score=357.10  Aligned_cols=210  Identities=22%  Similarity=0.368  Sum_probs=171.1

Q ss_pred             EEEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC----CCccEEEECCeecCCCCHHHh
Q 048556          261 IELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD----PQAGEVLIDGVNLKEFQLKWI  335 (478)
Q Consensus       261 i~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~----~~~G~i~~~g~~~~~~~~~~~  335 (478)
                      ++++|++++|+.+. ...+++|+||+|++||+++|+|+||||||||+++|+|+.+    |++|+|.++|+++.+++.+++
T Consensus         4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~   83 (330)
T PRK15093          4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER   83 (330)
T ss_pred             EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence            78999999996321 2469999999999999999999999999999999999986    589999999999988876654


Q ss_pred             h----cceEEEecCCC--CCc-ccHHHHHhcCCC---CC-----CHHHHHHHHHHhcHHHHHHhCCCCcc---ccccCCC
Q 048556          336 R----GKIGLVSQEPV--LFT-SSIKDNINYGKD---GA-----SIAEIMAAAELANAAKFIDSLPQGLD---TMVGEHG  397 (478)
Q Consensus       336 r----~~i~~v~Q~~~--lf~-~ti~eNl~~~~~---~~-----~~~~~~~a~~~~~~~~~i~~lp~g~~---t~~~~~g  397 (478)
                      +    +.|+||||++.  +++ .|+.+|+.....   ..     ..++.     ...+.+.++.+  |++   .......
T Consensus        84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~L~~~--gL~~~~~~~~~~p  156 (330)
T PRK15093         84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWR-----KRRAIELLHRV--GIKDHKDAMRSFP  156 (330)
T ss_pred             HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHH-----HHHHHHHHHHC--CCCChHHHHhCCc
Confidence            3    47999999986  344 389999864210   00     10111     11123444444  443   2345677


Q ss_pred             CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCE
Q 048556          398 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGK  474 (478)
Q Consensus       398 ~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~  474 (478)
                      .+|||||+||++|||||+.+|+++|+||||++||+.++..+.+.|+++.+  +.|+|+|||+++.+.. ||+|++|++|+
T Consensus       157 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~  236 (330)
T PRK15093        157 YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQ  236 (330)
T ss_pred             hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence            89999999999999999999999999999999999999999999998764  6899999999999976 99999999999


Q ss_pred             Eee
Q 048556          475 LVE  477 (478)
Q Consensus       475 i~~  477 (478)
                      |+|
T Consensus       237 ive  239 (330)
T PRK15093        237 TVE  239 (330)
T ss_pred             EEE
Confidence            987

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=1.5e-43  Score=328.63  Aligned_cols=172  Identities=23%  Similarity=0.447  Sum_probs=156.9

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH-HHhhcc
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL-KWIRGK  338 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~  338 (478)
                      -++++|++++|       +++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. +..++.
T Consensus         4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   76 (182)
T cd03215           4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG   76 (182)
T ss_pred             EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence            38999999987       7999999999999999999999999999999999999999999999999988763 456788


Q ss_pred             eEEEecCC---CCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 048556          339 IGLVSQEP---VLFT-SSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI  414 (478)
Q Consensus       339 i~~v~Q~~---~lf~-~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal  414 (478)
                      ++|++|++   .++. .|++||+.++..                                     ||||||||++||||+
T Consensus        77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~-------------------------------------LS~G~~qrl~la~al  119 (182)
T cd03215          77 IAYVPEDRKREGLVLDLSVAENIALSSL-------------------------------------LSGGNQQKVVLARWL  119 (182)
T ss_pred             eEEecCCcccCcccCCCcHHHHHHHHhh-------------------------------------cCHHHHHHHHHHHHH
Confidence            99999995   3554 699999987421                                     999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 048556          415 LKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKL  475 (478)
Q Consensus       415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i  475 (478)
                      +.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++
T Consensus       120 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i  182 (182)
T cd03215         120 ARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI  182 (182)
T ss_pred             ccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence            99999999999999999999999999999875 46899999999998877 999999999975

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=100.00  E-value=2e-43  Score=338.16  Aligned_cols=199  Identities=29%  Similarity=0.473  Sum_probs=168.7

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++|++++|++   +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++....    ++.++
T Consensus         1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~   73 (223)
T TIGR03740         1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG   73 (223)
T ss_pred             CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence            478999999963   47999999999999999999999999999999999999999999999999875422    35799


Q ss_pred             EEecCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556          341 LVSQEPVLFT-SSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD  417 (478)
Q Consensus       341 ~v~Q~~~lf~-~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~  417 (478)
                      |+||++.+|. .|++||+.++..  ...++++.+.++..           |++........+|||||+||++||||++.+
T Consensus        74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~~rv~laral~~~  142 (223)
T TIGR03740        74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIV-----------DLTNTGKKKAKQFSLGMKQRLGIAIALLNH  142 (223)
T ss_pred             EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHc-----------CCcHHHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence            9999999887 499999986431  12233444444333           444444556688999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          418 PRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       418 ~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus       143 p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~  204 (223)
T TIGR03740       143 PKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGY  204 (223)
T ss_pred             CCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEE
Confidence            99999999999999999999999999875 46899999999998865 99999999999875

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=100.00  E-value=2.3e-43  Score=346.91  Aligned_cols=213  Identities=31%  Similarity=0.478  Sum_probs=176.2

Q ss_pred             EEEEeEEEECCCC------CCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH--
Q 048556          261 IELKDIYFSYPSR------PGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL--  332 (478)
Q Consensus       261 i~~~~v~~~y~~~------~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~--  332 (478)
                      |+++||+|.|++.      .++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.  
T Consensus         4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~   83 (268)
T PRK10419          4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ   83 (268)
T ss_pred             EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence            7899999999631      02579999999999999999999999999999999999999999999999999887664  


Q ss_pred             -HHhhcceEEEecCCC--CCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-cccCCCCCCChHHHHH
Q 048556          333 -KWIRGKIGLVSQEPV--LFT-SSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDT-MVGEHGTQLSGGQKQR  407 (478)
Q Consensus       333 -~~~r~~i~~v~Q~~~--lf~-~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t-~~~~~g~~LSgGq~Qr  407 (478)
                       ..+++.++|++|++.  ++. .|+++|+.+......  ..........+.+.+..+  |+++ .....+..|||||+||
T Consensus        84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~Ge~qr  159 (268)
T PRK10419         84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--SLDKAERLARASEMLRAV--DLDDSVLDKRPPQLSGGQLQR  159 (268)
T ss_pred             HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHc--CCChhHhhCCCccCChHHHHH
Confidence             346788999999983  444 599999865321000  000111222345566665  7764 5677889999999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          408 IAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       408 l~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ++|||||+.+|+++||||||++||+.+++.+.+.|+++.+  ++|+|++||+++.+.. ||++++|++|++++
T Consensus       160 l~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~  232 (268)
T PRK10419        160 VCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE  232 (268)
T ss_pred             HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEee
Confidence            9999999999999999999999999999999999988753  6899999999999875 99999999999875

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=100.00  E-value=2.6e-43  Score=322.17  Aligned_cols=164  Identities=29%  Similarity=0.476  Sum_probs=151.1

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      |+++|++++|+++  +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.           +.++
T Consensus         1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~   67 (166)
T cd03223           1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLL   67 (166)
T ss_pred             CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEE
Confidence            4789999999632  47999999999999999999999999999999999999999999999873           6799


Q ss_pred             EEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCE
Q 048556          341 LVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI  420 (478)
Q Consensus       341 ~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~i  420 (478)
                      |++|++.+++.|++||+.++                                   ....||||||||++||||++++|++
T Consensus        68 ~~~q~~~~~~~tv~~nl~~~-----------------------------------~~~~LS~G~~~rv~laral~~~p~~  112 (166)
T cd03223          68 FLPQRPYLPLGTLREQLIYP-----------------------------------WDDVLSGGEQQRLAFARLLLHKPKF  112 (166)
T ss_pred             EECCCCccccccHHHHhhcc-----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCE
Confidence            99999999888999999864                                   2478999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCE
Q 048556          421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGK  474 (478)
Q Consensus       421 lilDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~  474 (478)
                      +||||||++||+.+++.+.+.+++.  ++|+|++||+++....||++++|++|.
T Consensus       113 lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~  164 (166)
T cd03223         113 VFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG  164 (166)
T ss_pred             EEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence            9999999999999999999999886  589999999999887899999998864

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.4e-43  Score=359.58  Aligned_cols=201  Identities=32%  Similarity=0.530  Sum_probs=170.7

Q ss_pred             eEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC----HHHhhcceE
Q 048556          265 DIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ----LKWIRGKIG  340 (478)
Q Consensus       265 ~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~----~~~~r~~i~  340 (478)
                      |++++|++   .. + |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+    ....++.++
T Consensus         4 ~l~~~~~~---~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~   78 (354)
T TIGR02142         4 RFSKRLGD---FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG   78 (354)
T ss_pred             EEEEEECC---EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence            89999963   23 4 999999999999999999999999999999999999999999999986532    234578899


Q ss_pred             EEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCC
Q 048556          341 LVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR  419 (478)
Q Consensus       341 ~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~  419 (478)
                      |+||++.+|+. |++||+.++.......+.     ...+.++++.+  |++........+||||||||++|||||+.+|+
T Consensus        79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~-----~~~~~~~l~~~--gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~  151 (354)
T TIGR02142        79 YVFQEARLFPHLSVRGNLRYGMKRARPSER-----RISFERVIELL--GIGHLLGRLPGRLSGGEKQRVAIGRALLSSPR  151 (354)
T ss_pred             EEecCCccCCCCcHHHHHHHHhhccChhHH-----HHHHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence            99999999986 999999987533222221     11234455555  67777778889999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          420 ILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       420 ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ++||||||++||+.+++.+.+.|+++.+  ++|+|++||+++.+.. ||++++|++|++++
T Consensus       152 lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~  212 (354)
T TIGR02142       152 LLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAA  212 (354)
T ss_pred             EEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEE
Confidence            9999999999999999999999998753  6899999999998866 99999999999875

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=100.00  E-value=2.3e-43  Score=330.59  Aligned_cols=181  Identities=29%  Similarity=0.500  Sum_probs=160.6

Q ss_pred             cEEEEeEEEECCCC---CCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccC--CCCccEEEECCeecCCCCHHH
Q 048556          260 DIELKDIYFSYPSR---PGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFY--DPQAGEVLIDGVNLKEFQLKW  334 (478)
Q Consensus       260 ~i~~~~v~~~y~~~---~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~--~~~~G~i~~~g~~~~~~~~~~  334 (478)
                      .++++|++|+|++.   .++++++|+||++++||+++|+||||||||||+++|+|++  +|++|+|.+||+++..   ..
T Consensus         3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~   79 (194)
T cd03213           3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS   79 (194)
T ss_pred             EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence            48999999999741   0257999999999999999999999999999999999999  9999999999998864   25


Q ss_pred             hhcceEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556          335 IRGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA  413 (478)
Q Consensus       335 ~r~~i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa  413 (478)
                      +++.++|+||++.+|.+ |++||+.++..          +                .        .|||||+||++||||
T Consensus        80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~----------~----------------~--------~LS~G~~qrv~lara  125 (194)
T cd03213          80 FRKIIGYVPQDDILHPTLTVRETLMFAAK----------L----------------R--------GLSGGERKRVSIALE  125 (194)
T ss_pred             hhheEEEccCcccCCCCCcHHHHHHHHHH----------h----------------c--------cCCHHHHHHHHHHHH
Confidence            67889999999999875 99999965310          0                0        899999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCch-hhh-hcCEEEEEeCCEEee
Q 048556          414 ILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLS-TVR-NADLIAVIHQGKLVE  477 (478)
Q Consensus       414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~-~~~-~~d~i~vl~~G~i~~  477 (478)
                      ++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++ .+. .||++++|++|++++
T Consensus       126 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~  192 (194)
T cd03213         126 LVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIY  192 (194)
T ss_pred             HHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEe
Confidence            999999999999999999999999999998875 4789999999996 454 499999999999875

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=2.9e-43  Score=329.45  Aligned_cols=180  Identities=27%  Similarity=0.442  Sum_probs=159.3

Q ss_pred             cEEEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccC--CCCccEEEECCeecCCCCHHHhh
Q 048556          260 DIELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFY--DPQAGEVLIDGVNLKEFQLKWIR  336 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~--~~~~G~i~~~g~~~~~~~~~~~r  336 (478)
                      .++++|++|.|++.. ++++++|+||++++||+++|+||||||||||+++|+|++  +|++|+|.+||.++.    ..++
T Consensus         3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~   78 (192)
T cd03232           3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ   78 (192)
T ss_pred             EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence            489999999997421 247999999999999999999999999999999999986  489999999999875    4567


Q ss_pred             cceEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556          337 GKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL  415 (478)
Q Consensus       337 ~~i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall  415 (478)
                      +.++|++|++.+|.+ |++||+.++..          ++                        +|||||+||++||||++
T Consensus        79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~----------~~------------------------~LSgGe~qrv~la~al~  124 (192)
T cd03232          79 RSTGYVEQQDVHSPNLTVREALRFSAL----------LR------------------------GLSVEQRKRLTIGVELA  124 (192)
T ss_pred             hceEEecccCccccCCcHHHHHHHHHH----------Hh------------------------cCCHHHhHHHHHHHHHh
Confidence            889999999998886 99999985310          00                        89999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchh--hhhcCEEEEEeC-CEEee
Q 048556          416 KDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLST--VRNADLIAVIHQ-GKLVE  477 (478)
Q Consensus       416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~i~vl~~-G~i~~  477 (478)
                      .+|+++||||||++||+.+.+.+++.|+++. +++|+|++||+++.  .+.||++++|++ |++++
T Consensus       125 ~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~  190 (192)
T cd03232         125 AKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVY  190 (192)
T ss_pred             cCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEe
Confidence            9999999999999999999999999999875 46899999999983  456999999999 99986

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.6e-43  Score=342.08  Aligned_cols=208  Identities=30%  Similarity=0.516  Sum_probs=173.2

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECC------eecCCCCHH
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG------VNLKEFQLK  333 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g------~~~~~~~~~  333 (478)
                      .++++|++++|++   +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|      .++.+.+..
T Consensus        10 ~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~   86 (257)
T PRK14246         10 VFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI   86 (257)
T ss_pred             heeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence            5899999999963   4799999999999999999999999999999999999999997666655      666666777


Q ss_pred             HhhcceEEEecCCCCCcc-cHHHHHhcCCCC--C-CHHHHHHHHHHhcHHHHHHhCCCCcc----ccccCCCCCCChHHH
Q 048556          334 WIRGKIGLVSQEPVLFTS-SIKDNINYGKDG--A-SIAEIMAAAELANAAKFIDSLPQGLD----TMVGEHGTQLSGGQK  405 (478)
Q Consensus       334 ~~r~~i~~v~Q~~~lf~~-ti~eNl~~~~~~--~-~~~~~~~a~~~~~~~~~i~~lp~g~~----t~~~~~g~~LSgGq~  405 (478)
                      ++|+.++|+||++.+|.+ |++||+.++...  . ..++..+.     +.+.++.+  |++    ......+..||||||
T Consensus        87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~-----~~~~~~~~--~l~~~~~~~~~~~~~~LS~G~~  159 (257)
T PRK14246         87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKI-----VEECLRKV--GLWKEVYDRLNSPASQLSGGQQ  159 (257)
T ss_pred             HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHH-----HHHHHHHc--CCCccchhhhcCCcccCCHHHH
Confidence            788999999999999986 999999976321  1 22222111     12223322  332    344567889999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh-hcCEEEEEeCCEEee
Q 048556          406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVR-NADLIAVIHQGKLVE  477 (478)
Q Consensus       406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~  477 (478)
                      ||++||||++.+|+++||||||++||+.+++.+.+.|.++.+++|+|++||+++.+. .||++++|++|++++
T Consensus       160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~  232 (257)
T PRK14246        160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVE  232 (257)
T ss_pred             HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999999999999999998876799999999999985 499999999999875

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=100.00  E-value=6.5e-43  Score=329.15  Aligned_cols=178  Identities=30%  Similarity=0.487  Sum_probs=159.0

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhcc--CCCCccEEEECCeecCCCCHHHh-hc
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGVNLKEFQLKWI-RG  337 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~--~~~~~G~i~~~g~~~~~~~~~~~-r~  337 (478)
                      ++++|++++|++   +++++|+||++++||+++|+||||||||||+++|+|+  ++|++|+|.+||.++.+.+.... ++
T Consensus         1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~   77 (200)
T cd03217           1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL   77 (200)
T ss_pred             CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence            478999999963   4799999999999999999999999999999999999  58999999999999988876554 45


Q ss_pred             ceEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556          338 KIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK  416 (478)
Q Consensus       338 ~i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~  416 (478)
                      .++|+||++.+|++ |+++|+                         ..           ....|||||+||++||||+++
T Consensus        78 ~i~~v~q~~~~~~~~~~~~~l-------------------------~~-----------~~~~LS~G~~qrv~laral~~  121 (200)
T cd03217          78 GIFLAFQYPPEIPGVKNADFL-------------------------RY-----------VNEGFSGGEKKRNEILQLLLL  121 (200)
T ss_pred             cEEEeecChhhccCccHHHHH-------------------------hh-----------ccccCCHHHHHHHHHHHHHhc
Confidence            69999999999886 666665                         00           124799999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchhhh--hcCEEEEEeCCEEee
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIMI-NRTTVIVAHRLSTVR--NADLIAVIHQGKLVE  477 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~--~~d~i~vl~~G~i~~  477 (478)
                      +|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.  .||++++|++|++++
T Consensus       122 ~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~  185 (200)
T cd03217         122 EPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVK  185 (200)
T ss_pred             CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEE
Confidence            9999999999999999999999999998754 689999999999988  599999999999875

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=100.00  E-value=8.9e-43  Score=328.51  Aligned_cols=195  Identities=24%  Similarity=0.355  Sum_probs=165.8

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++|+++.|++   +++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++
T Consensus         1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~   76 (201)
T cd03231           1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL   76 (201)
T ss_pred             CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence            478999999963   46999999999999999999999999999999999999999999999999986543 46788999


Q ss_pred             EEecCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCC
Q 048556          341 LVSQEPVLFT-SSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR  419 (478)
Q Consensus       341 ~v~Q~~~lf~-~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~  419 (478)
                      |+||++.++. .|++||+.+..+...++++.++++..++.++           ......+|||||+||++||||++++|+
T Consensus        77 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~laral~~~p~  145 (201)
T cd03231          77 YLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGF-----------EDRPVAQLSAGQQRRVALARLLLSGRP  145 (201)
T ss_pred             EeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhh-----------hcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence            9999998875 6999999886544444555555555554432           234467899999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhh-hhcCEEEEE
Q 048556          420 ILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTV-RNADLIAVI  470 (478)
Q Consensus       420 ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~-~~~d~i~vl  470 (478)
                      ++||||||++||+.+++.+.+.|++.. +++|+|++||+...+ ..+++++++
T Consensus       146 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~  198 (201)
T cd03231         146 LWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL  198 (201)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence            999999999999999999999998765 478999999987755 458999877

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=100.00  E-value=3.6e-43  Score=325.47  Aligned_cols=175  Identities=34%  Similarity=0.585  Sum_probs=156.4

Q ss_pred             EEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEE
Q 048556          262 ELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGL  341 (478)
Q Consensus       262 ~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~  341 (478)
                      +++|++|+|++   +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++|
T Consensus         1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~   77 (180)
T cd03214           1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAY   77 (180)
T ss_pred             CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhH
Confidence            47899999963   469999999999999999999999999999999999999999999999999988888888888999


Q ss_pred             EecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEE
Q 048556          342 VSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRIL  421 (478)
Q Consensus       342 v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~il  421 (478)
                      ++|                           +++..++.++           +...+..|||||+||++||||++++|+++
T Consensus        78 ~~q---------------------------~l~~~gl~~~-----------~~~~~~~LS~G~~qrl~laral~~~p~ll  119 (180)
T cd03214          78 VPQ---------------------------ALELLGLAHL-----------ADRPFNELSGGERQRVLLARALAQEPPIL  119 (180)
T ss_pred             HHH---------------------------HHHHcCCHhH-----------hcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            999                           3444444433           33456889999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          422 LLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       422 ilDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||||||++||+.+.+.+.+.|+++.+  ++|+|++||+++.+.. ||++++|++|++++
T Consensus       120 llDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~  178 (180)
T cd03214         120 LLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVA  178 (180)
T ss_pred             EEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence            99999999999999999999988754  6899999999999854 99999999999875

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=100.00  E-value=1.2e-42  Score=338.91  Aligned_cols=211  Identities=25%  Similarity=0.434  Sum_probs=171.6

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhcc--CCCCccEEEECCeecCCCCHHHhhc
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGVNLKEFQLKWIRG  337 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~--~~~~~G~i~~~g~~~~~~~~~~~r~  337 (478)
                      -++++|+++.|++   +++|+|+||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|.++.+.+....++
T Consensus         7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~   83 (252)
T CHL00131          7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH   83 (252)
T ss_pred             eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence            4899999999963   4699999999999999999999999999999999998  6899999999999998887666554


Q ss_pred             -ceEEEecCCCCCcc-cHHHHHhcCCCCC------CHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCC-CCChHHHHH
Q 048556          338 -KIGLVSQEPVLFTS-SIKDNINYGKDGA------SIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGT-QLSGGQKQR  407 (478)
Q Consensus       338 -~i~~v~Q~~~lf~~-ti~eNl~~~~~~~------~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~-~LSgGq~Qr  407 (478)
                       .++|++|++.+|++ |+.+|+.++....      .+.+..+.  ...+.+.+..+  |+. +.+..... .|||||+||
T Consensus        84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~--~l~~~~~~~~~~~~LSgG~~qr  159 (252)
T CHL00131         84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEF--LEIINEKLKLV--GMDPSFLSRNVNEGFSGGEKKR  159 (252)
T ss_pred             eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHH--HHHHHHHHHHc--CCchhhhccccccCCCHHHHHH
Confidence             48999999999987 8999987642100      00000000  01123334433  443 34455555 599999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh--cCEEEEEeCCEEee
Q 048556          408 IAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN--ADLIAVIHQGKLVE  477 (478)
Q Consensus       408 l~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~--~d~i~vl~~G~i~~  477 (478)
                      ++||||++++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..  ||++++|++|++++
T Consensus       160 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~  232 (252)
T CHL00131        160 NEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIK  232 (252)
T ss_pred             HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEE
Confidence            999999999999999999999999999999999998875 47899999999998875  89999999999875

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=100.00  E-value=9.9e-43  Score=339.69  Aligned_cols=208  Identities=27%  Similarity=0.406  Sum_probs=173.0

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCee-----cCCCCHHH
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVN-----LKEFQLKW  334 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~-----~~~~~~~~  334 (478)
                      -++++|++++|++   .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+     +...+..+
T Consensus         3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   79 (253)
T TIGR02323         3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE   79 (253)
T ss_pred             eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence            4899999999963   368999999999999999999999999999999999999999999999987     66666543


Q ss_pred             h----hcceEEEecCCC--CCc-ccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChH
Q 048556          335 I----RGKIGLVSQEPV--LFT-SSIKDNINYGK---DGASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGG  403 (478)
Q Consensus       335 ~----r~~i~~v~Q~~~--lf~-~ti~eNl~~~~---~~~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgG  403 (478)
                      .    ++.++|++|++.  ++. .|+.+|+.+..   ......+.     ...+.++++.+  |++ +........||||
T Consensus        80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~LSgG  152 (253)
T TIGR02323        80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEV--EIDPTRIDDLPRAFSGG  152 (253)
T ss_pred             HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHc--CCChhhhhcCchhcCHH
Confidence            2    467999999985  333 48888885421   00111111     12345677777  564 5778889999999


Q ss_pred             HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          404 QKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       404 q~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |+||++|||||+.+|+++||||||++||+.+++.+.+.|++..+  +.|+|++||+++.+.. ||++++|++|++++
T Consensus       153 ~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~  229 (253)
T TIGR02323       153 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVE  229 (253)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999988642  6899999999999875 99999999999975

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=1.7e-42  Score=315.86  Aligned_cols=159  Identities=33%  Similarity=0.578  Sum_probs=148.0

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH-HHhhcce
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL-KWIRGKI  339 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~i  339 (478)
                      ++++|++++|++   .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. +..++.+
T Consensus         1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i   77 (163)
T cd03216           1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGI   77 (163)
T ss_pred             CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCe
Confidence            478999999963   479999999999999999999999999999999999999999999999999988775 4467789


Q ss_pred             EEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCC
Q 048556          340 GLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR  419 (478)
Q Consensus       340 ~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~  419 (478)
                      +|++|                                                       |||||+||++||||++++|+
T Consensus        78 ~~~~q-------------------------------------------------------LS~G~~qrl~laral~~~p~  102 (163)
T cd03216          78 AMVYQ-------------------------------------------------------LSVGERQMVEIARALARNAR  102 (163)
T ss_pred             EEEEe-------------------------------------------------------cCHHHHHHHHHHHHHhcCCC
Confidence            99999                                                       99999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          420 ILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       420 ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ++||||||++||+.+++.+.+.|+++. ++.|+|++||+++.+.. ||++++|++|++++
T Consensus       103 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~  162 (163)
T cd03216         103 LLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG  162 (163)
T ss_pred             EEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence            999999999999999999999998875 47899999999998765 99999999999986

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=4.7e-43  Score=308.47  Aligned_cols=213  Identities=29%  Similarity=0.409  Sum_probs=180.5

Q ss_pred             cEEEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh---
Q 048556          260 DIELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI---  335 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~---  335 (478)
                      -|++++++++.+... ..++|++++|.|++||.+|||||||||||||+-+++|+.+|++|+|.+.|+++.+++.+..   
T Consensus         6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~   85 (228)
T COG4181           6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL   85 (228)
T ss_pred             eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence            478888888876432 2368999999999999999999999999999999999999999999999999999886543   


Q ss_pred             -hcceEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556          336 -RGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA  413 (478)
Q Consensus       336 -r~~i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa  413 (478)
                       .+++++|+|..+|.+. |..||+.+...-..+..   +-......+++...  |+...+...+.+|||||+||+|||||
T Consensus        86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~---~~~~~~A~~lL~~v--GLg~Rl~HyP~qLSGGEQQRVAiARA  160 (228)
T COG4181          86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESS---ADSRAGAKALLEAV--GLGKRLTHYPAQLSGGEQQRVALARA  160 (228)
T ss_pred             hccceeEEEEeeeccccchhhhhccchhhhcCCcc---ccHHHHHHHHHHHh--CcccccccCccccCchHHHHHHHHHH
Confidence             4679999999999876 99999987643222100   00111223455554  78888888899999999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          414 ILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      +...|++|+-||||-+||.+|.++|.+.+..+.  .+.|.++|||++.....|||++-|.+|++++
T Consensus       161 fa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~  226 (228)
T COG4181         161 FAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE  226 (228)
T ss_pred             hcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence            999999999999999999999999999997765  3679999999999999999999999999986

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=100.00  E-value=1.2e-42  Score=339.29  Aligned_cols=201  Identities=31%  Similarity=0.456  Sum_probs=166.1

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC----CccEEEECCeecCCCCHHHh
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP----QAGEVLIDGVNLKEFQLKWI  335 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~----~~G~i~~~g~~~~~~~~~~~  335 (478)
                      .++++|++++| +   +++|+|+||++++||+++|+||||||||||+++|+|+++|    ++|+|.++|.++...  +..
T Consensus         4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~   77 (254)
T PRK10418          4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR   77 (254)
T ss_pred             EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence            48999999999 3   3699999999999999999999999999999999999999    999999999988632  223


Q ss_pred             hcceEEEecCCC-CCc--ccHHHHHhcC----CCCCCHHHHHHHHHHhcHHHHHHhCCCCccc---cccCCCCCCChHHH
Q 048556          336 RGKIGLVSQEPV-LFT--SSIKDNINYG----KDGASIAEIMAAAELANAAKFIDSLPQGLDT---MVGEHGTQLSGGQK  405 (478)
Q Consensus       336 r~~i~~v~Q~~~-lf~--~ti~eNl~~~----~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t---~~~~~g~~LSgGq~  405 (478)
                      ++.++|+||++. .|.  .|+.+|+.+.    .....++++.+.++         .+  |++.   .++.....|||||+
T Consensus        78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------~~--~l~~~~~~~~~~~~~LS~Gq~  146 (254)
T PRK10418         78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALE---------AV--GLENAARVLKLYPFEMSGGML  146 (254)
T ss_pred             cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHH---------Hc--CCCChhhhhhcCCcccCHHHH
Confidence            467999999985 343  4888887542    11112223333333         33  3333   46777899999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+  ++|+|++||+++.+.. ||++++|++|++++
T Consensus       147 qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~  221 (254)
T PRK10418        147 QRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVE  221 (254)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999999999999999988743  6899999999999865 99999999999875

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=100.00  E-value=7.5e-43  Score=337.12  Aligned_cols=194  Identities=26%  Similarity=0.414  Sum_probs=159.9

Q ss_pred             CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEe-cCCCCCc-ccH
Q 048556          276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVS-QEPVLFT-SSI  353 (478)
Q Consensus       276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~-Q~~~lf~-~ti  353 (478)
                      +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++.++|++ |++.+|. .|+
T Consensus        34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv  112 (236)
T cd03267          34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV  112 (236)
T ss_pred             eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence            4799999999999999999999999999999999999999999999999987553 345678899997 5677765 599


Q ss_pred             HHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCC
Q 048556          354 KDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD  431 (478)
Q Consensus       354 ~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD  431 (478)
                      +||+.+...  ..+.++..+.     +.+.++.+  |++.........|||||+||++||||++.+|+++||||||++||
T Consensus       113 ~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD  185 (236)
T cd03267         113 IDSFYLLAAIYDLPPARFKKR-----LDELSELL--DLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD  185 (236)
T ss_pred             HHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence            999976431  1223332221     12233333  45444455667899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          432 AESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       432 ~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +.+.+.+.+.|+++.+  ++|+|++||+++.+.. ||++++|++|++++
T Consensus       186 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~  234 (236)
T cd03267         186 VVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLY  234 (236)
T ss_pred             HHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence            9999999999998743  6899999999998766 99999999999875

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-42  Score=370.79  Aligned_cols=208  Identities=27%  Similarity=0.459  Sum_probs=177.5

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC--CccEEEECCeecCCCCHHH-hh
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGVNLKEFQLKW-IR  336 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~~~~~~~~~-~r  336 (478)
                      -++++|++++|++   .++|+|+||+|++||+++|+||||||||||+|+|+|+++|  ++|+|.++|.++...+... .|
T Consensus         5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~   81 (506)
T PRK13549          5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER   81 (506)
T ss_pred             eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence            3899999999963   4799999999999999999999999999999999999996  8999999999998776544 46


Q ss_pred             cceEEEecCCCCCcc-cHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 048556          337 GKIGLVSQEPVLFTS-SIKDNINYGKDG-----ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAI  410 (478)
Q Consensus       337 ~~i~~v~Q~~~lf~~-ti~eNl~~~~~~-----~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~l  410 (478)
                      +.++||||++.+|+. |++||+.++...     .+.++..     ..+.++++.+  |++........+||||||||++|
T Consensus        82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~l  154 (506)
T PRK13549         82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMY-----LRAQKLLAQL--KLDINPATPVGNLGLGQQQLVEI  154 (506)
T ss_pred             CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHH-----HHHHHHHHHc--CCCCCcccchhhCCHHHHHHHHH
Confidence            789999999998876 999999886421     1222211     1234455555  66666677788999999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          411 ARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       411 ARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||||+.+|++|||||||++||+.++..+.+.|+++. +++|+|+|||+++.+.. ||++++|++|++++
T Consensus       155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~  223 (506)
T PRK13549        155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIG  223 (506)
T ss_pred             HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEee
Confidence            999999999999999999999999999999998874 46899999999998876 99999999999874

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=1.2e-42  Score=327.39  Aligned_cols=195  Identities=22%  Similarity=0.380  Sum_probs=163.5

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++|++++|++   +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.. ....++++++
T Consensus         2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~   77 (200)
T PRK13540          2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC   77 (200)
T ss_pred             EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence            689999999963   469999999999999999999999999999999999999999999999998865 3456788999


Q ss_pred             EEecCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCC
Q 048556          341 LVSQEPVLFT-SSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR  419 (478)
Q Consensus       341 ~v~Q~~~lf~-~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~  419 (478)
                      |+||++.+++ .|++||+.++......+        .++.+.++.+  |+.........+|||||+||++||||++++|+
T Consensus        78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~--------~~~~~~l~~~--~l~~~~~~~~~~LS~G~~~rv~laral~~~p~  147 (200)
T PRK13540         78 FVGHRSGINPYLTLRENCLYDIHFSPGA--------VGITELCRLF--SLEHLIDYPCGLLSSGQKRQVALLRLWMSKAK  147 (200)
T ss_pred             EeccccccCcCCCHHHHHHHHHhcCcch--------HHHHHHHHHc--CCchhhhCChhhcCHHHHHHHHHHHHHhcCCC
Confidence            9999999875 59999998763111111        1233444444  33333445557899999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEE
Q 048556          420 ILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIAV  469 (478)
Q Consensus       420 ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~v  469 (478)
                      ++||||||++||+.+.+.+.+.|+++. +++|+|++||+.+.+.+||.-++
T Consensus       148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~  198 (200)
T PRK13540        148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY  198 (200)
T ss_pred             EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence            999999999999999999999999864 47899999999999999987543

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=100.00  E-value=1.8e-42  Score=336.79  Aligned_cols=211  Identities=25%  Similarity=0.363  Sum_probs=164.4

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccC--CCCccEEEECCeecCCCCHHHhh-c
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFY--DPQAGEVLIDGVNLKEFQLKWIR-G  337 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~--~~~~G~i~~~g~~~~~~~~~~~r-~  337 (478)
                      ++++|+++.|++   +++++|+||+|++||+++|+||||||||||+++|+|++  +|++|+|.++|.++...+....+ +
T Consensus         2 i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~   78 (248)
T PRK09580          2 LSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE   78 (248)
T ss_pred             eEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence            689999999963   46999999999999999999999999999999999994  69999999999999887766554 5


Q ss_pred             ceEEEecCCCCCcc-cHHHHHhcCCCCC---CHHHHHHHHH-HhcHHHHHHh--CCCCccccccCCC-CCCChHHHHHHH
Q 048556          338 KIGLVSQEPVLFTS-SIKDNINYGKDGA---SIAEIMAAAE-LANAAKFIDS--LPQGLDTMVGEHG-TQLSGGQKQRIA  409 (478)
Q Consensus       338 ~i~~v~Q~~~lf~~-ti~eNl~~~~~~~---~~~~~~~a~~-~~~~~~~i~~--lp~g~~t~~~~~g-~~LSgGq~Qrl~  409 (478)
                      .++|++|++.+++. |..+++.+.....   ...+..+..+ ...+.+.++.  +|+++.+   ... ..||||||||++
T Consensus        79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~~~LS~G~~qrv~  155 (248)
T PRK09580         79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLT---RSVNVGFSGGEKKRND  155 (248)
T ss_pred             ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcc---cCCCCCCCHHHHHHHH
Confidence            79999999987765 5555543221100   0000000000 1111223332  3333322   223 379999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchhhhh--cCEEEEEeCCEEee
Q 048556          410 IARAILKDPRILLLDEATSALDAESERVVQEALDKIMI-NRTTVIVAHRLSTVRN--ADLIAVIHQGKLVE  477 (478)
Q Consensus       410 lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~--~d~i~vl~~G~i~~  477 (478)
                      ||||++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..  +|+|++|++|++++
T Consensus       156 laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~  226 (248)
T PRK09580        156 ILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK  226 (248)
T ss_pred             HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEE
Confidence            99999999999999999999999999999999988754 6899999999999887  79999999999875

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-42  Score=368.96  Aligned_cols=208  Identities=25%  Similarity=0.432  Sum_probs=176.7

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH-HHhhcc
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL-KWIRGK  338 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~  338 (478)
                      -++++|+++.|++   +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. +.+|+.
T Consensus         4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~   80 (501)
T PRK11288          4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG   80 (501)
T ss_pred             eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence            3899999999963   469999999999999999999999999999999999999999999999999876543 446788


Q ss_pred             eEEEecCCCCCcc-cHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048556          339 IGLVSQEPVLFTS-SIKDNINYGKDG-----ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR  412 (478)
Q Consensus       339 i~~v~Q~~~lf~~-ti~eNl~~~~~~-----~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lAR  412 (478)
                      ++|+||++.+|+. |++||+.++...     ....+..     ..+.++++.+  |++........+||||||||++|||
T Consensus        81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lar  153 (501)
T PRK11288         81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLN-----YEAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAK  153 (501)
T ss_pred             EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHH-----HHHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHH
Confidence            9999999999886 999999986421     1112211     1234555555  5655556677899999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          413 AILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       413 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||+.+|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++
T Consensus       154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~  220 (501)
T PRK11288        154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA  220 (501)
T ss_pred             HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence            9999999999999999999999999999998875 46899999999998866 99999999999864

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=3.5e-43  Score=308.34  Aligned_cols=194  Identities=31%  Similarity=0.534  Sum_probs=168.0

Q ss_pred             CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHH
Q 048556          275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIK  354 (478)
Q Consensus       275 ~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~  354 (478)
                      +.++|+|+||++++||.++|+||||||||||+|.++-+.+|++|.+++.|++++.++++.+|++|+|+-|.|.||.+||.
T Consensus        15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe   94 (223)
T COG4619          15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE   94 (223)
T ss_pred             CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCc-cccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 048556          355 DNINYGKDGASIAEIMAAAELANAAKFIDSLPQGL-DTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE  433 (478)
Q Consensus       355 eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~-~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~  433 (478)
                      ||+.|.-.-.. .+-..+    ...+++..+  ++ ++.+..+..+||||||||+||+|-|.--|+||+||||||+||+.
T Consensus        95 DNlifP~~~r~-rr~dr~----aa~~llar~--~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~  167 (223)
T COG4619          95 DNLIFPWQIRN-RRPDRA----AALDLLARF--ALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDES  167 (223)
T ss_pred             hccccchHHhc-cCCChH----HHHHHHHHc--CCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChh
Confidence            99998631100 000011    112333333  22 56778889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhc--CCCeEEEEecCchh-hhhcCEEEEEeCCEE
Q 048556          434 SERVVQEALDKIM--INRTTVIVAHRLST-VRNADLIAVIHQGKL  475 (478)
Q Consensus       434 ~~~~i~~~l~~~~--~~~t~i~itH~~~~-~~~~d~i~vl~~G~i  475 (478)
                      +.+.|.+.|.++-  ++..+++|||+... ++++|+++.+..|++
T Consensus       168 nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~  212 (223)
T COG4619         168 NKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA  212 (223)
T ss_pred             hHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence            9999999998874  46799999999987 788999999999876

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=2.6e-42  Score=326.04  Aligned_cols=195  Identities=20%  Similarity=0.327  Sum_probs=164.8

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++|++++|++   +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++++++
T Consensus         2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~   77 (204)
T PRK13538          2 LEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLL   77 (204)
T ss_pred             eEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheE
Confidence            689999999963   46999999999999999999999999999999999999999999999999987654 45678899


Q ss_pred             EEecCCCCCcc-cHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556          341 LVSQEPVLFTS-SIKDNINYGKDG---ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK  416 (478)
Q Consensus       341 ~v~Q~~~lf~~-ti~eNl~~~~~~---~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~  416 (478)
                      |++|++.+++. |++||+.++.+.   ...+++.++++..+           ++.........||||||||++||||+++
T Consensus        78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LS~G~~qrl~la~al~~  146 (204)
T PRK13538         78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVG-----------LAGFEDVPVRQLSAGQQRRVALARLWLT  146 (204)
T ss_pred             EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcC-----------CHHHhhCChhhcCHHHHHHHHHHHHHhc
Confidence            99999988874 999999876432   12233444444444           4333445578899999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEE
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVI  470 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl  470 (478)
                      +|+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. .+|++++
T Consensus       147 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~  202 (204)
T PRK13538        147 RAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL  202 (204)
T ss_pred             CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence            999999999999999999999999998874 46899999999999866 5777776

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=3.2e-42  Score=367.60  Aligned_cols=207  Identities=27%  Similarity=0.440  Sum_probs=175.8

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHH-hhcce
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW-IRGKI  339 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~i  339 (478)
                      |+++|++++|++   +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus         5 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i   81 (501)
T PRK10762          5 LQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI   81 (501)
T ss_pred             EEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence            899999999963   47999999999999999999999999999999999999999999999999987665443 35789


Q ss_pred             EEEecCCCCCcc-cHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048556          340 GLVSQEPVLFTS-SIKDNINYGKDG------ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR  412 (478)
Q Consensus       340 ~~v~Q~~~lf~~-ti~eNl~~~~~~------~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lAR  412 (478)
                      +|+||++.+|.. |++||+.++...      .+.++..+     .+.+.++.+  |+.........+||||||||++|||
T Consensus        82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~  154 (501)
T PRK10762         82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA-----EADKLLARL--NLRFSSDKLVGELSIGEQQMVEIAK  154 (501)
T ss_pred             EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHH
Confidence            999999998876 999999986421      11222111     233455554  6665566777899999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          413 AILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       413 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++
T Consensus       155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~  221 (501)
T PRK10762        155 VLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIA  221 (501)
T ss_pred             HHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE
Confidence            9999999999999999999999999999998874 46899999999998866 99999999999864

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.4e-42  Score=339.38  Aligned_cols=205  Identities=25%  Similarity=0.429  Sum_probs=163.8

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      .++++|++++|++  ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..   ...++.+
T Consensus         6 ~l~~~~l~~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i   80 (272)
T PRK15056          6 GIVVNDVTVTWRN--GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLV   80 (272)
T ss_pred             eEEEEeEEEEecC--CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceE
Confidence            4899999999963  2479999999999999999999999999999999999999999999999998742   1223469


Q ss_pred             EEEecCCCC---CcccHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 048556          340 GLVSQEPVL---FTSSIKDNINYGKDG------ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAI  410 (478)
Q Consensus       340 ~~v~Q~~~l---f~~ti~eNl~~~~~~------~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~l  410 (478)
                      +|+||++.+   +..++++|+.++...      ...++..+     ...+.++.+  |+.........+|||||+||++|
T Consensus        81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv~l  153 (272)
T PRK15056         81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQ-----IVTAALARV--DMVEFRHRQIGELSGGQKKRVFL  153 (272)
T ss_pred             EEeccccccccCCCcchhhheecccccccccccCCCHHHHH-----HHHHHHHHc--CChhHhcCCcccCCHHHHHHHHH
Confidence            999999865   445899998754210      00011000     112233333  44444455677899999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          411 ARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       411 ARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||||+.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+++++ +|++++
T Consensus       154 araL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~  221 (272)
T PRK15056        154 ARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLA  221 (272)
T ss_pred             HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEe
Confidence            999999999999999999999999999999998875 46899999999998755 9999776 899875

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=100.00  E-value=4.4e-42  Score=330.47  Aligned_cols=187  Identities=33%  Similarity=0.475  Sum_probs=157.6

Q ss_pred             cccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc-cHHHHH
Q 048556          279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNI  357 (478)
Q Consensus       279 l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNl  357 (478)
                      |+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.     ..+|+||++.+|+. |++||+
T Consensus         1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l   75 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI   75 (230)
T ss_pred             CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence            578999999999999999999999999999999999999999999999876543     24899999999984 999999


Q ss_pred             hcCC----CCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 048556          358 NYGK----DGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE  433 (478)
Q Consensus       358 ~~~~----~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~  433 (478)
                      .++.    +..+.++..+     .+.++++.+  |++........+||||||||++|||||+.+|+++||||||++||+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~  148 (230)
T TIGR01184        76 ALAVDRVLPDLSKSERRA-----IVEEHIALV--GLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDAL  148 (230)
T ss_pred             HHHHHhcccCCCHHHHHH-----HHHHHHHHc--CCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHH
Confidence            8752    2222222111     123445444  5665666778899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          434 SERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       434 ~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +++.+.+.|+++.+  ++|+|++||+++.+.. ||++++|++|++++
T Consensus       149 ~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~  195 (230)
T TIGR01184       149 TRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAAN  195 (230)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEec
Confidence            99999999988742  6899999999998765 99999999999875

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=6.4e-42  Score=365.77  Aligned_cols=206  Identities=27%  Similarity=0.464  Sum_probs=176.8

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhh-cc
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIR-GK  338 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r-~~  338 (478)
                      -++++|++++|++   +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++ +.
T Consensus        11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~   87 (510)
T PRK15439         11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG   87 (510)
T ss_pred             eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence            4899999999963   4699999999999999999999999999999999999999999999999999877765554 56


Q ss_pred             eEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556          339 IGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD  417 (478)
Q Consensus       339 i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~  417 (478)
                      ++|+||++.+|+. |++||+.++....  .+..     ..+.++++.+  |++........+||||||||++|||||+.+
T Consensus        88 i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~aL~~~  158 (510)
T PRK15439         88 IYLVPQEPLLFPNLSVKENILFGLPKR--QASM-----QKMKQLLAAL--GCQLDLDSSAGSLEVADRQIVEILRGLMRD  158 (510)
T ss_pred             EEEEeccCccCCCCcHHHHhhcccccc--hHHH-----HHHHHHHHHc--CCCccccCChhhCCHHHHHHHHHHHHHHcC
Confidence            9999999998876 9999999865321  1111     1123444444  566566677889999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          418 PRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       418 ~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++
T Consensus       159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~  220 (510)
T PRK15439        159 SRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIAL  220 (510)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999998875 46899999999998865 99999999999874

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.9e-42  Score=366.99  Aligned_cols=208  Identities=24%  Similarity=0.417  Sum_probs=176.8

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHH-hhcc
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW-IRGK  338 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~  338 (478)
                      -++++|++++|++   +++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+... .++.
T Consensus         5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~   81 (510)
T PRK09700          5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG   81 (510)
T ss_pred             eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence            3899999999963   46999999999999999999999999999999999999999999999999998777554 3467


Q ss_pred             eEEEecCCCCCcc-cHHHHHhcCCCCC---------CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 048556          339 IGLVSQEPVLFTS-SIKDNINYGKDGA---------SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRI  408 (478)
Q Consensus       339 i~~v~Q~~~lf~~-ti~eNl~~~~~~~---------~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl  408 (478)
                      ++||||++.+|.. |++||+.++....         +.++..     ..+.+.++.+  |+.........+||||||||+
T Consensus        82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv  154 (510)
T PRK09700         82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMR-----VRAAMMLLRV--GLKVDLDEKVANLSISHKQML  154 (510)
T ss_pred             eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHH-----HHHHHHHHHc--CCCCCcccchhhCCHHHHHHH
Confidence            9999999998876 9999998753210         111111     1234455555  666556677889999999999


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          409 AIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       409 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +|||||+.+|++|||||||++||+.+++.+.+.|+++. +++|+|+|||+++.+.. ||++++|++|++++
T Consensus       155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~  225 (510)
T PRK09700        155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVC  225 (510)
T ss_pred             HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEee
Confidence            99999999999999999999999999999999998875 46899999999999876 99999999999864

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=3.5e-43  Score=316.89  Aligned_cols=212  Identities=24%  Similarity=0.433  Sum_probs=182.2

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh-hcc
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI-RGK  338 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~  338 (478)
                      .+..+|+.++|..   +++++++||++++||+|++.||||+||||.+.++.|+.+|++|+|.+||.|++.++.... |--
T Consensus         4 ~L~a~~l~K~y~k---r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG   80 (243)
T COG1137           4 TLVAENLAKSYKK---RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG   80 (243)
T ss_pred             EEEehhhhHhhCC---eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence            4788999999963   589999999999999999999999999999999999999999999999999999997664 444


Q ss_pred             eEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556          339 IGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD  417 (478)
Q Consensus       339 i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~  417 (478)
                      |+|+||++.+|.+ |++|||...-.- .......+.++..+.+.++.+  .+.+.-...+..||||||+|+.|||||..+
T Consensus        81 igYLpQE~SIFr~LtV~dNi~~vlE~-~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~~  157 (243)
T COG1137          81 IGYLPQEASIFRKLTVEDNIMAVLEI-REKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAAN  157 (243)
T ss_pred             cccccccchHhhcCcHHHHHHHHHhh-hhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhcC
Confidence            9999999999988 999999875432 221222233444455556655  577777888999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCch-hhhhcCEEEEEeCCEEee
Q 048556          418 PRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLS-TVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       418 ~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~-~~~~~d~i~vl~~G~i~~  477 (478)
                      |+.++|||||+++||.+...|.+.++.++ .+--|++..|+.. ++.-|||.+++.+|++..
T Consensus       158 P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla  219 (243)
T COG1137         158 PKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLA  219 (243)
T ss_pred             CCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEe
Confidence            99999999999999999999999999886 4678899999976 577799999999999864

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=100.00  E-value=5.5e-42  Score=333.49  Aligned_cols=201  Identities=24%  Similarity=0.400  Sum_probs=169.1

Q ss_pred             EEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEE
Q 048556          262 ELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGL  341 (478)
Q Consensus       262 ~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~  341 (478)
                      +++||++.       .+|+|+||+|++||+++|+||||||||||+++|+|++++ +|+|.++|.++.+.+...+++.++|
T Consensus         2 ~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~   73 (248)
T PRK03695          2 QLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAY   73 (248)
T ss_pred             cccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEE
Confidence            46777773       279999999999999999999999999999999999964 8999999999988888888888999


Q ss_pred             EecCCCCC-cccHHHHHhcCCCCC-CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC---
Q 048556          342 VSQEPVLF-TSSIKDNINYGKDGA-SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK---  416 (478)
Q Consensus       342 v~Q~~~lf-~~ti~eNl~~~~~~~-~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~---  416 (478)
                      +||++.++ ..|+++|+.++.+.. ..++.     ...+.+.++.+  |++.........||||||||++|||||+.   
T Consensus        74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~  146 (248)
T PRK03695         74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAV-----ASALNEVAEAL--GLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWP  146 (248)
T ss_pred             ecccCccCCCccHHHHHHhcCccCCCcHHH-----HHHHHHHHHHc--CCHhHhcCCcccCCHHHHHHHHHHHHHhcccc
Confidence            99998655 569999999874321 11111     11234455555  66666677789999999999999999997   


Q ss_pred             ----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          417 ----DPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       417 ----~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                          +|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus       147 ~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~  213 (248)
T PRK03695        147 DINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLA  213 (248)
T ss_pred             ccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence                679999999999999999999999998875 46899999999997655 99999999999875

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=3.3e-42  Score=357.08  Aligned_cols=215  Identities=32%  Similarity=0.496  Sum_probs=172.3

Q ss_pred             cEEEEeEEEECCCC--------CCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCee--cCC
Q 048556          260 DIELKDIYFSYPSR--------PGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVN--LKE  329 (478)
Q Consensus       260 ~i~~~~v~~~y~~~--------~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~--~~~  329 (478)
                      -++++|+++.|..+        ....+++|+||++++||++||||+||||||||.|+|+|+.+|++|+|.++|.+  ++.
T Consensus       280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~  359 (539)
T COG1123         280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG  359 (539)
T ss_pred             eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccccc
Confidence            47899999999741        12468999999999999999999999999999999999999999999999987  232


Q ss_pred             CCHHHhhcceEEEecCCCC--Cc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-cccCCCCCCChHHH
Q 048556          330 FQLKWIRGKIGLVSQEPVL--FT-SSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDT-MVGEHGTQLSGGQK  405 (478)
Q Consensus       330 ~~~~~~r~~i~~v~Q~~~l--f~-~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t-~~~~~g~~LSgGq~  405 (478)
                      -+....|+++-+|+|+|+-  -+ .||+++|.-.-..+....  .+...+.+.+.++..  |+.. .+...+.+||||||
T Consensus       360 ~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~--~~~~~~rv~~ll~~V--gL~~~~l~ryP~elSGGQr  435 (539)
T COG1123         360 GELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGS--GAERRARVAELLELV--GLPPEFLDRYPHELSGGQR  435 (539)
T ss_pred             chhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccc--hHHHHHHHHHHHHHc--CCCHHHHhcCchhcCcchh
Confidence            2344567899999999974  33 499999974321111000  111111222222222  3333 56778899999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEeeC
Q 048556          406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVEK  478 (478)
Q Consensus       406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~  478 (478)
                      ||+||||||..+|+++|+|||||+||+.+...+.+.|+++.+  +.|.++|||++..+++ ||||+||++|+|||.
T Consensus       436 QRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~  511 (539)
T COG1123         436 QRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEE  511 (539)
T ss_pred             HHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEe
Confidence            999999999999999999999999999999999999998864  6899999999999998 999999999999984

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.4e-42  Score=365.08  Aligned_cols=205  Identities=23%  Similarity=0.384  Sum_probs=174.3

Q ss_pred             EEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH-HHhhcceEE
Q 048556          263 LKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL-KWIRGKIGL  341 (478)
Q Consensus       263 ~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~i~~  341 (478)
                      ++|++++|++   +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. +.+++.++|
T Consensus         1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~   77 (491)
T PRK10982          1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM   77 (491)
T ss_pred             CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence            3689999963   479999999999999999999999999999999999999999999999999876654 345778999


Q ss_pred             EecCCCCCcc-cHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556          342 VSQEPVLFTS-SIKDNINYGKDG-----ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL  415 (478)
Q Consensus       342 v~Q~~~lf~~-ti~eNl~~~~~~-----~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall  415 (478)
                      +||++.+|.. |++||+.++...     .+.++..     ..+.++++.+  |++........+||||||||++|||||+
T Consensus        78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~  150 (491)
T PRK10982         78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMY-----RDTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS  150 (491)
T ss_pred             EecccccccCCCHHHHhhcccccccccccCHHHHH-----HHHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence            9999988765 999999876421     1122211     1234555655  6666667778999999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          416 KDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      .+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus       151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~  214 (491)
T PRK10982        151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIA  214 (491)
T ss_pred             hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEe
Confidence            9999999999999999999999999998875 46899999999998865 99999999999875

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=1.1e-41  Score=324.12  Aligned_cols=196  Identities=21%  Similarity=0.301  Sum_probs=164.9

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      -++++|++++|++   +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...   ..++.+
T Consensus        11 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i   84 (214)
T PRK13543         11 LLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFM   84 (214)
T ss_pred             eEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhce
Confidence            4899999999963   4699999999999999999999999999999999999999999999999988653   345679


Q ss_pred             EEEecCCCCCcc-cHHHHHhcCCC--CCCH-HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556          340 GLVSQEPVLFTS-SIKDNINYGKD--GASI-AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL  415 (478)
Q Consensus       340 ~~v~Q~~~lf~~-ti~eNl~~~~~--~~~~-~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall  415 (478)
                      +|++|++.+|++ |++||+.++..  .... +...         +++..+  |+..........||||||||++||||++
T Consensus        85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~---------~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~  153 (214)
T PRK13543         85 AYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPG---------SALAIV--GLAGYEDTLVRQLSAGQKKRLALARLWL  153 (214)
T ss_pred             EEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHH---------HHHHHc--CChhhccCChhhCCHHHHHHHHHHHHHh
Confidence            999999999987 99999976532  1111 1222         223332  4444445667899999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeC
Q 048556          416 KDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQ  472 (478)
Q Consensus       416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~  472 (478)
                      ++|+++||||||++||+.+.+.+.+.+++.. +++|+|++||+++.+.. ||++++++.
T Consensus       154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~  212 (214)
T PRK13543        154 SPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA  212 (214)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence            9999999999999999999999999998764 46899999999998866 899999874

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=4.1e-42  Score=320.74  Aligned_cols=210  Identities=28%  Similarity=0.489  Sum_probs=181.8

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh-hcce
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI-RGKI  339 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i  339 (478)
                      +++++++++|.+   -.+++|+||++++||+++|+|||||||||++|+|.|+|+|++|+|.++|.|++.+++..+ |.-+
T Consensus         5 L~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi   81 (250)
T COG0411           5 LEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI   81 (250)
T ss_pred             eeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence            678999999964   479999999999999999999999999999999999999999999999999999998775 4459


Q ss_pred             EEEecCCCCCcc-cHHHHHhcCCCCC-----------CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 048556          340 GLVSQEPVLFTS-SIKDNINYGKDGA-----------SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQR  407 (478)
Q Consensus       340 ~~v~Q~~~lf~~-ti~eNl~~~~~~~-----------~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qr  407 (478)
                      +--+|.+.+|++ |+.||+..+....           ...+..++.+  .+.++++.+  |++..-++...+||+||++|
T Consensus        82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e--~A~~~Le~v--gL~~~a~~~A~~LsyG~qR~  157 (250)
T COG0411          82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARE--RARELLEFV--GLGELADRPAGNLSYGQQRR  157 (250)
T ss_pred             eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHH--HHHHHHHHc--CCchhhcchhhcCChhHhHH
Confidence            999999999987 9999999874211           0011112222  224455555  88888889999999999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          408 IAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       408 l~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +.|||||+.+|++|+||||.++|.+.....+.+.|+++.+  +.|+++|-|||..+.. ||||+||+.|+++.
T Consensus       158 LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IA  230 (250)
T COG0411         158 LEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIA  230 (250)
T ss_pred             HHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcc
Confidence            9999999999999999999999999999999999999875  4899999999999877 99999999999764

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=100.00  E-value=8.5e-42  Score=321.03  Aligned_cols=192  Identities=22%  Similarity=0.315  Sum_probs=159.7

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++|+++.|++   +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++
T Consensus         1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~   76 (198)
T TIGR01189         1 LAARNLACSRGE---RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNIL   76 (198)
T ss_pred             CEEEEEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheE
Confidence            478999999963   47999999999999999999999999999999999999999999999999987765 45678899


Q ss_pred             EEecCCCCCc-ccHHHHHhcCCCCCC--HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556          341 LVSQEPVLFT-SSIKDNINYGKDGAS--IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD  417 (478)
Q Consensus       341 ~v~Q~~~lf~-~ti~eNl~~~~~~~~--~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~  417 (478)
                      |++|++.+|+ .|++||+.++.+...  .+++.++++..++.+           .......+||||||||++||||++++
T Consensus        77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~la~al~~~  145 (198)
T TIGR01189        77 YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTG-----------FEDLPAAQLSAGQQRRLALARLWLSR  145 (198)
T ss_pred             EeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHH-----------HhcCChhhcCHHHHHHHHHHHHHhcC
Confidence            9999999887 599999987532211  223444444444443           33445678999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEE
Q 048556          418 PRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIA  468 (478)
Q Consensus       418 ~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~  468 (478)
                      |++++|||||++||+.+++.+.+.|+++. +++|+|++||+...+. |++.+
T Consensus       146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~~~  196 (198)
T TIGR01189       146 APLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV-EAREL  196 (198)
T ss_pred             CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ceEEe
Confidence            99999999999999999999999998864 5689999999985443 35554

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=1.5e-41  Score=321.67  Aligned_cols=194  Identities=24%  Similarity=0.373  Sum_probs=163.2

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++|+++.|++   +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..  .. .++.++
T Consensus         3 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~~   76 (207)
T PRK13539          3 LEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEACH   76 (207)
T ss_pred             EEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhcE
Confidence            789999999963   469999999999999999999999999999999999999999999999998653  22 788899


Q ss_pred             EEecCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556          341 LVSQEPVLFT-SSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD  417 (478)
Q Consensus       341 ~v~Q~~~lf~-~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~  417 (478)
                      |++|++.++. .|++||+.+...  ...++++.++++..++.+           .......+|||||+||++||||++++
T Consensus        77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~al~~~  145 (207)
T PRK13539         77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAP-----------LAHLPFGYLSAGQKRRVALARLLVSN  145 (207)
T ss_pred             EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHH-----------HHcCChhhcCHHHHHHHHHHHHHhcC
Confidence            9999887764 699999987432  122334444554444433           33344568999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEEeC
Q 048556          418 PRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIAVIHQ  472 (478)
Q Consensus       418 ~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl~~  472 (478)
                      |+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. |+++.++.
T Consensus       146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~  200 (207)
T PRK13539        146 RPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP  200 (207)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence            99999999999999999999999998764 57899999999999988 99988754

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=100.00  E-value=2.1e-41  Score=329.66  Aligned_cols=191  Identities=26%  Similarity=0.472  Sum_probs=163.0

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      -++++|++++|++   +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|           +..+
T Consensus         4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i   69 (251)
T PRK09544          4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRI   69 (251)
T ss_pred             EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCE
Confidence            3899999999963   4699999999999999999999999999999999999999999999986           3469


Q ss_pred             EEEecCCCCCc---ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556          340 GLVSQEPVLFT---SSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK  416 (478)
Q Consensus       340 ~~v~Q~~~lf~---~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~  416 (478)
                      +|+||++.++.   .|+++|+.+.. ...++++.++++..++.+++           ......|||||+||++||||++.
T Consensus        70 ~~v~q~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qrv~laral~~  137 (251)
T PRK09544         70 GYVPQKLYLDTTLPLTVNRFLRLRP-GTKKEDILPALKRVQAGHLI-----------DAPMQKLSGGETQRVLLARALLN  137 (251)
T ss_pred             EEeccccccccccChhHHHHHhccc-cccHHHHHHHHHHcCChHHH-----------hCChhhCCHHHHHHHHHHHHHhc
Confidence            99999998765   38999987642 33455566666665554433           34567899999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +|+++||||||++||+.+++.+.+.|+++.+  ++|+|++||+++.+.. ||++++|++ ++++
T Consensus       138 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~  200 (251)
T PRK09544        138 RPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICC  200 (251)
T ss_pred             CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEe
Confidence            9999999999999999999999999988753  6899999999999865 999999965 6654

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.1e-41  Score=361.45  Aligned_cols=207  Identities=28%  Similarity=0.467  Sum_probs=173.4

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC--CccEEEECCeecCCCCHHH-hhc
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGVNLKEFQLKW-IRG  337 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~~~~~~~~~-~r~  337 (478)
                      ++++|++++|++   +++|+|+||++++||+++|+||||||||||+++|+|+++|  ++|+|.++|.++...+... .++
T Consensus         2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~   78 (500)
T TIGR02633         2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA   78 (500)
T ss_pred             EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence            689999999963   4699999999999999999999999999999999999987  7999999999998776544 456


Q ss_pred             ceEEEecCCCCCcc-cHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccccc-cCCCCCCChHHHHHHH
Q 048556          338 KIGLVSQEPVLFTS-SIKDNINYGKDG------ASIAEIMAAAELANAAKFIDSLPQGLDTMV-GEHGTQLSGGQKQRIA  409 (478)
Q Consensus       338 ~i~~v~Q~~~lf~~-ti~eNl~~~~~~------~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~-~~~g~~LSgGq~Qrl~  409 (478)
                      .++||||++.+|+. |++||+.++...      ...++..     ..+.+.++.+  |++... .....+||||||||++
T Consensus        79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~  151 (500)
T TIGR02633        79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMY-----LRAKNLLREL--QLDADNVTRPVGDYGGGQQQLVE  151 (500)
T ss_pred             CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHH-----HHHHHHHHHc--CCCCCcccCchhhCCHHHHHHHH
Confidence            79999999988876 999999886421      1112211     1234455555  454332 3446789999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          410 IARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       410 lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |||||+.+|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++
T Consensus       152 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~  221 (500)
T TIGR02633       152 IAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVA  221 (500)
T ss_pred             HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEee
Confidence            9999999999999999999999999999999998875 46899999999999876 99999999999864

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=100.00  E-value=1.5e-41  Score=325.44  Aligned_cols=203  Identities=28%  Similarity=0.380  Sum_probs=162.8

Q ss_pred             EEEEeEEEECCCC---C-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEEC--Ce--ecCCCCH
Q 048556          261 IELKDIYFSYPSR---P-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID--GV--NLKEFQL  332 (478)
Q Consensus       261 i~~~~v~~~y~~~---~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~--g~--~~~~~~~  332 (478)
                      ++++|++++|++.   + ..++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++  |.  ++..++.
T Consensus         2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~   81 (224)
T TIGR02324         2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP   81 (224)
T ss_pred             EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence            6899999999631   1 1469999999999999999999999999999999999999999999998  42  6655554


Q ss_pred             HH---h-hcceEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCcccc-ccCCCCCCChHH
Q 048556          333 KW---I-RGKIGLVSQEPVLFTS-SIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTM-VGEHGTQLSGGQ  404 (478)
Q Consensus       333 ~~---~-r~~i~~v~Q~~~lf~~-ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~-~~~~g~~LSgGq  404 (478)
                      ..   + ++.++|+||++.+|+. |++||+.+...  ....++..+     .+.++++.+  |++.. ....+.+|||||
T Consensus        82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~G~  154 (224)
T TIGR02324        82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARA-----RARELLARL--NIPERLWHLPPATFSGGE  154 (224)
T ss_pred             HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhhCCcccCCHHH
Confidence            43   2 4579999999998876 99999976321  112112111     123344444  44332 245678999999


Q ss_pred             HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEE
Q 048556          405 KQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVR-NADLIAVI  470 (478)
Q Consensus       405 ~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl  470 (478)
                      |||++|||||+.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. .||+++.+
T Consensus       155 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~  222 (224)
T TIGR02324       155 QQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV  222 (224)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence            999999999999999999999999999999999999999875 4689999999999886 49999876

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-41  Score=370.31  Aligned_cols=211  Identities=28%  Similarity=0.429  Sum_probs=174.9

Q ss_pred             cEEEEeEEEECCCCC--------CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC
Q 048556          260 DIELKDIYFSYPSRP--------GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ  331 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~--------~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~  331 (478)
                      -++++|+++.|+.+.        ..++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus       313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~  392 (623)
T PRK10261        313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS  392 (623)
T ss_pred             eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence            489999999996211        136999999999999999999999999999999999999999999999999998765


Q ss_pred             HH---HhhcceEEEecCC--CCCcc-cHHHHHhcCCC--CC-CHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCC
Q 048556          332 LK---WIRGKIGLVSQEP--VLFTS-SIKDNINYGKD--GA-SIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLS  401 (478)
Q Consensus       332 ~~---~~r~~i~~v~Q~~--~lf~~-ti~eNl~~~~~--~~-~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LS  401 (478)
                      ..   .+|+.|+||||++  .+++. |+.||+.++..  .. ..++..     ..+.++++.+  |++ ........+||
T Consensus       393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~~L~~~--gL~~~~~~~~~~~LS  465 (623)
T PRK10261        393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAA-----ARVAWLLERV--GLLPEHAWRYPHEFS  465 (623)
T ss_pred             HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHH-----HHHHHHHHHc--CCCHHHhhCCcccCC
Confidence            43   3577899999998  47765 99999976421  11 111111     1223455554  664 34567788999


Q ss_pred             hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       402 gGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+  +.|+|+|||+++.+.. ||+|++|++|++++
T Consensus       466 gGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~  544 (623)
T PRK10261        466 GGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVE  544 (623)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999988753  6899999999999876 99999999999986

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=100.00  E-value=1.4e-41  Score=326.98  Aligned_cols=191  Identities=30%  Similarity=0.437  Sum_probs=155.8

Q ss_pred             ccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC----CccEEEECCeecCCCCHHHhhcceEEEecCCC-CC-c-
Q 048556          278 IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP----QAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPV-LF-T-  350 (478)
Q Consensus       278 ~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~----~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~-lf-~-  350 (478)
                      +++|+||+|++||+++|+||||||||||+++|+|+++|    ++|+|.++|+++...  +..++.++|++|++. .| + 
T Consensus         1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~   78 (230)
T TIGR02770         1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL   78 (230)
T ss_pred             CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence            57899999999999999999999999999999999999    899999999998654  223468999999985 34 4 


Q ss_pred             ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc---ccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeC
Q 048556          351 SSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLD---TMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE  425 (478)
Q Consensus       351 ~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~---t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDE  425 (478)
                      .|+.+|+.+....  ...++.     ...+.+.++.+  |++   +.....+.+||||||||++||||++++|+++||||
T Consensus        79 ~t~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDE  151 (230)
T TIGR02770        79 FTMGNHAIETLRSLGKLSKQA-----RALILEALEAV--GLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADE  151 (230)
T ss_pred             cCHHHHHHHHHHHcCccHHHH-----HHHHHHHHHHc--CCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            4899998653211  111111     11123344443  443   45677788999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          426 ATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       426 pts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||++||+.+++.+.+.|+++.+  ++|+|++||+++.+.. ||++++|++|++++
T Consensus       152 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  206 (230)
T TIGR02770       152 PTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVE  206 (230)
T ss_pred             CccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999998753  6899999999999865 99999999999875

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.3e-41  Score=347.41  Aligned_cols=208  Identities=31%  Similarity=0.475  Sum_probs=178.9

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh-hcc
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI-RGK  338 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~  338 (478)
                      -++++|++++|++   .++|+|+||++++||++|++|.||||||||+|+|+|.|+|++|+|.+||+++.-.++.+- ..-
T Consensus         8 ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G   84 (500)
T COG1129           8 LLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG   84 (500)
T ss_pred             eeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence            4889999999974   579999999999999999999999999999999999999999999999999987776554 455


Q ss_pred             eEEEecCCCCCcc-cHHHHHhcCCCCCC------HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 048556          339 IGLVSQEPVLFTS-SIKDNINYGKDGAS------IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIA  411 (478)
Q Consensus       339 i~~v~Q~~~lf~~-ti~eNl~~~~~~~~------~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lA  411 (478)
                      |+.|.|+..|++. ||.|||-+|+....      ..++.+.+     .+.+..+  |++........+||.||||.++||
T Consensus        85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A-----~~~l~~l--g~~~~~~~~v~~LsiaqrQ~VeIA  157 (500)
T COG1129          85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRA-----RELLARL--GLDIDPDTLVGDLSIAQRQMVEIA  157 (500)
T ss_pred             cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHH-----HHHHHHc--CCCCChhhhhhhCCHHHHHHHHHH
Confidence            9999999999987 99999999975432      23333222     2344444  332225556678999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          412 RAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||+..+++++|||||||+|+....+.+++.+++++ ++.++|+||||++.+.. ||||.||.||+.+.
T Consensus       158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~  225 (500)
T COG1129         158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVG  225 (500)
T ss_pred             HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEee
Confidence            99999999999999999999999999999999987 57999999999998876 99999999999874

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.3e-41  Score=325.68  Aligned_cols=207  Identities=33%  Similarity=0.560  Sum_probs=174.4

Q ss_pred             cEEEEeEEEECCCCCC---------------------CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCcc
Q 048556          260 DIELKDIYFSYPSRPG---------------------EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG  318 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~---------------------~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G  318 (478)
                      .|+++||++-|..++.                     .--++|+||+|+.||+..|.|-||||||||++++.|+++|+.|
T Consensus         4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G   83 (386)
T COG4175           4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG   83 (386)
T ss_pred             eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence            4778888877753210                     1248899999999999999999999999999999999999999


Q ss_pred             EEEECCeecCCCCHHHh----hcceEEEecCCCCCcc-cHHHHHhcCCCCC--C----HHHHHHHHHHhcHHHHHHhCCC
Q 048556          319 EVLIDGVNLKEFQLKWI----RGKIGLVSQEPVLFTS-SIKDNINYGKDGA--S----IAEIMAAAELANAAKFIDSLPQ  387 (478)
Q Consensus       319 ~i~~~g~~~~~~~~~~~----r~~i~~v~Q~~~lf~~-ti~eNl~~~~~~~--~----~~~~~~a~~~~~~~~~i~~lp~  387 (478)
                      +|+++|.|+..++.+++    |+++++|+|..-||+- |+.||..||-.-.  .    .+...++++.+|+.+|-     
T Consensus        84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~-----  158 (386)
T COG4175          84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYA-----  158 (386)
T ss_pred             eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhh-----
Confidence            99999999999998776    4669999999999987 9999999986322  2    22334445555555444     


Q ss_pred             CccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhh-hhc
Q 048556          388 GLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTV-RNA  464 (478)
Q Consensus       388 g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~-~~~  464 (478)
                            ...+.+|||||+||+.|||||..+|+||++|||||+|||--+.+..+-|.++.  -+||+++|||++++. +-.
T Consensus       159 ------~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG  232 (386)
T COG4175         159 ------DKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG  232 (386)
T ss_pred             ------hcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence                  44568899999999999999999999999999999999999999999887764  379999999999975 559


Q ss_pred             CEEEEEeCCEEee
Q 048556          465 DLIAVIHQGKLVE  477 (478)
Q Consensus       465 d~i~vl~~G~i~~  477 (478)
                      |||..|++|+|++
T Consensus       233 ~rIaimkdG~ivQ  245 (386)
T COG4175         233 DRIAIMKDGEIVQ  245 (386)
T ss_pred             ceEEEecCCeEEE
Confidence            9999999999986

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=100.00  E-value=2.6e-41  Score=315.69  Aligned_cols=178  Identities=33%  Similarity=0.526  Sum_probs=146.4

Q ss_pred             CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCC--CCHHHhhcceEEEecCC--CCCcc
Q 048556          276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE--FQLKWIRGKIGLVSQEP--VLFTS  351 (478)
Q Consensus       276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~--~~~~~~r~~i~~v~Q~~--~lf~~  351 (478)
                      +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..  .+...+++.++|+||++  .+|..
T Consensus         5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~   84 (190)
T TIGR01166         5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA   84 (190)
T ss_pred             cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence            469999999999999999999999999999999999999999999999999852  23345678899999998  47778


Q ss_pred             cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCC
Q 048556          352 SIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA  429 (478)
Q Consensus       352 ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~  429 (478)
                      |++||+.++..  ..+.++..+.     +.+.++.+  |++........+|||||+||++|||||+++|+++||||||++
T Consensus        85 tv~~nl~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~  157 (190)
T TIGR01166        85 DVDQDVAFGPLNLGLSEAEVERR-----VREALTAV--GASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAG  157 (190)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence            99999987531  1222222111     12333333  454455566789999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhc-CCCeEEEEecCchh
Q 048556          430 LDAESERVVQEALDKIM-INRTTVIVAHRLST  460 (478)
Q Consensus       430 LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~  460 (478)
                      ||+.+++.+.+.|+++. +++|+|++||+++.
T Consensus       158 LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~  189 (190)
T TIGR01166       158 LDPAGREQMLAILRRLRAEGMTVVISTHDVDL  189 (190)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence            99999999999998875 46899999999864

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=6.1e-41  Score=356.97  Aligned_cols=201  Identities=19%  Similarity=0.296  Sum_probs=170.6

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      |+++|++++|++   .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+...+++.++
T Consensus         4 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~   80 (490)
T PRK10938          4 LQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS   80 (490)
T ss_pred             EEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence            789999999963   36999999999999999999999999999999999999999999999998887767666778899


Q ss_pred             EEecCCCC--C-------cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 048556          341 LVSQEPVL--F-------TSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIA  411 (478)
Q Consensus       341 ~v~Q~~~l--f-------~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lA  411 (478)
                      |++|++.+  +       ..|+++|+.++.  ...+++.         +.++.+  |++........+||||||||++||
T Consensus        81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---------~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la  147 (490)
T PRK10938         81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDEV--KDPARCE---------QLAQQF--GITALLDRRFKYLSTGETRKTLLC  147 (490)
T ss_pred             eeccCcchhhcccchhhccccHHHhcccch--hHHHHHH---------HHHHHc--CCHhhhhCCcccCCHHHHHHHHHH
Confidence            99998753  2       348888886531  1112233         334443  555555667789999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          412 RAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|+++.
T Consensus       148 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~  215 (490)
T PRK10938        148 QALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAE  215 (490)
T ss_pred             HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999998875 36899999999998876 99999999999864

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.2e-41  Score=358.09  Aligned_cols=216  Identities=24%  Similarity=0.381  Sum_probs=174.5

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC-CCccEEEECCeecCCCCH-HHhhc
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-PQAGEVLIDGVNLKEFQL-KWIRG  337 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-~~~G~i~~~g~~~~~~~~-~~~r~  337 (478)
                      -++++|+++.|+...+.++++|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.++...+. +..++
T Consensus       259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~  338 (506)
T PRK13549        259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ  338 (506)
T ss_pred             eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence            4899999999953112469999999999999999999999999999999999998 599999999999865543 34567


Q ss_pred             ceEEEecCC---CCCcc-cHHHHHhcCCCC-CCH-HHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHH
Q 048556          338 KIGLVSQEP---VLFTS-SIKDNINYGKDG-ASI-AEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQKQRIAI  410 (478)
Q Consensus       338 ~i~~v~Q~~---~lf~~-ti~eNl~~~~~~-~~~-~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~Qrl~l  410 (478)
                      .++|+||++   .+|+. |+.||+.++... ... ...........+.++++.+  |++ ........+||||||||++|
T Consensus       339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrv~l  416 (506)
T PRK13549        339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRL--KVKTASPELAIARLSGGNQQKAVL  416 (506)
T ss_pred             CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhc--CccCCCcccccccCCHHHHHHHHH
Confidence            899999996   46654 999999875310 000 0000011112345566666  564 34567788999999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          411 ARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       411 ARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |||++.+|++|||||||++||+.+.+.+++.|+++. +++|+|++||+++.+.. ||++++|++|+++.
T Consensus       417 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~  485 (506)
T PRK13549        417 AKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKG  485 (506)
T ss_pred             HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999999999998875 47899999999998866 99999999999863

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=100.00  E-value=7.4e-41  Score=320.67  Aligned_cols=195  Identities=25%  Similarity=0.333  Sum_probs=156.1

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      +.++|+++.|.+   +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...          
T Consensus        23 l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~----------   89 (224)
T cd03220          23 LGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL----------   89 (224)
T ss_pred             hhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh----------
Confidence            677888888863   4799999999999999999999999999999999999999999999999876321          


Q ss_pred             EEecCCCCC-cccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556          341 LVSQEPVLF-TSSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD  417 (478)
Q Consensus       341 ~v~Q~~~lf-~~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~  417 (478)
                        .+...++ ..|++||+.++...  .+.++..+.     +.+.++.+  |++........+||||||||++||||++++
T Consensus        90 --~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~  160 (224)
T cd03220          90 --GLGGGFNPELTGRENIYLNGRLLGLSRKEIDEK-----IDEIIEFS--ELGDFIDLPVKTYSSGMKARLAFAIATALE  160 (224)
T ss_pred             --cccccCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence              1112222 46999999875321  122222111     12223222  444445556678999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          418 PRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       418 ~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |+++||||||++||+.+++.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++
T Consensus       161 p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  222 (224)
T cd03220         161 PDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRF  222 (224)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence            99999999999999999999999998875 45899999999998765 99999999999875

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=4.5e-41  Score=361.05  Aligned_cols=210  Identities=30%  Similarity=0.493  Sum_probs=173.3

Q ss_pred             cEEEEeEEEECCCC--------CCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC
Q 048556          260 DIELKDIYFSYPSR--------PGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ  331 (478)
Q Consensus       260 ~i~~~~v~~~y~~~--------~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~  331 (478)
                      -++++|+++.|+..        .++++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++...+
T Consensus       275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~  353 (529)
T PRK15134        275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLN  353 (529)
T ss_pred             cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccc
Confidence            48999999999521        12469999999999999999999999999999999999994 8999999999987765


Q ss_pred             HHH---hhcceEEEecCC--CCCcc-cHHHHHhcCCC----CCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCC
Q 048556          332 LKW---IRGKIGLVSQEP--VLFTS-SIKDNINYGKD----GASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQL  400 (478)
Q Consensus       332 ~~~---~r~~i~~v~Q~~--~lf~~-ti~eNl~~~~~----~~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~L  400 (478)
                      ...   +|+.++|+||++  .+|+. |++||+.++..    .....+.     ...+.++++.+  |+. ........+|
T Consensus       354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~L  426 (529)
T PRK15134        354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQR-----EQQVIAVMEEV--GLDPETRHRYPAEF  426 (529)
T ss_pred             hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHH-----HHHHHHHHHHc--CCCHHHHhcCCccC
Confidence            433   467899999998  37765 99999987521    0111111     11234455555  564 3456778899


Q ss_pred             ChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          401 SGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       401 SgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |||||||++|||||+.+|+++||||||++||+.+.+.+++.|+++.+  ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus       427 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~  506 (529)
T PRK15134        427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVE  506 (529)
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999998753  6899999999998876 99999999999975

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=8.5e-41  Score=358.88  Aligned_cols=211  Identities=30%  Similarity=0.483  Sum_probs=170.7

Q ss_pred             cEEEEeEEEECCCC-CCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----CccEEEECCeecCCCCHH
Q 048556          260 DIELKDIYFSYPSR-PGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGVNLKEFQLK  333 (478)
Q Consensus       260 ~i~~~~v~~~y~~~-~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~~~~~~~~  333 (478)
                      -++++|++++|++. ..+++|+|+||+|++||++||+||||||||||+++|+|+++|     ++|+|.++|.++..++..
T Consensus         5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~   84 (529)
T PRK15134          5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ   84 (529)
T ss_pred             eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence            38999999999631 124799999999999999999999999999999999999986     799999999999877644


Q ss_pred             H---hh-cceEEEecCCC--CCc-ccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCccc---cccCCCCCC
Q 048556          334 W---IR-GKIGLVSQEPV--LFT-SSIKDNINYGK---DGASIAEIMAAAELANAAKFIDSLPQGLDT---MVGEHGTQL  400 (478)
Q Consensus       334 ~---~r-~~i~~v~Q~~~--lf~-~ti~eNl~~~~---~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t---~~~~~g~~L  400 (478)
                      +   +| +.++|+||++.  +++ .|+++|+.++.   ...+.++..     ..+.+.++.+  |++.   .......+|
T Consensus        85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~~~L  157 (529)
T PRK15134         85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAAR-----GEILNCLDRV--GIRQAAKRLTDYPHQL  157 (529)
T ss_pred             HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHC--CCCChHHHHhhCCccc
Confidence            3   33 57999999985  454 48999986421   111222211     1123344444  4432   345678899


Q ss_pred             ChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          401 SGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       401 SgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.  .++|+|+|||+++.+.. ||+|++|++|++++
T Consensus       158 SgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~  237 (529)
T PRK15134        158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE  237 (529)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999998875  36899999999998875 99999999999874

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=9e-41  Score=324.46  Aligned_cols=210  Identities=30%  Similarity=0.504  Sum_probs=167.6

Q ss_pred             EEEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC-C----CccEEEECCeecCCCCHHH
Q 048556          261 IELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-P----QAGEVLIDGVNLKEFQLKW  334 (478)
Q Consensus       261 i~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-~----~~G~i~~~g~~~~~~~~~~  334 (478)
                      ++++|++..|.... ...+++|+||++++||++||||+|||||||+.+.|+|+.+ |    .+|+|.++|.|+..++.++
T Consensus         2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~   81 (316)
T COG0444           2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE   81 (316)
T ss_pred             ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence            57899999986432 2469999999999999999999999999999999999997 3    5799999999999999875


Q ss_pred             h----hcceEEEecCCCC-Cc-c-cHHHHH----hcCCCCCCH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCC
Q 048556          335 I----RGKIGLVSQEPVL-FT-S-SIKDNI----NYGKDGASI----AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQ  399 (478)
Q Consensus       335 ~----r~~i~~v~Q~~~l-f~-~-ti~eNl----~~~~~~~~~----~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~  399 (478)
                      +    .+.|++|||+|.- |+ - ||.+-+    .......+.    ++..+.++.+++.+        -+..+...+.+
T Consensus        82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~--------~~~~~~~YPhe  153 (316)
T COG0444          82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPD--------PERRLKSYPHE  153 (316)
T ss_pred             HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCC--------HHHHHhhCCcc
Confidence            3    3469999999852 32 1 454444    321111011    12333333333321        12355677899


Q ss_pred             CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEe
Q 048556          400 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLV  476 (478)
Q Consensus       400 LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~  476 (478)
                      ||||||||+.||.|++.+|+++|.||||+|||..++++|++.|+++.+  +.++|+|||++..+.. ||||+||..|+||
T Consensus       154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV  233 (316)
T COG0444         154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV  233 (316)
T ss_pred             cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence            999999999999999999999999999999999999999999998864  7899999999998776 9999999999999


Q ss_pred             eC
Q 048556          477 EK  478 (478)
Q Consensus       477 ~~  478 (478)
                      |.
T Consensus       234 E~  235 (316)
T COG0444         234 EE  235 (316)
T ss_pred             Ee
Confidence            84

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=9.9e-41  Score=356.20  Aligned_cols=216  Identities=24%  Similarity=0.346  Sum_probs=173.8

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-CccEEEECCeecCCCCH-HHhhc
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVLIDGVNLKEFQL-KWIRG  337 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-~~G~i~~~g~~~~~~~~-~~~r~  337 (478)
                      -++++|+++.|++..+.++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+. ..+|+
T Consensus       257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~  336 (500)
T TIGR02633       257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA  336 (500)
T ss_pred             eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence            48999999999421124699999999999999999999999999999999999995 89999999999865443 45678


Q ss_pred             ceEEEecCC---CCCcc-cHHHHHhcCCCC-CCH-HHHHHHHHHhcHHHHHHhCCCCccc-cccCCCCCCChHHHHHHHH
Q 048556          338 KIGLVSQEP---VLFTS-SIKDNINYGKDG-ASI-AEIMAAAELANAAKFIDSLPQGLDT-MVGEHGTQLSGGQKQRIAI  410 (478)
Q Consensus       338 ~i~~v~Q~~---~lf~~-ti~eNl~~~~~~-~~~-~~~~~a~~~~~~~~~i~~lp~g~~t-~~~~~g~~LSgGq~Qrl~l  410 (478)
                      .++|+||++   .+|+. |+++|+.++... ... ..+........+.++++.+  |+.. ........||||||||++|
T Consensus       337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~l  414 (500)
T TIGR02633       337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRL--KVKTASPFLPIGRLSGGNQQKAVL  414 (500)
T ss_pred             CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhc--CccCCCccCccccCCHHHHHHHHH
Confidence            899999996   47765 999999875311 000 0000011112234556655  5542 3566778999999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          411 ARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       411 ARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |||++.+|++|||||||++||+.+.+.+++.|+++. ++.|+|++||+++.+.. ||++++|++|+++.
T Consensus       415 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~  483 (500)
T TIGR02633       415 AKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKG  483 (500)
T ss_pred             HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999999999998875 46899999999998876 99999999999864

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.6e-41  Score=364.87  Aligned_cols=211  Identities=28%  Similarity=0.442  Sum_probs=171.5

Q ss_pred             cEEEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecC----------
Q 048556          260 DIELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLK----------  328 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~----------  328 (478)
                      -|+++|++++|++.. ..++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.          
T Consensus        12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~   91 (623)
T PRK10261         12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS   91 (623)
T ss_pred             eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence            589999999996321 247999999999999999999999999999999999999999999999997542          


Q ss_pred             CCCHH---Hhh-cceEEEecCC--CCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCcc---ccccC
Q 048556          329 EFQLK---WIR-GKIGLVSQEP--VLFTS-SIKDNINYGKD---GASIAEIMAAAELANAAKFIDSLPQGLD---TMVGE  395 (478)
Q Consensus       329 ~~~~~---~~r-~~i~~v~Q~~--~lf~~-ti~eNl~~~~~---~~~~~~~~~a~~~~~~~~~i~~lp~g~~---t~~~~  395 (478)
                      ..+..   .+| +.|+||+|+|  .+++. |++||+.++..   ..+..+..     ..+.+.++.+  |+.   .....
T Consensus        92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~~  164 (623)
T PRK10261         92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAM-----VEAKRMLDQV--RIPEAQTILSR  164 (623)
T ss_pred             cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHC--CCCChhhHHhC
Confidence            22322   233 5799999998  57765 99999987521   11222211     1123444444  552   34567


Q ss_pred             CCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEecCchhhhh-cCEEEEEeC
Q 048556          396 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-I-NRTTVIVAHRLSTVRN-ADLIAVIHQ  472 (478)
Q Consensus       396 ~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~vl~~  472 (478)
                      ...+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++. + ++|+|+|||+++.+.. ||||++|++
T Consensus       165 ~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~  244 (623)
T PRK10261        165 YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQ  244 (623)
T ss_pred             CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeC
Confidence            788999999999999999999999999999999999999999999999875 3 6899999999998866 999999999


Q ss_pred             CEEee
Q 048556          473 GKLVE  477 (478)
Q Consensus       473 G~i~~  477 (478)
                      |++++
T Consensus       245 G~i~~  249 (623)
T PRK10261        245 GEAVE  249 (623)
T ss_pred             Ceecc
Confidence            99975

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=100.00  E-value=1.6e-40  Score=335.88  Aligned_cols=213  Identities=29%  Similarity=0.471  Sum_probs=183.9

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH-HHhhcc
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL-KWIRGK  338 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~  338 (478)
                      .++++|+++.|++   ..+++|+||++++||+.|+.|+||+|||||+++|.|+|+|++|+|.+||+++.--++ +..|.-
T Consensus         4 ~l~~~~itK~f~~---~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G   80 (501)
T COG3845           4 ALEMRGITKRFPG---VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG   80 (501)
T ss_pred             eEEEeccEEEcCC---EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence            4899999999973   579999999999999999999999999999999999999999999999999987665 456777


Q ss_pred             eEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556          339 IGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD  417 (478)
Q Consensus       339 i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~  417 (478)
                      ||+|.|++.|++. |+.|||.+|.+....-.+........+++..+++  |++-...+....||-||+||+.|-+||+++
T Consensus        81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlKaLyr~  158 (501)
T COG3845          81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERY--GLPVDPDAKVADLSVGEQQRVEILKALYRG  158 (501)
T ss_pred             CcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHh--CCCCCccceeecCCcchhHHHHHHHHHhcC
Confidence            9999999999987 9999999998643111111112222334445554  777777788899999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          418 PRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       418 ~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |++||||||||-|-|...+++++.++++. +++|||+|||++.+++. |||+-||.+|+++.
T Consensus       159 a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg  220 (501)
T COG3845         159 ARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG  220 (501)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe
Confidence            99999999999999999999999999986 58999999999999888 99999999999864

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-40  Score=354.55  Aligned_cols=211  Identities=19%  Similarity=0.344  Sum_probs=172.7

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH-HHhhcc
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL-KWIRGK  338 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~  338 (478)
                      -++++|+++.|.     .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. +.+++.
T Consensus       265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~  339 (510)
T PRK09700        265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG  339 (510)
T ss_pred             EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence            499999998762     38999999999999999999999999999999999999999999999999866543 456778


Q ss_pred             eEEEecCC---CCCcc-cHHHHHhcCCCCC--CHH---HH-HHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHH
Q 048556          339 IGLVSQEP---VLFTS-SIKDNINYGKDGA--SIA---EI-MAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQKQR  407 (478)
Q Consensus       339 i~~v~Q~~---~lf~~-ti~eNl~~~~~~~--~~~---~~-~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~Qr  407 (478)
                      ++|+||++   .+|+. |++||+.++....  ...   .. ........+.++++.+  |+. ........+||||||||
T Consensus       340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~qr  417 (510)
T PRK09700        340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELL--ALKCHSVNQNITELSGGNQQK  417 (510)
T ss_pred             cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhc--CCCCCCccCccccCChHHHHH
Confidence            99999984   57775 9999998763210  000   00 0001112234556665  664 45667788999999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          408 IAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       408 l~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||++++|++|++++
T Consensus       418 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~  489 (510)
T PRK09700        418 VLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ  489 (510)
T ss_pred             HHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence            999999999999999999999999999999999998874 47899999999998765 99999999999864

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.3e-40  Score=301.27  Aligned_cols=203  Identities=27%  Similarity=0.464  Sum_probs=175.2

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      |+.+|+|++-.+   +.+|+++||++++||.+||+||||||||||+|.|+|...|++|++.+||.++.+++..++-++-+
T Consensus         2 i~a~nls~~~~G---r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra   78 (259)
T COG4559           2 IRAENLSYSLAG---RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA   78 (259)
T ss_pred             eeeeeeEEEeec---ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence            688999998864   57999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCC-CcccHHHHHhcCC-CCC---C--HHH--HHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 048556          341 LVSQEPVL-FTSSIKDNINYGK-DGA---S--IAE--IMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIA  411 (478)
Q Consensus       341 ~v~Q~~~l-f~~ti~eNl~~~~-~~~---~--~~~--~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lA  411 (478)
                      +.||+..+ |+-|++|-+.+|. |.-   .  +++  ..+++..+++..+           -+..-..|||||+||+.+|
T Consensus        79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~l-----------a~R~y~~LSGGEqQRVqlA  147 (259)
T COG4559          79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGL-----------AGRDYRTLSGGEQQRVQLA  147 (259)
T ss_pred             hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhh-----------hccchhhcCchHHHHHHHH
Confidence            99999987 8999999999996 321   1  222  3444555544332           2344578999999999999


Q ss_pred             HHHcCC------CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEee
Q 048556          412 RAILKD------PRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVR-NADLIAVIHQGKLVE  477 (478)
Q Consensus       412 Rall~~------~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~  477 (478)
                      |.|..-      +++|+||||||+||...+..+++..+++. ++..|+.|=|+++... +||||++|.+||++.
T Consensus       148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a  221 (259)
T COG4559         148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIA  221 (259)
T ss_pred             HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEee
Confidence            999763      35899999999999999999999999986 5789999999999765 599999999999975

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=100.00  E-value=2.2e-40  Score=362.44  Aligned_cols=211  Identities=33%  Similarity=0.504  Sum_probs=182.9

Q ss_pred             cEEEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh---
Q 048556          260 DIELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI---  335 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~---  335 (478)
                      -++++|+++.|++.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+.+++   
T Consensus         4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~   83 (648)
T PRK10535          4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL   83 (648)
T ss_pred             EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence            389999999996421 2469999999999999999999999999999999999999999999999999998887654   


Q ss_pred             -hcceEEEecCCCCCcc-cHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 048556          336 -RGKIGLVSQEPVLFTS-SIKDNINYGKDGA--SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIA  411 (478)
Q Consensus       336 -r~~i~~v~Q~~~lf~~-ti~eNl~~~~~~~--~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lA  411 (478)
                       ++.++|++|++.+|++ |+.||+.++....  ..++     ....+.++++.+  |++..+...+.+|||||+||++||
T Consensus        84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~-----~~~~~~~~l~~l--gl~~~~~~~~~~LS~Gq~qrv~LA  156 (648)
T PRK10535         84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQ-----RLLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIA  156 (648)
T ss_pred             HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHH-----HHHHHHHHHHHC--CChhhhcCCcccCCHHHHHHHHHH
Confidence             5789999999999975 9999998743111  1111     122345566666  777778888899999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          412 RAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      |||+++|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.++.||++++|++|++++
T Consensus       157 raL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~  223 (648)
T PRK10535        157 RALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVR  223 (648)
T ss_pred             HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEe
Confidence            99999999999999999999999999999998875 4789999999999998899999999999986

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.3e-40  Score=298.88  Aligned_cols=206  Identities=30%  Similarity=0.508  Sum_probs=170.4

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      +.+++++.+|++.+ .++|+|+|++|++||.++++||||||||||+|+++|+.+|..|+|.+||.+++.-.     ..-|
T Consensus         4 l~~~~~sl~y~g~~-~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPg-----aerg   77 (259)
T COG4525           4 LNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG-----AERG   77 (259)
T ss_pred             eehhheEEecCCcc-hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCC-----ccce
Confidence            56788999998653 56999999999999999999999999999999999999999999999999987654     2348


Q ss_pred             EEecCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCC
Q 048556          341 LVSQEPVLFT-SSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR  419 (478)
Q Consensus       341 ~v~Q~~~lf~-~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~  419 (478)
                      +|+|++-|++ -|+.||+.||-.-...++   +.+....++.+...  |+...-.....+||||||||+.|||||.-+|+
T Consensus        78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k---~~R~~~a~q~l~~V--gL~~~~~~~i~qLSGGmrQRvGiARALa~eP~  152 (259)
T COG4525          78 VVFQNEALLPWLNVIDNVAFGLQLRGIEK---AQRREIAHQMLALV--GLEGAEHKYIWQLSGGMRQRVGIARALAVEPQ  152 (259)
T ss_pred             eEeccCccchhhHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHHh--CcccccccceEeecchHHHHHHHHHHhhcCcc
Confidence            9999999998 499999999864332222   22222223333322  55444456678999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeC--CEEee
Q 048556          420 ILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQ--GKLVE  477 (478)
Q Consensus       420 ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~--G~i~~  477 (478)
                      .|+||||+++||.-|++++.+.|..++  .++.+++|||+.++.-. +++++||.-  |+|++
T Consensus       153 ~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~  215 (259)
T COG4525         153 LLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVE  215 (259)
T ss_pred             eEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeE
Confidence            999999999999999999999998775  37899999999998665 999999965  78876

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=1.6e-40  Score=311.68  Aligned_cols=189  Identities=20%  Similarity=0.368  Sum_probs=157.3

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++|++++|++   +.++ ++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+    ++.++
T Consensus         2 l~~~~l~~~~~~---~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~   73 (195)
T PRK13541          2 LSLHQLQFNIEQ---KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCT   73 (195)
T ss_pred             eEEEEeeEEECC---cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEE
Confidence            689999999953   3455 599999999999999999999999999999999999999999999886543    35699


Q ss_pred             EEecCCCC-CcccHHHHHhcCCCCC-CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCC
Q 048556          341 LVSQEPVL-FTSSIKDNINYGKDGA-SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDP  418 (478)
Q Consensus       341 ~v~Q~~~l-f~~ti~eNl~~~~~~~-~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~  418 (478)
                      |++|++.+ +..|++||+.++.+.. ..+++.++++..+           ++......+.+||||||||++||||++++|
T Consensus        74 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~~rl~la~al~~~p  142 (195)
T PRK13541         74 YIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFK-----------LHDLLDEKCYSLSSGMQKIVAIARLIACQS  142 (195)
T ss_pred             eccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcC-----------CHhhhccChhhCCHHHHHHHHHHHHHhcCC
Confidence            99998765 5679999998764322 2233444444433           444455667899999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEecCchhhhhcCEEE
Q 048556          419 RILLLDEATSALDAESERVVQEALDKI-MINRTTVIVAHRLSTVRNADLIA  468 (478)
Q Consensus       419 ~ililDEpts~LD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~~~~d~i~  468 (478)
                      +++||||||++||+.+++.+.+.|+.. .+++|+|++||+++.++.+|.+.
T Consensus       143 ~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~  193 (195)
T PRK13541        143 DLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ  193 (195)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence            999999999999999999999999754 35789999999999999998763

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=1.9e-40  Score=355.64  Aligned_cols=211  Identities=27%  Similarity=0.435  Sum_probs=171.2

Q ss_pred             cEEEEeEEEECCC--CCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEEC-Cee---cCCCC--
Q 048556          260 DIELKDIYFSYPS--RPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID-GVN---LKEFQ--  331 (478)
Q Consensus       260 ~i~~~~v~~~y~~--~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~-g~~---~~~~~--  331 (478)
                      -++++|++++|++  ...+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |.+   +...+  
T Consensus       279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~  358 (520)
T TIGR03269       279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD  358 (520)
T ss_pred             eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence            4999999999953  112469999999999999999999999999999999999999999999996 643   33332  


Q ss_pred             -HHHhhcceEEEecCCCCCcc-cHHHHHhcCCC-CCCHHHHHHHHHHhcHHHHHHhCCCCccc-----cccCCCCCCChH
Q 048556          332 -LKWIRGKIGLVSQEPVLFTS-SIKDNINYGKD-GASIAEIMAAAELANAAKFIDSLPQGLDT-----MVGEHGTQLSGG  403 (478)
Q Consensus       332 -~~~~r~~i~~v~Q~~~lf~~-ti~eNl~~~~~-~~~~~~~~~a~~~~~~~~~i~~lp~g~~t-----~~~~~g~~LSgG  403 (478)
                       ...+++.++|+||++.+|+. |++||+.++.. ....++.     ...+.++++.+  |++.     .......+||||
T Consensus       359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~~~~~LSgG  431 (520)
T TIGR03269       359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELA-----RMKAVITLKMV--GFDEEKAEEILDKYPDELSEG  431 (520)
T ss_pred             hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHH-----HHHHHHHHHhC--CCCCccchhhhhCChhhCCHH
Confidence             23456789999999988875 99999986321 1111111     11233455554  5542     456778899999


Q ss_pred             HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          404 QKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       404 q~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+  +.|+|+|||+++.+.. ||++++|++|++++
T Consensus       432 q~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~  508 (520)
T TIGR03269       432 ERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVK  508 (520)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999988753  6899999999998876 99999999999875

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=2.3e-40  Score=343.33  Aligned_cols=210  Identities=28%  Similarity=0.480  Sum_probs=170.2

Q ss_pred             cEEEEeEEEECCCCCC-CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCC----ccEEEECCeecCCCCHHH
Q 048556          260 DIELKDIYFSYPSRPG-EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ----AGEVLIDGVNLKEFQLKW  334 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~-~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~----~G~i~~~g~~~~~~~~~~  334 (478)
                      -++++|++..|....+ .++++|+||++.+||++||||+|||||||+++.|+|+.++.    +|+|.++|.|+..++.++
T Consensus         5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~   84 (539)
T COG1123           5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE   84 (539)
T ss_pred             eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence            4899999999975422 25999999999999999999999999999999999999987    799999999998888765


Q ss_pred             hh----cceEEEecCCC-CCcc--cHHHHHh----cCCCCCCHH---HHHHHHHHhcHHHHHHhCCCCccccccCCCCCC
Q 048556          335 IR----GKIGLVSQEPV-LFTS--SIKDNIN----YGKDGASIA---EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQL  400 (478)
Q Consensus       335 ~r----~~i~~v~Q~~~-lf~~--ti~eNl~----~~~~~~~~~---~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~L  400 (478)
                      +|    +.|+||||+|. .++-  ||.+-|.    ...+...++   +..+.++.+       .+|+.-..  ...+.+|
T Consensus        85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~V-------gl~~~~~~--~~yPheL  155 (539)
T COG1123          85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQV-------GLPDPERR--DRYPHQL  155 (539)
T ss_pred             HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHc-------CCCChhhh--ccCCccc
Confidence            53    56999999985 4443  6665554    222111111   222222222       23332222  4588999


Q ss_pred             ChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          401 SGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       401 SgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |||||||+.||+||+.+|++||+||||.+||+.++++|++.|+++.  .+.++|+|||++..+.. ||||+||++|+++|
T Consensus       156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE  235 (539)
T COG1123         156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE  235 (539)
T ss_pred             CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999999986  47899999999999877 99999999999998


Q ss_pred             C
Q 048556          478 K  478 (478)
Q Consensus       478 ~  478 (478)
                      .
T Consensus       236 ~  236 (539)
T COG1123         236 T  236 (539)
T ss_pred             e
Confidence            4

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=2e-40  Score=355.41  Aligned_cols=207  Identities=26%  Similarity=0.502  Sum_probs=168.5

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccC--CCCccEEEEC---------------
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFY--DPQAGEVLID---------------  323 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~--~~~~G~i~~~---------------  323 (478)
                      |+++|++++|++   +++|+|+||++++||+++|+||||||||||+++|+|++  +|++|+|.++               
T Consensus         1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~   77 (520)
T TIGR03269         1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK   77 (520)
T ss_pred             CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence            478999999953   47999999999999999999999999999999999996  7999999997               


Q ss_pred             --------CeecC-------CCC---HHHhhcceEEEecC-CCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHH
Q 048556          324 --------GVNLK-------EFQ---LKWIRGKIGLVSQE-PVLFTS-SIKDNINYGKD--GASIAEIMAAAELANAAKF  381 (478)
Q Consensus       324 --------g~~~~-------~~~---~~~~r~~i~~v~Q~-~~lf~~-ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~  381 (478)
                              |.++.       ..+   ...+|+.++|+||+ +.+|+. |++||+.++..  ....++..     ..+.+.
T Consensus        78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~  152 (520)
T TIGR03269        78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAV-----GRAVDL  152 (520)
T ss_pred             cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHH
Confidence                    32221       111   13457789999998 577775 99999987421  11222211     123345


Q ss_pred             HHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCch
Q 048556          382 IDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLS  459 (478)
Q Consensus       382 i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~  459 (478)
                      ++.+  |++........+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.  .++|+|+|||+++
T Consensus       153 l~~~--gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~  230 (520)
T TIGR03269       153 IEMV--QLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE  230 (520)
T ss_pred             HHHc--CChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence            5555  66666667789999999999999999999999999999999999999999999998874  3689999999999


Q ss_pred             hhhh-cCEEEEEeCCEEee
Q 048556          460 TVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       460 ~~~~-~d~i~vl~~G~i~~  477 (478)
                      .+.. ||+|++|++|++++
T Consensus       231 ~~~~~~d~i~~l~~G~i~~  249 (520)
T TIGR03269       231 VIEDLSDKAIWLENGEIKE  249 (520)
T ss_pred             HHHHhcCEEEEEeCCEEee
Confidence            9876 99999999999864

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PLN03211 ABC transporter G-25; Provisional

Probab=100.00  E-value=4.5e-40  Score=358.95  Aligned_cols=193  Identities=26%  Similarity=0.446  Sum_probs=161.9

Q ss_pred             CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCC--ccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc-c
Q 048556          276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ--AGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-S  352 (478)
Q Consensus       276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~--~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-t  352 (478)
                      +++|+|+|+++++||++||+||||||||||+++|+|..+|+  +|+|.+||+++..    +.+++++||+|++.+|+. |
T Consensus        81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~~i~yv~Q~~~l~~~lT  156 (659)
T PLN03211         81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILKRTGFVTQDDILYPHLT  156 (659)
T ss_pred             CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----hhccceEEECcccccCCcCC
Confidence            46999999999999999999999999999999999999885  8999999998742    346679999999999975 9


Q ss_pred             HHHHHhcCC----C-CCCHHHHHHHHHHhcHHHHHHhC--CCCccccccC-CCCCCChHHHHHHHHHHHHcCCCCEEEEe
Q 048556          353 IKDNINYGK----D-GASIAEIMAAAELANAAKFIDSL--PQGLDTMVGE-HGTQLSGGQKQRIAIARAILKDPRILLLD  424 (478)
Q Consensus       353 i~eNl~~~~----~-~~~~~~~~~a~~~~~~~~~i~~l--p~g~~t~~~~-~g~~LSgGq~Qrl~lARall~~~~ililD  424 (478)
                      ++||+.++.    + ..+.++..+.     +++.++.+  ++..||.+|+ ....||||||||++|||||+.+|++++||
T Consensus       157 V~E~l~~~a~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLD  231 (659)
T PLN03211        157 VRETLVFCSLLRLPKSLTKQEKILV-----AESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD  231 (659)
T ss_pred             HHHHHHHHHHhCCCCCCCHHHHHHH-----HHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEe
Confidence            999998753    2 2233332221     23444443  3344788875 47889999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchh--hhhcCEEEEEeCCEEee
Q 048556          425 EATSALDAESERVVQEALDKIM-INRTTVIVAHRLST--VRNADLIAVIHQGKLVE  477 (478)
Q Consensus       425 Epts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~i~vl~~G~i~~  477 (478)
                      |||++||+.++..+.+.|+++. +++|+|+++|+++.  .+.+|++++|++|+++.
T Consensus       232 EPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~  287 (659)
T PLN03211        232 EPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLF  287 (659)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEE
Confidence            9999999999999999999876 57999999999984  45699999999999874

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=9.5e-40  Score=382.84  Aligned_cols=210  Identities=26%  Similarity=0.483  Sum_probs=181.5

Q ss_pred             ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556          259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK  338 (478)
Q Consensus       259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~  338 (478)
                      ..|+++|+++.|++. ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +...+|+.
T Consensus       927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257       927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred             ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence            469999999999632 3579999999999999999999999999999999999999999999999999865 45667889


Q ss_pred             eEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556          339 IGLVSQEPVLFTS-SIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL  415 (478)
Q Consensus       339 i~~v~Q~~~lf~~-ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall  415 (478)
                      ++|+||++.+|+. |++||+.++..  ..+.++..+     .+.+.++.+  |++........+||||||||++|||||+
T Consensus      1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~-----~v~~lL~~v--gL~~~~~~~~~~LSGGqKQRLsLArALi 1077 (2272)
T TIGR01257      1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQL-----EMEAMLEDT--GLHHKRNEEAQDLSGGMQRKLSVAIAFV 1077 (2272)
T ss_pred             EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence            9999999999976 99999987531  112222211     234455555  6777777888999999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          416 KDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      .+|+++||||||++||+.+++.+++.|++..+++|+|++||+++.+.. ||||++|++|+++.
T Consensus      1078 ~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~ 1140 (2272)
T TIGR01257      1078 GDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYC 1140 (2272)
T ss_pred             cCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999999998778999999999999876 99999999999864

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=6.6e-38  Score=367.40  Aligned_cols=209  Identities=20%  Similarity=0.359  Sum_probs=177.5

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      -|+++|+++.|+++ .+++++|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|.++.. +....|+.|
T Consensus      1937 ~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~I 2014 (2272)
T TIGR01257      1937 ILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014 (2272)
T ss_pred             eEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhE
Confidence            59999999999642 2579999999999999999999999999999999999999999999999999865 345678889


Q ss_pred             EEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556          340 GLVSQEPVLFTS-SIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK  416 (478)
Q Consensus       340 ~~v~Q~~~lf~~-ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~  416 (478)
                      ||+||++.+++. |++||+.+...  ....+++.+.     +.+.++.+  |++........+||||||||++|||||+.
T Consensus      2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~-----v~~lLe~l--gL~~~~dk~~~~LSGGqKqRLslA~ALi~ 2087 (2272)
T TIGR01257      2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKV-----ANWSIQSL--GLSLYADRLAGTYSGGNKRKLSTAIALIG 2087 (2272)
T ss_pred             EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCHHHhcCChhhCCHHHHHHHHHHHHHhc
Confidence            999999999875 99999986421  1222222211     22344444  56666667788999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +|++++|||||+|||+.+++.+++.|+++. +++|+|++||+++.++. ||||++|++|+++.
T Consensus      2088 ~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~ 2150 (2272)
T TIGR01257      2088 CPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQC 2150 (2272)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999998874 57899999999999887 99999999999864

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=1.1e-39  Score=348.11  Aligned_cols=203  Identities=21%  Similarity=0.378  Sum_probs=170.3

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH-HHhhcc
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL-KWIRGK  338 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~  338 (478)
                      -++++|+++        ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. +.+|+.
T Consensus       257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~  328 (501)
T PRK10762        257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG  328 (501)
T ss_pred             EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence            488999974        36999999999999999999999999999999999999999999999999877654 346778


Q ss_pred             eEEEecCC---CCCc-ccHHHHHhcCCCC--------CCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHH
Q 048556          339 IGLVSQEP---VLFT-SSIKDNINYGKDG--------ASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQK  405 (478)
Q Consensus       339 i~~v~Q~~---~lf~-~ti~eNl~~~~~~--------~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~  405 (478)
                      ++|+||++   .+|. .|++||+.++...        .+.++     ....+.++++.+  |+. ........+||||||
T Consensus       329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGek  401 (501)
T PRK10762        329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHAD-----EQQAVSDFIRLF--NIKTPSMEQAIGLLSGGNQ  401 (501)
T ss_pred             CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHH-----HHHHHHHHHHhc--CCCCCCccCchhhCCHHHH
Confidence            99999997   4665 4999999875311        01111     112234566665  563 456777889999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|+++.
T Consensus       402 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~  475 (501)
T PRK10762        402 QKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISG  475 (501)
T ss_pred             HHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999875 47899999999998866 99999999999864

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=100.00  E-value=1e-39  Score=312.59  Aligned_cols=177  Identities=28%  Similarity=0.478  Sum_probs=147.5

Q ss_pred             eeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCC---CcccHHHHHhcC
Q 048556          284 LSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVL---FTSSIKDNINYG  360 (478)
Q Consensus       284 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l---f~~ti~eNl~~~  360 (478)
                      |+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.     ..++.++|+||++.+   |+.|++||+.++
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~   75 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG   75 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence            578999999999999999999999999999999999999998763     246789999999876   456999999875


Q ss_pred             CCC-------CC---HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Q 048556          361 KDG-------AS---IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL  430 (478)
Q Consensus       361 ~~~-------~~---~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~L  430 (478)
                      ...       ..   .+++.++++..           |++........+||||||||++||||++++|+++||||||++|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~L  144 (223)
T TIGR03771        76 RTGHIGWLRRPCVADFAAVRDALRRV-----------GLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGL  144 (223)
T ss_pred             cccccccccCCcHHHHHHHHHHHHHh-----------CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence            310       01   12233333333           4444445566789999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          431 DAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       431 D~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |+.+++.+.+.|+++. +++|+|++||+++.+.. ||+++++ +|++++
T Consensus       145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~  192 (223)
T TIGR03771       145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIA  192 (223)
T ss_pred             CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEe
Confidence            9999999999999875 47899999999998765 9999999 799874

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=100.00  E-value=4.9e-40  Score=358.14  Aligned_cols=200  Identities=23%  Similarity=0.372  Sum_probs=166.5

Q ss_pred             CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCC---ccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc
Q 048556          275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS  351 (478)
Q Consensus       275 ~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~  351 (478)
                      ++++|+|+|+++++||.++|+||||||||||+++|+|..+|.   +|+|.+||.++.   ...+++.++||+|++.+++.
T Consensus        37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~~~~~~  113 (617)
T TIGR00955        37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDLFIPT  113 (617)
T ss_pred             ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccccccCcc
Confidence            467999999999999999999999999999999999999885   799999999875   35678899999999999965


Q ss_pred             -cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHh--CCCCccccccCC--CCCCChHHHHHHHHHHHHcCCCCEEEEeCC
Q 048556          352 -SIKDNINYGKDGASIAEIMAAAELANAAKFIDS--LPQGLDTMVGEH--GTQLSGGQKQRIAIARAILKDPRILLLDEA  426 (478)
Q Consensus       352 -ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~--lp~g~~t~~~~~--g~~LSgGq~Qrl~lARall~~~~ililDEp  426 (478)
                       |++||+.++.....+.++.+..+...+++.++.  +++..||.+|+.  +..||||||||++|||||+.+|++++||||
T Consensus       114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEP  193 (617)
T TIGR00955       114 LTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEP  193 (617)
T ss_pred             CcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCC
Confidence             999999876421111000011122234455554  445679999984  478999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCch-h-hhhcCEEEEEeCCEEee
Q 048556          427 TSALDAESERVVQEALDKIM-INRTTVIVAHRLS-T-VRNADLIAVIHQGKLVE  477 (478)
Q Consensus       427 ts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~-~-~~~~d~i~vl~~G~i~~  477 (478)
                      ||+||+.+...+++.++++. +++|+|+++|+++ . .+.+|++++|++|+++.
T Consensus       194 tsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~  247 (617)
T TIGR00955       194 TSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAY  247 (617)
T ss_pred             CcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEE
Confidence            99999999999999999886 4799999999996 3 56799999999999975

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=8e-40  Score=311.57  Aligned_cols=179  Identities=34%  Similarity=0.520  Sum_probs=153.7

Q ss_pred             cEEEEeEEEECCCCCC------CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHH
Q 048556          260 DIELKDIYFSYPSRPG------EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLK  333 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~------~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~  333 (478)
                      -++++|+++.|+....      ..+++||||+|++||+++|||+|||||||+.|+|+|+++|++|+|+++|.|+..++  
T Consensus         4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~--   81 (268)
T COG4608           4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS--   81 (268)
T ss_pred             eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence            3789999999964321      36899999999999999999999999999999999999999999999999987765  


Q ss_pred             HhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556          334 WIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA  413 (478)
Q Consensus       334 ~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa  413 (478)
                                                  .....+++.+.++.+++.+.          .......+|||||+||++||||
T Consensus        82 ----------------------------~~~~~~~v~elL~~Vgl~~~----------~~~ryPhelSGGQrQRi~IARA  123 (268)
T COG4608          82 ----------------------------KEERRERVLELLEKVGLPEE----------FLYRYPHELSGGQRQRIGIARA  123 (268)
T ss_pred             ----------------------------hhHHHHHHHHHHHHhCCCHH----------HhhcCCcccCchhhhhHHHHHH
Confidence                                        11223456666666654331          3345578999999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEeeC
Q 048556          414 ILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVEK  478 (478)
Q Consensus       414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~  478 (478)
                      |.-+|+++++|||||+||...+++|.+.+.++.+  +-|.++|||+++.+++ ||||.||..|+|||.
T Consensus       124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~  191 (268)
T COG4608         124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEI  191 (268)
T ss_pred             HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEe
Confidence            9999999999999999999999999999988753  6899999999999999 999999999999973

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=4.1e-39  Score=316.77  Aligned_cols=210  Identities=33%  Similarity=0.501  Sum_probs=175.0

Q ss_pred             CccEEEEeEEEECCCCCC--------CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCC
Q 048556          258 RGDIELKDIYFSYPSRPG--------EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE  329 (478)
Q Consensus       258 ~~~i~~~~v~~~y~~~~~--------~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~  329 (478)
                      +.-++.+|+...|+-+.+        ..+.+++||+.++||.+||||+||||||||-++|+++.+++ |+|.++|.++..
T Consensus       274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~  352 (534)
T COG4172         274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG  352 (534)
T ss_pred             CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence            345899999999874321        25799999999999999999999999999999999999886 999999999998


Q ss_pred             CCHHH---hhcceEEEecCCC--CCc-ccHHHHHhcC----CCCCCHH----HHHHHHHHhcHHHHHHhCCCCccccccC
Q 048556          330 FQLKW---IRGKIGLVSQEPV--LFT-SSIKDNINYG----KDGASIA----EIMAAAELANAAKFIDSLPQGLDTMVGE  395 (478)
Q Consensus       330 ~~~~~---~r~~i~~v~Q~~~--lf~-~ti~eNl~~~----~~~~~~~----~~~~a~~~~~~~~~i~~lp~g~~t~~~~  395 (478)
                      ++.++   +|+++-.|+|||+  |-+ .||.+-|.-|    .|..+..    ++.+|++.+|++.          .....
T Consensus       353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp----------~~r~R  422 (534)
T COG4172         353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDP----------ATRNR  422 (534)
T ss_pred             cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCCh----------hHhhc
Confidence            88766   4789999999997  333 3776666544    4454443    3444444444332          23356


Q ss_pred             CCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeC
Q 048556          396 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQ  472 (478)
Q Consensus       396 ~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~  472 (478)
                      .+.++|||||||||||||++-+|++++||||||+||..-+.+|.+.++++.  .+-+-++|||++..++. ||+++||.+
T Consensus       423 YPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~  502 (534)
T COG4172         423 YPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRD  502 (534)
T ss_pred             CCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeC
Confidence            789999999999999999999999999999999999999999999999874  46799999999999998 999999999


Q ss_pred             CEEeeC
Q 048556          473 GKLVEK  478 (478)
Q Consensus       473 G~i~~~  478 (478)
                      |+|||+
T Consensus       503 GkiVE~  508 (534)
T COG4172         503 GKIVEQ  508 (534)
T ss_pred             CEEeee
Confidence            999985

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=4.5e-39  Score=315.22  Aligned_cols=198  Identities=27%  Similarity=0.351  Sum_probs=160.5

Q ss_pred             cEEEEeEEEECCCC-----------------CCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556          260 DIELKDIYFSYPSR-----------------PGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI  322 (478)
Q Consensus       260 ~i~~~~v~~~y~~~-----------------~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~  322 (478)
                      +|+++||++.|...                 ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~   83 (264)
T PRK13546          4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR   83 (264)
T ss_pred             eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence            46777776666431                 1246899999999999999999999999999999999999999999999


Q ss_pred             CCeecCCCCHHHhhcceEEEecCCCCCc-ccHHHHHhcCC--CCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCC
Q 048556          323 DGVNLKEFQLKWIRGKIGLVSQEPVLFT-SSIKDNINYGK--DGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQ  399 (478)
Q Consensus       323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~eNl~~~~--~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~  399 (478)
                      +|.             +++++|++.+++ .|++||+.++.  ...+.++..+..     .+.++.+  |++..+.....+
T Consensus        84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~  143 (264)
T PRK13546         84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMT-----PKIIEFS--ELGEFIYQPVKK  143 (264)
T ss_pred             CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCchhhcCCccc
Confidence            984             456788877765 49999998642  122333333221     1222222  455566667889


Q ss_pred             CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          400 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       400 LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |||||+||++||||++.+|++|||||||++||+.+.+.+.+.|.++. .++|+|++||++..+.. ||+|++|++|++++
T Consensus       144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~  223 (264)
T PRK13546        144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKD  223 (264)
T ss_pred             CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999998864 47899999999998876 99999999999875

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=8.8e-39  Score=332.76  Aligned_cols=198  Identities=25%  Similarity=0.363  Sum_probs=160.6

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      -++++|++|.|++...+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+.            
T Consensus        21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------   88 (549)
T PRK13545         21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------   88 (549)
T ss_pred             eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence            48999999999754335799999999999999999999999999999999999999999999999751            


Q ss_pred             EEEecCCCCCc-ccHHHHHhcCC--CCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556          340 GLVSQEPVLFT-SSIKDNINYGK--DGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK  416 (478)
Q Consensus       340 ~~v~Q~~~lf~-~ti~eNl~~~~--~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~  416 (478)
                       ++++.+.+++ .|++||+.+..  ...+.++..+.     +.+.++.+  |++.........||||||||++|||||+.
T Consensus        89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~-----i~elLe~l--gL~~~ld~~~~~LSGGQrQRVaLArAL~~  160 (549)
T PRK13545         89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEI-----IPEIIEFA--DIGKFIYQPVKTYSSGMKSRLGFAISVHI  160 (549)
T ss_pred             -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHH-----HHHHHHHc--CChhHhhCCcccCCHHHHHHHHHHHHHHh
Confidence             1233344444 49999998743  22233333221     12233333  45555566778999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus       161 ~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~  223 (549)
T PRK13545        161 NPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKE  223 (549)
T ss_pred             CCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999998875 46899999999998866 99999999999874

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=100.00  E-value=3.5e-39  Score=287.89  Aligned_cols=143  Identities=38%  Similarity=0.601  Sum_probs=134.3

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++|+++.|++   .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.           +.++
T Consensus         1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~   66 (144)
T cd03221           1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIG   66 (144)
T ss_pred             CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEE
Confidence            478999999963   36999999999999999999999999999999999999999999999984           4799


Q ss_pred             EEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCE
Q 048556          341 LVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI  420 (478)
Q Consensus       341 ~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~i  420 (478)
                      |+||                                                       ||+||+||++||||++++|++
T Consensus        67 ~~~~-------------------------------------------------------lS~G~~~rv~laral~~~p~i   91 (144)
T cd03221          67 YFEQ-------------------------------------------------------LSGGEKMRLALAKLLLENPNL   91 (144)
T ss_pred             EEcc-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCE
Confidence            9999                                                       999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCE
Q 048556          421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGK  474 (478)
Q Consensus       421 lilDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~  474 (478)
                      +||||||++||+.+...+.+.++++  ++|+|++||+++.+.. ||++++|++|+
T Consensus        92 lllDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~  144 (144)
T cd03221          92 LLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK  144 (144)
T ss_pred             EEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence            9999999999999999999999886  4799999999999866 89999999996

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.2e-39  Score=342.88  Aligned_cols=209  Identities=26%  Similarity=0.374  Sum_probs=169.7

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC-HHHhhcc
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ-LKWIRGK  338 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~-~~~~r~~  338 (478)
                      .++++|+++.       .+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ .+..++.
T Consensus       257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~  329 (501)
T PRK11288        257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG  329 (501)
T ss_pred             EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence            4889999731       4899999999999999999999999999999999999999999999999886543 3445778


Q ss_pred             eEEEecCCC---CCc-ccHHHHHhcCCCCC-CHHH--HHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHH
Q 048556          339 IGLVSQEPV---LFT-SSIKDNINYGKDGA-SIAE--IMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQKQRIAI  410 (478)
Q Consensus       339 i~~v~Q~~~---lf~-~ti~eNl~~~~~~~-~~~~--~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~Qrl~l  410 (478)
                      ++|+||++.   +|+ .|+.||+.++.... ....  .........+.+++..+  |++ ........+||||||||++|
T Consensus       330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~qrl~l  407 (501)
T PRK11288        330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSL--NIKTPSREQLIMNLSGGNQQKAIL  407 (501)
T ss_pred             CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhc--CcccCCccCccccCCHHHHHHHHH
Confidence            999999973   665 59999998753211 0000  00000112234566665  563 34567788999999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          411 ARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       411 ARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |||++.+|++|||||||++||+.+.+.+++.|+++. .+.|+|++||+++.+.. ||++++|++|++++
T Consensus       408 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~  476 (501)
T PRK11288        408 GRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAG  476 (501)
T ss_pred             HHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEE
Confidence            999999999999999999999999999999998875 46899999999998866 99999999999864

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=1.2e-38  Score=343.78  Aligned_cols=199  Identities=29%  Similarity=0.423  Sum_probs=164.0

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      -++++|++++|++  ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++           +..|
T Consensus         4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i   70 (552)
T TIGR03719         4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV   70 (552)
T ss_pred             EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence            3889999999962  24799999999999999999999999999999999999999999999875           2469


Q ss_pred             EEEecCCCCCcc-cHHHHHhcCCCC-----------------CCH---------HHHHHHHHHhc-------HHHHHHhC
Q 048556          340 GLVSQEPVLFTS-SIKDNINYGKDG-----------------ASI---------AEIMAAAELAN-------AAKFIDSL  385 (478)
Q Consensus       340 ~~v~Q~~~lf~~-ti~eNl~~~~~~-----------------~~~---------~~~~~a~~~~~-------~~~~i~~l  385 (478)
                      +||||++.+|+. |++||+.++...                 ..+         +++.++++..+       +.+.++.+
T Consensus        71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  150 (552)
T TIGR03719        71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL  150 (552)
T ss_pred             EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence            999999999875 999999875310                 001         12333333333       22344444


Q ss_pred             CCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-c
Q 048556          386 PQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-A  464 (478)
Q Consensus       386 p~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~  464 (478)
                        |++. ......+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.  ++|+|+|||+++.+.. |
T Consensus       151 --~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~  225 (552)
T TIGR03719       151 --RCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVA  225 (552)
T ss_pred             --CCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence              4432 35667899999999999999999999999999999999999999999999876  3699999999999877 8


Q ss_pred             CEEEEEeCCEEe
Q 048556          465 DLIAVIHQGKLV  476 (478)
Q Consensus       465 d~i~vl~~G~i~  476 (478)
                      |++++|++|+++
T Consensus       226 d~v~~l~~g~i~  237 (552)
T TIGR03719       226 GWILELDRGRGI  237 (552)
T ss_pred             CeEEEEECCEEE
Confidence            999999999975

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=9.8e-39  Score=344.50  Aligned_cols=199  Identities=28%  Similarity=0.396  Sum_probs=163.5

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      -|+++|++++|++  ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++           +..+
T Consensus         6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i   72 (556)
T PRK11819          6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKV   72 (556)
T ss_pred             EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence            3899999999962  24799999999999999999999999999999999999999999999874           2469


Q ss_pred             EEEecCCCCCcc-cHHHHHhcCCCC----------------CCH----------HHHHHHHH-------HhcHHHHHHhC
Q 048556          340 GLVSQEPVLFTS-SIKDNINYGKDG----------------ASI----------AEIMAAAE-------LANAAKFIDSL  385 (478)
Q Consensus       340 ~~v~Q~~~lf~~-ti~eNl~~~~~~----------------~~~----------~~~~~a~~-------~~~~~~~i~~l  385 (478)
                      +||||++.+++. |++||+.++...                ...          .++.++++       ...+.+.++.+
T Consensus        73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  152 (556)
T PRK11819         73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL  152 (556)
T ss_pred             EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence            999999999876 999999875210                000          01111111       11233444544


Q ss_pred             CCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-c
Q 048556          386 PQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-A  464 (478)
Q Consensus       386 p~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~  464 (478)
                        |++ .......+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++..  .|+|+|||+++.+.. |
T Consensus       153 --gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~  227 (556)
T PRK11819        153 --RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVA  227 (556)
T ss_pred             --CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhc
Confidence              453 2456678999999999999999999999999999999999999999999998863  599999999999877 9


Q ss_pred             CEEEEEeCCEEe
Q 048556          465 DLIAVIHQGKLV  476 (478)
Q Consensus       465 d~i~vl~~G~i~  476 (478)
                      |+|++|++|+++
T Consensus       228 d~i~~l~~g~i~  239 (556)
T PRK11819        228 GWILELDRGRGI  239 (556)
T ss_pred             CeEEEEeCCEEE
Confidence            999999999975

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.7e-39  Score=288.08  Aligned_cols=208  Identities=32%  Similarity=0.548  Sum_probs=175.7

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCC----------
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE----------  329 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~----------  329 (478)
                      .++++|+.++|..   ..+|+++|++.++|+.+.|+|.|||||||+++.+.-+..|+.|+|.+||..+.-          
T Consensus         6 ~l~v~dlHK~~G~---~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~   82 (256)
T COG4598           6 ALEVEDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP   82 (256)
T ss_pred             ceehhHHHhhccc---chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence            5899999999964   469999999999999999999999999999999999999999999999987631          


Q ss_pred             CC---HHHhhcceEEEecCCCCCcc-cHHHHHhcCCC---CC-CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 048556          330 FQ---LKWIRGKIGLVSQEPVLFTS-SIKDNINYGKD---GA-SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLS  401 (478)
Q Consensus       330 ~~---~~~~r~~i~~v~Q~~~lf~~-ti~eNl~~~~~---~~-~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LS  401 (478)
                      .|   .+.+|.+.++|+|+..|.+. |+.||+.-+.-   .. ..+.+.+|      ..++.+.  |++......+..||
T Consensus        83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~A------e~~L~kV--Gi~ek~~~YP~~LS  154 (256)
T COG4598          83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERA------EKYLAKV--GIAEKADAYPAHLS  154 (256)
T ss_pred             CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHH------HHHHHHh--CchhhhhcCccccC
Confidence            22   34568889999999999986 99999864321   11 22333333      2333333  66666667789999


Q ss_pred             hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEeeC
Q 048556          402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVEK  478 (478)
Q Consensus       402 gGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~  478 (478)
                      |||.||.+|||||.-+|+++++|||||+|||+-.-++.+.++.+. +++|+++|||.+.+.++ +..++.+.+|.|-|+
T Consensus       155 GGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~  233 (256)
T COG4598         155 GGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEE  233 (256)
T ss_pred             chHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceeccc
Confidence            999999999999999999999999999999999999999999886 58999999999999999 799999999998663

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=100.00  E-value=4.9e-39  Score=313.27  Aligned_cols=199  Identities=23%  Similarity=0.354  Sum_probs=158.8

Q ss_pred             EeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEE-----------ECCeecCCCCH
Q 048556          264 KDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL-----------IDGVNLKEFQL  332 (478)
Q Consensus       264 ~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~-----------~~g~~~~~~~~  332 (478)
                      .||+|+|++  ..++|+|+| .+++||+++|+||||||||||+++|+|+++|++|+|.           ++|+++.++..
T Consensus         4 ~~~~~~y~~--~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~   80 (255)
T cd03236           4 DEPVHRYGP--NSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT   80 (255)
T ss_pred             cCcceeecC--cchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence            478899963  236999999 4999999999999999999999999999999999996           88988876543


Q ss_pred             HHhhc--ceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 048556          333 KWIRG--KIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAI  410 (478)
Q Consensus       333 ~~~r~--~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~l  410 (478)
                      +..+.  .++|++|.+.+++.++.+|+.........+        ....++++.+  |++..+.....+||||||||++|
T Consensus        81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~--------~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~l  150 (255)
T cd03236          81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDER--------GKLDELVDQL--ELRHVLDRNIDQLSGGELQRVAI  150 (255)
T ss_pred             HhhhcccceeeecchhccCchHHHHHHHHHhchhHHH--------HHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHH
Confidence            33332  478999988777656556555421111111        1123444444  66666777889999999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchhhhh-cCEEEEEeCCEEe
Q 048556          411 ARAILKDPRILLLDEATSALDAESERVVQEALDKIMI-NRTTVIVAHRLSTVRN-ADLIAVIHQGKLV  476 (478)
Q Consensus       411 ARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-~d~i~vl~~G~i~  476 (478)
                      |||++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|+ |++.
T Consensus       151 aral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~  217 (255)
T cd03236         151 AAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPG  217 (255)
T ss_pred             HHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCC
Confidence            9999999999999999999999999999999988754 6899999999999885 99999995 4443

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=100.00  E-value=6.5e-39  Score=311.08  Aligned_cols=182  Identities=23%  Similarity=0.405  Sum_probs=151.3

Q ss_pred             EECCCCCCCcccccceeeec-----CCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEE
Q 048556          268 FSYPSRPGEQIFNGFSLSIP-----SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLV  342 (478)
Q Consensus       268 ~~y~~~~~~~~l~~is~~i~-----~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v  342 (478)
                      |+|++  ..+.++|++|+++     +||+++|+||||||||||+++|+|+++|++|+|.++|.            .++|+
T Consensus         1 ~~y~~--~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~   66 (246)
T cd03237           1 YTYPT--MKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYK   66 (246)
T ss_pred             CCCcc--cccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEe
Confidence            56764  2458888888886     79999999999999999999999999999999999884            58999


Q ss_pred             ecCCCC-CcccHHHHHhcCCCCCC--HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCC
Q 048556          343 SQEPVL-FTSSIKDNINYGKDGAS--IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR  419 (478)
Q Consensus       343 ~Q~~~l-f~~ti~eNl~~~~~~~~--~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~  419 (478)
                      ||++.. +..|++||+.+......  .+..         .+.++.+  |++........+|||||+||++|||||+.+|+
T Consensus        67 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~---------~~~l~~l--~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~  135 (246)
T cd03237          67 PQYIKADYEGTVRDLLSSITKDFYTHPYFK---------TEIAKPL--QIEQILDREVPELSGGELQRVAIAACLSKDAD  135 (246)
T ss_pred             cccccCCCCCCHHHHHHHHhhhccccHHHH---------HHHHHHc--CCHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            999875 57899999976432211  1111         2233333  56656667788999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCE
Q 048556          420 ILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGK  474 (478)
Q Consensus       420 ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~  474 (478)
                      ++||||||++||+.++..+.+.|+++.+  ++|+|+|||+++.+.. ||++++|+++.
T Consensus       136 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~  193 (246)
T cd03237         136 IYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEP  193 (246)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCC
Confidence            9999999999999999999999998753  6899999999999886 99999997653

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-38  Score=341.48  Aligned_cols=198  Identities=25%  Similarity=0.435  Sum_probs=162.9

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      |+++|++|+|++   +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.           ..++
T Consensus         2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~   67 (530)
T PRK15064          2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG   67 (530)
T ss_pred             EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence            689999999963   47999999999999999999999999999999999999999999999872           3699


Q ss_pred             EEecCCCCCcc-cHHHHHhcCCCC----------------CCHH------HHHH-------HHHHhcHHHHHHhCCCCcc
Q 048556          341 LVSQEPVLFTS-SIKDNINYGKDG----------------ASIA------EIMA-------AAELANAAKFIDSLPQGLD  390 (478)
Q Consensus       341 ~v~Q~~~lf~~-ti~eNl~~~~~~----------------~~~~------~~~~-------a~~~~~~~~~i~~lp~g~~  390 (478)
                      |++|++.+|.. |++||+.++...                ...+      +..+       ......+.+.++.+  |++
T Consensus        68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~  145 (530)
T PRK15064         68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIP  145 (530)
T ss_pred             EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCC
Confidence            99999988876 999999875310                0000      0000       00112344556655  665


Q ss_pred             ccc-cCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEE
Q 048556          391 TMV-GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIA  468 (478)
Q Consensus       391 t~~-~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~  468 (478)
                      ... .....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++  .++|+|+|||+++.+.. ||+|+
T Consensus       146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~  223 (530)
T PRK15064        146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMA  223 (530)
T ss_pred             hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEE
Confidence            433 345789999999999999999999999999999999999999999999975  46899999999998876 99999


Q ss_pred             EEeCCEEe
Q 048556          469 VIHQGKLV  476 (478)
Q Consensus       469 vl~~G~i~  476 (478)
                      +|++|+++
T Consensus       224 ~l~~g~i~  231 (530)
T PRK15064        224 DLDYGELR  231 (530)
T ss_pred             EEeCCEEE
Confidence            99999984

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=8.4e-39  Score=341.76  Aligned_cols=203  Identities=19%  Similarity=0.358  Sum_probs=169.2

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHH-hhcc
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW-IRGK  338 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~  338 (478)
                      -++++|+++        .+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...+... .++.
T Consensus       268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~  339 (510)
T PRK15439        268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG  339 (510)
T ss_pred             eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence            489999983        1599999999999999999999999999999999999999999999999988766544 4567


Q ss_pred             eEEEecCC---CCCcc-cHHHHHhcCC----CCC-CHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHH
Q 048556          339 IGLVSQEP---VLFTS-SIKDNINYGK----DGA-SIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQKQRI  408 (478)
Q Consensus       339 i~~v~Q~~---~lf~~-ti~eNl~~~~----~~~-~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~Qrl  408 (478)
                      ++|+||++   .+|+. |+.+|+....    +.. ...+     ....+.+++..+  |+. .........||||||||+
T Consensus       340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrl  412 (510)
T PRK15439        340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAR-----ENAVLERYRRAL--NIKFNHAEQAARTLSGGNQQKV  412 (510)
T ss_pred             cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHH-----HHHHHHHHHHHc--CCCCCCccCccccCCcHHHHHH
Confidence            99999985   37765 9999986421    110 1111     112244566665  665 456777889999999999


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          409 AIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       409 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||++++|++|+++.
T Consensus       413 ~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~  483 (510)
T PRK15439        413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISG  483 (510)
T ss_pred             HHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999998875 47899999999999876 99999999999874

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=6.4e-39  Score=341.44  Aligned_cols=208  Identities=25%  Similarity=0.332  Sum_probs=167.0

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-CccEEEECCeecCC-CCHHHhhc
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVLIDGVNLKE-FQLKWIRG  337 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-~~G~i~~~g~~~~~-~~~~~~r~  337 (478)
                      -++++|+++.|++   +++|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.. .+....|+
T Consensus       260 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~  336 (490)
T PRK10938        260 RIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK  336 (490)
T ss_pred             eEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence            5999999999963   3699999999999999999999999999999999998876 69999999987632 23344678


Q ss_pred             ceEEEecCCCCCc---ccHHHHHhcCCCC----C--CHHHHHHHHHHhcHHHHHHhCCCCccc-cccCCCCCCChHHHHH
Q 048556          338 KIGLVSQEPVLFT---SSIKDNINYGKDG----A--SIAEIMAAAELANAAKFIDSLPQGLDT-MVGEHGTQLSGGQKQR  407 (478)
Q Consensus       338 ~i~~v~Q~~~lf~---~ti~eNl~~~~~~----~--~~~~~~~a~~~~~~~~~i~~lp~g~~t-~~~~~g~~LSgGq~Qr  407 (478)
                      .++|++|++.++.   .|+++++..+...    .  ..++.     ...+.+.++.+  |++. .......+||||||||
T Consensus       337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~qr  409 (490)
T PRK10938        337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQ-----QKLAQQWLDIL--GIDKRTADAPFHSLSWGQQRL  409 (490)
T ss_pred             hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHH-----HHHHHHHHHHc--CCchhhccCchhhCCHHHHHH
Confidence            8999999987643   3677776543110    0  01111     11123445544  5655 5566778999999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-C-CeEEEEecCchhhhh--cCEEEEEeCCEEee
Q 048556          408 IAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI-N-RTTVIVAHRLSTVRN--ADLIAVIHQGKLVE  477 (478)
Q Consensus       408 l~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~-~t~i~itH~~~~~~~--~d~i~vl~~G~i~~  477 (478)
                      ++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ + .|+|+|||+++.+..  ||++++|++|++++
T Consensus       410 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~  483 (490)
T PRK10938        410 ALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYR  483 (490)
T ss_pred             HHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEE
Confidence            9999999999999999999999999999999999998753 3 469999999999864  79999999999875

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=100.00  E-value=8.7e-37  Score=312.11  Aligned_cols=420  Identities=15%  Similarity=0.167  Sum_probs=297.5

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           42 ERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLLTLVM-LSSIPAIVLTAGVMSTVITKLASRGQTAYSIAA  120 (478)
Q Consensus        42 ~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (478)
                      +|++.|++.....+......++.+++.++....-++....++..+. +..+.+-.++.+.+.+.+.+...++++..++..
T Consensus       186 QrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfR  265 (659)
T KOG0060|consen  186 QRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFR  265 (659)
T ss_pred             HHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchh
Confidence            6899999998888887777777777777666555554333344443 344444556667777788888888888888888


Q ss_pred             HHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCCC
Q 048556          121 AVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYSLAIWFGGKMI----LEKGYK  196 (478)
Q Consensus       121 ~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv----~~g~ls  196 (478)
                      -...+...+.+.|-.|+.++.+....+...++........-.+.-....+..++..++.++-+.+-+..+    ..+.+|
T Consensus       266 y~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s  345 (659)
T KOG0060|consen  266 YKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLS  345 (659)
T ss_pred             hheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcC
Confidence            8888888999999999999888776666655555433222222222222233333333332222111111    234566


Q ss_pred             HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcc-------------cC-------CCCCC
Q 048556          197 GGDVINVIFC----VMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPLID-------------AY-------DSNGV  252 (478)
Q Consensus       197 ~G~l~~~~~~----~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~-------------~~-------~~~~~  252 (478)
                      ...+...+..    ...+...+..+.-....+.+......|+.++.+.-.+..             .+       .++..
T Consensus       346 ~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~  425 (659)
T KOG0060|consen  346 PAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSG  425 (659)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCc
Confidence            6666554321    122223344444444455555666778877764211100             00       00000


Q ss_pred             ccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH
Q 048556          253 KLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL  332 (478)
Q Consensus       253 ~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~  332 (478)
                      ........|++++|++.=|++ +..+.+|+||+|+.|+.+.|.||||||||+|+|.+.|+++..+|++.--...-     
T Consensus       426 ~~~~~Dn~i~~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~-----  499 (659)
T KOG0060|consen  426 KAEPADNAIEFEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG-----  499 (659)
T ss_pred             ccccccceEEeeeeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC-----
Confidence            001112469999999998864 44577889999999999999999999999999999999999999997422110     


Q ss_pred             HHhhcceEEEecCCCCCcccHHHHHhcCC-------CCCCHHHHHHHHHHhcHHHHHHhCCCCcccccc-CCCCCCChHH
Q 048556          333 KWIRGKIGLVSQEPVLFTSSIKDNINYGK-------DGASIAEIMAAAELANAAKFIDSLPQGLDTMVG-EHGTQLSGGQ  404 (478)
Q Consensus       333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~-------~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~-~~g~~LSgGq  404 (478)
                         -+.+-|+||.|+.=.||+||-+.++.       ..++|+++.+.++.+++.+.++.. +|+|+.+. +-...||+||
T Consensus       500 ---~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~-ggld~~~~~dW~dvLS~GE  575 (659)
T KOG0060|consen  500 ---PKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLERE-GGLDQQVDWDWMDVLSPGE  575 (659)
T ss_pred             ---CCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHh-CCCCchhhccHHhhcCHHH
Confidence               14589999999988999999999972       346889999999999998877665 68887664 6788999999


Q ss_pred             HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCC
Q 048556          405 KQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQG  473 (478)
Q Consensus       405 ~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G  473 (478)
                      +||+|.||.++++|++-||||+|||+|.+.|..+.+.+++  .+.|.|-|+||-+.-+..|.++-|+.+
T Consensus       576 qQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~--~giT~iSVgHRkSL~kfHd~~L~~~g~  642 (659)
T KOG0060|consen  576 QQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE--MGITFISVGHRKSLWKFHDYVLRMDGR  642 (659)
T ss_pred             HHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH--cCCeEEEeccHHHHHhhhhEEEEecCC
Confidence            9999999999999999999999999999999999999887  478999999999999999999999764

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.9e-38  Score=337.78  Aligned_cols=206  Identities=19%  Similarity=0.328  Sum_probs=168.2

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHH-Hhhcc
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLK-WIRGK  338 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~-~~r~~  338 (478)
                      -|+++|+++.|     +++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...+.. .+++.
T Consensus       250 ~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~  324 (491)
T PRK10982        250 ILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG  324 (491)
T ss_pred             EEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence            48999999974     2599999999999999999999999999999999999999999999999999776643 34677


Q ss_pred             eEEEecCC---CCCcc-cHHHHHhc-----CCCC---CCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHH
Q 048556          339 IGLVSQEP---VLFTS-SIKDNINY-----GKDG---ASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQK  405 (478)
Q Consensus       339 i~~v~Q~~---~lf~~-ti~eNl~~-----~~~~---~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~  405 (478)
                      ++|+||++   .+|+. |+.+|..+     ..+.   .+..+.     ...+.++++.+  |+. ........+||||||
T Consensus       325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~  397 (491)
T PRK10982        325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRM-----KSDTQWVIDSM--RVKTPGHRTQIGSLSGGNQ  397 (491)
T ss_pred             CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHH-----HHHHHHHHHhc--CccCCCcccccccCCcHHH
Confidence            99999985   36764 77776322     1111   011111     12234455555  443 235777889999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||++||||++.+|++|||||||++||+.+.+.+++.|+++. +++|+|++||+++.+.. ||++++|++|+++.
T Consensus       398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~  471 (491)
T PRK10982        398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAG  471 (491)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999998875 47899999999998866 99999999999873

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=1.1e-38  Score=372.46  Aligned_cols=208  Identities=24%  Similarity=0.428  Sum_probs=172.5

Q ss_pred             EEEEeEEEECCCC-CCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC---CCccEEEECCeecCCCCHHHhh
Q 048556          261 IELKDIYFSYPSR-PGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD---PQAGEVLIDGVNLKEFQLKWIR  336 (478)
Q Consensus       261 i~~~~v~~~y~~~-~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~r  336 (478)
                      ++++||+++|+.+ .++++|+|+|+++++||++||+||||||||||+++|+|+.+   |++|+|.+||+++.    ..+|
T Consensus       760 l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~~  835 (1394)
T TIGR00956       760 FHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSFQ  835 (1394)
T ss_pred             EEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhhh
Confidence            7899999999522 13579999999999999999999999999999999999997   78899999999984    2478


Q ss_pred             cceEEEecCCCCC-cccHHHHHhcCC----C-CCCHHHHHHHHHHhcHHHHHH--hCCCCccccccCCCCCCChHHHHHH
Q 048556          337 GKIGLVSQEPVLF-TSSIKDNINYGK----D-GASIAEIMAAAELANAAKFID--SLPQGLDTMVGEHGTQLSGGQKQRI  408 (478)
Q Consensus       337 ~~i~~v~Q~~~lf-~~ti~eNl~~~~----~-~~~~~~~~~a~~~~~~~~~i~--~lp~g~~t~~~~~g~~LSgGq~Qrl  408 (478)
                      +.++||+|++.++ ..|++||+.++.    | ..++++.++.     +++.++  .+.+-.|+.+|+.+..||||||||+
T Consensus       836 ~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~-----v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl  910 (1394)
T TIGR00956       836 RSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEY-----VEEVIKLLEMESYADAVVGVPGEGLNVEQRKRL  910 (1394)
T ss_pred             cceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHH-----HHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHH
Confidence            8999999987655 469999999752    2 1233332211     122222  2333468899988889999999999


Q ss_pred             HHHHHHcCCCC-EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhh--hhcCEEEEEeCC-EEee
Q 048556          409 AIARAILKDPR-ILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTV--RNADLIAVIHQG-KLVE  477 (478)
Q Consensus       409 ~lARall~~~~-ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~--~~~d~i~vl~~G-~i~~  477 (478)
                      +|||||+.+|+ +|+||||||+||+.++..+++.|+++. +++|+|+++|+++..  +.+|++++|++| ++++
T Consensus       911 ~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~  984 (1394)
T TIGR00956       911 TIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVY  984 (1394)
T ss_pred             HHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEE
Confidence            99999999997 999999999999999999999999884 579999999999863  569999999997 9875

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=9.3e-39  Score=301.31  Aligned_cols=186  Identities=32%  Similarity=0.520  Sum_probs=161.8

Q ss_pred             cceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCC----CHHHhhcceEEEecCCCCCcc-cHHH
Q 048556          281 GFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEF----QLKWIRGKIGLVSQEPVLFTS-SIKD  355 (478)
Q Consensus       281 ~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~----~~~~~r~~i~~v~Q~~~lf~~-ti~e  355 (478)
                      +++|+.+.-.++||-|+||||||||+|+|+|+..|++|.|.+||.-+.+-    ...--+++||||+||..||+. |++-
T Consensus        16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg   95 (352)
T COG4148          16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG   95 (352)
T ss_pred             EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence            58888888789999999999999999999999999999999999877543    233347889999999999997 9999


Q ss_pred             HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHH
Q 048556          356 NINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE  435 (478)
Q Consensus       356 Nl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~  435 (478)
                      |++||....+.++..+.+..-           |+...+...+.+||||||||+||+|||+.+|++|++|||.|+||...+
T Consensus        96 NL~YG~~~~~~~~fd~iv~lL-----------GI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK  164 (352)
T COG4148          96 NLRYGMWKSMRAQFDQLVALL-----------GIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK  164 (352)
T ss_pred             chhhhhcccchHhHHHHHHHh-----------CcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence            999998766555665555444           555556666789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          436 RVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       436 ~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ++++-.|+++.+  +.-+++|||.+.++.. ||++++|++|++..
T Consensus       165 ~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A  209 (352)
T COG4148         165 REILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKA  209 (352)
T ss_pred             hHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEe
Confidence            999999999875  4679999999998766 99999999999853

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.8e-38  Score=337.68  Aligned_cols=190  Identities=23%  Similarity=0.401  Sum_probs=160.6

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      -++++|++++|++   +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.           +.+
T Consensus       319 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i  384 (530)
T PRK15064        319 ALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANI  384 (530)
T ss_pred             eEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEE
Confidence            5999999999963   46999999999999999999999999999999999999999999999872           479


Q ss_pred             EEEecCCC--CCc-ccHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHHHHHH
Q 048556          340 GLVSQEPV--LFT-SSIKDNINYGK-DGASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQKQRIAIARAI  414 (478)
Q Consensus       340 ~~v~Q~~~--lf~-~ti~eNl~~~~-~~~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~Qrl~lARal  414 (478)
                      +|+||++.  +++ .|+++|+.+.. +....+++.+         .+..+  |+. ........+||||||||++||||+
T Consensus       385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~---------~l~~~--~l~~~~~~~~~~~LSgGq~qrv~la~al  453 (530)
T PRK15064        385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRG---------TLGRL--LFSQDDIKKSVKVLSGGEKGRMLFGKLM  453 (530)
T ss_pred             EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHH---------HHHHc--CCChhHhcCcccccCHHHHHHHHHHHHH
Confidence            99999974  444 49999997532 1112223333         33333  442 345567889999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEe
Q 048556          415 LKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLV  476 (478)
Q Consensus       415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~  476 (478)
                      +.+|++|||||||++||+.+.+.+.+.|++.  +.|+|+|||+++.+.. ||++++|++|+++
T Consensus       454 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~  514 (530)
T PRK15064        454 MQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVV  514 (530)
T ss_pred             hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence            9999999999999999999999999999886  4599999999999876 9999999999986

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=4e-39  Score=298.74  Aligned_cols=203  Identities=25%  Similarity=0.499  Sum_probs=177.7

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      .+++++|+++|.+   ..+++|+||++++|++.+++|||||||||.+++|+|+++|++|+|.++|.+++..    .+++|
T Consensus         2 ~L~ie~vtK~Fg~---k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~----~~~rI   74 (300)
T COG4152           2 ALEIEGVTKSFGD---KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQE----IKNRI   74 (300)
T ss_pred             ceEEecchhccCc---eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhh----hhhhc
Confidence            3789999999963   5799999999999999999999999999999999999999999999999998653    47789


Q ss_pred             EEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556          340 GLVSQEPVLFTS-SIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK  416 (478)
Q Consensus       340 ~~v~Q~~~lf~~-ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~  416 (478)
                      ||+|.+..|++- |+.|-+.|...  .....|+.     ..+..|++++  ++-........+||.|..|+|.+--|+++
T Consensus        75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~-----~~~~~wLer~--~i~~~~~~kIk~LSKGnqQKIQfisaviH  147 (300)
T COG4152          75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQ-----KKLQAWLERL--EIVGKKTKKIKELSKGNQQKIQFISAVIH  147 (300)
T ss_pred             ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHH-----HHHHHHHHhc--cccccccchHHHhhhhhhHHHHHHHHHhc
Confidence            999999999976 99999998642  22333333     2345688877  34445566788999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEe
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLV  476 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~  476 (478)
                      +|+++|||||||||||.+.+.+.+.+.+++ ++.|||+.||+|+-++. ||+++.|++|+.|
T Consensus       148 ePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V  209 (300)
T COG4152         148 EPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTV  209 (300)
T ss_pred             CCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceE
Confidence            999999999999999999999999998886 58999999999999987 9999999999865

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.9e-38  Score=276.88  Aligned_cols=208  Identities=31%  Similarity=0.515  Sum_probs=171.3

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCee--cCCC----CHH
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVN--LKEF----QLK  333 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~--~~~~----~~~  333 (478)
                      +|+++|++|.|..   ..+|-||+|+.+.||.+.+.||||+|||||++.|.-+.-|.+|+..|-|..  .+..    ...
T Consensus         2 sirv~~in~~yg~---~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~   78 (242)
T COG4161           2 SIQLNGINCFYGA---HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR   78 (242)
T ss_pred             ceEEccccccccc---chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence            4899999999963   479999999999999999999999999999999999999999999997753  3332    245


Q ss_pred             HhhcceEEEecCCCCCcc-cHHHHHhcCCC---CCCHHH-HHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 048556          334 WIRGKIGLVSQEPVLFTS-SIKDNINYGKD---GASIAE-IMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRI  408 (478)
Q Consensus       334 ~~r~~i~~v~Q~~~lf~~-ti~eNl~~~~~---~~~~~~-~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl  408 (478)
                      ++|+.+|+|+|.-+|.+. |+-||+.-..-   ..++++ ..+|      .+.+..|  .+...-...+-.|||||.||+
T Consensus        79 ~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a------~ellkrl--rl~~~adr~plhlsggqqqrv  150 (242)
T COG4161          79 DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARA------EKLLKRL--RLKPYADRYPLHLSGGQQQRV  150 (242)
T ss_pred             HHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHH------HHHHHHh--ccccccccCceecccchhhhH
Confidence            689999999999999987 99999974321   112222 2222      2223332  233333445678999999999


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchhhhh-cCEEEEEeCCEEeeC
Q 048556          409 AIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI-NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVEK  478 (478)
Q Consensus       409 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~  478 (478)
                      ||||||+-+|++|++||||++|||+-..++.+.|+++.+ +.|-++|||..+..++ +.+++.|++|+|+|.
T Consensus       151 aiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~  222 (242)
T COG4161         151 AIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQ  222 (242)
T ss_pred             HHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEee
Confidence            999999999999999999999999999999999999875 7899999999999988 999999999999984

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=2.8e-38  Score=288.19  Aligned_cols=203  Identities=29%  Similarity=0.489  Sum_probs=176.6

Q ss_pred             CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCC--CCcc-
Q 048556          275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPV--LFTS-  351 (478)
Q Consensus       275 ~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~--lf~~-  351 (478)
                      ++++|+++|++|++|+++.|+|.||||||||++.++|-..|++|+|+|||.|++.++.......++-|+|+|-  .++. 
T Consensus        18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l   97 (263)
T COG1101          18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL   97 (263)
T ss_pred             HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence            3579999999999999999999999999999999999999999999999999999999998888999999995  5665 


Q ss_pred             cHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCC
Q 048556          352 SIKDNINYGKDG---ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS  428 (478)
Q Consensus       352 ti~eNl~~~~~~---~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts  428 (478)
                      ||.||+.++...   .....-...-......+.+..+|.|++..++.+..-|||||||-++|+.|.++.|++|+|||-|+
T Consensus        98 TieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTA  177 (263)
T COG1101          98 TIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTA  177 (263)
T ss_pred             cHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhh
Confidence            999999986421   11111112233444566788999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhc--CCCeEEEEecCchh-hhhcCEEEEEeCCEEee
Q 048556          429 ALDAESERVVQEALDKIM--INRTTVIVAHRLST-VRNADLIAVIHQGKLVE  477 (478)
Q Consensus       429 ~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~-~~~~d~i~vl~~G~i~~  477 (478)
                      ||||.+.+.+++.-.+.-  .+-|.++|||+++. +.+.+|.++|++|+||-
T Consensus       178 ALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~Ivl  229 (263)
T COG1101         178 ALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVL  229 (263)
T ss_pred             cCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEE
Confidence            999999999999877653  35799999999986 45589999999999974

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=100.00  E-value=3.6e-38  Score=317.94  Aligned_cols=175  Identities=34%  Similarity=0.543  Sum_probs=147.9

Q ss_pred             EEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHH
Q 048556          294 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYGKD--GASIAEIM  370 (478)
Q Consensus       294 ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNl~~~~~--~~~~~~~~  370 (478)
                      |+||||||||||+++|+|+++|++|+|.++|.++.+.+.  .++.++|++|++.+|+. |++||+.++..  ..+.++..
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~   78 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK   78 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence            689999999999999999999999999999999977654  36789999999999986 99999998642  12222221


Q ss_pred             HHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--C
Q 048556          371 AAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--N  448 (478)
Q Consensus       371 ~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~  448 (478)
                      +     .+.++++.+  |++........+||||||||++|||||+++|+++||||||++||+.+++.+.+.|+++.+  +
T Consensus        79 ~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g  151 (325)
T TIGR01187        79 P-----RVLEALRLV--QLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLG  151 (325)
T ss_pred             H-----HHHHHHHHc--CCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence            1     123444444  566666777889999999999999999999999999999999999999999999988753  6


Q ss_pred             CeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          449 RTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       449 ~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +|+|+|||+++.+.. ||+|++|++|++++
T Consensus       152 ~tiiivTHd~~e~~~~~d~i~vl~~G~i~~  181 (325)
T TIGR01187       152 ITFVFVTHDQEEAMTMSDRIAIMRKGKIAQ  181 (325)
T ss_pred             CEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            899999999998765 99999999999875

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=1.2e-37  Score=282.05  Aligned_cols=154  Identities=42%  Similarity=0.689  Sum_probs=144.5

Q ss_pred             EEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEE
Q 048556          263 LKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLV  342 (478)
Q Consensus       263 ~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v  342 (478)
                      ++|++|.|++   .++++++||+|++|++++|+||||||||||+++|+|+++|++|+|+++|.++.......+++.++|+
T Consensus         2 ~~~~~~~~~~---~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~   78 (157)
T cd00267           2 IENLSFRYGG---RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYV   78 (157)
T ss_pred             eEEEEEEeCC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEE
Confidence            6899999964   3699999999999999999999999999999999999999999999999999887777788899999


Q ss_pred             ecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEE
Q 048556          343 SQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILL  422 (478)
Q Consensus       343 ~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ili  422 (478)
                      +|                                                       |||||+||++||||++.+|++++
T Consensus        79 ~q-------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~i  103 (157)
T cd00267          79 PQ-------------------------------------------------------LSGGQRQRVALARALLLNPDLLL  103 (157)
T ss_pred             ee-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence            99                                                       99999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchhhhh-cCEEEEEeCCE
Q 048556          423 LDEATSALDAESERVVQEALDKIMI-NRTTVIVAHRLSTVRN-ADLIAVIHQGK  474 (478)
Q Consensus       423 lDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-~d~i~vl~~G~  474 (478)
                      |||||++||..++..+.+.+++..+ ++|++++||+++.+.. ||+++++++|+
T Consensus       104 lDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~  157 (157)
T cd00267         104 LDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK  157 (157)
T ss_pred             EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence            9999999999999999999988754 4899999999999988 69999999985

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=100.00  E-value=6.2e-38  Score=298.06  Aligned_cols=177  Identities=17%  Similarity=0.263  Sum_probs=143.1

Q ss_pred             ccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEE-ECCeecCCCCHHHhhcceEEEecCCCCCcc-cHHH
Q 048556          278 IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL-IDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKD  355 (478)
Q Consensus       278 ~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~-~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~e  355 (478)
                      +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++|..+             .+.+++.+|++ |++|
T Consensus         2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e   68 (213)
T PRK15177          2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE   68 (213)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence            68999999999999999999999999999999999999999997 777532             13456778886 9999


Q ss_pred             HHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 048556          356 NINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE  433 (478)
Q Consensus       356 Nl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~  433 (478)
                      |+.+...  ..+.++..+.+     .+ ...++..    .......||||||||++||||++++|+++||||||+++|+.
T Consensus        69 nl~~~~~~~~~~~~~~~~~~-----~~-~~~l~~~----~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~  138 (213)
T PRK15177         69 NARMMASLYGLDGDEFSHFC-----YQ-LTQLEQC----YTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA  138 (213)
T ss_pred             HHHHHHHHcCCCHHHHHHHH-----HH-HhChhHH----hhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence            9987432  22333332221     11 1223323    33445679999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          434 SERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       434 ~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +++.+.+.+.+..+++|+|++||+++.+.. ||++++|++|++++
T Consensus       139 ~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~  183 (213)
T PRK15177        139 TQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITM  183 (213)
T ss_pred             HHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEE
Confidence            999999988655556899999999999865 99999999999875

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.1e-38  Score=283.30  Aligned_cols=203  Identities=29%  Similarity=0.500  Sum_probs=177.4

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      |+++||+++|.+   +.+++|+|++|++|.+++|+||||+|||||+.+++++.++++|+|.++|.++..++.+++.+.++
T Consensus         2 I~i~nv~K~y~~---~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS   78 (252)
T COG4604           2 ITIENVSKSYGT---KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS   78 (252)
T ss_pred             eeehhhhHhhCC---EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence            678999999963   57999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCcc-cHHHHHhcCCCCCCH-------H-HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 048556          341 LVSQEPVLFTS-SIKDNINYGKDGASI-------A-EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIA  411 (478)
Q Consensus       341 ~v~Q~~~lf~~-ti~eNl~~~~~~~~~-------~-~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lA  411 (478)
                      .+-|+.++-.- ||+|=+.||+-.++.       . .+.+|++      ++     .+...-++.-.+||||||||.-+|
T Consensus        79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aie------yl-----~L~~l~dryLd~LSGGQrQRAfIA  147 (252)
T COG4604          79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIE------YL-----HLEDLSDRYLDELSGGQRQRAFIA  147 (252)
T ss_pred             HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHH------Hh-----cccchHHHhHHhcccchhhhhhhh
Confidence            99999998654 999999999733332       1 2233322      22     233333445578999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          412 RAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ..+..+.+.++||||-.+||-+....+++.|+++.+  +||+++|-|+.+++.. +|.|+-|++|+++.
T Consensus       148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~  216 (252)
T COG4604         148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVK  216 (252)
T ss_pred             eeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEe
Confidence            999999999999999999999999999999998864  7999999999999887 89999999999975

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=6.7e-37  Score=330.13  Aligned_cols=192  Identities=24%  Similarity=0.403  Sum_probs=160.1

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      -++++|++++|++   +++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.+++ +          ..|
T Consensus       322 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~i  387 (552)
T TIGR03719       322 VIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VKL  387 (552)
T ss_pred             EEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eEE
Confidence            4999999999963   4699999999999999999999999999999999999999999999854 2          159


Q ss_pred             EEEecCCC-CCcc-cHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCccc-cccCCCCCCChHHHHHHHHHHHH
Q 048556          340 GLVSQEPV-LFTS-SIKDNINYGKDGA--SIAEIMAAAELANAAKFIDSLPQGLDT-MVGEHGTQLSGGQKQRIAIARAI  414 (478)
Q Consensus       340 ~~v~Q~~~-lf~~-ti~eNl~~~~~~~--~~~~~~~a~~~~~~~~~i~~lp~g~~t-~~~~~g~~LSgGq~Qrl~lARal  414 (478)
                      +|+||++. +++. |++||+.++.+..  ...+. .      ..+.+..+  |+.. .......+||||||||++||||+
T Consensus       388 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~-~------~~~~l~~~--~l~~~~~~~~~~~LSgGe~qrv~la~al  458 (552)
T TIGR03719       388 AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREV-P------SRAYVGRF--NFKGSDQQKKVGQLSGGERNRVHLAKTL  458 (552)
T ss_pred             EEEeCCccccCCCCcHHHHHHhhccccccCcchH-H------HHHHHHhC--CCChhHhcCchhhCCHHHHHHHHHHHHH
Confidence            99999973 6654 9999999864311  11110 0      12344544  5543 34667789999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeC-CEEe
Q 048556          415 LKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQ-GKLV  476 (478)
Q Consensus       415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~-G~i~  476 (478)
                      +.+|++|||||||++||+.+.+.+.+.|+++.  .|+|+|||+++.+.. ||+|++|++ |+++
T Consensus       459 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~~~~~~~d~i~~l~~~~~~~  520 (552)
T TIGR03719       459 KSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRWFLDRIATHILAFEGDSHVE  520 (552)
T ss_pred             hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHhCCEEEEEECCCeEE
Confidence            99999999999999999999999999999863  489999999998876 999999987 5765

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=100.00  E-value=4.1e-37  Score=282.92  Aligned_cols=144  Identities=26%  Similarity=0.359  Sum_probs=130.7

Q ss_pred             EeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEe
Q 048556          264 KDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVS  343 (478)
Q Consensus       264 ~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~  343 (478)
                      .|+++.|++   .+++++ +|++++||+++|+||||||||||+++|+|+++|++|+|.++|.+            ++|++
T Consensus         4 ~~l~~~~~~---~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~   67 (177)
T cd03222           4 PDCVKRYGV---FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKP   67 (177)
T ss_pred             CCeEEEECC---EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEc
Confidence            588999953   468888 49999999999999999999999999999999999999999863            78898


Q ss_pred             cCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEE
Q 048556          344 QEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLL  423 (478)
Q Consensus       344 Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ilil  423 (478)
                      |++.                                                    ||||||||++||||++.+|++++|
T Consensus        68 q~~~----------------------------------------------------LSgGq~qrv~laral~~~p~lllL   95 (177)
T cd03222          68 QYID----------------------------------------------------LSGGELQRVAIAAALLRNATFYLF   95 (177)
T ss_pred             ccCC----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence            8653                                                    999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 048556          424 DEATSALDAESERVVQEALDKIM-I-NRTTVIVAHRLSTVRN-ADLIAVIHQGKL  475 (478)
Q Consensus       424 DEpts~LD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~vl~~G~i  475 (478)
                      ||||++||+.+++.+.+.+++.. + ++|+|++||+++.+.. ||++++|+++-.
T Consensus        96 DEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~  150 (177)
T cd03222          96 DEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPG  150 (177)
T ss_pred             ECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCc
Confidence            99999999999999999998874 3 3899999999999885 999999988744

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=8.3e-37  Score=329.53  Aligned_cols=192  Identities=26%  Similarity=0.410  Sum_probs=159.3

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      -++++|+++.|++   +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ +          ..+
T Consensus       324 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i  389 (556)
T PRK11819        324 VIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKL  389 (556)
T ss_pred             EEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEE
Confidence            5999999999963   4699999999999999999999999999999999999999999999854 2          159


Q ss_pred             EEEecCC-CCCcc-cHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCccc-cccCCCCCCChHHHHHHHHHHHH
Q 048556          340 GLVSQEP-VLFTS-SIKDNINYGKDGA--SIAEIMAAAELANAAKFIDSLPQGLDT-MVGEHGTQLSGGQKQRIAIARAI  414 (478)
Q Consensus       340 ~~v~Q~~-~lf~~-ti~eNl~~~~~~~--~~~~~~~a~~~~~~~~~i~~lp~g~~t-~~~~~g~~LSgGq~Qrl~lARal  414 (478)
                      +|+||++ .++.. |++||+.++....  ...+. .      ..+.+..+  |+.. .......+||||||||++||||+
T Consensus       390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~-~------~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~la~al  460 (556)
T PRK11819        390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREI-P------SRAYVGRF--NFKGGDQQKKVGVLSGGERNRLHLAKTL  460 (556)
T ss_pred             EEEeCchhhcCCCCCHHHHHHhhcccccccccHH-H------HHHHHHhC--CCChhHhcCchhhCCHHHHHHHHHHHHH
Confidence            9999997 56665 9999998764211  11110 0      11234444  5532 34667789999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeC-CEEe
Q 048556          415 LKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQ-GKLV  476 (478)
Q Consensus       415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~-G~i~  476 (478)
                      +.+|++|||||||++||+.+...+.+.|++..  .|+|+|||+++.+.. ||+|++|++ |++.
T Consensus       461 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~  522 (556)
T PRK11819        461 KQGGNVLLLDEPTNDLDVETLRALEEALLEFP--GCAVVISHDRWFLDRIATHILAFEGDSQVE  522 (556)
T ss_pred             hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--CeEEEEECCHHHHHHhCCEEEEEECCCeEE
Confidence            99999999999999999999999999998863  489999999998876 999999986 7765

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=7.5e-37  Score=334.37  Aligned_cols=195  Identities=25%  Similarity=0.429  Sum_probs=160.4

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      -++++||++.|++   +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+ |.++          .+
T Consensus       319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i  384 (635)
T PRK11147        319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV  384 (635)
T ss_pred             eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence            4899999999963   46999999999999999999999999999999999999999999998 4332          59


Q ss_pred             EEEecCC-CCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHHHHHHcC
Q 048556          340 GLVSQEP-VLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQKQRIAIARAILK  416 (478)
Q Consensus       340 ~~v~Q~~-~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~Qrl~lARall~  416 (478)
                      +|++|++ .+++. |+.||+.++.+.....+..     ..+.+++..+  |+. .........||||||||++||||++.
T Consensus       385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgGekqRl~la~al~~  457 (635)
T PRK11147        385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRP-----RHVLGYLQDF--LFHPKRAMTPVKALSGGERNRLLLARLFLK  457 (635)
T ss_pred             EEEeCcccccCCCCCHHHHHHhhcccccccchH-----HHHHHHHHhc--CCCHHHHhChhhhCCHHHHHHHHHHHHHhc
Confidence            9999986 46665 9999998764322111100     1123344444  443 23455678899999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEe-CCEEee
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIH-QGKLVE  477 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~-~G~i~~  477 (478)
                      +|++|||||||++||+.+...+.+.|++.  +.|+|+|||+.+.+.. ||+|++++ +|++.+
T Consensus       458 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~  518 (635)
T PRK11147        458 PSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGR  518 (635)
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEE
Confidence            99999999999999999999999999875  4599999999999876 99999998 899864

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.7e-36  Score=331.16  Aligned_cols=190  Identities=26%  Similarity=0.444  Sum_probs=158.2

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      -|+++|+++.|++   +++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++.           ..+
T Consensus       312 ~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i  377 (638)
T PRK10636        312 LLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL  377 (638)
T ss_pred             eEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence            5899999999963   46999999999999999999999999999999999999999999999741           269


Q ss_pred             EEEecCC--CCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHHHHHHc
Q 048556          340 GLVSQEP--VLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQKQRIAIARAIL  415 (478)
Q Consensus       340 ~~v~Q~~--~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~Qrl~lARall  415 (478)
                      +|++|++  .+... |+.+++....+....+++         .+++..+  |+. .........||||||||++||||++
T Consensus       378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~---------~~~L~~~--~l~~~~~~~~~~~LSgGekqRl~La~~l~  446 (638)
T PRK10636        378 GYFAQHQLEFLRADESPLQHLARLAPQELEQKL---------RDYLGGF--GFQGDKVTEETRRFSGGEKARLVLALIVW  446 (638)
T ss_pred             EEecCcchhhCCccchHHHHHHHhCchhhHHHH---------HHHHHHc--CCChhHhcCchhhCCHHHHHHHHHHHHHh
Confidence            9999985  34443 888887532222122222         3344444  443 2455667899999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEe
Q 048556          416 KDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLV  476 (478)
Q Consensus       416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~  476 (478)
                      .+|++|||||||++||+.+...+.+.|+++ + .|+|+|||++.++.. ||+|++|++|+++
T Consensus       447 ~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~  506 (638)
T PRK10636        447 QRPNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVE  506 (638)
T ss_pred             cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            999999999999999999999999999886 3 599999999999876 9999999999986

>PRK13409 putative ATPase RIL; Provisional

Probab=100.00  E-value=1.5e-36  Score=327.40  Aligned_cols=188  Identities=26%  Similarity=0.337  Sum_probs=158.8

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      -++++|++++|++    ..|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++             ..+
T Consensus       340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i  402 (590)
T PRK13409        340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKI  402 (590)
T ss_pred             EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeE
Confidence            4899999999953    35999999999999999999999999999999999999999999885             159


Q ss_pred             EEEecCCCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCC
Q 048556          340 GLVSQEPVLF-TSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDP  418 (478)
Q Consensus       340 ~~v~Q~~~lf-~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~  418 (478)
                      +|+||++.++ ..|++||+.++......+.        ...++++.+  |++........+|||||+||++|||||+.+|
T Consensus       403 ~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~--------~~~~~L~~l--~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p  472 (590)
T PRK13409        403 SYKPQYIKPDYDGTVEDLLRSITDDLGSSY--------YKSEIIKPL--QLERLLDKNVKDLSGGELQRVAIAACLSRDA  472 (590)
T ss_pred             EEecccccCCCCCcHHHHHHHHhhhcChHH--------HHHHHHHHC--CCHHHHhCCcccCCHHHHHHHHHHHHHhcCC
Confidence            9999998765 4599999987532222111        113444444  5655566778899999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 048556          419 RILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKL  475 (478)
Q Consensus       419 ~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i  475 (478)
                      ++|||||||++||+.+...+.+.|+++.+  ++|+|+|||++..+.. |||+++|++ ++
T Consensus       473 ~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~  531 (590)
T PRK13409        473 DLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EP  531 (590)
T ss_pred             CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cc
Confidence            99999999999999999999999998753  6899999999998876 999999965 54

>PLN03073 ABC transporter F family; Provisional

Probab=100.00  E-value=3.3e-36  Score=330.53  Aligned_cols=190  Identities=28%  Similarity=0.430  Sum_probs=155.0

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      -++++|++|.|++  .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++           +..+
T Consensus       508 ~L~~~~ls~~y~~--~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i  574 (718)
T PLN03073        508 IISFSDASFGYPG--GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM  574 (718)
T ss_pred             eEEEEeeEEEeCC--CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence            5999999999963  23699999999999999999999999999999999999999999999865           2469


Q ss_pred             EEEecCCCCCcccHHHHHhcC----CCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-cccCCCCCCChHHHHHHHHHHHH
Q 048556          340 GLVSQEPVLFTSSIKDNINYG----KDGASIAEIMAAAELANAAKFIDSLPQGLDT-MVGEHGTQLSGGQKQRIAIARAI  414 (478)
Q Consensus       340 ~~v~Q~~~lf~~ti~eNl~~~----~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t-~~~~~g~~LSgGq~Qrl~lARal  414 (478)
                      +|++|++. ...++.+|..+.    .+...++++.+.++..           |+.. ........||||||||++||||+
T Consensus       575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~-----------gl~~~~~~~~~~~LSgGqkqRvaLAraL  642 (718)
T PLN03073        575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSF-----------GVTGNLALQPMYTLSGGQKSRVAFAKIT  642 (718)
T ss_pred             EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHC-----------CCChHHhcCCccccCHHHHHHHHHHHHH
Confidence            99999863 222455553211    1233344444444333           3432 34456789999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEe
Q 048556          415 LKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLV  476 (478)
Q Consensus       415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~  476 (478)
                      +.+|++|||||||++||+.+.+.+.+.+.+.  +.|+|+|||++..+.. ||++++|++|+++
T Consensus       643 ~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~gtvIivSHd~~~i~~~~drv~~l~~G~i~  703 (718)
T PLN03073        643 FKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QGGVLMVSHDEHLISGSVDELWVVSEGKVT  703 (718)
T ss_pred             hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence            9999999999999999999999999998775  3599999999999876 9999999999986

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.2e-36  Score=284.06  Aligned_cols=207  Identities=27%  Similarity=0.427  Sum_probs=173.8

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH-HHhhcc
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL-KWIRGK  338 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~  338 (478)
                      -|+++||++.|.+   +++|+|||++|++||..+|+||||||||||+++++|.++|++|.+.+.|+....-+. .++|++
T Consensus        31 li~l~~v~v~r~g---k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~  107 (257)
T COG1119          31 LIELKNVSVRRNG---KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR  107 (257)
T ss_pred             eEEecceEEEECC---EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence            4999999999964   589999999999999999999999999999999999999999999999999887776 899999


Q ss_pred             eEEEecCCCC-C--cccHHHHHhcCC------C--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 048556          339 IGLVSQEPVL-F--TSSIKDNINYGK------D--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQR  407 (478)
Q Consensus       339 i~~v~Q~~~l-f--~~ti~eNl~~~~------~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qr  407 (478)
                      ||+|+-+-.. |  ..+++|-+.-|.      .  ..++++..++      ...++.+  |.....+..-..||-|||||
T Consensus       108 IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a------~~lle~~--g~~~la~r~~~~LS~Ge~rr  179 (257)
T COG1119         108 IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAA------QWLLELL--GAKHLADRPFGSLSQGEQRR  179 (257)
T ss_pred             hCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHH------HHHHHHc--chhhhccCchhhcCHhHHHH
Confidence            9999875431 2  347777775332      1  3344443332      2233333  66667777789999999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC---CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          408 IAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI---NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       408 l~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~---~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +-|||||+++|++|||||||++||...++.+.+.+.++..   ..++|+|||+.+.+.. .++++.+++|+++.
T Consensus       180 vLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~  253 (257)
T COG1119         180 VLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVA  253 (257)
T ss_pred             HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceee
Confidence            9999999999999999999999999999999999988753   5789999999998877 59999999999875

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=3.1e-36  Score=351.04  Aligned_cols=208  Identities=24%  Similarity=0.386  Sum_probs=168.9

Q ss_pred             cEEEEeEEEECCCC----------CCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC--CccEEEECCeec
Q 048556          260 DIELKDIYFSYPSR----------PGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGVNL  327 (478)
Q Consensus       260 ~i~~~~v~~~y~~~----------~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~~  327 (478)
                      .++++||+|.++..          +.+++|+|+|+++++|+++||+||||||||||+++|+|..++  .+|+|.+||.+.
T Consensus       867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~  946 (1470)
T PLN03140        867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK  946 (1470)
T ss_pred             eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence            68999999997521          123699999999999999999999999999999999999873  689999999886


Q ss_pred             CCCCHHHhhcceEEEecCCCCCcc-cHHHHHhcCC----C-CCCHHH----HHHHHHHhcHHHHHHhCCCCccccccCCC
Q 048556          328 KEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYGK----D-GASIAE----IMAAAELANAAKFIDSLPQGLDTMVGEHG  397 (478)
Q Consensus       328 ~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNl~~~~----~-~~~~~~----~~~a~~~~~~~~~i~~lp~g~~t~~~~~g  397 (478)
                      .+   ..+++.++||+|++.+++. |++||+.++.    | ..+.++    +.+.++..++.+       -.++.+|..+
T Consensus       947 ~~---~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~-------~~~~~vg~~~ 1016 (1470)
T PLN03140        947 KQ---ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDN-------LKDAIVGLPG 1016 (1470)
T ss_pred             Ch---HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChh-------HhCCccCCCC
Confidence            42   4567789999999988875 9999998752    2 222222    223333333322       2366666443


Q ss_pred             -CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchh--hhhcCEEEEEeC-
Q 048556          398 -TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLST--VRNADLIAVIHQ-  472 (478)
Q Consensus       398 -~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~i~vl~~-  472 (478)
                       ..||||||||++|||+|+.+|++|+||||||+||+.++..+++.|+++. +++|+|+++|+++.  .+.+|++++|++ 
T Consensus      1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140       1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred             CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence             6899999999999999999999999999999999999999999999875 47899999999984  466999999996 


Q ss_pred             CEEee
Q 048556          473 GKLVE  477 (478)
Q Consensus       473 G~i~~  477 (478)
                      |+++.
T Consensus      1097 G~~v~ 1101 (1470)
T PLN03140       1097 GQVIY 1101 (1470)
T ss_pred             CEEEE
Confidence            88764

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=4.8e-36  Score=275.53  Aligned_cols=153  Identities=25%  Similarity=0.452  Sum_probs=129.7

Q ss_pred             CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHH
Q 048556          276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKD  355 (478)
Q Consensus       276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~e  355 (478)
                      .++|+|+||++++|++++|+||||||||||++++.    +++|++.++|.. ..+    .++.++|++|           
T Consensus         8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~----~~~~~~~~~q-----------   67 (176)
T cd03238           8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF----SRNKLIFIDQ-----------   67 (176)
T ss_pred             eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc----ccccEEEEhH-----------
Confidence            57999999999999999999999999999999985    368999998763 121    2445888887           


Q ss_pred             HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-cccCCCCCCChHHHHHHHHHHHHcCC--CCEEEEeCCCCCCCH
Q 048556          356 NINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDT-MVGEHGTQLSGGQKQRIAIARAILKD--PRILLLDEATSALDA  432 (478)
Q Consensus       356 Nl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t-~~~~~g~~LSgGq~Qrl~lARall~~--~~ililDEpts~LD~  432 (478)
                                             .++++.+  |+.. .+.+...+||||||||++||||++++  |+++||||||++||+
T Consensus        68 -----------------------~~~l~~~--~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~  122 (176)
T cd03238          68 -----------------------LQFLIDV--GLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQ  122 (176)
T ss_pred             -----------------------HHHHHHc--CCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCH
Confidence                                   1233444  3433 36677899999999999999999999  999999999999999


Q ss_pred             HHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEEeCC
Q 048556          433 ESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIAVIHQG  473 (478)
Q Consensus       433 ~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl~~G  473 (478)
                      .+.+.+.+.|+++. .++|+|++||+++.++.||++++|++|
T Consensus       123 ~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g  164 (176)
T cd03238         123 QDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPG  164 (176)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCC
Confidence            99999999998875 478999999999999889999999664

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.3e-36  Score=327.26  Aligned_cols=198  Identities=23%  Similarity=0.340  Sum_probs=156.2

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      |+++|++++|++   +++|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|..           .++
T Consensus         2 i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~   67 (638)
T PRK10636          2 IVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLA   67 (638)
T ss_pred             EEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEE
Confidence            689999999963   479999999999999999999999999999999999999999999998742           378


Q ss_pred             EEecCCCCCcccHHHHHhcCCCCC---C-----------HHHH---HHHH-------HHhcHHHHHHhCCCCcc-ccccC
Q 048556          341 LVSQEPVLFTSSIKDNINYGKDGA---S-----------IAEI---MAAA-------ELANAAKFIDSLPQGLD-TMVGE  395 (478)
Q Consensus       341 ~v~Q~~~lf~~ti~eNl~~~~~~~---~-----------~~~~---~~a~-------~~~~~~~~i~~lp~g~~-t~~~~  395 (478)
                      |++|++..+..|+.+++.-+....   +           ...+   ....       ....+.+.+..+  |+. .....
T Consensus        68 ~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~  145 (638)
T PRK10636         68 WVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLER  145 (638)
T ss_pred             EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcC
Confidence            888865444445555443211000   0           0000   0000       011234455555  664 34566


Q ss_pred             CCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCE
Q 048556          396 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGK  474 (478)
Q Consensus       396 ~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~  474 (478)
                      ...+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++.  +.|+|+|||++..+.. ||+|++|++|+
T Consensus       146 ~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~  223 (638)
T PRK10636        146 PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQS  223 (638)
T ss_pred             chhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCE
Confidence            77899999999999999999999999999999999999999999999875  4699999999999876 99999999999


Q ss_pred             Ee
Q 048556          475 LV  476 (478)
Q Consensus       475 i~  476 (478)
                      ++
T Consensus       224 i~  225 (638)
T PRK10636        224 LF  225 (638)
T ss_pred             EE
Confidence            85

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=1.1e-34  Score=317.32  Aligned_cols=197  Identities=26%  Similarity=0.420  Sum_probs=153.3

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      |+++|++++|++   +++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|..           .++
T Consensus         4 l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~~~   69 (635)
T PRK11147          4 ISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------IVA   69 (635)
T ss_pred             EEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------EEE
Confidence            789999999963   479999999999999999999999999999999999999999999998631           257


Q ss_pred             EEecCCCC-CcccHHHHHhcCCC------------------CCCHHHHHHHH-------------HHhcHHHHHHhCCCC
Q 048556          341 LVSQEPVL-FTSSIKDNINYGKD------------------GASIAEIMAAA-------------ELANAAKFIDSLPQG  388 (478)
Q Consensus       341 ~v~Q~~~l-f~~ti~eNl~~~~~------------------~~~~~~~~~a~-------------~~~~~~~~i~~lp~g  388 (478)
                      +++|.+.. ..+++.+++..+..                  +...+.+....             ....+.+.+..+  |
T Consensus        70 ~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--g  147 (635)
T PRK11147         70 RLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL--G  147 (635)
T ss_pred             EeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--C
Confidence            77776532 22466665432110                  00001010000             011234455554  4


Q ss_pred             ccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEE
Q 048556          389 LDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLI  467 (478)
Q Consensus       389 ~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i  467 (478)
                      +.  .......||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.  .|+|+|||+...+.. ||+|
T Consensus       148 l~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~--~tvlivsHd~~~l~~~~d~i  223 (635)
T PRK11147        148 LD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ--GSIIFISHDRSFIRNMATRI  223 (635)
T ss_pred             CC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHhcCeE
Confidence            53  245678999999999999999999999999999999999999999999998863  599999999999876 9999


Q ss_pred             EEEeCCEEee
Q 048556          468 AVIHQGKLVE  477 (478)
Q Consensus       468 ~vl~~G~i~~  477 (478)
                      ++|++|+++.
T Consensus       224 ~~L~~G~i~~  233 (635)
T PRK11147        224 VDLDRGKLVS  233 (635)
T ss_pred             EEEECCEEEE
Confidence            9999999863

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.9e-35  Score=265.75  Aligned_cols=212  Identities=28%  Similarity=0.493  Sum_probs=178.4

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECC-eecCCCCHHHh-hc
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG-VNLKEFQLKWI-RG  337 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g-~~~~~~~~~~~-r~  337 (478)
                      .++++|||.+|++   -.+|+|+||++.+||.-+|+||||+||||++..|.|-.+|+.|+++++| .|+..++...+ |.
T Consensus         5 iL~~~~vsVsF~G---F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~   81 (249)
T COG4674           5 ILYLDGVSVSFGG---FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA   81 (249)
T ss_pred             eEEEeceEEEEcc---eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence            4789999999975   3699999999999999999999999999999999999999999999999 99999997776 45


Q ss_pred             ceEEEecCCCCCcc-cHHHHHhcCCCC-CC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 048556          338 KIGLVSQEPVLFTS-SIKDNINYGKDG-AS----IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIA  411 (478)
Q Consensus       338 ~i~~v~Q~~~lf~~-ti~eNl~~~~~~-~~----~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lA  411 (478)
                      -||-=+|.|..|.. |++||+.+.... .+    .---....+...+++.+...  |+..........||.||||++.|+
T Consensus        82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~i--gL~~~~~~~A~~LSHGqKQwLEIG  159 (249)
T COG4674          82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATI--GLGDERDRLAALLSHGQKQWLEIG  159 (249)
T ss_pred             ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHc--ccchhhhhhhhhhccchhhhhhhh
Confidence            59999999999987 999999876421 11    00001112223334444333  555556666789999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEe
Q 048556          412 RAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLV  476 (478)
Q Consensus       412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~  476 (478)
                      .-++.+|++|+||||++++..+..+..-+.++++...+++++|-|+|.+++. ||+|-||.+|.+.
T Consensus       160 Mll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL  225 (249)
T COG4674         160 MLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVL  225 (249)
T ss_pred             eeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEecccee
Confidence            9999999999999999999999888999999999989999999999999988 9999999999874

>PRK13409 putative ATPase RIL; Provisional

Probab=100.00  E-value=1.2e-35  Score=320.54  Aligned_cols=193  Identities=23%  Similarity=0.387  Sum_probs=157.0

Q ss_pred             EeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEE-----------ECCeecCCCCH
Q 048556          264 KDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL-----------IDGVNLKEFQL  332 (478)
Q Consensus       264 ~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~-----------~~g~~~~~~~~  332 (478)
                      ++++++|.+  ...+|++++ ++++||++||+||||||||||+|+|+|+++|++|+|.           ++|.++.++..
T Consensus        77 ~~~~~~yg~--~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~  153 (590)
T PRK13409         77 EEPVHRYGV--NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFK  153 (590)
T ss_pred             cCceEEecC--CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHH
Confidence            347899963  236999999 9999999999999999999999999999999999998           99998865432


Q ss_pred             HH--hhcceE----EEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHH
Q 048556          333 KW--IRGKIG----LVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQ  406 (478)
Q Consensus       333 ~~--~r~~i~----~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Q  406 (478)
                      +-  .+..++    |++|.|.+|.+|++||+....   ..+++         .+.++.+  |++........+|||||+|
T Consensus       154 ~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~---~~~~~---------~~~l~~l--~l~~~~~~~~~~LSgGe~q  219 (590)
T PRK13409        154 KLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD---ERGKL---------DEVVERL--GLENILDRDISELSGGELQ  219 (590)
T ss_pred             HHhccCcceeecccchhhhhhhhcchHHHHHHhhh---HHHHH---------HHHHHHc--CCchhhcCChhhCCHHHHH
Confidence            11  112344    555566778889999997421   11222         3344444  5655566778899999999


Q ss_pred             HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCC
Q 048556          407 RIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQG  473 (478)
Q Consensus       407 rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G  473 (478)
                      |++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||++++|++|
T Consensus       220 rv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~  287 (590)
T PRK13409        220 RVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE  287 (590)
T ss_pred             HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence            999999999999999999999999999999999999987668899999999999877 9999999773

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=3.4e-35  Score=253.57  Aligned_cols=195  Identities=28%  Similarity=0.412  Sum_probs=162.5

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCC---ccEEEECCeecCCCCHHHhh
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGVNLKEFQLKWIR  336 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~r  336 (478)
                      -+.++||+.+.++   .-.|.|+||+|.+||++.+.||||||||||+.-+.|.+.++   +|++.+|++++..++..  +
T Consensus         2 ~l~l~nvsl~l~g---~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--q   76 (213)
T COG4136           2 MLCLKNVSLRLPG---SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--Q   76 (213)
T ss_pred             ceeeeeeeecCCC---ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--h
Confidence            3678999987764   46899999999999999999999999999999999999874   79999999999888755  6


Q ss_pred             cceEEEecCCCCCcc-cHHHHHhcCCCCC-CHH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 048556          337 GKIGLVSQEPVLFTS-SIKDNINYGKDGA-SIA----EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAI  410 (478)
Q Consensus       337 ~~i~~v~Q~~~lf~~-ti~eNl~~~~~~~-~~~----~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~l  410 (478)
                      +++|+++||++||+. ++-+|+.|.-|.. .-+    ....|++.++           ++......+.+||||||.|+++
T Consensus        77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~g-----------L~g~f~~dP~tlSGGQrARvaL  145 (213)
T COG4136          77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSG-----------LDGAFHQDPATLSGGQRARVAL  145 (213)
T ss_pred             hheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhc-----------cchhhhcChhhcCcchHHHHHH
Confidence            899999999999997 9999999987642 212    2233444444           4444445567899999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCCeEEEEecCchhhhhcCEEEEE
Q 048556          411 ARAILKDPRILLLDEATSALDAESERVVQEALDKI-M-INRTTVIVAHRLSTVRNADLIAVI  470 (478)
Q Consensus       411 ARall~~~~ililDEpts~LD~~~~~~i~~~l~~~-~-~~~t~i~itH~~~~~~~~d~i~vl  470 (478)
                      -|+|+..|+.++||||+|.||..-+.++.+-.... . .+..++.|||+...+....|++-|
T Consensus       146 ~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~  207 (213)
T COG4136         146 LRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM  207 (213)
T ss_pred             HHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence            99999999999999999999999888887776432 2 467899999999998877777765

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.3e-34  Score=265.78  Aligned_cols=207  Identities=29%  Similarity=0.472  Sum_probs=175.4

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhcc--CCCCccEEEECCeecCCCCHHHh-hc
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGVNLKEFQLKWI-RG  337 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~--~~~~~G~i~~~g~~~~~~~~~~~-r~  337 (478)
                      ++++|++.+-.++  +++|+++|++|++||+.+|.||||||||||.+.|+|.  |++++|+|.++|+|+.++++++. |.
T Consensus         4 L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~   81 (251)
T COG0396           4 LEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA   81 (251)
T ss_pred             eEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence            7899999988642  4799999999999999999999999999999999998  58899999999999999999886 44


Q ss_pred             ceEEEecCCCCCcc-cHHHHHhcCCCC---------CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 048556          338 KIGLVSQEPVLFTS-SIKDNINYGKDG---------ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQR  407 (478)
Q Consensus       338 ~i~~v~Q~~~lf~~-ti~eNl~~~~~~---------~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qr  407 (478)
                      -+...+|.|.=++| |+.+-+..+...         ...+++.++++..++++..      ++..++   ..||||||.|
T Consensus        82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~------l~R~vN---~GFSGGEkKR  152 (251)
T COG0396          82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEF------LERYVN---EGFSGGEKKR  152 (251)
T ss_pred             CCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHH------hhcccC---CCcCcchHHH
Confidence            49999999999999 999988754211         1123555555555555422      222333   5699999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhc--CEEEEEeCCEEeeC
Q 048556          408 IAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNA--DLIAVIHQGKLVEK  478 (478)
Q Consensus       408 l~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~--d~i~vl~~G~i~~~  478 (478)
                      ..|+.+++-+|++.|||||-|+||.++-+.|.+.+.+++ +++++++|||.-..+.+.  |++.||-+|+|+.+
T Consensus       153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~s  226 (251)
T COG0396         153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKS  226 (251)
T ss_pred             HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEec
Confidence            999999999999999999999999999999999999886 578999999999998885  99999999999853

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=8.4e-35  Score=286.41  Aligned_cols=211  Identities=30%  Similarity=0.479  Sum_probs=171.1

Q ss_pred             cEEEEeEEEECCC-CCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----CccEEEECCeecCCCCHH
Q 048556          260 DIELKDIYFSYPS-RPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGVNLKEFQLK  333 (478)
Q Consensus       260 ~i~~~~v~~~y~~-~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~~~~~~~~  333 (478)
                      -++++|++.+|.. +...++++++||+|++||++|+||+||||||-..+.++|+++.     .+|+|.++|.|+-..+..
T Consensus         6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~   85 (534)
T COG4172           6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER   85 (534)
T ss_pred             ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence            3789999888852 2235799999999999999999999999999999999999854     469999999999999988


Q ss_pred             Hhhc----ceEEEecCCCCC--cc-cH----HHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCC
Q 048556          334 WIRG----KIGLVSQEPVLF--TS-SI----KDNINYGKDG---ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQ  399 (478)
Q Consensus       334 ~~r~----~i~~v~Q~~~lf--~~-ti----~eNl~~~~~~---~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~  399 (478)
                      ++|+    +|++|+|+|.--  +- ||    .|-|.+...-   +-.++..+.++.+|+.+        =...+...+.+
T Consensus        86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~--------p~~rl~~yPHe  157 (534)
T COG4172          86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPE--------PEKRLDAYPHE  157 (534)
T ss_pred             HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCc--------hhhhhhhCCcc
Confidence            8764    699999999632  21 44    4444443311   11234444444444432        12355677899


Q ss_pred             CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEe
Q 048556          400 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLV  476 (478)
Q Consensus       400 LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~  476 (478)
                      ||||||||+-||.||+.+|++||-||||.+||...+.+|.+.|+++.+  +..+++|||++..+++ ||||+||.+|+++
T Consensus       158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv  237 (534)
T COG4172         158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV  237 (534)
T ss_pred             cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence            999999999999999999999999999999999999999999998853  6799999999999988 9999999999999


Q ss_pred             eC
Q 048556          477 EK  478 (478)
Q Consensus       477 ~~  478 (478)
                      |.
T Consensus       238 E~  239 (534)
T COG4172         238 ET  239 (534)
T ss_pred             ec
Confidence            84

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=7.1e-35  Score=340.51  Aligned_cols=197  Identities=24%  Similarity=0.345  Sum_probs=159.8

Q ss_pred             CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccC----CCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc
Q 048556          276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFY----DPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS  351 (478)
Q Consensus       276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~----~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~  351 (478)
                      +++|+|+|+++++||+++|+||||||||||+|+|+|..    .|.+|+|.+||.++.+.. ..+|+.++||+|++.+|+.
T Consensus        74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~  152 (1394)
T TIGR00956        74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH  152 (1394)
T ss_pred             ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence            46899999999999999999999999999999999986    578999999999886543 3457789999999988876


Q ss_pred             -cHHHHHhcCC----C-----CCCHHHHHHHHHHhcHHHHHHh--CCCCccccccC-CCCCCChHHHHHHHHHHHHcCCC
Q 048556          352 -SIKDNINYGK----D-----GASIAEIMAAAELANAAKFIDS--LPQGLDTMVGE-HGTQLSGGQKQRIAIARAILKDP  418 (478)
Q Consensus       352 -ti~eNl~~~~----~-----~~~~~~~~~a~~~~~~~~~i~~--lp~g~~t~~~~-~g~~LSgGq~Qrl~lARall~~~  418 (478)
                       |++||+.++.    |     ..+.++..+..    .++.++.  +.+-.||.+|+ ....||||||||++|||||+.+|
T Consensus       153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p  228 (1394)
T TIGR00956       153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHI----ADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGA  228 (1394)
T ss_pred             CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH----HHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCC
Confidence             9999998752    1     11222221110    1112332  33335677764 56789999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCc-hhh-hhcCEEEEEeCCEEee
Q 048556          419 RILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRL-STV-RNADLIAVIHQGKLVE  477 (478)
Q Consensus       419 ~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~-~~~-~~~d~i~vl~~G~i~~  477 (478)
                      ++++|||||++||+.++..+.+.|+++.+  ++|+|+++|++ +.+ +.+|++++|++|+++.
T Consensus       229 ~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~  291 (1394)
T TIGR00956       229 KIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIY  291 (1394)
T ss_pred             CEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEE
Confidence            99999999999999999999999999853  68999999997 344 4599999999999874

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=100.00  E-value=2.6e-34  Score=303.24  Aligned_cols=198  Identities=32%  Similarity=0.481  Sum_probs=162.5

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      .|+++|++++|++   +++++|+||++.+|+++||||+||||||||+|+|+|...|++|+|...+.           -++
T Consensus         3 ~i~~~~ls~~~g~---~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v   68 (530)
T COG0488           3 MITLENLSLAYGD---RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRV   68 (530)
T ss_pred             eEEEeeeEEeeCC---ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceE
Confidence            4889999999953   58999999999999999999999999999999999999999999987432           269


Q ss_pred             EEEecCCCCCcc-cHHHHHhcCCCCCCH--HHHHHHHH-------------------------HhcHHHHHHhCCCCccc
Q 048556          340 GLVSQEPVLFTS-SIKDNINYGKDGASI--AEIMAAAE-------------------------LANAAKFIDSLPQGLDT  391 (478)
Q Consensus       340 ~~v~Q~~~lf~~-ti~eNl~~~~~~~~~--~~~~~a~~-------------------------~~~~~~~i~~lp~g~~t  391 (478)
                      +|++|++.+.++ |+++.+..+......  .+...+..                         .+.+...+..+  |+..
T Consensus        69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~  146 (530)
T COG0488          69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPD  146 (530)
T ss_pred             EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCc
Confidence            999999999976 999999877532110  11111110                         02223334434  4444


Q ss_pred             cccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEE
Q 048556          392 MVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVI  470 (478)
Q Consensus       392 ~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl  470 (478)
                      . ...-.+||||||.|++|||||+.+|++|+|||||++||.++...+.+-|.+. ++ |+|+|||+-+++.. |++|+-+
T Consensus       147 ~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~~l  223 (530)
T COG0488         147 E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHILEL  223 (530)
T ss_pred             c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheEEe
Confidence            4 5566899999999999999999999999999999999999999999999874 44 99999999999998 9999999


Q ss_pred             eCCEEe
Q 048556          471 HQGKLV  476 (478)
Q Consensus       471 ~~G~i~  476 (478)
                      +.|++.
T Consensus       224 d~g~l~  229 (530)
T COG0488         224 DRGKLT  229 (530)
T ss_pred             cCCcee
Confidence            999874

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=1.3e-34  Score=257.55  Aligned_cols=206  Identities=24%  Similarity=0.444  Sum_probs=165.4

Q ss_pred             EEEEeEEEECCCC------CCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHH
Q 048556          261 IELKDIYFSYPSR------PGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW  334 (478)
Q Consensus       261 i~~~~v~~~y~~~------~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~  334 (478)
                      ++++|+|+++..+      ....+.+.+||+.++|+.+||+|.||||||||+|+|+|+++|++|+|++||+++.--|...
T Consensus         5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~   84 (267)
T COG4167           5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF   84 (267)
T ss_pred             hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence            5677777665422      1235899999999999999999999999999999999999999999999999998777777


Q ss_pred             hhcceEEEecCCCC-CcccHHHHHh--------cC---CCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 048556          335 IRGKIGLVSQEPVL-FTSSIKDNIN--------YG---KDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSG  402 (478)
Q Consensus       335 ~r~~i~~v~Q~~~l-f~~ti~eNl~--------~~---~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg  402 (478)
                      ..++|-+++|||.- |+  -|-|+.        +.   .|....+++.+.++.+|+      +|+--+    -....||-
T Consensus        85 R~k~IRMiFQDpnts~N--PRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL------~Pdhan----~~~~~la~  152 (267)
T COG4167          85 RSKRIRMIFQDPNTSLN--PRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGL------LPDHAN----YYPHMLAP  152 (267)
T ss_pred             hhhheeeeecCCccccC--hhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhcc------Cccccc----cchhhcCc
Confidence            77889999999962 33  122221        11   112233455555666554      343221    24678999


Q ss_pred             HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEeeC
Q 048556          403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVEK  478 (478)
Q Consensus       403 Gq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~  478 (478)
                      |||||+||||||+-+|+|+|-||+-.+||..-+.++.+.+.++.  .+..-|+|+.++-.+++ +|+|+||++|+++|.
T Consensus       153 ~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~  231 (267)
T COG4167         153 GQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVER  231 (267)
T ss_pred             hhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeec
Confidence            99999999999999999999999999999999999999987764  46789999999999999 999999999999984

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=2.9e-34  Score=334.60  Aligned_cols=199  Identities=26%  Similarity=0.397  Sum_probs=160.3

Q ss_pred             CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCC---ccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc-
Q 048556          276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-  351 (478)
Q Consensus       276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-  351 (478)
                      +++|+|+|+.|+|||+++|+||||||||||+|+|+|.++|+   +|+|.+||+++.+..   .|+.++||+|++.+|+. 
T Consensus       178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l  254 (1470)
T PLN03140        178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM  254 (1470)
T ss_pred             ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence            46899999999999999999999999999999999999998   999999999986654   36789999999888875 


Q ss_pred             cHHHHHhcCCC----C--------CCHHH----------H---HHHHHHh------cHHHHHHhC--CCCccccccC-CC
Q 048556          352 SIKDNINYGKD----G--------ASIAE----------I---MAAAELA------NAAKFIDSL--PQGLDTMVGE-HG  397 (478)
Q Consensus       352 ti~eNl~~~~~----~--------~~~~~----------~---~~a~~~~------~~~~~i~~l--p~g~~t~~~~-~g  397 (478)
                      |++||+.++..    .        .+.++          +   +++....      ..++.++.+  .+-.||.+|+ ..
T Consensus       255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~  334 (1470)
T PLN03140        255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI  334 (1470)
T ss_pred             cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence            99999987521    0        01111          1   1111111      123344443  3334677764 45


Q ss_pred             CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCch--hhhhcCEEEEEeCC
Q 048556          398 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLS--TVRNADLIAVIHQG  473 (478)
Q Consensus       398 ~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~--~~~~~d~i~vl~~G  473 (478)
                      ..||||||||++|||+++.+|++++|||||++||+.+...+.+.|+++.  .++|+|+++|++.  ..+.+|+|++|++|
T Consensus       335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G  414 (1470)
T PLN03140        335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG  414 (1470)
T ss_pred             cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence            7899999999999999999999999999999999999999999999985  3789999999973  45569999999999


Q ss_pred             EEee
Q 048556          474 KLVE  477 (478)
Q Consensus       474 ~i~~  477 (478)
                      +++.
T Consensus       415 ~ivy  418 (1470)
T PLN03140        415 QIVY  418 (1470)
T ss_pred             eEEE
Confidence            9974

>PLN03073 ABC transporter F family; Provisional

Probab=100.00  E-value=5.4e-34  Score=313.05  Aligned_cols=210  Identities=24%  Similarity=0.318  Sum_probs=157.7

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccC---CCCccEEEECCeecCCCC--H--
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFY---DPQAGEVLIDGVNLKEFQ--L--  332 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~---~~~~G~i~~~g~~~~~~~--~--  332 (478)
                      .|+++|++|+|++   .++|+|+||+|++|+++|||||||||||||+++|+|..   .|.+|+|.+.++++...+  .  
T Consensus       177 ~I~i~nls~~y~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~  253 (718)
T PLN03073        177 DIHMENFSISVGG---RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ  253 (718)
T ss_pred             eEEEceEEEEeCC---CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence            5999999999963   46999999999999999999999999999999999864   578899987555432111  1  


Q ss_pred             ----------HHhhcceEEEecCCCCCcccHHHHHhcCCC-CCCH----HHHHHHHHHh----------cHHHHHHhCCC
Q 048556          333 ----------KWIRGKIGLVSQEPVLFTSSIKDNINYGKD-GASI----AEIMAAAELA----------NAAKFIDSLPQ  387 (478)
Q Consensus       333 ----------~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~-~~~~----~~~~~a~~~~----------~~~~~i~~lp~  387 (478)
                                ..+++.+++++|++.+...+..+|...... ....    +++.++.+..          .+.+.+..+  
T Consensus       254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l--  331 (718)
T PLN03073        254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL--  331 (718)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC--
Confidence                      112455888999876544444444422110 0111    1222222211          122344444  


Q ss_pred             Ccc-ccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cC
Q 048556          388 GLD-TMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-AD  465 (478)
Q Consensus       388 g~~-t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d  465 (478)
                      |++ ........+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++  ++|+|+|||++..+.. ||
T Consensus       332 gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~d  409 (718)
T PLN03073        332 SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVVT  409 (718)
T ss_pred             CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCC
Confidence            553 2344556899999999999999999999999999999999999999999999886  5799999999999877 99


Q ss_pred             EEEEEeCCEEe
Q 048556          466 LIAVIHQGKLV  476 (478)
Q Consensus       466 ~i~vl~~G~i~  476 (478)
                      +|++|++|+++
T Consensus       410 ~i~~l~~g~i~  420 (718)
T PLN03073        410 DILHLHGQKLV  420 (718)
T ss_pred             EEEEEECCEEE
Confidence            99999999985

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=100.00  E-value=3e-34  Score=253.38  Aligned_cols=136  Identities=38%  Similarity=0.692  Sum_probs=121.4

Q ss_pred             cccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc-cHHHHH
Q 048556          279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNI  357 (478)
Q Consensus       279 l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNl  357 (478)
                      |+|+||+|++|++++|+||||||||||+++|+|.++|++|+|.+||.++...+...+++.++|++|++.+|++ |++|| 
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~-   79 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN-   79 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence            6899999999999999999999999999999999999999999999999998889999999999999999987 79999 


Q ss_pred             hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCC
Q 048556          358 NYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS  428 (478)
Q Consensus       358 ~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts  428 (478)
                            ..++++.++++..++.+       ..++.++.+...||||||||++||||++++|+++||||||+
T Consensus        80 ------~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~  137 (137)
T PF00005_consen   80 ------ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN  137 (137)
T ss_dssp             ------HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred             ------ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence                  23345555555554433       34678888889999999999999999999999999999996

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.7e-33  Score=304.57  Aligned_cols=211  Identities=28%  Similarity=0.458  Sum_probs=175.9

Q ss_pred             ccEEEEeEEEECCCCC--CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC---CccEEEECCeecCCCCHH
Q 048556          259 GDIELKDIYFSYPSRP--GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP---QAGEVLIDGVNLKEFQLK  333 (478)
Q Consensus       259 ~~i~~~~v~~~y~~~~--~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~---~~G~i~~~g~~~~~~~~~  333 (478)
                      ..++++|+++..++.+  .+.+|+|||.+++|||+.||.||||||||||+++|+|..+.   .+|+|++||++   .+.+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~---~~~~  100 (613)
T KOG0061|consen   24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRP---RDSR  100 (613)
T ss_pred             ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCcc---Cchh
Confidence            4689999999886542  36899999999999999999999999999999999999974   78999999954   4556


Q ss_pred             HhhcceEEEecCCCCCcc-cHHHHHhcCC----CC-CCHHHHHHHHHHhcHHHHHHhCCCC--ccccccC-CCCCCChHH
Q 048556          334 WIRGKIGLVSQEPVLFTS-SIKDNINYGK----DG-ASIAEIMAAAELANAAKFIDSLPQG--LDTMVGE-HGTQLSGGQ  404 (478)
Q Consensus       334 ~~r~~i~~v~Q~~~lf~~-ti~eNl~~~~----~~-~~~~~~~~a~~~~~~~~~i~~lp~g--~~t~~~~-~g~~LSgGq  404 (478)
                      .+++..|||+||..+++. ||+|++.+..    |. .+.++     +...+++.+.+|..-  -||.+|. +...+||||
T Consensus       101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~-----k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGE  175 (613)
T KOG0061|consen  101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEE-----KRERVEEVISELGLEKCADTLIGNPGIRGLSGGE  175 (613)
T ss_pred             hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHH-----HHHHHHHHHHHcCChhhccceecCCCCCccccch
Confidence            789999999999999987 9999998753    22 12222     223345566666322  3577763 347899999


Q ss_pred             HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchh--hhhcCEEEEEeCCEEee
Q 048556          405 KQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLST--VRNADLIAVIHQGKLVE  477 (478)
Q Consensus       405 ~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~i~vl~~G~i~~  477 (478)
                      |+|++||.-++.||+||+||||||+||..+...+.+.|+++. ++||||++=|+++.  ....|++++|.+|+++-
T Consensus       176 rkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy  251 (613)
T KOG0061|consen  176 RKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVY  251 (613)
T ss_pred             hhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEE
Confidence            999999999999999999999999999999999999999986 58999999999974  56689999999998863

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=7.4e-34  Score=267.67  Aligned_cols=193  Identities=26%  Similarity=0.413  Sum_probs=152.7

Q ss_pred             cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEe-cCCCCCcc-cHH
Q 048556          277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVS-QEPVLFTS-SIK  354 (478)
Q Consensus       277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~-Q~~~lf~~-ti~  354 (478)
                      ++.+||||+|++|++++++|||||||||++|+|.|+..|++|.|.++|.+..+-..+.+ +++++|. |...+.-+ .+.
T Consensus        38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~-~~~~~v~gqk~ql~Wdlp~~  116 (325)
T COG4586          38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYL-RSIGLVMGQKLQLWWDLPAL  116 (325)
T ss_pred             hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHH-HHHHHHhhhhheeeeechhh
Confidence            68999999999999999999999999999999999999999999999998766444444 4455443 43333211 233


Q ss_pred             HHHhcCC--CCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCH
Q 048556          355 DNINYGK--DGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA  432 (478)
Q Consensus       355 eNl~~~~--~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~  432 (478)
                      |-+....  -+..+++..+     .+..+.+-|  +++..+......||-|||.|..||.||+++|+||+|||||-+||.
T Consensus       117 ds~~v~~~Iy~Ipd~~F~~-----r~~~l~eiL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV  189 (325)
T COG4586         117 DSLEVLKLIYEIPDDEFAE-----RLDFLTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV  189 (325)
T ss_pred             hhHHHHHHHHhCCHHHHHH-----HHHHHHHHh--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcch
Confidence            3333211  1233333322     223344444  678888888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          433 ESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       433 ~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      .++..|.+.+++..  .++||++.||.++.+.. ||||+.++.|+++.
T Consensus       190 ~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~  237 (325)
T COG4586         190 NAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVF  237 (325)
T ss_pred             hHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEee
Confidence            99999999998875  47899999999998877 99999999999874

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.1e-33  Score=248.81  Aligned_cols=188  Identities=22%  Similarity=0.386  Sum_probs=159.6

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++.+|++..-.   +...+.++||++.+||.+-|.||||||||||+|+|+|+.+|++|+|.++|.++..... ..++.+.
T Consensus         3 L~a~~L~~~R~---e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~-~~~~~l~   78 (209)
T COG4133           3 LEAENLSCERG---ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRE-SYHQALL   78 (209)
T ss_pred             chhhhhhhccC---cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchh-hHHHHHH
Confidence            34566665432   4579999999999999999999999999999999999999999999999999877643 3477899


Q ss_pred             EEecCCCCCcc-cHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556          341 LVSQEPVLFTS-SIKDNINYGKDG---ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK  416 (478)
Q Consensus       341 ~v~Q~~~lf~~-ti~eNl~~~~~~---~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~  416 (478)
                      |+...+-+=+. |+.||+.|....   .+.+.+++|++.+++..+ ..+|          ..+||.||++|+||||-.+.
T Consensus        79 yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~-~dlp----------~~~LSAGQqRRvAlArL~ls  147 (209)
T COG4133          79 YLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-EDLP----------VGQLSAGQQRRVALARLWLS  147 (209)
T ss_pred             HhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccc-cccc----------hhhcchhHHHHHHHHHHHcC
Confidence            99999988765 999999987532   456889999999988753 2333          45799999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN  463 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~  463 (478)
                      .+|++||||||++||.+.+..+-..+.... .+..||..||....+..
T Consensus       148 ~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~  195 (209)
T COG4133         148 PAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIAS  195 (209)
T ss_pred             CCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCCc
Confidence            999999999999999999999999987664 57799999999876643

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=100.00  E-value=1.6e-29  Score=255.74  Aligned_cols=443  Identities=17%  Similarity=0.216  Sum_probs=292.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCh---hhhhccCChhH---HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556            6 VTGERQAARIRGLYLKTLLRQDI---GFFDKETHSGE---IIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSK   79 (478)
Q Consensus         6 ~~~~~~~~~lr~~l~~~l~~~~~---~~~~~~~~sG~---l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (478)
                      ++-.+..-.+|.++.+|+.++=+   +||.-.+-.|.   .=+++++|+....+...+....+...++-++.+.+.+.-.
T Consensus       179 yle~klaLafrtrL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s  258 (728)
T KOG0064|consen  179 YLESKLALAFRTRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDS  258 (728)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence            34445555666666666654321   33332101122   2356889998888888888777777766665544444322


Q ss_pred             hHHHH--HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHH
Q 048556           80 GWLLT--LVMLSS--IPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYK  155 (478)
Q Consensus        80 ~~~l~--li~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~  155 (478)
                      +...+  .+.++.  .-+-..+.+.+.++..++..+.....+.+...-...+.+-++|-.|+-.+.+.+++++..+....
T Consensus       259 ~~s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~  338 (728)
T KOG0064|consen  259 ATSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVE  338 (728)
T ss_pred             hccccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence            22111  111111  11122345666778888888888888888888899999999999999999999999998888766


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------hCCC--C-HH-----HHHHHHHHHHHHHHHHH
Q 048556          156 SGVHEGLAAGLGFGAFTFVAFSSYSLAIWFGGKMIL------------EKGY--K-GG-----DVINVIFCVMIGSMSLG  215 (478)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~------------~g~l--s-~G-----~l~~~~~~~~~~~~~l~  215 (478)
                      .-....+...++..+-+|+.-     .+|-|.-+|+            .+..  + .|     .+...=-+.......+.
T Consensus       339 qm~li~k~r~~YiMleqF~mK-----YvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAie  413 (728)
T KOG0064|consen  339 QMNLIFKVRLWYIMLEQFVMK-----YTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIE  413 (728)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-----HhhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence            544444433333333333221     2233322221            1110  0 01     11111112222333556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcc---C----------CCcccCC-----CCCCccC-----CCCccEEEEeEEEECCC
Q 048556          216 QASPCISAFAAGQAAAYKLFEAIER---K----------PLIDAYD-----SNGVKLD-----DIRGDIELKDIYFSYPS  272 (478)
Q Consensus       216 ~l~~~~~~~~~~~~a~~ri~~~l~~---~----------~~~~~~~-----~~~~~~~-----~~~~~i~~~~v~~~y~~  272 (478)
                      .+...+-.+.+......|+++.++.   .          ++..+..     .++.+.+     .....|.++||-.--|.
T Consensus       414 RlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~  493 (728)
T KOG0064|consen  414 RLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPA  493 (728)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceeccC
Confidence            6666666666666666777655421   0          0100000     0000000     01134889998776664


Q ss_pred             CCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCccc
Q 048556          273 RPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSS  352 (478)
Q Consensus       273 ~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~t  352 (478)
                        ...+...++|+|++|-.+.|+||||||||+|+++|.|+++...|...+-           .+.+|-|+||.|+.--||
T Consensus       494 --~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P-----------~~~~mFYIPQRPYms~gt  560 (728)
T KOG0064|consen  494 --GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIP-----------RPNNIFYIPQRPYMSGGT  560 (728)
T ss_pred             --cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecC-----------CCcceEeccCCCccCcCc
Confidence              2468899999999999999999999999999999999999988877541           134699999999988889


Q ss_pred             HHHHHhcCC-------CCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeC
Q 048556          353 IKDNINYGK-------DGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE  425 (478)
Q Consensus       353 i~eNl~~~~-------~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDE  425 (478)
                      +||-+.+++       ...+|.++++.++.+.++..++ -..|.|.. .+--.-||||||||++.||.++++|+..+|||
T Consensus       561 lRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~q-r~~g~da~-~dWkd~LsgGekQR~~mARm~yHrPkyalLDE  638 (728)
T KOG0064|consen  561 LRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQ-REGGWDAV-RDWKDVLSGGEKQRMGMARMFYHRPKYALLDE  638 (728)
T ss_pred             ccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHH-hccChhhh-ccHHhhccchHHHHHHHHHHHhcCcchhhhhh
Confidence            999999875       3567889999999999875544 44565543 34456799999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEE
Q 048556          426 ATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVI  470 (478)
Q Consensus       426 pts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl  470 (478)
                      +|||+.++-|..++++.++.  +-+.|-||||++..+.....+-.
T Consensus       639 cTsAvsidvE~~i~~~ak~~--gi~llsithrpslwk~h~~ll~~  681 (728)
T KOG0064|consen  639 CTSAVSIDVEGKIFQAAKDA--GISLLSITHRPSLWKYHTHLLEF  681 (728)
T ss_pred             hhcccccchHHHHHHHHHhc--CceEEEeecCccHHHHHHHHHhc
Confidence            99999999999999999874  68999999999987765444433

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=5.3e-32  Score=259.60  Aligned_cols=191  Identities=24%  Similarity=0.328  Sum_probs=128.8

Q ss_pred             CCcccccceeeecCCCEEEEEcCCCCChHHHH-HHHhccCCCCccEEEEC-C------eec---CCCCHHHhh-cceEEE
Q 048556          275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVI-SLIERFYDPQAGEVLID-G------VNL---KEFQLKWIR-GKIGLV  342 (478)
Q Consensus       275 ~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~-~ll~g~~~~~~G~i~~~-g------~~~---~~~~~~~~r-~~i~~v  342 (478)
                      +.++|+|+||++++||++||+||||||||||+ ..+.     .+|++.+. +      ...   ...+....+ ...++.
T Consensus         7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (226)
T cd03270           7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA   81 (226)
T ss_pred             hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence            35799999999999999999999999999996 3332     13433221 0      000   000001111 123444


Q ss_pred             ecCCCCC-c-c-c---HHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-cccCCCCCCChHHHHHHHHHHHHc
Q 048556          343 SQEPVLF-T-S-S---IKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDT-MVGEHGTQLSGGQKQRIAIARAIL  415 (478)
Q Consensus       343 ~Q~~~lf-~-~-t---i~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t-~~~~~g~~LSgGq~Qrl~lARall  415 (478)
                      .|++... + . +   +.+...+.......++..+   .   .+.++.+  |+.. .......+|||||+||++||||++
T Consensus        82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~---~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~laral~  153 (226)
T cd03270          82 IDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRE---R---LGFLVDV--GLGYLTLSRSAPTLSGGEAQRIRLATQIG  153 (226)
T ss_pred             ecCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHH---H---HHHHHHC--CCCcccccCccCcCCHHHHHHHHHHHHHH
Confidence            4444311 1 1 2   2222211110000111111   1   2344444  5554 467788999999999999999999


Q ss_pred             CCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEE------eCCEEeeC
Q 048556          416 KDP--RILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIAVI------HQGKLVEK  478 (478)
Q Consensus       416 ~~~--~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl------~~G~i~~~  478 (478)
                      .+|  +++||||||++||+.+.+.+.+.|+++. ++.|+|+|||+++.++.||++++|      ++|+|+++
T Consensus       154 ~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~  225 (226)
T cd03270         154 SGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQ  225 (226)
T ss_pred             hCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEec
Confidence            998  5999999999999999999999998874 478999999999998889999999      99999975

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.98  E-value=3.4e-32  Score=240.47  Aligned_cols=208  Identities=27%  Similarity=0.417  Sum_probs=165.2

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECC-----eecCCCCHHH
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG-----VNLKEFQLKW  334 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g-----~~~~~~~~~~  334 (478)
                      -++++++|+.|.+   ....+|+||++.|||..+|||+||||||||++.|++-..|++|+|.+.-     .++..++..+
T Consensus         6 LL~V~~lsk~Yg~---~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae   82 (258)
T COG4107           6 LLSVSGLSKLYGP---GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE   82 (258)
T ss_pred             ceeehhhhhhhCC---CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence            4789999999964   3579999999999999999999999999999999999999999999865     3455556555


Q ss_pred             hh----cceEEEecCCC--CC----c-ccHHHHHh-cCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 048556          335 IR----GKIGLVSQEPV--LF----T-SSIKDNIN-YGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSG  402 (478)
Q Consensus       335 ~r----~~i~~v~Q~~~--lf----~-~ti~eNl~-~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg  402 (478)
                      .|    ...++|.|+|.  |=    . +.|-|-+. .|..  -+..+..     ...+|++..+-. .+.+.+.+..+||
T Consensus        83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~R--HYG~iR~-----~a~~WL~~VEI~-~~RiDD~PrtFSG  154 (258)
T COG4107          83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGAR--HYGNIRA-----EAQDWLEEVEID-LDRIDDLPRTFSG  154 (258)
T ss_pred             HHHHhhhccceeecCccccceeeeccCCccchhHHhhhhh--hhhhHHH-----HHHHHHHhcccC-cccccCcccccch
Confidence            43    44799999984  11    1 13333221 1111  1222222     234677765432 2466788999999


Q ss_pred             HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEeeC
Q 048556          403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVEK  478 (478)
Q Consensus       403 Gq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~  478 (478)
                      |++||+.|||-|+..|+++++||||.+||..-++++.+.++.+-.  +-.+++|||++..++- +||.+||++|+++|+
T Consensus       155 GMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~  233 (258)
T COG4107         155 GMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVES  233 (258)
T ss_pred             HHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecc
Confidence            999999999999999999999999999999999999999988753  5799999999999887 999999999999984

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.98  E-value=2.1e-31  Score=249.33  Aligned_cols=180  Identities=28%  Similarity=0.416  Sum_probs=145.0

Q ss_pred             CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHH
Q 048556          276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKD  355 (478)
Q Consensus       276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~e  355 (478)
                      ..+|+||||++++||.+||+|+||||||||+|+|+|.|+|++|+|.++|.-..-++.     ..|+-|      +-|-||
T Consensus        40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~l-----g~Gf~p------elTGre  108 (249)
T COG1134          40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIEL-----GAGFDP------ELTGRE  108 (249)
T ss_pred             EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhc-----ccCCCc------ccchHH
Confidence            468999999999999999999999999999999999999999999998864322210     122211      238999


Q ss_pred             HHhcCC--CCCCHHHH----HHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCC
Q 048556          356 NINYGK--DGASIAEI----MAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA  429 (478)
Q Consensus       356 Nl~~~~--~~~~~~~~----~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~  429 (478)
                      |+.+-.  ...+.+|+    .+..+-+.+.+|+           .....+.|-|++-||++|-|.-.+|++||+||..+.
T Consensus       109 Ni~l~~~~~G~~~~ei~~~~~eIieFaELG~fi-----------~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlav  177 (249)
T COG1134         109 NIYLRGLILGLTRKEIDEKVDEIIEFAELGDFI-----------DQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAV  177 (249)
T ss_pred             HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh-----------hCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhc
Confidence            997632  22333333    3444445555554           344678999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHh-cCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          430 LDAESERVVQEALDKI-MINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       430 LD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      -|+.=.++=.+.+.+. .+++|+|+|||+++.++. |||+++|++|++..
T Consensus       178 GD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~  227 (249)
T COG1134         178 GDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRM  227 (249)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEE
Confidence            9999888888888887 567999999999999988 99999999999864

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.98  E-value=5e-31  Score=278.40  Aligned_cols=191  Identities=28%  Similarity=0.386  Sum_probs=161.1

Q ss_pred             ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556          259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK  338 (478)
Q Consensus       259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~  338 (478)
                      .-++++|+++.|++.  +++++++||.|++|+++||+||||+|||||+|+|+|...|.+|+|.+.-.           -+
T Consensus       320 ~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~  386 (530)
T COG0488         320 LVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VK  386 (530)
T ss_pred             eeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eE
Confidence            458999999999743  58999999999999999999999999999999999999999999987431           36


Q ss_pred             eEEEecCC-CCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556          339 IGLVSQEP-VLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK  416 (478)
Q Consensus       339 i~~v~Q~~-~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~  416 (478)
                      +||.+|+. .+++. |+.|++.-..|+..+.++...+..-++..          .........||||||-|+.||+.++.
T Consensus       387 igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~----------~~~~~~v~~LSGGEk~Rl~La~ll~~  456 (530)
T COG0488         387 IGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTG----------EDQEKPVGVLSGGEKARLLLAKLLLQ  456 (530)
T ss_pred             EEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCCh----------HHHhCchhhcCHhHHHHHHHHHHhcc
Confidence            99999988 45544 99999988776655555555554433321          22245567899999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKL  475 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i  475 (478)
                      +|.+|||||||++||.++...+.++|...  +.|||+|||+..+++. |++|+++++ ++
T Consensus       457 ~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~  513 (530)
T COG0488         457 PPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KV  513 (530)
T ss_pred             CCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ce
Confidence            99999999999999999999999999885  3599999999999998 999999987 44

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.97  E-value=2.4e-31  Score=249.55  Aligned_cols=164  Identities=24%  Similarity=0.346  Sum_probs=131.4

Q ss_pred             ccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCC---------ccEEEECCeecCCCCHHHhhcceEEEecCCCCCc
Q 048556          280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ---------AGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFT  350 (478)
Q Consensus       280 ~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---------~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~  350 (478)
                      +++++++++| +++|+||||||||||+++|+|+..|.         .|++.++|.+....   ..++++++++|++..+ 
T Consensus        14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~vfq~~~~~-   88 (197)
T cd03278          14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP---ANFAEVTLTFDNSDGR-   88 (197)
T ss_pred             CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC---CceEEEEEEEEcCCCc-
Confidence            5799999999 99999999999999999999998665         34677777765432   2357899999999877 


Q ss_pred             ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc----CCCCEEEEeCC
Q 048556          351 SSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL----KDPRILLLDEA  426 (478)
Q Consensus       351 ~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall----~~~~ililDEp  426 (478)
                              ++.  ...+++.++         ++. + +   ........||||||||++|||+++    .+|++++||||
T Consensus        89 --------~~~--~~~~~~~~~---------l~~-~-~---~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP  144 (197)
T cd03278          89 --------YSI--ISQGDVSEI---------IEA-P-G---KKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEV  144 (197)
T ss_pred             --------eeE--EehhhHHHH---------HhC-C-C---ccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCC
Confidence                    211  012233333         222 2 2   223456789999999999999986    56799999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeC
Q 048556          427 TSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQ  472 (478)
Q Consensus       427 ts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~  472 (478)
                      |++||+.+...+.+.|+++.++.|+|+|||+++.++.||+++.+..
T Consensus       145 ~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~  190 (197)
T cd03278         145 DAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM  190 (197)
T ss_pred             cccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence            9999999999999999998777899999999999988999999854

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.97  E-value=1.3e-30  Score=253.40  Aligned_cols=191  Identities=25%  Similarity=0.406  Sum_probs=138.9

Q ss_pred             cccccceeeecCCCEEEEEcCCCCChHHHHHHHh-----c-cC----CCCcc-----------EEEECCeecCCCCH---
Q 048556          277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIE-----R-FY----DPQAG-----------EVLIDGVNLKEFQL---  332 (478)
Q Consensus       277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~-----g-~~----~~~~G-----------~i~~~g~~~~~~~~---  332 (478)
                      .-|+|+|++|+.|..++|+|+||||||||++-+.     + +.    .|..+           -|.+|..++..-+.   
T Consensus         9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~   88 (261)
T cd03271           9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP   88 (261)
T ss_pred             hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence            4699999999999999999999999999998552     1 11    12222           35566665533110   


Q ss_pred             -------HHhhc----------------ceEEEecCCCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCC
Q 048556          333 -------KWIRG----------------KIGLVSQEPVLF-TSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQG  388 (478)
Q Consensus       333 -------~~~r~----------------~i~~v~Q~~~lf-~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g  388 (478)
                             +++|+                .+.|.+++...+ .-|+.||+.|.....   ++.      ...+.++.+  |
T Consensus        89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---~~~------~~~~~L~~v--g  157 (261)
T cd03271          89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---KIA------RKLQTLCDV--G  157 (261)
T ss_pred             HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---hHH------HHHHHHHHc--C
Confidence                   11111                133444444333 336777766543211   111      122344444  6


Q ss_pred             ccc-cccCCCCCCChHHHHHHHHHHHHcCC---CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh
Q 048556          389 LDT-MVGEHGTQLSGGQKQRIAIARAILKD---PRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN  463 (478)
Q Consensus       389 ~~t-~~~~~g~~LSgGq~Qrl~lARall~~---~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~  463 (478)
                      ++. .+++...+|||||+||++|||+|+++   |+++||||||++||+.+.+.+.+.|+++. ++.|+|+|||+++.++.
T Consensus       158 L~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~  237 (261)
T cd03271         158 LGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKC  237 (261)
T ss_pred             CchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence            665 47888999999999999999999996   79999999999999999999999998875 47899999999999999


Q ss_pred             cCEEEEE------eCCEEeeC
Q 048556          464 ADLIAVI------HQGKLVEK  478 (478)
Q Consensus       464 ~d~i~vl------~~G~i~~~  478 (478)
                      ||++++|      ++|+++++
T Consensus       238 aD~ii~Lgp~~g~~~G~iv~~  258 (261)
T cd03271         238 ADWIIDLGPEGGDGGGQVVAS  258 (261)
T ss_pred             CCEEEEecCCcCCCCCEEEEe
Confidence            9999999      89999863

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=99.97  E-value=2.8e-30  Score=290.63  Aligned_cols=205  Identities=22%  Similarity=0.463  Sum_probs=174.9

Q ss_pred             ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCC-CHHHhhc
Q 048556          259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEF-QLKWIRG  337 (478)
Q Consensus       259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~-~~~~~r~  337 (478)
                      ..+..+|+++.|+...  .+.+++|+.+++||+.|+.|||||||||+++++.|..+|++|++.++|.++..- +.++.++
T Consensus       563 ~~~~~~~L~k~y~~~~--~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~  640 (885)
T KOG0059|consen  563 SALVLNNLSKVYGGKD--GAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK  640 (885)
T ss_pred             ceEEEcceeeeecchh--hhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence            3588999999997542  299999999999999999999999999999999999999999999999999764 4456899


Q ss_pred             ceEEEecCCCCCcc-cHHHHHhcCC--CCCCHHH----HHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 048556          338 KIGLVSQEPVLFTS-SIKDNINYGK--DGASIAE----IMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAI  410 (478)
Q Consensus       338 ~i~~v~Q~~~lf~~-ti~eNl~~~~--~~~~~~~----~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~l  410 (478)
                      ++||+||+..+++. |.||++.+..  ......+    +...++..++.+.           .......+|||+|+||++
T Consensus       641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~-----------~~~~~~~ySgG~kRkLs~  709 (885)
T KOG0059|consen  641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPY-----------ANKQVRTYSGGNKRRLSF  709 (885)
T ss_pred             hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhh-----------hccchhhCCCcchhhHHH
Confidence            99999999999987 9999998753  1222222    3444444444332           233367899999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCC-CeEEEEecCchhhhh-cCEEEEEeCCEEe
Q 048556          411 ARAILKDPRILLLDEATSALDAESERVVQEALDKIMIN-RTTVIVAHRLSTVRN-ADLIAVIHQGKLV  476 (478)
Q Consensus       411 ARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~-~t~i~itH~~~~~~~-~d~i~vl~~G~i~  476 (478)
                      |-|++.+|++++|||||+|+||.+++.+++.+++..++ +.+|++||.+++.+. |||+.+|.+|++.
T Consensus       710 aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~  777 (885)
T KOG0059|consen  710 AIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLR  777 (885)
T ss_pred             HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeE
Confidence            99999999999999999999999999999999998764 499999999999998 9999999999975

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=1.5e-30  Score=229.15  Aligned_cols=202  Identities=28%  Similarity=0.384  Sum_probs=148.5

Q ss_pred             cEEEEeEEEECCC--CC--CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCe----ecCCCC
Q 048556          260 DIELKDIYFSYPS--RP--GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGV----NLKEFQ  331 (478)
Q Consensus       260 ~i~~~~v~~~y~~--~~--~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~----~~~~~~  331 (478)
                      .+.++|++++|.-  +.  .-|+++|+||+++.||++++=||||||||||++.|.+-|.|++|+|.+...    |+-...
T Consensus         4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~   83 (235)
T COG4778           4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE   83 (235)
T ss_pred             eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence            3778888776631  11  137999999999999999999999999999999999999999999998543    333333


Q ss_pred             HH----HhhcceEEEecCCCCCcc-----cHHHHHh-cCCCCCCHHHHHHHHHHhcHHHHHH--hCCCCccccccCCCCC
Q 048556          332 LK----WIRGKIGLVSQEPVLFTS-----SIKDNIN-YGKDGASIAEIMAAAELANAAKFID--SLPQGLDTMVGEHGTQ  399 (478)
Q Consensus       332 ~~----~~r~~i~~v~Q~~~lf~~-----ti~eNl~-~~~~~~~~~~~~~a~~~~~~~~~i~--~lp~g~~t~~~~~g~~  399 (478)
                      +.    -.|+.||||+|--...+-     -+.|-+. .|-+   .+...  .+   ..+.+.  .+|+.+...   .+.+
T Consensus        84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~---~~~a~--~~---a~~Ll~rLnlperLW~L---aPaT  152 (235)
T COG4778          84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVP---REVAR--AK---AADLLTRLNLPERLWSL---APAT  152 (235)
T ss_pred             hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCC---HHHHH--HH---HHHHHHHcCCCHHHhcC---CCcc
Confidence            32    235669999995333321     2233322 2222   11111  11   122232  345544433   4689


Q ss_pred             CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeC
Q 048556          400 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQ  472 (478)
Q Consensus       400 LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~  472 (478)
                      +||||+||+-|||.++-|-+||+|||||++||..+++.+.+.|.+.+ ++..++=|=|+-+.-+. |||++-|..
T Consensus       153 FSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~  227 (235)
T COG4778         153 FSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA  227 (235)
T ss_pred             cCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence            99999999999999999999999999999999999999999998875 57888999999877666 899988754

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.96  E-value=4.1e-30  Score=244.43  Aligned_cols=192  Identities=20%  Similarity=0.216  Sum_probs=141.8

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeec-CCCEEEEEcCCCCChHHHHHHHhc-cCCCCccEEEECCeecCCCCHHHhhc
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIP-SGTTAALVGQSGSGKSTVISLIER-FYDPQAGEVLIDGVNLKEFQLKWIRG  337 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~-~G~~~~ivG~sGsGKSTL~~ll~g-~~~~~~G~i~~~g~~~~~~~~~~~r~  337 (478)
                      .|+++|+. +|.+.      ++++|+.. +|++++|+||||||||||+++|++ +|.+..+....+ .....+.....+.
T Consensus         5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~   76 (213)
T cd03279           5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTA   76 (213)
T ss_pred             EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccE
Confidence            58899987 77532      46777654 599999999999999999999994 666655655543 1112233334466


Q ss_pred             ceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCC-ccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556          338 KIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQG-LDTMVGEHGTQLSGGQKQRIAIARAILK  416 (478)
Q Consensus       338 ~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g-~~t~~~~~g~~LSgGq~Qrl~lARall~  416 (478)
                      .|++++|++.-.-.    +..++  ..+.++..+...          ++.| +++.+...+.+|||||+||++||||++.
T Consensus        77 ~v~~~f~~~~~~~~----~~r~~--gl~~~~~~~~~~----------l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~  140 (213)
T cd03279          77 EVSFTFQLGGKKYR----VERSR--GLDYDQFTRIVL----------LPQGEFDRFLARPVSTLSGGETFLASLSLALAL  140 (213)
T ss_pred             EEEEEEEECCeEEE----EEEec--CCCHHHHHHhhh----------hhhcchHHHhcCCccccCHHHHHHHHHHHHHHh
Confidence            79999998743221    22222  233333332210          1222 5667778889999999999999999974


Q ss_pred             ----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 048556          417 ----------DPRILLLDEATSALDAESERVVQEALDKIMI-NRTTVIVAHRLSTVRN-ADLIAVIHQGKL  475 (478)
Q Consensus       417 ----------~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-~d~i~vl~~G~i  475 (478)
                                +|+++||||||++||+.+.+.+.+.++++.+ ++|+|+|||+++.+.. ||+++++++|..
T Consensus       141 ~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~  211 (213)
T cd03279         141 SEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG  211 (213)
T ss_pred             HHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence                      6789999999999999999999999988864 7899999999998876 899999999854

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.96  E-value=5.5e-30  Score=248.30  Aligned_cols=192  Identities=24%  Similarity=0.346  Sum_probs=134.2

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHh----------------ccCCCCcc-----
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIE----------------RFYDPQAG-----  318 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~----------------g~~~~~~G-----  318 (478)
                      .|+++|. ++|.+   ..++.+++     |++++|+||||||||||+++|+                +++.+.+|     
T Consensus         3 ~i~~~nf-ksy~~---~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~   73 (243)
T cd03272           3 QVIIQGF-KSYKD---QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMS   73 (243)
T ss_pred             EEEEeCc-cCccc---CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCce
Confidence            3666664 23542   35777876     8999999999999999999998                44455555     


Q ss_pred             ---EEEECCeecC-CC--CHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHH--HhCCCC--
Q 048556          319 ---EVLIDGVNLK-EF--QLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFI--DSLPQG--  388 (478)
Q Consensus       319 ---~i~~~g~~~~-~~--~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i--~~lp~g--  388 (478)
                         +|.+++.+-. ..  +...+++.++++||+..++..           ..+.++++..++..++...-  ...|+|  
T Consensus        74 ~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~-----------~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i  142 (243)
T cd03272          74 AYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKK-----------NVTKNDVMNLLESAGFSRSNPYYIVPQGKI  142 (243)
T ss_pred             EEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCe-----------EcCHHHHHHHHHHcCCCCCCCcEEEEcCch
Confidence               5555553211 01  122356678888887766542           22344444444443332100  001111  


Q ss_pred             -----ccccccCCCCCCChHHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCch
Q 048556          389 -----LDTMVGEHGTQLSGGQKQRIAIARAIL----KDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLS  459 (478)
Q Consensus       389 -----~~t~~~~~g~~LSgGq~Qrl~lARall----~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~  459 (478)
                           +.....+.+..||||||||++||||++    ++|+++||||||++||+.+.+.+.+.|+++.++.|+|++||+.+
T Consensus       143 ~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~  222 (243)
T cd03272         143 NSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPE  222 (243)
T ss_pred             HHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence                 222345678899999999999999996    46899999999999999999999999998866778899999988


Q ss_pred             hhhhcCEEEEEe
Q 048556          460 TVRNADLIAVIH  471 (478)
Q Consensus       460 ~~~~~d~i~vl~  471 (478)
                      ..+.||++++|+
T Consensus       223 ~~~~~d~i~~l~  234 (243)
T cd03272         223 LLEVADKFYGVK  234 (243)
T ss_pred             HHhhCCEEEEEE
Confidence            777899999984

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.96  E-value=5.2e-28  Score=249.82  Aligned_cols=209  Identities=23%  Similarity=0.364  Sum_probs=172.2

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH-HHhhcc
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL-KWIRGK  338 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~  338 (478)
                      .++++|++..       ..++|+||++++||++||.|--|||+|-|++.|.|..++.+|+|.+||+++.-.++ +.++.-
T Consensus       263 ~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G  335 (500)
T COG1129         263 VLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG  335 (500)
T ss_pred             EEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence            4677777542       25789999999999999999999999999999999999999999999999887765 467888


Q ss_pred             eEEEecCC---CCCcc-cHHHHHhcCCC-CCCHH-HHHHHHHHhcHHHHHHhCCCCcccc-ccCCCCCCChHHHHHHHHH
Q 048556          339 IGLVSQEP---VLFTS-SIKDNINYGKD-GASIA-EIMAAAELANAAKFIDSLPQGLDTM-VGEHGTQLSGGQKQRIAIA  411 (478)
Q Consensus       339 i~~v~Q~~---~lf~~-ti~eNl~~~~~-~~~~~-~~~~a~~~~~~~~~i~~lp~g~~t~-~~~~g~~LSgGq~Qrl~lA  411 (478)
                      |+|||.|.   .+|.+ +|++|+.+..- ..+.. -+....+..-..+++..|  ++.+. ......+||||.+||+.||
T Consensus       336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l--~Ik~~s~~~~v~~LSGGNQQKVvla  413 (500)
T COG1129         336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRL--RIKTPSPEQPIGTLSGGNQQKVVLA  413 (500)
T ss_pred             CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhc--CcccCCccchhhcCCchhhhhHHHH
Confidence            99999975   36765 99999998721 11100 233444555566777776  33332 2356789999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEee
Q 048556          412 RAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVR-NADLIAVIHQGKLVE  477 (478)
Q Consensus       412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~  477 (478)
                      |.|..+|++|||||||.|+|.-++++|.+.|+++. +++++|+||-.+.++- .||||+||.+|+++.
T Consensus       414 rwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~  481 (500)
T COG1129         414 RWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVG  481 (500)
T ss_pred             HHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999986 5799999999998866 599999999999974

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.95  E-value=2e-28  Score=238.61  Aligned_cols=180  Identities=18%  Similarity=0.241  Sum_probs=134.4

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhccCCCC-ccEEEECCe-ecCCCC--HHHhhcceEEEecCCC---------CCc-ccHH
Q 048556          289 GTTAALVGQSGSGKSTVISLIERFYDPQ-AGEVLIDGV-NLKEFQ--LKWIRGKIGLVSQEPV---------LFT-SSIK  354 (478)
Q Consensus       289 G~~~~ivG~sGsGKSTL~~ll~g~~~~~-~G~i~~~g~-~~~~~~--~~~~r~~i~~v~Q~~~---------lf~-~ti~  354 (478)
                      ..+++|+||||||||||+++|+++..++ .|++...|. ++-...  ....+..+.+++|++.         +.+ -||.
T Consensus        25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~  104 (251)
T cd03273          25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT  104 (251)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence            5699999999999999999999999876 468888776 432111  1122458999999862         222 3788


Q ss_pred             HHHhcCCCC--------CCHHHHHHHHHHhcHHHHHHhCCCCcc---------------ccccCCCCCCChHHHHHHHHH
Q 048556          355 DNINYGKDG--------ASIAEIMAAAELANAAKFIDSLPQGLD---------------TMVGEHGTQLSGGQKQRIAIA  411 (478)
Q Consensus       355 eNl~~~~~~--------~~~~~~~~a~~~~~~~~~i~~lp~g~~---------------t~~~~~g~~LSgGq~Qrl~lA  411 (478)
                      +|+..+...        ...+++.+.++.+++.      ++...               .........||||||||++||
T Consensus       105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~------~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la  178 (251)
T cd03273         105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLN------VNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALS  178 (251)
T ss_pred             EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCC------CCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHH
Confidence            887654321        1223444444444432      00011               334567789999999999999


Q ss_pred             HHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEe--CCE
Q 048556          412 RAIL----KDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIH--QGK  474 (478)
Q Consensus       412 Rall----~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~--~G~  474 (478)
                      ||++    .+|++++|||||++||+.+.+.+.+.|+++.++.|+|+|||+.+.++.||+++-+.  +|.
T Consensus       179 ~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~~~~~~  247 (251)
T cd03273         179 LILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTRFVDGT  247 (251)
T ss_pred             HHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEEeeCCE
Confidence            9997    57899999999999999999999999999877889999999998899999998774  553

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.95  E-value=5.7e-28  Score=227.98  Aligned_cols=163  Identities=25%  Similarity=0.303  Sum_probs=129.0

Q ss_pred             ceeeecCCCEEEEEcCCCCChHHHHHHHh----ccCCCCccEEEECCeecCCCCHHHhhcceEEEecCC-----CCCcc-
Q 048556          282 FSLSIPSGTTAALVGQSGSGKSTVISLIE----RFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEP-----VLFTS-  351 (478)
Q Consensus       282 is~~i~~G~~~~ivG~sGsGKSTL~~ll~----g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~-----~lf~~-  351 (478)
                      .++++.+| +++|+||||||||||+++|.    |...|..|.+..+...+..   ...+..+++++|++     .++.. 
T Consensus        16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~---~~~~~~v~~~f~~~~~~~~~v~r~~   91 (204)
T cd03240          16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE---GEVRAQVKLAFENANGKKYTITRSL   91 (204)
T ss_pred             eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC---CCCcEEEEEEEEeCCCCEEEEEEEh
Confidence            44567777 99999999999999999994    8888888877522222222   23456899999998     33333 


Q ss_pred             cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHH------HHHHHHHcCCCCEEEEeC
Q 048556          352 SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQR------IAIARAILKDPRILLLDE  425 (478)
Q Consensus       352 ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qr------l~lARall~~~~ililDE  425 (478)
                      |+.+|+.+..    .+++.         +.+           .+....||+||+||      ++||||++.+|++++|||
T Consensus        92 ~~~~~~~~~~----~~~~~---------~~~-----------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDE  147 (204)
T cd03240          92 AILENVIFCH----QGESN---------WPL-----------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDE  147 (204)
T ss_pred             hHhhceeeec----hHHHH---------HHH-----------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcC
Confidence            8999997642    22221         111           45568999999996      799999999999999999


Q ss_pred             CCCCCCHHHHH-HHHHHHHHhcC--CCeEEEEecCchhhhhcCEEEEEeC
Q 048556          426 ATSALDAESER-VVQEALDKIMI--NRTTVIVAHRLSTVRNADLIAVIHQ  472 (478)
Q Consensus       426 pts~LD~~~~~-~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~vl~~  472 (478)
                      ||++||+.+.+ .+.+.|+++.+  ++|+|++||+++.+..||++++|++
T Consensus       148 P~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~  197 (204)
T cd03240         148 PTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK  197 (204)
T ss_pred             CccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence            99999999999 99999988764  6799999999999888999999965

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.95  E-value=2.3e-28  Score=216.39  Aligned_cols=198  Identities=25%  Similarity=0.403  Sum_probs=166.7

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++||+..       .-|-.+|.++..||++-+|||||||||||+-.++|+.+ .+|+|.++|.++..++..++.++-+
T Consensus         4 ~qln~v~~~-------tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~~~~~eLArhRA   75 (248)
T COG4138           4 MQLNDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHRA   75 (248)
T ss_pred             eeecccccc-------ccccccccccccceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhHHhHhHHHHHHH
Confidence            456666542       23678999999999999999999999999999999985 6899999999999999999999999


Q ss_pred             EEecCC-CCCcccHHHHHhcCCCCCCH-HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC--
Q 048556          341 LVSQEP-VLFTSSIKDNINYGKDGASI-AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK--  416 (478)
Q Consensus       341 ~v~Q~~-~lf~~ti~eNl~~~~~~~~~-~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~--  416 (478)
                      |..|+. -.|...+..-+.+..|+.+. +++.+.+.         .+  +++..++.....|||||.||+-+|-..+.  
T Consensus        76 YLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~---------~L--~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~  144 (248)
T COG4138          76 YLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAG---------AL--ALDDKLGRSTNQLSGGEWQRVRLAAVVLQIT  144 (248)
T ss_pred             HHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHh---------hh--cccchhhhhhhhcCcccceeeEEeEEEEEec
Confidence            999865 47888999999998886221 12322222         22  67778888889999999999999988775  


Q ss_pred             ---C--CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCch-hhhhcCEEEEEeCCEEee
Q 048556          417 ---D--PRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLS-TVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       417 ---~--~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~-~~~~~d~i~vl~~G~i~~  477 (478)
                         |  .++|++|||.++||...+..+-..|.+++ .+.+||+.+|+++ ++++||++..+..|++..
T Consensus       145 Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~  212 (248)
T COG4138         145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLA  212 (248)
T ss_pred             CCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEe
Confidence               3  37999999999999999999988888886 5899999999997 799999999999999753

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.95  E-value=5.5e-28  Score=229.31  Aligned_cols=185  Identities=20%  Similarity=0.224  Sum_probs=135.7

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      .++++|.- +|.+   ..+++++++     ++++|+|||||||||++++|.          +++|.+...    ..++++
T Consensus         5 ~l~l~nfk-~~~~---~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~~----~~~~~i   61 (212)
T cd03274           5 KLVLENFK-SYAG---EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRASK----MRQKKL   61 (212)
T ss_pred             EEEEECcc-cCCC---CeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHHH----hhhhhH
Confidence            47788875 6743   468999887     899999999999999999997          334443321    123579


Q ss_pred             EEEecCCCCCcc-cHHHHHhcCCCCCCHHHH-----HHHH-H----HhcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 048556          340 GLVSQEPVLFTS-SIKDNINYGKDGASIAEI-----MAAA-E----LANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRI  408 (478)
Q Consensus       340 ~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~-----~~a~-~----~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl  408 (478)
                      ++++|+..+++. |.++++.+.......+.+     .... +    ...+ ..+..+|++.++.    ...||+|||||+
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~-~~~~~L~~~~~~~----~~~lS~G~~~r~  136 (212)
T cd03274          62 SDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEV-EQIAQMPKKSWKN----ISNLSGGEKTLS  136 (212)
T ss_pred             HHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcE-EEeeccccccccc----hhhcCHHHHHHH
Confidence            999999887765 777777665422111100     0000 0    0011 1233456665554    458999999999


Q ss_pred             HHHHHHcC----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeC
Q 048556          409 AIARAILK----DPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQ  472 (478)
Q Consensus       409 ~lARall~----~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~  472 (478)
                      +||||++.    +|++++|||||++||+.+.+.+.+.++++.++.|+|++||+.+..+.||++++|..
T Consensus       137 ~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~  204 (212)
T cd03274         137 SLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK  204 (212)
T ss_pred             HHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence            99999963    57999999999999999999999999998777899999999888888999999953

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.94  E-value=4.5e-27  Score=239.49  Aligned_cols=193  Identities=27%  Similarity=0.380  Sum_probs=156.8

Q ss_pred             ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556          259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK  338 (478)
Q Consensus       259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~  338 (478)
                      ..+.++||+|.|+++  ..++++++|-|..++.+|+|||||+|||||+|++.|...|..|.+.-.-+           ..
T Consensus       388 pvi~~~nv~F~y~~~--~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~  454 (614)
T KOG0927|consen  388 PVIMVQNVSFGYSDN--PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NK  454 (614)
T ss_pred             CeEEEeccccCCCCc--chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------cc
Confidence            458999999999864  36999999999999999999999999999999999999999999864322           23


Q ss_pred             eEEEecCC---CCCcccHHHHHhcCCCC-CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 048556          339 IGLVSQEP---VLFTSSIKDNINYGKDG-ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI  414 (478)
Q Consensus       339 i~~v~Q~~---~lf~~ti~eNl~~~~~~-~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal  414 (478)
                      +++..|+-   --++-|.-|++.--.++ -..+++...+...|+....+..|          -.+||+|||.|+++||.+
T Consensus       455 ~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p----------~~~LS~Gqr~rVlFa~l~  524 (614)
T KOG0927|consen  455 LPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVP----------MSQLSDGQRRRVLFARLA  524 (614)
T ss_pred             chhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccc----------hhhcccccchhHHHHHHH
Confidence            44455533   23556777887644443 44566666677766654433332          368999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEe
Q 048556          415 LKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLV  476 (478)
Q Consensus       415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~  476 (478)
                      +++|.+|+|||||++||.++-....++|.+.  ..+||+|||+...+.+ +++|.+.+||.+.
T Consensus       525 ~kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~  585 (614)
T KOG0927|consen  525 VKQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVT  585 (614)
T ss_pred             hcCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCcee
Confidence            9999999999999999999999999999774  4589999999999988 8999999998764

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.94  E-value=4.8e-27  Score=260.39  Aligned_cols=192  Identities=27%  Similarity=0.433  Sum_probs=159.2

Q ss_pred             CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC--CCccEEEECCeecCCCCHHHhhcceEEEecCCC-CCcc
Q 048556          275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD--PQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPV-LFTS  351 (478)
Q Consensus       275 ~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~-lf~~  351 (478)
                      .+..|+|++=-++||..+|++|+||||||||++.|+|-..  ..+|+|++||.+..+   +.++|.+|||.|++. +=.-
T Consensus       803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~  879 (1391)
T KOG0065|consen  803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPEL  879 (1391)
T ss_pred             ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCccc
Confidence            3579999999999999999999999999999999999864  357999999999765   678999999999774 4344


Q ss_pred             cHHHHHhcCC-----CCCCHHHH----HHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCC-CEE
Q 048556          352 SIKDNINYGK-----DGASIAEI----MAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDP-RIL  421 (478)
Q Consensus       352 ti~eNl~~~~-----~~~~~~~~----~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~-~il  421 (478)
                      ||||-|.+..     ++.+++|-    +++.+..++.++       -|..||.-|..||..||+|+.||=-|+.+| .|+
T Consensus       880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~il  952 (1391)
T KOG0065|consen  880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSGLSTEQRKRLTIGVELVANPSSIL  952 (1391)
T ss_pred             chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCCCCHHHhceeeEEEEEecCCceeE
Confidence            9999998863     23344432    333333333322       367889999999999999999999999999 888


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchh--hhhcCEEEEEeCC-EEe
Q 048556          422 LLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLST--VRNADLIAVIHQG-KLV  476 (478)
Q Consensus       422 ilDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~i~vl~~G-~i~  476 (478)
                      +|||||||||+++...|++.++++. .++||++.=|+++.  ++..|+++.|+.| +.|
T Consensus       953 FLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtV 1011 (1391)
T KOG0065|consen  953 FLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTV 1011 (1391)
T ss_pred             EecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEE
Confidence            8999999999999999999999986 58999999999984  6779999999875 443

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.93  E-value=3.8e-26  Score=222.05  Aligned_cols=203  Identities=19%  Similarity=0.189  Sum_probs=136.3

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCee-c------CCCCH
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVN-L------KEFQL  332 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~-~------~~~~~  332 (478)
                      .++++|. .+|.+.        .++...++ +++|+||||||||||+.+|.++..+..|++..++.+ +      ...+.
T Consensus         3 ~i~l~nf-~~~~~~--------~~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~   72 (247)
T cd03275           3 RLELENF-KSYKGR--------HVIGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDS   72 (247)
T ss_pred             EEEEECc-cccCCC--------eeecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCC
Confidence            4777775 445321        12233334 999999999999999999999998877887654421 1      11111


Q ss_pred             HHhhcceEEEecCCC--CCcccHHHHHh---cCCCCCCHHHHHHHHHHhcHHHHHHh--CCCCcccccc---------CC
Q 048556          333 KWIRGKIGLVSQEPV--LFTSSIKDNIN---YGKDGASIAEIMAAAELANAAKFIDS--LPQGLDTMVG---------EH  396 (478)
Q Consensus       333 ~~~r~~i~~v~Q~~~--lf~~ti~eNl~---~~~~~~~~~~~~~a~~~~~~~~~i~~--lp~g~~t~~~---------~~  396 (478)
                      ....-.+.|..|++.  ++..++++.-.   +.....+.+++.+.++..++..+...  .|+|--+.+.         ..
T Consensus        73 ~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~  152 (247)
T cd03275          73 NSAYVTAVYEDDDGEEKTFRRIITGGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRD  152 (247)
T ss_pred             ceEEEEEEEEcCCCcEEEEEEEEECCceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhh
Confidence            233334555555532  33444444321   11223456666666676665311000  1222212221         23


Q ss_pred             CCCCChHHHHHHHHHHHHcCC----CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchhhhhcCEEEEEe
Q 048556          397 GTQLSGGQKQRIAIARAILKD----PRILLLDEATSALDAESERVVQEALDKIMI-NRTTVIVAHRLSTVRNADLIAVIH  471 (478)
Q Consensus       397 g~~LSgGq~Qrl~lARall~~----~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~~d~i~vl~  471 (478)
                      ..+||||||||++||||++.+    |+++||||||++||+.+...+.+.|+++.+ +.|+|+|||+.+.++.||++++|.
T Consensus       153 ~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~  232 (247)
T cd03275         153 MDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVY  232 (247)
T ss_pred             HHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEE
Confidence            378999999999999999864    899999999999999999999999998864 789999999999998899999985


Q ss_pred             C
Q 048556          472 Q  472 (478)
Q Consensus       472 ~  472 (478)
                      .
T Consensus       233 ~  233 (247)
T cd03275         233 R  233 (247)
T ss_pred             e
Confidence            4

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.93  E-value=2.3e-25  Score=258.40  Aligned_cols=202  Identities=27%  Similarity=0.380  Sum_probs=144.9

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHH---------HHhccCCCCcc--------EEEE
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVIS---------LIERFYDPQAG--------EVLI  322 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~---------ll~g~~~~~~G--------~i~~  322 (478)
                      .++++|++.        ..|+|+||+|++||+++|+|+||||||||++         .+.|...+..+        -|.+
T Consensus       600 ~L~l~~~~~--------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~i  671 (1809)
T PRK00635        600 TLTLSKATK--------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHI  671 (1809)
T ss_pred             eEEEecccc--------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEe
Confidence            477777651        3699999999999999999999999999999         55664332111        1344


Q ss_pred             CCeecCCCC----------HHHhh---------cc-----eEEEecC------------------C--------------
Q 048556          323 DGVNLKEFQ----------LKWIR---------GK-----IGLVSQE------------------P--------------  346 (478)
Q Consensus       323 ~g~~~~~~~----------~~~~r---------~~-----i~~v~Q~------------------~--------------  346 (478)
                      |-.++..-.          .+++|         +.     ..|.++.                  +              
T Consensus       672 dQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy  751 (1809)
T PRK00635        672 TRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF  751 (1809)
T ss_pred             cCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence            444432211          01333         11     1122331                  0              


Q ss_pred             ------CCCcc-cHHHHHhcCCCCC-----CHHHHHHHHHHhcHHHHHHhCCCCcccc-ccCCCCCCChHHHHHHHHHHH
Q 048556          347 ------VLFTS-SIKDNINYGKDGA-----SIAEIMAAAELANAAKFIDSLPQGLDTM-VGEHGTQLSGGQKQRIAIARA  413 (478)
Q Consensus       347 ------~lf~~-ti~eNl~~~~~~~-----~~~~~~~a~~~~~~~~~i~~lp~g~~t~-~~~~g~~LSgGq~Qrl~lARa  413 (478)
                            ..+.+ ||.||+.++...+     ..+++.+.+      +.++.+  |++.. +++...+|||||+||++||||
T Consensus       752 ~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l------~~L~~v--GL~~l~l~q~~~tLSGGE~QRV~LAra  823 (1809)
T PRK00635        752 LPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI------HALCSL--GLDYLPLGRPLSSLSGGEIQRLKLAYE  823 (1809)
T ss_pred             CHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH------HHHHHc--CCcchhhcCccccCCHHHHHHHHHHHH
Confidence                  13445 8999998864321     122332222      234444  77765 788999999999999999999


Q ss_pred             Hc---CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEEe------CCEEee
Q 048556          414 IL---KDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIAVIH------QGKLVE  477 (478)
Q Consensus       414 ll---~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl~------~G~i~~  477 (478)
                      |+   ++|+++||||||++||+.+.+.+++.|+++. ++.|+|+|||+++.++.||++++|+      +|++++
T Consensus       824 L~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~  897 (1809)
T PRK00635        824 LLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLA  897 (1809)
T ss_pred             HhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEE
Confidence            98   6999999999999999999999999998875 4789999999999998899999996      678764

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.93  E-value=1.2e-24  Score=220.95  Aligned_cols=208  Identities=22%  Similarity=0.422  Sum_probs=171.3

Q ss_pred             ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeec-CCCCHHHhhc
Q 048556          259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNL-KEFQLKWIRG  337 (478)
Q Consensus       259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~-~~~~~~~~r~  337 (478)
                      .-++++|++..-..  +.+.++++||++++||++||.|-.|-|-+-|+.+|+|+.+|.+|+|.++|+|+ ..++..++|+
T Consensus       256 ~vL~V~~L~v~~~~--~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~  333 (501)
T COG3845         256 VVLEVEDLSVKDRR--GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR  333 (501)
T ss_pred             eEEEEeeeEeecCC--CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHh
Confidence            45899999986432  34789999999999999999999999999999999999999999999999997 7778877765


Q ss_pred             c-eEEEecCCC---C-CcccHHHHHhcCCCC---------CCHHHHHHHHHHhcHHHHHHhC---CCCccccccCCCCCC
Q 048556          338 K-IGLVSQEPV---L-FTSSIKDNINYGKDG---------ASIAEIMAAAELANAAKFIDSL---PQGLDTMVGEHGTQL  400 (478)
Q Consensus       338 ~-i~~v~Q~~~---l-f~~ti~eNl~~~~~~---------~~~~~~~~a~~~~~~~~~i~~l---p~g~~t~~~~~g~~L  400 (478)
                      . ++|||.|.+   + .+.|+.||+.+....         .+..++.+.+     .+.++.+   +.+-    .....+|
T Consensus       334 ~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a-----~~li~~fdVr~~~~----~~~a~~L  404 (501)
T COG3845         334 LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFA-----RELIEEFDVRAPSP----DAPARSL  404 (501)
T ss_pred             cCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHH-----HHHHHHcCccCCCC----Ccchhhc
Confidence            5 999999984   4 455999999987532         1223333322     2334433   2222    2345789


Q ss_pred             ChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          401 SGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       401 SgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |||+.||+-+||-|.++|++||..+||-+||..+.+.|.+.|.+.+ +++.|++||-+++++-. ||||.||.+|+++.
T Consensus       405 SGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~  483 (501)
T COG3845         405 SGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVG  483 (501)
T ss_pred             CCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceec
Confidence            9999999999999999999999999999999999999999998875 57899999999998765 99999999999864

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.92  E-value=6.9e-25  Score=245.00  Aligned_cols=95  Identities=32%  Similarity=0.546  Sum_probs=85.0

Q ss_pred             HHHhCCCCccc-cccCCCCCCChHHHHHHHHHHHHcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEe
Q 048556          381 FIDSLPQGLDT-MVGEHGTQLSGGQKQRIAIARAILKDP---RILLLDEATSALDAESERVVQEALDKIM-INRTTVIVA  455 (478)
Q Consensus       381 ~i~~lp~g~~t-~~~~~g~~LSgGq~Qrl~lARall~~~---~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~it  455 (478)
                      .++.+  |++. .+++...+|||||+||++|||+|+++|   +++||||||++||+.+.+.+.+.|+++. +++|+|+||
T Consensus       813 ~L~~v--gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiit  890 (943)
T PRK00349        813 TLVDV--GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIE  890 (943)
T ss_pred             HHHHC--CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence            34444  6665 478889999999999999999999999   9999999999999999999999998875 478999999


Q ss_pred             cCchhhhhcCEEEEE------eCCEEee
Q 048556          456 HRLSTVRNADLIAVI------HQGKLVE  477 (478)
Q Consensus       456 H~~~~~~~~d~i~vl------~~G~i~~  477 (478)
                      |+++.++.||+|++|      ++|+++.
T Consensus       891 H~~~~i~~aD~ii~Lgp~~G~~~G~Iv~  918 (943)
T PRK00349        891 HNLDVIKTADWIIDLGPEGGDGGGEIVA  918 (943)
T ss_pred             cCHHHHHhCCEEEEecCCcCCCCCEEEE
Confidence            999999999999999      6899875

>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.91  E-value=4e-22  Score=192.31  Aligned_cols=210  Identities=22%  Similarity=0.338  Sum_probs=197.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 048556            4 WIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLL   83 (478)
Q Consensus         4 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   83 (478)
                      ..+.+.++..++|.++++|+++.|..+|+++ ++|++++|+++|++.+++.+...+..++..+..+++.++++++.+|.+
T Consensus        65 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  143 (275)
T PF00664_consen   65 SSRISQRIRKDLRKRLFEKLLRLPYSYFDKN-SSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKL  143 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-cccccccccccccccccccccccccccccccchhhhhhhccccccccc
Confidence            3578899999999999999999999999998 899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           84 TLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLA  163 (478)
Q Consensus        84 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  163 (478)
                      +++++++.|+.+++..++.++.++..++.++..++..+.+.|.++|+++||+||.|+.+.+++++..++..+...+..+.
T Consensus       144 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  223 (275)
T PF00664_consen  144 ALILLIILPLLFLISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKI  223 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhhhHhhhhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHH
Q 048556          164 AGLGFGAFTFVAFSSYSLAIWFGGKM-ILEKGYKGGDVINVIFCVMIGSMSL  214 (478)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~l~~g~~l-v~~g~ls~G~l~~~~~~~~~~~~~l  214 (478)
                      .........++..+..++++++|+++ +.+|.+++|+++++..+......|+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl  275 (275)
T PF00664_consen  224 QALLSSISQFISYLSIVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL  275 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence            99999999999999899999999999 9999999999999988888777664

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.91  E-value=2.2e-24  Score=202.55  Aligned_cols=172  Identities=19%  Similarity=0.225  Sum_probs=120.9

Q ss_pred             cccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCC-CHHHhhcceEEEecCCCCCcccHHHHH
Q 048556          279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEF-QLKWIRGKIGLVSQEPVLFTSSIKDNI  357 (478)
Q Consensus       279 l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~-~~~~~r~~i~~v~Q~~~lf~~ti~eNl  357 (478)
                      ++++++++.+| +.+|+||||||||||+..|.-....... ....|..+.++ ....-...|.+.+|+..++.     | 
T Consensus        12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~-   83 (198)
T cd03276          12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N-   83 (198)
T ss_pred             eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C-
Confidence            35677888877 7799999999999999999744332211 01112211111 00111355788888776655     2 


Q ss_pred             hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH----cCCCCEEEEeCCCCCCCHH
Q 048556          358 NYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI----LKDPRILLLDEATSALDAE  433 (478)
Q Consensus       358 ~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal----l~~~~ililDEpts~LD~~  433 (478)
                          + ..+.+      ...+.+++..     .....+...+||+|||||++||||+    +.+|+++||||||++||..
T Consensus        84 ----~-~~~~~------~~~~~~~l~~-----~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~  147 (198)
T cd03276          84 ----P-LCVLS------QDMARSFLTS-----NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMV  147 (198)
T ss_pred             ----c-CCHHH------HHHHHHHhcc-----ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHH
Confidence                1 11111      1223344443     2234556789999999999999999    6899999999999999999


Q ss_pred             HHHHHHHHHHHhcC----CCeEEEEecCchhhhhcCEEEEEeCCE
Q 048556          434 SERVVQEALDKIMI----NRTTVIVAHRLSTVRNADLIAVIHQGK  474 (478)
Q Consensus       434 ~~~~i~~~l~~~~~----~~t~i~itH~~~~~~~~d~i~vl~~G~  474 (478)
                      +...+.+.|++...    .+|++++||+++.+..+|+|.+|..|+
T Consensus       148 ~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~  192 (198)
T cd03276         148 NRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD  192 (198)
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence            99999999988642    258999999999999999999998764

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.91  E-value=3.6e-24  Score=214.26  Aligned_cols=173  Identities=23%  Similarity=0.424  Sum_probs=136.6

Q ss_pred             cccccceeee-----cCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCC-CCc
Q 048556          277 QIFNGFSLSI-----PSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPV-LFT  350 (478)
Q Consensus       277 ~~l~~is~~i-----~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~-lf~  350 (478)
                      ..+.++.+++     ..||+++++||||-||||++++|+|.++|++|+    ..          .-.++|=||--. -|+
T Consensus       350 k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~----------~~~vSyKPQyI~~~~~  415 (591)
T COG1245         350 KTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EE----------DLKVSYKPQYISPDYD  415 (591)
T ss_pred             eecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cc----------cceEeecceeecCCCC
Confidence            3455666664     567899999999999999999999999999997    11          236889999432 389


Q ss_pred             ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Q 048556          351 SSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL  430 (478)
Q Consensus       351 ~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~L  430 (478)
                      ||+++-+.-..+....+...+       .+.+  -|-.++..+.....+|||||.||+|||-||.+++++++||||++.|
T Consensus       416 gtV~~~l~~~~~~~~~~s~~~-------~ei~--~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~L  486 (591)
T COG1245         416 GTVEDLLRSAIRSAFGSSYFK-------TEIV--KPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYL  486 (591)
T ss_pred             CcHHHHHHHhhhhhcccchhH-------Hhhc--CccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhc
Confidence            999998875444311111110       0111  1445666667778899999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeC
Q 048556          431 DAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQ  472 (478)
Q Consensus       431 D~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~  472 (478)
                      |.+.+-.+.+.|++..  .++|.++|.|++..+.. +||++|++.
T Consensus       487 DvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G  531 (591)
T COG1245         487 DVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG  531 (591)
T ss_pred             cHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence            9999999999999875  46899999999999988 899999963

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=1.1e-23  Score=213.67  Aligned_cols=194  Identities=25%  Similarity=0.350  Sum_probs=161.4

Q ss_pred             CccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhc
Q 048556          258 RGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRG  337 (478)
Q Consensus       258 ~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~  337 (478)
                      +..+++.+|+|.|+..+ .+.+.+++++++.-+.+++||++|+||||+++++.+-..|..|.+.+.+           |.
T Consensus       360 ~p~l~i~~V~f~y~p~~-y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~  427 (582)
T KOG0062|consen  360 PPNLRISYVAFEYTPSE-YQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RL  427 (582)
T ss_pred             CCeeEEEeeeccCCCcc-hhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cc
Confidence            45799999999997532 2799999999999999999999999999999999999999999887743           67


Q ss_pred             ceEEEecCCC-CCcc--cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCC-CCCChHHHHHHHHHHH
Q 048556          338 KIGLVSQEPV-LFTS--SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHG-TQLSGGQKQRIAIARA  413 (478)
Q Consensus       338 ~i~~v~Q~~~-lf~~--ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g-~~LSgGq~Qrl~lARa  413 (478)
                      +++|..|.-. .++-  +..|-+.--.|..+++|+.+.|...|+           +..+.-.. ..||||||-|+++|-.
T Consensus       428 ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl-----------~g~la~~si~~LSGGQKsrvafA~~  496 (582)
T KOG0062|consen  428 RIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGL-----------SGELALQSIASLSGGQKSRVAFAAC  496 (582)
T ss_pred             eecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCC-----------CchhhhccccccCCcchhHHHHHHH
Confidence            8999999653 3332  233333333466688898888766544           44443333 6799999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEe
Q 048556          414 ILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLV  476 (478)
Q Consensus       414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~  476 (478)
                      .+.+|.+|+|||||+.||.++-..+.++|+.+.  .-||+|||+.++++. |+.+.+.++|++.
T Consensus       497 ~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~--GGVv~VSHd~~fi~~~c~E~Wvve~g~vt  558 (582)
T KOG0062|consen  497 TWNNPHLLVLDEPTNHLDRDSLGALAKALKNFN--GGVVLVSHDEEFISSLCKELWVVEDGKVT  558 (582)
T ss_pred             hcCCCcEEEecCCCccccHHHHHHHHHHHHhcC--CcEEEEECcHHHHhhcCceeEEEcCCcEE
Confidence            999999999999999999999999999998864  479999999999998 9999999999985

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.91  E-value=2.6e-23  Score=231.95  Aligned_cols=90  Identities=32%  Similarity=0.567  Sum_probs=82.4

Q ss_pred             Cccc-cccCCCCCCChHHHHHHHHHHHHcC---CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh
Q 048556          388 GLDT-MVGEHGTQLSGGQKQRIAIARAILK---DPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVR  462 (478)
Q Consensus       388 g~~t-~~~~~g~~LSgGq~Qrl~lARall~---~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~  462 (478)
                      |++. .+++...+|||||+||++|||+|++   +|+++||||||++||+.+.+.+.+.|+++. ++.|+|+|+|+++.++
T Consensus       816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~  895 (924)
T TIGR00630       816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK  895 (924)
T ss_pred             CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence            6665 4788899999999999999999997   599999999999999999999999998875 4789999999999998


Q ss_pred             hcCEEEEE------eCCEEee
Q 048556          463 NADLIAVI------HQGKLVE  477 (478)
Q Consensus       463 ~~d~i~vl------~~G~i~~  477 (478)
                      .||+|++|      ++|++++
T Consensus       896 ~aD~ii~Lgp~~G~~gG~iv~  916 (924)
T TIGR00630       896 TADYIIDLGPEGGDGGGTIVA  916 (924)
T ss_pred             hCCEEEEecCCccCCCCEEEE
Confidence            99999999      7899875

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.90  E-value=5.3e-23  Score=209.89  Aligned_cols=211  Identities=25%  Similarity=0.353  Sum_probs=140.8

Q ss_pred             ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEEC--CeecCCCCHHHhh
Q 048556          259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID--GVNLKEFQLKWIR  336 (478)
Q Consensus       259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~--g~~~~~~~~~~~r  336 (478)
                      ..+.++|++++|.+   .+.++|.+|++.+|+.+||+|+|||||||+++.+.|-..|..-++.+-  ..++..-+.+.+.
T Consensus        74 ~dvk~~sls~s~~g---~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~  150 (614)
T KOG0927|consen   74 RDVKIESLSLSFHG---VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQ  150 (614)
T ss_pred             ccceeeeeeeccCC---ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHH
Confidence            46999999999974   579999999999999999999999999999999999998866544321  1111110111111


Q ss_pred             cceEEEecCCCCCcccHHHHHhcCCCCCCHH---HHHHHHHHhc-------HHHHHHhCCCCc-cccccCCCCCCChHHH
Q 048556          337 GKIGLVSQEPVLFTSSIKDNINYGKDGASIA---EIMAAAELAN-------AAKFIDSLPQGL-DTMVGEHGTQLSGGQK  405 (478)
Q Consensus       337 ~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~---~~~~a~~~~~-------~~~~i~~lp~g~-~t~~~~~g~~LSgGq~  405 (478)
                      .-+-.+.++.. =-.--.|++.-.+++...+   ++++.+...+       +...+..+  |. ..........|||||+
T Consensus       151 ~v~~~~~~e~~-rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~gl--gf~~~m~~k~~~~~SgGwr  227 (614)
T KOG0927|consen  151 AVVMETDHERK-RLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGL--GFLSEMQDKKVKDLSGGWR  227 (614)
T ss_pred             HHhhhhHHHHH-HHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhc--CCCHhHHHHHhhccCchHH
Confidence            00000000000 0001123333322221111   1222111111       11122222  33 2344556789999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEe
Q 048556          406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLV  476 (478)
Q Consensus       406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~  476 (478)
                      .|++|||||+.+|++|+|||||++||.++...+.+.|.+.... ++++++|.-.++.. |..|+-|++++.+
T Consensus       228 mR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~  298 (614)
T KOG0927|consen  228 MRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLI  298 (614)
T ss_pred             HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheeccccee
Confidence            9999999999999999999999999999999999999875332 89999999999988 9999999998843

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.89  E-value=3.9e-23  Score=205.32  Aligned_cols=191  Identities=28%  Similarity=0.392  Sum_probs=146.3

Q ss_pred             ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556          259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK  338 (478)
Q Consensus       259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~  338 (478)
                      .-+-+.||+|.|++.  .|.+++++|-|.--..+|||||||.|||||+++|.|-++|++|+.+=|           .|-+
T Consensus       585 PvLGlH~VtFgy~gq--kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-----------hrL~  651 (807)
T KOG0066|consen  585 PVLGLHDVTFGYPGQ--KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-----------HRLR  651 (807)
T ss_pred             CeeecccccccCCCC--CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-----------ceee
Confidence            357889999999864  689999999999999999999999999999999999999999987532           3557


Q ss_pred             eEEEecCCC--CC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556          339 IGLVSQEPV--LF-TSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL  415 (478)
Q Consensus       339 i~~v~Q~~~--lf-~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall  415 (478)
                      ||+..|...  |= ..|-.|-+.-.. +...++-.+++..-|+..-       -.|   -....|||||+-|+++|-.-+
T Consensus       652 iG~FdQh~~E~L~~Eetp~EyLqr~F-Nlpyq~ARK~LG~fGL~sH-------AHT---ikikdLSGGQKaRValaeLal  720 (807)
T KOG0066|consen  652 IGWFDQHANEALNGEETPVEYLQRKF-NLPYQEARKQLGTFGLASH-------AHT---IKIKDLSGGQKARVALAELAL  720 (807)
T ss_pred             eechhhhhHHhhccccCHHHHHHHhc-CCChHHHHHHhhhhhhhhc-------cce---EeeeecCCcchHHHHHHHHhc
Confidence            999998653  22 337777765433 2334444444433333211       011   134689999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhc-CEEEEEeCCEE
Q 048556          416 KDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNA-DLIAVIHQGKL  475 (478)
Q Consensus       416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~-d~i~vl~~G~i  475 (478)
                      +.|+||||||||.+||.++-..+-++|....  ..||+|||+-..+... =..+|+++-.|
T Consensus       721 ~~PDvlILDEPTNNLDIESIDALaEAIney~--GgVi~VsHDeRLi~eT~C~LwVvE~Q~i  779 (807)
T KOG0066|consen  721 GGPDVLILDEPTNNLDIESIDALAEAINEYN--GGVIMVSHDERLIVETDCNLWVVENQGI  779 (807)
T ss_pred             CCCCEEEecCCCCCcchhhHHHHHHHHHhcc--CcEEEEecccceeeecCceEEEEccCCh
Confidence            9999999999999999999999999998864  4799999998887652 24455555433

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.89  E-value=8.1e-24  Score=214.73  Aligned_cols=187  Identities=28%  Similarity=0.395  Sum_probs=131.5

Q ss_pred             ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556          259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK  338 (478)
Q Consensus       259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~  338 (478)
                      .+|..+|++.+|.+   +..|++-++++..|..+|+|||||+|||||+|+|+.      |+|.....+      +++|..
T Consensus        79 ~Di~~~~fdLa~G~---k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve------qE~~g~  143 (582)
T KOG0062|consen   79 KDIHIDNFDLAYGG---KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE------QEVRGD  143 (582)
T ss_pred             cceeeeeeeeeecc---hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch------hheecc
Confidence            47999999999964   579999999999999999999999999999999987      555443322      111111


Q ss_pred             eEEEecCCCCCcccHHHHHhcCCCCC----CHHHHHHHHHHhcHHHHHHhCCCCcccccc-CCCCCCChHHHHHHHHHHH
Q 048556          339 IGLVSQEPVLFTSSIKDNINYGKDGA----SIAEIMAAAELANAAKFIDSLPQGLDTMVG-EHGTQLSGGQKQRIAIARA  413 (478)
Q Consensus       339 i~~v~Q~~~lf~~ti~eNl~~~~~~~----~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~-~~g~~LSgGq~Qrl~lARa  413 (478)
                      -....| ..+-.+|-+.-+..-.+..    +.+|+..        +.+..+  |.....- ..-..||||=|-|++||||
T Consensus       144 ~t~~~~-~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~--------~~L~gl--GFt~emq~~pt~slSGGWrMrlaLARA  212 (582)
T KOG0062|consen  144 DTEALQ-SVLESDTERLDFLAEEKELLAGLTLEEIYD--------KILAGL--GFTPEMQLQPTKSLSGGWRMRLALARA  212 (582)
T ss_pred             chHHHh-hhhhccHHHHHHHHhhhhhhccchHHHHHH--------HHHHhC--CCCHHHHhccccccCcchhhHHHHHHH
Confidence            111111 1123344444443222110    1223222        022233  4443332 3357899999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCC
Q 048556          414 ILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQG  473 (478)
Q Consensus       414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G  473 (478)
                      |+.+||+|+|||||+.||..+-..+.+-|..+.  .|+|+|||+-+++.. |..|+.+++-
T Consensus       213 lf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~liVSHDr~FLn~V~tdIIH~~~~  271 (582)
T KOG0062|consen  213 LFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSLIVSHDRNFLNTVCTDIIHLENL  271 (582)
T ss_pred             HhcCCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEEEEeccHHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999998753  799999999999987 7777666543

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.89  E-value=3.2e-23  Score=188.74  Aligned_cols=209  Identities=21%  Similarity=0.347  Sum_probs=159.0

Q ss_pred             EEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC----CccEEEECCeecCCCCHHHhh
Q 048556          262 ELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP----QAGEVLIDGVNLKEFQLKWIR  336 (478)
Q Consensus       262 ~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~----~~G~i~~~g~~~~~~~~~~~r  336 (478)
                      .++|++..+.... -..+.+++|++...||+-++||+||||||-+.|.++|..+.    +.-...+++.++-++++.+.|
T Consensus         5 DIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RR   84 (330)
T COG4170           5 DIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERR   84 (330)
T ss_pred             cccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhh
Confidence            3455554443211 23689999999999999999999999999999999999753    456677899999999988877


Q ss_pred             cc----eEEEecCCCCC---cccHHHHHhcCCCCCCH------------HHHHHHHHHhcHHHHHHhCCCCccccccCCC
Q 048556          337 GK----IGLVSQEPVLF---TSSIKDNINYGKDGASI------------AEIMAAAELANAAKFIDSLPQGLDTMVGEHG  397 (478)
Q Consensus       337 ~~----i~~v~Q~~~lf---~~ti~eNl~~~~~~~~~------------~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g  397 (478)
                      +-    |++++|+|.-.   +.+|-..+.-.-|.-+.            .+-.+.+.++|++|-=+        .....+
T Consensus        85 k~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkD--------IM~SYP  156 (330)
T COG4170          85 KLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--------IMRSYP  156 (330)
T ss_pred             hhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHH--------HHHhCc
Confidence            54    78999999643   22443333322232221            23334466666654211        112345


Q ss_pred             CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCE
Q 048556          398 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGK  474 (478)
Q Consensus       398 ~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~  474 (478)
                      .+|..||-|++-||.|+..+|++||-||||.++|+.|..+|+..|.++.+  +.|+++++|++..+.. ||+|-||--|+
T Consensus       157 ~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ  236 (330)
T COG4170         157 YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQ  236 (330)
T ss_pred             chhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecc
Confidence            67889999999999999999999999999999999999999999988864  5789999999999988 99999999998


Q ss_pred             EeeC
Q 048556          475 LVEK  478 (478)
Q Consensus       475 i~~~  478 (478)
                      -+|+
T Consensus       237 ~~ES  240 (330)
T COG4170         237 TVES  240 (330)
T ss_pred             cccc
Confidence            7763

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=99.88  E-value=5.9e-22  Score=179.96  Aligned_cols=204  Identities=26%  Similarity=0.354  Sum_probs=152.9

Q ss_pred             ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556          259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK  338 (478)
Q Consensus       259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~  338 (478)
                      ..|++.++.|+|+..  .|++-|+|++++.|..+.+||.||||||||+|+|.|-.-...|.|.++|.+.-.-..-+-...
T Consensus        12 ~aievsgl~f~y~~~--dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgd   89 (291)
T KOG2355|consen   12 FAIEVSGLQFKYKVS--DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGD   89 (291)
T ss_pred             ceEEEeccEEecccC--CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCc
Confidence            469999999999864  389999999999999999999999999999999999887778999999987532110011122


Q ss_pred             eEEEecCCC---CCc-------ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 048556          339 IGLVSQEPV---LFT-------SSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRI  408 (478)
Q Consensus       339 i~~v~Q~~~---lf~-------~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl  408 (478)
                      .+|+.-+-.   .+.       +--.+.+.++-....+++-++         .|.-    +|-.+.=+-..+|-|||+|+
T Consensus        90 l~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~---------LI~i----LDIdl~WRmHkvSDGqrRRV  156 (291)
T KOG2355|consen   90 LSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREK---------LIDI----LDIDLRWRMHKVSDGQRRRV  156 (291)
T ss_pred             eeEecccccccccccccccccccccHHHHHhhccCCChhHhhh---------hhhh----eeccceEEEeeccccchhhh
Confidence            444433211   111       111334444433222322211         1211    23334445578999999999


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          409 AIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       409 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      .||..|++.=++|+|||.|--||...+..+.+-+++.++  ++|+++.||=..-++. ..+++.+.+|+++.
T Consensus       157 QicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~  228 (291)
T KOG2355|consen  157 QICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVD  228 (291)
T ss_pred             HHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeee
Confidence            999999999999999999999999999999999988763  6899999999998887 89999999999874

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.88  E-value=4.9e-22  Score=183.44  Aligned_cols=85  Identities=25%  Similarity=0.310  Sum_probs=76.5

Q ss_pred             HHhCCCCccccccCCCCCCChHHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEec
Q 048556          382 IDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL----KDPRILLLDEATSALDAESERVVQEALDKIMI-NRTTVIVAH  456 (478)
Q Consensus       382 i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall----~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH  456 (478)
                      +..+|+|-.|++      |||||+||++|||++.    .+|+++++||||++||+.+.+.+.+.+.+..+ ++|+|++||
T Consensus        83 ~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH  156 (178)
T cd03239          83 YFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL  156 (178)
T ss_pred             eEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence            456788877776      9999999999999985    79999999999999999999999999988754 489999999


Q ss_pred             CchhhhhcCEEEEEeC
Q 048556          457 RLSTVRNADLIAVIHQ  472 (478)
Q Consensus       457 ~~~~~~~~d~i~vl~~  472 (478)
                      +++.+..+|+++.++.
T Consensus       157 ~~~~~~~adrvi~i~~  172 (178)
T cd03239         157 KKEMFENADKLIGVLF  172 (178)
T ss_pred             CHHHHhhCCeEEEEEE
Confidence            9999989999999975

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.86  E-value=6.4e-22  Score=186.31  Aligned_cols=142  Identities=13%  Similarity=0.139  Sum_probs=107.5

Q ss_pred             cccceeeecCCC-EEEEEcCCCCChHHHHHHHh--------ccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCC
Q 048556          279 FNGFSLSIPSGT-TAALVGQSGSGKSTVISLIE--------RFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLF  349 (478)
Q Consensus       279 l~~is~~i~~G~-~~~ivG~sGsGKSTL~~ll~--------g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf  349 (478)
                      ..++||++++|+ .++|+||||||||||++.+.        |.+-|....+                 .++|++|.-..+
T Consensus        17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------------~~~~~~~~~~~l   79 (200)
T cd03280          17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------------SLPVFENIFADI   79 (200)
T ss_pred             eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------------cCcCccEEEEec
Confidence            457999999996 69999999999999999998        5554432111                 233433431100


Q ss_pred             cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCC
Q 048556          350 TSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA  429 (478)
Q Consensus       350 ~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~  429 (478)
                                                            |.+..+.++-.++|+||+|+..+++++ .+|+++++||||++
T Consensus        80 --------------------------------------g~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~g  120 (200)
T cd03280          80 --------------------------------------GDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSG  120 (200)
T ss_pred             --------------------------------------CchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCC
Confidence                                                  111112233468999999999999985 89999999999999


Q ss_pred             CCHHHHHHHHH-HHHHhc-CCCeEEEEecCchhhhhcCEEEEEeCCEEe
Q 048556          430 LDAESERVVQE-ALDKIM-INRTTVIVAHRLSTVRNADLIAVIHQGKLV  476 (478)
Q Consensus       430 LD~~~~~~i~~-~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl~~G~i~  476 (478)
                      +|+.+...+.. .++.+. .+.|+|++||+.+..+.||++.+|++|+++
T Consensus       121 lD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~  169 (200)
T cd03280         121 TDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASME  169 (200)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEE
Confidence            99999988865 466554 368999999997777779999999999985

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.86  E-value=6.4e-21  Score=188.37  Aligned_cols=76  Identities=18%  Similarity=0.268  Sum_probs=70.1

Q ss_pred             CCChHHHHHHHHHHHHcC----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCE
Q 048556          399 QLSGGQKQRIAIARAILK----DPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGK  474 (478)
Q Consensus       399 ~LSgGq~Qrl~lARall~----~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~  474 (478)
                      .|||||+||+++||+++.    +|++++|||||++||+.+...+.+.+++..+++|+|++||+++....||++++|++|.
T Consensus       170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~~  249 (276)
T cd03241         170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKEV  249 (276)
T ss_pred             hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEec
Confidence            499999999999997653    9999999999999999999999999998877889999999999888899999998863

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.85  E-value=3.9e-21  Score=182.51  Aligned_cols=180  Identities=15%  Similarity=0.163  Sum_probs=113.1

Q ss_pred             ccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh-h-----cceEEEecCCCCCccc-
Q 048556          280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI-R-----GKIGLVSQEPVLFTSS-  352 (478)
Q Consensus       280 ~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r-----~~i~~v~Q~~~lf~~t-  352 (478)
                      +++.+++.+| ..+|+||||||||||+.+|.-..-...... ....     ..+++ +     ..|-...+...   .. 
T Consensus        15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~-~r~~-----~~~~~i~~g~~~~~v~~~~~~~~---~~~   84 (213)
T cd03277          15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL-GRAK-----KVGEFVKRGCDEGTIEIELYGNP---GNI   84 (213)
T ss_pred             ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc-cccc-----CHHHHhhCCCCcEEEEEEEEeCC---Ccc
Confidence            4556666554 668999999999999999866552211100 0000     00111 0     11111111100   01 


Q ss_pred             HHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH----HcCCCCEEEEeCCCC
Q 048556          353 IKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA----ILKDPRILLLDEATS  428 (478)
Q Consensus       353 i~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa----ll~~~~ililDEpts  428 (478)
                      ..+|+++.   .+.+.+.+.+..... +.+..+|.+.+. -..+...||||||||+.+|++    ++.+|+++++||||+
T Consensus        85 ~~~n~~~~---~~q~~~~~~~~~~~~-e~l~~~~~~~~~-~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~  159 (213)
T cd03277          85 QVDNLCQF---LPQDRVGEFAKLSPI-ELLVKFREGEQL-QELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQ  159 (213)
T ss_pred             ccCCceEE---EchHHHHHHHhCChH-hHheeeecCCCc-cccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccc
Confidence            23344322   133444444444332 455566665543 255778999999999887754    458999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhcC--C-CeEEEEecCchhh-hhcC--EEEEEeCCE
Q 048556          429 ALDAESERVVQEALDKIMI--N-RTTVIVAHRLSTV-RNAD--LIAVIHQGK  474 (478)
Q Consensus       429 ~LD~~~~~~i~~~l~~~~~--~-~t~i~itH~~~~~-~~~d--~i~vl~~G~  474 (478)
                      +||+.+++.+.+.+.+..+  + .|+|++||++... ..+|  +|+++++|+
T Consensus       160 ~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~  211 (213)
T cd03277         160 GMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP  211 (213)
T ss_pred             cCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence            9999999999999988753  3 4799999998554 3454  899999997

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.83  E-value=1.6e-20  Score=188.21  Aligned_cols=188  Identities=21%  Similarity=0.384  Sum_probs=136.6

Q ss_pred             eEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeec-----CCCCHHHhh---
Q 048556          265 DIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNL-----KEFQLKWIR---  336 (478)
Q Consensus       265 ~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~-----~~~~~~~~r---  336 (478)
                      ++.-+|..+  ...|..+- ..++|+.+||+||||-||||-+|+|+|...|.=|+-  ++.+-     ..+.-.++.   
T Consensus        79 e~vHRYg~N--gFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp~wdeVi~~FrGtELq~YF  153 (591)
T COG1245          79 EVVHRYGVN--GFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPPSWDEVIKRFRGTELQNYF  153 (591)
T ss_pred             cceeeccCC--ceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCCCHHHHHHHhhhhHHHHHH
Confidence            355677532  23444432 457999999999999999999999999999987753  33110     111111110   


Q ss_pred             -----------cceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556          337 -----------GKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK  405 (478)
Q Consensus       337 -----------~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~  405 (478)
                                 .++-||.--|..+.||+.|-+.-.+.            .-..++.++.|  +++..++....+|||||-
T Consensus       154 ~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de------------~g~~devve~l--~L~nvl~r~v~~LSGGEL  219 (591)
T COG1245         154 KKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDE------------RGKFDEVVERL--GLENVLDRDVSELSGGEL  219 (591)
T ss_pred             HHHHcCCcceecchHHHHHHHHHhcchHHHHHHhhhh------------cCcHHHHHHHh--cchhhhhhhhhhcCchHH
Confidence                       11223333445556666665543221            11234556666  777788888999999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchhhhh-cCEEEEEe
Q 048556          406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI-NRTTVIVAHRLSTVRN-ADLIAVIH  471 (478)
Q Consensus       406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-~d~i~vl~  471 (478)
                      ||+|||-|++++++++++|||||-||...+-...+.++++.+ +++||+|-|++..+.. +|.|.++-
T Consensus       220 Qr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y  287 (591)
T COG1245         220 QRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY  287 (591)
T ss_pred             HHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence            999999999999999999999999999999999999999876 6999999999999988 89988874

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.83  E-value=1.4e-20  Score=209.41  Aligned_cols=199  Identities=25%  Similarity=0.423  Sum_probs=161.9

Q ss_pred             CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC---CccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc-
Q 048556          276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP---QAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-  351 (478)
Q Consensus       276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~---~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-  351 (478)
                      .++|+|++.-++||+.+.+.||+|||||||++.++|-.+.   ..|+|.+||.+.+++-+   ++.++|++|+..-|+. 
T Consensus       128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l  204 (1391)
T KOG0065|consen  128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL  204 (1391)
T ss_pred             ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence            4699999999999999999999999999999999998754   35799999999988765   7889999999988876 


Q ss_pred             cHHHHHhcCC----CCCCHHHHHHHHHHhcHHHH---HHhCCCCccccccCC-CCCCChHHHHHHHHHHHHcCCCCEEEE
Q 048556          352 SIKDNINYGK----DGASIAEIMAAAELANAAKF---IDSLPQGLDTMVGEH-GTQLSGGQKQRIAIARAILKDPRILLL  423 (478)
Q Consensus       352 ti~eNl~~~~----~~~~~~~~~~a~~~~~~~~~---i~~lp~g~~t~~~~~-g~~LSgGq~Qrl~lARall~~~~ilil  423 (478)
                      |+||-+.|..    |....+++.+..+.+...|.   +-.|....||.+|.. ....|||||.|+++|-+++.+|+++++
T Consensus       205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~  284 (1391)
T KOG0065|consen  205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFW  284 (1391)
T ss_pred             EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeee
Confidence            9999999863    21111222222222112222   235556789999865 478999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCch--hhhhcCEEEEEeCCEEee
Q 048556          424 DEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLS--TVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       424 DEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~--~~~~~d~i~vl~~G~i~~  477 (478)
                      ||+|.|||..|.-+|.++|+.+.+  +.|.++.=|+.+  .....|+|.+|.+|+++-
T Consensus       285 De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy  342 (1391)
T KOG0065|consen  285 DEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIY  342 (1391)
T ss_pred             ecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEE
Confidence            999999999999999999998754  678888888875  456689999999999873

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.82  E-value=6.7e-20  Score=181.80  Aligned_cols=178  Identities=25%  Similarity=0.386  Sum_probs=137.9

Q ss_pred             CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhcc--------CCCCccEEEECCeecCCCCHHHhhcceEEEecCCC
Q 048556          276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERF--------YDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPV  347 (478)
Q Consensus       276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~--------~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~  347 (478)
                      .++|+|+||+|++|+.++|+|+|||||||++++++|.        |.|++|.|.+--..+           -+.+|-+-.
T Consensus       396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~-----------~a~iPge~E  464 (593)
T COG2401         396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV-----------SALIPGEYE  464 (593)
T ss_pred             eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch-----------hhccCcccc
Confidence            4789999999999999999999999999999999997        689999997632221           234554321


Q ss_pred             -CCcc-cHHHHHhcCCCCCCH-HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEe
Q 048556          348 -LFTS-SIKDNINYGKDGASI-AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLD  424 (478)
Q Consensus       348 -lf~~-ti~eNl~~~~~~~~~-~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililD  424 (478)
                       -|.+ |+-|.+.-   ...| .--.+.+..+|+.|.+.         --.....||.|||-|..||+++..+|.+++.|
T Consensus       465 p~f~~~tilehl~s---~tGD~~~AveILnraGlsDAvl---------yRr~f~ELStGQKeR~KLAkllaerpn~~~iD  532 (593)
T COG2401         465 PEFGEVTILEHLRS---KTGDLNAAVEILNRAGLSDAVL---------YRRKFSELSTGQKERAKLAKLLAERPNVLLID  532 (593)
T ss_pred             cccCchhHHHHHhh---ccCchhHHHHHHHhhccchhhh---------hhccHhhcCcchHHHHHHHHHHhcCCCcEEhh
Confidence             2444 88888742   1222 22233455555544321         12345789999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh--cCEEEEEeCCEEe
Q 048556          425 EATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN--ADLIAVIHQGKLV  476 (478)
Q Consensus       425 Epts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~--~d~i~vl~~G~i~  476 (478)
                      |--|.||+.|...+...|.++.  .+.|.+++|||.+....  =|+++.+.-|+..
T Consensus       533 EF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~  588 (593)
T COG2401         533 EFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVP  588 (593)
T ss_pred             hhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence            9999999999999999999886  57899999999999877  3999888777653

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.82  E-value=3.9e-20  Score=168.31  Aligned_cols=137  Identities=23%  Similarity=0.279  Sum_probs=101.2

Q ss_pred             ceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCC
Q 048556          282 FSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGK  361 (478)
Q Consensus       282 is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~  361 (478)
                      .+..+.++..+.|+|||||||||+++.+....-..+|.+... .+.         +.=.++|+...-|            
T Consensus        14 ~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~-~~~---------~~g~~~~~~~~~~------------   71 (162)
T cd03227          14 NDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRR-SGV---------KAGCIVAAVSAEL------------   71 (162)
T ss_pred             cEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhcc-Ccc---------cCCCcceeeEEEE------------
Confidence            445555667999999999999999999876665555554330 000         0001122211111            


Q ss_pred             CCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC----CCCEEEEeCCCCCCCHHHHHH
Q 048556          362 DGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK----DPRILLLDEATSALDAESERV  437 (478)
Q Consensus       362 ~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~----~~~ililDEpts~LD~~~~~~  437 (478)
                                          +.       +.     ..||+||+||+++||++..    +|+++|+|||++++|+.....
T Consensus        72 --------------------i~-------~~-----~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~  119 (162)
T cd03227          72 --------------------IF-------TR-----LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQA  119 (162)
T ss_pred             --------------------eh-------he-----eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHH
Confidence                                00       00     1199999999999999986    789999999999999999999


Q ss_pred             HHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEEeC
Q 048556          438 VQEALDKIM-INRTTVIVAHRLSTVRNADLIAVIHQ  472 (478)
Q Consensus       438 i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl~~  472 (478)
                      +.+.+.+.. +++++|++||+++..+.+|+++.|+.
T Consensus       120 l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~  155 (162)
T cd03227         120 LAEAILEHLVKGAQVIVITHLPELAELADKLIHIKK  155 (162)
T ss_pred             HHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence            999998764 35899999999999999999999964

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.79  E-value=2.5e-19  Score=171.17  Aligned_cols=148  Identities=20%  Similarity=0.187  Sum_probs=108.2

Q ss_pred             CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE-EEecCCCCCcccHH
Q 048556          276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG-LVSQEPVLFTSSIK  354 (478)
Q Consensus       276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~-~v~Q~~~lf~~ti~  354 (478)
                      ..+.+|+++++++|++++|.|||||||||+++.++-.                     .+..++| |||.+...++  +.
T Consensus        17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~---------------------~~la~~g~~vpa~~~~~~--~~   73 (222)
T cd03285          17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI---------------------VLMAQIGCFVPCDSADIP--IV   73 (222)
T ss_pred             CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH---------------------HHHHHhCCCcCcccEEEe--cc
Confidence            4688999999999999999999999999999999811                     2234455 6666542221  11


Q ss_pred             HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH--cCCCCEEEEeCC---CCC
Q 048556          355 DNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI--LKDPRILLLDEA---TSA  429 (478)
Q Consensus       355 eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal--l~~~~ililDEp---ts~  429 (478)
                      +.+                        +..+  |++...   ...+|.|++|+..+++++  +.+|+++|||||   |++
T Consensus        74 ~~i------------------------l~~~--~l~d~~---~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~  124 (222)
T cd03285          74 DCI------------------------LARV--GASDSQ---LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTST  124 (222)
T ss_pred             cee------------------------Eeee--ccccch---hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCCh
Confidence            111                        1111  111111   357999999999999999  899999999999   999


Q ss_pred             CCHHHHHHHH-HHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEe
Q 048556          430 LDAESERVVQ-EALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLV  476 (478)
Q Consensus       430 LD~~~~~~i~-~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~  476 (478)
                      +|+....... +.+.+ ..++++|++||..+..+.||++..+++|++.
T Consensus       125 lD~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~  171 (222)
T cd03285         125 YDGFGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVT  171 (222)
T ss_pred             HHHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEE
Confidence            9998765433 44443 2468999999975555669999999999875

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.79  E-value=1.3e-18  Score=171.36  Aligned_cols=193  Identities=18%  Similarity=0.267  Sum_probs=118.3

Q ss_pred             cccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----------------------------------------Cc
Q 048556          279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----------------------------------------QA  317 (478)
Q Consensus       279 l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----------------------------------------~~  317 (478)
                      +++.++++.+| +.+|+|||||||||++.+|.-+...                                         ..
T Consensus        12 ~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~~~i~~~~~~~~~   90 (270)
T cd03242          12 YAELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRTSRDKELIRWGAEEAKISAVLERQGGELALELTIRSGGG   90 (270)
T ss_pred             cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHhcCCCCEEEEEEEEeCCCeEEEEEEEEcCCc
Confidence            34566777776 6889999999999999886533210                                         01


Q ss_pred             cEEEECCeecCC-CCHHHhhcceEEEecCCCCCcccHHHHHhcCC----C-CCCHHHHHHHHHHh-cHHHHHHhCCCCcc
Q 048556          318 GEVLIDGVNLKE-FQLKWIRGKIGLVSQEPVLFTSSIKDNINYGK----D-GASIAEIMAAAELA-NAAKFIDSLPQGLD  390 (478)
Q Consensus       318 G~i~~~g~~~~~-~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~----~-~~~~~~~~~a~~~~-~~~~~i~~lp~g~~  390 (478)
                      ..+.+||..++. -+..++-..+.+.|++..|+.++-.+...+-+    + .....+.++..+++ .-.+.+.+-|+.-+
T Consensus        91 ~~~~ing~~~~~l~~l~~~l~~i~~~~~~~~l~~~~p~~rr~~lD~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~d~  170 (270)
T cd03242          91 RKARLNGIKVRRLSDLLGVLNAVWFAPEDLELVKGSPADRRRFLDRLLGQLEPAYAHVLSEYQKALRQRNALLKGPHRDD  170 (270)
T ss_pred             eEEEECCeeccCHHHHhCcCcEEEEecchhhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCCChhh
Confidence            134466665544 11222334466777777777543333322211    1 11111222211111 00111111344433


Q ss_pred             cccc----CCCCCCChHHHHHHHHHHHHc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecC
Q 048556          391 TMVG----EHGTQLSGGQKQRIAIARAIL---------KDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHR  457 (478)
Q Consensus       391 t~~~----~~g~~LSgGq~Qrl~lARall---------~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~  457 (478)
                      ..+.    +....+|+||+|++++||+|+         .+|++++|||||++||+...+.+.+.+.+..   .+++++|+
T Consensus       171 l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~~~~  247 (270)
T cd03242         171 LLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QTFVTTTD  247 (270)
T ss_pred             eEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEEeCC
Confidence            3332    223458999999999999974         7999999999999999999999999997753   45566666


Q ss_pred             chhhhh-c---CEEEEEeCCEE
Q 048556          458 LSTVRN-A---DLIAVIHQGKL  475 (478)
Q Consensus       458 ~~~~~~-~---d~i~vl~~G~i  475 (478)
                      ...+.. |   ++++.+++|++
T Consensus       248 ~~~~~~~~~~~~~i~~l~~g~i  269 (270)
T cd03242         248 LADFDALWLRRAQIFRVDAGTL  269 (270)
T ss_pred             chhccchhccCccEEEEeCcEE
Confidence            555444 5   78999999986

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=99.78  E-value=6.6e-19  Score=170.36  Aligned_cols=180  Identities=18%  Similarity=0.248  Sum_probs=123.8

Q ss_pred             eeecCCCEEEEEcCCCCChHHHHHHHhccCCCCcc--EEEECCeecCCCCHHHhhcce---EEEecCCCCCcccHHHHHh
Q 048556          284 LSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG--EVLIDGVNLKEFQLKWIRGKI---GLVSQEPVLFTSSIKDNIN  358 (478)
Q Consensus       284 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G--~i~~~g~~~~~~~~~~~r~~i---~~v~Q~~~lf~~ti~eNl~  358 (478)
                      +.+.+||+++|+||+|+|||||++.+.+..+...+  .+.+-...-+..+..++.+.+   -++.+-.    .+......
T Consensus        11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~----~~~~~~~~   86 (249)
T cd01128          11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFD----EPPERHVQ   86 (249)
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCC----CCHHHHHH
Confidence            57899999999999999999999999999877533  323221111123444444433   1111100    01111111


Q ss_pred             cCCCCCCHHHHHHHHH---Hhc-----HHHHHHhCCCCccccccCCCCCCChHH--------HHHHHHHHHHcCCCCEEE
Q 048556          359 YGKDGASIAEIMAAAE---LAN-----AAKFIDSLPQGLDTMVGEHGTQLSGGQ--------KQRIAIARAILKDPRILL  422 (478)
Q Consensus       359 ~~~~~~~~~~~~~a~~---~~~-----~~~~i~~lp~g~~t~~~~~g~~LSgGq--------~Qrl~lARall~~~~ili  422 (478)
                      ..      ......++   ..|     +-|.+.++|+++++..++.|..+||||        +||+++||+++++++|.+
T Consensus        87 ~~------~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~  160 (249)
T cd01128          87 VA------EMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTI  160 (249)
T ss_pred             HH------HHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEE
Confidence            00      01111111   111     123577899999999999999999999        999999999999999999


Q ss_pred             EeCCCCCCCHHHHHH-HHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          423 LDEATSALDAESERV-VQEALDKIM-INRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       423 lDEpts~LD~~~~~~-i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      |  ||+.+|..++.. ++  +..+. ..+|.|++||++....++|.|.||+.|++.+
T Consensus       161 l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr~~  213 (249)
T cd01128         161 I--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTRKE  213 (249)
T ss_pred             e--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCccc
Confidence            9  999999765543 33  33333 4689999999999999999999999998653

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.76  E-value=4.1e-18  Score=198.60  Aligned_cols=186  Identities=19%  Similarity=0.287  Sum_probs=129.2

Q ss_pred             ccccceeeecCCCEEEEEcCCCCChHHHHHHHh----------ccCCCCccEEEECCeecCCCC----------HHHhhc
Q 048556          278 IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIE----------RFYDPQAGEVLIDGVNLKEFQ----------LKWIRG  337 (478)
Q Consensus       278 ~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~----------g~~~~~~G~i~~~g~~~~~~~----------~~~~r~  337 (478)
                      =|+|++.+|+-|..++|.|-||||||||++=.+          |. +.-+--|.+|-.++..-+          .+++|+
T Consensus      1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~-~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~ 1583 (1809)
T PRK00635       1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGP-SVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRN 1583 (1809)
T ss_pred             cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccc-cccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHH
Confidence            489999999999999999999999999997544          22 233445778777764321          234455


Q ss_pred             ceEEEec------CCCCCc-------------------------------------------------c-cHHHHHhcCC
Q 048556          338 KIGLVSQ------EPVLFT-------------------------------------------------S-SIKDNINYGK  361 (478)
Q Consensus       338 ~i~~v~Q------~~~lf~-------------------------------------------------~-ti~eNl~~~~  361 (478)
                      -++-.|+      .+..|+                                                 | +|.|-+.+  
T Consensus      1584 lFA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~m-- 1661 (1809)
T PRK00635       1584 FYASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQT-- 1661 (1809)
T ss_pred             HHhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcC--
Confidence            4443222      111121                                                 1 11111111  


Q ss_pred             CCCCHHHHHHHH----HHhcHHHHHHhCCCCccc-cccCCCCCCChHHHHHHHHHHHHcCC---CCEEEEeCCCCCCCHH
Q 048556          362 DGASIAEIMAAA----ELANAAKFIDSLPQGLDT-MVGEHGTQLSGGQKQRIAIARAILKD---PRILLLDEATSALDAE  433 (478)
Q Consensus       362 ~~~~~~~~~~a~----~~~~~~~~i~~lp~g~~t-~~~~~g~~LSgGq~Qrl~lARall~~---~~ililDEpts~LD~~  433 (478)
                         +.+|..+..    +.....+.+...  |+.. .+|+...+|||||.|||-||.-|.++   +.++||||||.+|++.
T Consensus      1662 ---tv~ea~~~F~~~~~i~~~L~~L~~v--GLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~ 1736 (1809)
T PRK00635       1662 ---PIEEVAETFPFLKKIQKPLQALIDN--GLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQ 1736 (1809)
T ss_pred             ---CHHHHHHHhhccHHHHHHHHHHHHc--CCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHH
Confidence               111111100    111112233444  5543 57999999999999999999999876   7899999999999999


Q ss_pred             HHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEEe
Q 048556          434 SERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIAVIH  471 (478)
Q Consensus       434 ~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl~  471 (478)
                      ..+.+++.++++. .+.|||+|.|++..++.||.|+-|.
T Consensus      1737 d~~~Ll~~l~~L~~~g~tvivieH~~~~i~~aD~iidlg 1775 (1809)
T PRK00635       1737 QKSALLVQLRTLVSLGHSVIYIDHDPALLKQADYLIEMG 1775 (1809)
T ss_pred             HHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhCCEEEEcC
Confidence            9999999998885 5799999999999999999999993

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.76  E-value=4.5e-18  Score=181.06  Aligned_cols=90  Identities=30%  Similarity=0.564  Sum_probs=80.8

Q ss_pred             Cccc-cccCCCCCCChHHHHHHHHHHHHcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh
Q 048556          388 GLDT-MVGEHGTQLSGGQKQRIAIARAILKDP---RILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVR  462 (478)
Q Consensus       388 g~~t-~~~~~g~~LSgGq~Qrl~lARall~~~---~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~  462 (478)
                      |+.. .+|+...+|||||.||+-||.-|.+++   -++||||||.||-.+..+++++.|.++- ++.|||+|-|+|+.++
T Consensus       810 GLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk  889 (935)
T COG0178         810 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIK  889 (935)
T ss_pred             CcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEe
Confidence            5543 679999999999999999999999988   8999999999999999999999998885 6899999999999999


Q ss_pred             hcCEEEEE------eCCEEee
Q 048556          463 NADLIAVI------HQGKLVE  477 (478)
Q Consensus       463 ~~d~i~vl------~~G~i~~  477 (478)
                      .||.|+-|      +.|+|+.
T Consensus       890 ~AD~IIDLGPeGG~~GG~iva  910 (935)
T COG0178         890 TADWIIDLGPEGGDGGGEIVA  910 (935)
T ss_pred             ecCEEEEcCCCCCCCCceEEE
Confidence            99999998      3356654

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.75  E-value=1.6e-18  Score=162.88  Aligned_cols=137  Identities=19%  Similarity=0.234  Sum_probs=95.8

Q ss_pred             cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc-cHHH
Q 048556          277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKD  355 (478)
Q Consensus       277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~e  355 (478)
                      ++++|++++.  |++++|+||||||||||+|+|+|...     +...|.++...         .+++|...+|.. |++|
T Consensus        15 ~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~~d   78 (199)
T cd03283          15 RVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRVSD   78 (199)
T ss_pred             eecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccchh
Confidence            5778876665  79999999999999999999987553     12345444221         256675567765 9999


Q ss_pred             HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHH
Q 048556          356 NINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE  435 (478)
Q Consensus       356 Nl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~  435 (478)
                      |+.++... ..++.      ..+.+.++.+.                            ..+|+++|+||||+++|+.+.
T Consensus        79 ~l~~~~s~-~~~e~------~~~~~iL~~~~----------------------------~~~p~llllDEp~~glD~~~~  123 (199)
T cd03283          79 DLRDGISY-FYAEL------RRLKEIVEKAK----------------------------KGEPVLFLLDEIFKGTNSRER  123 (199)
T ss_pred             ccccccCh-HHHHH------HHHHHHHHhcc----------------------------CCCCeEEEEecccCCCCHHHH
Confidence            99886532 12222      12344444431                            079999999999999999988


Q ss_pred             HHHHH-HHHHhc-CCCeEEEEecCchhhhhc
Q 048556          436 RVVQE-ALDKIM-INRTTVIVAHRLSTVRNA  464 (478)
Q Consensus       436 ~~i~~-~l~~~~-~~~t~i~itH~~~~~~~~  464 (478)
                      ..+.. .++.+. .+.|+|++||+++.+...
T Consensus       124 ~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~  154 (199)
T cd03283         124 QAASAAVLKFLKNKNTIGIISTHDLELADLL  154 (199)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEcCcHHHHHhh
Confidence            76654 455543 468999999999876543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.74  E-value=7.2e-18  Score=158.99  Aligned_cols=147  Identities=15%  Similarity=0.154  Sum_probs=98.4

Q ss_pred             cceeeecCCCEEEEEcCCCCChHHHHHHHhcc-CCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhc
Q 048556          281 GFSLSIPSGTTAALVGQSGSGKSTVISLIERF-YDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINY  359 (478)
Q Consensus       281 ~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~-~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~  359 (478)
                      ..++++.+|++++|+||||||||||++.+++. +.+..|...-          . .+..+++..|...-|.  ..+    
T Consensus        21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~----------~-~~~~i~~~dqi~~~~~--~~d----   83 (202)
T cd03243          21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP----------A-ESASIPLVDRIFTRIG--AED----   83 (202)
T ss_pred             eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc----------c-cccccCCcCEEEEEec--Ccc----
Confidence            34566778999999999999999999999943 2222332110          0 0122333322111110  000    


Q ss_pred             CCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHH
Q 048556          360 GKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQ  439 (478)
Q Consensus       360 ~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~  439 (478)
                                                      .+.++-..++++++| +..+.+++.+|+++|+||||+++|+.....+.
T Consensus        84 --------------------------------~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~  130 (202)
T cd03243          84 --------------------------------SISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIA  130 (202)
T ss_pred             --------------------------------cccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHH
Confidence                                            111222455666665 66667888999999999999999999887775


Q ss_pred             HH-HHHhc-CCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          440 EA-LDKIM-INRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       440 ~~-l~~~~-~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      .. ++.+. .+.++|++||+.+..+.++++..+++|++.+
T Consensus       131 ~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~  170 (202)
T cd03243         131 YAVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEE  170 (202)
T ss_pred             HHHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEE
Confidence            54 44443 4689999999999999999988888888753

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=99.72  E-value=5.1e-18  Score=141.82  Aligned_cols=76  Identities=16%  Similarity=0.130  Sum_probs=71.8

Q ss_pred             CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHH
Q 048556          276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKD  355 (478)
Q Consensus       276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~e  355 (478)
                      .++|++++|++++||.++|+||||||||||++++.      +|++.++|.|+..++.++.++.++++||+  +|.+||+|
T Consensus         2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~   73 (107)
T cd00820           2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRL   73 (107)
T ss_pred             ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHh
Confidence            46899999999999999999999999999999986      79999999999999988888889999998  99999999


Q ss_pred             HHhc
Q 048556          356 NINY  359 (478)
Q Consensus       356 Nl~~  359 (478)
                      ||.+
T Consensus        74 Ni~~   77 (107)
T cd00820          74 NIFL   77 (107)
T ss_pred             hcee
Confidence            9998

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.70  E-value=8.3e-17  Score=180.14  Aligned_cols=95  Identities=31%  Similarity=0.514  Sum_probs=84.8

Q ss_pred             HHHhCCCCcccc-ccCCCCCCChHHHHHHHHHHHHcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEec
Q 048556          381 FIDSLPQGLDTM-VGEHGTQLSGGQKQRIAIARAILKDP--RILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAH  456 (478)
Q Consensus       381 ~i~~lp~g~~t~-~~~~g~~LSgGq~Qrl~lARall~~~--~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH  456 (478)
                      ++..+  |++.. ++....+|||||+||++|||||..+|  +++||||||++||+.+.+.+.+.|+++. +++|||+|+|
T Consensus       470 ~L~~v--gL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeH  547 (924)
T TIGR00630       470 FLIDV--GLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEH  547 (924)
T ss_pred             hHhhc--cccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence            34444  66654 67889999999999999999999986  8999999999999999999999999885 4789999999


Q ss_pred             CchhhhhcCEEEEE------eCCEEee
Q 048556          457 RLSTVRNADLIAVI------HQGKLVE  477 (478)
Q Consensus       457 ~~~~~~~~d~i~vl------~~G~i~~  477 (478)
                      +++.++.||+|++|      ++|+|+.
T Consensus       548 d~~~i~~aD~vi~LgpgaG~~~G~Iv~  574 (924)
T TIGR00630       548 DEETIRAADYVIDIGPGAGIHGGEVVA  574 (924)
T ss_pred             CHHHHhhCCEEEEecccccCCCCEEee
Confidence            99999999999999      8999875

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.69  E-value=1.1e-16  Score=179.38  Aligned_cols=95  Identities=33%  Similarity=0.521  Sum_probs=85.5

Q ss_pred             HHHhCCCCcccc-ccCCCCCCChHHHHHHHHHHHHcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEec
Q 048556          381 FIDSLPQGLDTM-VGEHGTQLSGGQKQRIAIARAILKDP--RILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAH  456 (478)
Q Consensus       381 ~i~~lp~g~~t~-~~~~g~~LSgGq~Qrl~lARall~~~--~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH  456 (478)
                      +++.+  |++.. ++....+|||||+||++|||||..+|  +++||||||++||+...+.+.+.|+++. .++|||+|+|
T Consensus       472 ~L~~v--GL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH  549 (943)
T PRK00349        472 FLVDV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEH  549 (943)
T ss_pred             Hhhcc--ccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence            45555  77655 67889999999999999999999997  9999999999999999999999999886 4789999999


Q ss_pred             CchhhhhcCEEEEE------eCCEEee
Q 048556          457 RLSTVRNADLIAVI------HQGKLVE  477 (478)
Q Consensus       457 ~~~~~~~~d~i~vl------~~G~i~~  477 (478)
                      +++.+..||+|++|      ++|+++.
T Consensus       550 ~~~~i~~aD~vi~LgpgaG~~~G~iv~  576 (943)
T PRK00349        550 DEDTIRAADYIVDIGPGAGVHGGEVVA  576 (943)
T ss_pred             CHHHHHhCCEEEEeccccCCCCCEEee
Confidence            99999899999999      8899874

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=99.66  E-value=5.1e-16  Score=151.93  Aligned_cols=131  Identities=16%  Similarity=0.246  Sum_probs=96.4

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC-HHHhhcceEEEecCCCCCc-ccHHHHHhcCCCCCCHH
Q 048556          290 TTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ-LKWIRGKIGLVSQEPVLFT-SSIKDNINYGKDGASIA  367 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~-~~~~r~~i~~v~Q~~~lf~-~ti~eNl~~~~~~~~~~  367 (478)
                      ..++|+||+|||||||++.|+|++.|++|+|.++|+++...+ ..++...++++||... +. .++.+|.    |.    
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~-~~r~~v~~~~----~k----  182 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDV-GIRTDVLDGC----PK----  182 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccc-cccccccccc----hH----
Confidence            678999999999999999999999999999999999998765 5677778899999653 32 2333331    10    


Q ss_pred             HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC
Q 048556          368 EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI  447 (478)
Q Consensus       368 ~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~  447 (478)
                             ..+                             ...++|+  .+|+++++|||++      .+.+...++....
T Consensus       183 -------~~~-----------------------------~~~~i~~--~~P~villDE~~~------~e~~~~l~~~~~~  218 (270)
T TIGR02858       183 -------AEG-----------------------------MMMLIRS--MSPDVIVVDEIGR------EEDVEALLEALHA  218 (270)
T ss_pred             -------HHH-----------------------------HHHHHHh--CCCCEEEEeCCCc------HHHHHHHHHHHhC
Confidence                   000                             1445555  4999999999974      2334444444446


Q ss_pred             CCeEEEEecCchh--h------------hhcCEEEEEeCC
Q 048556          448 NRTTVIVAHRLST--V------------RNADLIAVIHQG  473 (478)
Q Consensus       448 ~~t~i~itH~~~~--~------------~~~d~i~vl~~G  473 (478)
                      +.|+|++||+.+.  +            ..+||+++|++|
T Consensus       219 G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~  258 (270)
T TIGR02858       219 GVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRR  258 (270)
T ss_pred             CCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecC
Confidence            8899999998665  3            337999999865

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=1.8e-16  Score=158.13  Aligned_cols=203  Identities=27%  Similarity=0.392  Sum_probs=132.9

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhcc--CCCCccEEEECCeecCCCCHHHh--
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGVNLKEFQLKWI--  335 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~--~~~~~G~i~~~g~~~~~~~~~~~--  335 (478)
                      +|.++|.+.+-.+   +..+-|-|+.|-.|..+++|||||-|||||++-|+.-  --|..=.+++..+.+..-+...+  
T Consensus       264 DIKiEnF~ISA~G---k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~t  340 (807)
T KOG0066|consen  264 DIKIENFDISAQG---KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDT  340 (807)
T ss_pred             cceeeeeeeeccc---ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHH
Confidence            4788888777643   4688999999999999999999999999999988753  22323334444433321111100  


Q ss_pred             -----hcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHH---HHHH-------hcHHHHHHhCCCCccccccCCC-CC
Q 048556          336 -----RGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMA---AAEL-------ANAAKFIDSLPQGLDTMVGEHG-TQ  399 (478)
Q Consensus       336 -----r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~---a~~~-------~~~~~~i~~lp~g~~t~~~~~g-~~  399 (478)
                           .++...+-.+..     +...+.-|...+ .|++.+   .++.       +.....+..|  |++....+++ ..
T Consensus       341 vl~aD~kRl~lLeee~~-----L~~q~e~Gd~ta-aErl~~v~~ELraiGA~sAEarARRILAGL--GFskEMQ~rPt~k  412 (807)
T KOG0066|consen  341 VLKADKKRLALLEEEAK-----LMSQIEEGDTTA-AERLKEVADELRAIGADSAEARARRILAGL--GFSKEMQERPTTK  412 (807)
T ss_pred             HHHhhHHHHHHHHHHHH-----HHHHHHcCchHH-HHHHHHHHHHHHHhccccchhHHHHHHhhc--CCChhHhcCCccc
Confidence                 001111111110     111111111100 111111   1111       2223345555  7776666655 67


Q ss_pred             CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 048556          400 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKL  475 (478)
Q Consensus       400 LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i  475 (478)
                      +|||=|.|++|||||+-.|-+|.|||||.+||.-..-.+-+.|..+  .+|.++|||+-.++.. |..|+.||+-++
T Consensus       413 FSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~qkL  487 (807)
T KOG0066|consen  413 FSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQKL  487 (807)
T ss_pred             cCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHHHHHhhhhhhhh
Confidence            9999999999999999999999999999999998887777777664  4799999999999988 999999987654

>TIGR00606 rad50 rad50

Probab=99.65  E-value=3.3e-16  Score=184.18  Aligned_cols=118  Identities=24%  Similarity=0.313  Sum_probs=104.3

Q ss_pred             CCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHH------HHHHHHHHcCCCCEE
Q 048556          348 LFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQ------RIAIARAILKDPRIL  421 (478)
Q Consensus       348 lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Q------rl~lARall~~~~il  421 (478)
                      .|+||++|||.+ .|+++++  +.+++.++.++|+..+|.| +|.++..| .|||||||      |++||||++.+|+++
T Consensus      1153 ~~~~~~~~~i~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~il 1227 (1311)
T TIGR00606      1153 TYRGQDIEYIEI-RSDADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCGII 1227 (1311)
T ss_pred             HcCccHHHHhhc-CCCCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCCCEE
Confidence            599999999999 8887766  6888899999999999999 99998876 89999999      999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHhc------CCCeEEEEecCchhhhh------cCEEEEE
Q 048556          422 LLDEATSALDAESERVVQEALDKIM------INRTTVIVAHRLSTVRN------ADLIAVI  470 (478)
Q Consensus       422 ilDEpts~LD~~~~~~i~~~l~~~~------~~~t~i~itH~~~~~~~------~d~i~vl  470 (478)
                      +|||||++||+.+...+.+.|..+.      .+.|+|+|||++.++..      +|+.+-+
T Consensus      1228 ~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~ 1288 (1311)
T TIGR00606      1228 ALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRL 1288 (1311)
T ss_pred             EeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeee
Confidence            9999999999999999998887752      25799999999998763      4565544

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.65  E-value=3.2e-16  Score=147.73  Aligned_cols=139  Identities=19%  Similarity=0.169  Sum_probs=97.6

Q ss_pred             CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE-EEecCCCCCcccHH
Q 048556          276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG-LVSQEPVLFTSSIK  354 (478)
Q Consensus       276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~-~v~Q~~~lf~~ti~  354 (478)
                      .++.+|++|++++|+.++|+|||||||||+++.++++.                     +..++| +||-..  ..-++.
T Consensus        16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~~   72 (204)
T cd03282          16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPIF   72 (204)
T ss_pred             cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccCh
Confidence            46899999999999999999999999999999998873                     122222 222211  111455


Q ss_pred             HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHH
Q 048556          355 DNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES  434 (478)
Q Consensus       355 eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~  434 (478)
                      |||...-                          +.+..+.++..++|+|++|+ ..+-++..+|++++||||++++|+..
T Consensus        73 d~I~~~~--------------------------~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~  125 (204)
T cd03282          73 NRLLSRL--------------------------SNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSAD  125 (204)
T ss_pred             hheeEec--------------------------CCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHH
Confidence            5553211                          11122334557899999975 55566788999999999999999986


Q ss_pred             HHHHHHH-HHHhc-CCCeEEEEecCchhhhhc
Q 048556          435 ERVVQEA-LDKIM-INRTTVIVAHRLSTVRNA  464 (478)
Q Consensus       435 ~~~i~~~-l~~~~-~~~t~i~itH~~~~~~~~  464 (478)
                      ...+... ++.+. .++++|++||+.+.++.+
T Consensus       126 ~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~  157 (204)
T cd03282         126 GFAISLAILECLIKKESTVFFATHFRDIAAIL  157 (204)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEECChHHHHHHh
Confidence            5554433 44443 478999999999887653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=99.64  E-value=1.2e-15  Score=152.34  Aligned_cols=181  Identities=22%  Similarity=0.393  Sum_probs=135.9

Q ss_pred             EECCCCCCCcccccceeeecCCC-----EEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEE
Q 048556          268 FSYPSRPGEQIFNGFSLSIPSGT-----TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLV  342 (478)
Q Consensus       268 ~~y~~~~~~~~l~~is~~i~~G~-----~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v  342 (478)
                      |.|++  .+..+.+..+.|+.|+     ++..+|+||.||||++++++|..+|++|.      ++..       =+++|=
T Consensus       343 y~Yp~--m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~-------lnVSyk  407 (592)
T KOG0063|consen  343 YSYPK--MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPV-------LNVSYK  407 (592)
T ss_pred             eccCc--ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------cccc-------cceecc
Confidence            56764  3467889999999886     78899999999999999999999998762      1112       247778


Q ss_pred             ecCCC-CCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEE
Q 048556          343 SQEPV-LFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRIL  421 (478)
Q Consensus       343 ~Q~~~-lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~il  421 (478)
                      ||... =|.+|+|+-+.        +.++.+.-.-.....+. -|-..+..+++...+|||||.||+|+|-+|=+.++++
T Consensus       408 pqkispK~~~tvR~ll~--------~kIr~ay~~pqF~~dvm-kpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvY  478 (592)
T KOG0063|consen  408 PQKISPKREGTVRQLLH--------TKIRDAYMHPQFVNDVM-KPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVY  478 (592)
T ss_pred             ccccCccccchHHHHHH--------HHhHhhhcCHHHHHhhh-hhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceE
Confidence            88543 47889887663        22222211111111111 1334566677788999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHh--cCCCeEEEEecCchhhhh-cCEEEEEeC
Q 048556          422 LLDEATSALDAESERVVQEALDKI--MINRTTVIVAHRLSTVRN-ADLIAVIHQ  472 (478)
Q Consensus       422 ilDEpts~LD~~~~~~i~~~l~~~--~~~~t~i~itH~~~~~~~-~d~i~vl~~  472 (478)
                      +.|||.+-||.+.+..--..+++.  ..++|-.+|-|++-..-. +||++|.+.
T Consensus       479 liDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G  532 (592)
T KOG0063|consen  479 LIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEG  532 (592)
T ss_pred             EecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEec
Confidence            999999999999888777777775  357899999999877655 999999864

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=99.62  E-value=9.9e-16  Score=145.80  Aligned_cols=147  Identities=20%  Similarity=0.237  Sum_probs=95.6

Q ss_pred             CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc-cHH
Q 048556          276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIK  354 (478)
Q Consensus       276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~  354 (478)
                      ..+.+|++++.++ ++++|+|||||||||++|.+++..-.  |+   .|..   .+.+  +..+++++|   +|.. ++.
T Consensus        18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~---vp~~--~~~i~~~~~---i~~~~~~~   83 (216)
T cd03284          18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSF---VPAS--KAEIGVVDR---IFTRIGAS   83 (216)
T ss_pred             ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCe---eccc--cceecceee---EeccCCch
Confidence            3578899999887 99999999999999999999875422  11   1111   1111  245666654   4443 566


Q ss_pred             HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH--cCCCCEEEEeCC---CCC
Q 048556          355 DNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI--LKDPRILLLDEA---TSA  429 (478)
Q Consensus       355 eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal--l~~~~ililDEp---ts~  429 (478)
                      ||+..+..                                       -=...+..+++++  ..+|++++||||   |++
T Consensus        84 ~~ls~g~s---------------------------------------~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~  124 (216)
T cd03284          84 DDLAGGRS---------------------------------------TFMVEMVETANILNNATERSLVLLDEIGRGTST  124 (216)
T ss_pred             hhhccCcc---------------------------------------hHHHHHHHHHHHHHhCCCCeEEEEecCCCCCCh
Confidence            66654421                                       1111122333333  469999999999   888


Q ss_pred             CCHHH-HHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEe
Q 048556          430 LDAES-ERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLV  476 (478)
Q Consensus       430 LD~~~-~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~  476 (478)
                      +|... ...+.+.+.+. .++|+|++||+.+..+.+|++..+++|++.
T Consensus       125 lD~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~  171 (216)
T cd03284         125 YDGLSIAWAIVEYLHEK-IGAKTLFATHYHELTELEGKLPRVKNFHVA  171 (216)
T ss_pred             HHHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhhcCCCeEEEEEE
Confidence            89865 24455555442 368999999998776667877666666653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=99.59  E-value=2.3e-15  Score=143.71  Aligned_cols=72  Identities=28%  Similarity=0.417  Sum_probs=59.1

Q ss_pred             CCChHHHHHHHHHHH----HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEE
Q 048556          399 QLSGGQKQRIAIARA----ILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVI  470 (478)
Q Consensus       399 ~LSgGq~Qrl~lARa----ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl  470 (478)
                      .||||||-+++||=-    -+.++|++|||||.++||......+.+.|++..++.-+|++||+...+..||+.+.+
T Consensus       136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v  211 (220)
T PF02463_consen  136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGV  211 (220)
T ss_dssp             GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            899999999999843    356789999999999999999999999999988788899999999999999998876

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>PRK00064 recF recombination protein F; Reviewed

Probab=99.58  E-value=4.8e-14  Score=144.37  Aligned_cols=76  Identities=26%  Similarity=0.358  Sum_probs=66.3

Q ss_pred             CCCChHHHHHHHHHHHHc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh---cC
Q 048556          398 TQLSGGQKQRIAIARAIL---------KDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN---AD  465 (478)
Q Consensus       398 ~~LSgGq~Qrl~lARall---------~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~---~d  465 (478)
                      ..+|.||+|++++|+++.         ++|++++||||+++||+...+.+.+.+.+.  ++.++++||+...+..   .+
T Consensus       272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~~  349 (361)
T PRK00064        272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLENA  349 (361)
T ss_pred             HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhccC
Confidence            589999999999999885         899999999999999999999999988653  3588999998876544   46


Q ss_pred             EEEEEeCCEE
Q 048556          466 LIAVIHQGKL  475 (478)
Q Consensus       466 ~i~vl~~G~i  475 (478)
                      +++.+++|++
T Consensus       350 ~i~~v~~G~i  359 (361)
T PRK00064        350 KIFHVEQGKI  359 (361)
T ss_pred             cEEEEeCCEE
Confidence            8999999997

>PHA02562 46 endonuclease subunit; Provisional

Probab=99.51  E-value=1.6e-14  Score=156.81  Aligned_cols=92  Identities=25%  Similarity=0.428  Sum_probs=81.9

Q ss_pred             HhCCCCccccccCCC------CCCChHHHHHHHHHHHHc----------CCCCEEEEeCCC-CCCCHHHHHHHHHHHHHh
Q 048556          383 DSLPQGLDTMVGEHG------TQLSGGQKQRIAIARAIL----------KDPRILLLDEAT-SALDAESERVVQEALDKI  445 (478)
Q Consensus       383 ~~lp~g~~t~~~~~g------~~LSgGq~Qrl~lARall----------~~~~ililDEpt-s~LD~~~~~~i~~~l~~~  445 (478)
                      ..+|+++++.+++.|      ..|||||+||++||||++          .+|+++|||||| ++||+.+...+.+.|.++
T Consensus       446 ~~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~  525 (562)
T PHA02562        446 FTLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL  525 (562)
T ss_pred             EEechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC
Confidence            356888888887777      789999999999999887          599999999998 789999999999999988


Q ss_pred             cCCCeEEEEecCchhhhhcCEEEEEeC-CEE
Q 048556          446 MINRTTVIVAHRLSTVRNADLIAVIHQ-GKL  475 (478)
Q Consensus       446 ~~~~t~i~itH~~~~~~~~d~i~vl~~-G~i  475 (478)
                       ++.|+|+|||++.....+|++++|++ |+.
T Consensus       526 -~~~~iiiish~~~~~~~~d~~~~l~~~~~~  555 (562)
T PHA02562        526 -KDTNVFVISHKDHDPQKFDRHLKMEKVGRF  555 (562)
T ss_pred             -CCCeEEEEECchhchhhhhcEEEEEEECCe
Confidence             67899999999988888999999986 543

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=99.50  E-value=4.8e-14  Score=131.08  Aligned_cols=70  Identities=19%  Similarity=0.219  Sum_probs=52.7

Q ss_pred             cCCCCCCChHHHHHHHHHHHHcC--CCCEEEEeCCCCCCCHHHHHHHHHH-HHHhc--CCCeEEEEecCchhhhhcCE
Q 048556          394 GEHGTQLSGGQKQRIAIARAILK--DPRILLLDEATSALDAESERVVQEA-LDKIM--INRTTVIVAHRLSTVRNADL  466 (478)
Q Consensus       394 ~~~g~~LSgGq~Qrl~lARall~--~~~ililDEpts~LD~~~~~~i~~~-l~~~~--~~~t~i~itH~~~~~~~~d~  466 (478)
                      .++..+||+|++|   +++++..  +|+++|+|||++++|+.....+... ++.+.  .++++|++||+++..+.+|+
T Consensus        56 ~~~~s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~  130 (185)
T smart00534       56 AQGLSTFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADE  130 (185)
T ss_pred             hccccHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhc
Confidence            3445678888887   4454444  9999999999999999977776544 45443  26899999999987666764

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=99.49  E-value=6.5e-13  Score=138.13  Aligned_cols=171  Identities=19%  Similarity=0.316  Sum_probs=119.6

Q ss_pred             CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECC---eecCC-----CCHHHhhcceEEEecCCC
Q 048556          276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG---VNLKE-----FQLKWIRGKIGLVSQEPV  347 (478)
Q Consensus       276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g---~~~~~-----~~~~~~r~~i~~v~Q~~~  347 (478)
                      ..+++++ |++.+|++++|+|+||+|||||+++|+|+++|+.|.|.+.|   .++.+     ++.+.+++.+.++.+...
T Consensus       146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~  224 (438)
T PRK07721        146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ  224 (438)
T ss_pred             hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC
Confidence            4689999 99999999999999999999999999999999999999954   44443     455567888888876331


Q ss_pred             CCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcccccc-CCCCCCChHHHHH-HHHHHHHcCCCCEEEEeC
Q 048556          348 LFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVG-EHGTQLSGGQKQR-IAIARAILKDPRILLLDE  425 (478)
Q Consensus       348 lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~-~~g~~LSgGq~Qr-l~lARall~~~~ililDE  425 (478)
                                      ...++...+.-...+.|++...  |.|-.+- +.-.++-  |.|| +++   .+.+||      
T Consensus       225 ----------------~~~~r~~~~~~a~~iAEyfr~~--g~~Vll~~Dsltr~A--~A~rEisl---~~ge~P------  275 (438)
T PRK07721        225 ----------------PALMRIKGAYTATAIAEYFRDQ--GLNVMLMMDSVTRVA--MAQREIGL---AVGEPP------  275 (438)
T ss_pred             ----------------CHHHHHHHHHHHHHHHHHHHHC--CCcEEEEEeChHHHH--HHHHHHHH---hcCCCC------
Confidence                            1123333333333345666542  5554332 2121111  1111 111   123333      


Q ss_pred             CCCCCCHHHHHHHHHHHHHhc---CCC-----eEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          426 ATSALDAESERVVQEALDKIM---INR-----TTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       426 pts~LD~~~~~~i~~~l~~~~---~~~-----t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      .|+|+|+.....+.+.+++..   ++.     ||++.+|+++. ..||++.++.+|+|+.
T Consensus       276 ~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivl  334 (438)
T PRK07721        276 TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVL  334 (438)
T ss_pred             ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEE
Confidence            479999999999999998875   354     99999999985 6699999999999975

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=99.49  E-value=1.9e-13  Score=129.91  Aligned_cols=134  Identities=15%  Similarity=0.218  Sum_probs=89.3

Q ss_pred             ccccceeeecCCCEEEEEcCCCCChHHHHHHHhc--cCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCc--ccH
Q 048556          278 IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIER--FYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFT--SSI  353 (478)
Q Consensus       278 ~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g--~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~--~ti  353 (478)
                      +-+|+++.=..+.+++|+||||+|||||+|.+..  .. +..|......           .-.++|.+|...-+.  +|+
T Consensus        18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~si   85 (213)
T cd03281          18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRMSSRESV   85 (213)
T ss_pred             EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeeeCCccCh
Confidence            4445554422237899999999999999999983  33 4556654311           234677777543221  122


Q ss_pred             HHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 048556          354 KDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE  433 (478)
Q Consensus       354 ~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~  433 (478)
                      .+++                                .|        + .-+-||+++|++++.+|++++||||++++|+.
T Consensus        86 ~~~~--------------------------------S~--------f-~~el~~l~~~l~~~~~~slvllDE~~~gtd~~  124 (213)
T cd03281          86 SSGQ--------------------------------SA--------F-MIDLYQVSKALRLATRRSLVLIDEFGKGTDTE  124 (213)
T ss_pred             hhcc--------------------------------ch--------H-HHHHHHHHHHHHhCCCCcEEEeccccCCCCHH
Confidence            2221                                00        0 23559999999999999999999999999997


Q ss_pred             HHHHH-HHHHHHhcC----CCeEEEEecCchhhhhc
Q 048556          434 SERVV-QEALDKIMI----NRTTVIVAHRLSTVRNA  464 (478)
Q Consensus       434 ~~~~i-~~~l~~~~~----~~t~i~itH~~~~~~~~  464 (478)
                      ....+ ...++.+.+    ..++|++||..+.++..
T Consensus       125 ~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~  160 (213)
T cd03281         125 DGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS  160 (213)
T ss_pred             HHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence            54444 455665532    24899999999987654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR01069 mutS2 MutS2 family protein

Probab=99.44  E-value=7.1e-13  Score=147.14  Aligned_cols=144  Identities=17%  Similarity=0.227  Sum_probs=98.7

Q ss_pred             cEEEEeEEEECCCCCCCcccc-----cceeeecCC-CEEEEEcCCCCChHHHHHHHhcc-CCCCccEEEECCeecCCCCH
Q 048556          260 DIELKDIYFSYPSRPGEQIFN-----GFSLSIPSG-TTAALVGQSGSGKSTVISLIERF-YDPQAGEVLIDGVNLKEFQL  332 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~-----~is~~i~~G-~~~~ivG~sGsGKSTL~~ll~g~-~~~~~G~i~~~g~~~~~~~~  332 (478)
                      .+.++++..        |.++     .+|+++.+| +.++|+||||+|||||+|++++. +.+..|-             
T Consensus       295 ~i~l~~~rh--------Pll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~-------------  353 (771)
T TIGR01069       295 KIILENARH--------PLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI-------------  353 (771)
T ss_pred             CEEEccccC--------ceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC-------------
Confidence            477766543        3443     378888887 89999999999999999999987 3444441             


Q ss_pred             HHhhcceEEEecCCC-CCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 048556          333 KWIRGKIGLVSQEPV-LFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIA  411 (478)
Q Consensus       333 ~~~r~~i~~v~Q~~~-lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lA  411 (478)
                              +||.... .+  .+.+++..   ...++                       ..+.++..+||+|++|+..++
T Consensus       354 --------~Vpa~~~~~~--~~~d~i~~---~i~~~-----------------------~si~~~LStfS~~m~~~~~il  397 (771)
T TIGR01069       354 --------PIPANEHSEI--PYFEEIFA---DIGDE-----------------------QSIEQNLSTFSGHMKNISAIL  397 (771)
T ss_pred             --------CccCCccccc--cchhheee---ecChH-----------------------hHHhhhhhHHHHHHHHHHHHH
Confidence                    3333321 01  11222210   01110                       111233467999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHH-HHHHHhc-CCCeEEEEecCchhh
Q 048556          412 RAILKDPRILLLDEATSALDAESERVVQ-EALDKIM-INRTTVIVAHRLSTV  461 (478)
Q Consensus       412 Rall~~~~ililDEpts~LD~~~~~~i~-~~l~~~~-~~~t~i~itH~~~~~  461 (478)
                      +++ .+|+++|||||++++|+.....+. ..+..+. .++++|++||..+..
T Consensus       398 ~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~  448 (771)
T TIGR01069       398 SKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELK  448 (771)
T ss_pred             Hhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHH
Confidence            887 789999999999999999988885 4455543 478999999998764

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>TIGR00634 recN DNA repair protein RecN

Probab=99.41  E-value=4.6e-13  Score=144.99  Aligned_cols=77  Identities=18%  Similarity=0.294  Sum_probs=71.7

Q ss_pred             CCCChHHHHHHHHHHHHcCC----CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCC
Q 048556          398 TQLSGGQKQRIAIARAILKD----PRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQG  473 (478)
Q Consensus       398 ~~LSgGq~Qrl~lARall~~----~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G  473 (478)
                      ..+||||+||++|||+++..    |+++||||||++||+.+...+.+.|+++.+++|||+|||++..+..||++++|++|
T Consensus       439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~  518 (563)
T TIGR00634       439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKE  518 (563)
T ss_pred             hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEc
Confidence            57899999999999999985    69999999999999999999999999987789999999999999889999999876


Q ss_pred             E
Q 048556          474 K  474 (478)
Q Consensus       474 ~  474 (478)
                      .
T Consensus       519 ~  519 (563)
T TIGR00634       519 G  519 (563)
T ss_pred             c
Confidence            3

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.41  E-value=3.1e-13  Score=128.51  Aligned_cols=44  Identities=18%  Similarity=0.292  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHcCCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHhc
Q 048556          403 GQKQRIAIARAILKDPRILLLDEAT-----SALDAESERVVQEALDKIM  446 (478)
Q Consensus       403 Gq~Qrl~lARall~~~~ililDEpt-----s~LD~~~~~~i~~~l~~~~  446 (478)
                      -|+++..|||+++.+|+++++||||     ++||+.+.+.+.+.++++.
T Consensus       156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~  204 (215)
T PTZ00132        156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA  204 (215)
T ss_pred             HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence            3999999999999999999999999     9999999999999998864

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=99.39  E-value=6.5e-13  Score=132.91  Aligned_cols=170  Identities=25%  Similarity=0.396  Sum_probs=117.6

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCC----CCHHHhhc--------------ceEEEecCCCC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE----FQLKWIRG--------------KIGLVSQEPVL  348 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~----~~~~~~r~--------------~i~~v~Q~~~l  348 (478)
                      +||+..++||.+|-||||-++.++|-.+|.-|.- -++-+..+    ....++..              ..-||.|-|..
T Consensus        98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~-~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~  176 (592)
T KOG0063|consen   98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRY-DNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRA  176 (592)
T ss_pred             CcchhccccccCcccHHHHHHHHhCCCCCCCCCC-CCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHH
Confidence            6899999999999999999999999999987753 12222111    11111111              01233333333


Q ss_pred             CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCC
Q 048556          349 FTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS  428 (478)
Q Consensus       349 f~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts  428 (478)
                      ..+++.+++.--.+..+.++            .+..+  -++..+......||||+-||.++|.+.+.+++++++|||.|
T Consensus       177 ~k~~v~~~l~~~~~r~~~~~------------~~~~~--~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSs  242 (592)
T KOG0063|consen  177 VKGTVGSLLDRKDERDNKEE------------VCDQL--DLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSS  242 (592)
T ss_pred             HHHHHHHHHHHHhhcccHHH------------HHHHH--HHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcc
Confidence            34455555432111111122            22222  23344445567899999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEe
Q 048556          429 ALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIH  471 (478)
Q Consensus       429 ~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~  471 (478)
                      .||.+.+.+-...|+.+. .++-+|+|-|+++.+.. .|-|-.+-
T Consensus       243 YLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLY  287 (592)
T KOG0063|consen  243 YLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLY  287 (592)
T ss_pred             cchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEe
Confidence            999999988888888875 57899999999999987 78887663

>PRK10869 recombination and repair protein; Provisional

Probab=99.38  E-value=1.8e-12  Score=139.50  Aligned_cols=76  Identities=20%  Similarity=0.285  Sum_probs=70.6

Q ss_pred             CCCChHHHHHHHHHHHHcC----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCC
Q 048556          398 TQLSGGQKQRIAIARAILK----DPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQG  473 (478)
Q Consensus       398 ~~LSgGq~Qrl~lARall~----~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G  473 (478)
                      ..+||||+||++|||+++.    +|+++|||||+++||..+...+.+.|+++.+++|+|+|||++..+..||+.++++++
T Consensus       429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~  508 (553)
T PRK10869        429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKE  508 (553)
T ss_pred             hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEecc
Confidence            3579999999999999996    589999999999999999999999999987789999999999999889999999874

>PRK14079 recF recombination protein F; Provisional

Probab=99.34  E-value=1.7e-11  Score=125.02  Aligned_cols=74  Identities=20%  Similarity=0.270  Sum_probs=60.8

Q ss_pred             CCCChHHHHHHHHHHHHc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEE
Q 048556          398 TQLSGGQKQRIAIARAIL---------KDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIA  468 (478)
Q Consensus       398 ~~LSgGq~Qrl~lARall---------~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~  468 (478)
                      ..+|+||++++++|+.|.         .+|++++||||||.||......+.+.|....  .++|..|+   .-.-+|+++
T Consensus       262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~--q~~it~t~---~~~~~~~~~  336 (349)
T PRK14079        262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP--QAIVAGTE---APPGAALTL  336 (349)
T ss_pred             HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC--cEEEEcCC---CCCCCceEE
Confidence            468999999999999998         8999999999999999999999999886532  34444443   223489999


Q ss_pred             EEeCCEEe
Q 048556          469 VIHQGKLV  476 (478)
Q Consensus       469 vl~~G~i~  476 (478)
                      .+++|++.
T Consensus       337 ~~~~~~~~  344 (349)
T PRK14079        337 RIEAGVFT  344 (349)
T ss_pred             EEeccEec
Confidence            99999874

>TIGR00611 recf recF protein

Probab=99.34  E-value=1.6e-11  Score=125.83  Aligned_cols=63  Identities=29%  Similarity=0.425  Sum_probs=56.9

Q ss_pred             CCCChHHHHHHHHHHHHcC---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh
Q 048556          398 TQLSGGQKQRIAIARAILK---------DPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVR  462 (478)
Q Consensus       398 ~~LSgGq~Qrl~lARall~---------~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~  462 (478)
                      ..+|.||+++++||.+|+.         +|+|++||||+|+||+...+.+.+.|...  +.+++++||++..+.
T Consensus       274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~  345 (365)
T TIGR00611       274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK  345 (365)
T ss_pred             HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence            4789999999999999999         99999999999999999999999999753  569999999987654

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK13695 putative NTPase; Provisional

Probab=99.31  E-value=1.8e-12  Score=119.25  Aligned_cols=80  Identities=18%  Similarity=0.211  Sum_probs=63.7

Q ss_pred             CCCCCCChHHHHHHHHHHHHcCCCCEEEEeC--CCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeC
Q 048556          395 EHGTQLSGGQKQRIAIARAILKDPRILLLDE--ATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQ  472 (478)
Q Consensus       395 ~~g~~LSgGq~Qrl~lARall~~~~ililDE--pts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~  472 (478)
                      .....+||+++-+..+++..+.+|+++++||  |+.++|....+.+.+.+   ..++++|+++|+-.....+|+|..+.+
T Consensus        74 ~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~---~~~~~~i~v~h~~~~~~~~~~i~~~~~  150 (174)
T PRK13695         74 KYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL---DSEKPVIATLHRRSVHPFVQEIKSRPG  150 (174)
T ss_pred             eEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH---hCCCeEEEEECchhhHHHHHHHhccCC
Confidence            3345699999999999999999999999999  55566655554554444   246899999999666667999999999


Q ss_pred             CEEee
Q 048556          473 GKLVE  477 (478)
Q Consensus       473 G~i~~  477 (478)
                      |++.+
T Consensus       151 ~~i~~  155 (174)
T PRK13695        151 GRVYE  155 (174)
T ss_pred             cEEEE
Confidence            99865

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=99.30  E-value=6.8e-12  Score=119.67  Aligned_cols=137  Identities=16%  Similarity=0.188  Sum_probs=84.7

Q ss_pred             CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhc-cCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc-cH
Q 048556          276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIER-FYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SI  353 (478)
Q Consensus       276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g-~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti  353 (478)
                      ..+.+|+++++++|++++|.||||+||||+++.+++ .+.++.|..... ..          -.++|.+|   +|.. ..
T Consensus        18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a-~~----------~~~~~~~~---i~~~~~~   83 (222)
T cd03287          18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA-SS----------ATLSIFDS---VLTRMGA   83 (222)
T ss_pred             CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc-Cc----------eEEeccce---EEEEecC
Confidence            468899999999999999999999999999999999 677888875432 11          12333333   2210 11


Q ss_pred             HHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 048556          354 KDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE  433 (478)
Q Consensus       354 ~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~  433 (478)
                      .|++.-+..  +                                  ++ .|-+|++-+-.-..+|+++|||||.++.|+.
T Consensus        84 ~d~~~~~~S--t----------------------------------F~-~e~~~~~~il~~~~~~sLvllDE~~~gT~~~  126 (222)
T cd03287          84 SDSIQHGMS--T----------------------------------FM-VELSETSHILSNCTSRSLVILDELGRGTSTH  126 (222)
T ss_pred             ccccccccc--h----------------------------------HH-HHHHHHHHHHHhCCCCeEEEEccCCCCCChh
Confidence            222211110  0                                  00 1111221111223579999999998887766


Q ss_pred             HHHHH-HHHHHHhc--CCCeEEEEecCchhhhh
Q 048556          434 SERVV-QEALDKIM--INRTTVIVAHRLSTVRN  463 (478)
Q Consensus       434 ~~~~i-~~~l~~~~--~~~t~i~itH~~~~~~~  463 (478)
                      ....+ ...++.+.  .++|+|++||+.+..+.
T Consensus       127 d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~  159 (222)
T cd03287         127 DGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEI  159 (222)
T ss_pred             hHHHHHHHHHHHHHhccCCeEEEEcccHHHHHH
Confidence            55543 23333333  36799999999887543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=99.28  E-value=7.6e-12  Score=139.32  Aligned_cols=74  Identities=14%  Similarity=0.153  Sum_probs=59.9

Q ss_pred             CCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhc-CCCeEEEEecCchhhhh-cCEEEE
Q 048556          395 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEA-LDKIM-INRTTVIVAHRLSTVRN-ADLIAV  469 (478)
Q Consensus       395 ~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~-l~~~~-~~~t~i~itH~~~~~~~-~d~i~v  469 (478)
                      .+..+||+|++|+..++|++ .+|+++|||||++|+|+.....+... +..+. .++++|++||..+.... +|+..+
T Consensus       386 ~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v  462 (782)
T PRK00409        386 QSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGV  462 (782)
T ss_pred             hchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCe
Confidence            44578999999999999999 88999999999999999988887654 44443 46899999999887665 444433

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=99.28  E-value=5.4e-11  Score=114.42  Aligned_cols=157  Identities=16%  Similarity=0.234  Sum_probs=89.8

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHH-HHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTV-ISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL-~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      +.+++++..+++            .+++|+.+.|.||+||||||| ++.+.++.++....+++...    .+.++     
T Consensus         8 ~~~~~ld~~l~g------------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e----~~~~~-----   66 (230)
T PRK08533          8 LSRDELHKRLGG------------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ----LTTTE-----   66 (230)
T ss_pred             EEEeeeehhhCC------------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC----CCHHH-----
Confidence            556666655532            379999999999999999999 69999887654333333211    11111     


Q ss_pred             EEEecCCCCCcccHHHHH-hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc---
Q 048556          340 GLVSQEPVLFTSSIKDNI-NYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL---  415 (478)
Q Consensus       340 ~~v~Q~~~lf~~ti~eNl-~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall---  415 (478)
                                   +.++. .+|.+   .++            .+..  ..+. .+.- ...+|+++.++-.+++.+-   
T Consensus        67 -------------~~~~~~~~g~~---~~~------------~~~~--~~l~-~~~~-~~~~~~~~~~~~~l~~il~~~~  114 (230)
T PRK08533         67 -------------FIKQMMSLGYD---INK------------KLIS--GKLL-YIPV-YPLLSGNSEKRKFLKKLMNTRR  114 (230)
T ss_pred             -------------HHHHHHHhCCc---hHH------------Hhhc--CcEE-EEEe-cccccChHHHHHHHHHHHHHHH
Confidence                         11121 11110   000            1000  0000 0000 0235666555544444332   


Q ss_pred             -CCCCEEEEeCCCCCC----CHHHHHHHHHHHHHhcC-CCeEEEEecCchh--------hhh-cCEEEEEe
Q 048556          416 -KDPRILLLDEATSAL----DAESERVVQEALDKIMI-NRTTVIVAHRLST--------VRN-ADLIAVIH  471 (478)
Q Consensus       416 -~~~~ililDEpts~L----D~~~~~~i~~~l~~~~~-~~t~i~itH~~~~--------~~~-~d~i~vl~  471 (478)
                       .+|+++++||||+.+    |+...+.+.+.++.+.+ ++|+ ++||+...        ++. ||-|+.|+
T Consensus       115 ~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tv-i~t~~~~~~~~~~~~~~~~~~DgvI~L~  184 (230)
T PRK08533        115 FYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVI-ILTANPKELDESVLTILRTAATMLIRLE  184 (230)
T ss_pred             hcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEE-EEEecccccccccceeEEEeeeEEEEEE
Confidence             369999999999999    77777888888887754 5555 45666443        233 67788776

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=99.24  E-value=4.5e-11  Score=110.70  Aligned_cols=84  Identities=12%  Similarity=0.139  Sum_probs=64.2

Q ss_pred             CccccccCCCCCCChHHHH------HHHHHHHHcCCCCEEEEeCCCCCCC---HHHHHHHHHHHHHhc-CCCeEEEEecC
Q 048556          388 GLDTMVGEHGTQLSGGQKQ------RIAIARAILKDPRILLLDEATSALD---AESERVVQEALDKIM-INRTTVIVAHR  457 (478)
Q Consensus       388 g~~t~~~~~g~~LSgGq~Q------rl~lARall~~~~ililDEpts~LD---~~~~~~i~~~l~~~~-~~~t~i~itH~  457 (478)
                      |...........+|+||+|      ....+.+.-.+|+++++||||+.+|   ......+.+.++.+. .+.|+|+++|.
T Consensus        60 g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~  139 (187)
T cd01124          60 GLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQ  139 (187)
T ss_pred             CCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence            4444556667789999998      4444444556899999999999999   777777777776654 46899999998


Q ss_pred             chh---------hhh-cCEEEEEe
Q 048556          458 LST---------VRN-ADLIAVIH  471 (478)
Q Consensus       458 ~~~---------~~~-~d~i~vl~  471 (478)
                      ...         ++. ||.|+.|+
T Consensus       140 ~~~~~~~~~~~~~~~~aD~ii~l~  163 (187)
T cd01124         140 SGLEGTGFGGGDVEYLVDGVIRLR  163 (187)
T ss_pred             ccCCCcccCcCceeEeeeEEEEEE
Confidence            764         445 89999886

A related protein is found in archaea.

>TIGR00618 sbcc exonuclease SbcC

Probab=99.21  E-value=3.3e-11  Score=139.48  Aligned_cols=78  Identities=23%  Similarity=0.217  Sum_probs=70.7

Q ss_pred             CCCCCChHHHHHHHHHHHHcC----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-
Q 048556          396 HGTQLSGGQKQRIAIARAILK----------DPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-  463 (478)
Q Consensus       396 ~g~~LSgGq~Qrl~lARall~----------~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-  463 (478)
                      ...+|||||++|++||+||..          +|++|||||||++||+.+...+++.|.++. .+++|++|||.+..... 
T Consensus       947 ~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~ 1026 (1042)
T TIGR00618       947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERI 1026 (1042)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhh
Confidence            458999999999999999985          799999999999999999999999998875 47899999999998776 


Q ss_pred             cCEEEEEeCC
Q 048556          464 ADLIAVIHQG  473 (478)
Q Consensus       464 ~d~i~vl~~G  473 (478)
                      +|+|.|+..|
T Consensus      1027 ~~~i~v~~~~ 1036 (1042)
T TIGR00618      1027 PHRILVKKTN 1036 (1042)
T ss_pred             CCEEEEEECC
Confidence            8999999653

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK01156 chromosome segregation protein; Provisional

Probab=99.19  E-value=5.5e-11  Score=135.94  Aligned_cols=76  Identities=22%  Similarity=0.393  Sum_probs=67.3

Q ss_pred             CCCCCChHHHHHHHH------HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C--C-CeEEEEecCchhhhhcC
Q 048556          396 HGTQLSGGQKQRIAI------ARAILKDPRILLLDEATSALDAESERVVQEALDKIM-I--N-RTTVIVAHRLSTVRNAD  465 (478)
Q Consensus       396 ~g~~LSgGq~Qrl~l------ARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~--~-~t~i~itH~~~~~~~~d  465 (478)
                      .+..|||||+||++|      ||+++.+|++++|||||++||+.....+.+.+.... .  + .|+|+|||++..+..||
T Consensus       798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d  877 (895)
T PRK01156        798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD  877 (895)
T ss_pred             ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence            467899999999975      599999999999999999999999999999886432 2  2 48999999999998899


Q ss_pred             EEEEEe
Q 048556          466 LIAVIH  471 (478)
Q Consensus       466 ~i~vl~  471 (478)
                      +++.++
T Consensus       878 ~ii~~~  883 (895)
T PRK01156        878 VAYEVK  883 (895)
T ss_pred             eEEEEE
Confidence            999997

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=99.18  E-value=5.8e-11  Score=119.20  Aligned_cols=133  Identities=15%  Similarity=0.191  Sum_probs=88.6

Q ss_pred             ceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCC
Q 048556          282 FSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGK  361 (478)
Q Consensus       282 is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~  361 (478)
                      +++.+++|+.++|+||+|||||||+++|+++++|..|.+.+.  +..++.... ++.+.++.+...           -+.
T Consensus       137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~-~~~~~l~~~~~~-----------~~~  202 (308)
T TIGR02788       137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPH-PNYVHLFYSKGG-----------QGL  202 (308)
T ss_pred             HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCC-CCEEEEEecCCC-----------CCc
Confidence            557789999999999999999999999999999998988875  333332221 222222222100           000


Q ss_pred             CCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHH
Q 048556          362 DGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEA  441 (478)
Q Consensus       362 ~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~  441 (478)
                      +..+.                                        .-.++++|-.+|+++++|||.+       .+.++.
T Consensus       203 ~~~~~----------------------------------------~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~  235 (308)
T TIGR02788       203 AKVTP----------------------------------------KDLLQSCLRMRPDRIILGELRG-------DEAFDF  235 (308)
T ss_pred             CccCH----------------------------------------HHHHHHHhcCCCCeEEEeccCC-------HHHHHH
Confidence            11111                                        1235557778999999999996       233455


Q ss_pred             HHHhcC-CCeEEEEecCchhhhhcCEEEEEeCCEE
Q 048556          442 LDKIMI-NRTTVIVAHRLSTVRNADLIAVIHQGKL  475 (478)
Q Consensus       442 l~~~~~-~~t~i~itH~~~~~~~~d~i~vl~~G~i  475 (478)
                      ++.... +.+++.++|..+.....||+..|..|++
T Consensus       236 l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~  270 (308)
T TIGR02788       236 IRAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQ  270 (308)
T ss_pred             HHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccc
Confidence            555443 4467999999997777888887766654

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=99.17  E-value=1.5e-11  Score=126.90  Aligned_cols=66  Identities=23%  Similarity=0.306  Sum_probs=55.8

Q ss_pred             cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCcc-EEEECCeecCCCCHHHhhcceEEEecC
Q 048556          277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG-EVLIDGVNLKEFQLKWIRGKIGLVSQE  345 (478)
Q Consensus       277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G-~i~~~g~~~~~~~~~~~r~~i~~v~Q~  345 (478)
                      .+|+++|+++++||+++|+||||||||||++  +|+.+|++| +|.++|.++...+..++... -+|+|+
T Consensus        20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~L-R~VFQ~   86 (504)
T TIGR03238        20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETL-DEIFDG   86 (504)
T ss_pred             HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHH-HHHHHh
Confidence            5899999999999999999999999999999  788888888 79999999987665543221 177774

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>PRK03918 chromosome segregation protein; Provisional

Probab=99.17  E-value=6.2e-11  Score=135.40  Aligned_cols=75  Identities=28%  Similarity=0.411  Sum_probs=67.0

Q ss_pred             CCCCChHHHH------HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchhhhhcCEEEE
Q 048556          397 GTQLSGGQKQ------RIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI-NRTTVIVAHRLSTVRNADLIAV  469 (478)
Q Consensus       397 g~~LSgGq~Q------rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~~d~i~v  469 (478)
                      ...|||||+|      |+||||+++.+|+++||||||++||+.....+.+.|..+.. +.|+|+|||++.....||++++
T Consensus       786 ~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~  865 (880)
T PRK03918        786 LTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVIR  865 (880)
T ss_pred             hhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEEE
Confidence            4689999999      56666789999999999999999999999999999987643 5799999999998888999999


Q ss_pred             Ee
Q 048556          470 IH  471 (478)
Q Consensus       470 l~  471 (478)
                      |+
T Consensus       866 l~  867 (880)
T PRK03918        866 VS  867 (880)
T ss_pred             EE
Confidence            97

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.13  E-value=6.9e-11  Score=138.60  Aligned_cols=76  Identities=25%  Similarity=0.341  Sum_probs=69.0

Q ss_pred             CCCCCCChHHHHHHHHHHHH----cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEE
Q 048556          395 EHGTQLSGGQKQRIAIARAI----LKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVI  470 (478)
Q Consensus       395 ~~g~~LSgGq~Qrl~lARal----l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl  470 (478)
                      ..+..|||||+||++|||++    +++|+++||||||++||+.+...+.+.|+.+.++.++|+|||+++.+..||+++.+
T Consensus      1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~ 1164 (1179)
T TIGR02168      1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYGV 1164 (1179)
T ss_pred             ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHeee
Confidence            34578999999999999998    47789999999999999999999999999887778999999999999889999755

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=99.12  E-value=1.3e-10  Score=111.15  Aligned_cols=64  Identities=27%  Similarity=0.402  Sum_probs=53.5

Q ss_pred             CCCChHHHHHHHHHHHHcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchhh
Q 048556          398 TQLSGGQKQRIAIARAILKDP---RILLLDEATSALDAESERVVQEALDKIMI-NRTTVIVAHRLSTV  461 (478)
Q Consensus       398 ~~LSgGq~Qrl~lARall~~~---~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~  461 (478)
                      ..+|.|++|.+.++-+++..+   .++++|||-++|+|...+.+.+.|....+ +.-+|++||.+..+
T Consensus       235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il  302 (303)
T PF13304_consen  235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL  302 (303)
T ss_dssp             S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred             ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence            456999999999999888876   89999999999999999999999988765 67899999998765

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=99.12  E-value=4.7e-10  Score=106.75  Aligned_cols=137  Identities=20%  Similarity=0.203  Sum_probs=84.5

Q ss_pred             CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCC-ccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc-cH
Q 048556          276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ-AGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SI  353 (478)
Q Consensus       276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~-~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti  353 (478)
                      ..+-+|++|++++|++++|.||||+||||+++.+....-.. -|-- +   +     .+  ...+.++   ..+|.. ..
T Consensus        17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~-v---p-----a~--~~~i~~~---~~i~~~~~~   82 (218)
T cd03286          17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMD-V---P-----AK--SMRLSLV---DRIFTRIGA   82 (218)
T ss_pred             CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCc-c---C-----cc--ccEeccc---cEEEEecCc
Confidence            46889999999999999999999999999999998653211 1210 0   0     00  0111111   112221 22


Q ss_pred             HHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 048556          354 KDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE  433 (478)
Q Consensus       354 ~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~  433 (478)
                      .||+..+..  +..                                   .|-++++-.-....+|++++||||++|+|+.
T Consensus        83 ~d~~~~~~S--tF~-----------------------------------~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~  125 (218)
T cd03286          83 RDDIMKGES--TFM-----------------------------------VELSETANILRHATPDSLVILDELGRGTSTH  125 (218)
T ss_pred             ccccccCcc--hHH-----------------------------------HHHHHHHHHHHhCCCCeEEEEecccCCCCch
Confidence            333332211  110                                   1112221111223578999999999999999


Q ss_pred             HHHHHHHH-HHHhcC--CCeEEEEecCchhhhh
Q 048556          434 SERVVQEA-LDKIMI--NRTTVIVAHRLSTVRN  463 (478)
Q Consensus       434 ~~~~i~~~-l~~~~~--~~t~i~itH~~~~~~~  463 (478)
                      ....+... ++.+.+  ++++|++||.++....
T Consensus       126 dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~  158 (218)
T cd03286         126 DGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDE  158 (218)
T ss_pred             HHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence            88877777 555543  7899999999987655

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=99.11  E-value=3.1e-10  Score=117.40  Aligned_cols=163  Identities=19%  Similarity=0.234  Sum_probs=114.5

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      .++.++++..|..  +..+++++ |++.+||+++|+|++|+|||||++.|+|..+|+.|.|.+.|..-.           
T Consensus       130 ~~~r~~i~~~l~T--GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~-----------  195 (432)
T PRK06793        130 AFEREEITDVFET--GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGR-----------  195 (432)
T ss_pred             chheechhhccCC--CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcc-----------
Confidence            3566777777752  35678875 999999999999999999999999999999999888766554321           


Q ss_pred             EEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc----
Q 048556          340 GLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL----  415 (478)
Q Consensus       340 ~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall----  415 (478)
                                  +++|.+..            .+...+++          .+.+=....+-|.|+|+|.+.+.+.+    
T Consensus       196 ------------ev~e~~~~------------~l~~~gl~----------~tvvv~~tsd~s~~~r~ra~~~a~~iAEyf  241 (432)
T PRK06793        196 ------------EVKDFIRK------------ELGEEGMR----------KSVVVVATSDESHLMQLRAAKLATSIAEYF  241 (432)
T ss_pred             ------------cHHHHHHH------------Hhhhcccc----------eeEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence                        22222210            01111110          12222445778999999999999887    


Q ss_pred             ---CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEEeCCEE
Q 048556          416 ---KDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIAVIHQGKL  475 (478)
Q Consensus       416 ---~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl~~G~i  475 (478)
                         .++-++++||||...|+.  ++|...+.+.. .+.+..+.||-...++.+-+   .++|.|
T Consensus       242 r~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~---~~~GSi  300 (432)
T PRK06793        242 RDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK---TQKGSI  300 (432)
T ss_pred             HHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc---CCCcce
Confidence               788899999999999997  55655665544 35677777886556666544   356765

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=99.10  E-value=1.7e-11  Score=134.50  Aligned_cols=174  Identities=13%  Similarity=0.109  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556          106 TKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKY-----NESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYS  180 (478)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (478)
                      ++.............+.+.|.+.++.+||..+.+.....+|     .+...+..+...+..........+...+......
T Consensus        29 ~~~~~~~~~~~~~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~~v~~~~~~~~~~~~~~~i~~~~~~  108 (644)
T PRK10733         29 GRKVDYSTFLQEVNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEEPSLLASIFISWFP  108 (644)
T ss_pred             cccCCHHHHHHHHHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHcCCeEEecCcccchHHHHHHHHHHH
Confidence            33344444444556778888899999999999888776666     4555555554444444434444444555566677


Q ss_pred             HHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccCCCCCCccCCC
Q 048556          181 LAIWFGGKMILEKGYKGG---DVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPLIDAYDSNGVKLDDI  257 (478)
Q Consensus       181 ~~l~~g~~lv~~g~ls~G---~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~  257 (478)
                      +++|+|++++..|.++.|   .++++..+......+ ..+...+..+.....+.+|+.++++...+.   .         
T Consensus       109 ~il~ig~~~v~~g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~~l~~i~~~~~~~---~---------  175 (644)
T PRK10733        109 MLLLIGVWIFFMRQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKEEVAELVEYLREP---S---------  175 (644)
T ss_pred             HHHHHHHHHHHHhhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHHHHHHHHHHhhCH---H---------
Confidence            888899999999999988   555554333333333 344445556666666777777766532110   0         


Q ss_pred             CccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556          258 RGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       258 ~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                                          ..+++...+++|  +.|+||+|+||||+++.+++...
T Consensus       176 --------------------~~~~~~~~~~~g--ill~G~~G~GKt~~~~~~a~~~~  210 (644)
T PRK10733        176 --------------------RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK  210 (644)
T ss_pred             --------------------HHHhcCCCCCCc--EEEECCCCCCHHHHHHHHHHHcC
Confidence                                001122255666  99999999999999999988653

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=99.09  E-value=9.6e-10  Score=98.57  Aligned_cols=129  Identities=16%  Similarity=0.121  Sum_probs=79.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHH
Q 048556          291 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIM  370 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~  370 (478)
                      +++|.||+|+||||+++.+++...+..|.+.+.                   +.+...-  ...++....          
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~-------------------~~e~~~~--~~~~~~~~~----------   49 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYV-------------------DIEEEIE--ELTERLIGE----------   49 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEE-------------------ECCcchH--HHHHHHhhh----------
Confidence            368999999999999999999887765665443                   3222100  011111000          


Q ss_pred             HHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCC----------CHHHHHHHHH
Q 048556          371 AAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL----------DAESERVVQE  440 (478)
Q Consensus       371 ~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~L----------D~~~~~~i~~  440 (478)
                              ..  ...+++ ...+.......+.++.++++.+++...+|+++++||+++-+          |....+.+.+
T Consensus        50 --------~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~  118 (165)
T cd01120          50 --------SL--KGALDN-LIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRE  118 (165)
T ss_pred             --------hh--cccccc-EEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHH
Confidence                    00  000111 12222333344566667888999999999999999999544          4444556655


Q ss_pred             HHHHhc-CCCeEEEEecCchhh
Q 048556          441 ALDKIM-INRTTVIVAHRLSTV  461 (478)
Q Consensus       441 ~l~~~~-~~~t~i~itH~~~~~  461 (478)
                      ...... .+.|+++++|.....
T Consensus       119 l~~~~~~~~~~vv~~~~~~~~~  140 (165)
T cd01120         119 LLERARKGGVTVIFTLQVPSGD  140 (165)
T ss_pred             HHHHHhcCCceEEEEEecCCcc
Confidence            555544 378999999987543

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=99.07  E-value=1.6e-09  Score=121.90  Aligned_cols=63  Identities=19%  Similarity=0.255  Sum_probs=54.9

Q ss_pred             HcCCCCEEEEeCCCCCC-CHHHHHHHHHHHHHhc-CCCeEEEEecCchhh----------hhcCEEEEEeCCEEe
Q 048556          414 ILKDPRILLLDEATSAL-DAESERVVQEALDKIM-INRTTVIVAHRLSTV----------RNADLIAVIHQGKLV  476 (478)
Q Consensus       414 ll~~~~ililDEpts~L-D~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~----------~~~d~i~vl~~G~i~  476 (478)
                      +..+|+++++|||+.+| |+...+.+.+.+++.+ .+.+++++||+++.+          +.||+.++|.+|++.
T Consensus       649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~  723 (818)
T PRK13830        649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAR  723 (818)
T ss_pred             cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCcccc
Confidence            35799999999999999 6899999999998875 478999999999876          469999999999864

>cd01131 PilT Pilus retraction ATPase PilT

Probab=99.07  E-value=3.3e-10  Score=106.48  Aligned_cols=119  Identities=23%  Similarity=0.339  Sum_probs=76.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCCCC-ccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHH
Q 048556          291 TAALVGQSGSGKSTVISLIERFYDPQ-AGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEI  369 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~~~-~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~  369 (478)
                      .+.|+||+||||||+++.+++.+.+. .|.|.....++. +...   ...+++.|..                       
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~~~---~~~~~i~q~~-----------------------   55 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FVHE---SKRSLINQRE-----------------------   55 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-cccc---Cccceeeecc-----------------------
Confidence            68899999999999999999888754 567655443331 1100   0111222210                       


Q ss_pred             HHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCC
Q 048556          370 MAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINR  449 (478)
Q Consensus       370 ~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~  449 (478)
                                             +|.....++.      ++++++..+|+++++|||.   |.++...+.+   ....+.
T Consensus        56 -----------------------vg~~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~~l~---~a~~G~  100 (198)
T cd01131          56 -----------------------VGLDTLSFEN------ALKAALRQDPDVILVGEMR---DLETIRLALT---AAETGH  100 (198)
T ss_pred             -----------------------cCCCccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHHHHH---HHHcCC
Confidence                                   1111111211      4788999999999999996   6555443333   334578


Q ss_pred             eEEEEecCchhhhhcCEEEEEe
Q 048556          450 TTVIVAHRLSTVRNADLIAVIH  471 (478)
Q Consensus       450 t~i~itH~~~~~~~~d~i~vl~  471 (478)
                      +++.++|..+.....||++.+-
T Consensus       101 ~v~~t~Ha~~~~~~~~Rl~~l~  122 (198)
T cd01131         101 LVMSTLHTNSAAKTIDRIIDVF  122 (198)
T ss_pred             EEEEEecCCcHHHHHhHHHhhc
Confidence            8999999999887788887663

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.05  E-value=3.4e-10  Score=132.81  Aligned_cols=76  Identities=20%  Similarity=0.194  Sum_probs=69.2

Q ss_pred             CCCCChHHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeC
Q 048556          397 GTQLSGGQKQRIAIARAIL----KDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQ  472 (478)
Q Consensus       397 g~~LSgGq~Qrl~lARall----~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~  472 (478)
                      ...||||||++++||++++    .+||++||||||++||+.....+.+.|.....+.++|+|||+...+..||+++.+..
T Consensus      1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~~~~d~~~~~~~ 1151 (1164)
T TIGR02169      1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEYADRAIGVTM 1151 (1164)
T ss_pred             chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHhcceeEeEEE
Confidence            3589999999999999997    478999999999999999999999999988777889999999999988999987743

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=99.01  E-value=1.2e-08  Score=88.24  Aligned_cols=117  Identities=34%  Similarity=0.437  Sum_probs=82.9

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccCCCCc-cEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCH
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFYDPQA-GEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASI  366 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~-G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~  366 (478)
                      +|..+.|+||+||||||+++.+++...... +-+.++.............                              
T Consensus         1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------   50 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------   50 (148)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence            478899999999999999999999987754 4555555443222211111                              


Q ss_pred             HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH------
Q 048556          367 AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQE------  440 (478)
Q Consensus       367 ~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~------  440 (478)
                                             ............+++.++..+++|-..+|+++++||+..-.+.........      
T Consensus        51 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~  107 (148)
T smart00382       51 -----------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRL  107 (148)
T ss_pred             -----------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHH
Confidence                                   112223456678888899999999988899999999999999998776654      


Q ss_pred             -HHHHhcCCCeEEEEecC
Q 048556          441 -ALDKIMINRTTVIVAHR  457 (478)
Q Consensus       441 -~l~~~~~~~t~i~itH~  457 (478)
                       ..........+|.++|.
T Consensus       108 ~~~~~~~~~~~~i~~~~~  125 (148)
T smart00382      108 LLLLKSEKNLTVILTTND  125 (148)
T ss_pred             HHHHHhcCCCEEEEEeCC
Confidence             22222346778888883

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=98.99  E-value=1.2e-09  Score=126.30  Aligned_cols=78  Identities=26%  Similarity=0.297  Sum_probs=68.3

Q ss_pred             CCCCCCChHHHHHHHHHHHHcC--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-c
Q 048556          395 EHGTQLSGGQKQRIAIARAILK--------DPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-A  464 (478)
Q Consensus       395 ~~g~~LSgGq~Qrl~lARall~--------~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~  464 (478)
                      ....+|||||+|+++|||||..        +|++++|||||++||+.+...+++.|..+. .++||++|||....... .
T Consensus       945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~ 1024 (1047)
T PRK10246        945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIP 1024 (1047)
T ss_pred             CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhcc
Confidence            4568999999999999999995        899999999999999999999999998885 57899999997777666 5


Q ss_pred             CEEEEEeC
Q 048556          465 DLIAVIHQ  472 (478)
Q Consensus       465 d~i~vl~~  472 (478)
                      .+|.|-..
T Consensus      1025 ~qi~V~k~ 1032 (1047)
T PRK10246       1025 VQIKVKKI 1032 (1047)
T ss_pred             ceEEEEEC
Confidence            67777654

>COG3910 Predicted ATPase [General function prediction only]

Probab=98.99  E-value=3.1e-09  Score=96.23  Aligned_cols=78  Identities=17%  Similarity=0.194  Sum_probs=64.7

Q ss_pred             CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 048556          398 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKL  475 (478)
Q Consensus       398 ~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i  475 (478)
                      ..-|.||-=.--+.|.+ ++.-++|||||-|+|.+.-+-.+...|+++. .+.-+|++||.+-.+.. --+|+-++.+.+
T Consensus       128 h~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~  206 (233)
T COG3910         128 HHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESGI  206 (233)
T ss_pred             hhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCCc
Confidence            56789988777777776 4667999999999999999999999998875 46789999999987766 578888888765


Q ss_pred             e
Q 048556          476 V  476 (478)
Q Consensus       476 ~  476 (478)
                      .
T Consensus       207 ~  207 (233)
T COG3910         207 E  207 (233)
T ss_pred             c
Confidence            3

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=98.98  E-value=9.3e-09  Score=99.12  Aligned_cols=148  Identities=16%  Similarity=0.227  Sum_probs=88.3

Q ss_pred             eecCCCEEEEEcCCCCChHHHHHHHhc-cCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHh-cCCC
Q 048556          285 SIPSGTTAALVGQSGSGKSTVISLIER-FYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNIN-YGKD  362 (478)
Q Consensus       285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g-~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~-~~~~  362 (478)
                      -+++|..+.|.|++|||||||...++- ... ..+.                   +.|+..+..  ...+.+|+. ++-+
T Consensus        21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~-------------------~~y~~~e~~--~~~~~~~~~~~g~~   78 (234)
T PRK06067         21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGKK-------------------VYVITTENT--SKSYLKQMESVKID   78 (234)
T ss_pred             CCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCCE-------------------EEEEEcCCC--HHHHHHHHHHCCCC
Confidence            589999999999999999999998852 222 2223                   334443221  112222222 1111


Q ss_pred             CCCHHHHHHHHHHhcHHHHHHhCCCCcccccc---CCCCCCChHHHHHHHHHHHHcC--CCCEEEEeCCCCCC---CHHH
Q 048556          363 GASIAEIMAAAELANAAKFIDSLPQGLDTMVG---EHGTQLSGGQKQRIAIARAILK--DPRILLLDEATSAL---DAES  434 (478)
Q Consensus       363 ~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~---~~g~~LSgGq~Qrl~lARall~--~~~ililDEpts~L---D~~~  434 (478)
                         .++            ++.   .|+-..+.   +.....|.++++.+..++..+.  +|+++++||||+.+   |...
T Consensus        79 ---~~~------------~~~---~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~  140 (234)
T PRK06067         79 ---ISD------------FFL---WGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDD  140 (234)
T ss_pred             ---hhH------------HHh---CCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHH
Confidence               101            100   01111100   1223456788999999999998  89999999999654   4444


Q ss_pred             HHHHHHHHHHhc-CCCeEEEEecCchh-------hhh-cCEEEEEeC
Q 048556          435 ERVVQEALDKIM-INRTTVIVAHRLST-------VRN-ADLIAVIHQ  472 (478)
Q Consensus       435 ~~~i~~~l~~~~-~~~t~i~itH~~~~-------~~~-~d~i~vl~~  472 (478)
                      ...+.+.++.+. .++|+++++|....       +.. +|-++.|+.
T Consensus       141 ~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~  187 (234)
T PRK06067        141 ILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA  187 (234)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence            455555555433 46899999997653       333 677777763

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=98.96  E-value=4.7e-09  Score=113.11  Aligned_cols=83  Identities=31%  Similarity=0.477  Sum_probs=72.9

Q ss_pred             Ccccc-ccCCCCCCChHHHHHHHHHHHHcCC--CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh
Q 048556          388 GLDTM-VGEHGTQLSGGQKQRIAIARAILKD--PRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN  463 (478)
Q Consensus       388 g~~t~-~~~~g~~LSgGq~Qrl~lARall~~--~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~  463 (478)
                      |++.. +.....+|||||.|||-||..+=..  -=+++||||+.||-+..-+++++.|++++ .++|+|+|.|+.++++.
T Consensus       469 GL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~  548 (935)
T COG0178         469 GLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRA  548 (935)
T ss_pred             CcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhh
Confidence            55542 3566789999999999999999665  35789999999999999999999999987 48999999999999999


Q ss_pred             cCEEEEE
Q 048556          464 ADLIAVI  470 (478)
Q Consensus       464 ~d~i~vl  470 (478)
                      ||+|+-|
T Consensus       549 AD~iIDi  555 (935)
T COG0178         549 ADHIIDI  555 (935)
T ss_pred             cCEEEee
Confidence            9999988

>TIGR00767 rho transcription termination factor Rho

Probab=98.95  E-value=1.9e-09  Score=109.86  Aligned_cols=83  Identities=11%  Similarity=0.219  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHccCCCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccc-----------cceeeecCCCEEEE
Q 048556          226 AGQAAAYKLFEAIERKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFN-----------GFSLSIPSGTTAAL  294 (478)
Q Consensus       226 ~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~-----------~is~~i~~G~~~~i  294 (478)
                      +...+.+|++++++.++...      ..+....+.++|+||+|.||+  ++++|+           |+++.|.+||.++|
T Consensus       102 R~~~~~ER~~~Ll~v~~vn~------~~~e~~~~ri~Fe~LTf~YP~--er~~Le~~~~~~~~R~id~~~pig~Gq~~~I  173 (415)
T TIGR00767       102 RSPKEGERYFALLKVESVNG------DDPEKAKNRVLFENLTPLYPN--ERLRLETSTEDLSTRVLDLFAPIGKGQRGLI  173 (415)
T ss_pred             eccccHhHHHHHhCCCccCC------CCccccCCCeEEEEeeecCCC--ccceeecCccccceeeeeeEEEeCCCCEEEE
Confidence            34567899999998765421      112233467999999999985  347896           99999999999999


Q ss_pred             EcCCCCChHHHHHHHhccCCCC
Q 048556          295 VGQSGSGKSTVISLIERFYDPQ  316 (478)
Q Consensus       295 vG~sGsGKSTL~~ll~g~~~~~  316 (478)
                      +||+|||||||++.+.+.+...
T Consensus       174 vG~~g~GKTtL~~~i~~~I~~n  195 (415)
T TIGR00767       174 VAPPKAGKTVLLQKIAQAITRN  195 (415)
T ss_pred             ECCCCCChhHHHHHHHHhhccc
Confidence            9999999999999999988643

Members of this family differ in the specificity of RNA binding.

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.93  E-value=9.7e-10  Score=103.59  Aligned_cols=69  Identities=28%  Similarity=0.380  Sum_probs=57.9

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccCC------------CCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHH
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFYD------------PQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIK  354 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~  354 (478)
                      ++|++++|+||||||||||++.|++.++            |..|+  ++|.+...++.+++++.   +.++.+++.+|+.
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~   77 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEM---IENGEFLEWAEVF   77 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHH---HHcCCcEEEEEEC
Confidence            5899999999999999999999999985            77888  68999888888888774   4577778888888


Q ss_pred             HHHhcCC
Q 048556          355 DNINYGK  361 (478)
Q Consensus       355 eNl~~~~  361 (478)
                      +|. ++.
T Consensus        78 ~~~-y~~   83 (205)
T PRK00300         78 GNY-YGT   83 (205)
T ss_pred             Ccc-ccC
Confidence            883 543

>PRK02224 chromosome segregation protein; Provisional

Probab=98.91  E-value=2.5e-09  Score=122.22  Aligned_cols=76  Identities=30%  Similarity=0.415  Sum_probs=66.7

Q ss_pred             CCCCChHHHH------HHHHHHHHcCC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHhcC-C-CeEEEEecCchhhh
Q 048556          397 GTQLSGGQKQ------RIAIARAILKD-----P-RILLLDEATSALDAESERVVQEALDKIMI-N-RTTVIVAHRLSTVR  462 (478)
Q Consensus       397 g~~LSgGq~Q------rl~lARall~~-----~-~ililDEpts~LD~~~~~~i~~~l~~~~~-~-~t~i~itH~~~~~~  462 (478)
                      ...|||||+|      |+++||++..+     | +++||||||++||+.....+.+.|..+.. + .++|+|||++..+.
T Consensus       779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~  858 (880)
T PRK02224        779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVG  858 (880)
T ss_pred             hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHH
Confidence            3589999999      99999999863     2 67999999999999999999999988753 3 47999999999998


Q ss_pred             hcCEEEEEeC
Q 048556          463 NADLIAVIHQ  472 (478)
Q Consensus       463 ~~d~i~vl~~  472 (478)
                      .||+++++..
T Consensus       859 ~ad~~~~~~~  868 (880)
T PRK02224        859 AADDLVRVEK  868 (880)
T ss_pred             hcCeeEEeec
Confidence            9999999964

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.87  E-value=1e-08  Score=106.33  Aligned_cols=86  Identities=16%  Similarity=0.296  Sum_probs=71.2

Q ss_pred             CccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEEC---CeecCCCCHHH
Q 048556          258 RGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID---GVNLKEFQLKW  334 (478)
Q Consensus       258 ~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~---g~~~~~~~~~~  334 (478)
                      ++.++.++++..|..  +..+++.++ ++.+||+++|+||||||||||+++|+++.+|+.|.|.+.   |.++.++..+.
T Consensus       137 p~~~~r~~v~~~l~T--Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~  213 (450)
T PRK06002        137 PPAMTRARVETGLRT--GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDT  213 (450)
T ss_pred             CCCeEeecceEEcCC--CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHH
Confidence            356899999999963  457898886 999999999999999999999999999999999998885   56666554433


Q ss_pred             ----hhcceEEEecCC
Q 048556          335 ----IRGKIGLVSQEP  346 (478)
Q Consensus       335 ----~r~~i~~v~Q~~  346 (478)
                          +++.|++|+|..
T Consensus       214 l~~~r~rtI~vV~qsd  229 (450)
T PRK06002        214 LADNLKKAVAVVATSD  229 (450)
T ss_pred             HHHhhCCeEEEEEcCC
Confidence                346799999965

>PRK13891 conjugal transfer protein TrbE; Provisional

Probab=98.72  E-value=4.6e-07  Score=102.72  Aligned_cols=54  Identities=28%  Similarity=0.367  Sum_probs=47.3

Q ss_pred             HHHHHcCCCCEEEEeCCCCCC-CHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh
Q 048556          410 IARAILKDPRILLLDEATSAL-DAESERVVQEALDKIM-INRTTVIVAHRLSTVRN  463 (478)
Q Consensus       410 lARall~~~~ililDEpts~L-D~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~  463 (478)
                      ++|++..+|+++++|||+.+| |+..++.+.+.++..+ .+.+++++||+++.+..
T Consensus       680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~  735 (852)
T PRK13891        680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN  735 (852)
T ss_pred             HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence            688999999999999999999 7889999999998775 47899999999987643

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.71  E-value=1.2e-08  Score=105.71  Aligned_cols=83  Identities=22%  Similarity=0.344  Sum_probs=65.0

Q ss_pred             CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCcc---EEEECCeecCCCCHHHh------hcceEEEecC
Q 048556          275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG---EVLIDGVNLKEFQLKWI------RGKIGLVSQE  345 (478)
Q Consensus       275 ~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G---~i~~~g~~~~~~~~~~~------r~~i~~v~Q~  345 (478)
                      +..+++++ |++.+||+++|+|+||+|||||+++|+|+++|+.+   .|-.+|.++.++..+.+      |..++++||+
T Consensus       142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d  220 (434)
T PRK07196        142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD  220 (434)
T ss_pred             ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence            34689999 99999999999999999999999999999998863   34445555555443333      4569999999


Q ss_pred             CCCCcc-cHHHHHh
Q 048556          346 PVLFTS-SIKDNIN  358 (478)
Q Consensus       346 ~~lf~~-ti~eNl~  358 (478)
                      ...+.. ++.+|..
T Consensus       221 ~s~~~rl~a~e~a~  234 (434)
T PRK07196        221 ESPLMRIKATELCH  234 (434)
T ss_pred             CChhhhHHHHHHHH
Confidence            887754 7777764

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=98.69  E-value=7e-08  Score=98.39  Aligned_cols=123  Identities=22%  Similarity=0.268  Sum_probs=79.2

Q ss_pred             ecCCCEEEEEcCCCCChHHHHHHHhccCCC-CccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCC
Q 048556          286 IPSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGA  364 (478)
Q Consensus       286 i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~  364 (478)
                      .+++..+.|.||+||||||+++.+.+.+++ .+|.|..-..++.-.    .....+.+.|                    
T Consensus       119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~----~~~~~~~i~q--------------------  174 (343)
T TIGR01420       119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV----HRNKRSLINQ--------------------  174 (343)
T ss_pred             hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh----ccCccceEEc--------------------
Confidence            467899999999999999999999997764 457765533332110    0000011111                    


Q ss_pred             CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048556          365 SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDK  444 (478)
Q Consensus       365 ~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~  444 (478)
                                                ..+|.....      -.-++++||-.+|+++++||+.   |+++....+++   
T Consensus       175 --------------------------~evg~~~~~------~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a---  216 (343)
T TIGR01420       175 --------------------------REVGLDTLS------FANALRAALREDPDVILIGEMR---DLETVELALTA---  216 (343)
T ss_pred             --------------------------cccCCCCcC------HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHH---
Confidence                                      011111111      1234677888999999999997   88877655554   


Q ss_pred             hcCCCeEEEEecCchhhhhcCEEEEE
Q 048556          445 IMINRTTVIVAHRLSTVRNADLIAVI  470 (478)
Q Consensus       445 ~~~~~t~i~itH~~~~~~~~d~i~vl  470 (478)
                      ...+.+++.+.|..+.....+|+.-|
T Consensus       217 a~tGh~v~~T~Ha~~~~~~~~Rl~~~  242 (343)
T TIGR01420       217 AETGHLVFGTLHTNSAAQTIERIIDV  242 (343)
T ss_pred             HHcCCcEEEEEcCCCHHHHHHHHHHh
Confidence            33577899999998887667776543

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PRK11098 microcin B17 transporter; Reviewed

Probab=98.68  E-value=3.7e-05  Score=79.40  Aligned_cols=191  Identities=8%  Similarity=-0.045  Sum_probs=129.0

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           41 IERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLL-------------TLVMLSSIPAIVLTAGVMSTVITK  107 (478)
Q Consensus        41 ~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------------~li~l~~~~~~~~~~~~~~~~~~~  107 (478)
                      =+|++.|+....+........++.+++.++..+.+++.+|..+             ..++++...+-.++..++++++-+
T Consensus       191 DQRIqEDi~~F~~~tl~L~~~li~si~tLisF~~ILW~LS~~l~~~~i~G~ipg~Lv~~aiiyai~GT~it~~vG~~L~~  270 (409)
T PRK11098        191 AQRVQEDTMRFASTLENLGVSFINAIMTLIAFLPVLVTLSAHVPELPIVGHIPYGLVIAAIVWSLFGTGLLAVVGIKLPG  270 (409)
T ss_pred             cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCchHHHHHHHHHHHHHHHHHHHHcccchh
Confidence            5799999999998888888999999999888887777777542             333344444444556677888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556          108 LASRGQTAYSIAAAVAEQTIGSIRTVASFTGEK-QAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYSLAIWFG  186 (478)
Q Consensus       108 ~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g  186 (478)
                      ..-+.++..++....+.-.-++.+     +.|. ...+++.+..+++.+......... ...   ..-..+..++-+.+.
T Consensus       271 Lnf~qqr~EAdFR~~LVrvrenaE-----~~E~~~L~~~F~~V~~N~~rl~~~~~~l~-~f~---~~y~~~~~i~P~iv~  341 (409)
T PRK11098        271 LEFKNQRVEAAYRKELVYGEDDAD-----RATPPTVRELFSNVRKNYFRLYFHYMYFN-IAR---ILYLQVDNVFGLFLL  341 (409)
T ss_pred             hHHHHHHHHHHHHHHHhHhhhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHH
Confidence            888888777777665543333333     2222 233444554444444332222222 222   222222333333334


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 048556          187 GKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIER  240 (478)
Q Consensus       187 ~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~  240 (478)
                      +.....|+++.|.+......+.....+++.+.+.+..+.+-.+..+|+.++.+.
T Consensus       342 aP~y~aG~ItlG~l~Q~~~AF~~V~~als~~v~sy~~lael~A~~~RL~~F~~~  395 (409)
T PRK11098        342 FPSIVAGTITLGLMTQITNVFGQVRGSFQYLINSWTTIVELLSIYKRLRSFEAA  395 (409)
T ss_pred             HHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566779999999999998888999899999999999999999999999998764

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.65  E-value=2.9e-08  Score=92.34  Aligned_cols=79  Identities=16%  Similarity=0.206  Sum_probs=58.4

Q ss_pred             ccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCC--CCc-ccHH
Q 048556          278 IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPV--LFT-SSIK  354 (478)
Q Consensus       278 ~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~--lf~-~ti~  354 (478)
                      ..+=+.+.+++|+.++|+||+|||||||++.|+++++|+.|.|.+.+..-...+   .+..+.++.|...  .+. -|..
T Consensus        14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~---~~~~~~~~~~~~~~~~~~~~~~~   90 (186)
T cd01130          14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP---HPNWVRLVTRPGNVEGSGEVTMA   90 (186)
T ss_pred             HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC---CCCEEEEEEecCCCCCCCccCHH
Confidence            455677889999999999999999999999999999999999999775432222   2345666665543  233 3666


Q ss_pred             HHHhc
Q 048556          355 DNINY  359 (478)
Q Consensus       355 eNl~~  359 (478)
                      +++..
T Consensus        91 ~~l~~   95 (186)
T cd01130          91 DLLRS   95 (186)
T ss_pred             HHHHH
Confidence            66643

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=98.63  E-value=3.4e-07  Score=95.74  Aligned_cols=171  Identities=19%  Similarity=0.268  Sum_probs=107.6

Q ss_pred             CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC---HHH-----hhcceEEEecCC
Q 048556          275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ---LKW-----IRGKIGLVSQEP  346 (478)
Q Consensus       275 ~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~---~~~-----~r~~i~~v~Q~~  346 (478)
                      +..+++++ +++.+||+++|+|+||+|||||++.|++..+|+.|.+...|..-.++.   .+.     +++.+.++.+..
T Consensus       150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d  228 (440)
T TIGR01026       150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSD  228 (440)
T ss_pred             eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCC
Confidence            35689999 999999999999999999999999999999999887777665433321   111     111222222211


Q ss_pred             CCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcccccc-CCCCCCChHHHHHHHHHHHHcCCCCEEEEeC
Q 048556          347 VLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVG-EHGTQLSGGQKQRIAIARAILKDPRILLLDE  425 (478)
Q Consensus       347 ~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~-~~g~~LSgGq~Qrl~lARall~~~~ililDE  425 (478)
                                      +...++...+.-...+.|++..  +|.|-.+= +.-.+          .|+|+= . ==+.+.|
T Consensus       229 ----------------~~p~~r~~~~~~a~t~AE~frd--~G~~Vll~~DslTr----------~A~A~R-E-isl~~ge  278 (440)
T TIGR01026       229 ----------------QSPLLRLKGAYVATAIAEYFRD--QGKDVLLLMDSVTR----------FAMAQR-E-IGLAAGE  278 (440)
T ss_pred             ----------------CCHHHHHHHHHHHHHHHHHHHH--CCCCEEEEEeChHH----------HHHHHH-H-HHHhcCC
Confidence                            1122333333333444566654  26654332 22221          222220 0 0022455


Q ss_pred             C--CCCCCHHHHHHHHHHHHHhcC-CC-------eEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          426 A--TSALDAESERVVQEALDKIMI-NR-------TTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       426 p--ts~LD~~~~~~i~~~l~~~~~-~~-------t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      |  +.|.|+.....+.+.+.+... ++       ||++-+|+++ -.-+|++.-+.||+|+.
T Consensus       279 ~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~-dpi~d~~~~i~dG~ivL  339 (440)
T TIGR01026       279 PPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN-EPIADSVRGILDGHIVL  339 (440)
T ss_pred             CCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC-cchhhhhccccceEEEE
Confidence            4  568999999999999988753 46       7888899983 23479999999999874

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>PRK12369 putative transporter; Reviewed

Probab=98.62  E-value=7.9e-05  Score=75.24  Aligned_cols=222  Identities=9%  Similarity=-0.042  Sum_probs=139.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 048556            4 WIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLL   83 (478)
Q Consensus         4 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   83 (478)
                      ..+.+.+...-+.+++.++-+..+. ..|+  +  |  +|++.|++...+........++.+++.++..+.+++.++..+
T Consensus        87 ~~~l~i~WR~wLT~~~l~~wl~~~~-~iDN--P--D--QRI~EDi~~f~~~tl~l~~~~i~s~~~l~sF~~iLW~lS~~l  159 (326)
T PRK12369         87 ASHYAFRWREAMTFSYLKFWRNKRD-NIEG--S--S--QRIQEDTYRFAKIMESLGLSFLRAIMTLIAFIPILWGLSDGV  159 (326)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCC-CCCC--c--c--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            3445556666666666666665331 1222  2  2  799999999999999999999999999888777777766333


Q ss_pred             ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchH-HHHHHHHHHHH
Q 048556           84 ------------TLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGE-KQAVAKYNESL  150 (478)
Q Consensus        84 ------------~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e-~~~~~~~~~~~  150 (478)
                                  ..++++...+-.++..++++++-+..-+.++..++....+...=++-+.   + .| ....++|.+..
T Consensus       160 ~~~~~g~ipg~lv~~aiiyai~gt~it~~iGr~L~~ln~~qq~~EAdFR~~Lvrvre~ae~---~-~E~~~l~~~f~~v~  235 (326)
T PRK12369        160 SLPFLKDIPGSLVWIALLISLGGLVISWFVGIKLPGLEYNNQKVEAAFRKELVYAEDDKKN---Y-AKPETLIELFTGLR  235 (326)
T ss_pred             eeeecCCCcchHHHHHHHHHHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHHHhhccchhh---h-hhHHHHHHHHHHHH
Confidence                        2233444444455666778888777777777777765544332111111   1 12 22334444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556          151 TKAYKSGVHEGLAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAA  230 (478)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a  230 (478)
                      +.+.+...+..+......    ....+..++-..+.+.....|+++.|.+......+.....++..+...+..+.+-.+.
T Consensus       236 ~n~~~~~~~~~~l~~~~~----~y~~~~~i~p~li~aP~y~sg~i~lG~l~Q~~~AF~~v~~als~~v~~y~~la~~~A~  311 (326)
T PRK12369        236 FNYFRLFLHYGYFNIWLI----SFSQMMVIVPYLIMAPGLFAGVITLGVLMQISNAFSQVRSSFSVFIRNWTTITELRSI  311 (326)
T ss_pred             HHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444333222222222222    2222222332333456677999999999998888888888999999999999999999


Q ss_pred             HHHHHHHHcc
Q 048556          231 AYKLFEAIER  240 (478)
Q Consensus       231 ~~ri~~~l~~  240 (478)
                      .+|+.++.+.
T Consensus       312 ~~RL~~f~~~  321 (326)
T PRK12369        312 YKRLKEFEKN  321 (326)
T ss_pred             HHHHHHHHHH
Confidence            9999988653

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=98.61  E-value=9.6e-08  Score=92.41  Aligned_cols=45  Identities=18%  Similarity=0.293  Sum_probs=36.5

Q ss_pred             HHcCCCCEEEEeCCCCC------CCHHHHHHHHHHHHHhc--CCCeEEEEecCc
Q 048556          413 AILKDPRILLLDEATSA------LDAESERVVQEALDKIM--INRTTVIVAHRL  458 (478)
Q Consensus       413 all~~~~ililDEpts~------LD~~~~~~i~~~l~~~~--~~~t~i~itH~~  458 (478)
                      +..++|+++|+| |+++      .|+.....+++.|.++.  .++|+++++|..
T Consensus       107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~  159 (239)
T cd01125         107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR  159 (239)
T ss_pred             HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence            335799999999 7654      69988888999887765  378999999976

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=98.60  E-value=8e-09  Score=110.04  Aligned_cols=156  Identities=16%  Similarity=0.175  Sum_probs=91.1

Q ss_pred             eecCCCEEEEEcCCCCChHHHHHHH--hccCCCCccEEEECCeecCCCCHHHhhcc---eEEEecCCCCCcccHHHHHhc
Q 048556          285 SIPSGTTAALVGQSGSGKSTVISLI--ERFYDPQAGEVLIDGVNLKEFQLKWIRGK---IGLVSQEPVLFTSSIKDNINY  359 (478)
Q Consensus       285 ~i~~G~~~~ivG~sGsGKSTL~~ll--~g~~~~~~G~i~~~g~~~~~~~~~~~r~~---i~~v~Q~~~lf~~ti~eNl~~  359 (478)
                      =+++|..+.|.||+|||||||..-.  .|..++.+.-+++...    -+.++++++   +++-.++..     -.+++.+
T Consensus        17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e----E~~~~l~~~~~~~G~~~~~~~-----~~g~l~~   87 (484)
T TIGR02655        17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE----ESPQDIIKNARSFGWDLQKLV-----DEGKLFI   87 (484)
T ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe----cCHHHHHHHHHHcCCCHHHHh-----hcCceEE
Confidence            4889999999999999999999876  3555444555666442    233444332   343333211     0011111


Q ss_pred             CCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH--HHHcCCCCEEEEeCCCCCCCHHHHHH
Q 048556          360 GKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIA--RAILKDPRILLLDEATSALDAESERV  437 (478)
Q Consensus       360 ~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lA--Rall~~~~ililDEpts~LD~~~~~~  437 (478)
                      -... .........+..++.+++           ......+|+|++||+.|+  .++..+|+..          ...++.
T Consensus        88 ~~~~-~~~~~~~~~~~~~l~~~l-----------~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~  145 (484)
T TIGR02655        88 LDAS-PDPEGQDVVGGFDLSALI-----------ERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRRE  145 (484)
T ss_pred             EecC-chhccccccccCCHHHHH-----------HHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHH
Confidence            1100 000000111112222222           223467899999999999  6666655433          456677


Q ss_pred             HHHHHHHhc-CCCeEEEEecCchh--------h-hh-cCEEEEEe
Q 048556          438 VQEALDKIM-INRTTVIVAHRLST--------V-RN-ADLIAVIH  471 (478)
Q Consensus       438 i~~~l~~~~-~~~t~i~itH~~~~--------~-~~-~d~i~vl~  471 (478)
                      +.+.++.+. .++|+|+++|+++.        + +. ||.|+.|+
T Consensus       146 l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~  190 (484)
T TIGR02655       146 IFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR  190 (484)
T ss_pred             HHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence            887777764 47999999998753        2 33 79999886

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.59  E-value=9.1e-07  Score=90.55  Aligned_cols=168  Identities=24%  Similarity=0.349  Sum_probs=110.8

Q ss_pred             EEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHh-ccCCC--CccEEEECCeecCCCCHHHhhcceEEE
Q 048556          266 IYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIE-RFYDP--QAGEVLIDGVNLKEFQLKWIRGKIGLV  342 (478)
Q Consensus       266 v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~-g~~~~--~~G~i~~~g~~~~~~~~~~~r~~i~~v  342 (478)
                      |++..|+.   ..+.+  +-|++| ++.|+|..--|||||+++|. |.|+.  .+|.=++                 --.
T Consensus       227 ve~~LP~~---g~v~G--MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipGDGRE~V-----------------VT~  283 (448)
T PF09818_consen  227 VEIELPNG---GTVTG--MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPGDGREFV-----------------VTD  283 (448)
T ss_pred             EEEECCCC---CEEEE--EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCCCCceEE-----------------EEC
Confidence            56666542   23444  579999 99999999999999999985 56653  4443221                 100


Q ss_pred             ecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEE
Q 048556          343 SQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILL  422 (478)
Q Consensus       343 ~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ili  422 (478)
                      +.-..+-              +.|-   +....+.+..||..||.|.||. .-.-.+=||-.-|=-.|..|+=..+++|+
T Consensus       284 ~~avkir--------------AEDG---R~V~~vDISpFI~~LP~g~dT~-~FsT~~ASGSTSqAAnI~EAlE~Ga~~LL  345 (448)
T PF09818_consen  284 PDAVKIR--------------AEDG---RSVEGVDISPFINNLPGGKDTT-CFSTENASGSTSQAANIMEALEAGARLLL  345 (448)
T ss_pred             CCceEEE--------------ecCC---ceEeCccchHHHhhCCCCCCCC-cccccCCCchHHHHHHHHHHHHcCCCEEE
Confidence            0000000              0000   1123344567999999999988 33456789999999999999999999999


Q ss_pred             EeCCCCCCCHHH-----HHHH----------HHHHHHhc--CC-CeEEEEecCchhhhhcCEEEEEeCCE
Q 048556          423 LDEATSALDAES-----ERVV----------QEALDKIM--IN-RTTVIVAHRLSTVRNADLIAVIHQGK  474 (478)
Q Consensus       423 lDEpts~LD~~~-----~~~i----------~~~l~~~~--~~-~t~i~itH~~~~~~~~d~i~vl~~G~  474 (478)
                      +||=|||-.-.-     ++-+          .+.++.+.  .+ .|++++.--=..+..||+|+.|++=+
T Consensus       346 iDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~  415 (448)
T PF09818_consen  346 IDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDEYR  415 (448)
T ss_pred             EcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecCcc
Confidence            999999974433     3333          33333442  23 45555555555678899999998744

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.57  E-value=1e-07  Score=100.17  Aligned_cols=61  Identities=18%  Similarity=0.320  Sum_probs=49.0

Q ss_pred             ccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhc
Q 048556          280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINY  359 (478)
Q Consensus       280 ~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~  359 (478)
                      ++.++.+++|++++++||||+||||++..|++.+.+..|.                 +.|+++++|+  |.-+..|++.+
T Consensus       247 ~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-----------------~kV~LI~~Dt--~RigA~EQLr~  307 (484)
T PRK06995        247 DSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA-----------------SKVALLTTDS--YRIGGHEQLRI  307 (484)
T ss_pred             cCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC-----------------CeEEEEeCCc--cchhHHHHHHH
Confidence            3445556789999999999999999999999988776664                 2578899887  55677888875

>PRK01889 GTPase RsgA; Reviewed

Probab=98.56  E-value=7.3e-08  Score=98.61  Aligned_cols=82  Identities=18%  Similarity=0.199  Sum_probs=68.6

Q ss_pred             ccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHH
Q 048556          278 IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNI  357 (478)
Q Consensus       278 ~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl  357 (478)
                      -++.+.-.+++|++++++|+||+|||||++.|+|...+..|+|.+++.....   ...++++.+++|+..+|+.+...|+
T Consensus       184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~DtpG~~~~  260 (356)
T PRK01889        184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDTPGMREL  260 (356)
T ss_pred             cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCCCchhhh
Confidence            4666777789999999999999999999999999999999999998754322   2235689999999999988888888


Q ss_pred             hcCCC
Q 048556          358 NYGKD  362 (478)
Q Consensus       358 ~~~~~  362 (478)
                      .+..+
T Consensus       261 ~l~~~  265 (356)
T PRK01889        261 QLWDA  265 (356)
T ss_pred             cccCc
Confidence            87653

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=98.55  E-value=1.3e-07  Score=96.65  Aligned_cols=72  Identities=24%  Similarity=0.332  Sum_probs=55.3

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccCCC--Ccc-EEEECCeecCCCCHHHhhcceEEEecCC-----CCCcccHHHHHh
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFYDP--QAG-EVLIDGVNLKEFQLKWIRGKIGLVSQEP-----VLFTSSIKDNIN  358 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G-~i~~~g~~~~~~~~~~~r~~i~~v~Q~~-----~lf~~ti~eNl~  358 (478)
                      ++|..++|+||+||||||+++.|++.+.+  .++ .|.....++ ++..+.+++..++++|..     .-|..+++++++
T Consensus       132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR  210 (358)
T TIGR02524       132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR  210 (358)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence            58999999999999999999999999853  334 565544444 576666666678888864     257789999888


Q ss_pred             c
Q 048556          359 Y  359 (478)
Q Consensus       359 ~  359 (478)
                      .
T Consensus       211 ~  211 (358)
T TIGR02524       211 R  211 (358)
T ss_pred             c
Confidence            6

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>PRK08149 ATP synthase SpaL; Validated

Probab=98.54  E-value=2.3e-07  Score=96.19  Aligned_cols=70  Identities=19%  Similarity=0.318  Sum_probs=60.1

Q ss_pred             CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCc---cEEEECCeecCCCCHHHhh----cceEEEecCC
Q 048556          276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA---GEVLIDGVNLKEFQLKWIR----GKIGLVSQEP  346 (478)
Q Consensus       276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~---G~i~~~g~~~~~~~~~~~r----~~i~~v~Q~~  346 (478)
                      ..+++++ +++.+||+++|+|+||+|||||+++|++..+++.   |.|-.+|.++.++..+.++    +++++|....
T Consensus       139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s  215 (428)
T PRK08149        139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS  215 (428)
T ss_pred             cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence            4689999 9999999999999999999999999999999987   9999999999887655544    5667776543

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.48  E-value=1.5e-07  Score=88.30  Aligned_cols=108  Identities=20%  Similarity=0.262  Sum_probs=61.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHH-----HHhcCCCCC-
Q 048556          291 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKD-----NINYGKDGA-  364 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~e-----Nl~~~~~~~-  364 (478)
                      +++|+||||||||||.+.|.+++  ..|.+.+-+.|                   .+...-+.++     +..+..|.. 
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D-------------------~~~~~~~~~~~~~~~~~~~~~~~~~   59 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQD-------------------SYYKDLSHEELEERKNNNYDHPDAF   59 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEec-------------------ccccccccccHHHhccCCCCCCCcc
Confidence            48999999999999999999998  33444433332                   2221111111     111222222 


Q ss_pred             CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 048556          365 SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE  433 (478)
Q Consensus       365 ~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~  433 (478)
                      +.+.+.         +.+..+-.|  ..+.....++|.|++++-.+   .+.+|+++|+|+|+...++.
T Consensus        60 ~~~~~~---------~~l~~l~~~--~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~  114 (198)
T cd02023          60 DFDLLI---------SHLQDLKNG--KSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKE  114 (198)
T ss_pred             cHHHHH---------HHHHHHHCC--CCEeccccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence            122221         122222112  22333345777887776554   56889999999999998753

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.47  E-value=1.7e-07  Score=87.05  Aligned_cols=55  Identities=24%  Similarity=0.294  Sum_probs=46.2

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCC
Q 048556          289 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEP  346 (478)
Q Consensus       289 G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~  346 (478)
                      |+.++|+||||||||||+++|++...|   .+.+++..+........++.+++++|+.
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~   56 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF   56 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence            789999999999999999999999876   5888888877665555667788888874

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=98.43  E-value=6e-07  Score=102.88  Aligned_cols=77  Identities=23%  Similarity=0.357  Sum_probs=66.4

Q ss_pred             CCCCCChHHHHHHHH------HHHHcCC--CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchhhhhcCE
Q 048556          396 HGTQLSGGQKQRIAI------ARAILKD--PRILLLDEATSALDAESERVVQEALDKIMI-NRTTVIVAHRLSTVRNADL  466 (478)
Q Consensus       396 ~g~~LSgGq~Qrl~l------ARall~~--~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~~d~  466 (478)
                      ...+|||||+=.++|      |..+..+  -+.++|||||.+||+++...+.+.|..+.. +++|++|||+.++...+|.
T Consensus       812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~~  891 (908)
T COG0419         812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERADV  891 (908)
T ss_pred             ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCCe
Confidence            457999999986555      4555667  699999999999999999999999998865 5999999999999999999


Q ss_pred             EEEEeC
Q 048556          467 IAVIHQ  472 (478)
Q Consensus       467 i~vl~~  472 (478)
                      ++.++.
T Consensus       892 ~i~V~k  897 (908)
T COG0419         892 RIRVKK  897 (908)
T ss_pred             EEEEEe
Confidence            988854

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=98.42  E-value=2.8e-07  Score=88.42  Aligned_cols=40  Identities=20%  Similarity=0.323  Sum_probs=30.8

Q ss_pred             eecCCCEEEEEcCCCCChHHHHHHHh-ccCCCCccEEEECC
Q 048556          285 SIPSGTTAALVGQSGSGKSTVISLIE-RFYDPQAGEVLIDG  324 (478)
Q Consensus       285 ~i~~G~~~~ivG~sGsGKSTL~~ll~-g~~~~~~G~i~~~g  324 (478)
                      -+++|+.+.|.||+|||||||+..++ ....+.++.+++..
T Consensus        16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~   56 (229)
T TIGR03881        16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT   56 (229)
T ss_pred             CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence            58999999999999999999988654 23345555666654

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.37  E-value=6.8e-07  Score=82.32  Aligned_cols=62  Identities=24%  Similarity=0.250  Sum_probs=47.5

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE-----------CCeecCCCCHHHhh-----cceEEEecCCCCCcc
Q 048556          289 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI-----------DGVNLKEFQLKWIR-----GKIGLVSQEPVLFTS  351 (478)
Q Consensus       289 G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~-----------~g~~~~~~~~~~~r-----~~i~~v~Q~~~lf~~  351 (478)
                      |+.++|+||||||||||++.|++.+.+. |.+.+           +|.+....+.+++.     +.++.+.|...++.|
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   78 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG   78 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence            6789999999999999999999987654 65544           66666666665553     348888998766655

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK13898 type IV secretion system ATPase VirB4; Provisional

Probab=98.37  E-value=2e-06  Score=97.39  Aligned_cols=49  Identities=16%  Similarity=0.305  Sum_probs=41.5

Q ss_pred             HHcCCCCEEEEeCCCCCCC-HHHHHHHHHHHHHhc-CCCeEEEEecCchhh
Q 048556          413 AILKDPRILLLDEATSALD-AESERVVQEALDKIM-INRTTVIVAHRLSTV  461 (478)
Q Consensus       413 all~~~~ililDEpts~LD-~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~  461 (478)
                      .+-.+|.++++|||...|| +...+.+.+.++..+ .+..++++||.++.+
T Consensus       638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~  688 (800)
T PRK13898        638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDA  688 (800)
T ss_pred             HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence            4567899999999999999 778888888888775 467899999998764

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.36  E-value=4.2e-07  Score=83.75  Aligned_cols=65  Identities=28%  Similarity=0.334  Sum_probs=45.0

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhc-ceEEEecCCCCC-cccHHHHHh
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRG-KIGLVSQEPVLF-TSSIKDNIN  358 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~-~i~~v~Q~~~lf-~~ti~eNl~  358 (478)
                      +||.++++|+||||||||++.|++++.+    +.++|.++...  ...|+ ..++.+|+...+ .-+..+|..
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~--~~~r~~~~g~~~~~~~~~~~~~~~~~~~   68 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPA--KNIDKMSQGIPLTDEDRLPWLERLNDAS   68 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCH--hHHHHHhcCCCCCcccchHHHHHHHHHH
Confidence            6999999999999999999999999887    58899887432  22222 245555554322 234444444

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=98.36  E-value=6.7e-07  Score=105.83  Aligned_cols=61  Identities=26%  Similarity=0.347  Sum_probs=54.4

Q ss_pred             CCCCCChHHHHHHH----HHHH--------HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCc
Q 048556          396 HGTQLSGGQKQRIA----IARA--------ILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRL  458 (478)
Q Consensus       396 ~g~~LSgGq~Qrl~----lARa--------ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~  458 (478)
                      ....||||||||++    +|++        +..+|++++|||||+++|+.+...+++.+.++  +.++|++||++
T Consensus      1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~~ 1316 (1353)
T TIGR02680      1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSERE 1316 (1353)
T ss_pred             cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccch
Confidence            45789999999996    5755        55799999999999999999999999999887  67899999987

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PLN03210 Resistant to P

Probab=98.36  E-value=1.5e-06  Score=102.07  Aligned_cols=44  Identities=23%  Similarity=0.268  Sum_probs=36.7

Q ss_pred             ceeeecCCCEEEEEcCCCCChHHHHHHHhccC-CCCccEEEECCe
Q 048556          282 FSLSIPSGTTAALVGQSGSGKSTVISLIERFY-DPQAGEVLIDGV  325 (478)
Q Consensus       282 is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~~~~G~i~~~g~  325 (478)
                      +++..+++++++|+|++|+|||||++.+.+.. ...+|.+++++.
T Consensus       200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~  244 (1153)
T PLN03210        200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA  244 (1153)
T ss_pred             HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecc
Confidence            56778889999999999999999999995544 456899988753

syringae 6; Provisional

>TIGR00101 ureG urease accessory protein UreG

Probab=98.35  E-value=9.8e-07  Score=82.97  Aligned_cols=104  Identities=16%  Similarity=0.153  Sum_probs=64.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCC--CHHH
Q 048556          291 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGA--SIAE  368 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~--~~~~  368 (478)
                      +++|+||+|||||||++.+.+.+.+..| +.+...+.......++.+..++++|++.+.   +..|   +.+..  .++-
T Consensus         3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~---g~~~~~~~~~~   75 (199)
T TIGR00101         3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPERILG---VETG---GCPHTAIREDA   75 (199)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCceeh---hhcC---CCccceeccCH
Confidence            6899999999999999999999887655 555555655555566666778889887542   1111   12211  1111


Q ss_pred             HHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHH
Q 048556          369 IMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQ  404 (478)
Q Consensus       369 ~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq  404 (478)
                      .   .....+.+++..+|++-...++..|..+|.-.
T Consensus        76 ~---~~~~~L~~l~~~~~~~D~iiIEt~G~~l~~~~  108 (199)
T TIGR00101        76 S---MNLEAVAEMEARFPPLEMVFIESGGDNLSATF  108 (199)
T ss_pred             H---HHHHHHHHHHhcCCCCCEEEEECCCCCccccc
Confidence            1   12333455556666555566777776665544

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK09183 transposase/IS protein; Provisional

Probab=98.34  E-value=1.8e-06  Score=84.50  Aligned_cols=52  Identities=19%  Similarity=0.320  Sum_probs=38.3

Q ss_pred             EEeEEEECCCCCCC---cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC
Q 048556          263 LKDIYFSYPSRPGE---QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP  315 (478)
Q Consensus       263 ~~~v~~~y~~~~~~---~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~  315 (478)
                      +++..|++....++   ..|.+++| +++|+.+.|+||+|+|||+|+..|+.....
T Consensus        74 l~~fd~~~~~~~~~~~i~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~~  128 (259)
T PRK09183         74 FEEYDFTFATGAPQKQLQSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAVR  128 (259)
T ss_pred             HhhcccccCCCCCHHHHHHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            44555555422112   24777888 999999999999999999999999765443

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.33  E-value=3.5e-06  Score=73.31  Aligned_cols=54  Identities=19%  Similarity=0.226  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc------CCCeEEEEecCch
Q 048556          405 KQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM------INRTTVIVAHRLS  459 (478)
Q Consensus       405 ~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~------~~~t~i~itH~~~  459 (478)
                      .+.....++...++.++++||.-.. +......+.+.+....      .+.++|++++...
T Consensus        72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~  131 (151)
T cd00009          72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL  131 (151)
T ss_pred             hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence            5556667777889999999998765 5566677777777653      4568888888654

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.33  E-value=2.2e-06  Score=86.25  Aligned_cols=72  Identities=22%  Similarity=0.221  Sum_probs=54.5

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCC------CCHHHhhcceEEEecCCCCCcc-cHHHHHh
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE------FQLKWIRGKIGLVSQEPVLFTS-SIKDNIN  358 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~------~~~~~~r~~i~~v~Q~~~lf~~-ti~eNl~  358 (478)
                      ++|++++++|||||||||++..|++.+.+..|+|.+.+.|...      +.....+..+.+++|.....+. ++++++.
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~  190 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQ  190 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHH
Confidence            5789999999999999999999999999988899998887643      2223345668899886544332 4455543

>TIGR00235 udk uridine kinase

Probab=98.33  E-value=3.2e-07  Score=86.81  Aligned_cols=29  Identities=38%  Similarity=0.479  Sum_probs=27.2

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccCCC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFYDP  315 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~  315 (478)
                      ++|++++|+||||||||||++.|.+++++
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~   32 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK   32 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            68999999999999999999999999864

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PLN02796 D-glycerate 3-kinase

Probab=98.28  E-value=3.6e-07  Score=91.83  Aligned_cols=61  Identities=15%  Similarity=0.217  Sum_probs=51.5

Q ss_pred             cccccceeee---cCCCE-----EEEEcCCCCChHHHHHHHhccCCCC---ccEEEECCeecCCCCHHHhhc
Q 048556          277 QIFNGFSLSI---PSGTT-----AALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGVNLKEFQLKWIRG  337 (478)
Q Consensus       277 ~~l~~is~~i---~~G~~-----~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~r~  337 (478)
                      .+++++++.+   ++|+.     +||+|++|||||||++.|.+++++.   .|.|.+||..+...+...+++
T Consensus        80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~  151 (347)
T PLN02796         80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE  151 (347)
T ss_pred             HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence            5788898887   67887     9999999999999999999999875   588999999887666566554

>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.27  E-value=0.00036  Score=69.20  Aligned_cols=168  Identities=11%  Similarity=-0.046  Sum_probs=128.1

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChh---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556            3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSG---EIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSK   79 (478)
Q Consensus         3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG---~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (478)
                      +...++.+....+...+.++.++-. .||.-....+   .-=+|+++|++.+.+........++..++.++.....++..
T Consensus        89 l~~~L~l~wR~~Lt~~~~~~yl~~~-~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~~L~~~  167 (281)
T PF06472_consen   89 LRQRLALRWREWLTRHLHDRYLSNR-TYYRLNNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSVILWSI  167 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCc-hhHhhhccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3445666666677777777776666 5555221222   45679999999999999999999999998888877777766


Q ss_pred             hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q 048556           80 GWLLTL-VMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGV  158 (478)
Q Consensus        80 ~~~l~l-i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~  158 (478)
                      +..+.. ++++..++..++..++++++.+...+.++..++.........++.+.|-.++-|+.+.++.++..++..+...
T Consensus       168 ~g~~~~~~~~~y~~~~t~~~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l~~~~~  247 (281)
T PF06472_consen  168 SGWLGPWAALIYAILGTLITHWIGPPLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDRRFDALIDNWR  247 (281)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHHHHHHHH
Confidence            666666 5666666777788899999999999999999999999999999999999999999999998888877666554


Q ss_pred             HHHHHHHHHHHHH
Q 048556          159 HEGLAAGLGFGAF  171 (478)
Q Consensus       159 ~~~~~~~~~~~~~  171 (478)
                      +..+.......+.
T Consensus       248 ~~~~~~~~~~~~~  260 (281)
T PF06472_consen  248 RLIRRRLRLGFFT  260 (281)
T ss_pred             HHHHHHHHHHHHH
Confidence            4444444443333

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=98.25  E-value=4.6e-06  Score=94.48  Aligned_cols=66  Identities=24%  Similarity=0.198  Sum_probs=44.0

Q ss_pred             CChHHHHHHHHHHHHcC--CCCEEEEeCC---CCCCCHHH-HHHHHHHHHHhcCCCeEEEEecCchhhhhcCE
Q 048556          400 LSGGQKQRIAIARAILK--DPRILLLDEA---TSALDAES-ERVVQEALDKIMINRTTVIVAHRLSTVRNADL  466 (478)
Q Consensus       400 LSgGq~Qrl~lARall~--~~~ililDEp---ts~LD~~~-~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~  466 (478)
                      +|--+.....+++++-+  ++.++|+|||   |+.+|... ...+.+.+.+. .+++++++||..+....+++
T Consensus       667 ~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~-~~~~~l~aTH~~el~~l~~~  738 (854)
T PRK05399        667 RSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDK-IGAKTLFATHYHELTELEEK  738 (854)
T ss_pred             cccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhc-CCceEEEEechHHHHHHhhh
Confidence            45555666667766655  7899999999   88888554 22344444331 24799999999666554543

>COG3044 Predicted ATPase of the ABC class [General function prediction only]

Probab=98.24  E-value=1.6e-05  Score=80.12  Aligned_cols=155  Identities=26%  Similarity=0.347  Sum_probs=101.5

Q ss_pred             eeecCCCEEEEEcCCCCChHHHHHHHhccC-C--CCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcC
Q 048556          284 LSIPSGTTAALVGQSGSGKSTVISLIERFY-D--PQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG  360 (478)
Q Consensus       284 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~--~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~  360 (478)
                      +-|++| +..|+|++--|||||+++|..-. +  |-+|.=++    +++..       .+++.-          +|... 
T Consensus       238 mgIp~g-it~ItG~nfhGKTTLl~Aie~gvdnHipGDGRE~v----VTd~~-------lakaea----------e~gr~-  294 (554)
T COG3044         238 MGIPQG-ITLITGGNFHGKTTLLTAIERGVDNHIPGDGRERV----VTDVK-------LAKAEA----------EEGRC-  294 (554)
T ss_pred             cCCCcc-eEEEecCCccchhHHHHHHHhcccccCCCCCceEE----Eehhh-------hhhhhc----------cccee-
Confidence            568999 99999999999999999996533 2  33443221    01100       000000          11110 


Q ss_pred             CCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHH------
Q 048556          361 KDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES------  434 (478)
Q Consensus       361 ~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~------  434 (478)
                                  ..-..+.-|+++||.|=+|.-.-.| .=||-..|=-.|=||+=..++.+++||=+|+....-      
T Consensus       295 ------------vsg~D~SlFi~~LPggkdTp~fvtg-dASGStsmAa~IQeaiEagak~lliDED~sAtNllvrdVlak  361 (554)
T COG3044         295 ------------VSGLDLSLFINHLPGGKDTPDFVTG-DASGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVRDVLAK  361 (554)
T ss_pred             ------------eeccchHHHHHhCCCCCCCcccccC-CCCchhHHHHHHHHHHHcCCcEEEEccCcchhheehhhHHHH
Confidence                        0112234699999977788876555 479999999999999999999999999999974321      


Q ss_pred             ----HH---HHHHHHHHhcCC-CeEEEEecCchh-hhhcCEEEEEeCCE
Q 048556          435 ----ER---VVQEALDKIMIN-RTTVIVAHRLST-VRNADLIAVIHQGK  474 (478)
Q Consensus       435 ----~~---~i~~~l~~~~~~-~t~i~itH~~~~-~~~~d~i~vl~~G~  474 (478)
                          ++   .+.+-+.+...+ -++|+||--+.. ...+||++||+|=+
T Consensus       362 e~eG~rtl~pl~dei~s~~gd~iS~iaVtgglddlla~aDRaIvMeDhr  410 (554)
T COG3044         362 ESEGERTLTPLVDEIGSLRGDLISTIAVTGGLDDLLAVADRAIVMEDHR  410 (554)
T ss_pred             HhcCcccchHHHHhhhhhccCceEEEEEeccchhhhhhcceEEEecccC
Confidence                12   233333333333 677777777664 56699999998744

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=98.23  E-value=3e-06  Score=81.51  Aligned_cols=72  Identities=22%  Similarity=0.296  Sum_probs=45.9

Q ss_pred             eecCCCEEEEEcCCCCChHHHHHHHhcc-CCC------CccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHH
Q 048556          285 SIPSGTTAALVGQSGSGKSTVISLIERF-YDP------QAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNI  357 (478)
Q Consensus       285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~-~~~------~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl  357 (478)
                      =+++|+++.|+||+|||||||+..++.. ..|      ..+.+++++.+  ..+.+.+.+..    |.......++.+|+
T Consensus        15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~--~~~~~rl~~~~----~~~~~~~~~~~~~i   88 (235)
T cd01123          15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG--TFRPERLVQIA----ERFGLDPEEVLDNI   88 (235)
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC--CcCHHHHHHHH----HHhccChHhHhcCE
Confidence            3889999999999999999999988743 333      36778887765  23333333221    11111233566777


Q ss_pred             hcCCC
Q 048556          358 NYGKD  362 (478)
Q Consensus       358 ~~~~~  362 (478)
                      .+..+
T Consensus        89 ~~~~~   93 (235)
T cd01123          89 YVARA   93 (235)
T ss_pred             EEEec
Confidence            66554

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>PRK06315 type III secretion system ATPase; Provisional

Probab=98.22  E-value=1.3e-06  Score=90.90  Aligned_cols=83  Identities=18%  Similarity=0.346  Sum_probs=61.6

Q ss_pred             CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-CccEEEE---CCeecCCCCHHHhh---cceEEE-----e
Q 048556          276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVLI---DGVNLKEFQLKWIR---GKIGLV-----S  343 (478)
Q Consensus       276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-~~G~i~~---~g~~~~~~~~~~~r---~~i~~v-----~  343 (478)
                      ..+++++ |++.+||+++|+|+||||||||++.|+|..++ +.|.|.+   .|.++.++..+.++   .+.+++     +
T Consensus       152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~  230 (442)
T PRK06315        152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD  230 (442)
T ss_pred             EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence            3578887 99999999999999999999999999999854 4466766   45677666555554   235555     8


Q ss_pred             cCCC------CCcccHHHHHhc
Q 048556          344 QEPV------LFTSSIKDNINY  359 (478)
Q Consensus       344 Q~~~------lf~~ti~eNl~~  359 (478)
                      |+|.      ....++.|.+..
T Consensus       231 q~p~~rlnp~~va~~IAE~~r~  252 (442)
T PRK06315        231 QSSQLRLNAAYVGTAIAEYFRD  252 (442)
T ss_pred             CCHHHHhhHHHHHHHHHHHHHH
Confidence            8763      222378888864

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=98.22  E-value=6.3e-06  Score=90.23  Aligned_cols=110  Identities=22%  Similarity=0.231  Sum_probs=66.8

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccCCCCcc--------EEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhc
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFYDPQAG--------EVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINY  359 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G--------~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~  359 (478)
                      ..+.++|+||+|+|||||++++.++..+..|        -+.+||.++. ++...+                   .|-.+
T Consensus       174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-~d~~~i-------------------~~~ll  233 (615)
T TIGR02903       174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-WDPREV-------------------TNPLL  233 (615)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-CCHHHH-------------------hHHhc
Confidence            3467999999999999999999998865443        4777776552 222221                   11122


Q ss_pred             CCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHH
Q 048556          360 GKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQ  439 (478)
Q Consensus       360 ~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~  439 (478)
                      +..  .+.....+      .+.+...  |+..........+|||                +|+||| +..||+.....+.
T Consensus       234 g~~--~~~~~~~a------~~~l~~~--gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll  286 (615)
T TIGR02903       234 GSV--HDPIYQGA------RRDLAET--GVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLL  286 (615)
T ss_pred             CCc--cHHHHHHH------HHHHHHc--CCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHH
Confidence            221  11000011      1111111  3322223334567777                999999 7999999999999


Q ss_pred             HHHHH
Q 048556          440 EALDK  444 (478)
Q Consensus       440 ~~l~~  444 (478)
                      +.+++
T Consensus       287 ~~Le~  291 (615)
T TIGR02903       287 KVLED  291 (615)
T ss_pred             HHHhh
Confidence            98865

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>TIGR00152 dephospho-CoA kinase

Probab=98.20  E-value=7.6e-07  Score=82.87  Aligned_cols=69  Identities=16%  Similarity=0.183  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchh--h-hhcCEEEEEeCC
Q 048556          403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI-NRTTVIVAHRLST--V-RNADLIAVIHQG  473 (478)
Q Consensus       403 Gq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~--~-~~~d~i~vl~~G  473 (478)
                      |+-+|..||.++..+|+.+..+|  +-+||...+.+.+.+.+... +.++++.+|.+..  + ..||.+++++.+
T Consensus        61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~  133 (188)
T TIGR00152        61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS  133 (188)
T ss_pred             CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence            77899999999999999988777  78999999999999987653 3699999999854  3 459999999876

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PRK13873 conjugal transfer ATPase TrbE; Provisional

Probab=98.18  E-value=2.3e-05  Score=88.92  Aligned_cols=61  Identities=20%  Similarity=0.239  Sum_probs=46.9

Q ss_pred             HHcCCCCEEEEeCCCCCCC-HHHHHHHHHHHHHhc-CCCeEEEEecCchhh----------hhcCEEEEEeCC
Q 048556          413 AILKDPRILLLDEATSALD-AESERVVQEALDKIM-INRTTVIVAHRLSTV----------RNADLIAVIHQG  473 (478)
Q Consensus       413 all~~~~ililDEpts~LD-~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~----------~~~d~i~vl~~G  473 (478)
                      .+-.+|+++++|||+..|| +...+.+.+.++..+ .+.+++++||+++.+          ++|+..+.|.+.
T Consensus       631 ~~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~s~~~~~il~n~~t~i~L~~~  703 (811)
T PRK13873        631 RFDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADIDGSAIAPAIIESCPTRIFLPNE  703 (811)
T ss_pred             HhcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHhcCchHHHHHHhCCeeEEcCCc
Confidence            3445899999999999999 667888888887764 468999999998754          345655555553

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=98.15  E-value=6.4e-07  Score=79.09  Aligned_cols=66  Identities=30%  Similarity=0.476  Sum_probs=47.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCCC-------------CccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHH
Q 048556          291 TAALVGQSGSGKSTVISLIERFYDP-------------QAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNI  357 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~~-------------~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl  357 (478)
                      .++|+||||||||||++.|++.+++             ..|+  .+|++..-++.+++.+   .+.++.++..++...| 
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e--~~g~~~~~v~~~~~~~---~~~~~~f~e~~~~~~~-   74 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE--VDGVDYHFVSKEEFER---LIENGEFLEWAEFHGN-   74 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc--cCCceeEEeCHHHHHH---HHHcCCeEEEEEEcCE-
Confidence            3789999999999999999999754             3344  4677666667666665   3456666666677777 


Q ss_pred             hcCCC
Q 048556          358 NYGKD  362 (478)
Q Consensus       358 ~~~~~  362 (478)
                      .+|.+
T Consensus        75 ~yg~~   79 (137)
T cd00071          75 YYGTS   79 (137)
T ss_pred             EecCc
Confidence            35543

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	478
3g5u_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		1e-123
3g60_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		1e-123
4f4c_A	1321	The Crystal Structure Of The Multi-Drug Transporter		1e-109
4ayt_A	595	Structure Of The Human Mitochondrial Abc Transporte		3e-89
4ayw_A	619	Structure Of The Human Mitochondrial Abc Transporte		3e-88
3qf4_B	598	Crystal Structure Of A Heterodimeric Abc Transporte		4e-67
3b5x_A	582	Crystal Structure Of Msba From Vibrio Cholerae Leng		8e-66
3b5w_A	582	Crystal Structure Of Eschericia Coli Msba Length =		6e-65
3b5y_A	582	Crystal Structure Of Msba From Salmonella Typhimuri		8e-65
2hyd_A	578	Multidrug Abc Transporter Sav1866 Length = 578		2e-54
3qf4_A	587	Crystal Structure Of A Heterodimeric Abc Transporte		2e-52
2ghi_A	260	Crystal Structure Of Plasmodium Yoelii Multidrug Re		5e-52
1mt0_A	241	Atp-Binding Domain Of Haemolysin B From Escherichia		2e-50
2ff7_A	247	The Abc-Atpase Of The Abc-Transporter Hlyb In The A		2e-50
2pmk_A	243	Crystal Structures Of An Isolated Abc-Atpase In Com		2e-50
3b5j_A	243	Crystal Structures Of The S504a Mutant Of An Isolat		4e-50
2ffb_A	247	The Crystal Structure Of The Hlyb-Nbd E631q Mutant		4e-50
3nh6_A	306	Nucleotide Binding Domain Of Human Abcb6 (Apo Struc		1e-49
1xef_A	241	Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI		3e-49
2ffa_A	247	Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr		3e-49
1mv5_A	243	Crystal Structure Of Lmra Atp-Binding Domain Length		3e-46
2ixf_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		4e-43
2ixe_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		8e-42
1jj7_A	260	Crystal Structure Of The C-Terminal Atpase Domain O		2e-40
2ixg_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		2e-40
3dhw_C	343	Crystal Structure Of Methionine Importer Metni Leng		2e-23
3tui_C	366	Inward Facing Conformations Of The Metni Methionine		5e-23
3tuj_C	366	Inward Facing Conformations Of The Metni Methionine		4e-22
2cbz_A	237	Structure Of The Human Multidrug Resistance Protein		2e-20
3gd7_A	390	Crystal Structure Of Human Nbd2 Complexed With N6-		3e-20
2it1_A	362	Structure Of Ph0203 Protein From Pyrococcus Horikos		9e-20
3c41_J	242	Abc Protein Artp In Complex With Amp-PnpMG2+ Length		8e-19
2olj_A	263	Abc Protein Artp In Complex With AdpMG2+ Length = 2		9e-19
1r0z_A	286	Phosphorylated Cystic Fibrosis Transmembrane Conduc		2e-18
1q3h_A	286	Mouse Cftr Nbd1 With Amp.Pnp Length = 286		2e-18
2yyz_A	359	Crystal Structure Of Sugar Abc Transporter, Atp-Bin		2e-18
3d31_A	348	Modbc From Methanosarcina Acetivorans Length = 348		5e-18
1xfa_A	283	Structure Of Nbd1 From Murine Cftr- F508r Mutant Le		7e-18
1xf9_A	283	Structure Of Nbd1 From Murine Cftr- F508s Mutant Le		7e-18
1z47_A	355	Structure Of The Atpase Subunit Cysa Of The Putativ		1e-17
3si7_A	285	The Crystal Structure Of The Nbd1 Domain Of The Mou		2e-17
4fwi_B	334	Crystal Structure Of The Nucleotide-binding Domain		8e-16
2bbt_A	290	Human Deltaf508 Nbd1 With Two Solublizing Mutations		1e-15
2pze_A	229	Minimal Human Cftr First Nucleotide Binding Domain		2e-15
2pzg_A	241	Minimal Human Cftr First Nucleotide Binding Domain		2e-15
1l2t_A	235	Dimeric Structure Of Mj0796, A Bacterial Abc Transp		2e-15
1f3o_A	235	Crystal Structure Of Mj0796 Atp-Binding Cassette Le		3e-15
1xmi_A	291	Crystal Structure Of Human F508a Nbd1 Domain With A		6e-15
2bbs_A	290	Human Deltaf508 Nbd1 With Three Solubilizing Mutati		7e-15
3tif_A	235	Dimeric Structure Of A Post-Hydrolysis State Of The		7e-15
2onk_A	240	Abc Transporter Modbc In Complex With Its Binding P		9e-15
4hlu_A	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		2e-14
2pzf_A	228	Minimal Human Cftr First Nucleotide Binding Domain		2e-14
2yz2_A	266	Crystal Structure Of The Abc Transporter In The Cob		2e-14
4hlu_D	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		3e-14
3fvq_A	359	Crystal Structure Of The Nucleotide Binding Domain		4e-14
2bbo_A	291	Human Nbd1 With Phe508 Length = 291		1e-13
1vci_A	373	Crystal Structure Of The Atp-binding Cassette Of Mu		1e-12
1v43_A	372	Crystal Structure Of Atpase Subunit Of Abc Sugar Tr		1e-12
1xmj_A	290	Crystal Structure Of Human Deltaf508 Human Nbd1 Dom		1e-12
1b0u_A	262	Atp-Binding Subunit Of The Histidine Permease From		2e-12
1oxs_C	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		2e-12
4g1u_C	266	X-Ray Structure Of The Bacterial Heme Transporter H		3e-12
3gfo_A	275	Structure Of Cbio1 From Clostridium Perfringens: Pa		5e-12
1g29_1	372	Malk Length = 372		8e-12
1oxx_K	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		9e-12
2pcj_A	224	Crystal Structure Of Abc Transporter (Aq_297) From		2e-11
2d62_A	375	Crystal Structure Of Multiple Sugar Binding Transpo		1e-10
1vpl_A	256	Crystal Structure Of Abc Transporter Atp-binding Pr		2e-10
2nq2_C	253	An Inward-Facing Conformation Of A Putative Metal-C		3e-09
1q12_A	381	Crystal Structure Of The Atp-bound E. Coli Malk Len		4e-09
1q1b_A	381	Crystal Structure Of E. Coli Malk In The Nucleotide		5e-09
2d2e_A	250	Crystal Structure Of Atypical Cytoplasmic Abc-Atpas		7e-09
2r6g_A	381	The Crystal Structure Of The E. Coli Maltose Transp		1e-08
1ji0_A	240	Crystal Structure Analysis Of The Abc Transporter F		2e-08
3bk7_A	607	Structure Of The Complete Abce1RNAASE-L Inhibitor P		6e-07
3j15_B	593	Model Of Ribosome-Bound Archaeal Pelota And Abce1 L		7e-07
2zu0_C	267	Crystal Structure Of Sufc-Sufd Complex Involved In		1e-06
2d3w_A	248	Crystal Structure Of Escherichia Coli Sufc, An Atpa		1e-06
1g9x_A	257	Characterization Of The Twinning Structure Of Mj126		5e-06
1g6h_A	257	Crystal Structure Of The Adp Conformation Of Mj1267		9e-06
1sgw_A	214	Putative Abc Transporter (Atp-Binding Protein) From		1e-05
1gaj_A	257	Crystal Structure Of A Nucleotide-Free Atp-Binding		2e-05
1yqt_A	538	Rnase-L Inhibitor Length = 538		2e-05
3j16_B	608	Models Of Ribosome-Bound Dom34p And Rli1p And Their		4e-05
3pih_A	916	T. Maritima Uvra In Complex With Fluorescein-Modifi		7e-05
2iwh_A	986	Structure Of Yeast Elongation Factor 3 In Complex W		1e-04
3ozx_A	538	Crystal Structure Of Abce1 Of Sulfolubus Solfataric		2e-04
2iw3_A	986	Elongation Factor 3 In Complex With Adp Length = 98		6e-04
2ix8_A	976	Model For Eef3 Bound To An 80s Ribosome Length = 97		6e-04
2ihy_A	279	Structure Of The Staphylococcus Aureus Putative Atp		7e-04
2vf7_A	842	Crystal Structure Of Uvra2 From Deinococcus Radiodu		9e-04

>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score =  439 bits (1128), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/479 (45%), Positives = 314/479 (65%), Gaps = 3/479 (0%)
Query: 1   VACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHS-GEIIERMSGDTVLIQDSIGEKV 59
           V+ W +   RQ  +IR  +   ++ Q+IG+FD   H  GE+  R++ D   I + IG+K+
Sbjct: 129 VSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFD--VHDVGELNTRLTDDVSKINEGIGDKI 186
Query: 60  GKFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIA 119
           G F Q +ATF GGF+I  ++GW LTLV+L+  P + L+AG+ + +++    +   AY+ A
Sbjct: 187 GMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKA 246
Query: 120 AAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEXXXXXXXXXXXXXXXXSSY 179
            AVAE+ + +IRTV +F G+K+ + +YN +L +A + G+ +                +SY
Sbjct: 247 GAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASY 306
Query: 180 SLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIE 239
           +LA W+G  +++ K Y  G V+ V F V+IG+ S+GQASP I AFA  + AAY++F+ I+
Sbjct: 307 ALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIID 366
Query: 240 RKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSG 299
            KP ID++  +G K D+I+G++E K+I+FSYPSR   QI  G +L + SG T ALVG SG
Sbjct: 367 NKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSG 426
Query: 300 SGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINY 359
            GKST + L++R YDP  G V IDG +++   ++++R  IG+VSQEPVLF ++I +NI Y
Sbjct: 427 CGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRY 486
Query: 360 GKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR 419
           G++                  FI  LP   DT+VGE G QLSGGQKQRIAIARA++++P+
Sbjct: 487 GREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPK 546
Query: 420 ILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
           ILLLDEATSALD ESE VVQ ALDK    RTT+++AHRLSTVRNAD+IA    G +VE+
Sbjct: 547 ILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQ 605

>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score =  439 bits (1128), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/479 (45%), Positives = 314/479 (65%), Gaps = 3/479 (0%)
Query: 1   VACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHS-GEIIERMSGDTVLIQDSIGEKV 59
           V+ W +   RQ  +IR  +   ++ Q+IG+FD   H  GE+  R++ D   I + IG+K+
Sbjct: 129 VSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFD--VHDVGELNTRLTDDVSKINEGIGDKI 186
Query: 60  GKFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIA 119
           G F Q +ATF GGF+I  ++GW LTLV+L+  P + L+AG+ + +++    +   AY+ A
Sbjct: 187 GMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKA 246
Query: 120 AAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEXXXXXXXXXXXXXXXXSSY 179
            AVAE+ + +IRTV +F G+K+ + +YN +L +A + G+ +                +SY
Sbjct: 247 GAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASY 306
Query: 180 SLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIE 239
           +LA W+G  +++ K Y  G V+ V F V+IG+ S+GQASP I AFA  + AAY++F+ I+
Sbjct: 307 ALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIID 366
Query: 240 RKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSG 299
            KP ID++  +G K D+I+G++E K+I+FSYPSR   QI  G +L + SG T ALVG SG
Sbjct: 367 NKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSG 426
Query: 300 SGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINY 359
            GKST + L++R YDP  G V IDG +++   ++++R  IG+VSQEPVLF ++I +NI Y
Sbjct: 427 CGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRY 486
Query: 360 GKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR 419
           G++                  FI  LP   DT+VGE G QLSGGQKQRIAIARA++++P+
Sbjct: 487 GREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPK 546
Query: 420 ILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
           ILLLDEATSALD ESE VVQ ALDK    RTT+++AHRLSTVRNAD+IA    G +VE+
Sbjct: 547 ILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQ 605

>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321

Iteration: 1
 Score =  391 bits (1005), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/477 (41%), Positives = 300/477 (62%), Gaps = 1/477 (0%)
Query: 1   VACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVG 60
           V C++   E+   R+R  ++K++LRQ+I +FD   HSG +  ++  +   +++  G+K+G
Sbjct: 157 VTCYLYVAEQMNNRLRREFVKSILRQEISWFDT-NHSGTLATKLFDNLERVKEGTGDKIG 215
Query: 61  KFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAA 120
              Q L+ FI GF++A +  W LTLVML+  P   L    ++  ++  A R    Y+ A 
Sbjct: 216 MAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAG 275
Query: 121 AVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEXXXXXXXXXXXXXXXXSSYS 180
            V E+TI SIRTV S  G +  + +Y+ ++ +A K+GV +                 S++
Sbjct: 276 KVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFA 335
Query: 181 LAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIER 240
           LA + G   + +     GD++     VM+GSM+LG A P ++     Q AA  ++E ++R
Sbjct: 336 LAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDR 395
Query: 241 KPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGS 300
           KP+ID+    G K   I+GDI +++++F+YPSRP   I  G +L + +G T ALVG SG 
Sbjct: 396 KPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGC 455
Query: 301 GKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG 360
           GKST+ISL+ R+YD   G++ IDGV++++  L+++R  + +VSQEP LF  +I++NI+ G
Sbjct: 456 GKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLG 515
Query: 361 KDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420
           K+G                KFI +LP G +T+VG+ GTQLSGGQKQRIAIARA++++P+I
Sbjct: 516 KEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKI 575
Query: 421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
           LLLDEATSALDAESE +VQ+ALDK    RTT+I+AHRLST+RNADLI     G++VE
Sbjct: 576 LLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVE 632

>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595

Iteration: 1
 Score =  325 bits (833), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 191/494 (38%), Positives = 286/494 (57%), Gaps = 44/494 (8%)
Query: 7   TGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLL 66
           +G+R   R+R     ++LRQ++ FFDK T +GE+I R+S DT L+  S+ E +   ++  
Sbjct: 89  SGQRIVNRLRTSLFSSILRQEVAFFDK-TRTGELINRLSSDTALLGRSVTENLSDGLRAG 147
Query: 67  ATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQT 126
           A    G  +       L   +LS +P + + A +    + KL    Q + + A  +AE+ 
Sbjct: 148 AQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEER 207
Query: 127 IGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEXXXXXXXXXXXXXXXXSSYSLAIWFG 186
           IG++RTV +F  E   + KY   +    +    E                 +++ A +FG
Sbjct: 208 IGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKE-----------------AFARAGFFG 250
Query: 187 GK------MILEKGYKGGDVIN------------VIFCVMIGSMSLGQASPCISAFAAGQ 228
                   ++L   YKGG ++             +++   +G +S+G  S   S    G 
Sbjct: 251 ATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVG-ISIGGLSSFYSELMKGL 309
Query: 229 AAAYKLFEAIERKPLIDAYDSNGVKLDD--IRGDIELKDIYFSYPSRPGEQIFNGFSLSI 286
            A  +L+E +ER+P +    + GV L++   +G +E K+++F+YP+RP   IF  FSLSI
Sbjct: 310 GAGGRLWELLEREPKLPF--NEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSI 367
Query: 287 PSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEP 346
           PSG+  ALVG SGSGKSTV+SL+ R YDP +G + +DG ++++    W+R KIG VSQEP
Sbjct: 368 PSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 427
Query: 347 VLFTSSIKDNINYGKDGXXXXXX---XXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGG 403
           +LF+ SI +NI YG D                     FI + PQG +T+VGE G  LSGG
Sbjct: 428 ILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGG 487
Query: 404 QKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN 463
           QKQRIAIARA+LK+P+ILLLDEATSALDAE+E +VQEALD++M  RT +++AHRLST++N
Sbjct: 488 QKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKN 547
Query: 464 ADLIAVIHQGKLVE 477
           A+++AV+ QGK+ E
Sbjct: 548 ANMVAVLDQGKITE 561

>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619

Iteration: 1
 Score =  322 bits (825), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 190/494 (38%), Positives = 285/494 (57%), Gaps = 44/494 (8%)
Query: 7   TGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLL 66
           +G+R   R+R     ++LRQ++ FFDK T +GE+I R+S DT L+  S+ E +   ++  
Sbjct: 120 SGQRIVNRLRTSLFSSILRQEVAFFDK-TRTGELINRLSSDTALLGRSVTENLSDGLRAG 178
Query: 67  ATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQT 126
           A    G  +       L   +LS +P + + A +    + KL    Q + + A  +AE+ 
Sbjct: 179 AQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEER 238
Query: 127 IGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEXXXXXXXXXXXXXXXXSSYSLAIWFG 186
           IG++RTV +F  E   + KY   +    +    E                 +++ A +FG
Sbjct: 239 IGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKE-----------------AFARAGFFG 281
Query: 187 GK------MILEKGYKGGDVIN------------VIFCVMIGSMSLGQASPCISAFAAGQ 228
                   ++L   YKGG ++             +++   +G +S+G  S   S    G 
Sbjct: 282 ATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVG-ISIGGLSSFYSELMKGL 340
Query: 229 AAAYKLFEAIERKPLIDAYDSNGVKLDD--IRGDIELKDIYFSYPSRPGEQIFNGFSLSI 286
            A  +L+E +ER+P +    + GV L++   +G +E K+++F+YP+RP   IF  FSLSI
Sbjct: 341 GAGGRLWELLEREPKLPF--NEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSI 398
Query: 287 PSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEP 346
           PSG+  ALVG SGSGKSTV+SL+ R YDP +G + +DG ++++    W+R KIG VSQEP
Sbjct: 399 PSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 458
Query: 347 VLFTSSIKDNINYGKDGXXXXXX---XXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGG 403
           +LF+ SI +NI YG D                     FI + PQG +T+VGE G  LSGG
Sbjct: 459 ILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGG 518
Query: 404 QKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN 463
           QKQRIAIARA+LK+P+ILLLDEATSALDAE+E +VQEALD++M  RT +++AH LST++N
Sbjct: 519 QKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLSTIKN 578
Query: 464 ADLIAVIHQGKLVE 477
           A+++AV+ QGK+ E
Sbjct: 579 ANMVAVLDQGKITE 592

>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598

Iteration: 1
 Score =  252 bits (643), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 147/467 (31%), Positives = 253/467 (54%), Gaps = 11/467 (2%)
Query: 14  RIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGF 73
           R+R    + L R  +GFFD+  H G+II R+  D   I + +G  + +F   + T  G  
Sbjct: 111 RLRKELFEKLQRVPVGFFDRTPH-GDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAV 169
Query: 74  VIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTV 133
           ++      +L+LV LS +P  VL   ++S+   K     Q        + E+ I  +  +
Sbjct: 170 IMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVI 229
Query: 134 ASFTGEKQAVAKY---NESLTKAYKSGVHEXXXXXXXXXXXXXXXXSSYSLAIWFGGKMI 190
             FT E++ + K+   NESL K    G                     ++L   FGG + 
Sbjct: 230 KLFTREEKEMEKFDRVNESLRKV---GTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLA 286
Query: 191 LEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPLIDAYDSN 250
           L+     G +   I      +  L + S   +      A+A ++FE ++ +   D  D +
Sbjct: 287 LKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKD--DPD 344
Query: 251 GVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIE 310
            V+L ++RG+IE K+++FSY  +  + +    +  I  G   ALVG +GSGK+T+++L+ 
Sbjct: 345 AVELREVRGEIEFKNVWFSYDKK--KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM 402
Query: 311 RFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXX 370
           RFYD   G++L+DG+++++ +   +R  IG+V Q+ +LF++++K+N+ YG  G       
Sbjct: 403 RFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIK 462
Query: 371 XXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 430
                     FI  LP+G +T++ ++G  LS GQ+Q +AI RA L +P+IL+LDEATS +
Sbjct: 463 EAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNV 522
Query: 431 DAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
           D ++E+ +Q A+ K+M  +T++I+AHRL+T++NADLI V+  G++VE
Sbjct: 523 DTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVE 569

>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582

Iteration: 1
 Score =  247 bits (631), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 146/467 (31%), Positives = 250/467 (53%), Gaps = 8/467 (1%)
Query: 14  RIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGF 73
           ++R       +   + FFD+E+ +G ++ R++ D+  +  +    +   ++  A+ IG  
Sbjct: 99  QMRRRLFNHFMHMPVRFFDQES-TGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLL 157
Query: 74  VIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTV 133
            +     W L+LV++   P +      +S    K++   QTA     + AEQ +   + V
Sbjct: 158 TLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVV 217
Query: 134 ASFTGEKQAVAKYNESLTKAYKSGVHEXXXXXXXXXXXXXXXXSSYSLAIWFGGKMILEK 193
            S+ G++    ++++ ++ + +    +                S    A+ F   +   +
Sbjct: 218 LSYGGQEVERKRFDK-VSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIR 276
Query: 194 GYKGGDVINVIFCVMIGSM-SLGQASPCISAFAAGQAAAYKLFEAIERKPLIDAYDSNGV 252
                    V+F  M G M  L   +   S F  G AA   LF  ++   L    D+   
Sbjct: 277 AELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMD---LETERDNGKY 333
Query: 253 KLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERF 312
           + + + G++++KD+ F+Y  +    + +  S SIP G T ALVG+SGSGKST+ +L  RF
Sbjct: 334 EAERVNGEVDVKDVTFTYQGKEKPAL-SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF 392
Query: 313 YDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXX-XX 371
           YD  +G + +DG ++++++L  +R    LVSQ   LF  +I +NI Y  +G         
Sbjct: 393 YDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQ 452
Query: 372 XXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 431
                   +FI+++PQGLDT++GE+GT LSGGQ+QR+AIARA+L+D  +L+LDEATSALD
Sbjct: 453 AARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALD 512
Query: 432 AESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
            ESER +Q ALD++  N+T +++AHRLST+  AD I V+ +G+++E+
Sbjct: 513 TESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIER 559

>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582

Iteration: 1
 Score =  244 bits (624), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 148/453 (32%), Positives = 242/453 (53%), Gaps = 8/453 (1%)
Query: 28  IGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLLTLVM 87
           + FFDK++ +G ++ R++ D+  +  S    +   ++  A+ IG F++     W L++++
Sbjct: 113 VSFFDKQS-TGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIIL 171
Query: 88  LSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYN 147
           +   P + +   V+S     ++   Q         AEQ +   + V  F G++    +++
Sbjct: 172 IVLAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFD 231
Query: 148 ESLTKAYKSGVHEXXXXXXXXXXXXXXXXSSYSLAIWFGGKMILEKGYKGGDVINVIFCV 207
           +   +    G+                   + +  ++      +      G  I V+F  
Sbjct: 232 KVSNRMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAG-TITVVFSS 290
Query: 208 MIGSMSLGQASPCISA-FAAGQAAAYKLFEAIERKPLIDAYDSNGVKLDDIRGDIELKDI 266
           MI  M   ++   ++A F  G AA   LF  ++ +      D     ++   GD+E +++
Sbjct: 291 MIALMRPLKSLTNVNAQFQRGMAACQTLFTILDSE---QEKDEGKRVIERATGDVEFRNV 347
Query: 267 YFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVN 326
            F+YP R    + N  +L IP+G T ALVG+SGSGKST+ SLI RFYD   GE+L+DG +
Sbjct: 348 TFTYPGRDVPALRN-INLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHD 406
Query: 327 LKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGK-DGXXXXXXXXXXXXXXXXKFIDSL 385
           L+E+ L  +R ++ LVSQ   LF  ++ +NI Y + +                  FI+ +
Sbjct: 407 LREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKM 466
Query: 386 PQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKI 445
             GLDT++GE+G  LSGGQ+QRIAIARA+L+D  IL+LDEATSALD ESER +Q ALD++
Sbjct: 467 DNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL 526
Query: 446 MINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
             NRT++++AHRLST+  AD I V+  G +VE+
Sbjct: 527 QKNRTSLVIAHRLSTIEKADEIVVVEDGVIVER 559

>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582

Iteration: 1
 Score =  244 bits (623), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 149/453 (32%), Positives = 241/453 (53%), Gaps = 8/453 (1%)
Query: 28  IGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLLTLVM 87
           + FFDK++ +G ++ R++ D+  +  S    +   ++  A+ IG F++     W L++++
Sbjct: 113 VAFFDKQS-TGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIIL 171
Query: 88  LSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYN 147
           +   P + +   V+S     ++   Q         AEQ +   + V  F G++    +++
Sbjct: 172 VVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFD 231
Query: 148 ESLTKAYKSGVHEXXXXXXXXXXXXXXXXSSYSLAIWFGGKMILEKGYKGGDVINVIFCV 207
           +   K    G+                   + +  ++      +      G  I V+F  
Sbjct: 232 KVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAG-TITVVFSS 290
Query: 208 MIGSMSLGQASPCISA-FAAGQAAAYKLFEAIERKPLIDAYDSNGVKLDDIRGDIELKDI 266
           MI  M   ++   ++A F  G AA   LF  ++ +      D     +D   GD+E +++
Sbjct: 291 MIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSE---QEKDEGKRVIDRATGDLEFRNV 347
Query: 267 YFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVN 326
            F+YP R    + N  +L IP+G T ALVG+SGSGKST+ SLI RFYD   G +L+DG +
Sbjct: 348 TFTYPGREVPALRN-INLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHD 406
Query: 327 LKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGK-DGXXXXXXXXXXXXXXXXKFIDSL 385
           L+E+ L  +R ++ LVSQ   LF  ++ +NI Y + +                  FI+ +
Sbjct: 407 LREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKM 466
Query: 386 PQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKI 445
             GLDT++GE+G  LSGGQ+QRIAIARA+L+D  IL+LDEATSALD ESER +Q ALD++
Sbjct: 467 DNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL 526
Query: 446 MINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
             NRT++++AHRLST+  AD I V+  G +VE+
Sbjct: 527 QKNRTSLVIAHRLSTIEQADEIVVVEDGIIVER 559

>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578

Iteration: 1
 Score =  209 bits (533), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 152/456 (33%), Positives = 216/456 (47%), Gaps = 20/456 (4%)
Query: 31  FDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLLTLVMLSS 90
           F      G++I R+  D    +D I   +        T I    I       LTL  L  
Sbjct: 111 FYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFI 170
Query: 91  IPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESL 150
            P  +LT  V    + KL      A +       + +  I  V SF  E      +++  
Sbjct: 171 FPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKN 230
Query: 151 TKAYKSGVHEXXXXXXXXXXXXXXXXSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIG 210
           T      +                      + I  G  + +      G +        +G
Sbjct: 231 TNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTL-----AAFVG 285
Query: 211 SMSL--GQASPCISAFAA---GQAAAYKLFEAIERKPLIDAYD-SNGVKLDDI---RGDI 261
            + L  G     +++F       A+  ++F+ I+     + YD  NGV    I   +G I
Sbjct: 286 YLELLFGPLRRLVASFTTLTQSFASMDRVFQLID-----EDYDIKNGVGAQPIEIKQGRI 340
Query: 262 ELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 321
           ++  + F Y       I    +LSI  G T A VG SG GKST+I+LI RFYD  +G++L
Sbjct: 341 DIDHVSFQYNDNEAP-ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 399
Query: 322 IDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXXXKF 381
           IDG N+K+F    +R +IGLV Q+ +LF+ ++K+NI  G+                   F
Sbjct: 400 IDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDF 459
Query: 382 IDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEA 441
           I +LPQG DT VGE G +LSGGQKQR++IAR  L +P IL+LDEATSALD ESE ++QEA
Sbjct: 460 IMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEA 519
Query: 442 LDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
           LD +  +RTT+IVAHRLST+ +AD I VI  G +VE
Sbjct: 520 LDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVE 555

>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587

Iteration: 1
 Score =  203 bits (516), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 127/446 (28%), Positives = 230/446 (51%), Gaps = 14/446 (3%)
Query: 36  HSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIV 95
           H+  +I R++ D   +Q+ +   +   ++    F+GG V+A+S    L+ V++  IP IV
Sbjct: 118 HTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIV 177
Query: 96  LTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEK---QAVAKYNESLTK 152
           L    ++     L  + Q +      V  + +  +R V +F  E+   +   K NESL +
Sbjct: 178 LLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRR 237
Query: 153 AYKSGVHEXXXXXXXXXXXXXXXXSSYSLAIWFGGKMILEKGYKGGDVI---NVIFCVMI 209
           +  S                     +    +WFGG ++     + G ++   N +  +M 
Sbjct: 238 SIISAFSLIVFALPLFIFIVNMGMIA---VLWFGGVLVRNNQMEIGSIMAYTNYLMQIMF 294
Query: 210 GSMSLGQASPCISAFAAGQAAAYKLFEAIERKPLIDAYDSNGVKLDDIRGDIELKDIYFS 269
             M +G     ++      A+A ++ E +  KP I+  D N + L ++ G +  +++ F 
Sbjct: 295 SLMMIGN---ILNFIVRASASAKRVLEVLNEKPAIEEAD-NALALPNVEGSVSFENVEFR 350
Query: 270 YPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE 329
           Y     + + +G + S+  G+  A++G++GSGKST+++LI R  DP+ G V +D ++++ 
Sbjct: 351 YFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRT 409
Query: 330 FQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGL 389
            +LK +RG I  V QE VLF+ +IK+N+ +G++                  FI SLP+G 
Sbjct: 410 VKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGY 469
Query: 390 DTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINR 449
           D+ V   G   SGGQKQR++IARA++K P++L+LD+ TS++D  +E+ + + L +     
Sbjct: 470 DSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGC 529
Query: 450 TTVIVAHRLSTVRNADLIAVIHQGKL 475
           TT I+  ++ T   AD I V+H+GK+
Sbjct: 530 TTFIITQKIPTALLADKILVLHEGKV 555

>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260

Iteration: 1
 Score =  202 bits (513), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 99/219 (45%), Positives = 147/219 (67%), Gaps = 1/219 (0%)
Query: 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 319
           +IE  D+ FSYP +   +     +  IPSGTT ALVG +GSGKST+  L+ RFYD + G+
Sbjct: 17  NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE-GD 75
Query: 320 VLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXXX 379
           + I G N+ ++    IR  IG+V Q+ +LF  +IK NI YGK                  
Sbjct: 76  IKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLY 135
Query: 380 KFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQ 439
            FI++LP+  DT+VG  G +LSGG++QRIAIAR +LKDP+I++ DEATS+LD+++E + Q
Sbjct: 136 DFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQ 195
Query: 440 EALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
           +A++ +  NRT +I+AHRLST+ +A+ I ++++GK+VEK
Sbjct: 196 KAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEK 234

>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241

Iteration: 1
 Score =  196 bits (499), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 105/220 (47%), Positives = 140/220 (63%), Gaps = 3/220 (1%)
Query: 260 DIELKDIYFSY-PSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG 318
           DI  ++I F Y P  P   I +  +LSI  G    +VG+SGSGKST+  LI+RFY P+ G
Sbjct: 1   DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 319 EVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXX 378
           +VLIDG +L      W+R ++G+V Q+ VL   SI DNI+    G               
Sbjct: 59  QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 379 XKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVV 438
             FI  L +G +T+VGE G  LSGGQ+QRIAIARA++ +P+IL+ DEATSALD ESE V+
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 439 QEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
              + KI   RT +I+AHRLSTV+NAD I V+ +GK+VE+
Sbjct: 179 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQ 218

>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247

Iteration: 1
 Score =  196 bits (499), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 105/220 (47%), Positives = 140/220 (63%), Gaps = 3/220 (1%)
Query: 260 DIELKDIYFSY-PSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG 318
           DI  ++I F Y P  P   I +  +LSI  G    +VG+SGSGKST+  LI+RFY P+ G
Sbjct: 7   DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 319 EVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXX 378
           +VLIDG +L      W+R ++G+V Q+ VL   SI DNI+    G               
Sbjct: 65  QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 379 XKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVV 438
             FI  L +G +T+VGE G  LSGGQ+QRIAIARA++ +P+IL+ DEATSALD ESE V+
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 439 QEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
              + KI   RT +I+AHRLSTV+NAD I V+ +GK+VE+
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQ 224

>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243

Iteration: 1
 Score =  196 bits (499), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 105/220 (47%), Positives = 140/220 (63%), Gaps = 3/220 (1%)
Query: 260 DIELKDIYFSY-PSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG 318
           DI  ++I F Y P  P   I +  +LSI  G    +VG+SGSGKST+  LI+RFY P+ G
Sbjct: 3   DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 60
Query: 319 EVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXX 378
           +VLIDG +L      W+R ++G+V Q+ VL   SI DNI+    G               
Sbjct: 61  QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 379 XKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVV 438
             FI  L +G +T+VGE G  LSGGQ+QRIAIARA++ +P+IL+ DEATSALD ESE V+
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 439 QEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
              + KI   RT +I+AHRLSTV+NAD I V+ +GK+VE+
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQ 220

>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243

Iteration: 1
 Score =  195 bits (496), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 104/220 (47%), Positives = 140/220 (63%), Gaps = 3/220 (1%)
Query: 260 DIELKDIYFSY-PSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG 318
           DI  ++I F Y P  P   I +  +LSI  G    +VG++GSGKST+  LI+RFY P+ G
Sbjct: 3   DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENG 60
Query: 319 EVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXX 378
           +VLIDG +L      W+R ++G+V Q+ VL   SI DNI+    G               
Sbjct: 61  QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 379 XKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVV 438
             FI  L +G +T+VGE G  LSGGQ+QRIAIARA++ +P+IL+ DEATSALD ESE V+
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 439 QEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
              + KI   RT +I+AHRLSTV+NAD I V+ +GK+VE+
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQ 220

>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247

Iteration: 1
 Score =  195 bits (496), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 104/220 (47%), Positives = 140/220 (63%), Gaps = 3/220 (1%)
Query: 260 DIELKDIYFSY-PSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG 318
           DI  ++I F Y P  P   I +  +LSI  G    +VG+SGSGKST+  LI+RFY P+ G
Sbjct: 7   DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 319 EVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXX 378
           +VLIDG +L      W+R ++G+V Q+ VL   SI DNI+    G               
Sbjct: 65  QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 379 XKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVV 438
             FI  L +G +T+VGE G  LSGGQ+QRIAIARA++ +P+IL+ D+ATSALD ESE V+
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVI 184
Query: 439 QEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
              + KI   RT +I+AHRLSTV+NAD I V+ +GK+VE+
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQ 224

>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306

Iteration: 1
 Score =  193 bits (491), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 103/221 (46%), Positives = 139/221 (62%), Gaps = 2/221 (0%)
Query: 258 RGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA 317
           +G IE ++++FSY    G +     S ++  G T ALVG SG+GKST++ L+ RFYD  +
Sbjct: 51  KGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISS 108
Query: 318 GEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXX 377
           G + IDG ++ +     +R  IG+V Q+ VLF  +I DNI YG+                
Sbjct: 109 GCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAG 168
Query: 378 XXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERV 437
               I + P+G  T VGE G +LSGG+KQR+AIAR ILK P I+LLDEATSALD  +ER 
Sbjct: 169 IHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERA 228
Query: 438 VQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
           +Q +L K+  NRTT++VAHRLSTV NAD I VI  G +VE+
Sbjct: 229 IQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVER 269

>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241

Iteration: 1
 Score =  192 bits (489), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 104/220 (47%), Positives = 139/220 (63%), Gaps = 3/220 (1%)
Query: 260 DIELKDIYFSY-PSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG 318
           DI  ++I F Y P  P   I +  +LSI  G    +VG+SGSGKST+  LI+RFY P+ G
Sbjct: 1   DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 319 EVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXX 378
           +VLIDG +L      W+R ++G+V Q+ VL   SI DNI+    G               
Sbjct: 59  QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 379 XKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVV 438
             FI  L +G +T+VGE G  LSGGQ+QRIAIARA++ +P+IL+ DEATSALD ESE V+
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 439 QEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
              + KI   RT +I+A RLSTV+NAD I V+ +GK+VE+
Sbjct: 179 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQ 218

>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247

Iteration: 1
 Score =  192 bits (489), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 104/220 (47%), Positives = 139/220 (63%), Gaps = 3/220 (1%)
Query: 260 DIELKDIYFSY-PSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG 318
           DI  ++I F Y P  P   I +  +LSI  G    +VG+SGSGKST+  LI+RFY P+ G
Sbjct: 7   DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 319 EVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXX 378
           +VLIDG +L      W+R ++G+V Q+ VL   SI DNI+    G               
Sbjct: 65  QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 379 XKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVV 438
             FI  L +G +T+VGE G  LSGGQ+QRIAIARA++ +P+IL+ DEATSALD ESE V+
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 439 QEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
              + KI   RT +I+A RLSTV+NAD I V+ +GK+VE+
Sbjct: 185 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQ 224

>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243

Iteration: 1
 Score =  182 bits (462), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 92/214 (42%), Positives = 137/214 (64%), Gaps = 3/214 (1%)
Query: 264 KDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID 323
           + + F+Y     EQI    S      +  A  G SG GKST+ SL+ERFY P AGE+ ID
Sbjct: 5   RHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITID 62
Query: 324 GVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXXXK-FI 382
           G  +    L+  R +IG VSQ+  +   +I++N+ YG +G                + F+
Sbjct: 63  GQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFV 122
Query: 383 DSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEAL 442
           +++P  L+T VGE G ++SGGQ+QR+AIARA L++P+IL+LDEAT++LD+ESE +VQ+AL
Sbjct: 123 ENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182
Query: 443 DKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLV 476
           D +M  RTT+++AHRLST+ +AD I  I +G++ 
Sbjct: 183 DSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQIT 216

>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271

Iteration: 1
 Score =  172 bits (436), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 86/226 (38%), Positives = 134/226 (59%), Gaps = 3/226 (1%)
Query: 256 DIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP 315
           +++G ++ +D+ F+YP+ P  Q+  G + ++  G   ALVG +GSGKSTV +L++  Y P
Sbjct: 12  NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 316 QAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG-KDGXXXXXXXXXXX 374
             G+VL+DG  L ++   ++  ++  V QEP+LF  S ++NI YG               
Sbjct: 72  TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 375 XXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 434
                 FI   PQG DT VGE G QLSGGQ+Q +A+ARA+++ PR+L+LD+ATSALDA +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGN 191
Query: 435 ERVVQEAL--DKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
           +  VQ  L       +RT +++ H+LS    A  I  + +G + E+
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQ 237

>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271

Iteration: 1
 Score =  168 bits (425), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 85/226 (37%), Positives = 132/226 (58%), Gaps = 3/226 (1%)
Query: 256 DIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP 315
           +++G ++ +D+ F+YP+ P  Q+  G + ++  G   ALVG +GSGKSTV +L++  Y P
Sbjct: 12  NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 316 QAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG-KDGXXXXXXXXXXX 374
             G+VL+DG  L ++   ++  ++  V QEP+LF  S ++NI YG               
Sbjct: 72  TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 375 XXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 434
                 FI   PQG DT VGE G QLSGGQ+Q +A+ARA+++ PR+L+LD ATSALDA +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 435 ERVVQEAL--DKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
           +  VQ  L       +RT +++  +LS    A  I  + +G + E+
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQ 237

>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260

Iteration: 1
 Score =  163 bits (413), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 133/224 (59%), Gaps = 3/224 (1%)
Query: 257 IRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ 316
           + G ++ +D+ F+YP+RP   +  G + ++  G   ALVG +GSGKSTV +L++  Y P 
Sbjct: 11  LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 70
Query: 317 AGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG-KDGXXXXXXXXXXXX 375
            G++L+DG  L +++ +++  ++  V QEP +F  S+++NI YG                
Sbjct: 71  GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 130
Query: 376 XXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 435
                FI  LPQG DT V E G+QLSGGQ+Q +A+ARA+++ P +L+LD+ATSALDA S+
Sbjct: 131 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 190
Query: 436 RVVQEAL--DKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
             V++ L       +R+ +++   LS V  AD I  +  G + E
Sbjct: 191 LQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIRE 234

>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271

Iteration: 1
 Score =  163 bits (412), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 131/226 (57%), Gaps = 3/226 (1%)
Query: 256 DIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP 315
           +++G ++ +D+ F+YP+ P  Q+  G + ++  G   ALVG +GSGKSTV +L++  Y P
Sbjct: 12  NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 316 QAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG-KDGXXXXXXXXXXX 374
             G+VL+DG  L ++   ++  ++  V QEP+LF  S ++NI YG               
Sbjct: 72  TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 375 XXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 434
                 FI   PQG DT VGE G QL+ GQ+Q +A+ARA+++ PR+L+LD ATSALDA +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 435 ERVVQEAL--DKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
           +  VQ  L       +RT +++  +LS    A  I  + +G + E+
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQ 237

>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343

Iteration: 1
 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/218 (35%), Positives = 110/218 (50%), Gaps = 30/218 (13%)
Query: 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG---VNLKEFQLK 333
           Q  N  SL +P+G    ++G SG+GKST+I  +     P  G VL+DG     L E +L 
Sbjct: 19  QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 78
Query: 334 WIRGKIGLVSQEPVLFTS-SIKDNI-------NYGKDGXXXXXXXXXXXXXXXXKFIDSL 385
             R +IG++ Q   L +S ++  N+       N  KD                 K  DS 
Sbjct: 79  KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH-DSY 137
Query: 386 PQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKI 445
           P           + LSGGQKQR+AIARA+  +P++LL DEATSALD  + R + E L   
Sbjct: 138 P-----------SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKD- 185
Query: 446 MINR----TTVIVAHRLSTV-RNADLIAVIHQGKLVEK 478
            INR    T +++ H +  V R  D +AVI  G+L+E+
Sbjct: 186 -INRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ 222

>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366

Iteration: 1
 Score =  105 bits (262), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/218 (35%), Positives = 110/218 (50%), Gaps = 30/218 (13%)
Query: 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG---VNLKEFQLK 333
           Q  N  SL +P+G    ++G SG+GKST+I  +     P  G VL+DG     L E +L 
Sbjct: 42  QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101
Query: 334 WIRGKIGLVSQEPVLFTS-SIKDNI-------NYGKDGXXXXXXXXXXXXXXXXKFIDSL 385
             R +IG++ Q   L +S ++  N+       N  KD                 K  DS 
Sbjct: 102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH-DSY 160
Query: 386 PQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKI 445
           P           + LSGGQKQR+AIARA+  +P++LL D+ATSALD  + R + E L   
Sbjct: 161 P-----------SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD- 208
Query: 446 MINR----TTVIVAHRLSTV-RNADLIAVIHQGKLVEK 478
            INR    T +++ H +  V R  D +AVI  G+L+E+
Sbjct: 209 -INRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ 245

>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366

Iteration: 1
 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 84/242 (34%), Positives = 119/242 (49%), Gaps = 33/242 (13%)
Query: 255 DDIRGDIELKDI--YFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERF 312
           DD +  I+L +I   F   +R   Q  N  SL +P+G    ++G SG+GKST+I  +   
Sbjct: 19  DDDKHXIKLSNITKVFHQGTR-TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL 77
Query: 313 YDPQAGEVLIDG---VNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNI-------NYGK 361
             P  G VL+DG     L E +L   R +IG + Q   L +S ++  N+       N  K
Sbjct: 78  ERPTEGSVLVDGQELTTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPK 137
Query: 362 DGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRIL 421
           D                 K  DS P           + LSGGQKQR+AIARA+  +P++L
Sbjct: 138 DEVKRRVTELLSLVGLGDKH-DSYP-----------SNLSGGQKQRVAIARALASNPKVL 185
Query: 422 LLDEATSALDAESERVVQEALDKIMINR----TTVIVAHRLSTV-RNADLIAVIHQGKLV 476
           L D+ATSALD  + R + E L    INR    T +++ H    V R  D +AVI  G+L+
Sbjct: 186 LCDQATSALDPATTRSILELLKD--INRRLGLTILLITHEXDVVKRICDCVAVISNGELI 243
Query: 477 EK 478
           E+
Sbjct: 244 EQ 245

>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 109/220 (49%), Gaps = 18/220 (8%)
Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           I +++  F++ +R      NG + SIP G   A+VGQ G GKS+++S +    D   G V
Sbjct: 4   ITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXXXK 380
            I             +G +  V Q+  +   S+++NI +G                    
Sbjct: 63  AI-------------KGSVAYVPQQAWIQNDSLRENILFGCQ-LEEPYYRSVIQACALLP 108
Query: 381 FIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQE 440
            ++ LP G  T +GE G  LSGGQKQR+++ARA+  +  I L D+  SA+DA   + + E
Sbjct: 109 DLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFE 168
Query: 441 AL---DKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
            +     ++ N+T ++V H +S +   D+I V+  GK+ E
Sbjct: 169 NVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISE 208

>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 115/231 (49%), Gaps = 6/231 (2%)
Query: 248 DSNGVKLDDIR---GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKST 304
           +++ VK DDI    G + +KD+   Y +  G  I    S SI  G    L+G++GSGKST
Sbjct: 4   ENSHVKKDDIWPSGGQMTVKDLTAKY-TEGGNAILENISFSISPGQRVGLLGRTGSGKST 62
Query: 305 VISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGX 364
           ++S   R  + + GE+ IDGV+     L+  R   G++ Q+  +F+ + + N++      
Sbjct: 63  LLSAFLRLLNTE-GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNA-AH 120
Query: 365 XXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLD 424
                            I+  P  LD ++ + G  LS G KQ + +AR++L   +ILLLD
Sbjct: 121 SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLD 180
Query: 425 EATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKL 475
           E ++ LD  + ++++  L +   + T ++   R+  +   D   VI + K+
Sbjct: 181 EPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKV 231

>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362

Iteration: 1
 Score = 94.7 bits (234), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 105/203 (51%), Gaps = 11/203 (5%)
Query: 279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK 338
            N  +L I  G   AL+G SGSGKST++  I   Y P +G++  D  ++ E   K     
Sbjct: 19  LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRN 76
Query: 339 IGLVSQEPVLFTS-SIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEHG 397
           +GLV Q   L+   ++  NI +  +                 K +      +D ++  + 
Sbjct: 77  VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLH-----IDKLLNRYP 131
Query: 398 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVA 455
            QLSGGQ+QR+AIARA++K+P +LLLDE  S LDA     V+  L ++   +  TTV V 
Sbjct: 132 WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVT 191
Query: 456 H-RLSTVRNADLIAVIHQGKLVE 477
           H +   +  AD IAVI +G++++
Sbjct: 192 HDQAEALAMADRIAVIREGEILQ 214

>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242

Iteration: 1
 Score = 91.7 bits (226), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 105/210 (50%), Gaps = 15/210 (7%)
Query: 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLK--EFQLKW 334
           ++  G ++ I  G    ++G SGSGKST +  +    D   GE++IDG+NLK  +  L  
Sbjct: 17  EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNK 76
Query: 335 IRGKIGLVSQEPVLFTS-SIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMV 393
           +R ++G+V Q   LF   ++ +NI                      + +D +  GL    
Sbjct: 77  VREEVGMVFQRFNLFPHMTVLNNITLAP--MKVRKWPREKAEAKAMELLDKV--GLKDKA 132
Query: 394 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALD--KIMINR-- 449
             +   LSGGQ QR+AIARA+  +P+I+L DE TSALD E   +V E L   K + N   
Sbjct: 133 HAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPE---MVGEVLSVMKQLANEGM 189
Query: 450 TTVIVAHRLSTVRNA-DLIAVIHQGKLVEK 478
           T V+V H +   R   D +  +  G ++E+
Sbjct: 190 TMVVVTHEMGFAREVGDRVLFMDGGYIIEE 219

>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263

Iteration: 1
 Score = 91.3 bits (225), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 105/210 (50%), Gaps = 15/210 (7%)
Query: 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLK--EFQLKW 334
           ++  G ++ I  G    ++G SGSGKST +  +    D   GE++IDG+NLK  +  L  
Sbjct: 38  EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNK 97
Query: 335 IRGKIGLVSQEPVLFTS-SIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMV 393
           +R ++G+V Q   LF   ++ +NI                      + +D +  GL    
Sbjct: 98  VREEVGMVFQRFNLFPHMTVLNNITLAP--MKVRKWPREKAEAKAMELLDKV--GLKDKA 153
Query: 394 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALD--KIMINR-- 449
             +   LSGGQ QR+AIARA+  +P+I+L DE TSALD E   +V E L   K + N   
Sbjct: 154 HAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPE---MVGEVLSVMKQLANEGM 210
Query: 450 TTVIVAHRLSTVRN-ADLIAVIHQGKLVEK 478
           T V+V H +   R   D +  +  G ++E+
Sbjct: 211 TMVVVTHEMGFAREVGDRVLFMDGGYIIEE 240

>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 104/211 (49%), Gaps = 15/211 (7%)
Query: 264 KDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID 323
            ++ FS+    G  +    +L+I  G   A+ G +GSGK++++ LI    + +A E +I 
Sbjct: 39  NNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLI--LGELEASEGIIK 96
Query: 324 GVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXXXKFID 383
                        G++   SQ   +   +IK+NI +G                   + I 
Sbjct: 97  H-----------SGRVSFCSQFSWIMPGTIKENIIFGV-SYDEYRYKSVVKACQLQQDIT 144
Query: 384 SLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA-ESERVVQEAL 442
              +  +T++GE G  LSGGQ+ RI++ARA+ KD  + LLD     LD    E+V +  +
Sbjct: 145 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 204
Query: 443 DKIMINRTTVIVAHRLSTVRNADLIAVIHQG 473
            K+M N+T ++V  ++  +R AD I ++HQG
Sbjct: 205 CKLMANKTRILVTSKMEHLRKADKILILHQG 235

>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 110/226 (48%), Gaps = 19/226 (8%)
Query: 249 SNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISL 308
           SNG    D +   +  ++ FS+    G  +    +L+I  G   A+ G +GSGK++++ L
Sbjct: 28  SNG----DRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLML 83
Query: 309 IERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXX 368
           I    + +A E +I              G++   SQ   +   +IK+NI +G        
Sbjct: 84  I--LGELEASEGIIKH-----------SGRVSFCSQFSWIMPGTIKENIIFGV-SYDEYR 129
Query: 369 XXXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 428
                      + I    +  +T++GE G  LSGGQ+ RI++ARA+ KD  + LLD    
Sbjct: 130 YKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFG 189
Query: 429 ALDA-ESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQG 473
            LD    E+V +  + K+M N+T ++V  ++  +R AD I ++HQG
Sbjct: 190 YLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQG 235

>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 104/202 (51%), Gaps = 11/202 (5%)
Query: 280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339
           +G S  +  G   AL+G SG GK+T + ++   Y P +GE+  D V + +   K+   ++
Sbjct: 20  DGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY--REV 77
Query: 340 GLVSQEPVLFTS-SIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEHGT 398
           G+V Q   L+   ++ +NI +                    + +      +D ++    T
Sbjct: 78  GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKL-----LIDNLLDRKPT 132
Query: 399 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAH 456
           QLSGGQ+QR+A+ARA++K P++LL DE  S LDA    +++  +  +   +  T+V V H
Sbjct: 133 QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTH 192
Query: 457 -RLSTVRNADLIAVIHQGKLVE 477
            +   +  A  IAV +QGKLV+
Sbjct: 193 DQAEAMTMASRIAVFNQGKLVQ 214

>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348

Iteration: 1
 Score = 89.0 bits (219), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 109/211 (51%), Gaps = 30/211 (14%)
Query: 279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK 338
            +  SL + SG    ++G +G+GK+  + LI  F+ P +G +L+DG ++ +   +  +  
Sbjct: 16  LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHD 73
Query: 339 IGLVSQEPVLFTS-SIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDT------ 391
           I  V Q   LF   ++K N+ +G                   K I    + LDT      
Sbjct: 74  IAFVYQNYSLFPHMNVKKNLEFG----------------MRMKKIKDPKRVLDTARDLKI 117
Query: 392 --MVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-IN 448
             ++  +   LSGG++QR+A+ARA++ +P+ILLLDE  SALD  ++   +E L  +   N
Sbjct: 118 EHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN 177
Query: 449 RTTVI-VAHRLSTVR-NADLIAVIHQGKLVE 477
           + TV+ + H  +  R  AD IAV+  GKL++
Sbjct: 178 KLTVLHITHDQTEARIMADRIAVVMDGKLIQ 208

>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283

Iteration: 1
 Score = 88.6 bits (218), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 109/226 (48%), Gaps = 19/226 (8%)
Query: 249 SNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISL 308
           SNG    D +   +  ++ FS+    G  +    +L+I  G   A+ G +GSGK++++ L
Sbjct: 28  SNG----DRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLML 83
Query: 309 IERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXX 368
           I    + +A E +I              G++   SQ   +   +IK+NI  G        
Sbjct: 84  I--LGELEASEGIIKH-----------SGRVSFCSQFSWIMPGTIKENIIRGV-SYDEYR 129
Query: 369 XXXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 428
                      + I    +  +T++GE G  LSGGQ+ RI++ARA+ KD  + LLD    
Sbjct: 130 YKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFG 189
Query: 429 ALDA-ESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQG 473
            LD    E+V +  + K+M N+T ++V  ++  +R AD I ++HQG
Sbjct: 190 YLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQG 235

>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283

Iteration: 1
 Score = 88.6 bits (218), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 109/226 (48%), Gaps = 19/226 (8%)
Query: 249 SNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISL 308
           SNG    D +   +  ++ FS+    G  +    +L+I  G   A+ G +GSGK++++ L
Sbjct: 28  SNG----DRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLML 83
Query: 309 IERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXX 368
           I    + +A E +I              G++   SQ   +   +IK+NI  G        
Sbjct: 84  I--LGELEASEGIIKH-----------SGRVSFCSQFSWIMPGTIKENIISGV-SYDEYR 129
Query: 369 XXXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 428
                      + I    +  +T++GE G  LSGGQ+ RI++ARA+ KD  + LLD    
Sbjct: 130 YKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFG 189
Query: 429 ALDA-ESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQG 473
            LD    E+V +  + K+M N+T ++V  ++  +R AD I ++HQG
Sbjct: 190 YLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQG 235

>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 108/221 (48%), Gaps = 17/221 (7%)
Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           IE   +   YP   G +   G S  I  G    L+G SGSGK+T++ LI     P  G+V
Sbjct: 15  IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYGKDGXXXXXXXXXXXXXXXX 379
            I G  + +   +  +  +GLV Q   LF   ++ DN+++G                   
Sbjct: 73  WIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130
Query: 380 KFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESER--- 436
           +F+      L++       +LSGGQ+QR+A+ARA+   P++LL DE  +A+D +  R   
Sbjct: 131 RFMR-----LESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELR 185
Query: 437 -VVQEALDKIMINRTTVIVAH-RLSTVRNADLIAVIHQGKL 475
             V++  D++ +  T+V V H +   +  AD + V+H+G +
Sbjct: 186 TFVRQVHDEMGV--TSVFVTHDQEEALEVADRVLVLHEGNV 224

>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 111/229 (48%), Gaps = 26/229 (11%)
Query: 249 SNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISL 308
           SNG    D +   +  ++ FS+    G  +    +L+I  G   A+ G +GSGK++++ L
Sbjct: 28  SNG----DRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLML 83
Query: 309 IERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNI---NYGKDGXX 365
           I    + +A E +I              G++   SQ   +   +IK+NI   +Y +    
Sbjct: 84  I--LGELEASEGIIKH-----------SGRVSFCSQFSWIMPGTIKENIIGVSYDE---- 126
Query: 366 XXXXXXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 425
                         + I    +  +T++GE G  LSGGQ+ RI++ARA+ KD  + LLD 
Sbjct: 127 -YRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDS 185
Query: 426 ATSALDA-ESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQG 473
               LD    E+V +  + K+M N+T ++V  ++  +R AD I ++HQG
Sbjct: 186 PFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQG 234

>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 116/234 (49%), Gaps = 20/234 (8%)
Query: 261 IELKDIYFSYPSRPGE-QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ--- 316
           I ++D+   Y  R G  +  +G SL I   +  A+VG+S SGKST+I  + +   P    
Sbjct: 5   IRVEDLRAVYLVREGTIKAADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRI 64
Query: 317 -AGEVLIDGVNL---KEFQLKWIRGK-IGLVSQEPVLFTSSIKDNINYGKD-----GXXX 366
            +G VL  G +L   +E +L+ IR K I LV Q      +     I + KD     G   
Sbjct: 65  LSGRVLYKGKDLLTMREEELRKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRW 124
Query: 367 XXXXXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 426
                        + +   P+ +   +  +  QLSGG KQR+ IA A+L DP +L+LDE 
Sbjct: 125 SHSELIEKASEKLRMVRLNPEAV---LNSYPLQLSGGMKQRVLIALALLLDPVVLILDEP 181
Query: 427 TSALDAESE-RVVQEALDKIMINRTTVI-VAHRLSTVRN-ADLIAVIHQGKLVE 477
           TSALD  ++  ++Q   +   + + T+I V H ++     AD +AVI+ G LVE
Sbjct: 182 TSALDVLTQAHIIQLLKELKKMLKITLIFVTHDIAVAAELADKVAVIYGGNLVE 235

>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 102/212 (48%), Gaps = 22/212 (10%)
Query: 266 IYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGV 325
           ++FS  S  G  +    +  I  G   A+ G +G+GK++++ +I    +P  G++   G 
Sbjct: 41  LFFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG- 99
Query: 326 NLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNI---NYGKDGXXXXXXXXXXXXXXXXKFI 382
                       +I   SQ   +   +IK+NI   +Y +                  + I
Sbjct: 100 ------------RISFCSQNSWIMPGTIKENIIGVSYDE-----YRYRSVIKACQLEEDI 142
Query: 383 DSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESER-VVQEA 441
               +  + ++GE G  LSGGQ+ RI++ARA+ KD  + LLD     LD  +E+ + +  
Sbjct: 143 SKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESC 202
Query: 442 LDKIMINRTTVIVAHRLSTVRNADLIAVIHQG 473
           + K+M N+T ++V  ++  ++ AD I ++H+G
Sbjct: 203 VCKLMANKTRILVTSKMEHLKKADKILILHEG 234

>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 96/200 (48%), Gaps = 15/200 (7%)
Query: 275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW 334
           G  +    +  I  G   A+ G +G+GK++++ +I    +P  G++   G          
Sbjct: 20  GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---------- 69
Query: 335 IRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVG 394
              +I   SQ   +   +IK+NI +G                   + I    +  + ++G
Sbjct: 70  ---RISFCSQFSWIMPGTIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLG 125
Query: 395 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESER-VVQEALDKIMINRTTVI 453
           E G  LSGGQ+ RI++ARA+ KD  + LLD     LD  +E+ + +  + K+M N+T ++
Sbjct: 126 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 185
Query: 454 VAHRLSTVRNADLIAVIHQG 473
           V  ++  ++ AD I ++H+G
Sbjct: 186 VTSKMEHLKKADKILILHEG 205

>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 96/200 (48%), Gaps = 15/200 (7%)
Query: 275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW 334
           G  +    +  I  G   A+ G +G+GK++++ +I    +P  G++   G          
Sbjct: 32  GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---------- 81
Query: 335 IRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVG 394
              +I   SQ   +   +IK+NI +G                   + I    +  + ++G
Sbjct: 82  ---RISFCSQFSWIMPGTIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLG 137
Query: 395 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESER-VVQEALDKIMINRTTVI 453
           E G  LSGGQ+ RI++ARA+ KD  + LLD     LD  +E+ + +  + K+M N+T ++
Sbjct: 138 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 197
Query: 454 VAHRLSTVRNADLIAVIHQG 473
           V  ++  ++ AD I ++H+G
Sbjct: 198 VTSKMEHLKKADKILILHEG 217

>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 120/231 (51%), Gaps = 25/231 (10%)
Query: 261 IELKDIYFSYPSRPGEQI---FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA 317
           I+LK++  +Y  + GE+I       +L+I  G   +++G SGSGKST++++I     P  
Sbjct: 2   IKLKNVTKTY--KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTE 59
Query: 318 GEVLIDGV---NLKEFQLKWIR-GKIGLVSQE----PVLFT-SSIKDNINYGKDGXXXXX 368
           GEV ID +   +L + +L  IR  KIG V Q+    P+L    +++  + +   G     
Sbjct: 60  GEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE 119
Query: 369 XXXXXXXXXXXKFIDSLPQG-LDTMVGEHG-TQLSGGQKQRIAIARAILKDPRILLLDEA 426
                      + ++ L    L+     H   QLSGGQ+QR+AIARA+  +P I+L D+ 
Sbjct: 120 ERRK-------RALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQP 172
Query: 427 TSALDAESERVVQEALDKIMIN--RTTVIVAHRLSTVRNADLIAVIHQGKL 475
           T ALD+++   + + L K+     +T V+V H ++  R  + I  +  G++
Sbjct: 173 TGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223

>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 119/231 (51%), Gaps = 25/231 (10%)
Query: 261 IELKDIYFSYPSRPGEQI---FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA 317
           I+LK++  +Y  + GE+I       +L+I  G   ++ G SGSGKST +++I     P  
Sbjct: 2   IKLKNVTKTY--KXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTE 59
Query: 318 GEVLIDGV---NLKEFQLKWIR-GKIGLVSQE----PVLFT-SSIKDNINYGKDGXXXXX 368
           GEV ID +   +L + +L  IR  KIG V Q+    P+L    +++  + +   G     
Sbjct: 60  GEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGE 119
Query: 369 XXXXXXXXXXXKFIDSLPQG-LDTMVGEHG-TQLSGGQKQRIAIARAILKDPRILLLDEA 426
                      + ++ L    L+     H   QLSGGQ+QR+AIARA+  +P I+L DE 
Sbjct: 120 ERRK-------RALECLKXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEP 172
Query: 427 TSALDAESERVVQEALDKIMIN--RTTVIVAHRLSTVRNADLIAVIHQGKL 475
           T ALD+++   + + L K+     +T V+V H ++  R  + I  +  G++
Sbjct: 173 TGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223

>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 98/207 (47%), Gaps = 15/207 (7%)
Query: 268 FSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNL 327
           FS  S  G  +    +  I  G   A+ G +G+GK++++ +I    +P  G++   G   
Sbjct: 43  FSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--- 99
Query: 328 KEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQ 387
                     +I   SQ   +   +IK+NI  G                   + I    +
Sbjct: 100 ----------RISFCSQFSWIMPGTIKENIIAGV-SYDEYRYRSVIKACQLEEDISKFAE 148
Query: 388 GLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESER-VVQEALDKIM 446
             + ++GE G  LSGGQ+ RI++ARA+ KD  + LLD     LD  +E+ + +  + K+M
Sbjct: 149 KDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 208
Query: 447 INRTTVIVAHRLSTVRNADLIAVIHQG 473
            N+T ++V  ++  ++ AD I ++H+G
Sbjct: 209 ANKTRILVTSKMEHLKKADKILILHEG 235

>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290

Iteration: 1
 Score = 78.6 bits (192), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 100/210 (47%), Gaps = 22/210 (10%)
Query: 268 FSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNL 327
           FS  S  G  +    +  I  G   A+ G +G+GK++++ +I    +P  G++   G   
Sbjct: 43  FSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--- 99
Query: 328 KEFQLKWIRGKIGLVSQEPVLFTSSIKDNI---NYGKDGXXXXXXXXXXXXXXXXKFIDS 384
                     +I   SQ   +   +IK+NI   +Y +                  + I  
Sbjct: 100 ----------RISFCSQNSWIMPGTIKENIIGVSYDE-----YRYRSVIKACQLEEDISK 144
Query: 385 LPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESER-VVQEALD 443
             +  + ++GE G  LSGGQ+ RI++ARA+ KD  + LLD     LD  +E+ + +  + 
Sbjct: 145 FAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVC 204
Query: 444 KIMINRTTVIVAHRLSTVRNADLIAVIHQG 473
           K+M N+T ++V  ++  ++ AD I ++H+G
Sbjct: 205 KLMANKTRILVTSKMEHLKKADKILILHEG 234

>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235

Iteration: 1
 Score = 78.6 bits (192), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 120/231 (51%), Gaps = 25/231 (10%)
Query: 261 IELKDIYFSYPSRPGEQI---FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA 317
           ++LK++  +Y  + GE+I       +L+I  G   +++G SGSGKST++++I     P  
Sbjct: 2   VKLKNVTKTY--KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTE 59
Query: 318 GEVLIDGV---NLKEFQLKWIR-GKIGLVSQE----PVLFT-SSIKDNINYGKDGXXXXX 368
           GEV ID +   +L + +L  IR  KIG V Q+    P+L    +++  + +   G     
Sbjct: 60  GEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE 119
Query: 369 XXXXXXXXXXXKFIDSLPQG-LDTMVGEHG-TQLSGGQKQRIAIARAILKDPRILLLDEA 426
                      + ++ L    L+     H   QLSGGQ+QR+AIARA+  +P I+L D+ 
Sbjct: 120 ERRK-------RALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQP 172
Query: 427 TSALDAESERVVQEALDKIMIN--RTTVIVAHRLSTVRNADLIAVIHQGKL 475
           T ALD+++   + + L K+     +T V+V H ++  R  + I  +  G++
Sbjct: 173 TWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223

>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240

Iteration: 1
 Score = 78.2 bits (191), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%)
Query: 292 AALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS 351
             L+G +G+GKS  + LI     P  GEV ++G ++    L   R  IG V Q+  LF  
Sbjct: 27  CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGIGFVPQDYALFPH 84
Query: 352 -SIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAI 410
            S+  NI YG                           G+  ++     +LSGG++QR+A+
Sbjct: 85  LSVYRNIAYGLRNVERVERDRRVREMAEK-------LGIAHLLDRKPARLSGGERQRVAL 137
Query: 411 ARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRL-STVRNADLI 467
           ARA++  PR+LLLDE  SA+D +++ V+ E L  +    +   + V H L      AD +
Sbjct: 138 ARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEV 197
Query: 468 AVIHQGKLVEK 478
           AV+  G++VEK
Sbjct: 198 AVMLNGRIVEK 208

>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 97/205 (47%), Gaps = 25/205 (12%)
Query: 283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLV 342
           SL I  G    + G +GSGKST++ ++    +P +G+VL DG   K ++   IR  IG+ 
Sbjct: 29  SLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE---IRRNIGIA 85
Query: 343 SQEPV--LFTSSIKDNINYG-------KDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMV 393
            Q P    F   + D + +        +D                  F D +P       
Sbjct: 86  FQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP------- 138
Query: 394 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDK-IMINRTTV 452
                 LSGG+K+R+AIA  I+ +P IL+LDE    LD E +  +   ++K   + +T +
Sbjct: 139 ----FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVI 194
Query: 453 IVAHRLSTVRN-ADLIAVIHQGKLV 476
           +++H + TV N  D + V+ +GK V
Sbjct: 195 LISHDIETVINHVDRVVVLEKGKKV 219

>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 97/203 (47%), Gaps = 22/203 (10%)
Query: 275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW 334
           G  +    +  I  G   A+ G +G+GK++++ +I    +P  G++   G          
Sbjct: 20  GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---------- 69
Query: 335 IRGKIGLVSQEPVLFTSSIKDNI---NYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDT 391
              +I   SQ   +   +IK+NI   +Y +                  + I    +  + 
Sbjct: 70  ---RISFCSQFSWIMPGTIKENIIGVSYDE-----YRYRSVIKACQLEEDISKFAEKDNI 121
Query: 392 MVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESER-VVQEALDKIMINRT 450
           ++GE G  LSGGQ+ RI++ARA+ KD  + LLD     LD  +E+ + +  + K+M N+T
Sbjct: 122 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 181
Query: 451 TVIVAHRLSTVRNADLIAVIHQG 473
            ++V  ++  ++ AD I ++H+G
Sbjct: 182 RILVTSKMEHLKKADKILILHEG 204

>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 97/205 (47%), Gaps = 25/205 (12%)
Query: 283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLV 342
           SL I  G    + G +GSGKST++ ++    +P +G+VL DG   K ++   IR  IG+ 
Sbjct: 27  SLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE---IRRNIGIA 83
Query: 343 SQEPV--LFTSSIKDNINYG-------KDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMV 393
            Q P    F   + D + +        +D                  F D +P       
Sbjct: 84  FQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP------- 136
Query: 394 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDK-IMINRTTV 452
                 LSGG+K+R+AIA  I+ +P IL+LDE    LD E +  +   ++K   + +T +
Sbjct: 137 ----FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVI 192
Query: 453 IVAHRLSTVRN-ADLIAVIHQGKLV 476
           +++H + TV N  D + V+ +GK V
Sbjct: 193 LISHDIETVINHVDRVVVLEKGKKV 217

>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 101/218 (46%), Gaps = 15/218 (6%)
Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           IEL  + F Y    G+ +    +    +G    +VG++GSGK+T++ ++       AGE+
Sbjct: 12  IELNSVSFRYN---GDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGEI 67
Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPV--LFTSSIKDNINYGKDGXXXXXXXXXXXXXXX 378
            +DG     F L   R  +G V Q P   +  +++++++ +  +                
Sbjct: 68  FLDGSPADPFLL---RKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKV 124
Query: 379 XKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVV 438
            + +     GL  +       LSGGQKQR+AIA  + +D R L LDE  S LD  S+R +
Sbjct: 125 LELV-----GLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREI 179
Query: 439 QEALDKIMIN-RTTVIVAHRLSTVRNADLIAVIHQGKL 475
            + L+ +    +  ++V H L  + + D I  I  G +
Sbjct: 180 FQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTI 217

>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 106/206 (51%), Gaps = 11/206 (5%)
Query: 278 IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNL--KEFQLKWI 335
           + N  SLS+  G    ++G SG GK+T++  +  F  P +GE+ + G  +  K   L   
Sbjct: 19  VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR 78
Query: 336 RGKIGLVSQEPVLFTS-SIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVG 394
             ++G + QE VLF   ++  NI YG                   +       G+  + G
Sbjct: 79  ERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELT-----GISELAG 133
Query: 395 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTV 452
            +  +LSGGQ+QR A+ARA+  DP ++LLDE  SALD +  R ++E +   +    ++ V
Sbjct: 134 RYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAV 193
Query: 453 IVAH-RLSTVRNADLIAVIHQGKLVE 477
            V+H R   ++ AD IAV+ QG++++
Sbjct: 194 FVSHDREEALQYADRIAVMKQGRILQ 219

>pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 95/200 (47%), Gaps = 15/200 (7%)
Query: 275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW 334
           G  +    +  I  G   A+ G +G+GK++++ +I    +P  G++   G          
Sbjct: 50  GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---------- 99
Query: 335 IRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVG 394
              +I   SQ   +   +IK+NI +G                   + I    +  + ++G
Sbjct: 100 ---RISFCSQFSWIMPGTIKENIIFGV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 155
Query: 395 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESER-VVQEALDKIMINRTTVI 453
           E G  LS GQ+ +I++ARA+ KD  + LLD     LD  +E+ + +  + K+M N+T ++
Sbjct: 156 EGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 215
Query: 454 VAHRLSTVRNADLIAVIHQG 473
           V  ++  ++ AD I ++H+G
Sbjct: 216 VTSKMEHLKKADKILILHEG 235

>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 102/202 (50%), Gaps = 11/202 (5%)
Query: 280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339
           N  +L+I  G    L+G SG GK+T + +I    +P  G +     ++     K     I
Sbjct: 29  NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 86
Query: 340 GLVSQEPVLFTS-SIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEHGT 398
            +V Q   ++   ++ +NI +                    ++   L Q ++ ++  +  
Sbjct: 87  SMVFQSYAVWPHMTVYENIAF----PLKIKKFPKDEIDKRVRWAAELLQ-IEELLNRYPA 141
Query: 399 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAH 456
           QLSGGQ+QR+A+ARAI+ +P +LL+DE  S LDA+    ++  + K+   +  TT+ V H
Sbjct: 142 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 201
Query: 457 -RLSTVRNADLIAVIHQGKLVE 477
            ++  +   D IAV+++G+L++
Sbjct: 202 DQVEAMTMGDRIAVMNRGQLLQ 223

>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 102/202 (50%), Gaps = 11/202 (5%)
Query: 280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339
           N  +L+I  G    L+G SG GK+T + +I    +P  G +     ++     K     I
Sbjct: 28  NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85
Query: 340 GLVSQEPVLFTS-SIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEHGT 398
            +V Q   ++   ++ +NI +                    ++   L Q ++ ++  +  
Sbjct: 86  SMVFQSYAVWPHMTVYENIAF----PLKIKKFPKDEIDKRVRWAAELLQ-IEELLNRYPA 140
Query: 399 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAH 456
           QLSGGQ+QR+A+ARAI+ +P +LL+DE  S LDA+    ++  + K+   +  TT+ V H
Sbjct: 141 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 200
Query: 457 -RLSTVRNADLIAVIHQGKLVE 477
            ++  +   D IAV+++G+L++
Sbjct: 201 DQVEAMTMGDRIAVMNRGQLLQ 222

>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 96/203 (47%), Gaps = 22/203 (10%)
Query: 275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW 334
           G  +    +  I  G   A+ G +G+GK++++ +I    +P  G++   G          
Sbjct: 50  GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---------- 99
Query: 335 IRGKIGLVSQEPVLFTSSIKDNI---NYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDT 391
              +I   SQ   +   +IK+NI   +Y +                  + I    +  + 
Sbjct: 100 ---RISFCSQFSWIMPGTIKENIIGVSYDE-----YRYRSVIKACQLEEDISKFAEKDNI 151
Query: 392 MVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESER-VVQEALDKIMINRT 450
           ++GE G  LS GQ+ +I++ARA+ KD  + LLD     LD  +E+ + +  + K+M N+T
Sbjct: 152 VLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 211
Query: 451 TVIVAHRLSTVRNADLIAVIHQG 473
            ++V  ++  ++ AD I ++H+G
Sbjct: 212 RILVTSKMEHLKKADKILILHEG 234

>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 113/224 (50%), Gaps = 27/224 (12%)
Query: 275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLK------ 328
           G ++  G SL   +G   +++G SGSGKST +  I     P  G ++++G N+       
Sbjct: 18  GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKD 77
Query: 329 -------EFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYGKDGXXXXXXXXXXXXXXXXK 380
                  + QL+ +R ++ +V Q   L++  ++ +N+                      K
Sbjct: 78  GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAP--IQVLGLSKHDARERALK 135
Query: 381 FIDSLPQGLDTMV-GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA----ESE 435
           ++  +  G+D    G++   LSGGQ+QR++IARA+  +P +LL DE TSALD     E  
Sbjct: 136 YLAKV--GIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVL 193
Query: 436 RVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVEK 478
           R++Q+  ++    +T V+V H +   R+ +  +  +HQGK+ E+
Sbjct: 194 RIMQQLAEE---GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 234

>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 107/209 (51%), Gaps = 18/209 (8%)
Query: 279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID----GVNLKEFQLKW 334
            +  +++I +G    ++G SG+GK+T + +I     P  GE+  D      N K      
Sbjct: 21  LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 335 IRGKIGLVSQEPVLFTS-SIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMV 393
            R KIG+V Q   L+ + +  +NI +                    K +D     +  ++
Sbjct: 81  DR-KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILD-----IHHVL 134
Query: 394 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA---ESER-VVQEALDKIMINR 449
                +LSGGQ+QR+A+ARA++KDP +LLLDE  S LDA   +S R +V+E   ++ +  
Sbjct: 135 NHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV-- 192
Query: 450 TTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477
           T ++V+H  + +   AD + V+ +GKLV+
Sbjct: 193 TLLVVSHDPADIFAIADRVGVLVKGKLVQ 221

>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 95/209 (45%), Gaps = 17/209 (8%)
Query: 278 IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI-R 336
           + N  SL I SG   A++G +G+GKST++ L+  +  P  GE  + G NL  +Q K + R
Sbjct: 26  LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR 85
Query: 337 GKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEH 396
            +  +     + F  S+ + I  G+                      +L Q  D  V   
Sbjct: 86  TRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQR-DYRV--- 141
Query: 397 GTQLSGGQKQRIAIARAILK------DPRILLLDEATSALDAESERVVQEALDKIMINRT 450
              LSGG++QR+ +AR + +       PR L LDE TSALD   ++     L ++     
Sbjct: 142 ---LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEP 198
Query: 451 TVI--VAHRLS-TVRNADLIAVIHQGKLV 476
             +  V H L+     AD I ++ QGKLV
Sbjct: 199 LAVCCVLHDLNLAALYADRIMLLAQGKLV 227

>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 109/220 (49%), Gaps = 20/220 (9%)
Query: 268 FSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG--V 325
            +Y    G     G +++I  G   A++G +G GKST+         P +G +L D   +
Sbjct: 13  LNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPI 72
Query: 326 NLKEFQLKWIRGKIGLVSQEP--VLFTSSIKDNINYGKDGXXXXXXXXXXXXXXXXKFID 383
           +     +  +R  IG+V Q+P   LF++S+  ++++G                   K +D
Sbjct: 73  DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFG-------AVNMKLPEDEIRKRVD 125
Query: 384 SLPQ--GLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD----AESERV 437
           +  +  G++ +  +    LS GQK+R+AIA  ++ +P++L+LDE T+ LD    +E  ++
Sbjct: 126 NALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKL 185
Query: 438 VQEALDKIMINRTTVIVAHRLSTVR-NADLIAVIHQGKLV 476
           + E   ++ I  T +I  H +  V    D + V+ +G+++
Sbjct: 186 LVEMQKELGI--TIIIATHDIDIVPLYCDNVFVMKEGRVI 223

>pdb|1G29|1 Chain 1, Malk Length = 372

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 98/201 (48%), Gaps = 13/201 (6%)
Query: 283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI-DGVNLKEFQLKWIRGK--- 338
           SL +  G    L+G SG GK+T + +I    +P  G++ I D +     +  ++  K   
Sbjct: 23  SLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82
Query: 339 IGLVSQEPVLFTS-SIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEHG 397
           I +V Q   L+   ++ DNI +                    + +     GL  ++    
Sbjct: 83  IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELL-----GLTELLNRKP 137
Query: 398 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKI--MINRTTVIVA 455
            +LSGGQ+QR+A+ RAI++ P++ L+DE  S LDA+    ++  L K+   +  TT+ V 
Sbjct: 138 RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVT 197
Query: 456 H-RLSTVRNADLIAVIHQGKL 475
           H ++  +   D IAV+++G L
Sbjct: 198 HDQVEAMTMGDRIAVMNRGVL 218

>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 106/209 (50%), Gaps = 18/209 (8%)
Query: 279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID----GVNLKEFQLKW 334
            +  +++I +G    ++G SG+GK+T + +I     P  GE+  D      N K      
Sbjct: 21  LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 335 IRGKIGLVSQEPVLFTS-SIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMV 393
            R KIG+V Q   L+ + +  +NI +                    K +D     +  ++
Sbjct: 81  DR-KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILD-----IHHVL 134
Query: 394 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA---ESER-VVQEALDKIMINR 449
                +LSG Q+QR+A+ARA++KDP +LLLDE  S LDA   +S R +V+E   ++ +  
Sbjct: 135 NHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV-- 192
Query: 450 TTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477
           T ++V+H  + +   AD + V+ +GKLV+
Sbjct: 193 TLLVVSHDPADIFAIADRVGVLVKGKLVQ 221

>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 90/194 (46%), Gaps = 23/194 (11%)
Query: 275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG-----VNLKE 329
           G +I  G SLS+  G   +++G SGSGKST++ ++     P  G+V ++G      N KE
Sbjct: 16  GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKE 75
Query: 330 FQLKWIRGKIGLVSQ------EPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXXXKFID 383
             L   R K+G V Q      E     + I   +  GK                    + 
Sbjct: 76  LSLLRNR-KLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEY--------LLS 126
Query: 384 SLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALD 443
            L  GL   +     +LSGG++QR+AIARA+  +P +L  DE T  LD+ + + V +   
Sbjct: 127 EL--GLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFL 184
Query: 444 KIMINRTT-VIVAH 456
           KI    T+ V+V H
Sbjct: 185 KINEGGTSIVMVTH 198

>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 92/203 (45%), Gaps = 15/203 (7%)
Query: 282 FSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI-----R 336
            SL I  G    L+G SG GK+T +  I    +P  G++ I+  NL     K +      
Sbjct: 25  LSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIED-NLVADPEKGVFVPPKE 83
Query: 337 GKIGLVSQEPVLFTS-SIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGE 395
             +  V Q   L+   ++ DNI +                    + +     GL  ++  
Sbjct: 84  RDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXL-----GLTELLNR 138
Query: 396 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKI--MINRTTVI 453
              +LSGGQ+QR+A+ RAI++ P++ L DE  S LDA+     +  L K+   +  TT+ 
Sbjct: 139 KPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIY 198
Query: 454 VAH-RLSTVRNADLIAVIHQGKL 475
           V H ++      D IAV ++G+L
Sbjct: 199 VTHDQVEAXTXGDRIAVXNKGEL 221

>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 97/205 (47%), Gaps = 11/205 (5%)
Query: 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIR 336
           +I  G S  I  G    L+G +G+GK+T + +I     P +G V + G N+ E +   +R
Sbjct: 29  EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVR 87
Query: 337 GKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQ--GLDTMVG 394
             I  + +E   + +     I Y +                  + ++   +  GL   + 
Sbjct: 88  KLISYLPEEAGAYRNM--QGIEYLR----FVAGFYASSSSEIEEMVERATEIAGLGEKIK 141
Query: 395 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIV 454
           +  +  S G  +++ IARA++ +PR+ +LDE TS LD  + R V++ L +      T++V
Sbjct: 142 DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILV 201
Query: 455 -AHRLSTVRN-ADLIAVIHQGKLVE 477
            +H +  V    D IA+IH G +VE
Sbjct: 202 SSHNMLEVEFLCDRIALIHNGTIVE 226

>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 84/190 (44%), Gaps = 23/190 (12%)
Query: 278 IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRG 337
           +F   +  +  G   A++GQ+G GKST++ L+   + P  G++              +  
Sbjct: 20  LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI-------------EVYQ 66
Query: 338 KIGLVSQ---EPVLFTSSIKDNINYGKDGXXXXXXXXXXX-XXXXXKFIDSLPQGLDTMV 393
            IG V Q    P  F  S+ D +  G+                   + +D L   L  + 
Sbjct: 67  SIGFVPQFFSSP--FAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYL--NLTHLA 122
Query: 394 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTT 451
               T LSGGQ+Q I IARAI  + +++LLDE TSALD  ++ +V   L  +    N T 
Sbjct: 123 KREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTV 182
Query: 452 VIVAHRLSTV 461
           V   H+ + V
Sbjct: 183 VFTTHQPNQV 192

>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 93/206 (45%), Gaps = 23/206 (11%)
Query: 282 FSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGL 341
            +L I  G     VG SG GKST++ +I       +G++ I    + +      RG +G+
Sbjct: 22  INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE-RG-VGM 79
Query: 342 VSQEPVLFTS-SIKDNINYG------KDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVG 394
           V Q   L+   S+ +N+++G      K                    +D  P+ L     
Sbjct: 80  VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKAL----- 134
Query: 395 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTV 452
                 SGGQ+QR+AI R ++ +P + LLDE  S LDA     ++  + ++   + RT +
Sbjct: 135 ------SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMI 188
Query: 453 IVAH-RLSTVRNADLIAVIHQGKLVE 477
            V H ++  +  AD I V+  G++ +
Sbjct: 189 YVTHDQVEAMTLADKIVVLDAGRVAQ 214

>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 93/206 (45%), Gaps = 23/206 (11%)
Query: 282 FSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGL 341
            +L I  G     VG SG GKST++ +I       +G++ I    + +      RG +G+
Sbjct: 22  INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE-RG-VGM 79
Query: 342 VSQEPVLFTS-SIKDNINYG------KDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVG 394
           V Q   L+   S+ +N+++G      K                    +D  P+ L     
Sbjct: 80  VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKAL----- 134
Query: 395 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTV 452
                 SGGQ+QR+AI R ++ +P + LLDE  S LDA     ++  + ++   + RT +
Sbjct: 135 ------SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMI 188
Query: 453 IVAH-RLSTVRNADLIAVIHQGKLVE 477
            V H ++  +  AD I V+  G++ +
Sbjct: 189 YVTHDQVEAMTLADKIVVLDAGRVAQ 214

>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 103/226 (45%), Gaps = 16/226 (7%)
Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLI--ERFYDPQAG 318
           +E++D++ S     GE I  G +L +P G   AL+G +G+GKST+  ++  +  Y  + G
Sbjct: 4   LEIRDLWASID---GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERG 60
Query: 319 EVLIDGVNLKEFQL-KWIRGKIGLVSQEPVLFTSSIKDNI----NYGKDGXXXXXXXXXX 373
           E+L+DG N+ E    +  R  + L  Q PV        N        K G          
Sbjct: 61  EILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWT 120
Query: 374 XXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 433
                 + +D     L   + E     SGG+K+R  I + ++ +P   +LDE  S LD +
Sbjct: 121 KVKKALELLDWDESYLSRYLNEG---FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDID 177
Query: 434 SERVVQEALDKIM-INRTTVIVAH--RLSTVRNADLIAVIHQGKLV 476
           + +VV   ++ +   N   +++ H  R+      D + V+  G++V
Sbjct: 178 ALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVV 223

>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 93/206 (45%), Gaps = 23/206 (11%)
Query: 282 FSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGL 341
            +L I  G     VG SG GKST++ +I       +G++ I    + +      RG +G+
Sbjct: 22  INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE-RG-VGM 79
Query: 342 VSQEPVLFTS-SIKDNINYG------KDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVG 394
           V Q   L+   S+ +N+++G      K                    +D  P+ L     
Sbjct: 80  VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKAL----- 134
Query: 395 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTV 452
                 SGGQ+QR+AI R ++ +P + LLD+  S LDA     ++  + ++   + RT +
Sbjct: 135 ------SGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMI 188
Query: 453 IVAH-RLSTVRNADLIAVIHQGKLVE 477
            V H ++  +  AD I V+  G++ +
Sbjct: 189 YVTHDQVEAMTLADKIVVLDAGRVAQ 214

>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 92/202 (45%), Gaps = 9/202 (4%)
Query: 279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI-RG 337
             G  L +P G    L+G +G+GK+T +S I      Q G+++ +G ++       I R 
Sbjct: 22  IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 338 KIGLVSQEPVLFTS-SIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEH 396
            I LV +   +F   ++ +N+  G                   ++I SL   L   + + 
Sbjct: 82  GIALVPEGRRIFPELTVYENLXXG-----AYNRKDKEGIKRDLEWIFSLFPRLKERLKQL 136
Query: 397 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAH 456
           G  LSGG++Q +AI RA+   P++L  DE +  L       V E + KI    TT+++  
Sbjct: 137 GGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILLVE 196
Query: 457 R--LSTVRNADLIAVIHQGKLV 476
           +  L  ++ A    V+  G++V
Sbjct: 197 QNALGALKVAHYGYVLETGQIV 218

>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 23/174 (13%)
Query: 285 SIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQ 344
            I  G    +VG +G GK+T + ++    +P  G+V  D      ++ ++I+ +      
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT--VAYKPQYIKAEYEGTVY 435
Query: 345 EPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQ 404
           E +    S K N N+ K                        P G+  +   +   LSGG+
Sbjct: 436 ELLSKIDSSKLNSNFYKTELLK-------------------PLGIIDLYDRNVEDLSGGE 476
Query: 405 KQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAH 456
            QR+AIA  +L+D  I LLDE ++ LD E    V  A+  +M    +T ++V H
Sbjct: 477 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 530

>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 23/174 (13%)
Query: 285 SIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQ 344
            I  G    +VG +G GK+T + ++    +P  G+V  D      ++ ++I+ +      
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT--VAYKPQYIKAEYEGTVY 421
Query: 345 EPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQ 404
           E +    S K N N+ K                        P G+  +   +   LSGG+
Sbjct: 422 ELLSKIDSSKLNSNFYKTELLK-------------------PLGIIDLYDRNVEDLSGGE 462
Query: 405 KQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAH 456
            QR+AIA  +L+D  I LLDE ++ LD E    V  A+  +M    +T ++V H
Sbjct: 463 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 516

>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 102/228 (44%), Gaps = 14/228 (6%)
Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLI--ERFYDPQAG 318
           + +KD++ S   +    I  G SL +  G   A++G +GSGKST+ + +     Y+   G
Sbjct: 21  LSIKDLHVSVEDKA---ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGG 77
Query: 319 EVLIDGVNLKEFQLKWIRGK-IGLVSQEPVLFTSS-----IKDNINYGKDGXXXXXXXXX 372
            V   G +L     +   G+ I +  Q PV          ++  +N  +           
Sbjct: 78  TVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRF 137
Query: 373 XXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 432
                  + I  L    D +        SGG+K+R  I +  + +P + +LDE+ S LD 
Sbjct: 138 DFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDI 197
Query: 433 ESERVVQEALDKIMI-NRTTVIVAH--RLSTVRNADLIAVIHQGKLVE 477
           ++ +VV + ++ +    R+ +IV H  R+      D + V++QG++V+
Sbjct: 198 DALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK 245

>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 102/228 (44%), Gaps = 14/228 (6%)
Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLI--ERFYDPQAG 318
           + +KD++ S   +    I  G SL +  G   A++G +GSGKST+ + +     Y+   G
Sbjct: 2   LSIKDLHVSVEDKA---ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGG 58
Query: 319 EVLIDGVNLKEFQLKWIRGK-IGLVSQEPVLFTSS-----IKDNINYGKDGXXXXXXXXX 372
            V   G +L     +   G+ I +  Q PV          ++  +N  +           
Sbjct: 59  TVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRF 118
Query: 373 XXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 432
                  + I  L    D +        SGG+K+R  I +  + +P + +LDE+ S LD 
Sbjct: 119 DFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDI 178
Query: 433 ESERVVQEALDKIMI-NRTTVIVAH--RLSTVRNADLIAVIHQGKLVE 477
           ++ +VV + ++ +    R+ +IV H  R+      D + V++QG++V+
Sbjct: 179 DALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK 226

>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 93/212 (43%), Gaps = 16/212 (7%)
Query: 279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNL--KEFQLKWIR 336
            +G S+S+  G    ++G +GSGKST+I++I  F     G V  +  ++  KE    +  
Sbjct: 23  LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 337 GKIGLVSQEPVLFTSSIKDN-----INYGKDGXXXX-----XXXXXXXXXXXXKFIDSLP 386
           G +        L   ++ +N     IN G+                       K ++ L 
Sbjct: 83  GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL- 141
Query: 387 QGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-DAESERVVQEALDKI 445
             L  +      +LSGGQ + + I RA++ +P+++++DE  + +    +  +    L+  
Sbjct: 142 -KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200
Query: 446 MINRTTVIVAHRLSTVRNA-DLIAVIHQGKLV 476
               T +I+ HRL  V N  D + V+  G+++
Sbjct: 201 AKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 232

>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 92/210 (43%), Gaps = 12/210 (5%)
Query: 279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNL--KEFQLKWIR 336
            +G S+S+  G    ++G +GSGKST+I++I  F     G V  +  ++  KE    +  
Sbjct: 23  LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 337 GKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQG-------- 388
           G +        L   ++ +N+  G+                  K  + + +         
Sbjct: 83  GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 389 LDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-DAESERVVQEALDKIMI 447
           L  +      +LSGGQ + + I RA++ +P+++++DE  + +    +  +    L+    
Sbjct: 143 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 202
Query: 448 NRTTVIVAHRLSTVRNA-DLIAVIHQGKLV 476
             T +I+ HRL  V N  D + V+  G+++
Sbjct: 203 GITFLIIEHRLDIVLNYIDHLYVMFNGQII 232

>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 97/207 (46%), Gaps = 36/207 (17%)
Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           +E++D+   Y  +P   +    +++I  G      G +G GK+T++  I  +  P  GE+
Sbjct: 11  LEIRDLSVGY-DKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNIN-----YGKDGXXXXXXXXXXX 374
           + +GV + +     ++GKI  + +E ++    S++D +      YG              
Sbjct: 67  IYNGVPITK-----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYG-------------V 108
Query: 375 XXXXXKFIDSLPQ----GLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 430
                + +D+L       L   +GE    LS G  +R+ +A  +L +  I +LD+   A+
Sbjct: 109 KVNKNEIMDALESVEVLDLKKKLGE----LSQGTIRRVQLASTLLVNAEIYVLDDPVVAI 164
Query: 431 DAESERVVQEALDKIMINRTTVIVAHR 457
           D +S+  V +++ +I+  +  VI++ R
Sbjct: 165 DEDSKHKVLKSILEILKEKGIVIISSR 191

>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 93/212 (43%), Gaps = 16/212 (7%)
Query: 279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNL--KEFQLKWIR 336
            +G S+S+  G    ++G +GSGKST+I++I  F     G V  +  ++  KE    +  
Sbjct: 23  LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 337 GKIGLVSQEPVLFTSSIKDN-----INYGKDGXXXX-----XXXXXXXXXXXXKFIDSLP 386
           G +        L   ++ +N     IN G+                       K ++ L 
Sbjct: 83  GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL- 141
Query: 387 QGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-DAESERVVQEALDKI 445
             L  +      +LSGGQ + + I RA++ +P+++++D+  + +    +  +    L+  
Sbjct: 142 -KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELK 200
Query: 446 MINRTTVIVAHRLSTVRNA-DLIAVIHQGKLV 476
               T +I+ HRL  V N  D + V+  G+++
Sbjct: 201 AKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 232

>pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 386 PQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKI 445
           P G+  +      +LSGG+ QR+AIA  +L+D  I LLDE ++ LD E    V  A+  +
Sbjct: 388 PLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 447
Query: 446 M--INRTTVIVAH 456
                +T ++V H
Sbjct: 448 XEKNEKTALVVEH 460

>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 36/199 (18%)
Query: 268 FSYPSRPGEQIFNGFSLSIPSGTTA-----ALVGQSGSGKSTVISLIERFYDPQAGEVLI 322
           FSYPS    Q    F L++  G  +      ++G++G+GK+T+I L+     P  G+  I
Sbjct: 354 FSYPSLKKTQ--GDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD-I 410
Query: 323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKD---NINYGKDGXXXXXXXXXXXXXXXX 379
             +N+     K      G V Q   LF   I+    N  +  D                 
Sbjct: 411 PKLNVSMKPQKIAPKFPGTVRQ---LFFKKIRGQFLNPQFQTDVVK-------------- 453
Query: 380 KFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQ 439
                 P  +D ++ +    LSGG+ QR+AI  A+     I L+DE ++ LD+E   +  
Sbjct: 454 ------PLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICS 507
Query: 440 EALDKIMIN--RTTVIVAH 456
           + + + +++  +T  IV H
Sbjct: 508 KVIRRFILHNKKTAFIVEH 526

>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 393 VGEHGTQLSGGQKQRIAIARAILKDP---RILLLDEATSALDAESERVVQEALDKIMINR 449
           +G+  T LSGG+ QRI +A  + K      + +LDE T  L  E  R + E L +++   
Sbjct: 799 LGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRG 858
Query: 450 TTVIV-AHRLSTVRNADLI 467
            TVIV  H L  ++NAD I
Sbjct: 859 NTVIVIEHNLDVIKNADHI 877

>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 30/42 (71%)
Query: 390 DTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 431
           D M+    + LSGG K ++A+ARA+L++  ILLLDE T+ LD
Sbjct: 539 DEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLD 580

>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 94/221 (42%), Gaps = 51/221 (23%)
Query: 279 FNGFSLSIPSGTT-AALVGQSGSGKSTVI-----SLIERFYDPQAGEVLIDGVNLKEFQL 332
           F  F L  P   T   ++G++G GK+TV+      +I  F DP + +V  D V      L
Sbjct: 14  FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNS-KVGKDEV------L 66
Query: 333 KWIRGKIGLVSQEPVLFTSSIK--DNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLD 390
           K  RGK  + +    L+++ +K    I Y                    KF+      + 
Sbjct: 67  KRFRGK-EIYNYFKELYSNELKIVHKIQY---------------VEYASKFLKGTVNEIL 110
Query: 391 TMVGEHGTQ-------------------LSGGQKQRIAIARAILKDPRILLLDEATSALD 431
           T + E G +                   LSGG  QR+ +A ++L++  + + D+ +S LD
Sbjct: 111 TKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLD 170
Query: 432 AESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIH 471
                 + +A+ +++ N+  ++V H L  +    DLI +I+
Sbjct: 171 VRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIY 211

>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 390 DTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 431
           D  +    + LSGG K ++A+ARA+L++  ILLLDE T+ LD
Sbjct: 539 DEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLD 580

>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 390 DTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 431
           D  +    + LSGG K ++A+ARA+L++  ILLLDE T+ LD
Sbjct: 533 DEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLD 574

>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 74/170 (43%), Gaps = 18/170 (10%)
Query: 273 RPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE--F 330
           + G+ I    S  I  G    L G +G+GK+T+++++  +    +G V + G    +  +
Sbjct: 31  KQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGY 90
Query: 331 QLKWIRGKIGLVSQEPVLFTSSIKDNINYGK---DGXXXXXXXXXXXXXXXXKFIDSLPQ 387
             + +R  IG VS        S+ +    G+   D                   I +   
Sbjct: 91  SAETVRQHIGFVSH-------SLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAH 143
Query: 388 GLDTMVG------EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 431
            L  +VG      ++   LS G+KQR+ IARA+   P++L+LDE  + LD
Sbjct: 144 QLLKLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193

>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans Length = 842

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 393 VGEHGTQLSGGQKQRIAIARAILKDPR---ILLLDEATSALD-AESERVVQEALDKIMIN 448
           +G+  T+LSGG+ QRI +A  + +  R   + +LDE T+ L  A+ ER+ ++ +  +   
Sbjct: 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAG 783
Query: 449 RTTVIVAHRLSTVRNADLIAVIHQG 473
            T + V H++  V  +D +  I  G
Sbjct: 784 NTVIAVEHKMQVVAASDWVLDIGPG 808

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	478
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	0.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	0.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	0.0
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	1e-164
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	1e-160
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	1e-154
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	1e-151
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	1e-143
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	1e-133
2ghi_A	260	Transport protein; multidrug resistance protein, M	1e-126
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	1e-125
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	1e-115
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	1e-108
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	4e-59
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	1e-41
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	1e-40
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	2e-39
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	2e-38
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	3e-38
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	4e-38
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	1e-36
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	5e-36
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	7e-36
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	1e-28
1sgw_A	214	Putative ABC transporter; structural genomics, P p	5e-34
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	4e-32
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	8e-30
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	7e-32
1b0u_A	262	Histidine permease; ABC transporter, transport pro	2e-31
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	3e-31
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	5e-29
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	4e-31
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	8e-31
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	8e-31
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	4e-30
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	8e-30
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	9e-30
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	2e-29
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	3e-29
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	2e-28
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	2e-28
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	2e-27
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	1e-24
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	2e-20
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	8e-19
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	1e-17
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	2e-17
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	6e-17
1g6h_A	257	High-affinity branched-chain amino acid transport	1e-16
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	3e-16
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	4e-10
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	3e-06
1ji0_A	240	ABC transporter; ATP binding protein, structural g	2e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-11
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	7e-10
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	1e-09
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	9e-08
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	1e-06
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	4e-05

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score =  748 bits (1934), Expect = 0.0
 Identities = 226/478 (47%), Positives = 329/478 (68%), Gaps = 1/478 (0%)

Query: 1   VACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVG 60
           V+ W +   RQ  +IR  +   ++ Q+IG+FD     GE+  R++ D   I + IG+K+G
Sbjct: 129 VSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHD-VGELNTRLTDDVSKINEGIGDKIG 187

Query: 61  KFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAA 120
            F Q +ATF GGF+I  ++GW LTLV+L+  P + L+AG+ + +++    +   AY+ A 
Sbjct: 188 MFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAG 247

Query: 121 AVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYS 180
           AVAE+ + +IRTV +F G+K+ + +YN +L +A + G+ + + A +  GA   + ++SY+
Sbjct: 248 AVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYA 307

Query: 181 LAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIER 240
           LA W+G  +++ K Y  G V+ V F V+IG+ S+GQASP I AFA  + AAY++F+ I+ 
Sbjct: 308 LAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDN 367

Query: 241 KPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGS 300
           KP ID++  +G K D+I+G++E K+I+FSYPSR   QI  G +L + SG T ALVG SG 
Sbjct: 368 KPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGC 427

Query: 301 GKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG 360
           GKST + L++R YDP  G V IDG +++   ++++R  IG+VSQEPVLF ++I +NI YG
Sbjct: 428 GKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYG 487

Query: 361 KDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420
           ++  ++ EI  A + ANA  FI  LP   DT+VGE G QLSGGQKQRIAIARA++++P+I
Sbjct: 488 REDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKI 547

Query: 421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
           LLLDEATSALD ESE VVQ ALDK    RTT+++AHRLSTVRNAD+IA    G +VE+
Sbjct: 548 LLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQ 605

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score =  628 bits (1621), Expect = 0.0
 Identities = 192/479 (40%), Positives = 294/479 (61%), Gaps = 3/479 (0%)

Query: 3    CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHS-GEIIERMSGDTVLIQDSIGEKVGK 61
             +   GE    R+R +  K++LRQD+ +FD   ++ G +  R++ D   ++ + G ++  
Sbjct: 772  TFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAV 831

Query: 62   FIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAA 121
              Q +A    G +I+L  GW LTL++L+ +P I +   V   +++  A + +     +  
Sbjct: 832  IFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGK 891

Query: 122  VAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYSL 181
            +A + I + RTV S T E++    Y +SL   Y++ + +    G+ F     + + SY+ 
Sbjct: 892  IATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAA 951

Query: 182  AIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERK 241
            A  FG  ++ ++     +V+ V   ++ G+M++GQ S     +A    +A  +   IE+ 
Sbjct: 952  AFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKT 1011

Query: 242  PLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSG 301
            P ID+Y + G+K + + G+++   + F+YP+RP   +  G SL +  G T ALVG SG G
Sbjct: 1012 PEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCG 1071

Query: 302  KSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGK 361
            KSTV+ L+ERFYDP AG V +DG  +K+  ++W+R ++G+VSQEP+LF  SI +NI YG 
Sbjct: 1072 KSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGD 1131

Query: 362  DG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR 419
            +    S  EI+ AA+ AN  +FIDSLP   +T VG+ GTQLSGGQKQRIAIARA+++ P 
Sbjct: 1132 NSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPH 1191

Query: 420  ILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
            ILLLDEATSALD ESE+VVQEALDK    RT +++AHRLST++NADLI VI  GK+ E 
Sbjct: 1192 ILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEH 1250

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score =  476 bits (1228), Expect = e-164
 Identities = 152/471 (32%), Positives = 249/471 (52%), Gaps = 6/471 (1%)

Query: 8   GERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLA 67
             +    +R      ++   + FFDK   +G ++ R++ D+  +  S    +   ++  A
Sbjct: 93  SGKVVMTMRRRLFGHMMGMPVAFFDK-QSTGTLLSRITYDSEQVASSSSGALITVVREGA 151

Query: 68  TFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTI 127
           + IG F++     W L+++++   P + +   V+S     ++   Q         AEQ +
Sbjct: 152 SIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQML 211

Query: 128 GSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYSLAIWFGG 187
              + V  F G++    ++++   K    G+    A+ +       +A  + +  ++   
Sbjct: 212 KGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAAS 271

Query: 188 KMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPLIDAY 247
              +      G +  V   ++     L   +   + F  G AA   LF  ++ +   D  
Sbjct: 272 FPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKD-- 329

Query: 248 DSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVIS 307
                 +D   GD+E +++ F+YP R         +L IP+G T ALVG+SGSGKST+ S
Sbjct: 330 -EGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIAS 387

Query: 308 LIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGK-DGASI 366
           LI RFYD   G +L+DG +L+E+ L  +R ++ LVSQ   LF  ++ +NI Y + +  S 
Sbjct: 388 LITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSR 447

Query: 367 AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 426
            +I  AA +A A  FI+ +  GLDT++GE+G  LSGGQ+QRIAIARA+L+D  IL+LDEA
Sbjct: 448 EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEA 507

Query: 427 TSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
           TSALD ESER +Q ALD++  NRT++++AHRLST+  AD I V+  G +VE
Sbjct: 508 TSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVE 558

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score =  466 bits (1202), Expect = e-160
 Identities = 146/472 (30%), Positives = 253/472 (53%), Gaps = 6/472 (1%)

Query: 8   GERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLA 67
                 ++R       +   + FFD+E+  G ++ R++ D+  +  +    +   ++  A
Sbjct: 93  SGNVVMQMRRRLFNHFMHMPVRFFDQEST-GGLLSRITYDSEQVAGATSRALVSIVREGA 151

Query: 68  TFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTI 127
           + IG   +     W L+LV++   P +      +S    K++   QTA     + AEQ +
Sbjct: 152 SIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQML 211

Query: 128 GSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYSLAIWFGG 187
              + V S+ G++    ++++      +  +    A  +       +A  +    ++   
Sbjct: 212 KGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLAS 271

Query: 188 KMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPLIDAY 247
              +      G    V   +      L   +   S F  G AA   LF  ++ +   D  
Sbjct: 272 VDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERD-- 329

Query: 248 DSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVIS 307
            +   + + + G++++KD+ F+Y  +  +   +  S SIP G T ALVG+SGSGKST+ +
Sbjct: 330 -NGKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIAN 387

Query: 308 LIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDG-ASI 366
           L  RFYD  +G + +DG ++++++L  +R    LVSQ   LF  +I +NI Y  +G  + 
Sbjct: 388 LFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTR 447

Query: 367 AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 426
            +I  AA  A+A +FI+++PQGLDT++GE+GT LSGGQ+QR+AIARA+L+D  +L+LDEA
Sbjct: 448 EQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEA 507

Query: 427 TSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
           TSALD ESER +Q ALD++  N+T +++AHRLST+  AD I V+ +G+++E+
Sbjct: 508 TSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIER 559

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score =  449 bits (1158), Expect = e-154
 Identities = 160/474 (33%), Positives = 232/474 (48%), Gaps = 5/474 (1%)

Query: 6   VTGERQAARIRG-LYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQ 64
            T  +    IR  LY   L      F+      G++I R+  D    +D I   +     
Sbjct: 87  WTSNKILYDIRKKLYNH-LQALSARFYANNQV-GQVISRVINDVEQTKDFILTGLMNIWL 144

Query: 65  LLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAE 124
              T I    I       LTL  L   P  +LT  V    + KL      A +       
Sbjct: 145 DCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLH 204

Query: 125 QTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYSLAIW 184
           + +  I  V SF  E      +++  T      +         F A   V      + I 
Sbjct: 205 ERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIG 264

Query: 185 FGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPLI 244
            G  + +      G +   +  + +    L +     +      A+  ++F+ I+    I
Sbjct: 265 VGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDI 324

Query: 245 DAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKST 304
                    ++  +G I++  + F Y       I    +LSI  G T A VG SG GKST
Sbjct: 325 KN-GVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKST 382

Query: 305 VISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGA 364
           +I+LI RFYD  +G++LIDG N+K+F    +R +IGLV Q+ +LF+ ++K+NI  G+  A
Sbjct: 383 LINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTA 442

Query: 365 SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLD 424
           +  E++ AA++ANA  FI +LPQG DT VGE G +LSGGQKQR++IAR  L +P IL+LD
Sbjct: 443 TDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILD 502

Query: 425 EATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
           EATSALD ESE ++QEALD +  +RTT+IVAHRLST+ +AD I VI  G +VE 
Sbjct: 503 EATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVET 556

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score =  430 bits (1108), Expect = e-151
 Identities = 90/238 (37%), Positives = 143/238 (60%), Gaps = 4/238 (1%)

Query: 244 IDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKS 303
           +       +   +++G ++ +D+ F+YP+ P  Q+  G + ++  G   ALVG +GSGKS
Sbjct: 1   MSPLSG-SLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKS 59

Query: 304 TVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDG 363
           TV +L++  Y P  G+VL+DG  L ++   ++  ++  V QEP+LF  S ++NI YG   
Sbjct: 60  TVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTR 119

Query: 364 -ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILL 422
             ++ EI A A  + A  FI   PQG DT VGE G QLSGGQ+Q +A+ARA+++ PR+L+
Sbjct: 120 TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLI 179

Query: 423 LDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
           LD ATSALDA ++  VQ  L +     +RT +++  +LS    A  I  + +G + E+
Sbjct: 180 LDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQ 237

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score =  409 bits (1055), Expect = e-143
 Identities = 109/223 (48%), Positives = 149/223 (66%), Gaps = 1/223 (0%)

Query: 256 DIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP 315
               DI  ++I F Y       I +  +LSI  G    +VG+SGSGKST+  LI+RFY P
Sbjct: 3   HHHHDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP 61

Query: 316 QAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAEL 375
           + G+VLIDG +L      W+R ++G+V Q+ VL   SI DNI+    G S+ +++ AA+L
Sbjct: 62  ENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKL 121

Query: 376 ANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 435
           A A  FI  L +G +T+VGE G  LSGGQ+QRIAIARA++ +P+IL+ DEATSALD ESE
Sbjct: 122 AGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 181

Query: 436 RVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
            V+   + KI   RT +I+AHRLSTV+NAD I V+ +GK+VE+
Sbjct: 182 HVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQ 224

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score =  383 bits (987), Expect = e-133
 Identities = 94/219 (42%), Positives = 143/219 (65%), Gaps = 3/219 (1%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           +  + + F+Y      QI    S      +  A  G SG GKST+ SL+ERFY P AGE+
Sbjct: 2   LSARHVDFAYDDSE--QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDG-ASIAEIMAAAELANAA 379
            IDG  +    L+  R +IG VSQ+  +   +I++N+ YG +G  +  ++    +LA A 
Sbjct: 60  TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119

Query: 380 KFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQ 439
            F++++P  L+T VGE G ++SGGQ+QR+AIARA L++P+IL+LDEAT++LD+ESE +VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179

Query: 440 EALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
           +ALD +M  RTT+++AHRLST+ +AD I  I +G++   
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGS 218

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score =  367 bits (944), Expect = e-126
 Identities = 103/235 (43%), Positives = 159/235 (67%), Gaps = 2/235 (0%)

Query: 244 IDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKS 303
           ++++            +IE  D+ FSYP +   +     +  IPSGTT ALVG +GSGKS
Sbjct: 2   LESFSLTS-HEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKS 60

Query: 304 TVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDG 363
           T+  L+ RFYD + G++ I G N+ ++    IR  IG+V Q+ +LF  +IK NI YGK  
Sbjct: 61  TIAKLLYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLD 119

Query: 364 ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLL 423
           A+  E++ A + A    FI++LP+  DT+VG  G +LSGG++QRIAIAR +LKDP+I++ 
Sbjct: 120 ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIF 179

Query: 424 DEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
           DEATS+LD+++E + Q+A++ +  NRT +I+AHRLST+ +A+ I ++++GK+VEK
Sbjct: 180 DEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEK 234

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598

 Score =  375 bits (965), Expect = e-125
 Identities = 149/466 (31%), Positives = 262/466 (56%), Gaps = 18/466 (3%)

Query: 24  LRQDI---------GFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFV 74
           LR+++         GFFD+  H G+II R+  D   I + +G  + +F   + T  G  +
Sbjct: 112 LRKELFEKLQRVPVGFFDRTPH-GDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVI 170

Query: 75  IALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVA 134
           +      +L+LV LS +P  VL   ++S+   K     Q        + E+ I  +  + 
Sbjct: 171 MMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIK 230

Query: 135 SFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKG 194
            FT E++ + K++       K G    + +G+       V    ++L   FGG + L+  
Sbjct: 231 LFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDI 290

Query: 195 YKGGDVINVIFCVMIG--SMSLGQASPCISAFAAGQAAAYKLFEAIERKPLIDAYDSNGV 252
              G +    F       +  L + S   +      A+A ++FE ++ +   D  D + V
Sbjct: 291 ITVGTI--ATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKD--DPDAV 346

Query: 253 KLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERF 312
           +L ++RG+IE K+++FSY     + +    +  I  G   ALVG +GSGK+T+++L+ RF
Sbjct: 347 ELREVRGEIEFKNVWFSY--DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF 404

Query: 313 YDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAA 372
           YD   G++L+DG+++++ +   +R  IG+V Q+ +LF++++K+N+ YG  GA+  EI  A
Sbjct: 405 YDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEA 464

Query: 373 AELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 432
           A+L ++  FI  LP+G +T++ ++G  LS GQ+Q +AI RA L +P+IL+LDEATS +D 
Sbjct: 465 AKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDT 524

Query: 433 ESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
           ++E+ +Q A+ K+M  +T++I+AHRL+T++NADLI V+  G++VE 
Sbjct: 525 KTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEM 570

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score =  341 bits (876), Expect = e-115
 Identities = 112/247 (45%), Positives = 156/247 (63%), Gaps = 5/247 (2%)

Query: 233 KLFEAIERKPLI-DAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTT 291
            +F+ ++ +  + D        L   +G IE ++++FSY    G +     S ++  G T
Sbjct: 27  NMFDLLKEETEVKDL--PGAGPLRFQKGRIEFENVHFSY--ADGRETLQDVSFTVMPGQT 82

Query: 292 AALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS 351
            ALVG SG+GKST++ L+ RFYD  +G + IDG ++ +     +R  IG+V Q+ VLF  
Sbjct: 83  LALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFND 142

Query: 352 SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIA 411
           +I DNI YG+  A   E+ AAA+ A     I + P+G  T VGE G +LSGG+KQR+AIA
Sbjct: 143 TIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIA 202

Query: 412 RAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIH 471
           R ILK P I+LLDEATSALD  +ER +Q +L K+  NRTT++VAHRLSTV NAD I VI 
Sbjct: 203 RTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIK 262

Query: 472 QGKLVEK 478
            G +VE+
Sbjct: 263 DGCIVER 269

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score =  332 bits (855), Expect = e-108
 Identities = 127/436 (29%), Positives = 231/436 (52%), Gaps = 2/436 (0%)

Query: 41  IERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGV 100
           I R++ D   +Q+ +   +   ++    F+GG V+A+S    L+ V++  IP IVL    
Sbjct: 123 ITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVW 182

Query: 101 MSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHE 160
           ++     L  + Q +      V  + +  +R V +F  E+     + ++     +S +  
Sbjct: 183 LTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISA 242

Query: 161 GLAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPC 220
                     F F+        +WFGG ++     + G ++     +M    SL      
Sbjct: 243 FSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNI 302

Query: 221 ISAFAAGQAAAYKLFEAIERKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFN 280
           ++      A+A ++ E +  KP I     N + L ++ G +  +++ F Y     + + +
Sbjct: 303 LNFIVRASASAKRVLEVLNEKPAI-EEADNALALPNVEGSVSFENVEFRYFE-NTDPVLS 360

Query: 281 GFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340
           G + S+  G+  A++G++GSGKST+++LI R  DP+ G V +D ++++  +LK +RG I 
Sbjct: 361 GVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHIS 420

Query: 341 LVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQL 400
            V QE VLF+ +IK+N+ +G++ A+  EI+ AA++A    FI SLP+G D+ V   G   
Sbjct: 421 AVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNF 480

Query: 401 SGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLST 460
           SGGQKQR++IARA++K P++L+LD+ TS++D  +E+ + + L +     TT I+  ++ T
Sbjct: 481 SGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPT 540

Query: 461 VRNADLIAVIHQGKLV 476
              AD I V+H+GK+ 
Sbjct: 541 ALLADKILVLHEGKVA 556

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390

 Score =  198 bits (506), Expect = 4e-59
 Identities = 64/221 (28%), Positives = 111/221 (50%), Gaps = 5/221 (2%)

Query: 258 RGDIELKDIYFSYPSRPG-EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ 316
            G + +KD+   Y    G   I    S SI  G    L+G++GSGKST++S   R  +  
Sbjct: 17  GGQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT- 73

Query: 317 AGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELA 376
            GE+ IDGV+     L+  R   G++ Q+  +F+ + + N++      S  EI   A+  
Sbjct: 74  EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLD-PNAAHSDQEIWKVADEV 132

Query: 377 NAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESER 436
                I+  P  LD ++ + G  LS G KQ + +AR++L   +ILLLDE ++ LD  + +
Sbjct: 133 GLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192

Query: 437 VVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
           +++  L +   + T ++   R+  +   D   VI + K+ +
Sbjct: 193 IIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQ 233

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score =  148 bits (377), Expect = 1e-41
 Identities = 54/229 (23%), Positives = 107/229 (46%), Gaps = 26/229 (11%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           ++++++ ++Y    G     G +++I  G   A++G +G GKST+         P +G +
Sbjct: 8   LKVEELNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65

Query: 321 LIDG--VNLKEFQLKWIRGKIGLVSQEPV--LFTSSIKDNI-----NYGKDGASIAE-IM 370
           L D   ++     +  +R  IG+V Q+P   LF++S+  ++     N       I + + 
Sbjct: 66  LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD 125

Query: 371 AAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 430
            A +        D                LS GQK+R+AIA  ++ +P++L+LDE T+ L
Sbjct: 126 NALKRTGIEHLKDKPTH-----------CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174

Query: 431 DAESERVVQEALDKIM--INRTTVIVAHRLSTV-RNADLIAVIHQGKLV 476
           D      + + L ++   +  T +I  H +  V    D + V+ +G+++
Sbjct: 175 DPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVI 223

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score =  144 bits (366), Expect = 1e-40
 Identities = 55/224 (24%), Positives = 109/224 (48%), Gaps = 20/224 (8%)

Query: 258 RGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA 317
             ++ ++++   +    G  +    +  I  G   A+ G +G+GK++++ +I    +P  
Sbjct: 4   TTEVVMENVTAFW-EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62

Query: 318 GEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGK--DGASIAEIMAAAEL 375
           G++                G+I   SQ   +   +IK+NI +G   D      ++ A +L
Sbjct: 63  GKIKH-------------SGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQL 109

Query: 376 ANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 435
               + I    +  + ++GE G  LSGGQ+ RI++ARA+ KD  + LLD     LD  +E
Sbjct: 110 E---EDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE 166

Query: 436 R-VVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
           + + +  + K+M N+T ++V  ++  ++ AD I ++H+G     
Sbjct: 167 KEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFY 210

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score =  142 bits (360), Expect = 2e-39
 Identities = 41/224 (18%), Positives = 88/224 (39%), Gaps = 27/224 (12%)

Query: 261 IELKDIYFSYPSRPGE-QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 319
           I+LK++  +   +  E       +L +  G    ++G +GSGK+T++  I     P +G 
Sbjct: 2   IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGN 59

Query: 320 VLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS--SIKDNINYGKD--GASIAEIMAAAEL 375
           + I+G+ +++     IR  I   +  P  +    ++ D +   ++  G      +   + 
Sbjct: 60  IFINGMEVRK-----IRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA 114

Query: 376 AN-AAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 434
                + +                +LS GQ   +  + A+   P I+ LDE    +DA  
Sbjct: 115 LKLGEEILRRKL-----------YKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR 163

Query: 435 ERVVQEALDKIMINRTTVIVAHRLSTV-RNADLIAVIHQGKLVE 477
             V+   + +    +  ++V H L  +    +  A    G  ++
Sbjct: 164 RHVISRYIKE--YGKEGILVTHELDMLNLYKEYKAYFLVGNRLQ 205

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score =  140 bits (354), Expect = 2e-38
 Identities = 63/230 (27%), Positives = 107/230 (46%), Gaps = 27/230 (11%)

Query: 260 DIELKDIYFSYPSRPGEQI--FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA 317
            IE+ ++   +      +       SL I  G    + G +GSGKST++ ++    +P +
Sbjct: 2   RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61

Query: 318 GEVLIDGVNLKEFQLKWIRGKIGLVSQEPV--LFTSSIKDNI-----NYGKDGASIAEIM 370
           G+VL DG   +  +   IR  IG+  Q P    F   + D +     N+  D   +  + 
Sbjct: 62  GDVLYDG---ERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVK 118

Query: 371 AAAELAN--AAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 428
            A E        F D +P             LSGG+K+R+AIA  I+ +P IL+LDE   
Sbjct: 119 KAMEFVGLDFDSFKDRVPF-----------FLSGGEKRRVAIASVIVHEPDILILDEPLV 167

Query: 429 ALDAESERVVQEALDKI-MINRTTVIVAHRLSTV-RNADLIAVIHQGKLV 476
            LD E +  +   ++K   + +T ++++H + TV  + D + V+ +GK V
Sbjct: 168 GLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKV 217

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score =  142 bits (359), Expect = 3e-38
 Identities = 78/231 (33%), Positives = 118/231 (51%), Gaps = 23/231 (9%)

Query: 261 IELKDIYFSYPSRPGE-QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 319
           I+L +I   +       Q  N  SL +P+G    ++G SG+GKST+I  +     P  G 
Sbjct: 25  IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84

Query: 320 VLIDGVN---LKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYG--KDGASIAEIMA-A 372
           VL+DG     L E +L   R +IG++ Q   L +S ++  N+      D     E+    
Sbjct: 85  VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 144

Query: 373 AELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 432
            EL      +     GL      + + LSGGQKQR+AIARA+  +P++LL D+ATSALD 
Sbjct: 145 TELL---SLV-----GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDP 196

Query: 433 ESERVVQEALDKIMINR----TTVIVAHRLSTVRN-ADLIAVIHQGKLVEK 478
            + R + E L    INR    T +++ H +  V+   D +AVI  G+L+E+
Sbjct: 197 ATTRSILELLKD--INRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ 245

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237

 Score =  138 bits (349), Expect = 4e-38
 Identities = 67/225 (29%), Positives = 114/225 (50%), Gaps = 22/225 (9%)

Query: 259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG 318
             I +++  F++ +R      NG + SIP G   A+VGQ G GKS+++S +    D   G
Sbjct: 2   NSITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60

Query: 319 EVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGK--DGASIAEIMAAAELA 376
            V I             +G +  V Q+  +   S+++NI +G   +      ++ A  L 
Sbjct: 61  HVAI-------------KGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALL 107

Query: 377 NAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE-SE 435
                ++ LP G  T +GE G  LSGGQKQR+++ARA+  +  I L D+  SA+DA   +
Sbjct: 108 ---PDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK 164

Query: 436 RVVQEAL--DKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
            + +  +    ++ N+T ++V H +S +   D+I V+  GK+ E 
Sbjct: 165 HIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEM 209

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290

 Score =  135 bits (342), Expect = 1e-36
 Identities = 58/227 (25%), Positives = 108/227 (47%), Gaps = 20/227 (8%)

Query: 255 DDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD 314
           ++ +       + FS  S  G  +    +  I  G   A+ G +G+GK++++ +I    +
Sbjct: 30  NNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 89

Query: 315 PQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGK--DGASIAEIMAA 372
           P  G++                G+I   SQ   +   +IK+NI  G   D      ++ A
Sbjct: 90  PSEGKIKH-------------SGRISFCSQNSWIMPGTIKENI-IGVSYDEYRYRSVIKA 135

Query: 373 AELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 432
            +L    + I    +  + ++GE G  LSGGQ+ RI++ARA+ KD  + LLD     LD 
Sbjct: 136 CQLE---EDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192

Query: 433 ESERVV-QEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
            +E+ + +  + K+M N+T ++V  ++  ++ AD I ++H+G     
Sbjct: 193 LTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFY 239

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score =  133 bits (337), Expect = 5e-36
 Identities = 49/227 (21%), Positives = 97/227 (42%), Gaps = 15/227 (6%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           I+L  I      +    I    S  I  G    L G +G+GK+T+++++  +    +G V
Sbjct: 22  IQLDQIGRMKQGKT---ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78

Query: 321 LIDGVNL--KEFQLKWIRGKIGLVSQE---PVLFTSSIKDNINYGKDGAS-IAEIMAAAE 374
            + G       +  + +R  IG VS            + D +  G   +  + + +    
Sbjct: 79  NLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI 138

Query: 375 LANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 434
              A + +  +  G+     ++   LS G+KQR+ IARA++  P++L+LDE  + LD  +
Sbjct: 139 RNEAHQLLKLV--GMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIA 196

Query: 435 ERVVQEALDKIMINRTT---VIVAHRLSTVRNA-DLIAVIHQGKLVE 477
              +   LD +  +  T   + V H +  +      I ++  G+ ++
Sbjct: 197 RESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQ 243

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score =  139 bits (352), Expect = 7e-36
 Identities = 45/245 (18%), Positives = 81/245 (33%), Gaps = 30/245 (12%)

Query: 238 IERKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQ 297
              + L          L +                  G+ + N             ++G+
Sbjct: 329 FRTEALQFRIADATEDLQNDSASRAFSYPSLKK--TQGDFVLNVEEGEFSDSEILVMMGE 386

Query: 298 SGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPV--LFTSSIKD 355
           +G+GK+T+I L+     P  G+ +          +     KI       V  LF   I+ 
Sbjct: 387 NGTGKTTLIKLLAGALKPDEGQDIPKL------NVSMKPQKIAPKFPGTVRQLFFKKIRG 440

Query: 356 NINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL 415
                 +     +++    + +    ID   Q            LSGG+ QR+AI  A+ 
Sbjct: 441 QF---LNPQFQTDVVKPLRIDD---IIDQEVQ-----------HLSGGELQRVAIVLALG 483

Query: 416 KDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQ 472
               I L+DE ++ LD+E   +  + + + +    +T  IV H        AD + V   
Sbjct: 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEG 543

Query: 473 GKLVE 477
                
Sbjct: 544 IPSKN 548

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score =  118 bits (297), Expect = 1e-28
 Identities = 45/243 (18%), Positives = 83/243 (34%), Gaps = 43/243 (17%)

Query: 260 DIELKDIYFSYPSRPGEQIFNGF----SLSIPSGTTAALVGQSGSGKSTVISLI------ 309
                 +   Y +       N F      +   G    LVG +G GKST + ++      
Sbjct: 77  TNLEAHVTHRYSA-------NSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKP 129

Query: 310 --ERFYDPQAGEVLIDGVNLKEFQ---LKWIRGKIGLVSQEPV--LFTSSIKDNI----- 357
              RF DP   + +I      E Q    K +   I  + +         +IK  +     
Sbjct: 130 NLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGE 189

Query: 358 NYGKDGASIAE-IMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK 416
                     E +    ++      +    +           +LSGG+ QR AI  + ++
Sbjct: 190 LLKLRMEKSPEDVKRYIKILQLENVLKRDIE-----------KLSGGELQRFAIGMSCVQ 238

Query: 417 DPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVA-HRLSTVRN-ADLIAVIHQGK 474
           +  + + DE +S LD +      + +  ++     VI   H LS +   +D + +I+   
Sbjct: 239 EADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298

Query: 475 LVE 477
            V 
Sbjct: 299 SVY 301

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score =  126 bits (318), Expect = 5e-34
 Identities = 47/226 (20%), Positives = 103/226 (45%), Gaps = 37/226 (16%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           +E++D+   Y     + +    +++I  G      G +G GK+T++  I  +  P  GE+
Sbjct: 11  LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNIN-----YGKDGA--SIAEIMAA 372
           + +GV + +     ++GKI  + +E ++    S++D +      YG       I + + +
Sbjct: 67  IYNGVPITK-----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 121

Query: 373 AELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 432
            E+ +  K +                +LS G  +R+ +A  +L +  I +LD+   A+D 
Sbjct: 122 VEVLDLKKKLG---------------ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDE 166

Query: 433 ESERVVQEALDKIMINRTTVIVA--HRLSTVRNADLIAVIHQGKLV 476
           +S+  V +++ +I+  +  VI++    LS     D+   +H+    
Sbjct: 167 DSKHKVLKSILEILKEKGIVIISSREELSYC---DVNENLHKYSTK 209

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score =  127 bits (322), Expect = 4e-32
 Identities = 48/223 (21%), Positives = 88/223 (39%), Gaps = 32/223 (14%)

Query: 264 KDIYFSYPS---RPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           ++   +YP      G          I  G    +VG +G GK+T + ++    +P  G++
Sbjct: 284 RETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKI 343

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPV--LFTSSIKDNINYGKDGASIAEIMAAAELANA 378
             D        + +    I    +  V  L +      +N         E++    + + 
Sbjct: 344 EWDL------TVAYKPQYIKADYEGTVYELLSKIDASKLN---SNFYKTELLKPLGIID- 393

Query: 379 AKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVV 438
               D               +LSGG+ QR+AIA  +L+D  I LLDE ++ LD E    V
Sbjct: 394 --LYDREVN-----------ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV 440

Query: 439 QEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVEK 478
             A+  +M    +T ++V H +  +   +D + V  +G+  + 
Sbjct: 441 SRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVF-EGEPGKY 482

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score =  121 bits (305), Expect = 8e-30
 Identities = 51/230 (22%), Positives = 90/230 (39%), Gaps = 32/230 (13%)

Query: 264 KDIYFSYPSRPGEQIF-NGFSLSIPSGTTAALVGQSGSGKSTVIS-----LIERFYD-PQ 316
           +D    Y    G   F       +  G    +VG +G+GKST +      LI        
Sbjct: 25  EDCVHRY----GVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDND 80

Query: 317 AGEVLIDGVNLKEFQLKWIR---GKIGLVSQEPVLFTSSI----KDNINYGKDGASIAEI 369
           + + +I      E Q  + +   G+I  V +    +   I    K  +           +
Sbjct: 81  SWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQ--YVDLIPKAVKGKVIEL--------L 130

Query: 370 MAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 429
             A E     + + +L   L+ ++      LSGG+ QR+AIA A+L++      DE +S 
Sbjct: 131 KKADETGKLEEVVKAL--ELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSY 188

Query: 430 LDAESERVVQEALDKIMINRTTVIVA-HRLSTVRN-ADLIAVIHQGKLVE 477
           LD         A+ ++     +V+V  H L+ +   +D+I V++    V 
Sbjct: 189 LDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVY 238

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score =  121 bits (307), Expect = 7e-32
 Identities = 74/233 (31%), Positives = 112/233 (48%), Gaps = 32/233 (13%)

Query: 261 IELKDIYFSYPSRPGE-QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 319
           I++  +  S+    G  ++  G ++ I  G    ++G SGSGKST +  +    D   GE
Sbjct: 25  IDVHQLKKSF----GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGE 80

Query: 320 VLIDGVNL--KEFQLKWIRGKIGLVSQEPVLFT-SSIKDNINYG-----KDGASIAEIMA 371
           ++IDG+NL  K+  L  +R ++G+V Q   LF   ++ +NI        K     AE  A
Sbjct: 81  IIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKA 140

Query: 372 AAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 431
              L            GL      +   LSGGQ QR+AIARA+  +P+I+L DE TSALD
Sbjct: 141 MELLDKV---------GLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALD 191

Query: 432 AESERVVQEALDKIMIN-----RTTVIVAHRLSTVRN-ADLIAVIHQGKLVEK 478
            E   +V E L  +M        T V+V H +   R   D +  +  G ++E+
Sbjct: 192 PE---MVGEVLS-VMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEE 240

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262

 Score =  120 bits (304), Expect = 2e-31
 Identities = 69/246 (28%), Positives = 113/246 (45%), Gaps = 48/246 (19%)

Query: 261 IELKDIYFSYPSRPGE-QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 319
           + + D++  Y    G  ++  G SL   +G   +++G SGSGKST +  I     P  G 
Sbjct: 7   LHVIDLHKRY----GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA 62

Query: 320 VLIDGVNL-------------KEFQLKWIRGKIGLVSQEPVLFT-SSIKDNINYG----- 360
           ++++G N+              + QL+ +R ++ +V Q   L++  ++ +N+        
Sbjct: 63  IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL 122

Query: 361 KDGASIAEIMAAAELAN---AAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD 417
                 A   A   LA      +     P             LSGGQ+QR++IARA+  +
Sbjct: 123 GLSKHDARERALKYLAKVGIDERAQGKYP-----------VHLSGGQQQRVSIARALAME 171

Query: 418 PRILLLDEATSALDAESERVVQEALDKIMIN-----RTTVIVAHRLSTVRN-ADLIAVIH 471
           P +LL DE TSALD E   +V E L  IM       +T V+V H +   R+ +  +  +H
Sbjct: 172 PDVLLFDEPTSALDPE---LVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLH 227

Query: 472 QGKLVE 477
           QGK+ E
Sbjct: 228 QGKIEE 233

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score =  125 bits (317), Expect = 3e-31
 Identities = 49/223 (21%), Positives = 86/223 (38%), Gaps = 32/223 (14%)

Query: 264 KDIYFSYPS---RPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           ++    YP      G          I  G    +VG +G GK+T + ++    +P  G+V
Sbjct: 354 RETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 413

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPV--LFTSSIKDNINYGKDGASIAEIMAAAELANA 378
             D        + +    I    +  V  L +      +N         E++    + + 
Sbjct: 414 EWDL------TVAYKPQYIKAEYEGTVYELLSKIDSSKLN---SNFYKTELLKPLGIID- 463

Query: 379 AKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVV 438
               D   +            LSGG+ QR+AIA  +L+D  I LLDE ++ LD E    V
Sbjct: 464 --LYDRNVE-----------DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV 510

Query: 439 QEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVEK 478
             A+  +M    +T ++V H +  +   +D + V  +G+    
Sbjct: 511 SRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF-EGEPGRH 552

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score =  119 bits (300), Expect = 5e-29
 Identities = 48/226 (21%), Positives = 88/226 (38%), Gaps = 24/226 (10%)

Query: 264 KDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVIS-----LIERFYD-PQA 317
           +D    Y               +  G    +VG +G+GK+T +      LI    +   +
Sbjct: 95  EDCVHRYGVN---AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDS 151

Query: 318 GEVLIDGVNLKEFQLKWIR---GKIGLVSQEPVLFTSSI-KDNINYGKDGASIAEIMAAA 373
            + +I      E Q  + R   G+I  V +    +   + K      ++     + +   
Sbjct: 152 WDNVIRAFRGNELQNYFERLKNGEIRPVVKPQ--YVDLLPKAVKGKVRELLKKVDEVGKF 209

Query: 374 ELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 433
           E       ++++   LD  +     QLSGG+ QR+AIA A+L+       DE +S LD  
Sbjct: 210 EEVVKELELENV---LDRELH----QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIR 262

Query: 434 SERVVQEALDKIMINRTTVIVA-HRLSTVRN-ADLIAVIHQGKLVE 477
               V   + ++      V+V  H L+ +   +D+I V++    V 
Sbjct: 263 QRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVY 308

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score =  125 bits (315), Expect = 4e-31
 Identities = 49/234 (20%), Positives = 92/234 (39%), Gaps = 39/234 (16%)

Query: 264 KDIYFSYPSRPGEQIFNGFSLSIP-SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 322
            ++   Y        F  F L  P + T   ++G++G GK+TV+ ++     P  G+   
Sbjct: 3   GEVIHRY----KVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGD--P 56

Query: 323 DGVNLKEFQLKWIRGK-IGLVSQEPVLFTSSIK--------DNI--------NYGKDGAS 365
           +    K+  LK  RGK I    +E   +++ +K        +          N       
Sbjct: 57  NSKVGKDEVLKRFRGKEIYNYFKEL--YSNELKIVHKIQYVEYASKFLKGTVNEILTKID 114

Query: 366 IAEIMA-AAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLD 424
                    EL N     +                LSGG  QR+ +A ++L++  + + D
Sbjct: 115 ERGKKDEVKELLNMTNLWNKDAN-----------ILSGGGLQRLLVAASLLREADVYIFD 163

Query: 425 EATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477
           + +S LD      + +A+ +++ N+  ++V H L  +    DLI +I+    V 
Sbjct: 164 QPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVY 217

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score =  123 bits (312), Expect = 8e-31
 Identities = 45/235 (19%), Positives = 86/235 (36%), Gaps = 33/235 (14%)

Query: 252 VKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIER 311
           V   D+  D++ K  +     + G+      +     G    ++G +G GK+T   ++  
Sbjct: 257 VSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVG 316

Query: 312 FYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEP-----VLFTSSIKDNINYGKDGASI 366
                 G V  +           +  K   +             ++ KD ++        
Sbjct: 317 EITADEGSVTPEKQI--------LSYKPQRIFPNYDGTVQQYLENASKDALS--TSSWFF 366

Query: 367 AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 426
            E+     L      ++S               LSGG+ Q++ IA  + K+  + +LD+ 
Sbjct: 367 EEVTKRLNLHR---LLESNVN-----------DLSGGELQKLYIAATLAKEADLYVLDQP 412

Query: 427 TSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVEK 478
           +S LD E   +V +A+ ++       T I+ H LS     AD I V  +G+  + 
Sbjct: 413 SSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVF-KGEPEKA 466

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score =  118 bits (299), Expect = 8e-31
 Identities = 55/233 (23%), Positives = 96/233 (41%), Gaps = 48/233 (20%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           + ++++ F Y +     +F   +  +  G   A++GQ+G GKST++ L+   + P  G++
Sbjct: 5   LSVENLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVL-FTSSIKDNINYG-------------KDGASI 366
            +                IG V Q     F  S+ D +  G              D    
Sbjct: 63  EVYQ-------------SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVA 109

Query: 367 AEIMAAAELAN-AAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 425
            + +    L + A +                   LSGGQ+Q I IARAI  + +++LLDE
Sbjct: 110 MQALDYLNLTHLAKREFT---------------SLSGGQRQLILIARAIASECKLILLDE 154

Query: 426 ATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTV-RNADLIAVIHQGKL 475
            TSALD  ++ +V   L  +    N T V   H+ + V   A+   ++++   
Sbjct: 155 PTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNF 207

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score =  116 bits (294), Expect = 4e-30
 Identities = 53/209 (25%), Positives = 90/209 (43%), Gaps = 27/209 (12%)

Query: 280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339
            G S  I  G    L+G +G+GK+T + +I     P +G V + G N+ E +   +R  I
Sbjct: 32  KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLI 90

Query: 340 GLVSQEPVLFTS-SIKDNIN-----YGKDGAS----IAEIMAAAELANAAKFIDSLPQGL 389
             + +E   + +    + +      Y    +     +      A L              
Sbjct: 91  SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKI---------- 140

Query: 390 DTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINR 449
              V       S G  +++ IARA++ +PR+ +LDE TS LD  + R V++ L +     
Sbjct: 141 KDRVST----YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEG 196

Query: 450 TTVIV-AHRLSTV-RNADLIAVIHQGKLV 476
            T++V +H +  V    D IA+IH G +V
Sbjct: 197 LTILVSSHNMLEVEFLCDRIALIHNGTIV 225

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score =  115 bits (290), Expect = 8e-30
 Identities = 69/238 (28%), Positives = 117/238 (49%), Gaps = 35/238 (14%)

Query: 261 IELKDIYFSYPSRPGEQIF---NGFSLSIPSGTTAALVGQSGSGKST---VISLIERFYD 314
           ++LK++  +Y    GE+I       +L+I  G   +++G SGSGKST   +I  +++   
Sbjct: 2   VKLKNVTKTYKM--GEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--- 56

Query: 315 PQAGEVLIDGVN---LKEFQLKWIRG-KIGLVSQE----PVLFTSSIKDNIN----YGKD 362
           P  GEV ID +    L + +L  IR  KIG V Q+    P+L   +  +N+     +   
Sbjct: 57  PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL---TALENVELPLIF--- 110

Query: 363 GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHG-TQLSGGQKQRIAIARAILKDPRIL 421
                 +        A + +      L+     H   QLSGGQ+QR+AIARA+  +P I+
Sbjct: 111 -KYRGAMSGEERRKRALECLKMA--ELEERFANHKPNQLSGGQQQRVAIARALANNPPII 167

Query: 422 LLDEATSALDAESERVVQEALDKI--MINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
           L D+ T ALD+++   + + L K+     +T V+V H ++  R  + I  +  G++  
Sbjct: 168 LADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score =  118 bits (298), Expect = 9e-30
 Identities = 69/233 (29%), Positives = 111/233 (47%), Gaps = 36/233 (15%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           + +  +  S+ + P   + N  SLS+  G    ++G SG GK+T++  +  F  P +GE+
Sbjct: 5   LHIGHLSKSFQNTP---VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61

Query: 321 LIDG--VNLKEFQLKWIRGKIGLVSQEPVLF---TSSIKDNINYG--KDGASIAEIMAAA 373
            + G  +  K   L     ++G + QE VLF   T  +  NI YG        A+     
Sbjct: 62  SLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLT--VYRNIAYGLGNGKGRTAQERQRI 119

Query: 374 ----ELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 429
               EL   ++     P            +LSGGQ+QR A+ARA+  DP ++LLDE  SA
Sbjct: 120 EAMLELTGISELAGRYPH-----------ELSGGQQQRAALARALAPDPELILLDEPFSA 168

Query: 430 LDAESERVVQEALDKIM--INRTTVIVAH----RLSTVRNADLIAVIHQGKLV 476
           LD +  R ++E +   +    ++ V V+H     L     AD IAV+ QG+++
Sbjct: 169 LDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQY---ADRIAVMKQGRIL 218

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score =  114 bits (288), Expect = 2e-29
 Identities = 63/195 (32%), Positives = 94/195 (48%), Gaps = 27/195 (13%)

Query: 293 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS- 351
            L+G +G+GKS  + LI     P  GEV ++G ++    L   R  IG V Q+  LF   
Sbjct: 28  VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGIGFVPQDYALFPHL 85

Query: 352 SIKDNINYGKDGASIAEI----MAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQR 407
           S+  NI YG       E        AE    A  +D  P            +LSGG++QR
Sbjct: 86  SVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA-----------RLSGGERQR 134

Query: 408 IAIARAILKDPRILLLDEATSALDAESERVVQEALDKI--MINRTTVIVAH----RLSTV 461
           +A+ARA++  PR+LLLDE  SA+D +++ V+ E L  +    +   + V H         
Sbjct: 135 VALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAML- 193

Query: 462 RNADLIAVIHQGKLV 476
             AD +AV+  G++V
Sbjct: 194 --ADEVAVMLNGRIV 206

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score =  113 bits (286), Expect = 3e-29
 Identities = 60/230 (26%), Positives = 99/230 (43%), Gaps = 28/230 (12%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           +  ++I          +I  G SLS+  G   +++G SGSGKST++ ++     P  G+V
Sbjct: 5   LRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKV 61

Query: 321 LIDGVN---LKEFQLKWIR-GKIGLVSQE----PVLFTSSIKDNIN----YGKDGASIAE 368
            ++G       E +L  +R  K+G V Q     P L   +  +N+             A+
Sbjct: 62  FLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPEL---TALENVIVPMLKMGKPKKEAK 118

Query: 369 IMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 428
                 L+           GL   +     +LSGG++QR+AIARA+  +P +L  DE T 
Sbjct: 119 ERGEYLLSEL---------GLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTG 169

Query: 429 ALDAESERVVQEALDKI-MINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
            LD+ + + V +   KI     + V+V H             +  GK+V 
Sbjct: 170 NLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score =  114 bits (288), Expect = 2e-28
 Identities = 65/228 (28%), Positives = 105/228 (46%), Gaps = 31/228 (13%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           IE   +   YP   G +   G S  I  G    L+G SGSGK+T++ LI     P  G+V
Sbjct: 15  IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYG--KDGASIAEI----MAAA 373
            I G  +    L   +  +GLV Q   LF   ++ DN+++G  +      E+        
Sbjct: 73  WIGGKRVT--DLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130

Query: 374 ELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 433
                  + +  P            +LSGGQ+QR+A+ARA+   P++LL DE  +A+D +
Sbjct: 131 RFMRLESYANRFP-----------HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179

Query: 434 SERVVQEALDKI--MINRTTVIVAH----RLSTVRNADLIAVIHQGKL 475
             R ++  + ++   +  T+V V H     L     AD + V+H+G +
Sbjct: 180 IRRELRTFVRQVHDEMGVTSVFVTHDQEEALEV---ADRVLVLHEGNV 224

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score =  114 bits (288), Expect = 2e-28
 Identities = 63/229 (27%), Positives = 105/229 (45%), Gaps = 36/229 (15%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           IE++ +   +         +  SL + SG    ++G +G+GK+  + LI  F+ P +G +
Sbjct: 2   IEIESLSRKW----KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57

Query: 321 LIDGV---NLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYG--KDGASIAE-IMAAA 373
           L+DG    +L   +       I  V Q   LF   ++K N+ +G         + ++  A
Sbjct: 58  LLDGKDVTDLSPEK----HD-IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTA 112

Query: 374 ELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 433
                   +D  P             LSGG++QR+A+ARA++ +P+ILLLDE  SALD  
Sbjct: 113 RDLKIEHLLDRNP-----------LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161

Query: 434 SERVVQEALDKI--MINRTTVIVAH----RLSTVRNADLIAVIHQGKLV 476
           ++   +E L  +      T + + H           AD IAV+  GKL+
Sbjct: 162 TQENAREMLSVLHKKNKLTVLHITHDQTEARIM---ADRIAVVMDGKLI 207

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score =  109 bits (275), Expect = 2e-27
 Identities = 48/221 (21%), Positives = 89/221 (40%), Gaps = 39/221 (17%)

Query: 275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW 334
                   S  + +G    LVG +G+GKST+++ +        G +   G  L+ +    
Sbjct: 12  ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATK 70

Query: 335 IRGKIGLVSQEPVL-FTSSIKDNINYG----KDGASIAEIMAAAELAN-AAKFIDSLPQG 388
           +      +SQ+    F + +   +            + ++  A  L +   +  +     
Sbjct: 71  LALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTN----- 125

Query: 389 LDTMVGEHGTQLSGGQKQRIAIARAIL-------KDPRILLLDEATSALDAESERVVQEA 441
                     QLSGG+ QR+ +A  +L          ++LLLDE  ++LD       Q A
Sbjct: 126 ----------QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQ----QSA 171

Query: 442 LDKIM-----INRTTVIVAHRLS-TVRNADLIAVIHQGKLV 476
           LDKI+          V+ +H L+ T+R+A    ++  GK++
Sbjct: 172 LDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKML 212

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score =  103 bits (259), Expect = 1e-24
 Identities = 59/240 (24%), Positives = 106/240 (44%), Gaps = 47/240 (19%)

Query: 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 319
            I +K++   +       + +  +++I +G    ++G SG+GK+T + +I     P  GE
Sbjct: 3   RIIVKNVSKVFKKGKVVAL-DNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61

Query: 320 VLIDGVNLKEFQLKWIRGK---IGLVSQEPVLF-TSSIKDNINYG--KDGASIAEI---- 369
           +  D   +       +  +   IG+V Q   L+   +  +NI +       S  EI    
Sbjct: 62  LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121

Query: 370 MAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 429
              A++ +    ++  P+           +LSG Q+QR+A+ARA++KDP +LLLDE  S 
Sbjct: 122 EEVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSN 170

Query: 430 LDA--------ESERVVQEALDKIMINRTTVIVAH------RLSTVRNADLIAVIHQGKL 475
           LDA          + V         +  T ++V+H       +     AD + V+ +GKL
Sbjct: 171 LDARMRDSARALVKEVQSR------LGVTLLVVSHDPADIFAI-----ADRVGVLVKGKL 219

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362

 Score = 91.5 bits (228), Expect = 2e-20
 Identities = 75/242 (30%), Positives = 114/242 (47%), Gaps = 58/242 (23%)

Query: 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 319
           +I+L++I   +         N  +L I  G   AL+G SGSGKST++  I   Y P +G+
Sbjct: 3   EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59

Query: 320 VLIDG--VNL---KEFQLKWIRGKIGLVSQEPVLF-TSSIKDNINYG-----KDGASIAE 368
           +  D   V     K+      R  +GLV Q   L+   ++  NI +           I +
Sbjct: 60  IYFDEKDVTELPPKD------RN-VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDK 112

Query: 369 -IMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 427
            +   A++ +  K ++  P            QLSGGQ+QR+AIARA++K+P +LLLDE  
Sbjct: 113 KVREVAKMLHIDKLLNRYPW-----------QLSGGQQQRVAIARALVKEPEVLLLDEPL 161

Query: 428 SALDA--------ESERVVQEALDKIMINRTTVIVAH------RLSTVRNADLIAVIHQG 473
           S LDA        E +R+ +E      +  TTV V H       +     AD IAVI +G
Sbjct: 162 SNLDALLRLEVRAELKRLQKE------LGITTVYVTHDQAEALAM-----ADRIAVIREG 210

Query: 474 KL 475
           ++
Sbjct: 211 EI 212

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359

 Score = 86.9 bits (216), Expect = 8e-19
 Identities = 54/185 (29%), Positives = 84/185 (45%), Gaps = 33/185 (17%)

Query: 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 319
            I + ++   +      +  +G S  +  G   AL+G SG GK+T + ++   Y P +GE
Sbjct: 3   SIRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE 59

Query: 320 VLIDG--VNL---KEFQLKWIRGKIGLVSQEPVLF-TSSIKDNINYG--KDGASIAEIMA 371
           +  D   VN    K       R  +G+V Q   L+   ++ +NI +       S  E+  
Sbjct: 60  IYFDDVLVNDIPPKY------RE-VGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEK 112

Query: 372 ----AAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 427
                A        +D  P            QLSGGQ+QR+A+ARA++K P++LL DE  
Sbjct: 113 RVVEIARKLLIDNLLDRKPT-----------QLSGGQQQRVALARALVKQPKVLLFDEPL 161

Query: 428 SALDA 432
           S LDA
Sbjct: 162 SNLDA 166

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372

 Score = 83.4 bits (207), Expect = 1e-17
 Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 33/185 (17%)

Query: 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 319
           +++L+++   +         N  +L+I  G    L+G SG GK+T + +I    +P  G 
Sbjct: 11  EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 67

Query: 320 VLIDG--VNL---KEFQLKWIRGKIGLVSQEPVLF-TSSIKDNINYG-----KDGASIAE 368
           +      V     K+      R  I +V Q   ++   ++ +NI +           I +
Sbjct: 68  IYFGDRDVTYLPPKD------RN-ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDK 120

Query: 369 -IMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 427
            +  AAEL    + ++  P            QLSGGQ+QR+A+ARAI+ +P +LL+DE  
Sbjct: 121 RVRWAAELLQIEELLNRYPA-----------QLSGGQRQRVAVARAIVVEPDVLLMDEPL 169

Query: 428 SALDA 432
           S LDA
Sbjct: 170 SNLDA 174

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372

 Score = 83.1 bits (206), Expect = 2e-17
 Identities = 51/185 (27%), Positives = 82/185 (44%), Gaps = 27/185 (14%)

Query: 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 319
            + L D++  +            SL +  G    L+G SG GK+T + +I    +P  G+
Sbjct: 3   GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59

Query: 320 VLIDG--VNLKEFQLKWI---RGKIGLVSQEPVLF-TSSIKDNINYG--KDGASIAEIMA 371
           + I    V   E  +      R  I +V Q   L+   ++ DNI +          EI  
Sbjct: 60  IYIGDKLVADPEKGIFVPPKDRD-IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQ 118

Query: 372 ----AAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 427
                AEL    + ++  P+           +LSGGQ+QR+A+ RAI++ P++ L+DE  
Sbjct: 119 RVREVAELLGLTELLNRKPR-----------ELSGGQRQRVALGRAIVRKPQVFLMDEPL 167

Query: 428 SALDA 432
           S LDA
Sbjct: 168 SNLDA 172

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381

 Score = 81.4 bits (202), Expect = 6e-17
 Identities = 55/195 (28%), Positives = 87/195 (44%), Gaps = 51/195 (26%)

Query: 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLI---ERFYDPQ 316
            ++L+++  ++       +    +L I  G     VG SG GKST++ +I   E      
Sbjct: 3   SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE---TIT 56

Query: 317 AGEVLIDG--VNL---KEFQLKWIRGKIGLVSQEPVLFTS-------SIKDNINYG-K-D 362
           +G++ I    +N     E      RG +G+V      F S       S+ +N+++G K  
Sbjct: 57  SGDLFIGEKRMNDTPPAE------RG-VGMV------FQSYALYPHLSVAENMSFGLKLA 103

Query: 363 GASIAEI----MAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDP 418
           GA    I       AE+   A  +D  P+            LSGGQ+QR+AI R ++ +P
Sbjct: 104 GAKKEVINQRVNQVAEVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEP 152

Query: 419 RILLLDEATSALDAE 433
            + LLDE  S LDA 
Sbjct: 153 SVFLLDEPLSNLDAA 167

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 78.7 bits (195), Expect = 1e-16
 Identities = 50/214 (23%), Positives = 96/214 (44%), Gaps = 24/214 (11%)

Query: 280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG---VNLKEFQLKWIR 336
           +G S+S+  G    ++G +GSGKST+I++I  F     G V  +     N +  +L    
Sbjct: 24  DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL---- 79

Query: 337 GKIGLVS--QEPVLFTS-SIKDNI-----NYGKDG--ASIAEIMAAAE---LANAAKFID 383
              G+V   Q P      ++ +N+       G+    +   +     E   +  A K ++
Sbjct: 80  YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE 139

Query: 384 SLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALD 443
            L   L  +      +LSGGQ + + I RA++ +P+++++DE  + +       +   + 
Sbjct: 140 FL--KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 197

Query: 444 KIMINRTTV-IVAHRLSTVRN-ADLIAVIHQGKL 475
           ++     T  I+ HRL  V N  D + V+  G++
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQI 231

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 80.9 bits (199), Expect = 3e-16
 Identities = 53/238 (22%), Positives = 91/238 (38%), Gaps = 36/238 (15%)

Query: 246 AYDSNGVKLDDIRGDIELKDIYFSYPSRP--GEQIFNGFSLSIPSGTTAALVGQSGSGKS 303
           A D+  V  +    + E +D+     S     + + N   L +       + G +G GKS
Sbjct: 416 AVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKS 475

Query: 304 TVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDG 363
           T++  I       A    +DG   +E        +   V  +     S            
Sbjct: 476 TLMRAI-------ANG-QVDGFPTQE------ECRTVYVEHDIDGTHSDT---------- 511

Query: 364 ASIAEIMAAAELANAAKFIDSLP--QGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRIL 421
            S+ + +  + +       D L      D M+    + LSGG K ++A+ARA+L++  IL
Sbjct: 512 -SVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADIL 570

Query: 422 LLDEATSALDAESERVVQEALDKIMINRTTVIVAHR---LSTVRNADLIAVIHQGKLV 476
           LLDE T+ LD  +   +   L+      T++ ++H    L  V   + I      KL 
Sbjct: 571 LLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNV--CEYIINYEGLKLR 624

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 61.6 bits (149), Expect = 4e-10
 Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 3/79 (3%)

Query: 399 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRL 458
            LSGGQK ++ +A    + P +++LDE T+ LD +S   + +AL +       +I+ H  
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE--FEGGVIIITHSA 958

Query: 459 STVRN-ADLIAVIHQGKLV 476
              +N  + +  +  G++ 
Sbjct: 959 EFTKNLTEEVWAVKDGRMT 977

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 48.9 bits (116), Expect = 3e-06
 Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 12/95 (12%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           +++ ++ F YP    +      +      +  A++G +G+GKST+I+++     P +GEV
Sbjct: 672 VKVTNMEFQYPGTS-KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKD 355
                N           +I  + Q       S  D
Sbjct: 731 YT-HENC----------RIAYIKQHAFAHIESHLD 754

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 65.6 bits (161), Expect = 2e-12
 Identities = 51/207 (24%), Positives = 93/207 (44%), Gaps = 32/207 (15%)

Query: 262 ELKDIYFSYPSRPGE-QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           E++ ++  Y    G      G  L +P G    L+G +G+GK+T +S I      Q G++
Sbjct: 8   EVQSLHVYY----GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63

Query: 321 LIDGVNLKEFQLKWI--RGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELAN 377
           + +G ++       I   G I LV +   +F   ++ +N+           +M A    +
Sbjct: 64  IFNGQDITNKPAHVINRMG-IALVPEGRRIFPELTVYENL-----------MMGAYNRKD 111

Query: 378 AAKFIDSLPQGLDTM--VGEHGTQ----LSGGQKQRIAIARAILKDPRILLLDEATSALD 431
                  L         + E   Q    LSGG++Q +AI RA++  P++L++DE +  L 
Sbjct: 112 KEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGL- 170

Query: 432 AESERVVQEALDKI-MINR--TTVIVA 455
             +  +V E  + I  IN+  TT+++ 
Sbjct: 171 --APILVSEVFEVIQKINQEGTTILLV 195

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.1 bits (155), Expect = 6e-11
 Identities = 68/534 (12%), Positives = 147/534 (27%), Gaps = 154/534 (28%)

Query: 7   TGERQAA--RIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQ 64
           TGE Q     I  ++    +  +    D +     I+ +   D +++         +   
Sbjct: 11  TGEHQYQYKDILSVFEDAFVD-NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69

Query: 65  LLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYS-IAAAVA 123
            L          LSK                    V   V   L    +  Y  + + + 
Sbjct: 70  TL----------LSKQ----------------EEMVQKFVEEVL----RINYKFLMSPIK 99

Query: 124 EQTIGSIRTVASFTGEK-------QAVAKYN-------ESLTKAYKS-------GVHEGL 162
            +          +  ++       Q  AKYN         L +A           +  G+
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID-GV 158

Query: 163 AAGLGFGAFTFVA--FSSYSLAIWFGGKMI-LEKGY--KGGDVINVI--FCVMIGSMSLG 215
               G G          SY +      K+  L          V+ ++      I      
Sbjct: 159 L---GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215

Query: 216 QASPCISAFAAGQAAAYKLFEAIERKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPG 275
           ++    +      +   +L   ++ KP  +      V L +++      +          
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL---V-LLNVQ------N---------- 255

Query: 276 EQIFNGFSLS----IPSGTT--AALVGQSGSGKSTVISLIER---FYDPQAGEVLIDGVN 326
            + +N F+LS    +   TT    +     +  +T ISL          +   +L+  ++
Sbjct: 256 AKAWNAFNLSCKILL---TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 327 LKEFQLKWIRGKIG--LVSQEPVLFTSSIKDNIN-------YGKDGASIAEIMAAAELAN 377
            +   L           +S    +   SI+D +           D   +  I+ +     
Sbjct: 313 CRPQDLPREVLTTNPRRLS----IIAESIRDGLATWDNWKHVNCD--KLTTIIES----- 361

Query: 378 AAKFIDSLPQGLDTMVGEHGTQLSGGQKQR---IAIARAILKDPRILLLDEATSAL---- 430
               ++ L                   ++    +++       P ILL     S +    
Sbjct: 362 ---SLNVLE--------------PAEYRKMFDRLSVFPPSAHIPTILL-----SLIWFDV 399

Query: 431 -DAESERVVQEALDKIMINR-----TTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
             ++   VV +     ++ +     T  I +  L      +    +H+  +V+ 
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR-SIVDH 452

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250

 Score = 58.7 bits (143), Expect = 7e-10
 Identities = 59/229 (25%), Positives = 101/229 (44%), Gaps = 45/229 (19%)

Query: 275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLI---ERFYDPQAGEVLIDGVNLKEFQ 331
           GE I  G +L +P G   AL+G +G+GKST+  ++      Y  + GE+L+DG N+ E  
Sbjct: 15  GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPE-YTVERGEILLDGENILELS 73

Query: 332 LKWIRGKIG--LVSQEPVLFTSSIKDNINYGKDGASIAEIMAAA------ELANAAKFID 383
               R + G  L  Q PV     +         G +IA  +  A           A+F  
Sbjct: 74  P-DERARKGLFLAFQYPV----EVP--------GVTIANFLRLALQAKLGREVGVAEFWT 120

Query: 384 SLPQGLDTM------------VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 431
            + + L+ +             G      SGG+K+R  I + ++ +P   +LDE  S LD
Sbjct: 121 KVKKALELLDWDESYLSRYLNEG-----FSGGEKKRNEILQLLVLEPTYAVLDETDSGLD 175

Query: 432 AESERVVQEALDKIMI-NRTTVIVAH--RLSTVRNADLIAVIHQGKLVE 477
            ++ +VV   ++ +   N   +++ H  R+      D + V+  G++V 
Sbjct: 176 IDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVA 224

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267

 Score = 58.3 bits (142), Expect = 1e-09
 Identities = 55/227 (24%), Positives = 97/227 (42%), Gaps = 37/227 (16%)

Query: 275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLI---ERFYDPQAGEVLIDGVNLKEFQ 331
            + I  G SL +  G   A++G +GSGKST+ + +   E  Y+   G V   G +L    
Sbjct: 32  DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRED-YEVTGGTVEFKGKDLLALS 90

Query: 332 LKWIRGKIGL------------VSQEPVLFTSSIKDNINYGKDGASIAEIM-----AAAE 374
               R   G+            VS +  L T+        G++     +         A 
Sbjct: 91  P-EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIAL 149

Query: 375 LANAAKFID-SLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 433
           L      +  S+  G            SGG+K+R  I +  + +P + +LDE+ S LD +
Sbjct: 150 LKMPEDLLTRSVNVG-----------FSGGEKKRNDILQMAVLEPELCILDESDSGLDID 198

Query: 434 SERVVQEALDKIMI-NRTTVIVAH--RLSTVRNADLIAVIHQGKLVE 477
           + +VV + ++ +    R+ +IV H  R+      D + V++QG++V+
Sbjct: 199 ALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK 245

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339

 Score = 52.7 bits (126), Expect = 9e-08
 Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 12/100 (12%)

Query: 380 KFIDSLPQGLDTMVGEHG-----TQLSGGQKQ------RIAIARAILKDPRILLLDEATS 428
             + +    +   V   G     T LSGG++       R+A++  +  +  +L+LDE T 
Sbjct: 224 VVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTP 283

Query: 429 ALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLI 467
            LD E  R +   +++ +      ++V+H       AD +
Sbjct: 284 YLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV 323

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 7/77 (9%)

Query: 398 TQLSGGQKQRIAIA------RAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRT 450
           T LSGG++  + +A        +  +  +L+LDE T  LD E  R +   +++ +     
Sbjct: 56  TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQ 115

Query: 451 TVIVAHRLSTVRNADLI 467
            ++V+H       AD +
Sbjct: 116 VILVSHDEELKDAADHV 132

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371

 Score = 44.8 bits (106), Expect = 4e-05
 Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 399 QLSGGQKQRIAIARAI-------LKDPRILLLDEATSALDAESERVVQEALDKIMINRTT 451
            LSGG++  +A++  +             ++LDE T  LD      + E   K+      
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339

Query: 452 VIVAHRLSTVRNADLIAVIHQGK 474
           +I+ H       AD+I  + +  
Sbjct: 340 IIITHHRELEDVADVIINVKKDG 362

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	478
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	100.0
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	100.0
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	100.0
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	100.0
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	100.0
2ghi_A	260	Transport protein; multidrug resistance protein, M	100.0
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	100.0
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	100.0
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	100.0
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	100.0
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	100.0
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	100.0
1ji0_A	240	ABC transporter; ATP binding protein, structural g	100.0
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	100.0
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	100.0
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	100.0
1g6h_A	257	High-affinity branched-chain amino acid transport	100.0
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	100.0
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	100.0
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	100.0
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	100.0
1b0u_A	262	Histidine permease; ABC transporter, transport pro	100.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	100.0
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	100.0
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	100.0
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	100.0
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	100.0
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	100.0
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	100.0
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	100.0
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	100.0
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	100.0
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	100.0
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	100.0
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	100.0
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	100.0
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	100.0
1sgw_A	214	Putative ABC transporter; structural genomics, P p	100.0
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	100.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	100.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	100.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	100.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	100.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	100.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	100.0
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	100.0
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	100.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	100.0
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	100.0
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	100.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	100.0
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	100.0
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.98
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.97
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.97
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.97
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.97
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.97
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.96
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.95
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.94
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.94
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.93
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.93
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.93
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.92
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.91
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.9
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.89
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.89
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.88
2og2_A	359	Putative signal recognition particle receptor; nuc	99.88
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.87
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.86
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.86
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	99.85
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.85
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.85
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.85
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.85
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.84
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.83
2ewv_A	372	Twitching motility protein PILT; pilus retraction	99.82
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.82
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.81
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	99.8
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.8
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.8
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.8
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.79
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.79
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.79
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.79
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.79
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.79
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.78
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.78
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.77
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.76
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.76
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.75
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.75
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.74
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.74
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.73
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.72
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.72
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	99.72
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.71
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.71
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.7
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.67
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.66
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.66
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.66
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.63
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	99.63
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	99.61
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.57
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	99.56
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.53
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.49
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.49
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	99.49
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	99.49
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.48
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	99.48
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.48
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.47
1p9r_A	418	General secretion pathway protein E; bacterial typ	99.46
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.45
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	99.44
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.4
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.38
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.35
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.27
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.24
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	99.24
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.22
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.19
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	99.18
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	99.18
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	99.17
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	99.16
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	99.15
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.11
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	99.1
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	99.09
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	99.07
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	99.07
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	99.05
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.04
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	99.04
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	99.02
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.01
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.95
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	98.94
2r6a_A	454	DNAB helicase, replicative helicase; replication,	98.93
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	98.9
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.88
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.81
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.8
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.79
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.78
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.76
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.65
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.63
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.63
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.61
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.61
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.59
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.58
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.57
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.57
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	98.51
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.5
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.49
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.4
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	98.38
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	98.37
3ice_A	422	Transcription termination factor RHO; transcriptio	98.29
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.29
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.29
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	98.25
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.22
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.21
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.21
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.19
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.18
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.18
2z43_A	324	DNA repair and recombination protein RADA; archaea	98.12
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.11
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.98
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.94
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.93
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	97.92
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.9
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.87
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.87
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.84
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	97.82
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	97.82
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.8
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.8
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.79
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.78
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.77
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	97.76
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.75
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.73
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.69
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.68
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.65
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.65
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.65
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.64
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.6
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.56
3bos_A	242	Putative DNA replication factor; P-loop containing	97.54
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.54
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.52
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.51
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.51
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.49
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.46
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.45
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.45
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.42
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.38
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.33
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.28
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.28
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.2
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.2
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.2
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.2
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.16
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	97.14
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.12
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.12
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.11
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	97.08
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.07
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	97.03
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.01
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.01
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.99
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.99
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.98
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	96.97
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.94
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.93
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.91
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.91
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	96.91
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.81
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.81
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.79
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.77
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.76
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.75
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.74
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.73
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.72
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.71
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.7
1xp8_A	366	RECA protein, recombinase A; recombination, radior	96.69
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	96.69
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.68
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.68
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.64
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.64
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.64
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	96.64
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	96.62
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.61
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.6
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.6
3co5_A	143	Putative two-component system transcriptional RES	96.58
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.57
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	96.56
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.54
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.5
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.5
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.47
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.46
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.44
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.43
1via_A	175	Shikimate kinase; structural genomics, transferase	96.41
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.37
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.32
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.32
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	96.32
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	96.31
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.3
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.29
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.27
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.26
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.26
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.25
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	96.18
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.15
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.15
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.15
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.13
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.12
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.11
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.1
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.09
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.08
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.07
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.05
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.04
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.04
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.03
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.03
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.0
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	95.99
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	95.98
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	95.98
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	95.96
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	95.95
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	95.93
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	95.93
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	95.92
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.9
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.87
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	95.85
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	95.85
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	95.85
2ged_A	193	SR-beta, signal recognition particle receptor beta	95.84
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	95.84
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	95.83
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	95.83
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	95.83
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	95.82
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	95.81
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	95.79
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	95.78
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	95.78
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	95.75
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	95.73
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	95.73
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	95.73
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	95.72
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	95.71
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	95.7
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	95.7
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	95.69
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	95.68
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	95.68
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	95.67
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	95.66
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	95.64
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	95.64
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	95.63
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	95.63
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	95.62
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.61
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	95.6
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	95.6
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	95.59
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	95.56
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	95.55
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	95.54
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	95.53
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	95.53
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	95.52
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	95.52
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	95.51
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	95.49
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	95.49
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	95.48
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	95.47
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	95.47
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	95.47
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.44
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	95.42
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	95.41
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	95.41
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.39
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	95.36
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	95.36
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	95.34
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	95.34
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	95.34
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	95.32
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.31
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	95.31
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	95.3
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	95.28
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	95.27
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	95.25
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.25
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	95.25
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	95.25
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	95.25
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	95.21
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	95.2
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	95.2
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	95.2
1nrj_B	218	SR-beta, signal recognition particle receptor beta	95.19
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	95.17
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	95.15
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	95.15
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	95.15
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	95.15
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	95.15
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.14
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	95.13
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	95.12
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.12
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.11
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	95.11
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	95.11
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	95.1
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	95.09
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	95.09
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.08
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	95.08
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	95.08
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	95.07
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	95.07
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	95.06
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	95.06
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	95.03
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	95.02
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	95.02
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	95.01
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	95.01
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	94.99
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	94.98
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	94.97
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	94.96
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	94.96
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	94.95
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	94.95
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	94.93
3llu_A	196	RAS-related GTP-binding protein C; structural geno	94.93
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	94.92
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	94.91
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	94.91
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	94.91
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	94.9
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	94.9
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	94.88
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	94.87
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	94.86
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	94.86
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	94.85
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	94.84
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	94.83
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	94.82
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	94.81
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	94.81
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	94.79
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	94.79
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	94.79
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	94.78
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	94.78
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	94.76
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	94.76
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	94.76
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	94.75
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	94.75
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	94.75
2fh5_B	214	SR-beta, signal recognition particle receptor beta	94.71
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	94.7
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	94.6
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	94.55
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	94.52
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	94.51
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	94.51
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	94.47
3l0o_A	427	Transcription termination factor RHO; helicase, RH	94.46
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	94.34
2hf9_A	226	Probable hydrogenase nickel incorporation protein	94.32
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	94.3
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	94.28
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	94.27
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	94.26
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	94.26
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.21
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	94.2
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	94.2
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	94.18
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	94.15
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	94.11
2xxa_A	433	Signal recognition particle protein; protein trans	94.08
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	94.04
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	93.88
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	93.82

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=2e-92  Score=824.28  Aligned_cols=476  Identities=44%  Similarity=0.761  Sum_probs=451.3

Q ss_pred             eehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 048556            2 ACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGW   81 (478)
Q Consensus         2 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (478)
                      +|+.++|+|+..++|.++|+|++++|++||+++ ++|++++|+++|++.+++++...+..++..++.++++++++++++|
T Consensus       158 ~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~-~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~~~~~i~~~i~~~~~~~  236 (1321)
T 4f4c_A          158 TCYLYVAEQMNNRLRREFVKSILRQEISWFDTN-HSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSW  236 (1321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHT-CCTTHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478899999999999999999999999999998 8999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           82 LLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEG  161 (478)
Q Consensus        82 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~  161 (478)
                      .+++++++++|+++++..++.+++++..++.++..++.++.+.|.++|+++||+|++|+.+.++|.+..++..+...+..
T Consensus       237 ~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~  316 (1321)
T 4f4c_A          237 QLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKG  316 (1321)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 048556          162 LAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERK  241 (478)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~  241 (478)
                      ...+...+...++..+..++++|+|++++.+|.+++|++++++.++..+..|+..+...+..++++.++++|++++++.+
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~  396 (1321)
T 4f4c_A          317 LFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRK  396 (1321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            88888888888999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEE
Q 048556          242 PLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL  321 (478)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~  321 (478)
                      |+.+........+....++|+|+||+|+|++++++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.
T Consensus       397 ~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~  476 (1321)
T 4f4c_A          397 PVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKIT  476 (1321)
T ss_dssp             CCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEE
T ss_pred             ccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCccc
Confidence            65443322222333445789999999999876667999999999999999999999999999999999999999999999


Q ss_pred             ECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 048556          322 IDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLS  401 (478)
Q Consensus       322 ~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LS  401 (478)
                      +||+|+++++.+++|++|+||||+|+||++||||||++|.|+++++++++||+.++++++|+.||+|+||.+||+|.+||
T Consensus       477 idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LS  556 (1321)
T 4f4c_A          477 IDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLS  556 (1321)
T ss_dssp             ETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCC
T ss_pred             CCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556          402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK  478 (478)
Q Consensus       402 gGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~  478 (478)
                      ||||||||||||+++||+|||||||||+||+++|+.+.++|+++.+++|+|+||||++++++||+|+||++|+|+|+
T Consensus       557 GGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~  633 (1321)
T 4f4c_A          557 GGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEV  633 (1321)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999974

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=1e-87  Score=728.17  Aligned_cols=472  Identities=28%  Similarity=0.470  Sum_probs=439.4

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556            3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL   82 (478)
Q Consensus         3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (478)
                      +..+.+.++..++|.++|+|++++|+.+|++. ++|++++|+++|++.+++++...+..++..++.++++++++++++|.
T Consensus        86 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~  164 (587)
T 3qf4_A           86 FASYASQNFGADLRRDLFRKVLSFSISNVNRF-HTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVK  164 (587)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678899999999999999999999999998 89999999999999999999999998998888888888899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL  162 (478)
Q Consensus        83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  162 (478)
                      +++++++++|+++++..++.++.++..++.++..+++++.+.|.++|+++||+|++|+.+.++|.+..+++.+...+..+
T Consensus       165 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  244 (587)
T 3qf4_A          165 LSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFS  244 (587)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888999999999999999999999999999999999999999999999999999999998888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556          163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP  242 (478)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~  242 (478)
                      ......++..++..+..++++++|++++.+|.+++|.++++..+...+..|+..+...+..++++..+++|+.++++.++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~  324 (587)
T 3qf4_A          245 LIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKP  324 (587)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            88888888888888888899999999999999999999999999999999999999999999999999999999998766


Q ss_pred             CcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556          243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI  322 (478)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~  322 (478)
                      +.+... .....+...+.|+++||+|+|+++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+
T Consensus       325 ~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i  402 (587)
T 3qf4_A          325 AIEEAD-NALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEV  402 (587)
T ss_dssp             SCCCCT-TCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEE
T ss_pred             ccCCCC-CccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEE
Confidence            433221 111222344689999999999753 468999999999999999999999999999999999999999999999


Q ss_pred             CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 048556          323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSG  402 (478)
Q Consensus       323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg  402 (478)
                      ||+|+.+++.+++|++++||||+|++|++|++||+.++.+..++++++++++.++++++++.+|+|++|.++++|.+|||
T Consensus       403 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSg  482 (587)
T 3qf4_A          403 DELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSG  482 (587)
T ss_dssp             SSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCH
T ss_pred             CCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCH
Confidence            99999999999999999999999999999999999999988899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       403 Gq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      |||||++||||++++|+++|||||||+||+++++.+.+.|++..+++|+|+||||+++++.||||++|++|+++|
T Consensus       483 GqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~  557 (587)
T 3qf4_A          483 GQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAG  557 (587)
T ss_dssp             HHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEE
T ss_pred             HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999999999999999999999888999999999999999999999999999986

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=100.00  E-value=1e-87  Score=727.60  Aligned_cols=472  Identities=33%  Similarity=0.456  Sum_probs=440.0

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556            3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL   82 (478)
Q Consensus         3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (478)
                      +..+.+.++..++|.++|+|++++|+.+|++. ++|++++|+++|++.+++++...+..++..++.++++++++++++|+
T Consensus        84 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~  162 (578)
T 4a82_A           84 LAQWTSNKILYDIRKKLYNHLQALSARFYANN-QVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVK  162 (578)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTS-CHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            45678899999999999999999999999998 89999999999999999999888888888888888888899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL  162 (478)
Q Consensus        83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  162 (478)
                      ++++.++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...+..+
T Consensus       163 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  242 (578)
T 4a82_A          163 LTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTR  242 (578)
T ss_dssp             THHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556          163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP  242 (478)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~  242 (478)
                      ..+....+..++..+..++++++|++++..|.+++|.++++..++..+..|+..+...+..+.++..+++|+.++++.++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~  322 (578)
T 4a82_A          243 WNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDY  322 (578)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            88888888888888888999999999999999999999999999888889999999999999999999999999998766


Q ss_pred             CcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556          243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI  322 (478)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~  322 (478)
                      +..... +..+.+...+.|+++||+|+|+++ ++++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+
T Consensus       323 ~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~  400 (578)
T 4a82_A          323 DIKNGV-GAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILI  400 (578)
T ss_dssp             SSCCCT-TCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEE
T ss_pred             cccCCC-CccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEE
Confidence            533221 111222334679999999999753 357999999999999999999999999999999999999999999999


Q ss_pred             CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 048556          323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSG  402 (478)
Q Consensus       323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg  402 (478)
                      ||+|+.+++.+++|++++||||+|++|++|++||+.++.+..++++++++++.++++++++.+|+|++|.+|++|.+|||
T Consensus       401 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSg  480 (578)
T 4a82_A          401 DGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSG  480 (578)
T ss_dssp             TTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCH
T ss_pred             CCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCH
Confidence            99999999999999999999999999999999999999988899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       403 Gq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      |||||++||||++++|+++|||||||+||+.+++.+.+.+++..+++|+|+||||+++++.||+|++|++|++++
T Consensus       481 Gq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~  555 (578)
T 4a82_A          481 GQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVE  555 (578)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEE
T ss_pred             HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence            999999999999999999999999999999999999999999888899999999999999999999999999986

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=6.6e-89  Score=794.59  Aligned_cols=475  Identities=36%  Similarity=0.597  Sum_probs=425.1

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHcCChhhhhcc-CChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 048556            3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKE-THSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGW   81 (478)
Q Consensus         3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (478)
                      +....+.++..++|.++|+++++.|++||+.. +++|++++|+++|++.+++.+...+..++..++.+++.++++++.+|
T Consensus       817 ~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~  896 (1321)
T 4f4c_A          817 FMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGW  896 (1321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehHHhH
Confidence            45678899999999999999999999999852 27999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           82 LLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEG  161 (478)
Q Consensus        82 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~  161 (478)
                      ++++++++++|++++...++.++.++...+..+..++....+.|+++|+++||+|++|+.+.++|.+..++..+...+..
T Consensus       897 ~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~  976 (1321)
T 4f4c_A          897 QMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEA  976 (1321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999888877777766666667777778888899999999999999999999999999999999988888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 048556          162 LAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINV--IFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIE  239 (478)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~  239 (478)
                      ...+....+...+..+...+++++|++++..+..+.+.+..+  +.+......++..+...+..+.++..+++|++++++
T Consensus       977 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~ 1056 (1321)
T 4f4c_A          977 FIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLR 1056 (1321)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            888888888888888888888999999998888776654333  222223334666777788899999999999999999


Q ss_pred             cCCCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccE
Q 048556          240 RKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE  319 (478)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~  319 (478)
                      .+++.+... ...+.++..++|+|+||+|+|+++++.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+
T Consensus      1057 ~~~~~~~~~-~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~ 1135 (1321)
T 4f4c_A         1057 KISKIDSLS-LAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGE 1135 (1321)
T ss_dssp             CCCSSCTTC-CCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSE
T ss_pred             CcccCCCcc-CCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCE
Confidence            876544322 1223334457899999999998766668999999999999999999999999999999999999999999


Q ss_pred             EEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCC--CCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCC
Q 048556          320 VLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGK--DGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHG  397 (478)
Q Consensus       320 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~--~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g  397 (478)
                      |++||+|+++++.+++|++|+||||||+||+|||||||++|.  ++++++++++|++.++++++|+++|+||||.+||+|
T Consensus      1136 I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G 1215 (1321)
T 4f4c_A         1136 IFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRG 1215 (1321)
T ss_dssp             EEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTS
T ss_pred             EEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCC
Confidence            999999999999999999999999999999999999999984  568999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          398 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       398 ~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      .+|||||||||||||||+++|+|||||||||+||++||+.|.+.|++..++||+|+||||++++++||||+|||+|+|+|
T Consensus      1216 ~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE 1295 (1321)
T 4f4c_A         1216 TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIE 1295 (1321)
T ss_dssp             CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEE
T ss_pred             cccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999999999989999999999999999999999999999998


Q ss_pred             C
Q 048556          478 K  478 (478)
Q Consensus       478 ~  478 (478)
                      +
T Consensus      1296 ~ 1296 (1321)
T 4f4c_A         1296 K 1296 (1321)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=100.00  E-value=9.3e-86  Score=713.05  Aligned_cols=470  Identities=31%  Similarity=0.515  Sum_probs=437.6

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556            3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL   82 (478)
Q Consensus         3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (478)
                      +..+.+.++..++|.++|+|++++|+.+|++. ++|++++|+++|++.+++++...++.++..++.++++++++++++|+
T Consensus        88 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~  166 (582)
T 3b5x_A           88 CLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQE-STGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQ  166 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            45667899999999999999999999999998 89999999999999999999999999999999999998999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL  162 (478)
Q Consensus        83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  162 (478)
                      +++++++++|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+|++|+.+.++|.+..+++.+...+..+
T Consensus       167 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  246 (582)
T 3b5x_A          167 LSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVS  246 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999888888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556          163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP  242 (478)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~  242 (478)
                      .......+..++..+..++++++|++++.+|.+|+|++++++.++..+..|+..+...+..++++..+++|+.++++.++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~  326 (582)
T 3b5x_A          247 AQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLET  326 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            88888888888888888899999999999999999999999999999999999999999999999999999999998765


Q ss_pred             CcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556          243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI  322 (478)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~  322 (478)
                      +.+..   ..+.+...+.|+++||+|+|+++ ++++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+
T Consensus       327 ~~~~~---~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~  402 (582)
T 3b5x_A          327 ERDNG---KYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICL  402 (582)
T ss_pred             cCCCC---CCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEE
Confidence            43211   11112223579999999999742 257999999999999999999999999999999999999999999999


Q ss_pred             CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 048556          323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGK-DGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLS  401 (478)
Q Consensus       323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~-~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LS  401 (478)
                      ||+|+.+++.+++|++++||||+|.+|++|++||+.++. ++.++++++++++.++++++++.+|+|+||.+|++|.+||
T Consensus       403 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LS  482 (582)
T 3b5x_A          403 DGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLS  482 (582)
T ss_pred             CCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCC
Confidence            999999999999999999999999999999999999987 6778899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       402 gGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      ||||||++||||++++|+++|||||||+||+.+++.+.+.|++..+++|+|+||||+++++.||+|++|++|++++
T Consensus       483 gGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~  558 (582)
T 3b5x_A          483 GGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIE  558 (582)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999999877899999999999999999999999999986

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=4e-87  Score=725.38  Aligned_cols=471  Identities=32%  Similarity=0.556  Sum_probs=439.8

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556            3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL   82 (478)
Q Consensus         3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (478)
                      +..+.+.++..++|.++|+|++++|+.+|++. ++|++++|+++|++.+++++...+..++..++.++++++++++++|+
T Consensus       100 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~  178 (598)
T 3qf4_B          100 IMLTLSQDVVFRLRKELFEKLQRVPVGFFDRT-PHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVI  178 (598)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCTHHHHHS-CHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678899999999999999999999999998 89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL  162 (478)
Q Consensus        83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  162 (478)
                      +++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+
T Consensus       179 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  258 (598)
T 3qf4_B          179 LSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQI  258 (598)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999989999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556          163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP  242 (478)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~  242 (478)
                      ..+....+..++..+..++++++|++++..|.+++|.+++++.+...+..|+..+...+..+.++..+++|+.++++.++
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~  338 (598)
T 3qf4_B          259 FSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEE  338 (598)
T ss_dssp             HTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            88888888888888888899999999999999999999999888888889999999999999999999999999998765


Q ss_pred             CcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556          243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI  322 (478)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~  322 (478)
                      +.+...  ..+.+...+.|+++||+|+|++  ++++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+
T Consensus       339 ~~~~~~--~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~  414 (598)
T 3qf4_B          339 EKDDPD--AVELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILV  414 (598)
T ss_dssp             CCCCSS--CCCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEE
T ss_pred             CCCCCC--CCCCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEE
Confidence            432211  1122233467999999999964  357999999999999999999999999999999999999999999999


Q ss_pred             CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 048556          323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSG  402 (478)
Q Consensus       323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg  402 (478)
                      ||+|+.+++.+++|++++||||+|++|++|++||+.++.+..++++++++++.++++++++.+|+|++|.+|++|.+|||
T Consensus       415 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSg  494 (598)
T 3qf4_B          415 DGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQ  494 (598)
T ss_dssp             TTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCH
T ss_pred             CCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCH
Confidence            99999999999999999999999999999999999999988889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556          403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK  478 (478)
Q Consensus       403 Gq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~  478 (478)
                      |||||++||||++++|+++|||||||+||+.+++.+.+.+++..+++|+|+||||+++++.||+|++|++|+++++
T Consensus       495 Gq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~  570 (598)
T 3qf4_B          495 GQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEM  570 (598)
T ss_dssp             HHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEEC
T ss_pred             HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence            9999999999999999999999999999999999999999998889999999999999999999999999999874

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=100.00  E-value=1.2e-85  Score=712.25  Aligned_cols=470  Identities=33%  Similarity=0.533  Sum_probs=437.5

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556            3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL   82 (478)
Q Consensus         3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (478)
                      +..+.+.++..++|.++|+|++++|+.+|++. ++|++++|+++|++.+++++...+..++..++.+++.++++++++|+
T Consensus        88 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~  166 (582)
T 3b60_A           88 CISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQ  166 (582)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            34567899999999999999999999999998 89999999999999999999999999999999999998899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL  162 (478)
Q Consensus        83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  162 (478)
                      +++++++++|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+|++|+.+.++|.+..+++.+...+..+
T Consensus       167 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  246 (582)
T 3b60_A          167 LSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVS  246 (582)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998888888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556          163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP  242 (478)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~  242 (478)
                      .......+..++..+..++++++|++++.+|.+|+|++++++.++..+..|+..+...+..++++..+++|+.++++.++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~  326 (582)
T 3b60_A          247 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ  326 (582)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            88888888888888888889999999999999999999999999999999999999999999999999999999998765


Q ss_pred             CcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556          243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI  322 (478)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~  322 (478)
                      +.+..   ..+.+...+.|+++||+|+|+++ ++++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+
T Consensus       327 ~~~~~---~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~  402 (582)
T 3b60_A          327 EKDEG---KRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILM  402 (582)
T ss_dssp             SCCCC---CBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEE
T ss_pred             CccCC---CCCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEE
Confidence            43211   11112224579999999999742 257999999999999999999999999999999999999999999999


Q ss_pred             CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 048556          323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGK-DGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLS  401 (478)
Q Consensus       323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~-~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LS  401 (478)
                      ||+|+.+++.+++|++++||||+|.+|++|++||+.++. ++.++++++++++.++++++++.+|+|++|.+|++|.+||
T Consensus       403 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LS  482 (582)
T 3b60_A          403 DGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLS  482 (582)
T ss_dssp             TTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSC
T ss_pred             CCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCC
Confidence            999999999999999999999999999999999999987 6778899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       402 gGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      ||||||++||||++++|+++|||||||+||+.+++.+.+.|+++.+++|+|+||||+++++.||+|++|++|++++
T Consensus       483 gGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~  558 (582)
T 3b60_A          483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVE  558 (582)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999999877899999999999999999999999999986

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=6.7e-85  Score=759.19  Aligned_cols=475  Identities=47%  Similarity=0.834  Sum_probs=443.3

Q ss_pred             eehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 048556            2 ACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGW   81 (478)
Q Consensus         2 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (478)
                      +++.+.+.++..++|.++|+|++++|+.||+++ ++|++++|+++|++.+++.+...+..++..++.+++.++++++++|
T Consensus       130 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~-~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  208 (1284)
T 3g5u_A          130 SFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVH-DVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGW  208 (1284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSC-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            367788999999999999999999999999998 8999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           82 LLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEG  161 (478)
Q Consensus        82 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~  161 (478)
                      ++++++++++|+++++..++.++.++..++.++..++.++.+.|+++|+++||+|++|+.+.++|.+..++..+...+..
T Consensus       209 ~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~~~~~  288 (1284)
T 3g5u_A          209 KLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKA  288 (1284)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 048556          162 LAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERK  241 (478)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~  241 (478)
                      ...+...++..++..+..++++|+|++++..|.+++|.+++++.+......|+..+...+..+.++..+++|++++++.+
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~  368 (1284)
T 3g5u_A          289 ITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNK  368 (1284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            88888888888888899999999999999999999999998877777777899999999999999999999999999876


Q ss_pred             CCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEE
Q 048556          242 PLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL  321 (478)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~  321 (478)
                      ++.+........+....+.|+++||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.
T Consensus       369 ~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~  448 (1284)
T 3g5u_A          369 PSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVS  448 (1284)
T ss_dssp             CCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEE
T ss_pred             CcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence            65432111112223345789999999999864445899999999999999999999999999999999999999999999


Q ss_pred             ECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 048556          322 IDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLS  401 (478)
Q Consensus       322 ~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LS  401 (478)
                      +||+|+.+++.+++|++|+||||+|++|++||+|||.+|.++.++++++++++.++++++++.+|+|+||.+|++|.+||
T Consensus       449 i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS  528 (1284)
T 3g5u_A          449 IDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLS  528 (1284)
T ss_dssp             ETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSC
T ss_pred             ECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccC
Confidence            99999999999999999999999999999999999999998899999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       402 gGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      ||||||++|||||+++|++||||||||+||+++++.+.+.+++..+++|+|+||||+++++.||+|+||++|+++|
T Consensus       529 gGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~  604 (1284)
T 3g5u_A          529 GGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVE  604 (1284)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCC
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999998888999999999999999999999999999986

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=6.9e-79  Score=708.71  Aligned_cols=474  Identities=41%  Similarity=0.692  Sum_probs=433.2

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHcCChhhhhc--cCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048556            3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDK--ETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKG   80 (478)
Q Consensus         3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~--~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (478)
                      +..+.+.++..++|.++|++++++|+.||++  + ++|++++|+++|++.+++.+...+..++..++.+++.+++++.++
T Consensus       772 ~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~-~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~  850 (1284)
T 3g5u_A          772 TFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKN-TTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYG  850 (1284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4567889999999999999999999999994  4 799999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Q 048556           81 WLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHE  160 (478)
Q Consensus        81 ~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~  160 (478)
                      |.+++++++++|++++...+..+++++...+..+..+.....+.|+++|+++||+|++|+.+.++|.+..+...+...+.
T Consensus       851 ~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~  930 (1284)
T 3g5u_A          851 WQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKK  930 (1284)
T ss_dssp             SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988888888888888888888899999999999999999999999999999999999988888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 048556          161 GLAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIER  240 (478)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~  240 (478)
                      ....+....+...+..+..++++|+|++++..|.+++|.++.++.+......++..+...+..+.++..+++|+.++++.
T Consensus       931 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~ 1010 (1284)
T 3g5u_A          931 AHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEK 1010 (1284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            88888888888888888899999999999999999999998887777777777877777777888999999999999987


Q ss_pred             CCCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEE
Q 048556          241 KPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV  320 (478)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i  320 (478)
                      +++..........+....+.|+++||+|+|+++++.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|
T Consensus      1011 ~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I 1090 (1284)
T 3g5u_A         1011 TPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV 1090 (1284)
T ss_dssp             CCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEE
T ss_pred             CCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE
Confidence            76543221111222233568999999999985434579999999999999999999999999999999999999999999


Q ss_pred             EECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCC
Q 048556          321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGT  398 (478)
Q Consensus       321 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~  398 (478)
                      .+||+|+++++.+++|++++||||+|.+|++||+||+.++.+  ..++++++++++.++++++++.+|+||||.+||+|.
T Consensus      1091 ~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~ 1170 (1284)
T 3g5u_A         1091 FLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGT 1170 (1284)
T ss_dssp             ESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSC
T ss_pred             EECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCC
Confidence            999999999999999999999999999999999999999875  368899999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          399 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       399 ~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      +||||||||++|||||+++|++||||||||+||+.+++.+.+.|++..+++|+|+||||+++++.||||+||++|+++|
T Consensus      1171 ~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~ 1249 (1284)
T 3g5u_A         1171 QLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKE 1249 (1284)
T ss_dssp             SSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEE
T ss_pred             ccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999999998888999999999999999999999999999987

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=100.00  E-value=2.6e-65  Score=508.36  Aligned_cols=255  Identities=44%  Similarity=0.654  Sum_probs=229.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHccCCCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCC
Q 048556          220 CISAFAAGQAAAYKLFEAIERKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSG  299 (478)
Q Consensus       220 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sG  299 (478)
                      .+..++++.++++|++++++.+++..... ...+.....+.|+++||+|+|++  +.++|+|+||+|++||++||+||||
T Consensus        14 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sG   90 (306)
T 3nh6_A           14 LVPRGSHMFIDMENMFDLLKEETEVKDLP-GAGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSG   90 (306)
T ss_dssp             -----CCTTCCHHHHHHHHHHHHSCCCCT-TCBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSC
T ss_pred             cchhHHHHHHHHHHHHHHHhCCccccccc-cccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCC
Confidence            35567888899999999998655432211 11112223467999999999974  3579999999999999999999999


Q ss_pred             CChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHH
Q 048556          300 SGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAA  379 (478)
Q Consensus       300 sGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~  379 (478)
                      ||||||+++|+|+|+|++|+|.+||.++.+++..++|++|+||||++.+|++||+|||.++.+..++++++++++.+++.
T Consensus        91 sGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~  170 (306)
T 3nh6_A           91 AGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIH  170 (306)
T ss_dssp             HHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCH
T ss_pred             chHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcH
Confidence            99999999999999999999999999999999999999999999999999999999999999888899999999999999


Q ss_pred             HHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCch
Q 048556          380 KFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLS  459 (478)
Q Consensus       380 ~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~  459 (478)
                      +++..+|+||+|.++++|.+||||||||++|||||+++|++||||||||+||+.+++.|.+.|+++.+++|+|+||||++
T Consensus       171 ~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~  250 (306)
T 3nh6_A          171 DAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS  250 (306)
T ss_dssp             HHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHH
T ss_pred             HHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChH
Confidence            99999999999999999999999999999999999999999999999999999999999999999888899999999999


Q ss_pred             hhhhcCEEEEEeCCEEee
Q 048556          460 TVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       460 ~~~~~d~i~vl~~G~i~~  477 (478)
                      ++..||+|++|++|+|++
T Consensus       251 ~~~~aD~i~vl~~G~iv~  268 (306)
T 3nh6_A          251 TVVNADQILVIKDGCIVE  268 (306)
T ss_dssp             HHHTCSEEEEEETTEEEE
T ss_pred             HHHcCCEEEEEECCEEEE
Confidence            999999999999999986

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=100.00  E-value=1.4e-56  Score=434.07  Aligned_cols=218  Identities=50%  Similarity=0.801  Sum_probs=205.0

Q ss_pred             ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556          259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK  338 (478)
Q Consensus       259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~  338 (478)
                      .+|+++||+|+|++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.
T Consensus         6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~   84 (247)
T 2ff7_A            6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ   84 (247)
T ss_dssp             EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred             CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence            369999999999421 2479999999999999999999999999999999999999999999999999998888888899


Q ss_pred             eEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCC
Q 048556          339 IGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDP  418 (478)
Q Consensus       339 i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~  418 (478)
                      |+||||++.+|+.|++||+.++.+..+.++++++++..++.+++..+|.|+++.+++.+.+||||||||++|||||+++|
T Consensus        85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p  164 (247)
T 2ff7_A           85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP  164 (247)
T ss_dssp             EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred             EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999987656778889999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          419 RILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       419 ~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      +++||||||++||+.+++.+++.|+++.+++|+|+|||+++.++.||++++|++|++++
T Consensus       165 ~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~  223 (247)
T 2ff7_A          165 KILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVE  223 (247)
T ss_dssp             SEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEE
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999998877899999999999988899999999999975

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=100.00  E-value=2.7e-55  Score=428.21  Aligned_cols=218  Identities=47%  Similarity=0.789  Sum_probs=203.2

Q ss_pred             ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556          259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK  338 (478)
Q Consensus       259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~  338 (478)
                      ..|+++||+|+|++.+.+++|+|+||+|++||+++|+||||||||||+++|+|+++| +|+|.++|.++..++...+|+.
T Consensus        16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~   94 (260)
T 2ghi_A           16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI   94 (260)
T ss_dssp             CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred             CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence            359999999999743224699999999999999999999999999999999999987 8999999999988888888999


Q ss_pred             eEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCC
Q 048556          339 IGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDP  418 (478)
Q Consensus       339 i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~  418 (478)
                      |+||||++.+|+.|++||+.++.+..+++++.++++..++.+++..+|+|+++.+++.+.+||||||||++|||||+++|
T Consensus        95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p  174 (260)
T 2ghi_A           95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP  174 (260)
T ss_dssp             EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred             EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999986555677888889999999999999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          419 RILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       419 ~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      +++||||||++||+.+++.+++.|+++.+++|+|+|||+++.++.||+|++|++|++++
T Consensus       175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~  233 (260)
T 2ghi_A          175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVE  233 (260)
T ss_dssp             SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEE
T ss_pred             CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999877899999999999988899999999999975

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=100.00  E-value=4.3e-55  Score=429.12  Aligned_cols=219  Identities=41%  Similarity=0.717  Sum_probs=201.7

Q ss_pred             ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556          259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK  338 (478)
Q Consensus       259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~  338 (478)
                      +.|+++||+|+|++.+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|++
T Consensus        15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~   94 (271)
T 2ixe_A           15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ   94 (271)
T ss_dssp             CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred             ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence            46999999999964212579999999999999999999999999999999999999999999999999988888888889


Q ss_pred             eEEEecCCCCCcccHHHHHhcCCCCCCH-HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556          339 IGLVSQEPVLFTSSIKDNINYGKDGASI-AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD  417 (478)
Q Consensus       339 i~~v~Q~~~lf~~ti~eNl~~~~~~~~~-~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~  417 (478)
                      |+||||++.+|+.|++||+.++.+.... +++.++++..++.++++.+|+|+++.+++.+.+||||||||++|||||+++
T Consensus        95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~  174 (271)
T 2ixe_A           95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRK  174 (271)
T ss_dssp             EEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTC
T ss_pred             EEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcC
Confidence            9999999999999999999998654444 667777888889999999999999999999999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          418 PRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       418 ~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      |++||||||||+||+.+++.+++.|+++.+  ++|+|+|||+++.+..||+|++|++|++++
T Consensus       175 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~  236 (271)
T 2ixe_A          175 PRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCE  236 (271)
T ss_dssp             CSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEE
T ss_pred             CCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999998754  789999999999988899999999999975

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=100.00  E-value=3.8e-56  Score=430.25  Aligned_cols=215  Identities=44%  Similarity=0.761  Sum_probs=201.8

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++|++|+|++  ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|++++
T Consensus         2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~   79 (243)
T 1mv5_A            2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG   79 (243)
T ss_dssp             EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred             EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence            789999999952  257999999999999999999999999999999999999999999999999998877777888999


Q ss_pred             EEecCCCCCcccHHHHHhcC-CCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCC
Q 048556          341 LVSQEPVLFTSSIKDNINYG-KDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR  419 (478)
Q Consensus       341 ~v~Q~~~lf~~ti~eNl~~~-~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~  419 (478)
                      ||||++.+|++|++||+.++ .+..+++++.++++..++.+++..+|.|+++.+++.+.+||||||||++|||||+++|+
T Consensus        80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~  159 (243)
T 1mv5_A           80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK  159 (243)
T ss_dssp             EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred             EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999998 45566778899999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          420 ILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       420 ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      ++||||||++||+.+++.+++.|+++.+++|+|++||+++.++.||+|++|++|++++
T Consensus       160 lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~  217 (243)
T 1mv5_A          160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITG  217 (243)
T ss_dssp             EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECC
T ss_pred             EEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999998777899999999999988899999999999975

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=100.00  E-value=4.4e-53  Score=433.08  Aligned_cols=217  Identities=29%  Similarity=0.523  Sum_probs=204.0

Q ss_pred             CccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhc
Q 048556          258 RGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRG  337 (478)
Q Consensus       258 ~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~  337 (478)
                      .+.|+++||+|+|++. +.++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.+||+++.+++.+.+|+
T Consensus        17 ~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr   94 (390)
T 3gd7_A           17 GGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK   94 (390)
T ss_dssp             SCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHH
T ss_pred             CCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhC
Confidence            3579999999999632 3579999999999999999999999999999999999998 8999999999999999999999


Q ss_pred             ceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556          338 KIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD  417 (478)
Q Consensus       338 ~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~  417 (478)
                      .++||||++.+|+.|++||+.+.. ....++++++++.+++.+++...|.++++.+++.+.+||||||||++|||||+++
T Consensus        95 ~ig~v~Q~~~lf~~tv~enl~~~~-~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~  173 (390)
T 3gd7_A           95 AFGVIPQKVFIFSGTFRKNLDPNA-AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSK  173 (390)
T ss_dssp             TEEEESCCCCCCSEEHHHHHCTTC-CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTT
T ss_pred             CEEEEcCCcccCccCHHHHhhhcc-ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcC
Confidence            999999999999999999998654 3467889999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          418 PRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       418 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      |++||||||||+||+.++..+.+.|++...++|+|+|||+++.+..||||++|++|+|++
T Consensus       174 P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~  233 (390)
T 3gd7_A          174 AKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQ  233 (390)
T ss_dssp             CCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEE
T ss_pred             CCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999998777899999999999888899999999999975

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=100.00  E-value=1.2e-51  Score=395.31  Aligned_cols=203  Identities=26%  Similarity=0.471  Sum_probs=184.2

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      .++++|++|+|++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|             .+
T Consensus         6 ~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i   71 (229)
T 2pze_A            6 EVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI   71 (229)
T ss_dssp             EEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CE
T ss_pred             eEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EE
Confidence            58999999999632 35799999999999999999999999999999999999999999999998             49


Q ss_pred             EEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCC
Q 048556          340 GLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR  419 (478)
Q Consensus       340 ~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~  419 (478)
                      +|+||++.+|++|++||+.++.+ ....+..++++..++.+++..+|.+.++.+++.+.+||||||||++|||||+++|+
T Consensus        72 ~~v~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~  150 (229)
T 2pze_A           72 SFCSQFSWIMPGTIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD  150 (229)
T ss_dssp             EEECSSCCCCSBCHHHHHHTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred             EEEecCCcccCCCHHHHhhccCC-cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999753 23445556677778889999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHH-HHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          420 ILLLDEATSALDAESERVVQEAL-DKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       420 ililDEpts~LD~~~~~~i~~~l-~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      ++||||||++||+.+++.+++.+ ++..+++|+|++||+++.++.||++++|++|++++
T Consensus       151 lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~  209 (229)
T 2pze_A          151 LYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYF  209 (229)
T ss_dssp             EEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEE
T ss_pred             EEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999974 55555789999999999988899999999999875

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=100.00  E-value=3.4e-52  Score=400.49  Aligned_cols=210  Identities=30%  Similarity=0.446  Sum_probs=177.4

Q ss_pred             EEEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh----
Q 048556          261 IELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI----  335 (478)
Q Consensus       261 i~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~----  335 (478)
                      |+++||+|+|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+++..++    
T Consensus         2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   81 (235)
T 3tif_A            2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR   81 (235)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred             EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence            78999999996422 1369999999999999999999999999999999999999999999999999999887654    


Q ss_pred             hcceEEEecCCCCCcc-cHHHHHhcCC-----CCCCHHHHHHHHHHhcHHHHHHhCCCCcccc-ccCCCCCCChHHHHHH
Q 048556          336 RGKIGLVSQEPVLFTS-SIKDNINYGK-----DGASIAEIMAAAELANAAKFIDSLPQGLDTM-VGEHGTQLSGGQKQRI  408 (478)
Q Consensus       336 r~~i~~v~Q~~~lf~~-ti~eNl~~~~-----~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~-~~~~g~~LSgGq~Qrl  408 (478)
                      |+.++||||++.+|+. |++||+.++.     .....++..+     .+.+.++.+  |+... ....+.+||||||||+
T Consensus        82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgGq~QRv  154 (235)
T 3tif_A           82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRK-----RALECLKMA--ELEERFANHKPNQLSGGQQQRV  154 (235)
T ss_dssp             HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHH-----HHHHHHHHT--TCCGGGTTCCGGGSCHHHHHHH
T ss_pred             hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHH-----HHHHHHHHC--CCChhhhhCChhhCCHHHHHHH
Confidence            4569999999999987 9999998742     1122222211     122334433  55543 3677899999999999


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          409 AIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       409 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      +|||||+.+|++|||||||++||+.+++.+++.|+++.+  ++|+|+|||+++..+.||+|++|++|++++
T Consensus       155 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~  225 (235)
T 3tif_A          155 AIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER  225 (235)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEE
T ss_pred             HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999999999999998753  799999999999887799999999999975

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=100.00  E-value=1.8e-51  Score=395.94  Aligned_cols=202  Identities=32%  Similarity=0.528  Sum_probs=183.0

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      |+++|++|+|++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|             .++
T Consensus         4 l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~   69 (237)
T 2cbz_A            4 ITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVA   69 (237)
T ss_dssp             EEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEE
T ss_pred             EEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEE
Confidence            8999999999632 35799999999999999999999999999999999999999999999998             499


Q ss_pred             EEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCE
Q 048556          341 LVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI  420 (478)
Q Consensus       341 ~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~i  420 (478)
                      ||||++.+|..|++||+.++... ..++..++.+..++.+.+..+|.|+++.+++.+.+||||||||++|||||+++|++
T Consensus        70 ~v~Q~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l  148 (237)
T 2cbz_A           70 YVPQQAWIQNDSLRENILFGCQL-EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADI  148 (237)
T ss_dssp             EECSSCCCCSEEHHHHHHTTSCC-CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred             EEcCCCcCCCcCHHHHhhCcccc-CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence            99999999988999999997642 33455666777777788888999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHH---HhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          421 LLLDEATSALDAESERVVQEALD---KIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       421 lilDEpts~LD~~~~~~i~~~l~---~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      +||||||++||+.+++.+++.|.   +..+++|+|+|||+++.+..||++++|++|++++
T Consensus       149 llLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~  208 (237)
T 2cbz_A          149 YLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISE  208 (237)
T ss_dssp             EEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEE
T ss_pred             EEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEE
Confidence            99999999999999999999994   3445789999999999988899999999999975

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=8.9e-51  Score=391.88  Aligned_cols=209  Identities=25%  Similarity=0.420  Sum_probs=180.1

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh-hcc
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI-RGK  338 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~  338 (478)
                      -++++|++|+|++   +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+..++ ++.
T Consensus         6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~   82 (240)
T 1ji0_A            6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG   82 (240)
T ss_dssp             EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred             eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence            3899999999963   479999999999999999999999999999999999999999999999999988776654 456


Q ss_pred             eEEEecCCCCCcc-cHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556          339 IGLVSQEPVLFTS-SIKDNINYGK-DGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK  416 (478)
Q Consensus       339 i~~v~Q~~~lf~~-ti~eNl~~~~-~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~  416 (478)
                      ++|+||++.+|++ |++||+.++. +....++..+.     +.+.++.++ |++...+..+.+||||||||++|||||+.
T Consensus        83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~  156 (240)
T 1ji0_A           83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRD-----LEWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMS  156 (240)
T ss_dssp             EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHH-----HHHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred             EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHH-----HHHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence            9999999999987 9999999864 22222232222     234455554 46667778889999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEee
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVR-NADLIAVIHQGKLVE  477 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~  477 (478)
                      +|+++||||||++||+.+++.+++.|+++. +++|+|++||+++.+. .||++++|++|++++
T Consensus       157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~  219 (240)
T 1ji0_A          157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVL  219 (240)
T ss_dssp             CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred             CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999998875 5789999999998765 499999999999874

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=100.00  E-value=9.8e-51  Score=410.59  Aligned_cols=212  Identities=33%  Similarity=0.535  Sum_probs=181.5

Q ss_pred             cEEEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHH---h
Q 048556          260 DIELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW---I  335 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~---~  335 (478)
                      -|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++..++.++   +
T Consensus        24 mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~  103 (366)
T 3tui_C           24 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA  103 (366)
T ss_dssp             CEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHH
T ss_pred             eEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence            599999999996421 246999999999999999999999999999999999999999999999999999988665   4


Q ss_pred             hcceEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048556          336 RGKIGLVSQEPVLFTS-SIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR  412 (478)
Q Consensus       336 r~~i~~v~Q~~~lf~~-ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lAR  412 (478)
                      |+.|+||||++.+|+. |++||+.++..  ..+.++..+.     +.+.++.+  |+.........+||||||||++|||
T Consensus       104 r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~-----v~~lL~~v--gL~~~~~~~~~~LSGGqkQRVaIAr  176 (366)
T 3tui_C          104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR-----VTELLSLV--GLGDKHDSYPSNLSGGQKQRVAIAR  176 (366)
T ss_dssp             HTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHH-----HHHHHHHH--TCGGGTTCCTTTSCHHHHHHHHHHH
T ss_pred             hCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHH
Confidence            7889999999999986 99999998631  1233332221     12233333  6666777888999999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEeeC
Q 048556          413 AILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVEK  478 (478)
Q Consensus       413 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~  478 (478)
                      ||+.+|++||||||||+||+.+++.+++.|+++.  .+.|+|+|||+++.+.. ||||++|++|++++.
T Consensus       177 AL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~  245 (366)
T 3tui_C          177 ALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ  245 (366)
T ss_dssp             HTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEC
T ss_pred             HHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence            9999999999999999999999999999999875  37899999999999876 999999999999863

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=100.00  E-value=6.1e-51  Score=399.82  Aligned_cols=209  Identities=25%  Similarity=0.477  Sum_probs=179.2

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecC--CCCHHHhhc
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLK--EFQLKWIRG  337 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~--~~~~~~~r~  337 (478)
                      -|+++||+|+|++.  .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.  ..+...+|+
T Consensus         7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~   84 (275)
T 3gfo_A            7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE   84 (275)
T ss_dssp             EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred             EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence            48999999999642  46999999999999999999999999999999999999999999999999984  334456788


Q ss_pred             ceEEEecCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556          338 KIGLVSQEP--VLFTSSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA  413 (478)
Q Consensus       338 ~i~~v~Q~~--~lf~~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa  413 (478)
                      .|+||||+|  .+|..|++||+.++..  ..+.++..+.     +.+.++.+  |++........+||||||||++||||
T Consensus        85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~iAra  157 (275)
T 3gfo_A           85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKR-----VDNALKRT--GIEHLKDKPTHCLSFGQKKRVAIAGV  157 (275)
T ss_dssp             SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHH-----HHHHHHHT--TCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred             cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchhhcCCcccCCHHHHHHHHHHHH
Confidence            999999997  4777899999998632  2233333222     23344444  67777778889999999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          414 ILKDPRILLLDEATSALDAESERVVQEALDKIM-I-NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |+.+|++||||||||+||+.+++.+++.|+++. + ++|+|+|||+++.+.. ||||++|++|++++
T Consensus       158 L~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~  224 (275)
T 3gfo_A          158 LVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVIL  224 (275)
T ss_dssp             HTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEE
T ss_pred             HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999999998875 3 7899999999999876 99999999999975

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=100.00  E-value=2.9e-50  Score=384.37  Aligned_cols=207  Identities=29%  Similarity=0.424  Sum_probs=177.9

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHH---hh-
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW---IR-  336 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~---~r-  336 (478)
                      ++++|++++|++   +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+..+   +| 
T Consensus         5 l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~   81 (224)
T 2pcj_A            5 LRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN   81 (224)
T ss_dssp             EEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred             EEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence            899999999963   57999999999999999999999999999999999999999999999999998876543   33 


Q ss_pred             cceEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556          337 GKIGLVSQEPVLFTS-SIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA  413 (478)
Q Consensus       337 ~~i~~v~Q~~~lf~~-ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa  413 (478)
                      +.++||||++.+|+. |++||+.++..  ....++..     ..+.+.++.+  |++........+||||||||++||||
T Consensus        82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lara  154 (224)
T 2pcj_A           82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAK-----ERGEYLLSEL--GLGDKLSRKPYELSGGEQQRVAIARA  154 (224)
T ss_dssp             HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHH-----HHHHHHHHHT--TCTTCTTCCGGGSCHHHHHHHHHHHH
T ss_pred             CcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHH-----HHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence            679999999999875 99999987531  11212111     1233455555  66666777889999999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          414 ILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      |+.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.++.||++++|++|++++
T Consensus       155 l~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~  219 (224)
T 2pcj_A          155 LANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVG  219 (224)
T ss_dssp             TTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEE
T ss_pred             HHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999999998875 4789999999999887799999999999975

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=100.00  E-value=1.3e-49  Score=387.54  Aligned_cols=208  Identities=23%  Similarity=0.401  Sum_probs=180.3

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH-HHhhcc
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL-KWIRGK  338 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~  338 (478)
                      -++++|++|+|++   +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+. +.+|+.
T Consensus         7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~   83 (257)
T 1g6h_A            7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG   83 (257)
T ss_dssp             EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred             EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence            3899999999953   479999999999999999999999999999999999999999999999999987764 345778


Q ss_pred             eEEEecCCCCCcc-cHHHHHhcCCCC--C-------------CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 048556          339 IGLVSQEPVLFTS-SIKDNINYGKDG--A-------------SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSG  402 (478)
Q Consensus       339 i~~v~Q~~~lf~~-ti~eNl~~~~~~--~-------------~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg  402 (478)
                      ++||||++.+|+. |++||+.++...  .             ..++.     ...+.+.++.+  |++........+|||
T Consensus        84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSg  156 (257)
T 1g6h_A           84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM-----VEKAFKILEFL--KLSHLYDRKAGELSG  156 (257)
T ss_dssp             EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHH-----HHHHHHHHHHT--TCGGGTTSBGGGSCH
T ss_pred             EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHH-----HHHHHHHHHHc--CCchhhCCCchhCCH
Confidence            9999999999875 999999986422  1             11111     12234566666  788788888999999


Q ss_pred             HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       403 Gq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |||||++|||||+.+|++|||||||++||+.+++.+.+.|+++. +++|+|+|||+++.+.. ||++++|++|++++
T Consensus       157 GqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~  233 (257)
T 1g6h_A          157 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA  233 (257)
T ss_dssp             HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999998875 47899999999998765 99999999999875

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=100.00  E-value=2e-49  Score=386.71  Aligned_cols=208  Identities=33%  Similarity=0.528  Sum_probs=178.5

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecC--CCCHHHhhc
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLK--EFQLKWIRG  337 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~--~~~~~~~r~  337 (478)
                      -|+++|++|+|++   +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.  ..+...+|+
T Consensus        24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~  100 (263)
T 2olj_A           24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE  100 (263)
T ss_dssp             SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred             eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence            4999999999953   47999999999999999999999999999999999999999999999999985  334456788


Q ss_pred             ceEEEecCCCCCcc-cHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556          338 KIGLVSQEPVLFTS-SIKDNINYGK---DGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA  413 (478)
Q Consensus       338 ~i~~v~Q~~~lf~~-ti~eNl~~~~---~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa  413 (478)
                      .++||||++.+|+. |++||+.++.   ...+.++..     ..+.+.++.+  |++........+||||||||++||||
T Consensus       101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~lAra  173 (263)
T 2olj_A          101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAE-----AKAMELLDKV--GLKDKAHAYPDSLSGGQAQRVAIARA  173 (263)
T ss_dssp             HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHH-----HHHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred             cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHC--CCchHhcCChhhCCHHHHHHHHHHHH
Confidence            89999999999987 9999998852   112222211     1223455555  67667778889999999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          414 ILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |+.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus       174 L~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~  239 (263)
T 2olj_A          174 LAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIE  239 (263)
T ss_dssp             HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred             HHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999999998875 47899999999999875 99999999999975

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=100.00  E-value=1e-49  Score=389.82  Aligned_cols=208  Identities=29%  Similarity=0.417  Sum_probs=178.1

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      -++++|++|.|++   +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++..++.+++++.+
T Consensus        11 ~l~~~~l~~~~~~---~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i   87 (266)
T 4g1u_C           11 LLEASHLHYHVQQ---QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR   87 (266)
T ss_dssp             EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred             eEEEEeEEEEeCC---eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence            4899999999963   5799999999999999999999999999999999999999999999999999999998899999


Q ss_pred             EEEecCCCC-CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC--
Q 048556          340 GLVSQEPVL-FTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK--  416 (478)
Q Consensus       340 ~~v~Q~~~l-f~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~--  416 (478)
                      +|++|++.+ |..|++||+.++.......+..+.     +.+.++.+  |+.........+||||||||++|||||+.  
T Consensus        88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~  160 (266)
T 4g1u_C           88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQA-----LQQVMAQT--DCLALAQRDYRVLSGGEQQRVQLARVLAQLW  160 (266)
T ss_dssp             EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHH-----HHHHHHHT--TCSTTTTSBGGGCCHHHHHHHHHHHHHHHTC
T ss_pred             EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHH-----HHHHHHHc--CChhHhcCCcccCCHHHHHHHHHHHHHhccc
Confidence            999999987 456999999987532221111111     12233333  45555566678999999999999999999  


Q ss_pred             ----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          417 ----DPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       417 ----~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                          +|++||||||||+||+.+++.+.+.|+++.+  ++|+|+|||+++.+.. ||||++|++|++++
T Consensus       161 ~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~  228 (266)
T 4g1u_C          161 QPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVA  228 (266)
T ss_dssp             CSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred             ccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE
Confidence                9999999999999999999999999998753  4699999999999875 99999999999975

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=3.2e-49  Score=384.05  Aligned_cols=208  Identities=28%  Similarity=0.448  Sum_probs=177.9

Q ss_pred             ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556          259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK  338 (478)
Q Consensus       259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~  338 (478)
                      +.|+++||+++|++   +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ....+|+.
T Consensus        14 ~~l~i~~l~~~y~~---~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~   89 (256)
T 1vpl_A           14 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL   89 (256)
T ss_dssp             CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred             CeEEEEEEEEEECC---EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence            35999999999952   579999999999999999999999999999999999999999999999999876 45667889


Q ss_pred             eEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556          339 IGLVSQEPVLFTS-SIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL  415 (478)
Q Consensus       339 i~~v~Q~~~lf~~-ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall  415 (478)
                      ++||||++.+|++ |++||+.++..  ....++..+     .+.+.++.+  |++........+||||||||++|||||+
T Consensus        90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAraL~  162 (256)
T 1vpl_A           90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEE-----MVERATEIA--GLGEKIKDRVSTYSKGMVRKLLIARALM  162 (256)
T ss_dssp             EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHH-----HHHHHHHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred             EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHH-----HHHHHHHHC--CCchHhcCChhhCCHHHHHHHHHHHHHH
Confidence            9999999999887 99999987531  122222111     122333333  5666667778899999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          416 KDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      .+|+++||||||++||+.+++.+++.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus       163 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~  226 (256)
T 1vpl_A          163 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVE  226 (256)
T ss_dssp             TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEE
T ss_pred             cCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEE
Confidence            9999999999999999999999999998875 47899999999999877 99999999999874

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=100.00  E-value=3.4e-49  Score=399.08  Aligned_cols=208  Identities=31%  Similarity=0.530  Sum_probs=175.2

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCC--CCHHHhhc
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE--FQLKWIRG  337 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~--~~~~~~r~  337 (478)
                      .|+++|++++|++   .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.+  .+....++
T Consensus         4 ~l~i~~ls~~y~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r   80 (359)
T 3fvq_A            4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER   80 (359)
T ss_dssp             CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred             EEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence            4899999999953   579999999999999999999999999999999999999999999999999832  12234467


Q ss_pred             ceEEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 048556          338 KIGLVSQEPVLFTS-SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI  414 (478)
Q Consensus       338 ~i~~v~Q~~~lf~~-ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal  414 (478)
                      .|+||+|++.+|+. |++||+.++...  ...++..+.     +.+.++.+  |++........+||||||||++|||||
T Consensus        81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~-----v~~~l~~~--gL~~~~~r~~~~LSGGq~QRValArAL  153 (359)
T 3fvq_A           81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQR-----IEAMLELT--GISELAGRYPHELSGGQQQRAALARAL  153 (359)
T ss_dssp             CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHH-----HHHHHHHH--TCGGGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHH-----HHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHH
Confidence            89999999999986 999999997532  122222211     12233333  667777788899999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          415 LKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +.+|++||||||||+||+.++..+.+.+.+..  .+.|+|+|||+++.+.. ||||++|++|++++
T Consensus       154 ~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~  219 (359)
T 3fvq_A          154 APDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQ  219 (359)
T ss_dssp             TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEE
T ss_pred             HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEE
Confidence            99999999999999999999999998776653  47899999999998766 99999999999975

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=100.00  E-value=7e-49  Score=383.28  Aligned_cols=208  Identities=31%  Similarity=0.527  Sum_probs=176.4

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCC----------
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE----------  329 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~----------  329 (478)
                      -++++|++++|++   .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..          
T Consensus         6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~   82 (262)
T 1b0u_A            6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV   82 (262)
T ss_dssp             CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred             eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence            3899999999953   479999999999999999999999999999999999999999999999999862          


Q ss_pred             CCH---HHhhcceEEEecCCCCCcc-cHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCcccc-ccCCCCCCC
Q 048556          330 FQL---KWIRGKIGLVSQEPVLFTS-SIKDNINYGK---DGASIAEIMAAAELANAAKFIDSLPQGLDTM-VGEHGTQLS  401 (478)
Q Consensus       330 ~~~---~~~r~~i~~v~Q~~~lf~~-ti~eNl~~~~---~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~-~~~~g~~LS  401 (478)
                      ++.   ..+|+.++||||++.+|+. |++||+.++.   .....++..     ..+.+.++.+  |++.. ......+||
T Consensus        83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~L~~~~~~~~~~~LS  155 (262)
T 1b0u_A           83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDAR-----ERALKYLAKV--GIDERAQGKYPVHLS  155 (262)
T ss_dssp             SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHH-----HHHHHHHHHT--TCCHHHHTSCGGGSC
T ss_pred             cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHH-----HHHHHHHHHc--CCCchhhcCCcccCC
Confidence            333   3467889999999999987 9999998842   112222211     1123445555  66666 677788999


Q ss_pred             hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       402 gGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++
T Consensus       156 gGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~  233 (262)
T 1b0u_A          156 GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE  233 (262)
T ss_dssp             HHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999999999999999999998875 47899999999999875 99999999999975

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=100.00  E-value=3.9e-49  Score=401.28  Aligned_cols=206  Identities=27%  Similarity=0.469  Sum_probs=179.5

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      .|+++||+++|++   .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+..  ++.|
T Consensus         3 ~l~~~~l~~~yg~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i   77 (381)
T 3rlf_A            3 SVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV   77 (381)
T ss_dssp             CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred             EEEEEeEEEEECC---EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence            4899999999963   5799999999999999999999999999999999999999999999999999887765  4679


Q ss_pred             EEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556          340 GLVSQEPVLFTS-SIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK  416 (478)
Q Consensus       340 ~~v~Q~~~lf~~-ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~  416 (478)
                      +||+|++.+|+. |++||+.++..  ..+.++..+.     +.+.++.+  |++........+||||||||++|||||+.
T Consensus        78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~-----v~~~l~~~--~L~~~~~r~p~~LSGGqrQRVaiArAL~~  150 (381)
T 3rlf_A           78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR-----VNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVA  150 (381)
T ss_dssp             EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHH-----HHHHHHHT--TCGGGTTCCGGGSCHHHHHHHHHHHHHHH
T ss_pred             EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchhhcCChhHCCHHHHHHHHHHHHHHc
Confidence            999999999987 99999998632  1233333221     23444444  67777788889999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +|++||||||||+||+.++..+.+.|+++.+  +.|+|+|||+++.+.. ||||++|++|++++
T Consensus       151 ~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~  214 (381)
T 3rlf_A          151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ  214 (381)
T ss_dssp             CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred             CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999998753  7899999999998766 99999999999975

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=100.00  E-value=1.3e-48  Score=382.42  Aligned_cols=203  Identities=31%  Similarity=0.536  Sum_probs=172.8

Q ss_pred             EEEEeEEEECCCCCC--CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556          261 IELKDIYFSYPSRPG--EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK  338 (478)
Q Consensus       261 i~~~~v~~~y~~~~~--~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~  338 (478)
                      ++++|++|+|+....  +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...   .+|+.
T Consensus         3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~   79 (266)
T 2yz2_A            3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN   79 (266)
T ss_dssp             EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred             EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence            789999999962111  4699999999999999999999999999999999999999999999999998643   67889


Q ss_pred             eEEEecCC--CCCcccHHHHHhcCCCC-C----CHHHHHHHHHHhcHHHHHHhCCCCcc--ccccCCCCCCChHHHHHHH
Q 048556          339 IGLVSQEP--VLFTSSIKDNINYGKDG-A----SIAEIMAAAELANAAKFIDSLPQGLD--TMVGEHGTQLSGGQKQRIA  409 (478)
Q Consensus       339 i~~v~Q~~--~lf~~ti~eNl~~~~~~-~----~~~~~~~a~~~~~~~~~i~~lp~g~~--t~~~~~g~~LSgGq~Qrl~  409 (478)
                      ++||||++  .++..|++||+.++... .    ..+++.++++..           |++  ........+||||||||++
T Consensus        80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~~~LSgGq~qRv~  148 (266)
T 2yz2_A           80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFV-----------GLDFDSFKDRVPFFLSGGEKRRVA  148 (266)
T ss_dssp             EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHT-----------TCCHHHHTTCCGGGSCHHHHHHHH
T ss_pred             EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHc-----------CcCCcccccCChhhCCHHHHHHHH
Confidence            99999996  45677999999987422 1    123344444444           444  4455566899999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          410 IARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       410 lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |||||+.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus       149 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~  218 (266)
T 2yz2_A          149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVF  218 (266)
T ss_dssp             HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEE
T ss_pred             HHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999874 57899999999999876 99999999999874

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=100.00  E-value=5.9e-49  Score=386.83  Aligned_cols=207  Identities=24%  Similarity=0.355  Sum_probs=177.3

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecC--CCCHHHhhc
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLK--EFQLKWIRG  337 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~--~~~~~~~r~  337 (478)
                      -++++|++|+|++   +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.  ..+...+|+
T Consensus        21 ~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   97 (279)
T 2ihy_A           21 LIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ   97 (279)
T ss_dssp             EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred             eEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence            5999999999963   47999999999999999999999999999999999999999999999999987  777777889


Q ss_pred             ceEEEecCCCC-Ccc--cHHHHHhcCCCC-------CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 048556          338 KIGLVSQEPVL-FTS--SIKDNINYGKDG-------ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQR  407 (478)
Q Consensus       338 ~i~~v~Q~~~l-f~~--ti~eNl~~~~~~-------~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qr  407 (478)
                      .++||||++.+ |..  |++||+.++...       ...+.      ...+.+.++.+  |++........+||||||||
T Consensus        98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~--gl~~~~~~~~~~LSgGqkqR  169 (279)
T 2ihy_A           98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI------RNEAHQLLKLV--GMSAKAQQYIGYLSTGEKQR  169 (279)
T ss_dssp             TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHH------HHHHHHHHHHT--TCGGGTTSBGGGSCHHHHHH
T ss_pred             cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHH------HHHHHHHHHHc--CChhHhcCChhhCCHHHHHH
Confidence            99999999864 544  999999986421       11111      11223445555  67777778889999999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeE--EEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          408 IAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI-NRTT--VIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       408 l~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~--i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ++|||||+.+|++|||||||++||+.+++.+++.|+++.+ ++|+  |+|||+++.+.. ||+|++|++|++++
T Consensus       170 v~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~  243 (279)
T 2ihy_A          170 VMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQ  243 (279)
T ss_dssp             HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEE
T ss_pred             HHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999988753 7899  999999998755 99999999999875

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=100.00  E-value=1.2e-48  Score=386.36  Aligned_cols=199  Identities=26%  Similarity=0.459  Sum_probs=166.8

Q ss_pred             ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556          259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK  338 (478)
Q Consensus       259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~  338 (478)
                      +.++++|++|.|     +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|             +
T Consensus        39 ~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~  100 (290)
T 2bbs_A           39 DSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R  100 (290)
T ss_dssp             -----------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------C
T ss_pred             ceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------E
Confidence            469999999864     3699999999999999999999999999999999999999999999987             4


Q ss_pred             eEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCC
Q 048556          339 IGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDP  418 (478)
Q Consensus       339 i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~  418 (478)
                      ++|+||++.+|++|++||+. +.. ....+..++++..++.+++..+|.++++.+++.+.+||||||||++|||||+++|
T Consensus       101 i~~v~Q~~~l~~~tv~enl~-~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p  178 (290)
T 2bbs_A          101 ISFCSQNSWIMPGTIKENII-GVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA  178 (290)
T ss_dssp             EEEECSSCCCCSSBHHHHHH-TTC-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCC
T ss_pred             EEEEeCCCccCcccHHHHhh-Ccc-cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCC
Confidence            99999999999999999998 542 2344455667777888899999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHH-HHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          419 RILLLDEATSALDAESERVVQEAL-DKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       419 ~ililDEpts~LD~~~~~~i~~~l-~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      +++||||||++||+.+++.+++.+ +++.+++|+|++||+++.++.||++++|++|++++
T Consensus       179 ~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~  238 (290)
T 2bbs_A          179 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYF  238 (290)
T ss_dssp             SEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEE
T ss_pred             CEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEE
Confidence            999999999999999999999974 45455789999999999988899999999999874

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=100.00  E-value=3.6e-48  Score=392.64  Aligned_cols=205  Identities=31%  Similarity=0.524  Sum_probs=177.1

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++|++++|++   .++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.+||.++...+..  ++.++
T Consensus         4 l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig   78 (359)
T 2yyz_A            4 IRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVG   78 (359)
T ss_dssp             EEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred             EEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEE
Confidence            899999999953   4799999999999999999999999999999999999999999999999999877654  57899


Q ss_pred             EEecCCCCCcc-cHHHHHhcCCCCCC--HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556          341 LVSQEPVLFTS-SIKDNINYGKDGAS--IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD  417 (478)
Q Consensus       341 ~v~Q~~~lf~~-ti~eNl~~~~~~~~--~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~  417 (478)
                      ||||++.+|+. |++||+.++.....  .++..     ..+.+.++.+  |++........+||||||||++|||||+.+
T Consensus        79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~-----~~v~~~l~~~--~L~~~~~r~~~~LSgGq~QRvalArAL~~~  151 (359)
T 2yyz_A           79 MVFQNYALYPHMTVFENIAFPLRARRISKDEVE-----KRVVEIARKL--LIDNLLDRKPTQLSGGQQQRVALARALVKQ  151 (359)
T ss_dssp             EECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTT-----HHHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred             EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence            99999999986 99999999753221  11111     1123444544  666677778899999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          418 PRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       418 ~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |++||||||||+||+.+++.+.+.|+++.+  +.|+|+|||+++.+.. ||+|++|++|++++
T Consensus       152 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~  214 (359)
T 2yyz_A          152 PKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQ  214 (359)
T ss_dssp             CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred             CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999988743  7899999999998755 99999999999975

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=100.00  E-value=2.6e-48  Score=374.26  Aligned_cols=202  Identities=30%  Similarity=0.463  Sum_probs=173.7

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++|++++|++     +|+|+||++++ |+++|+||||||||||+|+|+|+++|++|+|.++|.++...+  ..++.++
T Consensus         2 l~~~~l~~~y~~-----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~   73 (240)
T 2onk_A            2 FLKVRAEKRLGN-----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG   73 (240)
T ss_dssp             CEEEEEEEEETT-----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred             EEEEEEEEEeCC-----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence            689999999941     59999999999 999999999999999999999999999999999999987643  3467899


Q ss_pred             EEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCC
Q 048556          341 LVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR  419 (478)
Q Consensus       341 ~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~  419 (478)
                      ||||++.+|+. |++||+.++.......+-     ...+.+.++.+  |++........+||||||||++|||||+.+|+
T Consensus        74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~  146 (240)
T 2onk_A           74 FVPQDYALFPHLSVYRNIAYGLRNVERVER-----DRRVREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPR  146 (240)
T ss_dssp             CCCSSCCCCTTSCHHHHHHTTCTTSCHHHH-----HHHHHHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred             EEcCCCccCCCCcHHHHHHHHHHHcCCchH-----HHHHHHHHHHc--CCHHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence            99999999987 999999997533221110     12234455555  67666777788999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          420 ILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       420 ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ++||||||++||+.+++.+++.|+++.+  ++|+|++||+++.+.. ||++++|++|++++
T Consensus       147 lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~  207 (240)
T 2onk_A          147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVE  207 (240)
T ss_dssp             SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999988743  7899999999998755 99999999999875

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=100.00  E-value=6.6e-48  Score=373.30  Aligned_cols=198  Identities=23%  Similarity=0.352  Sum_probs=174.7

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++|++|+       ++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|.++.+++..++|++++
T Consensus         5 l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~   76 (249)
T 2qi9_C            5 MQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA   76 (249)
T ss_dssp             EEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred             EEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence            789999985       4899999999999999999999999999999999999999 99999999998888888889999


Q ss_pred             EEecCCCCCcc-cHHHHHhcCCC-CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCC
Q 048556          341 LVSQEPVLFTS-SIKDNINYGKD-GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDP  418 (478)
Q Consensus       341 ~v~Q~~~lf~~-ti~eNl~~~~~-~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~  418 (478)
                      |+||++.+|.+ |++||+.++.. ..+.+++.+++         +.+  |++......+.+||||||||++|||||+.+|
T Consensus        77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l---------~~~--~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p  145 (249)
T 2qi9_C           77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVA---------GAL--ALDDKLGRSTNQLSGGEWQRVRLAAVVLQIT  145 (249)
T ss_dssp             EECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHH---------HHT--TCGGGTTSBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred             EECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHH---------HHc--CChhHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence            99999998876 99999998742 12233344333         333  5555666778899999999999999999999


Q ss_pred             C-------EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEee
Q 048556          419 R-------ILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVR-NADLIAVIHQGKLVE  477 (478)
Q Consensus       419 ~-------ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~  477 (478)
                      +       ++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. .||++++|++|++++
T Consensus       146 ~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~  213 (249)
T 2qi9_C          146 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLA  213 (249)
T ss_dssp             TTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred             CcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            9       999999999999999999999999875 5789999999999985 599999999999874

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=100.00  E-value=3.7e-48  Score=391.66  Aligned_cols=208  Identities=31%  Similarity=0.528  Sum_probs=178.0

Q ss_pred             ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556          259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK  338 (478)
Q Consensus       259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~  338 (478)
                      ..|+++|++++|++  +.++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+.  .++.
T Consensus        13 ~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~   88 (355)
T 1z47_A           13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN   88 (355)
T ss_dssp             EEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred             ceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence            35999999999932  2469999999999999999999999999999999999999999999999999987654  3678


Q ss_pred             eEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556          339 IGLVSQEPVLFTS-SIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL  415 (478)
Q Consensus       339 i~~v~Q~~~lf~~-ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall  415 (478)
                      ++||||++.+|+. |++||+.++..  ..+.++..     ..+.+.++.+  |++........+||||||||++|||||+
T Consensus        89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~-----~~v~~~l~~~--gL~~~~~r~~~~LSGGq~QRvalArAL~  161 (355)
T 1z47_A           89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMD-----ARVRELLRFM--RLESYANRFPHELSGGQQQRVALARALA  161 (355)
T ss_dssp             EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHH-----HHHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred             EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence            9999999999986 99999998631  12222221     1123444554  6766777788999999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          416 KDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      .+|++||||||||+||+.+++.+.+.|+++.+  +.|+|+|||+++.+.. ||+|++|++|++++
T Consensus       162 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~  226 (355)
T 1z47_A          162 PRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQ  226 (355)
T ss_dssp             TCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999988753  7899999999998765 99999999999975

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=100.00  E-value=8.2e-49  Score=380.41  Aligned_cols=207  Identities=28%  Similarity=0.462  Sum_probs=168.4

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhcc--CCCCccEEEECCeecCCCCHHHh-hc
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGVNLKEFQLKWI-RG  337 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~--~~~~~G~i~~~g~~~~~~~~~~~-r~  337 (478)
                      ++++||+|+|++   +++|+|+||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|.++...+.... ++
T Consensus         4 l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~   80 (250)
T 2d2e_A            4 LEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK   80 (250)
T ss_dssp             EEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred             EEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence            789999999953   5799999999999999999999999999999999999  89999999999999988876655 45


Q ss_pred             ceEEEecCCCCCcc-cHHHHHhcCCC-----CCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCC-CChHHHHHHH
Q 048556          338 KIGLVSQEPVLFTS-SIKDNINYGKD-----GASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQ-LSGGQKQRIA  409 (478)
Q Consensus       338 ~i~~v~Q~~~lf~~-ti~eNl~~~~~-----~~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~-LSgGq~Qrl~  409 (478)
                      .++|+||++.+|++ |++||+.++..     ....++..+     .+.+.++.+  |++ ........+ ||||||||++
T Consensus        81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~~LSgGqkQrv~  153 (250)
T 2d2e_A           81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWT-----KVKKALELL--DWDESYLSRYLNEGFSGGEKKRNE  153 (250)
T ss_dssp             TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHH-----HHHHHHHHH--TCCGGGGGSBTTCC----HHHHHH
T ss_pred             cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHH-----HHHHHHHHc--CCChhHhcCCcccCCCHHHHHHHH
Confidence            69999999999987 99999987421     011111111     122334433  553 344455566 9999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh--cCEEEEEeCCEEee
Q 048556          410 IARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN--ADLIAVIHQGKLVE  477 (478)
Q Consensus       410 lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~--~d~i~vl~~G~i~~  477 (478)
                      |||||+++|+++|||||||+||+.+++.+.+.|+++. +++|+|+|||+++.+..  ||++++|++|++++
T Consensus       154 iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~  224 (250)
T 2d2e_A          154 ILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVA  224 (250)
T ss_dssp             HHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEE
T ss_pred             HHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999885 47899999999999876  59999999999975

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=100.00  E-value=7.9e-48  Score=391.87  Aligned_cols=206  Identities=28%  Similarity=0.449  Sum_probs=173.1

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      .|+++|++++|++   .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+||+++...+..  ++.+
T Consensus        11 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i   85 (372)
T 1v43_A           11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI   85 (372)
T ss_dssp             CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred             eEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence            3899999999953   4799999999999999999999999999999999999999999999999999877654  5789


Q ss_pred             EEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556          340 GLVSQEPVLFTS-SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK  416 (478)
Q Consensus       340 ~~v~Q~~~lf~~-ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~  416 (478)
                      +||||++.+|+. |++||+.|+...  .+.++..+     .+.+.++.+  |++........+||||||||++|||||+.
T Consensus        86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL~~  158 (372)
T 1v43_A           86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDK-----RVRWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVV  158 (372)
T ss_dssp             EEEEC------CCCHHHHHHTTCC--CCCHHHHHH-----HHHHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred             EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhc
Confidence            999999999986 999999997532  22222221     223445555  67777778889999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +|++||||||||+||+.+++.+.+.|+++.+  +.|+|+|||+++.+.. ||+|++|++|++++
T Consensus       159 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~  222 (372)
T 1v43_A          159 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQ  222 (372)
T ss_dssp             CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred             CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999988753  7899999999998755 99999999999975

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=100.00  E-value=3.8e-48  Score=392.86  Aligned_cols=205  Identities=36%  Similarity=0.527  Sum_probs=177.1

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++|++++|++   .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+||.++.+.+..  ++.++
T Consensus         4 l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig   78 (362)
T 2it1_A            4 IKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVG   78 (362)
T ss_dssp             EEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred             EEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEE
Confidence            899999999953   4799999999999999999999999999999999999999999999999999877654  57899


Q ss_pred             EEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556          341 LVSQEPVLFTS-SIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD  417 (478)
Q Consensus       341 ~v~Q~~~lf~~-ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~  417 (478)
                      ||||++.+|+. |++||+.++..  ....++..+     .+.+.++.+  |++........+||||||||++|||||+.+
T Consensus        79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL~~~  151 (362)
T 2it1_A           79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDK-----KVREVAKML--HIDKLLNRYPWQLSGGQQQRVAIARALVKE  151 (362)
T ss_dssp             EECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHH-----HHHHHHHHT--TCTTCTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred             EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchHhhCChhhCCHHHHHHHHHHHHHHcC
Confidence            99999999986 99999998631  122222211     123445554  666667778899999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          418 PRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       418 ~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |++||||||||+||+.+++.+.+.|+++.+  +.|+|+|||+++.+.. ||+|++|++|++++
T Consensus       152 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~  214 (362)
T 2it1_A          152 PEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQ  214 (362)
T ss_dssp             CSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred             CCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999988753  7899999999998755 99999999999975

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=100.00  E-value=4.6e-48  Score=391.86  Aligned_cols=207  Identities=29%  Similarity=0.441  Sum_probs=176.7

Q ss_pred             EEEEeEEEECCCCCCCc--ccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC---HHHh
Q 048556          261 IELKDIYFSYPSRPGEQ--IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ---LKWI  335 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~--~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~---~~~~  335 (478)
                      ++++|++++|++   .+  +|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.+.+   ....
T Consensus         4 l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~   80 (353)
T 1oxx_K            4 IIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE   80 (353)
T ss_dssp             EEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred             EEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence            899999999953   46  999999999999999999999999999999999999999999999999986521   2234


Q ss_pred             hcceEEEecCCCCCcc-cHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048556          336 RGKIGLVSQEPVLFTS-SIKDNINYGKDGA--SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR  412 (478)
Q Consensus       336 r~~i~~v~Q~~~lf~~-ti~eNl~~~~~~~--~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lAR  412 (478)
                      ++.++||||++.+|+. |++||+.++....  ..++..+     .+.+.++.+  |++........+||||||||++|||
T Consensus        81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~~~~~~LSGGq~QRvalAr  153 (353)
T 1oxx_K           81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK-----RVEEVAKIL--DIHHVLNHFPRELSGAQQQRVALAR  153 (353)
T ss_dssp             GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHH-----HHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred             hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHH
Confidence            7889999999999987 9999999975321  2222211     123445554  6766677778999999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          413 AILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       413 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||+.+|++||||||||+||+.+++.+.+.|+++.+  ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus       154 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~  221 (353)
T 1oxx_K          154 ALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQ  221 (353)
T ss_dssp             HHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred             HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999988743  7899999999998765 99999999999975

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=100.00  E-value=9e-48  Score=388.47  Aligned_cols=200  Identities=31%  Similarity=0.537  Sum_probs=173.4

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++|++++|+   +. +|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+||+++.+.+.  .++.++
T Consensus         2 l~~~~l~~~y~---~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig   75 (348)
T 3d31_A            2 IEIESLSRKWK---NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA   75 (348)
T ss_dssp             EEEEEEEEECS---SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred             EEEEEEEEEEC---CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence            68999999995   24 9999999999999999999999999999999999999999999999999987654  367899


Q ss_pred             EEecCCCCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556          341 LVSQEPVLFTS-SIKDNINYGKD---GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK  416 (478)
Q Consensus       341 ~v~Q~~~lf~~-ti~eNl~~~~~---~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~  416 (478)
                      ||||++.+|+. |++||+.++..   ....+++.         +.++.+  |++........+||||||||++|||||+.
T Consensus        76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~---------~~l~~~--~L~~~~~~~~~~LSgGq~QRvalAraL~~  144 (348)
T 3d31_A           76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVL---------DTARDL--KIEHLLDRNPLTLSGGEQQRVALARALVT  144 (348)
T ss_dssp             EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHH---------HHHHHT--TCTTTTTSCGGGSCHHHHHHHHHHHHTTS
T ss_pred             EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHH---------HHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence            99999999987 99999998631   11113333         334444  56666667788999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +|++||||||||+||+.+++.+.+.|+++.  .+.|+|+|||+++.+.. ||+|++|++|++++
T Consensus       145 ~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~  208 (348)
T 3d31_A          145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQ  208 (348)
T ss_dssp             CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEE
T ss_pred             CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999998874  37899999999998755 99999999999875

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=100.00  E-value=1.1e-47  Score=391.38  Aligned_cols=205  Identities=29%  Similarity=0.479  Sum_probs=175.0

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCC------CCHHH
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE------FQLKW  334 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~------~~~~~  334 (478)
                      |+++|++++|++   .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.+      .+.. 
T Consensus         4 l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~-   79 (372)
T 1g29_1            4 VRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK-   79 (372)
T ss_dssp             EEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG-
T ss_pred             EEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh-
Confidence            899999999953   479999999999999999999999999999999999999999999999999866      4433 


Q ss_pred             hhcceEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 048556          335 IRGKIGLVSQEPVLFTS-SIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIA  411 (478)
Q Consensus       335 ~r~~i~~v~Q~~~lf~~-ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lA  411 (478)
                       ++.|+||||++.+|+. |++||+.++..  ....++..+     .+.+.++.+  |++........+||||||||++||
T Consensus        80 -~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalA  151 (372)
T 1g29_1           80 -DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQ-----RVREVAELL--GLTELLNRKPRELSGGQRQRVALG  151 (372)
T ss_dssp             -GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHH-----HHHHHHHHH--TCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred             -HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchHhcCCcccCCHHHHHHHHHH
Confidence             5789999999999986 99999998631  122222211     122333433  666667778899999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          412 RAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |||+.+|++||||||||+||+.+++.+.+.|+++.+  +.|+|+|||+++.+.. ||+|++|++|++++
T Consensus       152 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~  220 (372)
T 1g29_1          152 RAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQ  220 (372)
T ss_dssp             HHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred             HHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEE
Confidence            999999999999999999999999999999988753  7899999999998765 99999999999975

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=100.00  E-value=5.2e-47  Score=371.05  Aligned_cols=208  Identities=25%  Similarity=0.365  Sum_probs=174.0

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhcc--CCCCccEEEECCeecCCCCHHHh-h
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGVNLKEFQLKWI-R  336 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~--~~~~~G~i~~~g~~~~~~~~~~~-r  336 (478)
                      -++++||+|+|++   +++|+|+||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|.++...+...+ +
T Consensus        20 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~   96 (267)
T 2zu0_C           20 MLSIKDLHVSVED---KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG   96 (267)
T ss_dssp             CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred             eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence            4999999999952   5799999999999999999999999999999999999  57899999999999988776655 4


Q ss_pred             cceEEEecCCCCCcc-cHHHHHhcCC---------CCCCHHHHHHHHHHhcHHHHHHhCCCCccc-cccCCCC-CCChHH
Q 048556          337 GKIGLVSQEPVLFTS-SIKDNINYGK---------DGASIAEIMAAAELANAAKFIDSLPQGLDT-MVGEHGT-QLSGGQ  404 (478)
Q Consensus       337 ~~i~~v~Q~~~lf~~-ti~eNl~~~~---------~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t-~~~~~g~-~LSgGq  404 (478)
                      +.++||||++.+|++ |++||+.++.         +..+.++..     ..+.+.++.+  |+++ ....... +|||||
T Consensus        97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~~LSgGq  169 (267)
T 2zu0_C           97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQ-----DLMEEKIALL--KMPEDLLTRSVNVGFSGGE  169 (267)
T ss_dssp             HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHH-----HHHHHHHHHT--TCCTTTTTSBTTTTCCHHH
T ss_pred             CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHH-----HHHHHHHHHc--CCChhHhcCCcccCCCHHH
Confidence            569999999999987 9999997532         112222221     1234455555  6654 3344444 599999


Q ss_pred             HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh--cCEEEEEeCCEEee
Q 048556          405 KQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN--ADLIAVIHQGKLVE  477 (478)
Q Consensus       405 ~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~--~d~i~vl~~G~i~~  477 (478)
                      |||++|||||+.+|++|||||||++||+.+++.+++.|+++. +++|+|++||+++.+..  ||++++|++|++++
T Consensus       170 ~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~  245 (267)
T 2zu0_C          170 KKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK  245 (267)
T ss_dssp             HHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEE
T ss_pred             HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEE
Confidence            999999999999999999999999999999999999999875 47899999999999875  89999999999975

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=100.00  E-value=3.3e-47  Score=371.11  Aligned_cols=198  Identities=19%  Similarity=0.344  Sum_probs=170.9

Q ss_pred             EEEEeEEEECCCC-CCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          261 IELKDIYFSYPSR-PGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       261 i~~~~v~~~y~~~-~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      ++++|++++|++. ..+++|+|+||+++ ||+++|+||||||||||+|+|+|++ |++|+|.++|.++.+.  .. |+.+
T Consensus         2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i   76 (263)
T 2pjz_A            2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY   76 (263)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred             EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence            6899999999631 01479999999999 9999999999999999999999999 9999999999998754  33 7789


Q ss_pred             E-EEecCCCCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHHHHHHc
Q 048556          340 G-LVSQEPVLFTSSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQKQRIAIARAIL  415 (478)
Q Consensus       340 ~-~v~Q~~~lf~~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~Qrl~lARall  415 (478)
                      + |+||++.+ ..|++||+.++.+  ....+++.         +.++.+  |++ ...+..+.+||||||||++|||||+
T Consensus        77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~---------~~l~~~--gl~~~~~~~~~~~LSgGqkqRv~lAraL~  144 (263)
T 2pjz_A           77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFL---------EMLKAL--KLGEEILRRKLYKLSAGQSVLVRTSLALA  144 (263)
T ss_dssp             EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHH---------HHHHHT--TCCGGGGGSBGGGSCHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHH---------HHHHHc--CCChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence            9 99999998 8899999988532  22233333         344444  676 7778888999999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cC-EEEEEeCCEEee
Q 048556          416 KDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-AD-LIAVIHQGKLVE  477 (478)
Q Consensus       416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d-~i~vl~~G~i~~  477 (478)
                      .+|+++||||||++||+.+++.+.+.|+++.+  |+|++||+++.+.. || ++++|++|++++
T Consensus       145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~  206 (263)
T 2pjz_A          145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQG  206 (263)
T ss_dssp             TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEE
T ss_pred             hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEE
Confidence            99999999999999999999999999998754  99999999998765 99 999999999875

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=100.00  E-value=1.7e-47  Score=362.08  Aligned_cols=194  Identities=22%  Similarity=0.411  Sum_probs=165.9

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      .++++|++++|+   + ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.     .+++.+
T Consensus        10 ~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i   80 (214)
T 1sgw_A           10 KLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI   80 (214)
T ss_dssp             EEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred             eEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence            599999999995   3 6999999999999999999999999999999999999999999999999886     257889


Q ss_pred             EEEecCCCCCcc-cHHHHHhcCCC----CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 048556          340 GLVSQEPVLFTS-SIKDNINYGKD----GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI  414 (478)
Q Consensus       340 ~~v~Q~~~lf~~-ti~eNl~~~~~----~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal  414 (478)
                      +||||++.+|++ |++||+.++..    ....+++.         +.++.+  |++.. +..+.+||||||||++|||||
T Consensus        81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~---------~~l~~~--gl~~~-~~~~~~LSgGqkqrv~laraL  148 (214)
T 1sgw_A           81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIM---------DALESV--EVLDL-KKKLGELSQGTIRRVQLASTL  148 (214)
T ss_dssp             EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHH---------HHHHHT--TCCCT-TSBGGGSCHHHHHHHHHHHHT
T ss_pred             EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHH---------HHHHHc--CCCcC-CCChhhCCHHHHHHHHHHHHH
Confidence            999999999987 99999987521    11122333         334444  67666 778899999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 048556          415 LKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKL  475 (478)
Q Consensus       415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i  475 (478)
                      +.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+++ +..|+|
T Consensus       149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~-~~~~~~  210 (214)
T 1sgw_A          149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH-KYSTKI  210 (214)
T ss_dssp             TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG-GGBC--
T ss_pred             HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE-EeCCcc
Confidence            99999999999999999999999999998875 46899999999999887 66664 556765

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=100.00  E-value=1.1e-46  Score=365.92  Aligned_cols=193  Identities=29%  Similarity=0.414  Sum_probs=164.3

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++|++++|++  ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.             +++.++
T Consensus         5 l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~   69 (253)
T 2nq2_C            5 LSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIG   69 (253)
T ss_dssp             EEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEE
T ss_pred             EEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEE
Confidence            899999999962  24799999999999999999999999999999999999999999998             357899


Q ss_pred             EEecCCCCCc-ccHHHHHhcCCCC-------CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048556          341 LVSQEPVLFT-SSIKDNINYGKDG-------ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR  412 (478)
Q Consensus       341 ~v~Q~~~lf~-~ti~eNl~~~~~~-------~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lAR  412 (478)
                      ||||++.+|. .|++||+.++...       ...+. .     ..+.+.++.+  |++........+||||||||++|||
T Consensus        70 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lAr  141 (253)
T 2nq2_C           70 FVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHD-Y-----QVAMQALDYL--NLTHLAKREFTSLSGGQRQLILIAR  141 (253)
T ss_dssp             EECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHH-H-----HHHHHHHHHT--TCGGGTTSBGGGSCHHHHHHHHHHH
T ss_pred             EEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHH-H-----HHHHHHHHHc--CChHHhcCChhhCCHHHHHHHHHHH
Confidence            9999999884 5999999986421       11111 1     1123344444  6666667778899999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEee
Q 048556          413 AILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVR-NADLIAVIHQGKLVE  477 (478)
Q Consensus       413 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~  477 (478)
                      ||+.+|++|||||||++||+.+++.+.+.|+++.+  ++|+|++||+++.+. .||++++|++|+ ++
T Consensus       142 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~  208 (253)
T 2nq2_C          142 AIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FK  208 (253)
T ss_dssp             HHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EE
T ss_pred             HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-Ee
Confidence            99999999999999999999999999999988753  789999999999885 599999999999 54

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=100.00  E-value=3.2e-37  Score=328.84  Aligned_cols=188  Identities=21%  Similarity=0.285  Sum_probs=158.4

Q ss_pred             ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556          259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK  338 (478)
Q Consensus       259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~  338 (478)
                      ..++++|+++.|.+    ..+++.||+|++||++||+||||||||||+++|+|+++|++|+|.+++            +.
T Consensus       268 ~~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~  331 (538)
T 3ozx_A          268 TKMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QI  331 (538)
T ss_dssp             EEEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CC
T ss_pred             ceEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------ee
Confidence            35899999999953    468888999999999999999999999999999999999999998754            46


Q ss_pred             eEEEecCCCC-CcccHHHHHhcCCCCC---CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 048556          339 IGLVSQEPVL-FTSSIKDNINYGKDGA---SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI  414 (478)
Q Consensus       339 i~~v~Q~~~l-f~~ti~eNl~~~~~~~---~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal  414 (478)
                      ++|+||+... +..|+++|+.+.....   ..+..         .+.++.+  |+.........+||||||||++|||||
T Consensus       332 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~---------~~~l~~~--~l~~~~~~~~~~LSGGq~QRv~iAraL  400 (538)
T 3ozx_A          332 LSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFF---------EEVTKRL--NLHRLLESNVNDLSGGELQKLYIAATL  400 (538)
T ss_dssp             EEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHH---------HHTTTTT--TGGGCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred             eEeechhcccccCCCHHHHHHHhhhhccchhHHHH---------HHHHHHc--CCHHHhcCChhhCCHHHHHHHHHHHHH
Confidence            8999999865 4679999998743221   11111         2333333  666667778899999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCC
Q 048556          415 LKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQG  473 (478)
Q Consensus       415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G  473 (478)
                      +.+|++|||||||++||+.++..+.+.|+++.  .++|+|+|||+++.+.. ||||++|++|
T Consensus       401 ~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~  462 (538)
T 3ozx_A          401 AKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGE  462 (538)
T ss_dssp             HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred             HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence            99999999999999999999999999999874  47899999999999876 9999999863

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=100.00  E-value=3.3e-37  Score=329.33  Aligned_cols=190  Identities=23%  Similarity=0.351  Sum_probs=158.4

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      .++++|+++.|.+    ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+             +..+
T Consensus       287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i  349 (538)
T 1yqt_A          287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTV  349 (538)
T ss_dssp             EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCE
T ss_pred             EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceE
Confidence            5899999999952    4699999999999999999999999999999999999999999975             2469


Q ss_pred             EEEecCCCC-CcccHHHHHhcC-CCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556          340 GLVSQEPVL-FTSSIKDNINYG-KDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD  417 (478)
Q Consensus       340 ~~v~Q~~~l-f~~ti~eNl~~~-~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~  417 (478)
                      +|+||++.. +..|+.||+... .+...++        ..+.+.++.+  |+.........+||||||||++|||||+.+
T Consensus       350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~--------~~~~~~l~~~--~l~~~~~~~~~~LSGGe~qrv~lAraL~~~  419 (538)
T 1yqt_A          350 AYKPQYIKADYEGTVYELLSKIDASKLNSN--------FYKTELLKPL--GIIDLYDREVNELSGGELQRVAIAATLLRD  419 (538)
T ss_dssp             EEECSSCCCCCSSBHHHHHHHHHHHHHTCH--------HHHHHTTTTT--TCGGGTTSBGGGCCHHHHHHHHHHHHHTSC
T ss_pred             EEEecCCcCCCCCcHHHHHHhhhccCCCHH--------HHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHHhC
Confidence            999999876 456999998643 1100100        1123344444  666666778899999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeC--CEEe
Q 048556          418 PRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQ--GKLV  476 (478)
Q Consensus       418 ~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~--G~i~  476 (478)
                      |++|||||||++||+.+...+.+.|+++.  .++|+|+|||+++.+.. ||||++|++  |+++
T Consensus       420 p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~  483 (538)
T 1yqt_A          420 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYG  483 (538)
T ss_dssp             CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEe
Confidence            99999999999999999999999999874  37899999999999876 999999986  5543

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=100.00  E-value=6.5e-37  Score=330.62  Aligned_cols=188  Identities=24%  Similarity=0.362  Sum_probs=157.2

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      .++++|+++.|.+    ..|+++||++++||++||+||||||||||+++|+|+++|++|+|.+             +..+
T Consensus       357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i  419 (607)
T 3bk7_A          357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTV  419 (607)
T ss_dssp             EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCE
T ss_pred             EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEE
Confidence            5899999999953    3689999999999999999999999999999999999999999975             2469


Q ss_pred             EEEecCCCC-CcccHHHHHhcC-CCCC-CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556          340 GLVSQEPVL-FTSSIKDNINYG-KDGA-SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK  416 (478)
Q Consensus       340 ~~v~Q~~~l-f~~ti~eNl~~~-~~~~-~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~  416 (478)
                      +|+||++.. +..|+.||+... .+.. ..+.         +.+.++.+  |++........+||||||||++|||||+.
T Consensus       420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~---------~~~~l~~~--~l~~~~~~~~~~LSGGe~QRv~iAraL~~  488 (607)
T 3bk7_A          420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFY---------KTELLKPL--GIIDLYDRNVEDLSGGELQRVAIAATLLR  488 (607)
T ss_dssp             EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHH---------HHHTHHHH--TCTTTTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred             EEEecCccCCCCCcHHHHHHhhhccCCCHHHH---------HHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHh
Confidence            999999876 456999998753 1100 0111         22334433  56556667788999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeC--CEE
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQ--GKL  475 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~--G~i  475 (478)
                      +|++|||||||++||+.++..+.+.|+++.  .++|+|+|||+++.+.. ||||++|++  |++
T Consensus       489 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~  552 (607)
T 3bk7_A          489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRH  552 (607)
T ss_dssp             CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTE
T ss_pred             CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceE
Confidence            999999999999999999999999999874  47899999999999876 999999985  554

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=100.00  E-value=2.8e-37  Score=344.67  Aligned_cols=202  Identities=22%  Similarity=0.395  Sum_probs=155.4

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      -++++|++|+|++. .+++|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|.           ..+
T Consensus       671 mL~v~nLs~~Y~g~-~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I  738 (986)
T 2iw3_A          671 IVKVTNMEFQYPGT-SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRI  738 (986)
T ss_dssp             EEEEEEEEECCTTC-SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCE
T ss_pred             eEEEEeeEEEeCCC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cce
Confidence            48999999999742 257999999999999999999999999999999999999999999999862           146


Q ss_pred             EEEecCCCC-----CcccHHHHHh--------------------------------------------------------
Q 048556          340 GLVSQEPVL-----FTSSIKDNIN--------------------------------------------------------  358 (478)
Q Consensus       340 ~~v~Q~~~l-----f~~ti~eNl~--------------------------------------------------------  358 (478)
                      +|++|++..     .+.|+++|+.                                                        
T Consensus       739 ~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e  818 (986)
T 2iw3_A          739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE  818 (986)
T ss_dssp             EEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred             EeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence            777776521     1234555443                                                        


Q ss_pred             ----------cCCC---CCC--------HHHHHH-------------HH--------HHhcHHHHHHhCCCCcccc--cc
Q 048556          359 ----------YGKD---GAS--------IAEIMA-------------AA--------ELANAAKFIDSLPQGLDTM--VG  394 (478)
Q Consensus       359 ----------~~~~---~~~--------~~~~~~-------------a~--------~~~~~~~~i~~lp~g~~t~--~~  394 (478)
                                ++.+   ..+        .+++.+             +.        ....+.+.++.+  |++..  ..
T Consensus       819 ~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~l--GL~~~~~~~  896 (986)
T 2iw3_A          819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSML--GLDPEIVSH  896 (986)
T ss_dssp             EEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHT--TCCHHHHHH
T ss_pred             hhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHc--CCCchhhcC
Confidence                      2210   000        000000             00        011234455655  66543  35


Q ss_pred             CCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCC
Q 048556          395 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQG  473 (478)
Q Consensus       395 ~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G  473 (478)
                      ....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++.  +.|+|+|||+++.+.. ||++++|++|
T Consensus       897 ~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrVivL~~G  974 (986)
T 2iw3_A          897 SRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEVWAVKDG  974 (986)
T ss_dssp             SCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEEECCBTT
T ss_pred             CCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECC
Confidence            667899999999999999999999999999999999999999999999875  5699999999999865 9999999999


Q ss_pred             EEee
Q 048556          474 KLVE  477 (478)
Q Consensus       474 ~i~~  477 (478)
                      ++++
T Consensus       975 ~Iv~  978 (986)
T 2iw3_A          975 RMTP  978 (986)
T ss_dssp             BCCC
T ss_pred             EEEE
Confidence            9864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=100.00  E-value=9e-37  Score=329.50  Aligned_cols=193  Identities=21%  Similarity=0.344  Sum_probs=155.0

Q ss_pred             EeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEE---------EECCeecCCCCHH-
Q 048556          264 KDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV---------LIDGVNLKEFQLK-  333 (478)
Q Consensus       264 ~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i---------~~~g~~~~~~~~~-  333 (478)
                      +|++++|++.  ..+|+|+| ++++||+++|+||||||||||+|+|+|+++|++|++         .++|.++..+... 
T Consensus        95 ~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~  171 (607)
T 3bk7_A           95 EDCVHRYGVN--AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERL  171 (607)
T ss_dssp             GSEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHH
T ss_pred             CCeEEEECCC--CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhh
Confidence            8999999632  25899999 999999999999999999999999999999999996         4566655432111 


Q ss_pred             -HhhcceEEEecCCC----CCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 048556          334 -WIRGKIGLVSQEPV----LFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRI  408 (478)
Q Consensus       334 -~~r~~i~~v~Q~~~----lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl  408 (478)
                       ..+..+++++|...    ++.+|++||+.....   .+++.+         .++.+  |++........+||||||||+
T Consensus       172 ~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~---~~~~~~---------~L~~l--gL~~~~~~~~~~LSGGekQRv  237 (607)
T 3bk7_A          172 KNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDE---VGKFEE---------VVKEL--ELENVLDRELHQLSGGELQRV  237 (607)
T ss_dssp             HHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCC---SSCHHH---------HHHHT--TCTTGGGSBGGGCCHHHHHHH
T ss_pred             hhhhcceEEeechhhhchhhccccHHHHhhhhHH---HHHHHH---------HHHHc--CCCchhCCChhhCCHHHHHHH
Confidence             12345889998743    445699999975321   122333         33333  555556667789999999999


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCC
Q 048556          409 AIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQG  473 (478)
Q Consensus       409 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G  473 (478)
                      +|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|+++
T Consensus       238 aIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~  304 (607)
T 3bk7_A          238 AIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE  304 (607)
T ss_dssp             HHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred             HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence            99999999999999999999999999999999999875 47899999999998876 9999999865

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=100.00  E-value=1.1e-36  Score=325.42  Aligned_cols=196  Identities=21%  Similarity=0.350  Sum_probs=153.1

Q ss_pred             EEE-EeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEE---------EECCeecCCC
Q 048556          261 IEL-KDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV---------LIDGVNLKEF  330 (478)
Q Consensus       261 i~~-~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i---------~~~g~~~~~~  330 (478)
                      .++ +|++|+|++.  .++++|+| +|++||++||+||||||||||+|+|+|+++|++|++         .++|.++...
T Consensus        21 ~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~   97 (538)
T 1yqt_A           21 EQLEEDCVHRYGVN--AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY   97 (538)
T ss_dssp             ---CCCEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHH
T ss_pred             hhHhcCcEEEECCc--cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHH
Confidence            345 6999999632  25899999 999999999999999999999999999999999995         3566554332


Q ss_pred             CHHH--hhcceEEEecCCCCC----cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHH
Q 048556          331 QLKW--IRGKIGLVSQEPVLF----TSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQ  404 (478)
Q Consensus       331 ~~~~--~r~~i~~v~Q~~~lf----~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq  404 (478)
                      ....  .+..+++++|....+    .+|++||+.....   .+++.         +.++.+  |++........+|||||
T Consensus        98 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~---~~~~~---------~~l~~l--gl~~~~~~~~~~LSgGe  163 (538)
T 1yqt_A           98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADE---TGKLE---------EVVKAL--ELENVLEREIQHLSGGE  163 (538)
T ss_dssp             HHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCS---SSCHH---------HHHHHT--TCTTTTTSBGGGCCHHH
T ss_pred             HHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhH---HHHHH---------HHHHHc--CCChhhhCChhhCCHHH
Confidence            1111  134588999975443    3589999864211   12222         333433  55555566678999999


Q ss_pred             HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCC
Q 048556          405 KQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQG  473 (478)
Q Consensus       405 ~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G  473 (478)
                      |||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|
T Consensus       164 kQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~  234 (538)
T 1yqt_A          164 LQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE  234 (538)
T ss_dssp             HHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred             HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence            999999999999999999999999999999999999998875 47899999999999876 9999999864

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=100.00  E-value=3.4e-40  Score=326.85  Aligned_cols=220  Identities=17%  Similarity=0.230  Sum_probs=178.9

Q ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccCCCCCCccCCCCccEEEEeEEEEC
Q 048556          191 LEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPLIDAYDSNGVKLDDIRGDIELKDIYFSY  270 (478)
Q Consensus       191 ~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y  270 (478)
                      ..+..+-+.+.+++.+..+ ..++..+...+..++++..+.+|+.++++.+++.....  . ......+.|+++||+|.|
T Consensus        36 a~~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~--~-~~~~~~~~i~~~~vs~~y  111 (305)
T 2v9p_A           36 ALAAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGE--G-SWKSILTFFNYQNIELIT  111 (305)
T ss_dssp             HHTTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSS--C-CTHHHHHHHHHTTCCHHH
T ss_pred             HHhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC--C-cccccCCeEEEEEEEEEc
Confidence            3455666777787766555 47899999999999999999999999998654322111  1 111112358999999999


Q ss_pred             CCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCc
Q 048556          271 PSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFT  350 (478)
Q Consensus       271 ~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~  350 (478)
                      +    .++|+|+||+|++|++++|+||||||||||+++|+|++   +|+|                  ++|++|++++|.
T Consensus       112 ~----~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~  166 (305)
T 2v9p_A          112 F----INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWL  166 (305)
T ss_dssp             H----HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGG
T ss_pred             C----hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCcccccc
Confidence            5    37999999999999999999999999999999999999   7998                  357899999999


Q ss_pred             ccHHH-HHhcCCCCCCHHHHHHHHHHhcHHHHHHh-CCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCC
Q 048556          351 SSIKD-NINYGKDGASIAEIMAAAELANAAKFIDS-LPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS  428 (478)
Q Consensus       351 ~ti~e-Nl~~~~~~~~~~~~~~a~~~~~~~~~i~~-lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts  428 (478)
                      +|+++ |+.++. +.++          +++++++. +|+|++      |.+||||||||   |||++++|+|||    ||
T Consensus       167 ~ti~~~ni~~~~-~~~~----------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts  222 (305)
T 2v9p_A          167 ASLADTRAALVD-DATH----------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TS  222 (305)
T ss_dssp             GGGTTCSCEEEE-EECH----------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EE
T ss_pred             ccHHHHhhccCc-cccH----------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----EC
Confidence            99998 999863 3442          34567777 999998      78999999999   999999999999    99


Q ss_pred             CCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          429 ALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       429 ~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      +||+.+++.+..             +|||++.++.||+| +|++|++++
T Consensus       223 ~LD~~~~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~  257 (305)
T 2v9p_A          223 NIDVQAEDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPF  257 (305)
T ss_dssp             SSCSTTCGGGGG-------------GTTTEEEEECCCCC-CCC---CCC
T ss_pred             CCCHHHHHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEE
Confidence            999999988852             29999999999999 999999976

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=100.00  E-value=1.5e-35  Score=325.32  Aligned_cols=193  Identities=25%  Similarity=0.398  Sum_probs=129.7

Q ss_pred             CcccccceeeecCCCEEEEEcCCCCChHHHH---------------------HHHhccCCCC-------ccEEEECCeec
Q 048556          276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVI---------------------SLIERFYDPQ-------AGEVLIDGVNL  327 (478)
Q Consensus       276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~---------------------~ll~g~~~~~-------~G~i~~~g~~~  327 (478)
                      .++|+|+||+|++||++||+||||||||||+                     +++.|+..|+       .|.|.++|.+.
T Consensus        31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~  110 (670)
T 3ux8_A           31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT  110 (670)
T ss_dssp             STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred             ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence            4699999999999999999999999999998                     8999999998       45566666554


Q ss_pred             CCCCHHHhhcceEEEecCCCCC--------------------cccHHHHHhcCCCC-CC--HHHH-----HHHHHHhcHH
Q 048556          328 KEFQLKWIRGKIGLVSQEPVLF--------------------TSSIKDNINYGKDG-AS--IAEI-----MAAAELANAA  379 (478)
Q Consensus       328 ~~~~~~~~r~~i~~v~Q~~~lf--------------------~~ti~eNl~~~~~~-~~--~~~~-----~~a~~~~~~~  379 (478)
                      ...    .++.+++|+|.+.++                    ..|++||+.+.... ..  +.+.     .+..+..   
T Consensus       111 ~~~----~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  183 (670)
T 3ux8_A          111 SRN----PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL---  183 (670)
T ss_dssp             --------CCBHHHHTTCC-------------------------CC--------------------------CHHHH---
T ss_pred             hcc----chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH---
Confidence            332    245566666654332                    34899999875311 11  1111     1111111   


Q ss_pred             HHHHhCCCCcccc-ccCCCCCCChHHHHHHHHHHHHcCCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEe
Q 048556          380 KFIDSLPQGLDTM-VGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSALDAESERVVQEALDKIM-INRTTVIVA  455 (478)
Q Consensus       380 ~~i~~lp~g~~t~-~~~~g~~LSgGq~Qrl~lARall~~~~--ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~it  455 (478)
                      +.++.+  |++.. ......+||||||||++|||||+.+|+  +|||||||++||+.+...+++.|+++. +++|+|+||
T Consensus       184 ~~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vt  261 (670)
T 3ux8_A          184 GFLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE  261 (670)
T ss_dssp             HHHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             HHHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence            234444  55433 456678999999999999999999988  999999999999999999999998875 478999999


Q ss_pred             cCchhhhhcCEEEEE------eCCEEee
Q 048556          456 HRLSTVRNADLIAVI------HQGKLVE  477 (478)
Q Consensus       456 H~~~~~~~~d~i~vl------~~G~i~~  477 (478)
                      |+++.+..||+|++|      ++|++++
T Consensus       262 Hd~~~~~~~d~ii~l~~g~~~~~G~i~~  289 (670)
T 3ux8_A          262 HDEDTMLAADYLIDIGPGAGIHGGEVVA  289 (670)
T ss_dssp             CCHHHHHHCSEEEEECSSSGGGCCSEEE
T ss_pred             CCHHHHhhCCEEEEecccccccCCEEEE
Confidence            999998889999999      8898874

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=100.00  E-value=5.4e-34  Score=318.26  Aligned_cols=188  Identities=26%  Similarity=0.335  Sum_probs=151.3

Q ss_pred             ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556          259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK  338 (478)
Q Consensus       259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~  338 (478)
                      ..+...|++++|++   +++|+|+||++++||+++|+||||||||||+|+|+|      |+|  +|.+...      +..
T Consensus       434 ~~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~  496 (986)
T 2iw3_A          434 EDLCNCEFSLAYGA---KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECR  496 (986)
T ss_dssp             CEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSC
T ss_pred             ceeEEeeEEEEECC---EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------cee
Confidence            35888899999963   479999999999999999999999999999999995      554  4544321      124


Q ss_pred             eEEEecCC-CCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556          339 IGLVSQEP-VLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK  416 (478)
Q Consensus       339 i~~v~Q~~-~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~  416 (478)
                      ++|++|++ .++.. |+.||+.+..... .+++.+.++..++.          +........+||||||||++|||||+.
T Consensus       497 ~~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~----------~~~~~~~~~~LSGGqkQRvaLArAL~~  565 (986)
T 2iw3_A          497 TVYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFT----------DEMIAMPISALSGGWKMKLALARAVLR  565 (986)
T ss_dssp             EEETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCC----------HHHHHSBGGGCCHHHHHHHHHHHHHHT
T ss_pred             EEEEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCC----------hhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence            78999985 45544 9999998621111 44455444444431          123344567899999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEe
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLV  476 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~  476 (478)
                      +|++|||||||++||+.+.+.+.+.|++  .++|+|+|||+++.+.. ||+|++|++|+++
T Consensus       566 ~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv  624 (986)
T 2iw3_A          566 NADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLR  624 (986)
T ss_dssp             TCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred             CCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeee
Confidence            9999999999999999999999999988  58899999999999876 9999999999985

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.8e-35  Score=313.14  Aligned_cols=188  Identities=24%  Similarity=0.404  Sum_probs=153.1

Q ss_pred             EeEEEECCCCCCCcccccceeeecCC-----CEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556          264 KDIYFSYPSRPGEQIFNGFSLSIPSG-----TTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK  338 (478)
Q Consensus       264 ~~v~~~y~~~~~~~~l~~is~~i~~G-----~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~  338 (478)
                      ++++|+|++  ...+++|+||++++|     |+++|+||||||||||+++|+|+++|++|+.      +.       +..
T Consensus       350 ~~~~~~y~~--~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~  414 (608)
T 3j16_B          350 ASRAFSYPS--LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLN  414 (608)
T ss_dssp             SSSCCEECC--EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCC
T ss_pred             cceeEEecC--cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCc
Confidence            678888964  246899999999998     8899999999999999999999999999962      11       346


Q ss_pred             eEEEecCCC-CCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556          339 IGLVSQEPV-LFTSSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL  415 (478)
Q Consensus       339 i~~v~Q~~~-lf~~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall  415 (478)
                      ++|+||+.. .|+.|+++|+......  ...+...+         .++.+  |+.........+||||||||++|||||+
T Consensus       415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~---------~l~~l--~l~~~~~~~~~~LSGGqkQRv~iAraL~  483 (608)
T 3j16_B          415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTD---------VVKPL--RIDDIIDQEVQHLSGGELQRVAIVLALG  483 (608)
T ss_dssp             EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHH---------THHHH--TSTTTSSSBSSSCCHHHHHHHHHHHHTT
T ss_pred             EEEecccccccCCccHHHHHHHHhhcccccHHHHHH---------HHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHH
Confidence            999999975 4678999998643211  12222222         23322  4555666778899999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeC--CEEee
Q 048556          416 KDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQ--GKLVE  477 (478)
Q Consensus       416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~--G~i~~  477 (478)
                      .+|++|||||||++||+.+...+.+.|+++.  .++|+|+|||+++.+.. ||||++|++  |+++.
T Consensus       484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~  550 (608)
T 3j16_B          484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAH  550 (608)
T ss_dssp             SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEE
T ss_pred             hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEe
Confidence            9999999999999999999999999998874  47899999999999876 999999986  76653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.3e-34  Score=308.15  Aligned_cols=195  Identities=20%  Similarity=0.355  Sum_probs=146.3

Q ss_pred             eEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEE-----------EECCeecCCCCHH
Q 048556          265 DIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV-----------LIDGVNLKEFQLK  333 (478)
Q Consensus       265 ~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i-----------~~~g~~~~~~~~~  333 (478)
                      |++++|...  ...|++++ ++++||++||+||||||||||+|+|+|+++|++|+|           .+.|.++..+...
T Consensus        82 ~~~~~Y~~~--~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~  158 (608)
T 3j16_B           82 HVTHRYSAN--SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK  158 (608)
T ss_dssp             TEEEECSTT--SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred             CeEEEECCC--ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhH
Confidence            468888642  35777777 699999999999999999999999999999999998           3344443332222


Q ss_pred             HhhcceE--EEecCCCC----Cc---ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHH
Q 048556          334 WIRGKIG--LVSQEPVL----FT---SSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQ  404 (478)
Q Consensus       334 ~~r~~i~--~v~Q~~~l----f~---~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq  404 (478)
                      .+.+.+.  +.+|....    +.   .++.+++..... ...+++.++++.         +  |++........+|||||
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~-~~~~~~~~~l~~---------~--gl~~~~~~~~~~LSgGe  226 (608)
T 3j16_B          159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRME-KSPEDVKRYIKI---------L--QLENVLKRDIEKLSGGE  226 (608)
T ss_dssp             HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCC-SCHHHHHHHHHH---------H--TCTGGGGSCTTTCCHHH
T ss_pred             HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhh-hHHHHHHHHHHH---------c--CCcchhCCChHHCCHHH
Confidence            3333332  33443221    11   156666654322 223344433333         3  56666677789999999


Q ss_pred             HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchhhhh-cCEEEEEeCCE
Q 048556          405 KQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI-NRTTVIVAHRLSTVRN-ADLIAVIHQGK  474 (478)
Q Consensus       405 ~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-~d~i~vl~~G~  474 (478)
                      |||++|||||+.+|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|.
T Consensus       227 ~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~  298 (608)
T 3j16_B          227 LQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP  298 (608)
T ss_dssp             HHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred             HHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence            9999999999999999999999999999999999999998864 7899999999999877 99999998764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=100.00  E-value=1.2e-34  Score=308.96  Aligned_cols=191  Identities=20%  Similarity=0.372  Sum_probs=147.4

Q ss_pred             eEEEECCCCCCCcccccceeee-cCCCEEEEEcCCCCChHHHHHHHhccCCCCccEE-----------EECCeecCCCCH
Q 048556          265 DIYFSYPSRPGEQIFNGFSLSI-PSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV-----------LIDGVNLKEFQL  332 (478)
Q Consensus       265 ~v~~~y~~~~~~~~l~~is~~i-~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i-----------~~~g~~~~~~~~  332 (478)
                      +++.+|..+    .++-..+.+ ++||++||+||||||||||+|+|+|+++|++|+|           .++|.++..+..
T Consensus         4 ~~~~~~~~~----~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~   79 (538)
T 3ozx_A            4 EVIHRYKVN----GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFK   79 (538)
T ss_dssp             CEEEESSTT----SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHH
T ss_pred             CCceecCCC----ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHH
Confidence            567789632    344445554 5999999999999999999999999999999998           677776643322


Q ss_pred             HHhh------cceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHH
Q 048556          333 KWIR------GKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQ  406 (478)
Q Consensus       333 ~~~r------~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Q  406 (478)
                      ....      ..+.+++|.+.++.+|+++++......   ++..+++         +.+  |++........+|||||||
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~---~~~~~~l---------~~l--~l~~~~~~~~~~LSgGe~Q  145 (538)
T 3ozx_A           80 ELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDER---GKKDEVK---------ELL--NMTNLWNKDANILSGGGLQ  145 (538)
T ss_dssp             HHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCCS---SCHHHHH---------HHT--TCGGGTTSBGGGCCHHHHH
T ss_pred             HHhhcccchhhccchhhhhhhhccCcHHHHhhcchhH---HHHHHHH---------HHc--CCchhhcCChhhCCHHHHH
Confidence            2111      224455555667778999887543221   1222233         333  4555556667899999999


Q ss_pred             HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCC
Q 048556          407 RIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQG  473 (478)
Q Consensus       407 rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G  473 (478)
                      |++|||||+.+|++||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|
T Consensus       146 rv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~  213 (538)
T 3ozx_A          146 RLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGE  213 (538)
T ss_dssp             HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred             HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCC
Confidence            999999999999999999999999999999999999998778999999999998876 9999999865

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=100.00  E-value=3.9e-34  Score=314.11  Aligned_cols=190  Identities=24%  Similarity=0.390  Sum_probs=140.9

Q ss_pred             CcccccceeeecCCCEEEEEcCCCCChHHHHHHHh----------------------ccCCCCccEEEECCeecCCCCHH
Q 048556          276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIE----------------------RFYDPQAGEVLIDGVNLKEFQLK  333 (478)
Q Consensus       276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~----------------------g~~~~~~G~i~~~g~~~~~~~~~  333 (478)
                      .++|+|+||+|++||++||+||||||||||+++++                      |+..+ +|.|.++|.++...+..
T Consensus       335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~~  413 (670)
T 3ux8_A          335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPRS  413 (670)
T ss_dssp             STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTTC
T ss_pred             ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc-CceeEeccccCCCCCCc
Confidence            46899999999999999999999999999998754                      34443 57899999887654321


Q ss_pred             Hhhc-----------------------------------------ceEEEecCCCCC-----------------------
Q 048556          334 WIRG-----------------------------------------KIGLVSQEPVLF-----------------------  349 (478)
Q Consensus       334 ~~r~-----------------------------------------~i~~v~Q~~~lf-----------------------  349 (478)
                      ..+.                                         ..++++|+..++                       
T Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  493 (670)
T 3ux8_A          414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT  493 (670)
T ss_dssp             CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred             chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence            1100                                         112233322211                       


Q ss_pred             ----------cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHHHHHHcCCC
Q 048556          350 ----------TSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQKQRIAIARAILKDP  418 (478)
Q Consensus       350 ----------~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~Qrl~lARall~~~  418 (478)
                                ..|++||+.+....   .+..++      .+.+..+  |+. ...+..+.+||||||||++|||||+.+|
T Consensus       494 ~~~~~~~~~~~ltv~e~l~~~~~~---~~~~~~------~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p  562 (670)
T 3ux8_A          494 YKGKNIAEVLDMTVEDALDFFASI---PKIKRK------LETLYDV--GLGYMKLGQPATTLSGGEAQRVKLAAELHRRS  562 (670)
T ss_dssp             BTTBCHHHHHTSBHHHHHHHTTTC---HHHHHH------HHHHHHT--TCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCC
T ss_pred             ecCCCHHHHhhCCHHHHHHHHHHh---hhHHHH------HHHHHHc--CCchhhccCCchhCCHHHHHHHHHHHHHhhCC
Confidence                      24888888876432   111111      2333443  443 3456778999999999999999999887


Q ss_pred             ---CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEE------eCCEEee
Q 048556          419 ---RILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIAVI------HQGKLVE  477 (478)
Q Consensus       419 ---~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl------~~G~i~~  477 (478)
                         ++|||||||++||+.+.+.+++.|+++. +++|+|+|||+++.++.||+|++|      ++|+|++
T Consensus       563 ~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~  631 (670)
T 3ux8_A          563 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVA  631 (670)
T ss_dssp             CSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEE
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEE
Confidence               5999999999999999999999999875 478999999999999889999999      8999985

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.98  E-value=1.6e-32  Score=284.48  Aligned_cols=199  Identities=18%  Similarity=0.283  Sum_probs=151.6

Q ss_pred             cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC--------------------------------------CCcc
Q 048556          277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD--------------------------------------PQAG  318 (478)
Q Consensus       277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--------------------------------------~~~G  318 (478)
                      ..+++++|++++| +++|+||||||||||+++|.++..                                      +.+|
T Consensus        49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~  127 (415)
T 4aby_A           49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG  127 (415)
T ss_dssp             TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred             cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence            3789999999999 999999999999999999976653                                      4578


Q ss_pred             EEEECCeecCCCCHHHhhcc-eEEEecCCCCCcccHHHHHhcCCCCCCH-------------------------------
Q 048556          319 EVLIDGVNLKEFQLKWIRGK-IGLVSQEPVLFTSSIKDNINYGKDGASI-------------------------------  366 (478)
Q Consensus       319 ~i~~~g~~~~~~~~~~~r~~-i~~v~Q~~~lf~~ti~eNl~~~~~~~~~-------------------------------  366 (478)
                      ++++||.+++..+..++.+. +++++|+..++..+..++..+.+.....                               
T Consensus       128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~  207 (415)
T 4aby_A          128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP  207 (415)
T ss_dssp             EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred             EEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence            99999999987777777766 8999999988766655554443221110                               


Q ss_pred             -------------HHHHHHH------H-------HhcHHHHHHhC--CC----------------Cccc---cccCCCCC
Q 048556          367 -------------AEIMAAA------E-------LANAAKFIDSL--PQ----------------GLDT---MVGEHGTQ  399 (478)
Q Consensus       367 -------------~~~~~a~------~-------~~~~~~~i~~l--p~----------------g~~t---~~~~~g~~  399 (478)
                                   +++.+..      +       ...+.+.+..+  |.                |++.   .+..++..
T Consensus       208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  287 (415)
T 4aby_A          208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE  287 (415)
T ss_dssp             --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence                         0000000      0       00111222322  11                2222   33444444


Q ss_pred             --------CChHHHHHHHHHHHHcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEE
Q 048556          400 --------LSGGQKQRIAIARAILKDP--RILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAV  469 (478)
Q Consensus       400 --------LSgGq~Qrl~lARall~~~--~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~v  469 (478)
                              |||||+||++|||+|+.+|  ++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+..||++++
T Consensus       288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~  367 (415)
T 4aby_A          288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYK  367 (415)
T ss_dssp             CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEE
T ss_pred             cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEE
Confidence                    8999999999999999999  999999999999999999999999998778999999999999888999999


Q ss_pred             E----eCCEEe
Q 048556          470 I----HQGKLV  476 (478)
Q Consensus       470 l----~~G~i~  476 (478)
                      |    ++|+++
T Consensus       368 l~k~~~~G~~~  378 (415)
T 4aby_A          368 VEKQVEDGRTV  378 (415)
T ss_dssp             EEEEEETTEEE
T ss_pred             EEEeccCCceE
Confidence            9    999975

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.97  E-value=8.9e-32  Score=300.11  Aligned_cols=190  Identities=28%  Similarity=0.465  Sum_probs=141.1

Q ss_pred             cccccceeeecCCCEEEEEcCCCCChHHHH---------HHHhccCCC------Ccc------EEEECCeecCCCCH---
Q 048556          277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVI---------SLIERFYDP------QAG------EVLIDGVNLKEFQL---  332 (478)
Q Consensus       277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~---------~ll~g~~~~------~~G------~i~~~g~~~~~~~~---  332 (478)
                      +.|+|+||+|++|++++|+||||||||||+         +++.+...+      .+|      .+.++..++.....   
T Consensus       598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~  677 (916)
T 3pih_A          598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP  677 (916)
T ss_dssp             TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred             ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence            579999999999999999999999999997         344433322      223      35566555432110   


Q ss_pred             -------HHhh-------------------------------cceEEEecCCCCCc------------------------
Q 048556          333 -------KWIR-------------------------------GKIGLVSQEPVLFT------------------------  350 (478)
Q Consensus       333 -------~~~r-------------------------------~~i~~v~Q~~~lf~------------------------  350 (478)
                             +.+|                               +..|+++++..+++                        
T Consensus       678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~  757 (916)
T 3pih_A          678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK  757 (916)
T ss_dssp             HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred             cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence                   0111                               23467777766543                        


Q ss_pred             ---------ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHHHHHHcCCC--
Q 048556          351 ---------SSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQKQRIAIARAILKDP--  418 (478)
Q Consensus       351 ---------~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~Qrl~lARall~~~--  418 (478)
                               .|+.|++.+.......++.         .+.+..+  |+. ..+++.+.+||||||||++|||||+++|  
T Consensus       758 g~~i~~vl~~tv~eal~f~~~~~~~~~~---------~~~L~~v--GL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~  826 (916)
T 3pih_A          758 GKNISDILDMTVDEALEFFKNIPSIKRT---------LQVLHDV--GLGYVKLGQPATTLSGGEAQRIKLASELRKRDTG  826 (916)
T ss_dssp             TBCHHHHHSSBHHHHHHHTTTCHHHHHH---------HHHHHHT--TGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCS
T ss_pred             cCCHHHHhhCCHHHHHHHHhcchhHHHH---------HHHHHHc--CCchhhccCCccCCCHHHHHHHHHHHHHhhCCCC
Confidence                     3566666665432111122         2344444  454 3578999999999999999999999876  


Q ss_pred             -CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEE------eCCEEee
Q 048556          419 -RILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIAVI------HQGKLVE  477 (478)
Q Consensus       419 -~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl------~~G~i~~  477 (478)
                       ++|||||||++||+.+++.+++.|+++. +++|||+|||+++.++.||+|++|      ++|+|++
T Consensus       827 p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~  893 (916)
T 3pih_A          827 RTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVA  893 (916)
T ss_dssp             SEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEE
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEE
Confidence             7999999999999999999999999875 578999999999999999999999      8999986

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.97  E-value=1.7e-31  Score=295.54  Aligned_cols=203  Identities=26%  Similarity=0.399  Sum_probs=150.2

Q ss_pred             ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHH-HhccCC-------C---------------
Q 048556          259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISL-IERFYD-------P---------------  315 (478)
Q Consensus       259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~l-l~g~~~-------~---------------  315 (478)
                      ..++++|+++        ..|+|+||+|++||++||+|+||||||||++. |+|+..       |               
T Consensus       501 ~~L~v~~l~~--------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~  572 (842)
T 2vf7_A          501 GWLELNGVTR--------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG  572 (842)
T ss_dssp             CEEEEEEEEE--------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred             ceEEEEeeee--------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence            3589999976        26999999999999999999999999999996 766542       2               


Q ss_pred             ---Ccc-------EEEECCeecCCCCH----------HHhhcceEEEe---------cC---------------------
Q 048556          316 ---QAG-------EVLIDGVNLKEFQL----------KWIRGKIGLVS---------QE---------------------  345 (478)
Q Consensus       316 ---~~G-------~i~~~g~~~~~~~~----------~~~r~~i~~v~---------Q~---------------------  345 (478)
                         .+|       .|.++|.++...+.          +.+|+.++++|         +.                     
T Consensus       573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~  652 (842)
T 2vf7_A          573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV  652 (842)
T ss_dssp             CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred             cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence               356       68899988754332          33343332222         11                     


Q ss_pred             -CCC------------------------Ccc-cHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCccc-cc
Q 048556          346 -PVL------------------------FTS-SIKDNINYGKDG-----ASIAEIMAAAELANAAKFIDSLPQGLDT-MV  393 (478)
Q Consensus       346 -~~l------------------------f~~-ti~eNl~~~~~~-----~~~~~~~~a~~~~~~~~~i~~lp~g~~t-~~  393 (478)
                       -.+                        +.+ ||.||+.+...+     ....+.      ....+.++.+  |+.. .+
T Consensus       653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~------~~~~~~L~~~--gL~~~~l  724 (842)
T 2vf7_A          653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAI------FRALDTLREV--GLGYLRL  724 (842)
T ss_dssp             TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHH------HHHHHHHHHT--TCTTSBT
T ss_pred             hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHH------HHHHHHHHHc--CCCcccc
Confidence             111                        122 566665432100     000111      1234566666  6665 46


Q ss_pred             cCCCCCCChHHHHHHHHHHHHcCC---CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEE
Q 048556          394 GEHGTQLSGGQKQRIAIARAILKD---PRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIAV  469 (478)
Q Consensus       394 ~~~g~~LSgGq~Qrl~lARall~~---~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~v  469 (478)
                      ++...+|||||+||++|||+|+++   |++|||||||++||+.+.+.+.+.|+++. +++|||+|||+++.++.||+|++
T Consensus       725 ~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~  804 (842)
T 2vf7_A          725 GQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLD  804 (842)
T ss_dssp             TCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEE
T ss_pred             cCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEE
Confidence            888999999999999999999996   69999999999999999999999998875 57899999999999988999999


Q ss_pred             E------eCCEEee
Q 048556          470 I------HQGKLVE  477 (478)
Q Consensus       470 l------~~G~i~~  477 (478)
                      |      ++|++++
T Consensus       805 L~p~~g~~~G~Iv~  818 (842)
T 2vf7_A          805 IGPGAGEDGGRLVA  818 (842)
T ss_dssp             ECSSSGGGCCSEEE
T ss_pred             ECCCCCCCCCEEEE
Confidence            9      6899874

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.1e-34  Score=303.45  Aligned_cols=181  Identities=15%  Similarity=0.168  Sum_probs=143.5

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCcc-E-EEECCeecCCCCHHHhhcc
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG-E-VLIDGVNLKEFQLKWIRGK  338 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G-~-i~~~g~~~~~~~~~~~r~~  338 (478)
                      ++++|++|+|         .++||++++|++++|+||||||||||+|+|+|++.|++| + |++||.         .++.
T Consensus       119 i~~~nl~~~y---------~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~---------~~~~  180 (460)
T 2npi_A          119 KYIYNLHFML---------EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD---------PQQP  180 (460)
T ss_dssp             HHHHHHHHHH---------HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC---------TTSC
T ss_pred             hhhhhhhehh---------hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC---------ccCC
Confidence            5555666555         269999999999999999999999999999999999999 9 999981         3678


Q ss_pred             eEEEecCCCCCc----ccHHHHHhcCCCC---C-CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 048556          339 IGLVSQEPVLFT----SSIKDNINYGKDG---A-SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAI  410 (478)
Q Consensus       339 i~~v~Q~~~lf~----~ti~eNl~~~~~~---~-~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~l  410 (478)
                      ++|+||++.+|.    .|++||+ ++...   . ..+++.         +.+..+  |++....  ..+||||||||++|
T Consensus       181 i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~---------~ll~~~--gl~~~~~--~~~LSgGq~qrlal  246 (460)
T 2npi_A          181 IFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQ---------PMVKNF--GLERINE--NKDLYLECISQLGQ  246 (460)
T ss_dssp             SSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBC---------CEECCC--CSSSGGG--CHHHHHHHHHHHHH
T ss_pred             eeeeccchhhcccccccchhhhh-cccccccCcchHHHHH---------HHHHHh--CCCcccc--hhhhhHHHHHHHHH
Confidence            999999986543    4899999 75421   0 111111         122222  5555543  78999999999999


Q ss_pred             HHH--HcCCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCch------hhhh-cCE-----EEEEe
Q 048556          411 ARA--ILKDPRI----LLLDE-ATSALDAESERVVQEALDKIMINRTTVIVAHRLS------TVRN-ADL-----IAVIH  471 (478)
Q Consensus       411 ARa--ll~~~~i----lilDE-pts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~------~~~~-~d~-----i~vl~  471 (478)
                      |||  |+.+|++    +|||| ||++||+. .+.+.+.+++.  ++|+|+|+|+.+      .++. ||+     |++|+
T Consensus       247 Ara~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~  323 (460)
T 2npi_A          247 VVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIP  323 (460)
T ss_dssp             HHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEEC
T ss_pred             HHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEe
Confidence            999  9999999    99999 99999999 66777776664  679999999987      5444 999     99999


Q ss_pred             -CCEEe
Q 048556          472 -QGKLV  476 (478)
Q Consensus       472 -~G~i~  476 (478)
                       +|+++
T Consensus       324 k~G~iv  329 (460)
T 2npi_A          324 KLDGVS  329 (460)
T ss_dssp             CCTTCC
T ss_pred             CCCcEE
Confidence             99886

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.97  E-value=1.1e-30  Score=289.67  Aligned_cols=199  Identities=24%  Similarity=0.387  Sum_probs=148.7

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHh-ccC-------CCCcc-------------
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIE-RFY-------DPQAG-------------  318 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~-g~~-------~~~~G-------------  318 (478)
                      .++++|++.        ..|+|+||+|++||++||+|+||||||||++.++ |..       .+..|             
T Consensus       629 ~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~  700 (972)
T 2r6f_A          629 WLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK  700 (972)
T ss_dssp             EEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred             EEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence            488888752        3699999999999999999999999999999864 221       11233             


Q ss_pred             EEEECCeecCCCC---H-------HHhh---------cceEEEecCCCC-------------------------------
Q 048556          319 EVLIDGVNLKEFQ---L-------KWIR---------GKIGLVSQEPVL-------------------------------  348 (478)
Q Consensus       319 ~i~~~g~~~~~~~---~-------~~~r---------~~i~~v~Q~~~l-------------------------------  348 (478)
                      .|.+||.++...+   +       +.+|         +.++|+||...+                               
T Consensus       701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce  780 (972)
T 2r6f_A          701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE  780 (972)
T ss_dssp             EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred             EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence            4788888874321   1       1111         335777775321                               


Q ss_pred             ---------------C---------cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-cccCCCCCCChH
Q 048556          349 ---------------F---------TSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDT-MVGEHGTQLSGG  403 (478)
Q Consensus       349 ---------------f---------~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t-~~~~~g~~LSgG  403 (478)
                                     |         .-|+.||+.+....   .++.+      ..+.++.+  |+.. .+++...+||||
T Consensus       781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~---~~~~~------~~~~L~~~--gL~~~~l~~~~~~LSGG  849 (972)
T 2r6f_A          781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASI---PKIKR------KLETLYDV--GLGYMKLGQPATTLSGG  849 (972)
T ss_dssp             TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSC---HHHHH------HHHHHHHT--TCSSSBTTCCGGGCCHH
T ss_pred             ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcc---hhHHH------HHHHHHHc--CCCcccccCchhhCCHH
Confidence                           0         11455555543311   11111      23456666  6766 678889999999


Q ss_pred             HHHHHHHHHHHcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEE------eCC
Q 048556          404 QKQRIAIARAILKDP---RILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIAVI------HQG  473 (478)
Q Consensus       404 q~Qrl~lARall~~~---~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl------~~G  473 (478)
                      ||||++|||||+++|   ++|||||||++||+.+.+.+++.|+++. +++|+|+|||+++.++.||+|++|      ++|
T Consensus       850 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G  929 (972)
T 2r6f_A          850 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGG  929 (972)
T ss_dssp             HHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCC
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCC
Confidence            999999999999875   9999999999999999999999998875 578999999999999889999999      689


Q ss_pred             EEee
Q 048556          474 KLVE  477 (478)
Q Consensus       474 ~i~~  477 (478)
                      ++++
T Consensus       930 ~Iv~  933 (972)
T 2r6f_A          930 QIVA  933 (972)
T ss_dssp             SEEE
T ss_pred             EEEE
Confidence            9874

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.96  E-value=1e-29  Score=255.27  Aligned_cols=194  Identities=20%  Similarity=0.267  Sum_probs=142.3

Q ss_pred             cceeeecCCCEEEEEcCCCCChHHHHHHHhccC-----------------------------------------------
Q 048556          281 GFSLSIPSGTTAALVGQSGSGKSTVISLIERFY-----------------------------------------------  313 (478)
Q Consensus       281 ~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-----------------------------------------------  313 (478)
                      ++++++.+| +++|+||||||||||+++|..+.                                               
T Consensus        17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r   95 (322)
T 1e69_A           17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVAR   95 (322)
T ss_dssp             CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEE
T ss_pred             CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEE
Confidence            578899999 99999999999999999998442                                               


Q ss_pred             ---CCCccEEEECCeecCCCCHHHhhcceEEEecCCCCC-cccHHHHHhcCCCC---------------CCHHHHHHHHH
Q 048556          314 ---DPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLF-TSSIKDNINYGKDG---------------ASIAEIMAAAE  374 (478)
Q Consensus       314 ---~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf-~~ti~eNl~~~~~~---------------~~~~~~~~a~~  374 (478)
                         .+.+|++++||.++...+..++.+.+++.||+..++ .|++.+|+......               .+.+++.+...
T Consensus        96 ~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~~  175 (322)
T 1e69_A           96 ELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESFN  175 (322)
T ss_dssp             EEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHHH
T ss_pred             EEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence               344578999999986656666777889999988766 78999998753211               01112222211


Q ss_pred             Hh------------cH-HHHHHhCCCCcccccc------CCCCCCChHHHHHHHHHHHHc----CCCCEEEEeCCCCCCC
Q 048556          375 LA------------NA-AKFIDSLPQGLDTMVG------EHGTQLSGGQKQRIAIARAIL----KDPRILLLDEATSALD  431 (478)
Q Consensus       375 ~~------------~~-~~~i~~lp~g~~t~~~------~~g~~LSgGq~Qrl~lARall----~~~~ililDEpts~LD  431 (478)
                      ..            .+ .+....++.|+++.++      .....||||||||++|||||+    ++|+++||||||++||
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD  255 (322)
T 1e69_A          176 RFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLD  255 (322)
T ss_dssp             HHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCC
T ss_pred             HHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCC
Confidence            10            00 0011235556665433      245799999999999999996    7899999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEE--EEEeCCEE
Q 048556          432 AESERVVQEALDKIMINRTTVIVAHRLSTVRNADLI--AVIHQGKL  475 (478)
Q Consensus       432 ~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i--~vl~~G~i  475 (478)
                      +.+.+.+.+.|+++.+++|+|++||+++.++.||++  ++|++|+.
T Consensus       256 ~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s  301 (322)
T 1e69_A          256 DYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVS  301 (322)
T ss_dssp             HHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCE
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEE
Confidence            999999999999886678999999998888889987  88888864

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.95  E-value=6.6e-31  Score=247.42  Aligned_cols=158  Identities=17%  Similarity=0.194  Sum_probs=102.8

Q ss_pred             CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHH
Q 048556          276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKD  355 (478)
Q Consensus       276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~e  355 (478)
                      +++|+|+    ++||+++|+||||||||||+++|+|+ +|++|+|.  +.++.. +...+++.++|+||++       +|
T Consensus        13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~e   77 (208)
T 3b85_A           13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NE   77 (208)
T ss_dssp             HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC-----------
T ss_pred             HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HH
Confidence            4689985    89999999999999999999999999 99999994  333321 2234578899999987       56


Q ss_pred             HH-hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHH
Q 048556          356 NI-NYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES  434 (478)
Q Consensus       356 Nl-~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~  434 (478)
                      |+ .++.+.  .+.+........+.+.++.   |+             |||||++|||||+.+|++|||||||++    +
T Consensus        78 nl~~~~~~~--~~~~~~~~~~~~~~~~l~~---gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~----~  135 (208)
T 3b85_A           78 KIDPYLRPL--HDALRDMVEPEVIPKLMEA---GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT----T  135 (208)
T ss_dssp             --CTTTHHH--HHHHTTTSCTTHHHHHHHT---TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC----C
T ss_pred             HHHHHHHHH--HHHHHHhccHHHHHHHHHh---CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc----c
Confidence            66 332110  0000000001112233322   22             999999999999999999999999999    8


Q ss_pred             HHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCE
Q 048556          435 ERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGK  474 (478)
Q Consensus       435 ~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~  474 (478)
                      ++.+.+.|+++.+++|+| +||+++.++.   +...++|.
T Consensus       136 ~~~l~~~l~~l~~g~tii-vtHd~~~~~~---~~~~~~G~  171 (208)
T 3b85_A          136 PAQMKMFLTRLGFGSKMV-VTGDITQVDL---PGGQKSGL  171 (208)
T ss_dssp             HHHHHHHHTTBCTTCEEE-EEEC---------------CC
T ss_pred             HHHHHHHHHHhcCCCEEE-EECCHHHHhC---cCCCCCcH
Confidence            889999998874568888 9999986654   44556774

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.94  E-value=2.4e-27  Score=241.85  Aligned_cols=83  Identities=25%  Similarity=0.371  Sum_probs=76.6

Q ss_pred             CCCCCCChHHHHHHHHHHHHc------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEE
Q 048556          395 EHGTQLSGGQKQRIAIARAIL------KDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLI  467 (478)
Q Consensus       395 ~~g~~LSgGq~Qrl~lARall------~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i  467 (478)
                      ....+|||||+||++|||||+      .+|++|||||||++||+.+.+.+++.|+++. .++|+|+|||+++..+.||++
T Consensus       275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~  354 (365)
T 3qf7_A          275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRK  354 (365)
T ss_dssp             EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCE
T ss_pred             CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence            456789999999999999999      7999999999999999999999999999875 478999999999998889999


Q ss_pred             EEEeCCEEee
Q 048556          468 AVIHQGKLVE  477 (478)
Q Consensus       468 ~vl~~G~i~~  477 (478)
                      ++|++|++++
T Consensus       355 ~~l~~G~i~~  364 (365)
T 3qf7_A          355 LRITGGVVVN  364 (365)
T ss_dssp             EEEETTEEC-
T ss_pred             EEEECCEEEe
Confidence            9999999986

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.94  E-value=1.7e-27  Score=217.29  Aligned_cols=149  Identities=19%  Similarity=0.237  Sum_probs=108.3

Q ss_pred             cceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCC--CCcccHHHHHh
Q 048556          281 GFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPV--LFTSSIKDNIN  358 (478)
Q Consensus       281 ~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~--lf~~ti~eNl~  358 (478)
                      |+||++++||+++|+||||||||||++++.+-.      ..        .+.+.++   ++++|++.  .+.++..+++.
T Consensus         1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~------~~--------~~~d~~~---g~~~~~~~~~~~~~~~~~~~~   63 (171)
T 4gp7_A            1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPT------EV--------ISSDFCR---GLMSDDENDQTVTGAAFDVLH   63 (171)
T ss_dssp             CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGG------GE--------EEHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred             CccccCCCCEEEEEECCCCCCHHHHHHHHccCC------eE--------EccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence            689999999999999999999999999965321      11        1233344   56777753  23333333321


Q ss_pred             cCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHH----
Q 048556          359 YGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES----  434 (478)
Q Consensus       359 ~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~----  434 (478)
                      .            ..        ...+..|+...+... ...|||||||++||||+..+|++++|||||++||+.+    
T Consensus        64 ~------------~~--------~~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~  122 (171)
T 4gp7_A           64 Y------------IV--------SKRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT  122 (171)
T ss_dssp             H------------HH--------HHHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred             H------------HH--------HHHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence            1            00        011223666555543 4569999999999999999999999999999999994    


Q ss_pred             ------------HHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEE
Q 048556          435 ------------ERVVQEALDKIM-INRTTVIVAHRLSTVRNADLI  467 (478)
Q Consensus       435 ------------~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i  467 (478)
                                  .+.+.+.++++. ++.|+|+|||+++.+..++++
T Consensus       123 ~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~  168 (171)
T 4gp7_A          123 DRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE  168 (171)
T ss_dssp             SCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred             CCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence                        477888876653 478999999999999887765

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.93  E-value=1.1e-27  Score=220.18  Aligned_cols=140  Identities=16%  Similarity=0.212  Sum_probs=104.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHH
Q 048556          291 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIM  370 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~  370 (478)
                      +++|+||||||||||+++|+|++.     |.++|.+..+......++.++|++|++     +..+|+ ++.-        
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~-~~~~--------   62 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKI-FSSK--------   62 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEE-EEET--------
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHH-HHhh--------
Confidence            689999999999999999999985     556776654433224577899999987     222332 1100        


Q ss_pred             HHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH-----HcCCCCEEEEeC--CCCCCCHHHHHHHHHHHH
Q 048556          371 AAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA-----ILKDPRILLLDE--ATSALDAESERVVQEALD  443 (478)
Q Consensus       371 ~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa-----ll~~~~ililDE--pts~LD~~~~~~i~~~l~  443 (478)
                                   ..+  -+..+++.+.+||||||||++||||     ++.+|+++||||  ||++||+...+.+.+.++
T Consensus        63 -------------~~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~  127 (178)
T 1ye8_A           63 -------------FFT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH  127 (178)
T ss_dssp             -------------TCC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred             -------------cCC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHh
Confidence                         000  0135677788999999999999996     999999999999  999999999999999887


Q ss_pred             HhcCCCeEEEEec---Cchhhhh-cCE
Q 048556          444 KIMINRTTVIVAH---RLSTVRN-ADL  466 (478)
Q Consensus       444 ~~~~~~t~i~itH---~~~~~~~-~d~  466 (478)
                      +  .+.|+|+++|   +...+.. ||+
T Consensus       128 ~--~~~~~i~~~H~~h~~~~~~~i~~r  152 (178)
T 1ye8_A          128 D--PNVNVVATIPIRDVHPLVKEIRRL  152 (178)
T ss_dssp             C--TTSEEEEECCSSCCSHHHHHHHTC
T ss_pred             c--CCCeEEEEEccCCCchHHHHHHhc
Confidence            6  4567888885   7777766 776

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.93  E-value=1.3e-29  Score=240.39  Aligned_cols=151  Identities=16%  Similarity=0.155  Sum_probs=105.6

Q ss_pred             cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH-HHhhcceEEEecCCCCCcc----
Q 048556          277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL-KWIRGKIGLVSQEPVLFTS----  351 (478)
Q Consensus       277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~i~~v~Q~~~lf~~----  351 (478)
                      ..|+|+||++++|++++|+||||||||||+++|+|++ |  |+|.+ |.++...+. ...++.++|++|++.+|..    
T Consensus        11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   86 (218)
T 1z6g_A           11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN   86 (218)
T ss_dssp             -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred             ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence            4799999999999999999999999999999999999 6  99999 887654332 2346789999999876643    


Q ss_pred             -------cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH-----HHHHcCCCC
Q 048556          352 -------SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAI-----ARAILKDPR  419 (478)
Q Consensus       352 -------ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~l-----ARall~~~~  419 (478)
                             ++.+| .++.+   .+++.++++.            +....++   .+|||||+||+++     ||+++.+|+
T Consensus        87 ~~~l~~~~~~~~-~~g~~---~~~i~~~l~~------------~~~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~  147 (218)
T 1z6g_A           87 EDFLEYDNYANN-FYGTL---KSEYDKAKEQ------------NKICLFE---MNINGVKQLKKSTHIKNALYIFIKPPS  147 (218)
T ss_dssp             TCEEEEEEETTE-EEEEE---HHHHHHHHHT------------TCEEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSC
T ss_pred             cchhhhhhcccc-cCCCc---HHHHHHHHhC------------CCcEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcC
Confidence                   23333 22222   2333333321            1222332   6799999999999     899999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHhcCCCe
Q 048556          420 ILLLDEATSALDAESERVVQEALDKIMINRT  450 (478)
Q Consensus       420 ililDEpts~LD~~~~~~i~~~l~~~~~~~t  450 (478)
                      +++|||||+++|.+++..+.+.+.+..+++|
T Consensus       148 ~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~  178 (218)
T 1z6g_A          148 TDVLLSRLLTRNTENQEQIQKRMEQLNIELH  178 (218)
T ss_dssp             HHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999877654433

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.93  E-value=4.7e-28  Score=243.61  Aligned_cols=140  Identities=18%  Similarity=0.187  Sum_probs=116.2

Q ss_pred             EEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEE
Q 048556          263 LKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLV  342 (478)
Q Consensus       263 ~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v  342 (478)
                      ++|++| |     .++++++|+++++|+.++|+||||||||||+++|+|+++|++|.|.++|.+.  +....+++.++++
T Consensus       151 ~~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e--~~~~~~~~~i~~~  222 (330)
T 2pt7_A          151 YNLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE--IVFKHHKNYTQLF  222 (330)
T ss_dssp             TTTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC--CCCSSCSSEEEEE
T ss_pred             cCchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec--cccccchhEEEEE
Confidence            556666 5     1489999999999999999999999999999999999999999999998753  2222345556665


Q ss_pred             ecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEE
Q 048556          343 SQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILL  422 (478)
Q Consensus       343 ~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ili  422 (478)
                      ++                                                         |||+||++|||||..+|++++
T Consensus       223 ~g---------------------------------------------------------gg~~~r~~la~aL~~~p~ili  245 (330)
T 2pt7_A          223 FG---------------------------------------------------------GNITSADCLKSCLRMRPDRII  245 (330)
T ss_dssp             CB---------------------------------------------------------TTBCHHHHHHHHTTSCCSEEE
T ss_pred             eC---------------------------------------------------------CChhHHHHHHHHhhhCCCEEE
Confidence            40                                                         899999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHhcCC-CeEEEEecCchhhhhcCEEEEEeCCE
Q 048556          423 LDEATSALDAESERVVQEALDKIMIN-RTTVIVAHRLSTVRNADLIAVIHQGK  474 (478)
Q Consensus       423 lDEpts~LD~~~~~~i~~~l~~~~~~-~t~i~itH~~~~~~~~d~i~vl~~G~  474 (478)
                      |||||+.       ++.+.|+.+..+ .|+|+++|+++..+.|||+++|++|+
T Consensus       246 ldE~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~  291 (330)
T 2pt7_A          246 LGELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSN  291 (330)
T ss_dssp             ECCCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred             EcCCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCC
Confidence            9999982       345666666555 47999999999888899999998875

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.92  E-value=1.2e-27  Score=246.27  Aligned_cols=167  Identities=18%  Similarity=0.178  Sum_probs=129.9

Q ss_pred             CcccccceeeecCCC--------------------EEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh
Q 048556          276 EQIFNGFSLSIPSGT--------------------TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI  335 (478)
Q Consensus       276 ~~~l~~is~~i~~G~--------------------~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~  335 (478)
                      +.+|+|+||++++|+                    ++||+||||||||||+|+|+|+++|++|+|.++|.+.+       
T Consensus        36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------  108 (413)
T 1tq4_A           36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------  108 (413)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred             HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence            368999999999999                    99999999999999999999999999999999998753       


Q ss_pred             hcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChH--HHHHHHHHHH
Q 048556          336 RGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGG--QKQRIAIARA  413 (478)
Q Consensus       336 r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgG--q~Qrl~lARa  413 (478)
                      |  .++++|++....-|+.||+.++.+..   ++.+.++..++.+        ++..+    . ||||  |+||++||||
T Consensus       109 ~--~~~v~q~~~~~~ltv~D~~g~~~~~~---~~~~~L~~~~L~~--------~~~~~----~-lS~G~~~kqrv~la~a  170 (413)
T 1tq4_A          109 M--ERHPYKHPNIPNVVFWDLPGIGSTNF---PPDTYLEKMKFYE--------YDFFI----I-ISATRFKKNDIDIAKA  170 (413)
T ss_dssp             C--CCEEEECSSCTTEEEEECCCGGGSSC---CHHHHHHHTTGGG--------CSEEE----E-EESSCCCHHHHHHHHH
T ss_pred             e--eEEeccccccCCeeehHhhcccchHH---HHHHHHHHcCCCc--------cCCeE----E-eCCCCccHHHHHHHHH
Confidence            1  27899997544569999988765422   2333333333211        12222    2 9999  9999999999


Q ss_pred             HcC----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc----------CCCeEEEEecCchh--hhh-cCEE
Q 048556          414 ILK----------DPRILLLDEATSALDAESERVVQEALDKIM----------INRTTVIVAHRLST--VRN-ADLI  467 (478)
Q Consensus       414 ll~----------~~~ililDEpts~LD~~~~~~i~~~l~~~~----------~~~t~i~itH~~~~--~~~-~d~i  467 (478)
                      |.+          +|++++|||||++||+.+++++++.|++..          ...++++.||.++.  ++. ||+|
T Consensus       171 L~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I  247 (413)
T 1tq4_A          171 ISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL  247 (413)
T ss_dssp             HHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred             HHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence            999          999999999999999999999999988762          12567789999876  555 6665

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.91  E-value=2.4e-26  Score=239.17  Aligned_cols=186  Identities=17%  Similarity=0.163  Sum_probs=148.7

Q ss_pred             ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCe---ecCCCC----
Q 048556          259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGV---NLKEFQ----  331 (478)
Q Consensus       259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~---~~~~~~----  331 (478)
                      ..++++|+++.|+.  +.++|+++ |+|++||+++|+||||||||||+++|+|+++|+.|.|.++|.   ++.++.    
T Consensus       130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~  206 (438)
T 2dpy_A          130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL  206 (438)
T ss_dssp             CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred             CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence            45889999999962  35799999 999999999999999999999999999999999999999998   555432    


Q ss_pred             -HHHhhcceEEEecC-CCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 048556          332 -LKWIRGKIGLVSQE-PVLFT-SSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRI  408 (478)
Q Consensus       332 -~~~~r~~i~~v~Q~-~~lf~-~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl  408 (478)
                       ...+++.++|++|+ ..++. -|+.+|+.+..      +...            .........+ +...+||+|| ||+
T Consensus       207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a------e~~~------------~~~~~v~~~l-d~l~~lS~g~-qrv  266 (438)
T 2dpy_A          207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIA------EDFR------------DRGQHVLLIM-DSLTRYAMAQ-REI  266 (438)
T ss_dssp             HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH------HHHH------------TTTCEEEEEE-ECHHHHHHHH-HHH
T ss_pred             cccccCceEEEEECCCCCHHHHHHHHHHHHHHH------HHHH------------hCCCCHHHHH-HhHHHHHHHH-HHH
Confidence             35578899999995 44444 48999987631      1110            0000011111 3367899999 999


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-----CC-----eEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          409 AIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI-----NR-----TTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       409 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-----~~-----t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      +||   +.+|++      |++||+.+...+.+.+.++.+     ++     |++++||+++ ...||++++|.+|+++.
T Consensus       267 slA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl  335 (438)
T 2dpy_A          267 ALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVL  335 (438)
T ss_dssp             HHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEE
T ss_pred             HHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEE
Confidence            999   889998      999999999999999988754     43     9999999999 66799999999999975

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.90  E-value=8.1e-26  Score=224.43  Aligned_cols=176  Identities=17%  Similarity=0.218  Sum_probs=128.8

Q ss_pred             cccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH----HHh--hcceEEEecCCC-CCcc
Q 048556          279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL----KWI--RGKIGLVSQEPV-LFTS  351 (478)
Q Consensus       279 l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~----~~~--r~~i~~v~Q~~~-lf~~  351 (478)
                      +.++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+.....    ..+  |..++|++|++. +++.
T Consensus        90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~  169 (302)
T 3b9q_A           90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA  169 (302)
T ss_dssp             CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred             ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence            356899999999999999999999999999999999999999999999866431    223  457999999998 7765


Q ss_pred             -cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCC--EEEEeCCCC
Q 048556          352 -SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATS  428 (478)
Q Consensus       352 -ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~--ililDEpts  428 (478)
                       |++||+.++.....+.            ..++..  |+.........+||   +||++||||+..+|+  +|+|| ||+
T Consensus       170 ~~v~e~l~~~~~~~~d~------------~lldt~--gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pts  231 (302)
T 3b9q_A          170 TVLSKAVKRGKEEGYDV------------VLCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNT  231 (302)
T ss_dssp             HHHHHHHHHHHHTTCSE------------EEECCC--CCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGG
T ss_pred             HHHHHHHHHHHHcCCcc------------hHHhcC--CCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCC
Confidence             9999997642110000            011111  33222222334588   999999999999999  99999 999


Q ss_pred             CCCHHHHHHHHHHHHHhcCCCeEEEEec---------Cchhhhh-cCEEEEEeCCEEe
Q 048556          429 ALDAESERVVQEALDKIMINRTTVIVAH---------RLSTVRN-ADLIAVIHQGKLV  476 (478)
Q Consensus       429 ~LD~~~~~~i~~~l~~~~~~~t~i~itH---------~~~~~~~-~d~i~vl~~G~i~  476 (478)
                      ++|+.+..   +.+.+ ..+.|+|++||         .++.... .+.|..+..|+.+
T Consensus       232 glD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~  285 (302)
T 3b9q_A          232 GLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV  285 (302)
T ss_dssp             GGGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred             CcCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence            99998653   22222 23689999999         3444433 6899999999654

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.89  E-value=1.8e-26  Score=230.14  Aligned_cols=167  Identities=17%  Similarity=0.233  Sum_probs=123.8

Q ss_pred             CccEEEEeEEEECCCCCCCcccccceee-----------------------ecCCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556          258 RGDIELKDIYFSYPSRPGEQIFNGFSLS-----------------------IPSGTTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       258 ~~~i~~~~v~~~y~~~~~~~~l~~is~~-----------------------i~~G~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      .+.|+++||++.|.     |+++++++.                       +++|+++||+||||||||||+++|+|+++
T Consensus        41 ~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~  115 (312)
T 3aez_A           41 GEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA  115 (312)
T ss_dssp             TCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence            45699999999993     577877765                       89999999999999999999999999999


Q ss_pred             CCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCC-CCCHHHHHHHHHHhcHHHHHHhCCCCccccc
Q 048556          315 PQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKD-GASIAEIMAAAELANAAKFIDSLPQGLDTMV  393 (478)
Q Consensus       315 ~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~-~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~  393 (478)
                      |.+|.                 +.+++|+|++++++.|++||+.+... .....     .....+.+.++.++.|...  
T Consensus       116 ~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~-----~d~~~~~~~L~~l~~~~~~--  171 (312)
T 3aez_A          116 RWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPES-----YNRRALMRFVTSVKSGSDY--  171 (312)
T ss_dssp             TSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGG-----BCHHHHHHHHHHHHTTCSC--
T ss_pred             ccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChH-----HHHHHHHHHHHHhCCCccc--
Confidence            98663                 56999999999998899999976321 11110     0011123344444334431  


Q ss_pred             cCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhh
Q 048556          394 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTV  461 (478)
Q Consensus       394 ~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~  461 (478)
                       .....|||||+||+++|||++.+|+|+|||||++.+|+..     ..+.+..  ..+|+|+|+.+..
T Consensus       172 -~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~--D~~I~V~a~~~~~  231 (312)
T 3aez_A          172 -ACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF--DFSLYVDARIEDI  231 (312)
T ss_dssp             -EEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC--SEEEEEEECHHHH
T ss_pred             -CCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc--CcEEEEECCHHHH
Confidence             1235899999999999999999999999999999998622     1122222  2568888887653

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.89  E-value=2.2e-25  Score=217.98  Aligned_cols=146  Identities=17%  Similarity=0.162  Sum_probs=95.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc-cHHHHHhcCCCCCC---H
Q 048556          291 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYGKDGAS---I  366 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNl~~~~~~~~---~  366 (478)
                      .++|+||||||||||+|+|+|+..|++|+|.++|.++..   ...++.++|++|++.++.. |+.||+.++.....   .
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~   80 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW   80 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence            589999999999999999999999999999999988743   2346789999999998876 99999999864322   2


Q ss_pred             HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc
Q 048556          367 AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM  446 (478)
Q Consensus       367 ~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~  446 (478)
                      +.+.+...    .++...+           ..+|||||+||+++|||++.   +++|||||++||+... .+++.+.   
T Consensus        81 ~~i~~~~~----~~~~~~~-----------~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~-~~l~~L~---  138 (270)
T 3sop_A           81 EPIEKYIN----EQYEKFL-----------KEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDL-EFMKHLS---  138 (270)
T ss_dssp             HHHHHHHH----HHHHHHH-----------HHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHH-HHHHHHH---
T ss_pred             HHHHHHHH----HHHHhhh-----------HHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHH-HHHHHHH---
Confidence            23333222    2222221           24699999999999999875   9999999999999873 3344443   


Q ss_pred             CCCeEEEEecCchhh
Q 048556          447 INRTTVIVAHRLSTV  461 (478)
Q Consensus       447 ~~~t~i~itH~~~~~  461 (478)
                      +..++|+|.|+.+.+
T Consensus       139 ~~~~vI~Vi~K~D~l  153 (270)
T 3sop_A          139 KVVNIIPVIAKADTM  153 (270)
T ss_dssp             TTSEEEEEETTGGGS
T ss_pred             hcCcEEEEEeccccC
Confidence            348999999988765

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.88  E-value=1.5e-25  Score=210.38  Aligned_cols=169  Identities=17%  Similarity=0.135  Sum_probs=110.4

Q ss_pred             CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc-cHH
Q 048556          276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIK  354 (478)
Q Consensus       276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~  354 (478)
                      .++++|  .++++||+++|+||||||||||+++|+|+++.    +.+++.....-.....++.++|++|++.+|.. |+.
T Consensus         9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~   82 (207)
T 1znw_A            9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ   82 (207)
T ss_dssp             ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred             CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence            468888  79999999999999999999999999999963    44544221111112235779999999988865 777


Q ss_pred             HHHhcCC---C-----CCCHHHHHHH----------HHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556          355 DNINYGK---D-----GASIAEIMAA----------AELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK  416 (478)
Q Consensus       355 eNl~~~~---~-----~~~~~~~~~a----------~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~  416 (478)
                      +|+....   .     ..+.+++.+.          ++..++.+.....|           ..||           ||+.
T Consensus        83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~lS-----------~l~~  140 (207)
T 1znw_A           83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----------EAVT-----------VFLA  140 (207)
T ss_dssp             TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----------TSEE-----------EEEE
T ss_pred             CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----------CcEE-----------EEEE
Confidence            7763210   0     0112222222          22334433333333           2344           8999


Q ss_pred             CCCEEEEeCCCCCC----CHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeC
Q 048556          417 DPRILLLDEATSAL----DAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQ  472 (478)
Q Consensus       417 ~~~ililDEpts~L----D~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~  472 (478)
                      +|++++|||||+++    |+..++.+.+.++++.  .+.|+|+|||+++.+.. ||+|++|..
T Consensus       141 ~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~~  203 (207)
T 1znw_A          141 PPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGTA  203 (207)
T ss_dssp             CSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC---
T ss_pred             CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhcc
Confidence            99999999999998    7779999999998875  36899999999998876 999999853

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.88  E-value=1.1e-24  Score=220.58  Aligned_cols=175  Identities=18%  Similarity=0.230  Sum_probs=129.5

Q ss_pred             ccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC----HHHh--hcceEEEecCCC-CCcc-
Q 048556          280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ----LKWI--RGKIGLVSQEPV-LFTS-  351 (478)
Q Consensus       280 ~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~----~~~~--r~~i~~v~Q~~~-lf~~-  351 (478)
                      .++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+....    ...+  |..++|++|++. +++. 
T Consensus       148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~  227 (359)
T 2og2_A          148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT  227 (359)
T ss_dssp             CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred             CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence            3588999999999999999999999999999999999999999999986542    1222  467999999998 7765 


Q ss_pred             cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCC--EEEEeCCCCC
Q 048556          352 SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSA  429 (478)
Q Consensus       352 ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~--ililDEpts~  429 (478)
                      |++||+.++.....+.            ..++..  |+.........+||   +||++||||+..+|+  +|+|| ||++
T Consensus       228 tv~e~l~~~~~~~~d~------------~lldt~--Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttg  289 (359)
T 2og2_A          228 VLSKAVKRGKEEGYDV------------VLCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG  289 (359)
T ss_dssp             HHHHHHHHHHHTTCSE------------EEEECC--CCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGG
T ss_pred             hHHHHHHHHHhCCCHH------------HHHHhc--CCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCC
Confidence            9999998642110000            011111  33222222234588   999999999999999  99999 9999


Q ss_pred             CCHHHHHHHHHHHHHhcCCCeEEEEec---------Cchhhhh-cCEEEEEeCCEEe
Q 048556          430 LDAESERVVQEALDKIMINRTTVIVAH---------RLSTVRN-ADLIAVIHQGKLV  476 (478)
Q Consensus       430 LD~~~~~~i~~~l~~~~~~~t~i~itH---------~~~~~~~-~d~i~vl~~G~i~  476 (478)
                      +|+.+...   .+.+ ..+.|+|++||         .++.... .+.|..+..|+.+
T Consensus       290 lD~~~~~~---~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~  342 (359)
T 2og2_A          290 LNMLPQAR---EFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV  342 (359)
T ss_dssp             GGGHHHHH---HHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred             CCHHHHHH---HHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCCh
Confidence            99986632   2222 23689999999         3444433 6899999998654

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.87  E-value=4.7e-22  Score=201.51  Aligned_cols=74  Identities=22%  Similarity=0.302  Sum_probs=68.6

Q ss_pred             CCChHHHHHHHHHHHHc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEE
Q 048556          399 QLSGGQKQRIAIARAIL---------KDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAV  469 (478)
Q Consensus       399 ~LSgGq~Qrl~lARall---------~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~v  469 (478)
                      .|||||+||++|||+|+         .+|+|||||||||+||+..++.+.+.+.+..  .|+|++|| ++.  .||++++
T Consensus       265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~  339 (359)
T 2o5v_A          265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR  339 (359)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred             hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence            69999999999999999         8999999999999999999999999998864  79999999 444  8999999


Q ss_pred             EeCCEEee
Q 048556          470 IHQGKLVE  477 (478)
Q Consensus       470 l~~G~i~~  477 (478)
                      |++|++++
T Consensus       340 l~~G~i~~  347 (359)
T 2o5v_A          340 AQAGRFTP  347 (359)
T ss_dssp             EETTEEEE
T ss_pred             EECCEEEe
Confidence            99999875

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.86  E-value=9.5e-22  Score=209.48  Aligned_cols=77  Identities=18%  Similarity=0.296  Sum_probs=71.6

Q ss_pred             CCCC-ChHHHHHHHHHHHHcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCC
Q 048556          397 GTQL-SGGQKQRIAIARAILKDP--RILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQG  473 (478)
Q Consensus       397 g~~L-SgGq~Qrl~lARall~~~--~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G  473 (478)
                      ...| ||||+||++||||++.+|  ++|||||||++||+.+...+.+.|+++.+++|||+|||+++.+..||++++|++|
T Consensus       394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~  473 (517)
T 4ad8_A          394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ  473 (517)
T ss_dssp             SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred             HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence            3456 999999999999999999  9999999999999999999999999887789999999999999889999999554

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.86  E-value=5.4e-23  Score=207.77  Aligned_cols=186  Identities=16%  Similarity=0.212  Sum_probs=142.1

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCC-------CCH
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE-------FQL  332 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~-------~~~  332 (478)
                      -++.+|+++.|+.  +..+++++ |+|.+||+++|+||||||||||+++|+|+.+|+.|.|.+.|.+..+       ...
T Consensus        45 ~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~  121 (347)
T 2obl_A           45 PLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ  121 (347)
T ss_dssp             STTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred             CeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence            4788999999962  35799999 9999999999999999999999999999999999999998875321       122


Q ss_pred             HHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcccc-ccCCCCCCChHHHHHHHHH
Q 048556          333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTM-VGEHGTQLSGGQKQRIAIA  411 (478)
Q Consensus       333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~-~~~~g~~LSgGq~Qrl~lA  411 (478)
                      ..+++.+.+++|.+.                ...+++..+.....+.++...  .|.+.. +-+...+||+|| ||+++|
T Consensus       122 ~~~~~~v~~~~~~~~----------------~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la  182 (347)
T 2obl_A          122 STLSKCVLVVTTSDR----------------PALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA  182 (347)
T ss_dssp             HHHTTEEEEEECTTS----------------CHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH
T ss_pred             hhhhceEEEEECCCC----------------CHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH
Confidence            334555677766431                112344444444455555433  233321 124567899999 999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--C-CC-----eEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          412 RAILKDPRILLLDEATSALDAESERVVQEALDKIM--I-NR-----TTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~-~~-----t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                         +.+|++      |+|+|+.....+.+.+++..  + +.     |++++||+++ ...||+++++.+|+|+.
T Consensus       183 ---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl  246 (347)
T 2obl_A          183 ---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVL  246 (347)
T ss_dssp             ---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEB
T ss_pred             ---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEE
Confidence               688887      99999999999999998875  2 55     8999999998 55699999999999975

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=99.85  E-value=1.6e-24  Score=197.36  Aligned_cols=134  Identities=19%  Similarity=0.188  Sum_probs=97.8

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccCCCC---ccEEEECCeecCCCC---HHHhh-cceE----EEecCCCCCcccHHHHHh
Q 048556          290 TTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGVNLKEFQ---LKWIR-GKIG----LVSQEPVLFTSSIKDNIN  358 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~---~~~~r-~~i~----~v~Q~~~lf~~ti~eNl~  358 (478)
                      ++++|+|+||||||||+++|+|+++|+   .|.|.+||.++.+++   .+.+| ++++    +++|++.+|   +++   
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~---   76 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR---   76 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence            689999999999999999999999998   899999999988776   67777 4788    899999887   111   


Q ss_pred             cCCCCCCHHHHHHHHHHhcHHHHHHh-CCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEE-------EEeCCCCC-
Q 048556          359 YGKDGASIAEIMAAAELANAAKFIDS-LPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRIL-------LLDEATSA-  429 (478)
Q Consensus       359 ~~~~~~~~~~~~~a~~~~~~~~~i~~-lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~il-------ilDEpts~-  429 (478)
                       +     +++.     .+++++++.. +| |+||.++|+   |||||+|||+||||++++|++.       +=|.|... 
T Consensus        77 -~-----~~~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~  141 (171)
T 2f1r_A           77 -V-----SEEE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGH  141 (171)
T ss_dssp             -C-----CHHH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSS
T ss_pred             -C-----Chhh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccCccceEEEEecCCcccC
Confidence             1     1221     6789999999 99 999999995   9999999999999999999873       22444212 


Q ss_pred             --CCHHHHHHHHHHHHH
Q 048556          430 --LDAESERVVQEALDK  444 (478)
Q Consensus       430 --LD~~~~~~i~~~l~~  444 (478)
                        +|....+.+.+.|.+
T Consensus       142 ~~f~~~~~~~~a~~i~~  158 (171)
T 2f1r_A          142 KWFRRDEVERIAEFILS  158 (171)
T ss_dssp             CEECTTCHHHHHHHHHH
T ss_pred             cccCcccHHHHHHHHHH
Confidence              334444566666543

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.85  E-value=1.6e-22  Score=196.77  Aligned_cols=131  Identities=18%  Similarity=0.208  Sum_probs=101.8

Q ss_pred             cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCC-ccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHH
Q 048556          277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ-AGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKD  355 (478)
Q Consensus       277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~-~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~e  355 (478)
                      ++|+++|  +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..+.    +..+++++|.          
T Consensus        15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~----------   78 (261)
T 2eyu_A           15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQR----------   78 (261)
T ss_dssp             THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEE----------
T ss_pred             HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHH----------
Confidence            4899999  9999999999999999999999999999998 999999998764321    2223333331          


Q ss_pred             HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHH
Q 048556          356 NINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE  435 (478)
Q Consensus       356 Nl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~  435 (478)
                                                    +-|++.      ..|      |++|||||..+|+++++||||   |+++.
T Consensus        79 ------------------------------~~gl~~------~~l------~~~la~aL~~~p~illlDEp~---D~~~~  113 (261)
T 2eyu_A           79 ------------------------------EVGEDT------KSF------ADALRAALREDPDVIFVGEMR---DLETV  113 (261)
T ss_dssp             ------------------------------EBTTTB------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHH
T ss_pred             ------------------------------HhCCCH------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHH
Confidence                                          112221      222      899999999999999999999   98886


Q ss_pred             HHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEe
Q 048556          436 RVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIH  471 (478)
Q Consensus       436 ~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~  471 (478)
                      ..+.+   ....+.++++++|+.+....+||+++|.
T Consensus       114 ~~~l~---~~~~g~~vl~t~H~~~~~~~~dri~~l~  146 (261)
T 2eyu_A          114 ETALR---AAETGHLVFGTLHTNTAIDTIHRIVDIF  146 (261)
T ss_dssp             HHHHH---HHHTTCEEEEEECCSSHHHHHHHHHHTS
T ss_pred             HHHHH---HHccCCEEEEEeCcchHHHHHHHHhhhc
Confidence            65444   3345789999999998777789887664

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.85  E-value=6.7e-24  Score=196.56  Aligned_cols=157  Identities=17%  Similarity=0.218  Sum_probs=116.5

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHH
Q 048556          289 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAE  368 (478)
Q Consensus       289 G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~  368 (478)
                      |++++|+||||||||||+++|+|+++ ++| |.++|.+..+++  .++++++|++|+.   .++ ++|+.......+   
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~~~~~---   69 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVGLEPP---   69 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECCCCCC---
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcccccCC---
Confidence            78999999999999999999999999 899 999998886554  4688999999986   332 223221110000   


Q ss_pred             HHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHH-HHHH---HHcCCCCEEEEeC--CCCCCCHHHHHHHHHHH
Q 048556          369 IMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRI-AIAR---AILKDPRILLLDE--ATSALDAESERVVQEAL  442 (478)
Q Consensus       369 ~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl-~lAR---all~~~~ililDE--pts~LD~~~~~~i~~~l  442 (478)
                                       +...+..+++.+..+|+|||+++ ++++   |+.++|+++||||  |+..+|+...+.+.+.+
T Consensus        70 -----------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l  132 (189)
T 2i3b_A           70 -----------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTL  132 (189)
T ss_dssp             -----------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHH
T ss_pred             -----------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHH
Confidence                             01134478888999999999998 5566   6899999999999  89989998877777776


Q ss_pred             HHhcCCCeEEE----EecCchhhhhcCEEEEEeCCEEee
Q 048556          443 DKIMINRTTVI----VAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       443 ~~~~~~~t~i~----itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      ..   .+++|+    |+|+.+ ...+|+|..+++|+|++
T Consensus       133 ~~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~  167 (189)
T 2i3b_A          133 ST---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFN  167 (189)
T ss_dssp             HC---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEE
T ss_pred             hC---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEE
Confidence            53   345553    349875 34567777777777764

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.85  E-value=1.2e-21  Score=193.72  Aligned_cols=181  Identities=13%  Similarity=0.098  Sum_probs=122.0

Q ss_pred             cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCcc-EEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHH
Q 048556          277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG-EVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKD  355 (478)
Q Consensus       277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G-~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~e  355 (478)
                      ++|+++++.+++|++++|+||||||||||++.++|...|++| .|.+.+.+   .+..++++++..+.|+..+   +..+
T Consensus        23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~   96 (296)
T 1cr0_A           23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD   96 (296)
T ss_dssp             TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred             HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence            589999999999999999999999999999999999999878 77664433   3455566555555554322   2233


Q ss_pred             HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHH-HHHHHHHHHHcCCCCEEEEeCCCC---C--
Q 048556          356 NINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQ-KQRIAIARAILKDPRILLLDEATS---A--  429 (478)
Q Consensus       356 Nl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq-~Qrl~lARall~~~~ililDEpts---~--  429 (478)
                      |+..+.  .+.++..++.     .+.+...+  +  .+.+....+|.+| +||+. |+++..+|+++|+||||+   +  
T Consensus        97 ~l~~~~--~~~~~~~~~~-----~~~l~~~~--l--~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~  164 (296)
T 1cr0_A           97 SLKREI--IENGKFDQWF-----DELFGNDT--F--HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASG  164 (296)
T ss_dssp             HHHHHH--HHHTHHHHHH-----HHHHSSSC--E--EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-------
T ss_pred             ccccCC--CCHHHHHHHH-----HHHhccCC--E--EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCC
Confidence            443321  1122222211     12222222  2  1333445789999 66666 999999999999999999   4  


Q ss_pred             -CCH-HHHHHHHHHHHHhcC--CCeEEEEecCc--h--------------------hhh-hcCEEEEEeCCEE
Q 048556          430 -LDA-ESERVVQEALDKIMI--NRTTVIVAHRL--S--------------------TVR-NADLIAVIHQGKL  475 (478)
Q Consensus       430 -LD~-~~~~~i~~~l~~~~~--~~t~i~itH~~--~--------------------~~~-~~d~i~vl~~G~i  475 (478)
                       +|. .....+.+.|+++.+  ++|+|++||..  +                    .+. .||+|++|++|+.
T Consensus       165 ~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~  237 (296)
T 1cr0_A          165 ESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ  237 (296)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence             455 566778888887742  78999999995  4                    454 4999999998864

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.85  E-value=1.1e-20  Score=190.67  Aligned_cols=79  Identities=28%  Similarity=0.399  Sum_probs=70.2

Q ss_pred             CCCCCChHHHH------HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEE
Q 048556          396 HGTQLSGGQKQ------RIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIA  468 (478)
Q Consensus       396 ~g~~LSgGq~Q------rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~  468 (478)
                      ....|||||||      |+++|||++.+|++|||||||++||+.....+.+.|+++. .++|+|+|||+.+....||+++
T Consensus       245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~  324 (339)
T 3qkt_A          245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVI  324 (339)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEE
T ss_pred             ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEE
Confidence            45789999999      6788899999999999999999999999999999998864 4679999999988777799999


Q ss_pred             EEe--CCE
Q 048556          469 VIH--QGK  474 (478)
Q Consensus       469 vl~--~G~  474 (478)
                      +|+  +|.
T Consensus       325 ~l~~~~g~  332 (339)
T 3qkt_A          325 RISLENGS  332 (339)
T ss_dssp             EEEEETTE
T ss_pred             EEEecCCc
Confidence            984  564

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.84  E-value=3.4e-23  Score=221.03  Aligned_cols=167  Identities=15%  Similarity=0.151  Sum_probs=119.6

Q ss_pred             CCccccccee-eecCCCEEEEEcCCCCChHHHHHH--HhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc
Q 048556          275 GEQIFNGFSL-SIPSGTTAALVGQSGSGKSTVISL--IERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS  351 (478)
Q Consensus       275 ~~~~l~~is~-~i~~G~~~~ivG~sGsGKSTL~~l--l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~  351 (478)
                      +.++|+++|+ .+++|++++|+||||||||||++.  +.|+++|++|.|+++|.+. ..+....++.++|++|++...  
T Consensus        24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~--  100 (525)
T 1tf7_A           24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDE--  100 (525)
T ss_dssp             CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHT--
T ss_pred             CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhcc--
Confidence            3579999999 999999999999999999999999  7899999999999999873 223344567899999986521  


Q ss_pred             cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCC--
Q 048556          352 SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA--  429 (478)
Q Consensus       352 ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~--  429 (478)
                         +|+.+...... ++.+++++..++.+.....           ...||||             +|++++|||||+.  
T Consensus       101 ---~~l~~~~~~~~-~~~~~~l~~~~l~~~~~~~-----------~~~LS~g-------------~~~~lilDe~t~~~~  152 (525)
T 1tf7_A          101 ---GKLFILDASPD-PEGQEVVGGFDLSALIERI-----------NYAIQKY-------------RARRVSIDSVTSVFQ  152 (525)
T ss_dssp             ---TSEEEEECCCC-SSCCSCCSSHHHHHHHHHH-----------HHHHHHH-------------TCSEEEEECSTTTST
T ss_pred             ---CcEEEEecCcc-cchhhhhcccCHHHHHHHH-----------HHHHHHc-------------CCCEEEECCHHHHHH
Confidence               11211110000 0000111112222222111           2345555             5889999999984  


Q ss_pred             ---CCHHHHHHHHHHHHHhc-CCCeEEEEecCchhh---------hh-cCEEEEEeC
Q 048556          430 ---LDAESERVVQEALDKIM-INRTTVIVAHRLSTV---------RN-ADLIAVIHQ  472 (478)
Q Consensus       430 ---LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~---------~~-~d~i~vl~~  472 (478)
                         +|+...+.+++.++.+. .++|+|++||+++.+         +. ||+|++|++
T Consensus       153 ~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~  209 (525)
T 1tf7_A          153 QYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN  209 (525)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred             hcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence               68999999999998875 478999999999874         55 999999998

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.83  E-value=4.8e-21  Score=217.13  Aligned_cols=165  Identities=17%  Similarity=0.159  Sum_probs=121.1

Q ss_pred             ccEEEEe-----EEEECCCCCCCcccccceeeecC-------CCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCee
Q 048556          259 GDIELKD-----IYFSYPSRPGEQIFNGFSLSIPS-------GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVN  326 (478)
Q Consensus       259 ~~i~~~~-----v~~~y~~~~~~~~l~~is~~i~~-------G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~  326 (478)
                      ..|+++|     |++.|++  +.++++|++|++++       |++++|+||||||||||+|.+ |++.+           
T Consensus       749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-----------  814 (1022)
T 2o8b_B          749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-----------  814 (1022)
T ss_dssp             CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred             ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence            3599999     9999953  25799999999987       999999999999999999999 99864           


Q ss_pred             cCCCCHHHhhcceE-EEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556          327 LKEFQLKWIRGKIG-LVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK  405 (478)
Q Consensus       327 ~~~~~~~~~r~~i~-~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~  405 (478)
                               ..++| ||||++.  .-|+.||+...               .++.+.+.           .+..++|++++
T Consensus       815 ---------~aqiG~~Vpq~~~--~l~v~d~I~~r---------------ig~~d~~~-----------~~~stf~~em~  857 (1022)
T 2o8b_B          815 ---------MAQMGCYVPAEVC--RLTPIDRVFTR---------------LGASDRIM-----------SGESTFFVELS  857 (1022)
T ss_dssp             ---------HHTTTCCEESSEE--EECCCSBEEEE---------------CC--------------------CHHHHHHH
T ss_pred             ---------HhheeEEeccCcC--CCCHHHHHHHH---------------cCCHHHHh-----------hchhhhHHHHH
Confidence                     24566 9999873  44666666321               01111111           12246777776


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHH-HHHHHHHHHhc-C-CCeEEEEecCchhhhh-cCEEEEEeCCEEe
Q 048556          406 QRIAIARAILKDPRILLLDEATSALDAESE-RVVQEALDKIM-I-NRTTVIVAHRLSTVRN-ADLIAVIHQGKLV  476 (478)
Q Consensus       406 Qrl~lARall~~~~ililDEpts~LD~~~~-~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~vl~~G~i~  476 (478)
                      + +++|++++.+|+++||||||+|+|+... ..+++.++.+. + ++|+|++||+++.+.. +|++.++ +|++.
T Consensus       858 ~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~  930 (1022)
T 2o8b_B          858 E-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA  930 (1022)
T ss_dssp             H-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred             H-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence            5 9999999999999999999999999874 55677777764 3 7899999999998876 8998886 47765

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=99.82  E-value=1.3e-23  Score=214.55  Aligned_cols=175  Identities=14%  Similarity=0.176  Sum_probs=141.8

Q ss_pred             cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCC-ccEEEECCeecCCCCHHHhhcceEEEec-----CCCCCc
Q 048556          277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ-AGEVLIDGVNLKEFQLKWIRGKIGLVSQ-----EPVLFT  350 (478)
Q Consensus       277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~-~G~i~~~g~~~~~~~~~~~r~~i~~v~Q-----~~~lf~  350 (478)
                      ++|++++  +++|+.++|+||||||||||+++|+|+++|+ +|+|.+.|.++. +   .+++.+++|+|     ++..|.
T Consensus       126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~  199 (372)
T 2ewv_A          126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA  199 (372)
T ss_dssp             SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred             HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence            3566655  8999999999999999999999999999997 899987776654 2   25778999999     888999


Q ss_pred             ccHHHHHhcCCCCC-------CHHHHHHHHHHhcH-----------------HHHH------------HhCCCCcccccc
Q 048556          351 SSIKDNINYGKDGA-------SIAEIMAAAELANA-----------------AKFI------------DSLPQGLDTMVG  394 (478)
Q Consensus       351 ~ti~eNl~~~~~~~-------~~~~~~~a~~~~~~-----------------~~~i------------~~lp~g~~t~~~  394 (478)
                      +++++|++. .|+.       +.+.++.+++.+..                 ...+            ..+|+++++.++
T Consensus       200 ~~l~~~L~~-~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~  278 (372)
T 2ewv_A          200 DALRAALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS  278 (372)
T ss_dssp             HHHHHHTTS-CCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEE
T ss_pred             HHHHHHhhh-CcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEE
Confidence            999999997 4554       66667666665432                 1221            124678999999


Q ss_pred             CCCCCCChHHHHHHHHHHHHcCCCCE--EEEeCCCCCCCHH----H-----HHHHHHHHHHhcCCCeEEEEecCchh
Q 048556          395 EHGTQLSGGQKQRIAIARAILKDPRI--LLLDEATSALDAE----S-----ERVVQEALDKIMINRTTVIVAHRLST  460 (478)
Q Consensus       395 ~~g~~LSgGq~Qrl~lARall~~~~i--lilDEpts~LD~~----~-----~~~i~~~l~~~~~~~t~i~itH~~~~  460 (478)
                      +++..+|+|  ||+++||+++.+|++  +|+||+|++||..    +     +..+.+.+....+++|.+.++||++.
T Consensus       279 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~  353 (372)
T 2ewv_A          279 QRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP  353 (372)
T ss_dssp             EEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred             EEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence            999899999  899999999999999  9999999999965    2     33466667777789999999999874

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.82  E-value=1.6e-20  Score=200.44  Aligned_cols=153  Identities=16%  Similarity=0.076  Sum_probs=119.1

Q ss_pred             eeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCC
Q 048556          283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKD  362 (478)
Q Consensus       283 s~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~  362 (478)
                      +..+++|++++|+||||||||||++.++|...|. |+                 +.+.+++|++.   .++++|..... 
T Consensus       275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~~---~~l~~~~~~~g-  332 (525)
T 1tf7_A          275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEESR---AQLLRNAYSWG-  332 (525)
T ss_dssp             TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSCH---HHHHHHHHTTS-
T ss_pred             CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCCH---HHHHHHHHHcC-
Confidence            4589999999999999999999999999999885 54                 12455666652   35555543211 


Q ss_pred             CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH-----HHHH
Q 048556          363 GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE-----SERV  437 (478)
Q Consensus       363 ~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~-----~~~~  437 (478)
                       .+.++            +. .  .|+..........|||||+||+++||++..+|+++|+| ||++||..     ..+.
T Consensus       333 -~~~~~------------~~-~--~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~  395 (525)
T 1tf7_A          333 -MDFEE------------ME-R--QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQF  395 (525)
T ss_dssp             -CCHHH------------HH-H--TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHH
T ss_pred             -CCHHH------------HH-h--CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHH
Confidence             11111            11 1  14555556667889999999999999999999999999 99999999     8889


Q ss_pred             HHHHHHHhc-CCCeEEEEecCc----------hhhhh-cCEEEEEeCCE
Q 048556          438 VQEALDKIM-INRTTVIVAHRL----------STVRN-ADLIAVIHQGK  474 (478)
Q Consensus       438 i~~~l~~~~-~~~t~i~itH~~----------~~~~~-~d~i~vl~~G~  474 (478)
                      +.+.++.++ .+.|+|+++|+.          ..+.. ||+|++|++|+
T Consensus       396 i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge  444 (525)
T 1tf7_A          396 VIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE  444 (525)
T ss_dssp             HHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred             HHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence            988887765 478999999998          66665 89999999886

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.81  E-value=1.9e-19  Score=187.41  Aligned_cols=73  Identities=19%  Similarity=0.292  Sum_probs=67.7

Q ss_pred             CCChHHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchhhhhcCEEEEEe
Q 048556          399 QLSGGQKQRIAIARAIL----KDPRILLLDEATSALDAESERVVQEALDKIMI-NRTTVIVAHRLSTVRNADLIAVIH  471 (478)
Q Consensus       399 ~LSgGq~Qrl~lARall----~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~~d~i~vl~  471 (478)
                      .||||||||++||++|+    ++|+++||||||++||+.....+.+.|++... +.++|+|||+...+..||+++++.
T Consensus       333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~  410 (430)
T 1w1w_A          333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY  410 (430)
T ss_dssp             GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred             cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence            49999999999999999    68999999999999999999999999988753 679999999988888899999985

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=99.80  E-value=9e-24  Score=197.17  Aligned_cols=158  Identities=18%  Similarity=0.283  Sum_probs=120.6

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccCC-------------CCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccH
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFYD-------------PQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSI  353 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~-------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti  353 (478)
                      ++|++++|+||||||||||+++|+|+++             |..|+  ++|.++..++.+++++.+   +|++++|.+++
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~   76 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEF   76 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeee
Confidence            5899999999999999999999999986             78898  589998888999898875   79999999999


Q ss_pred             HHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH-HHcCCCCEEEEeCCCCCCCH
Q 048556          354 KDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR-AILKDPRILLLDEATSALDA  432 (478)
Q Consensus       354 ~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lAR-all~~~~ililDEpts~LD~  432 (478)
                      .+|+ +|.   +.++++++++..... ..+..|+|+++....           ++ .|| +++.+|++++|||+|+++|.
T Consensus        77 ~~n~-~g~---~~~~i~~~~~~~~~~-~~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~  139 (198)
T 1lvg_A           77 SGNL-YGT---SKEAVRAVQAMNRIC-VLDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNT  139 (198)
T ss_dssp             TTEE-EEE---EHHHHHHHHHTTCEE-EEECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTC
T ss_pred             cCcc-CCC---CHHHHHHHHHcCCcE-EEECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCC
Confidence            9998 664   567777776542110 011234466554321           12 567 89999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeC
Q 048556          433 ESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQ  472 (478)
Q Consensus       433 ~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~  472 (478)
                      ++++.|.+.|.+..++   +.++|  +. ..+|+|+|+++
T Consensus       140 ~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~  173 (198)
T 1lvg_A          140 ETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD  173 (198)
T ss_dssp             SCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred             CCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence            9999999999776543   34567  33 77999988764

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.80  E-value=1.7e-21  Score=187.60  Aligned_cols=152  Identities=11%  Similarity=0.100  Sum_probs=97.6

Q ss_pred             CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCc-ccH
Q 048556          275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFT-SSI  353 (478)
Q Consensus       275 ~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti  353 (478)
                      +.++|+|+||++++|+++||+||||||||||+++|+|++    |.+.++          ..++.++|++|++ ++. -|.
T Consensus        11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~-~~~~l~~   75 (245)
T 2jeo_A           11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDR-FYKVLTA   75 (245)
T ss_dssp             ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGG-GBCCCCH
T ss_pred             CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCc-CccccCH
Confidence            357999999999999999999999999999999999976    555443          3578899999996 444 489


Q ss_pred             HHHHhcCCCCC--C-HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Q 048556          354 KDNINYGKDGA--S-IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL  430 (478)
Q Consensus       354 ~eNl~~~~~~~--~-~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~L  430 (478)
                      .+|+.+.....  + ++.. .   ...+.+.++.+.++.+..    ...||+||+||+++ ++++.+|+++|+|||....
T Consensus        76 ~~~~~~~~~~~~~~~~~~~-~---~~~~~~~L~~l~~~~~~~----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~  146 (245)
T 2jeo_A           76 EQKAKALKGQYNFDHPDAF-D---NDLMHRTLKNIVEGKTVE----VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY  146 (245)
T ss_dssp             HHHHHHHTTCCCTTSGGGB-C---HHHHHHHHHHHHTTCCEE----ECCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred             hHhhhhhccCCCCCCcccc-c---HHHHHHHHHHHHCCCCee----cccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence            99986532111  1 1110 0   001122222222233333    35799999999988 6889999999999998888


Q ss_pred             CHHHHHHHHHHHHHhcCCCeEEEEecCch
Q 048556          431 DAESERVVQEALDKIMINRTTVIVAHRLS  459 (478)
Q Consensus       431 D~~~~~~i~~~l~~~~~~~t~i~itH~~~  459 (478)
                      |..        +.+. .+.|++++||...
T Consensus       147 ~~~--------l~~~-~~~~i~v~th~~~  166 (245)
T 2jeo_A          147 SQE--------IRDM-FHLRLFVDTDSDV  166 (245)
T ss_dssp             SHH--------HHTT-CSEEEEEECCHHH
T ss_pred             cHH--------HHHh-cCeEEEEECCHHH
Confidence            764        2222 3789999999743

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.80  E-value=2.8e-20  Score=207.69  Aligned_cols=156  Identities=28%  Similarity=0.419  Sum_probs=112.1

Q ss_pred             HHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCC-CHHHHHHHHHHhcHHHHHHh
Q 048556          306 ISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGA-SIAEIMAAAELANAAKFIDS  384 (478)
Q Consensus       306 ~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~-~~~~~~~a~~~~~~~~~i~~  384 (478)
                      .....+.+.|+.|+|+++|+++.++....+.+.++++.+            +.+...+. ...++.+..+  ...+++..
T Consensus       385 ~~C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~------------~~l~~~~~~~~~~~~~~~~--~~~~~L~~  450 (916)
T 3pih_A          385 SVCGGRRLNREALSVKINGLNIHEFTELSISEELEFLKN------------LNLTEREREIVGELLKEIE--KRLEFLVD  450 (916)
T ss_dssp             TTTCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHS------------CCCCTTTTTTHHHHHHHHH--HHHHHHHT
T ss_pred             hhcccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHh------------ccCcHHHHHHHHhhHHHHH--HHHHHHHH
Confidence            344556789999999999999865433222222332211            11111110 1112222111  12345555


Q ss_pred             CCCCcccc-ccCCCCCCChHHHHHHHHHHHHcCCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchh
Q 048556          385 LPQGLDTM-VGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLST  460 (478)
Q Consensus       385 lp~g~~t~-~~~~g~~LSgGq~Qrl~lARall~~~~--ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~  460 (478)
                      +  |++.. .+....+|||||+||++|||||..+|+  +|||||||++||+...+.+++.|+++. .++|+|+|||+++.
T Consensus       451 v--gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~  528 (916)
T 3pih_A          451 V--GLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEV  528 (916)
T ss_dssp             T--TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHH
T ss_pred             c--CCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            5  67643 567788999999999999999999887  999999999999999999999999886 47899999999999


Q ss_pred             hhhcCEEEEE------eCCEEee
Q 048556          461 VRNADLIAVI------HQGKLVE  477 (478)
Q Consensus       461 ~~~~d~i~vl------~~G~i~~  477 (478)
                      +..||+|++|      ++|+++.
T Consensus       529 ~~~aD~ii~lgpgag~~~G~iv~  551 (916)
T 3pih_A          529 IRNADHIIDIGPGGGTNGGRVVF  551 (916)
T ss_dssp             HHTCSEEEEEESSSGGGCSEEEE
T ss_pred             HHhCCEEEEEcCCcccCCCEEEE
Confidence            9999999999      8899874

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.80  E-value=1.1e-23  Score=214.47  Aligned_cols=224  Identities=11%  Similarity=0.006  Sum_probs=146.5

Q ss_pred             HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccCCCCCCc-cCCCCc
Q 048556          182 AIWFGGKMILE-KGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPLIDAYDSNGVK-LDDIRG  259 (478)
Q Consensus       182 ~l~~g~~lv~~-g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~-~~~~~~  259 (478)
                      +.+.|++.+.. +.+|.|.+.+++.+......+  .+....+.+..+..+..|+.+++  +|...... .... .....+
T Consensus        51 v~~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~-~~~~ir~~~~~  125 (361)
T 2gza_A           51 CERASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGT-ISVTIRKPSFT  125 (361)
T ss_dssp             EEETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTC-CEEEEECCCCC
T ss_pred             EEECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCC-eEEEEEecCCC
Confidence            34456666665 789999988877665544333  11111112222333455666655  22211100 0000 000112


Q ss_pred             cE---------EEEeEEEE---CCCCCCCccc---------ccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCcc
Q 048556          260 DI---------ELKDIYFS---YPSRPGEQIF---------NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG  318 (478)
Q Consensus       260 ~i---------~~~~v~~~---y~~~~~~~~l---------~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G  318 (478)
                      .+         +|+||+|+   |++. +.++|         +++||++++|+.++|+||||||||||+++|+|+++|++|
T Consensus       126 ~itl~~l~~~g~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g  204 (361)
T 2gza_A          126 RRTLEDYAQQGFFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQR  204 (361)
T ss_dssp             CCCHHHHHHTTTTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSC
T ss_pred             CCCHHHHHhcCCcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCce
Confidence            35         88999999   8531 23455         999999999999999999999999999999999999999


Q ss_pred             EEEECCeecCCCCHHHhhcceEEEe-cCCCC---CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcccccc
Q 048556          319 EVLIDGVNLKEFQLKWIRGKIGLVS-QEPVL---FTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVG  394 (478)
Q Consensus       319 ~i~~~g~~~~~~~~~~~r~~i~~v~-Q~~~l---f~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~  394 (478)
                      .|+++|.  .++.....++.+++++ |++.+   +..|+++|+..+.....+..+..+++.+.+.++++.+|.|+++.++
T Consensus       205 ~I~ie~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~  282 (361)
T 2gza_A          205 LITIEDV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSIT  282 (361)
T ss_dssp             EEEEESS--SCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEE
T ss_pred             EEEECCc--cccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEE
Confidence            9999985  3444445678899999 88876   6779999999875433333222233334566788899999999898


Q ss_pred             CCCCCCChHHHHHHHHHHH
Q 048556          395 EHGTQLSGGQKQRIAIARA  413 (478)
Q Consensus       395 ~~g~~LSgGq~Qrl~lARa  413 (478)
                      +-..+-..+..+|+.....
T Consensus       283 t~H~~~~~~~~~Rl~~l~~  301 (361)
T 2gza_A          283 SCHAGSCELTFERLALMVL  301 (361)
T ss_dssp             EEECSSHHHHHHHHHHHHT
T ss_pred             EECCCCHHHHHHHHHHHHh
Confidence            8777778899999987764

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.79  E-value=1.5e-20  Score=177.98  Aligned_cols=153  Identities=19%  Similarity=0.265  Sum_probs=104.3

Q ss_pred             eecCCCEEEEEcCCCCChHHHHHHHhccCCC-------CccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHH
Q 048556          285 SIPSGTTAALVGQSGSGKSTVISLIERFYDP-------QAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNI  357 (478)
Q Consensus       285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-------~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl  357 (478)
                      -+++|++++|+||||||||||++.|+|.+.|       ..|.+++++.+.  .+    ++++++++|+..++..|+.||+
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~   94 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI   94 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence            6999999999999999999999999997655       445788877652  11    2357778888888888999999


Q ss_pred             hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH--cCCCCEEEEeCCCCCCCHH--
Q 048556          358 NYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI--LKDPRILLLDEATSALDAE--  433 (478)
Q Consensus       358 ~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal--l~~~~ililDEpts~LD~~--  433 (478)
                      .+..+....++ ....+  .+.+.+.                            +++  ..+|+++++||||+.+|+.  
T Consensus        95 ~~~~~~~~~~~-~~~~~--~~~~~~~----------------------------~~~~~~~~~~llilDe~~~~l~~~~~  143 (231)
T 4a74_A           95 YVARAFNSNHQ-MLLVQ--QAEDKIK----------------------------ELLNTDRPVKLLIVDSLTSHFRSEYI  143 (231)
T ss_dssp             EEEECCSHHHH-HHHHH--HHHHHHH----------------------------HHTTSSSCEEEEEEETSSHHHHHHSC
T ss_pred             EEEecCChHHH-HHHHH--HHHHHHH----------------------------HhcccCCceeEEEECChHHHhccccC
Confidence            87654322211 11111  1111111                            111  3589999999999999984  


Q ss_pred             -----HH-----HHHHHHHHHhc--CCCeEEEEecCch----hhhh-cCEEEEEeCCE
Q 048556          434 -----SE-----RVVQEALDKIM--INRTTVIVAHRLS----TVRN-ADLIAVIHQGK  474 (478)
Q Consensus       434 -----~~-----~~i~~~l~~~~--~~~t~i~itH~~~----~~~~-~d~i~vl~~G~  474 (478)
                           .+     ..+++.|.++.  .++|+|++||...    .+.+ ||++++|++|+
T Consensus       144 ~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~  201 (231)
T 4a74_A          144 GRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK  201 (231)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence                 22     25667776653  3789999999544    4666 89999998763

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.79  E-value=4e-22  Score=203.32  Aligned_cols=148  Identities=17%  Similarity=0.269  Sum_probs=100.5

Q ss_pred             ccccceeeecC--CCEEEEEcCCCCChHHHHHHHhccCCCCc----cEEEE----CCeecCCCCHHHhhcceEEEecCCC
Q 048556          278 IFNGFSLSIPS--GTTAALVGQSGSGKSTVISLIERFYDPQA----GEVLI----DGVNLKEFQLKWIRGKIGLVSQEPV  347 (478)
Q Consensus       278 ~l~~is~~i~~--G~~~~ivG~sGsGKSTL~~ll~g~~~~~~----G~i~~----~g~~~~~~~~~~~r~~i~~v~Q~~~  347 (478)
                      ..+.+++++++  |++++|+||||||||||+++|+|+++|++    |+|.+    +|.++ .++..++ ++|++++|++.
T Consensus       157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~  234 (365)
T 1lw7_A          157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI  234 (365)
T ss_dssp             GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred             ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence            35679999999  99999999999999999999999999999    99887    35555 4555555 55999999999


Q ss_pred             CCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCC--ccccc-c-------CCCCCCChHHHHHHHHHHHH---
Q 048556          348 LFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQG--LDTMV-G-------EHGTQLSGGQKQRIAIARAI---  414 (478)
Q Consensus       348 lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g--~~t~~-~-------~~g~~LSgGq~Qrl~lARal---  414 (478)
                      +|.+|++||+.++..+..+...............+..++.+  ++..+ +       ++|.++|+||+||++++|+|   
T Consensus       235 ~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l  314 (365)
T 1lw7_A          235 DYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKL  314 (365)
T ss_dssp             HHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHH
T ss_pred             HHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHH
Confidence            99999999999876544344443333322323333333322  22211 2       45566777777777777777   


Q ss_pred             cC--CCCEEEEeCCC
Q 048556          415 LK--DPRILLLDEAT  427 (478)
Q Consensus       415 l~--~~~ililDEpt  427 (478)
                      ++  +++++++||||
T Consensus       315 ~~~~~~~ililde~~  329 (365)
T 1lw7_A          315 LDKYKVPYIEIESPS  329 (365)
T ss_dssp             HHGGGCCCEEEECSS
T ss_pred             HHHcCCCEEEeCCCC
Confidence            65  67777777775

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.79  E-value=2.9e-19  Score=158.64  Aligned_cols=87  Identities=25%  Similarity=0.358  Sum_probs=75.4

Q ss_pred             Cccccc-----cCCCCCCChHHHHHHHHH------HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEe
Q 048556          388 GLDTMV-----GEHGTQLSGGQKQRIAIA------RAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVA  455 (478)
Q Consensus       388 g~~t~~-----~~~g~~LSgGq~Qrl~lA------Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~it  455 (478)
                      +++..+     .....+||||||||++||      ||++.+|++++|||||++||+.+.+.+.+.++++. +++|+|++|
T Consensus        41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs  120 (148)
T 1f2t_B           41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS  120 (148)
T ss_dssp             SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred             ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEE
Confidence            555554     345689999999999876      99999999999999999999999999999999875 468999999


Q ss_pred             cCchhhhhcCEEEEE--eCCE
Q 048556          456 HRLSTVRNADLIAVI--HQGK  474 (478)
Q Consensus       456 H~~~~~~~~d~i~vl--~~G~  474 (478)
                      |++.....||++++|  ++|.
T Consensus       121 H~~~~~~~~d~ii~l~~~~g~  141 (148)
T 1f2t_B          121 HDEELKDAADHVIRISLENGS  141 (148)
T ss_dssp             SCGGGGGGCSEEEEEEEETTE
T ss_pred             ChHHHHHhCCEEEEEEcCCCe
Confidence            999766679999999  5674

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.79  E-value=1e-19  Score=200.59  Aligned_cols=147  Identities=20%  Similarity=0.227  Sum_probs=113.4

Q ss_pred             CccEEEEeEEEECCCC--CCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC-CCccEEEECCeecCCCCHHH
Q 048556          258 RGDIELKDIYFSYPSR--PGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-PQAGEVLIDGVNLKEFQLKW  334 (478)
Q Consensus       258 ~~~i~~~~v~~~y~~~--~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-~~~G~i~~~g~~~~~~~~~~  334 (478)
                      .+.+++++.  ++|--  .+.++++|+||+   |++++|+||||||||||+|+++|+.. ++.|.+.    +  .     
T Consensus       548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p--a-----  611 (765)
T 1ewq_A          548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P--A-----  611 (765)
T ss_dssp             SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S--S-----
T ss_pred             CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e--h-----
Confidence            346888887  44420  135789999999   99999999999999999999999974 6778652    1  1     


Q ss_pred             hhcceEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556          335 IRGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA  413 (478)
Q Consensus       335 ~r~~i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa  413 (478)
                      .+..+++++|   +|.. ++.||+..                                       .+|+|++|++.+|++
T Consensus       612 ~~~~i~~v~~---i~~~~~~~d~l~~---------------------------------------g~S~~~~e~~~la~i  649 (765)
T 1ewq_A          612 EEAHLPLFDG---IYTRIGASDDLAG---------------------------------------GKSTFMVEMEEVALI  649 (765)
T ss_dssp             SEEEECCCSE---EEEECCC---------------------------------------------CCSHHHHHHHHHHHH
T ss_pred             hccceeeHHH---hhccCCHHHHHHh---------------------------------------cccHHHHHHHHHHHH
Confidence            1456888887   5654 66766533                                       258899999999999


Q ss_pred             H--cCCCCEEEEeCC---CCCCCHHHH-HHHHHHHHHhcCCCeEEEEecCchhhhhc
Q 048556          414 I--LKDPRILLLDEA---TSALDAESE-RVVQEALDKIMINRTTVIVAHRLSTVRNA  464 (478)
Q Consensus       414 l--l~~~~ililDEp---ts~LD~~~~-~~i~~~l~~~~~~~t~i~itH~~~~~~~~  464 (478)
                      +  +.+|+++|||||   |+++|..+. ..+.+.+.+  .++|+|++||+.+....+
T Consensus       650 l~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~  704 (765)
T 1ewq_A          650 LKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG  704 (765)
T ss_dssp             HHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred             HHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence            9  999999999999   999999875 578888876  578999999998876544

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.79  E-value=1.1e-18  Score=195.52  Aligned_cols=159  Identities=15%  Similarity=0.109  Sum_probs=112.9

Q ss_pred             ccEEEEeEEEECCCC--CCCcccccceeeecCCCEEEEEcCCCCChHHHHHHH--------hccCCCCccEEEECCeecC
Q 048556          259 GDIELKDIYFSYPSR--PGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLI--------ERFYDPQAGEVLIDGVNLK  328 (478)
Q Consensus       259 ~~i~~~~v~~~y~~~--~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll--------~g~~~~~~G~i~~~g~~~~  328 (478)
                      ..+++++...-+-..  .+..+++|++|++++|++++|+|||||||||++|++        .|.+-|.++..        
T Consensus       630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~--------  701 (934)
T 3thx_A          630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE--------  701 (934)
T ss_dssp             CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred             cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence            357887764433211  124789999999999999999999999999999999        66655544321        


Q ss_pred             CCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 048556          329 EFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRI  408 (478)
Q Consensus       329 ~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl  408 (478)
                                ++.+   ..+|.       .++.                 .+.+              ...+|+|++++.
T Consensus       702 ----------~~~~---d~i~~-------~ig~-----------------~d~l--------------~~~lStf~~e~~  730 (934)
T 3thx_A          702 ----------VSIV---DCILA-------RVGA-----------------GDSQ--------------LKGVSTFMAEML  730 (934)
T ss_dssp             ----------EECC---SEEEE-------ECC----------------------------------------CHHHHHHH
T ss_pred             ----------chHH---HHHHH-------hcCc-----------------hhhH--------------HHhHhhhHHHHH
Confidence                      0100   01111       0110                 0100              134788888888


Q ss_pred             HHHHHH--cCCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhc--CCCeEEEEecCchhhhhcCEEEEEeCCEEe
Q 048556          409 AIARAI--LKDPRILLLDEATSALDAESERVV-QEALDKIM--INRTTVIVAHRLSTVRNADLIAVIHQGKLV  476 (478)
Q Consensus       409 ~lARal--l~~~~ililDEpts~LD~~~~~~i-~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~vl~~G~i~  476 (478)
                      .+|+++  +.+|+++||||||+|+|+.....+ +..++.+.  .++|+|++||+.+....||++..+++|++.
T Consensus       731 ~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~  803 (934)
T 3thx_A          731 ETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVT  803 (934)
T ss_dssp             HHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEE
T ss_pred             HHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEE
Confidence            888888  999999999999999999988777 45555554  378999999999888889999999999885

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.78  E-value=5.2e-20  Score=203.91  Aligned_cols=170  Identities=19%  Similarity=0.282  Sum_probs=124.9

Q ss_pred             CCCCChHHHHHHHhcc---------CCCCccEEEECCeecCC---CCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCC
Q 048556          297 QSGSGKSTVISLIERF---------YDPQAGEVLIDGVNLKE---FQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGA  364 (478)
Q Consensus       297 ~sGsGKSTL~~ll~g~---------~~~~~G~i~~~g~~~~~---~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~  364 (478)
                      .|..||+++.+.+...         +.|..|+|.++|+++.+   ++..++...+.-+||++..+. |  +...+..   
T Consensus       270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~-~--~~~~~~~---  343 (842)
T 2vf7_A          270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGH-A--ERVKNRP---  343 (842)
T ss_dssp             CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCS-T--TSSSSCS---
T ss_pred             cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcc-c--chhhcch---
Confidence            3556899999988774         45678999999999887   555555555555555544221 1  1111111   


Q ss_pred             CHHHHH-----HHHHHhcHHHHHHhCCCCcccc-ccCCCCCCChHHHHHHHHHHHHcCCC--CEEEEeCCCCCCCHHHHH
Q 048556          365 SIAEIM-----AAAELANAAKFIDSLPQGLDTM-VGEHGTQLSGGQKQRIAIARAILKDP--RILLLDEATSALDAESER  436 (478)
Q Consensus       365 ~~~~~~-----~a~~~~~~~~~i~~lp~g~~t~-~~~~g~~LSgGq~Qrl~lARall~~~--~ililDEpts~LD~~~~~  436 (478)
                      ...++.     +..+.  + +.+..+  |++.. ++....+|||||+||++||+||..+|  .+|||||||++||+...+
T Consensus       344 ~~~~i~~~i~~ei~~r--l-~~L~~v--GL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~  418 (842)
T 2vf7_A          344 EQAIALQRMAADLVKR--L-DVLLHL--GLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTE  418 (842)
T ss_dssp             SHHHHHHHHHHHHHHH--H-HHHHHT--TCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHH
T ss_pred             hhHHHHHHHHHHHHHH--H-HHHHhC--CCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHH
Confidence            111111     11111  1 244555  77654 67888999999999999999999999  599999999999999999


Q ss_pred             HHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEE------eCCEEee
Q 048556          437 VVQEALDKIM-INRTTVIVAHRLSTVRNADLIAVI------HQGKLVE  477 (478)
Q Consensus       437 ~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl------~~G~i~~  477 (478)
                      .+++.|+++. .+.|+|+|+||++.++.||+|++|      ++|+++.
T Consensus       419 ~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~  466 (842)
T 2vf7_A          419 ALLSALENLKRGGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILY  466 (842)
T ss_dssp             HHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEE
T ss_pred             HHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEeCCCcccCCCEEEE
Confidence            9999998886 478999999999999889999999      6888764

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.78  E-value=2.9e-22  Score=187.94  Aligned_cols=141  Identities=13%  Similarity=0.170  Sum_probs=106.4

Q ss_pred             eecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc---cHHHHHhcCC
Q 048556          285 SIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS---SIKDNINYGK  361 (478)
Q Consensus       285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~---ti~eNl~~~~  361 (478)
                      ..++|+++||+||||||||||+++|+|++.|                      .++|++|++.+++.   |+++|..+..
T Consensus         2 ~~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~   59 (211)
T 3asz_A            2 SAPKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNY   59 (211)
T ss_dssp             ---CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT
T ss_pred             CCCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCC
Confidence            3578999999999999999999999999875                      58999999988743   6777766532


Q ss_pred             --CC-CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHH----HHHHHHHHHHcCCCCEEEEeCCCCC-----
Q 048556          362 --DG-ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQ----KQRIAIARAILKDPRILLLDEATSA-----  429 (478)
Q Consensus       362 --~~-~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq----~Qrl~lARall~~~~ililDEpts~-----  429 (478)
                        +. ...+++.++++..++.           ..+...+..+|+||    +||+++||+++.+|+++++||||++     
T Consensus        60 ~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~  128 (211)
T 3asz_A           60 DHPDAFDLALYLEHAQALLRG-----------LPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLK  128 (211)
T ss_dssp             TSGGGBCHHHHHHHHHHHHTT-----------CCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEE
T ss_pred             CChhhhhHHHHHHHHHHHHcC-----------CCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEE
Confidence              22 1234455444333221           12222356678885    5789999999999999999999999     


Q ss_pred             --CCHHHHHHHHHHHHHhc--CCCeEEEEecCc
Q 048556          430 --LDAESERVVQEALDKIM--INRTTVIVAHRL  458 (478)
Q Consensus       430 --LD~~~~~~i~~~l~~~~--~~~t~i~itH~~  458 (478)
                        ||+.++..+.+.+++..  .++|++.++|+.
T Consensus       129 i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~  161 (211)
T 3asz_A          129 VFVDADADERFIRRLKRDVLERGRSLEGVVAQY  161 (211)
T ss_dssp             EEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             EEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence              99999999999987752  478999999984

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.77  E-value=4.3e-20  Score=186.98  Aligned_cols=158  Identities=16%  Similarity=0.184  Sum_probs=111.5

Q ss_pred             cccccc-eeeecCCCEEEEEcCCCCChHHHHHHHhccC--CCCc----cE-EEECCeecCCCCHHHhhcceEEEecCCCC
Q 048556          277 QIFNGF-SLSIPSGTTAALVGQSGSGKSTVISLIERFY--DPQA----GE-VLIDGVNLKEFQLKWIRGKIGLVSQEPVL  348 (478)
Q Consensus       277 ~~l~~i-s~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~--~~~~----G~-i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l  348 (478)
                      +.|+++ ++.+++|++++|+||||||||||++.+++.+  +|++    |+ |++++.+..      .++++++++|+..+
T Consensus       118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~  191 (349)
T 1pzn_A          118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGL  191 (349)
T ss_dssp             HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTC
T ss_pred             HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCC
Confidence            456665 6899999999999999999999999999998  6666    67 899987641      24568889999998


Q ss_pred             CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc-------CCCCEE
Q 048556          349 FTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL-------KDPRIL  421 (478)
Q Consensus       349 f~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall-------~~~~il  421 (478)
                      +..++.+|+.+.... +                                   |++|+|++.++++++       .+|+++
T Consensus       192 ~~~~v~~ni~~~~~~-~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~ll  235 (349)
T 1pzn_A          192 DPDEVLKHIYVARAF-N-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLL  235 (349)
T ss_dssp             CHHHHGGGEEEEECC-S-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred             CHHHHhhCEEEEecC-C-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence            888999999876432 1                                   234556666666665       789999


Q ss_pred             EEeCCCCCCCHHH------------HHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEe
Q 048556          422 LLDEATSALDAES------------ERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLV  476 (478)
Q Consensus       422 ilDEpts~LD~~~------------~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~  476 (478)
                      |+||||+.+|+..            ...+++.|+++.  .++|+|+++|....... ++.+.+...|+++
T Consensus       236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l  305 (349)
T 1pzn_A          236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHIL  305 (349)
T ss_dssp             EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCC
T ss_pred             EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceE
Confidence            9999999999863            245555665553  37899999998764432 2234445555543

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.76  E-value=1.7e-19  Score=182.74  Aligned_cols=147  Identities=22%  Similarity=0.250  Sum_probs=107.6

Q ss_pred             EeEEEECCCCCCCccccccee-------eecCCCEEEEEcCCCCChHHHHHHHhccCCCC-ccEEEECCeecCCCCHHHh
Q 048556          264 KDIYFSYPSRPGEQIFNGFSL-------SIPSGTTAALVGQSGSGKSTVISLIERFYDPQ-AGEVLIDGVNLKEFQLKWI  335 (478)
Q Consensus       264 ~~v~~~y~~~~~~~~l~~is~-------~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~-~G~i~~~g~~~~~~~~~~~  335 (478)
                      .+++++|... ..+.|+++.+       ..++|+.++|+||||||||||+++|+|+++|+ +|.|...+.++ ++.   .
T Consensus        92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~  166 (356)
T 3jvv_A           92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---H  166 (356)
T ss_dssp             EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---C
T ss_pred             cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---h
Confidence            5677777543 3567888887       78899999999999999999999999999987 56665443333 222   2


Q ss_pred             hcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556          336 RGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL  415 (478)
Q Consensus       336 r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall  415 (478)
                      +...++++|...-..            ..+..+                                        +|||||.
T Consensus       167 ~~~~~~v~q~~~~~~------------~~~~~~----------------------------------------~La~aL~  194 (356)
T 3jvv_A          167 ESKKCLVNQREVHRD------------TLGFSE----------------------------------------ALRSALR  194 (356)
T ss_dssp             CCSSSEEEEEEBTTT------------BSCHHH----------------------------------------HHHHHTT
T ss_pred             hccccceeeeeeccc------------cCCHHH----------------------------------------HHHHHhh
Confidence            334566666542111            011111                                        9999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCC
Q 048556          416 KDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQG  473 (478)
Q Consensus       416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G  473 (478)
                      .+|+++++||||   |.++.+.+.+.   ...++|+++++|+.+.+..+||+++|..|
T Consensus       195 ~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~~  246 (356)
T 3jvv_A          195 EDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFPA  246 (356)
T ss_dssp             SCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred             hCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence            999999999999   77775555544   23578999999999999889999887543

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.76  E-value=2.2e-20  Score=174.26  Aligned_cols=169  Identities=14%  Similarity=0.191  Sum_probs=102.2

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccC-----CCCccEEEE-------CCeecC
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFY-----DPQAGEVLI-------DGVNLK  328 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-----~~~~G~i~~-------~g~~~~  328 (478)
                      ++++|++|.|+    .+++++  |++++|++++|+|+||||||||++.|+|..     .|+.|.+.+       ++..+.
T Consensus         4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~   77 (210)
T 1pui_A            4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV   77 (210)
T ss_dssp             -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred             hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence            78999999995    257888  899999999999999999999999999998     888887754       222221


Q ss_pred             CCC-----------HHHhhcceEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-cccC
Q 048556          329 EFQ-----------LKWIRGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDT-MVGE  395 (478)
Q Consensus       329 ~~~-----------~~~~r~~i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t-~~~~  395 (478)
                      +.+           .+.+++.++++.|+...+++ ++..++..+   .+..+ .+      +.+++...  +... .++.
T Consensus        78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~---~~~~~-~~------~~~~~~~~--~~~~~~v~n  145 (210)
T 1pui_A           78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHP---LKDLD-QQ------MIEWAVDS--NIAVLVLLT  145 (210)
T ss_dssp             ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSC---CCHHH-HH------HHHHHHHT--TCCEEEEEE
T ss_pred             ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCC---CchhH-HH------HHHHHHHc--CCCeEEEEe
Confidence            111           12233344444443322222 222222221   12211 01      12223221  3332 2466


Q ss_pred             CCCCCChHHHHH-HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC
Q 048556          396 HGTQLSGGQKQR-IAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI  447 (478)
Q Consensus       396 ~g~~LSgGq~Qr-l~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~  447 (478)
                      ....+|+||+|| +..+|+++.+|+.+++|||||++|..+...+++.|.+..+
T Consensus       146 K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~  198 (210)
T 1pui_A          146 KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS  198 (210)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred             cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence            667899999999 8999999999999999999999999999999999987643

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.75  E-value=1.1e-20  Score=204.74  Aligned_cols=181  Identities=19%  Similarity=0.277  Sum_probs=112.9

Q ss_pred             cEEEEeEEEECCCCCCCcccccc----------eeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-CccEEEECCeecC
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGF----------SLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVLIDGVNLK  328 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~i----------s~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-~~G~i~~~g~~~~  328 (478)
                      .++++|+++.|++. .+++|+.+          +++++.   +||+||||||||||+++|+|++.| ++|.|+++|.++.
T Consensus        10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~   85 (608)
T 3szr_A           10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK   85 (608)
T ss_dssp             ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred             hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence            47899999999632 13455444          366664   999999999999999999999988 7999999999863


Q ss_pred             CC---CHHHhhcceEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHH
Q 048556          329 EF---QLKWIRGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQ  404 (478)
Q Consensus       329 ~~---~~~~~r~~i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq  404 (478)
                      ..   ....+++.++|++|++.+++. |+++|+.++.                  +.+...           +..+|   
T Consensus        86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~------------------~~~~~~-----------~~~~s---  133 (608)
T 3szr_A           86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ------------------NAIAGE-----------GMGIS---  133 (608)
T ss_dssp             EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH------------------HHHHCS-----------SSCCC---
T ss_pred             EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH------------------HHhcCC-----------ccccc---
Confidence            21   134578899999999998875 9999986421                  011111           11111   


Q ss_pred             HHHHHHHHHHcCCCCEEEEeCC------CCCCCHHHHHHHHHHHHHhc-C--CCeEEEEecCchhh--------hh----
Q 048556          405 KQRIAIARAILKDPRILLLDEA------TSALDAESERVVQEALDKIM-I--NRTTVIVAHRLSTV--------RN----  463 (478)
Q Consensus       405 ~Qrl~lARall~~~~ililDEp------ts~LD~~~~~~i~~~l~~~~-~--~~t~i~itH~~~~~--------~~----  463 (478)
                      ++++.++.+....|+++++|||      |++||+..++.+.+.++++. +  ..++++++|+++..        +.    
T Consensus       134 ~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~  213 (608)
T 3szr_A          134 HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPE  213 (608)
T ss_dssp             SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSS
T ss_pred             hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhc
Confidence            2334445555668999999999      99999999999999998853 2  35677899997632        22    


Q ss_pred             -cCEEEEEeCCEEe
Q 048556          464 -ADLIAVIHQGKLV  476 (478)
Q Consensus       464 -~d~i~vl~~G~i~  476 (478)
                       ...|.|+.++.++
T Consensus       214 g~rtI~VlTK~Dlv  227 (608)
T 3szr_A          214 GDRTIGILTKPDLV  227 (608)
T ss_dssp             CCSEEEEEECGGGS
T ss_pred             CCceEEEecchhhc
Confidence             3567888776543

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.75  E-value=1.3e-18  Score=193.28  Aligned_cols=142  Identities=24%  Similarity=0.376  Sum_probs=106.1

Q ss_pred             CCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCC-CCHHH-------HHHHHHHhcHHHHHHh
Q 048556          313 YDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDG-ASIAE-------IMAAAELANAAKFIDS  384 (478)
Q Consensus       313 ~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~-~~~~~-------~~~a~~~~~~~~~i~~  384 (478)
                      +.|....+.++|+++.++                  ...||.|++.|.... .+.++       +.+..+.  + +++..
T Consensus       432 l~~~~l~v~~~g~~i~q~------------------~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~R--l-~~L~~  490 (972)
T 2r6f_A          432 LKKESLAVLVGGKHIGEV------------------TAMSVTEALAFFDGLELTEKEAQIARLILREIRDR--L-GFLQN  490 (972)
T ss_dssp             BCTTTTTEESSSCBHHHH------------------HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHH--H-HHHHH
T ss_pred             cCHHHheeEECCCcHHHH------------------hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--H-HHhhh
Confidence            456667777777765432                  344777777764311 12211       1111112  1 23444


Q ss_pred             CCCCcccc-ccCCCCCCChHHHHHHHHHHHHcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchh
Q 048556          385 LPQGLDTM-VGEHGTQLSGGQKQRIAIARAILKDP--RILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLST  460 (478)
Q Consensus       385 lp~g~~t~-~~~~g~~LSgGq~Qrl~lARall~~~--~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~  460 (478)
                      +  |++.. ++....+|||||+||++||++|..+|  ++|||||||++||+...+.+++.|+++. .+.|||+|+||+++
T Consensus       491 v--GL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~  568 (972)
T 2r6f_A          491 V--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDT  568 (972)
T ss_dssp             H--TCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHH
T ss_pred             C--CCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence            4  77653 67778899999999999999999985  9999999999999999999999999886 47899999999999


Q ss_pred             hhhcCEEEEE------eCCEEee
Q 048556          461 VRNADLIAVI------HQGKLVE  477 (478)
Q Consensus       461 ~~~~d~i~vl------~~G~i~~  477 (478)
                      ++.||+|++|      ++|+++.
T Consensus       569 i~~ADrIi~LgpgaG~~gG~iv~  591 (972)
T 2r6f_A          569 MLAADYLIDIGPGAGIHGGEVVA  591 (972)
T ss_dssp             HHSCSEEEEECSSSGGGCCSEEE
T ss_pred             HHhCCEEEEeCCCccCCCCEEEE
Confidence            9999999999      6888874

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.74  E-value=5.9e-19  Score=175.11  Aligned_cols=151  Identities=23%  Similarity=0.210  Sum_probs=103.9

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH----HHh--hcceEEEecCCCCCcc-cHHHHHhc
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL----KWI--RGKIGLVSQEPVLFTS-SIKDNINY  359 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~----~~~--r~~i~~v~Q~~~lf~~-ti~eNl~~  359 (478)
                      ++|++++|+||||||||||++.|+|+++|++|+|.++|.|+.....    ..+  |..++|++|++.+++. |+++|+.+
T Consensus       100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~  179 (304)
T 1rj9_A          100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA  179 (304)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence            3699999999999999999999999999999999999999866431    222  4579999999988875 88999864


Q ss_pred             CCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCC--EEEEeCCCCCCCHHHHHH
Q 048556          360 GKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSALDAESERV  437 (478)
Q Consensus       360 ~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~--ililDEpts~LD~~~~~~  437 (478)
                      +.             ..+.+..+-..+ |..   ......++..++||.+||||+..+|+  ++.|| |+++      +.
T Consensus       180 ~~-------------~~~~d~~llDt~-G~~---~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~------~~  235 (304)
T 1rj9_A          180 MK-------------ARGYDLLFVDTA-GRL---HTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTG------QN  235 (304)
T ss_dssp             HH-------------HHTCSEEEECCC-CCC---TTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBC------TH
T ss_pred             HH-------------hCCCCEEEecCC-CCC---CchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHH------HH
Confidence            31             000000000011 110   01112346677999999999999999  44455 4444      34


Q ss_pred             HHHHHHHhc--CCCeEEEEecCchhh
Q 048556          438 VQEALDKIM--INRTTVIVAHRLSTV  461 (478)
Q Consensus       438 i~~~l~~~~--~~~t~i~itH~~~~~  461 (478)
                      +.+.++++.  .+.|+|++||.....
T Consensus       236 ~~~~~~~~~~~~~~t~iivTh~d~~a  261 (304)
T 1rj9_A          236 GLEQAKKFHEAVGLTGVIVTKLDGTA  261 (304)
T ss_dssp             HHHHHHHHHHHHCCSEEEEECTTSSC
T ss_pred             HHHHHHHHHHHcCCcEEEEECCcccc
Confidence            444444432  268999999986543

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.74  E-value=5.3e-20  Score=182.68  Aligned_cols=162  Identities=17%  Similarity=0.141  Sum_probs=80.5

Q ss_pred             EeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhcc-CCCCccEEEECCeecCCCCHHHhhcceEEE
Q 048556          264 KDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERF-YDPQAGEVLIDGVNLKEFQLKWIRGKIGLV  342 (478)
Q Consensus       264 ~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~-~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v  342 (478)
                      +|+++.|.+   +.++++++|+|      +|+||||+|||||++.|.|. ..|++| +.++|.++.. . .. ++.++++
T Consensus         2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t-~~-~~~~~~~   68 (301)
T 2qnr_A            2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-T-VQ-IEASTVE   68 (301)
T ss_dssp             -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred             CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-c-ce-EeeEEEE
Confidence            478888953   47999999998      99999999999999999998 888999 8888887643 1 11 3568999


Q ss_pred             ecCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEE
Q 048556          343 SQEPVLFT-SSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRIL  421 (478)
Q Consensus       343 ~Q~~~lf~-~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~il  421 (478)
                      +|++..+. -|+.|+..++......++...      +.+++...   .+    ....++|||||||+++|||++    ++
T Consensus        69 ~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~------l~~~l~~~---~~----~~~~~~sgg~rqrv~~ara~~----ll  131 (301)
T 2qnr_A           69 IEERGVKLRLTVVDTPGYGDAINCRDCFKT------IISYIDEQ---FE----RYLHDESGLNRRHIIDNRVHC----CF  131 (301)
T ss_dssp             EC---CCEEEEEEEEC-----------CTT------HHHHHHHH---HH----HHHHHHTSSCCTTCCCCCCCE----EE
T ss_pred             ecCCCcccCcchhhhhhhhhhcCcHHHHHH------HHHHHHHH---HH----HHHHHhCHHhhhhhhhhhhhh----ee
Confidence            99877654 488888877642111011000      11111110   11    123469999999999999985    99


Q ss_pred             EEeCCCCC-CCHHHHHHHHHHHHHhcC--CCeEEEEecCch
Q 048556          422 LLDEATSA-LDAESERVVQEALDKIMI--NRTTVIVAHRLS  459 (478)
Q Consensus       422 ilDEpts~-LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~  459 (478)
                      ++||||++ ||+...    +.++++.+  +.++++.+|++.
T Consensus       132 ~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~  168 (301)
T 2qnr_A          132 YFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL  168 (301)
T ss_dssp             EEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred             eeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence            99999985 999874    34444433  467888899974

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.73  E-value=1.8e-19  Score=185.92  Aligned_cols=166  Identities=16%  Similarity=0.176  Sum_probs=100.3

Q ss_pred             ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556          259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK  338 (478)
Q Consensus       259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~  338 (478)
                      +.|.++|+++.|++   .++++|+||+|      +|+||||||||||++.|+|...|..|   .+|.++...+ ...++.
T Consensus        10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~   76 (418)
T 2qag_C           10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQ   76 (418)
T ss_dssp             -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred             CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeee
Confidence            35899999999963   47999999998      99999999999999999999886555   2333322111 112456


Q ss_pred             eEEEecCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556          339 IGLVSQEPVLFT-SSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD  417 (478)
Q Consensus       339 i~~v~Q~~~lf~-~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~  417 (478)
                      +++++|++.++. -|+.||+.++... ..++.++.     +.+++..              .++.+++||++||||++++
T Consensus        77 i~~v~q~~~~~~~Ltv~Dt~g~~~~~-~~~~~~~~-----i~~~i~~--------------~~~~~l~qr~~IaRal~~d  136 (418)
T 2qag_C           77 SKVLIKEGGVQLLLTIVDTPGFGDAV-DNSNCWQP-----VIDYIDS--------------KFEDYLNAESRVNRRQMPD  136 (418)
T ss_dssp             EECC------CEEEEEEECC------------CHH-----HHHHHHH--------------HHHHHTTTSCC-CCCCCCC
T ss_pred             EEEEEecCCcccceeeeechhhhhhc-cchhhHHH-----HHHHHHH--------------HHHHHHHHHHHHHHHhccC
Confidence            899999988874 5999999887642 22222221     1223321              2344567899999999999


Q ss_pred             CC---EEEEeCCC-CCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhh
Q 048556          418 PR---ILLLDEAT-SALDAESERVVQEALDKIMINRTTVIVAHRLSTV  461 (478)
Q Consensus       418 ~~---ililDEpt-s~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~  461 (478)
                      |+   ++++|||| .+||+... .+++   .+..+.++|+|.|+.+.+
T Consensus       137 ~~~~vlL~ldePt~~~L~~~d~-~~lk---~L~~~v~iIlVinK~Dll  180 (418)
T 2qag_C          137 NRVQCCLYFIAPSGHGLKPLDI-EFMK---RLHEKVNIIPLIAKADTL  180 (418)
T ss_dssp             C-CCEEEEECCC-CCSCCHHHH-HHHH---HHTTTSEEEEEEESTTSS
T ss_pred             CCeeEEEEEecCcccCCCHHHH-HHHH---HHhccCcEEEEEEcccCc
Confidence            99   99999999 69998874 3333   344567888888887654

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.72  E-value=2.9e-18  Score=162.06  Aligned_cols=165  Identities=15%  Similarity=0.058  Sum_probs=112.8

Q ss_pred             Cccccccee-eecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhc---ceEEEecCCCCCcc
Q 048556          276 EQIFNGFSL-SIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRG---KIGLVSQEPVLFTS  351 (478)
Q Consensus       276 ~~~l~~is~-~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~---~i~~v~Q~~~lf~~  351 (478)
                      .+.|+++.. .+++|+.++|+||||||||||++.+++...+.+|.+.+.+.+.   +.+.+++   .+++.+|+..    
T Consensus         9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~----   81 (235)
T 2w0m_A            9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYI----   81 (235)
T ss_dssp             CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGB----
T ss_pred             chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHh----
Confidence            467899988 8999999999999999999999999999888888888765443   2222222   2333333211    


Q ss_pred             cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCC--EEEEeCCCCC
Q 048556          352 SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSA  429 (478)
Q Consensus       352 ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~--ililDEpts~  429 (478)
                        .+++..... ...              ...  +    ..+   ....|.+|.++...+.+...+|+  ++++||||+.
T Consensus        82 --~~~~~~~~~-~~~--------------~~~--~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~  135 (235)
T 2w0m_A           82 --EKKLIIIDA-LMK--------------EKE--D----QWS---LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSAL  135 (235)
T ss_dssp             --TTTEEEEEC-CC--------------------C----TTB---CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGG
T ss_pred             --hCCEEEEec-ccc--------------ccC--c----eee---ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHh
Confidence              001111100 000              000  0    001   12348999988888877778999  9999999988


Q ss_pred             C--CHHHHHHHHHHHHHhc--CCCeEEEEecCc--------hhhhh-cCEEEEEeCC
Q 048556          430 L--DAESERVVQEALDKIM--INRTTVIVAHRL--------STVRN-ADLIAVIHQG  473 (478)
Q Consensus       430 L--D~~~~~~i~~~l~~~~--~~~t~i~itH~~--------~~~~~-~d~i~vl~~G  473 (478)
                      +  |+.....+++.|+++.  .++|+|+++|..        ..+.. ||+|++|++.
T Consensus       136 ~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~  192 (235)
T 2w0m_A          136 FLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM  192 (235)
T ss_dssp             SSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred             hcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence            8  9988889999998764  478999999998        44555 9999999754

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.72  E-value=7.8e-19  Score=196.32  Aligned_cols=136  Identities=18%  Similarity=0.177  Sum_probs=96.6

Q ss_pred             CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCC-------C
Q 048556          275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEP-------V  347 (478)
Q Consensus       275 ~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~-------~  347 (478)
                      +..+++|+||++++|++++|+||||||||||+|++++..-..+                    .-+++|++.       .
T Consensus       659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq--------------------~g~~vpa~~~~i~~~d~  718 (918)
T 3thx_B          659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQ--------------------IGSYVPAEEATIGIVDG  718 (918)
T ss_dssp             SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHH--------------------HTCCBSSSEEEEECCSE
T ss_pred             CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhh--------------------cCccccchhhhhhHHHH
Confidence            3579999999999999999999999999999999975421110                    011222211       1


Q ss_pred             CCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCC
Q 048556          348 LFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT  427 (478)
Q Consensus       348 lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpt  427 (478)
                      +|..       +                 ++.+           .+..+...+|+|++|+..++|+ +.+|+++||||||
T Consensus       719 i~~~-------i-----------------g~~d-----------~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~  762 (918)
T 3thx_B          719 IFTR-------M-----------------GAAD-----------NIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELG  762 (918)
T ss_dssp             EEEE-------C--------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTT
T ss_pred             HHHh-------C-----------------ChHH-----------HHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCC
Confidence            1110       0                 0111           1112235789999999999999 8899999999999


Q ss_pred             CCCCHHHHHHHH-HHHHHhc--CCCeEEEEecCchhhhhcCE
Q 048556          428 SALDAESERVVQ-EALDKIM--INRTTVIVAHRLSTVRNADL  466 (478)
Q Consensus       428 s~LD~~~~~~i~-~~l~~~~--~~~t~i~itH~~~~~~~~d~  466 (478)
                      +|+|+.....+. ..++.+.  .++|+|++||+++..+.+|+
T Consensus       763 ~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~  804 (918)
T 3thx_B          763 RGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKN  804 (918)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhh
Confidence            999999888887 5555552  47899999999988765554

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=99.72  E-value=4.6e-20  Score=182.00  Aligned_cols=130  Identities=12%  Similarity=0.068  Sum_probs=96.2

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCC--
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGA--  364 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~--  364 (478)
                      +++.+++|+||||||||||++.|.+++.+. |.              . ++.+.+|+||+++|+.+.++|+.++.++.  
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~--------------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l   92 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-YG--------------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKL   92 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-HG--------------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-CC--------------C-CceEEEeccccccCChHHHHHHhccccccch
Confidence            457899999999999999999999999874 30              1 45566779999999999999998753210  


Q ss_pred             -CHHHHHHHHHHhcHHHHHHhCCCCcccc------ccCCCCCCChHHHHHHHHH--HHHcCCCCEEEEeCCCCCCCHHH
Q 048556          365 -SIAEIMAAAELANAAKFIDSLPQGLDTM------VGEHGTQLSGGQKQRIAIA--RAILKDPRILLLDEATSALDAES  434 (478)
Q Consensus       365 -~~~~~~~a~~~~~~~~~i~~lp~g~~t~------~~~~g~~LSgGq~Qrl~lA--Rall~~~~ililDEpts~LD~~~  434 (478)
                       .......+.+...+.+++..+++|++|.      +...+..+||||+||+++|  |++  +|+|+|+||||+++|+..
T Consensus        93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~  169 (290)
T 1odf_A           93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL  169 (290)
T ss_dssp             GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred             hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence             0000011222345677899999998764      4567889999999999998  565  899999999999999853

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.71  E-value=2.6e-17  Score=149.84  Aligned_cols=78  Identities=24%  Similarity=0.314  Sum_probs=70.9

Q ss_pred             CCCCChHHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEE--
Q 048556          397 GTQLSGGQKQRIAIARAIL----KDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVI--  470 (478)
Q Consensus       397 g~~LSgGq~Qrl~lARall----~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl--  470 (478)
                      ...||||||||++|||+++    ++|+++||||||++||+.+++.+.+.|++..++.++|+|||+...+..||+++.+  
T Consensus        62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~  141 (173)
T 3kta_B           62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSM  141 (173)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred             cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEe
Confidence            4689999999999999996    5679999999999999999999999999988788999999999998899999855  


Q ss_pred             eCCE
Q 048556          471 HQGK  474 (478)
Q Consensus       471 ~~G~  474 (478)
                      ++|.
T Consensus       142 ~~g~  145 (173)
T 3kta_B          142 RDGV  145 (173)
T ss_dssp             ETTE
T ss_pred             cCCE
Confidence            5674

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.70  E-value=6.2e-18  Score=187.40  Aligned_cols=162  Identities=17%  Similarity=0.194  Sum_probs=108.0

Q ss_pred             cEEEEeEEEECCCC----CCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-CccEEEECCeecCCCCHHH
Q 048556          260 DIELKDIYFSYPSR----PGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVLIDGVNLKEFQLKW  334 (478)
Q Consensus       260 ~i~~~~v~~~y~~~----~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-~~G~i~~~g~~~~~~~~~~  334 (478)
                      .+++++.  ++|--    ++..+++|+||+ ++|++++|+||||||||||+|+++|+..+ ..|.      .+..     
T Consensus       577 ~i~i~~~--rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa-----  642 (800)
T 1wb9_A          577 GIRITEG--RHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA-----  642 (800)
T ss_dssp             CEEEEEE--CCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS-----
T ss_pred             CEEEEec--cccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch-----
Confidence            4777764  23210    134689999999 99999999999999999999999997532 2231      1111     


Q ss_pred             hhcceEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556          335 IRGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA  413 (478)
Q Consensus       335 ~r~~i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa  413 (478)
                      -+..+++++|   +|.. ++.||+..+                                    ...+|+++++ ++.+..
T Consensus       643 ~~~~i~~~~~---i~~~~~~~d~l~~~------------------------------------~stf~~e~~~-~~~il~  682 (800)
T 1wb9_A          643 QKVEIGPIDR---IFTRVGAADDLASG------------------------------------RSTFMVEMTE-TANILH  682 (800)
T ss_dssp             SEEEECCCCE---EEEEEC-----------------------------------------------CHHHHHH-HHHHHH
T ss_pred             hcccceeHHH---HHhhCCHHHHHHhh------------------------------------hhhhhHHHHH-HHHHHH
Confidence            1234666665   4543 555554321                                    1235666654 444455


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhc--CCCeEEEEecCchhhhhcCEEEEEeCCEE
Q 048556          414 ILKDPRILLLDEATSALDAESERVV-QEALDKIM--INRTTVIVAHRLSTVRNADLIAVIHQGKL  475 (478)
Q Consensus       414 ll~~~~ililDEpts~LD~~~~~~i-~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~vl~~G~i  475 (478)
                      .+.+|+++||||||+|+|+.....+ ++.++.+.  .++|+|++||+.+....||++..+++|++
T Consensus       683 ~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~  747 (800)
T 1wb9_A          683 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHL  747 (800)
T ss_dssp             HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEE
T ss_pred             hccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEE
Confidence            6899999999999999998866665 55666654  37899999999988877888766777765

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.67  E-value=1.5e-17  Score=171.10  Aligned_cols=181  Identities=13%  Similarity=0.108  Sum_probs=116.5

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCE--EEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhc
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTT--AALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRG  337 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~--~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~  337 (478)
                      .+++++ ++.|++   .+ |+++||++++|++  ++|+||||||||||+++|+|+.        ++|.++...+....++
T Consensus        16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~   82 (427)
T 2qag_B           16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ   82 (427)
T ss_dssp             -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred             eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence            356666 788853   35 9999999999999  9999999999999999999994        3444444333333456


Q ss_pred             ceEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHH---HhcHHHHHHhC-------CCCcccc-------ccCCCCC
Q 048556          338 KIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAE---LANAAKFIDSL-------PQGLDTM-------VGEHGTQ  399 (478)
Q Consensus       338 ~i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~---~~~~~~~i~~l-------p~g~~t~-------~~~~g~~  399 (478)
                      .++|++|++.++.. |+.||+.++.. .+.+..++...   ...+.+++...       +..-|+.       +-+.+..
T Consensus        83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~-~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~  161 (427)
T 2qag_B           83 SNTYDLQESNVRLKLTIVSTVGFGDQ-INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS  161 (427)
T ss_dssp             EEEEEEEC--CEEEEEEEEEECCCC--CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC--
T ss_pred             eEEEEeecCccccccchhhhhhhhhc-cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC
Confidence            89999999998854 99999999864 23322222110   11222333322       1112222       2344556


Q ss_pred             CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hc-CCCeEEEEecC
Q 048556          400 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDK-IM-INRTTVIVAHR  457 (478)
Q Consensus       400 LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~-~~-~~~t~i~itH~  457 (478)
                      |+-.+   +.++++|-.+++++++|+||..|.+.....+.+.+++ +. .+..++.++.+
T Consensus       162 l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~  218 (427)
T 2qag_B          162 LKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD  218 (427)
T ss_dssp             -CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred             CCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence            77666   7999999999999999999999999988888888876 54 46778888754

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.66  E-value=1.4e-16  Score=155.98  Aligned_cols=151  Identities=19%  Similarity=0.244  Sum_probs=101.1

Q ss_pred             eecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHh-cCCCC
Q 048556          285 SIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNIN-YGKDG  363 (478)
Q Consensus       285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~-~~~~~  363 (478)
                      .+++|++++|+||||||||||++.+++...  .|++ +.|.+...      +..+.|++.+...  ..+.+++. ++. +
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~-~~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-~   93 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD-LLEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-H   93 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC-TTCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT-T
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCC-cCCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh-h
Confidence            478999999999999999999999999765  4666 34544321      3467888776532  22333322 222 1


Q ss_pred             CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCC--CCCHHHH---HHH
Q 048556          364 ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS--ALDAESE---RVV  438 (478)
Q Consensus       364 ~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts--~LD~~~~---~~i  438 (478)
                      ...++...         .++.+  ++....+.....||+||.|++   |+++++|+++|+||||+  ++|....   ..+
T Consensus        94 ~~~~~~~~---------~~~~l--~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~  159 (279)
T 1nlf_A           94 LSAEERQA---------VADGL--LIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQV  159 (279)
T ss_dssp             SCHHHHHH---------HHHHE--EECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHH
T ss_pred             cChhhhhh---------ccCce--EEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHH
Confidence            22222211         22222  344445667888999998765   78899999999999999  9997544   778


Q ss_pred             HHHHHHhc--CCCeEEEEecCchhh
Q 048556          439 QEALDKIM--INRTTVIVAHRLSTV  461 (478)
Q Consensus       439 ~~~l~~~~--~~~t~i~itH~~~~~  461 (478)
                      ++.|+++.  .++|+|+++|.....
T Consensus       160 ~~~L~~l~~~~g~tvi~i~H~~~~~  184 (279)
T 1nlf_A          160 IGRMEAIAADTGCSIVFLHHASKGA  184 (279)
T ss_dssp             HHHHHHHHHHHCCEEEEEEEC----
T ss_pred             HHHHHHHHHHcCCEEEEEecCCCcc
Confidence            88887764  378999999988654

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.66  E-value=1.9e-16  Score=148.52  Aligned_cols=152  Identities=14%  Similarity=0.130  Sum_probs=97.5

Q ss_pred             Cccccccee-eecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHH
Q 048556          276 EQIFNGFSL-SIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIK  354 (478)
Q Consensus       276 ~~~l~~is~-~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~  354 (478)
                      .+.|+++.. .+++|++++|+||||||||||++.+++  .+..+.++++..+  ..+.+                  .++
T Consensus         6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~------------------~~~   63 (220)
T 2cvh_A            6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPE------------------RLV   63 (220)
T ss_dssp             CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHH------------------HHH
T ss_pred             cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHH------------------HHH
Confidence            356777765 799999999999999999999999999  3333344443321  11111                  222


Q ss_pred             HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChH--HHHHHHHHHHHcCC-CCEEEEeCCCCCCC
Q 048556          355 DNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGG--QKQRIAIARAILKD-PRILLLDEATSALD  431 (478)
Q Consensus       355 eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgG--q~Qrl~lARall~~-~~ililDEpts~LD  431 (478)
                      +.....  ....++            +.+.+      .+    ...|++  ++|+++.+|+++++ |+++++||||+.+|
T Consensus        64 ~~~~~~--~~~~~~------------~~~~~------~~----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~  119 (220)
T 2cvh_A           64 QMAETR--GLNPEE------------ALSRF------IL----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYR  119 (220)
T ss_dssp             HHHHTT--TCCHHH------------HHHHE------EE----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTT
T ss_pred             HHHHhc--CCChHH------------HhhcE------EE----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhh
Confidence            221110  011111            11111      01    123344  46789999999986 99999999999999


Q ss_pred             HHHH--------HHHHHHHHHhcC--CCeEEEEecCch-------------hhh-hcCEEEEEeCC
Q 048556          432 AESE--------RVVQEALDKIMI--NRTTVIVAHRLS-------------TVR-NADLIAVIHQG  473 (478)
Q Consensus       432 ~~~~--------~~i~~~l~~~~~--~~t~i~itH~~~-------------~~~-~~d~i~vl~~G  473 (478)
                      +..+        ..+.+.|+++.+  ++|+|+++|...             .++ .||++++|++.
T Consensus       120 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~  185 (220)
T 2cvh_A          120 AEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL  185 (220)
T ss_dssp             GGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred             hcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence            7432        345555666543  789999999865             344 49999999754

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.66  E-value=1.8e-18  Score=159.17  Aligned_cols=160  Identities=15%  Similarity=0.056  Sum_probs=101.0

Q ss_pred             eecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCC
Q 048556          285 SIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGA  364 (478)
Q Consensus       285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~  364 (478)
                      .+++|++++|+||||||||||++.|+|.  |+.|.|.++|.++.....  .++.++|++|++. ...|+.+|+.+..   
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~---   76 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVA---   76 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHH---
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHH---
Confidence            5789999999999999999999999998  678999999987643221  1345678888664 3458888886421   


Q ss_pred             CHHHHHHHHHHhcHHHHHHhCC--CCccccc--cCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH
Q 048556          365 SIAEIMAAAELANAAKFIDSLP--QGLDTMV--GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQE  440 (478)
Q Consensus       365 ~~~~~~~a~~~~~~~~~i~~lp--~g~~t~~--~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~  440 (478)
                         ...  . ..+....++...  .+++...  +.....+|+|++||+++||++.++|+++        +|+...+.+.+
T Consensus        77 ---~~~--~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~  142 (191)
T 1zp6_A           77 ---GRY--A-KEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS  142 (191)
T ss_dssp             ---HHH--H-HTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred             ---HHH--h-ccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence               000  0 000000000000  0111111  2344679999999999999999999876        58887777777


Q ss_pred             HHHHhcCCCeEEEEecCchhhhhcCE
Q 048556          441 ALDKIMINRTTVIVAHRLSTVRNADL  466 (478)
Q Consensus       441 ~l~~~~~~~t~i~itH~~~~~~~~d~  466 (478)
                      .+..+.....+++.|++.+.-+.+++
T Consensus       143 ~~~~l~~~~~~~i~t~~~~~~~~~~~  168 (191)
T 1zp6_A          143 QFADLGAFEHHVLPVSGKDTDQALQS  168 (191)
T ss_dssp             HTTCCGGGGGGEEECTTCCTTTTTTT
T ss_pred             HHhccCcccccEEECCCCCHHHHHHH
Confidence            77654332244455554333233443

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.63  E-value=2.6e-17  Score=155.71  Aligned_cols=129  Identities=13%  Similarity=0.088  Sum_probs=93.4

Q ss_pred             eeeecCCCEEEEEcCCCCChHHHHHHHhccCCC--CccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc-cH----HH
Q 048556          283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SI----KD  355 (478)
Q Consensus       283 s~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti----~e  355 (478)
                      .-..++|++++|+||||||||||+++|+|+++|  ..|.|.+++.+...    ..++.++|++|++..|.. |+    .|
T Consensus        10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E   85 (219)
T 1s96_A           10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLE   85 (219)
T ss_dssp             -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred             cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHH
Confidence            346799999999999999999999999999986  68999998876543    135679999999988865 44    45


Q ss_pred             HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHH
Q 048556          356 NINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE  435 (478)
Q Consensus       356 Nl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~  435 (478)
                      |+.+.....                                     |-.+++   ++.++..++++|||     ||+.+.
T Consensus        86 ~~~~~~~~y-------------------------------------g~~~~~---v~~~l~~G~illLD-----LD~~~~  120 (219)
T 1s96_A           86 HAEVFGNYY-------------------------------------GTSREA---IEQVLATGVDVFLD-----IDWQGA  120 (219)
T ss_dssp             EEEETTEEE-------------------------------------EEEHHH---HHHHHTTTCEEEEE-----CCHHHH
T ss_pred             HHHHHhccC-------------------------------------CCCHHH---HHHHHhcCCeEEEE-----ECHHHH
Confidence            554421100                                     000111   23344457999999     999999


Q ss_pred             HHHHHHHHHhcCCCeEEEEecCchhhhh
Q 048556          436 RVVQEALDKIMINRTTVIVAHRLSTVRN  463 (478)
Q Consensus       436 ~~i~~~l~~~~~~~t~i~itH~~~~~~~  463 (478)
                      +.+.+.+.   ++.|++++||+++.++.
T Consensus       121 ~~i~~~l~---~~~tI~i~th~~~~l~~  145 (219)
T 1s96_A          121 QQIRQKMP---HARSIFILPPSKIELDR  145 (219)
T ss_dssp             HHHHHHCT---TCEEEEEECSSHHHHHH
T ss_pred             HHHHHHcc---CCEEEEEECCCHHHHHH
Confidence            99998875   47899999999988765

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=99.63  E-value=4.5e-19  Score=177.31  Aligned_cols=154  Identities=19%  Similarity=0.189  Sum_probs=109.6

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccC--------CCCccEEEECCeecCCCC---------------HHHhhcceEEE---e
Q 048556          290 TTAALVGQSGSGKSTVISLIERFY--------DPQAGEVLIDGVNLKEFQ---------------LKWIRGKIGLV---S  343 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~--------~~~~G~i~~~g~~~~~~~---------------~~~~r~~i~~v---~  343 (478)
                      ++++|+|+||||||||+|.|+|..        .|+.|+|.+||.++...+               ..++++.++++   +
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~   84 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL   84 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence            589999999999999999999998        789999999999987653               34567788888   7


Q ss_pred             cCCCC-CcccHHHHHhcCCCCCCHHHHHHHH-HHhcHHHHHHhCCCCccccccC-----CCCCCChHHHHHHHHHHHHcC
Q 048556          344 QEPVL-FTSSIKDNINYGKDGASIAEIMAAA-ELANAAKFIDSLPQGLDTMVGE-----HGTQLSGGQKQRIAIARAILK  416 (478)
Q Consensus       344 Q~~~l-f~~ti~eNl~~~~~~~~~~~~~~a~-~~~~~~~~i~~lp~g~~t~~~~-----~g~~LSgGq~Qrl~lARall~  416 (478)
                      |++.+ |+.++.||..++.|.    .+.+.. ......+. ..+ ++.-+.++-     .-.++|+||+||...+++++.
T Consensus        85 q~~~~~~~~~v~E~~~l~~p~----~~~~~~~~~~~~~~~-~~l-~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~  158 (318)
T 1nij_A           85 DKGNIQFDRLVIECTGMADPG----PIIQTFFSHEVLCQR-YLL-DGVIALVDAVHADEQMNQFTIAQSQVGYADRILLT  158 (318)
T ss_dssp             HHTSCCCSEEEEEEETTCCHH----HHHHHHHHSHHHHHH-EEE-EEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEE
T ss_pred             hcCCCCCCEEEEeCCCCCCHH----HHHHHHhcCccccCe-EEE-CCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEE
Confidence            87764 567999999887642    221111 00000000 000 011122211     012689999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchh
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLST  460 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~  460 (478)
                      +|+++  |||         +.+.+.++++.++.|++++||+...
T Consensus       159 k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~  191 (318)
T 1nij_A          159 KTDVA--GEA---------EKLHERLARINARAPVYTVTHGDID  191 (318)
T ss_dssp             CTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCCC
T ss_pred             CcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCCC
Confidence            99877  888         6788888887778999999997543

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=99.61  E-value=1.2e-18  Score=163.33  Aligned_cols=149  Identities=15%  Similarity=0.180  Sum_probs=105.2

Q ss_pred             ecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCC-CCC
Q 048556          286 IPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGK-DGA  364 (478)
Q Consensus       286 i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~-~~~  364 (478)
                      .++|++++|+||||||||||+++|+|+++|+ |                  ..+++|+++.+.++.+..+|+.... ...
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~   79 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA   79 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence            5789999999999999999999999999976 4                  2578888888878777777754211 111


Q ss_pred             CHHHHHHHHHHhcHHHHHHhCCCC--ccccccCCCCCCChHHHHHHHHH-HHHcCCCCEEEEeCCC-----------CCC
Q 048556          365 SIAEIMAAAELANAAKFIDSLPQG--LDTMVGEHGTQLSGGQKQRIAIA-RAILKDPRILLLDEAT-----------SAL  430 (478)
Q Consensus       365 ~~~~~~~a~~~~~~~~~i~~lp~g--~~t~~~~~g~~LSgGq~Qrl~lA-Rall~~~~ililDEpt-----------s~L  430 (478)
                      .     .+.+...+.+.+..++.|  +++.+.+++..+|+||+||+++| |+++.++.++++|||.           ..+
T Consensus        80 ~-----~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~v  154 (208)
T 3c8u_A           80 P-----ETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRL  154 (208)
T ss_dssp             G-----GGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEE
T ss_pred             C-----chhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEE
Confidence            0     011112223344444444  77888999999999999999998 9999999999999985           346


Q ss_pred             CHHHHHHHHHHHHHhc-CCCeEEEEecCc
Q 048556          431 DAESERVVQEALDKIM-INRTTVIVAHRL  458 (478)
Q Consensus       431 D~~~~~~i~~~l~~~~-~~~t~i~itH~~  458 (478)
                      |...+..+...+++.. .+.|.--+.|+.
T Consensus       155 d~~~~~~~~R~~~R~~~~g~t~~~~~~~~  183 (208)
T 3c8u_A          155 EVPMADLEARLVQRWLDHGLNHDAAVARA  183 (208)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             eCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            7777666666666542 244444444443

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.57  E-value=7e-18  Score=169.94  Aligned_cols=179  Identities=13%  Similarity=0.158  Sum_probs=118.7

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH----HHhh
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL----KWIR  336 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~----~~~r  336 (478)
                      ++++|+++.|..   ..+++++||++++|++++|+||||||||||++.|+|++.|++|+|.+.|.++.....    ...+
T Consensus        30 ie~~~~~~~~~~---~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~  106 (337)
T 2qm8_A           30 AESRRADHRAAV---RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK  106 (337)
T ss_dssp             HTCSSHHHHHHH---HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred             HeeCCcccccCh---HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence            445566667742   468999999999999999999999999999999999999999999999998754321    2346


Q ss_pred             cceEEEecCCCCCc----------cc---HHHHHhc---C-C-------CCC--CHHHHHHHHH-------------Hhc
Q 048556          337 GKIGLVSQEPVLFT----------SS---IKDNINY---G-K-------DGA--SIAEIMAAAE-------------LAN  377 (478)
Q Consensus       337 ~~i~~v~Q~~~lf~----------~t---i~eNl~~---~-~-------~~~--~~~~~~~a~~-------------~~~  377 (478)
                      +++++++|++.+|.          ||   .+|.+..   . .       +..  ++..+.+.++             ...
T Consensus       107 ~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~  186 (337)
T 2qm8_A          107 TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQG  186 (337)
T ss_dssp             GGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------
T ss_pred             hhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHH
Confidence            78999999998885          22   2332210   0 0       000  0001100000             000


Q ss_pred             HHHHHHhCCCCcc-ccccC-CCCCCChHHHHHHHHHHHHcC------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc
Q 048556          378 AAKFIDSLPQGLD-TMVGE-HGTQLSGGQKQRIAIARAILK------DPRILLLDEATSALDAESERVVQEALDKIM  446 (478)
Q Consensus       378 ~~~~i~~lp~g~~-t~~~~-~g~~LSgGq~Qrl~lARall~------~~~ililDEpts~LD~~~~~~i~~~l~~~~  446 (478)
                      +.+.+...|.-+- +.... ....+|+|++|+++.|++++.      +|+++.    ||++|......+++.|.+..
T Consensus       187 i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~  259 (337)
T 2qm8_A          187 IKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR  259 (337)
T ss_dssp             CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred             HHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence            0001112222110 11221 124579999999999999998      688876    99999999999999987754

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=99.56  E-value=2.3e-15  Score=143.30  Aligned_cols=148  Identities=16%  Similarity=0.222  Sum_probs=90.9

Q ss_pred             eecCCCEEEEEcCCCCChHHHHHHHhc--cCCC-----CccEEEECCeecCC-CCHHHhhcceEEEecCCCCCcccHHHH
Q 048556          285 SIPSGTTAALVGQSGSGKSTVISLIER--FYDP-----QAGEVLIDGVNLKE-FQLKWIRGKIGLVSQEPVLFTSSIKDN  356 (478)
Q Consensus       285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g--~~~~-----~~G~i~~~g~~~~~-~~~~~~r~~i~~v~Q~~~lf~~ti~eN  356 (478)
                      -+++|++++|+||||||||||++.+++  ..+|     ..|.+++++.+... .....+++.+++.+|+       +.+|
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~   92 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN   92 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred             CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence            589999999999999999999999999  4554     57888888866311 1122334455555542       4566


Q ss_pred             HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH---
Q 048556          357 INYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE---  433 (478)
Q Consensus       357 l~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~---  433 (478)
                      +.+..+ .+.++..+.++.  +.+.+.                               -.+|+++++|||++.+|+.   
T Consensus        93 ~~~~~~-~~~~~~~~~~~~--~~~~~~-------------------------------~~~~~lliiD~~~~~~~~~~~~  138 (243)
T 1n0w_A           93 VAYARA-FNTDHQTQLLYQ--ASAMMV-------------------------------ESRYALLIVDSATALYRTDYSG  138 (243)
T ss_dssp             EEEEEC-CSHHHHHHHHHH--HHHHHH-------------------------------HSCEEEEEEETSSGGGC-----
T ss_pred             eEEEec-CCHHHHHHHHHH--HHHHHh-------------------------------cCCceEEEEeCchHHHHHHhcC
Confidence            555432 222232221110  111111                               1689999999999999985   


Q ss_pred             ----H-----HHHHHHHHHHhc--CCCeEEEEecCchhh-------------------h-hcCEEEEEeCC
Q 048556          434 ----S-----ERVVQEALDKIM--INRTTVIVAHRLSTV-------------------R-NADLIAVIHQG  473 (478)
Q Consensus       434 ----~-----~~~i~~~l~~~~--~~~t~i~itH~~~~~-------------------~-~~d~i~vl~~G  473 (478)
                          +     ...+++.|+++.  .++|+|+++|.....                   . .||.+++|+.|
T Consensus       139 ~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~  209 (243)
T 1n0w_A          139 RGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG  209 (243)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence                3     234555555543  378999999965432                   2 48999999865

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.53  E-value=6.5e-15  Score=153.49  Aligned_cols=151  Identities=19%  Similarity=0.285  Sum_probs=103.1

Q ss_pred             cccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC----HHH--hhcceEEEecCCCCCc-c
Q 048556          279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ----LKW--IRGKIGLVSQEPVLFT-S  351 (478)
Q Consensus       279 l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~----~~~--~r~~i~~v~Q~~~lf~-~  351 (478)
                      -+++||++++|++++|+|+||||||||++.|+|++.|++|+|.++|.|.....    ...  .|+.++|++|++.++. .
T Consensus       283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~  362 (503)
T 2yhs_A          283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS  362 (503)
T ss_dssp             BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred             CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence            35899999999999999999999999999999999999999999888765431    112  3678999999988765 4


Q ss_pred             cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccC-CC-----CCCChHHHHHHHHHHHHcC-CC-CEEEE
Q 048556          352 SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGE-HG-----TQLSGGQKQRIAIARAILK-DP-RILLL  423 (478)
Q Consensus       352 ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~-~g-----~~LSgGq~Qrl~lARall~-~~-~ilil  423 (478)
                      |+++|+.++...                        |+|..+=+ -|     .++-.--+|++.++|++.. .| .+++.
T Consensus       363 tV~e~l~~a~~~------------------------~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLv  418 (503)
T 2yhs_A          363 VIFDAIQAAKAR------------------------NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLT  418 (503)
T ss_dssp             HHHHHHHHHHHT------------------------TCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEE
T ss_pred             HHHHHHHHHHhc------------------------CCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEE
Confidence            999999765211                        11111100 01     1111123478888998754 35 35555


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecC
Q 048556          424 DEATSALDAESERVVQEALDKIMINRTTVIVAHR  457 (478)
Q Consensus       424 DEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~  457 (478)
                      .+||++.|....   .+.+.+ .-+.|.+++||-
T Consensus       419 LDattGq~al~~---ak~f~~-~~~itgvIlTKL  448 (503)
T 2yhs_A          419 IDASTGQNAVSQ---AKLFHE-AVGLTGITLTKL  448 (503)
T ss_dssp             EEGGGTHHHHHH---HHHHHH-HTCCSEEEEECG
T ss_pred             ecCcccHHHHHH---HHHHHh-hcCCCEEEEEcC
Confidence            558887655432   222222 136799999993

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.49  E-value=6.8e-15  Score=148.38  Aligned_cols=123  Identities=15%  Similarity=0.151  Sum_probs=85.7

Q ss_pred             cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC-CCccEEEEC-CeecCCCCHHHhhcceEEEecCCCCCcc-cH
Q 048556          277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-PQAGEVLID-GVNLKEFQLKWIRGKIGLVSQEPVLFTS-SI  353 (478)
Q Consensus       277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-~~~G~i~~~-g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti  353 (478)
                      .-++++++.+ +|++++|+||||||||||+|+|+|... |..|+|.++ |.+..    ...++.++++||++.+++. |+
T Consensus       204 ~gl~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv  278 (358)
T 2rcn_A          204 DGLKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGV  278 (358)
T ss_dssp             BTHHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHH
T ss_pred             cCHHHHHHhc-CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccH
Confidence            3577888754 799999999999999999999999999 999999987 76542    2345679999999998876 89


Q ss_pred             HHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556          354 KDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL  415 (478)
Q Consensus       354 ~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall  415 (478)
                      +++..   ...+.+++.+     .+.++++.+  |+....+....++| ||+||++||++++
T Consensus       279 ~e~~l---~~l~~~e~~~-----~~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gli  329 (358)
T 2rcn_A          279 REFGL---WHLEPEQITQ-----GFVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGAI  329 (358)
T ss_dssp             HTCCC---CCCCHHHHHH-----TSGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred             HHhhh---cCCCHHHHHH-----HHHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence            98632   2234444322     223344444  66666677788999 9999999999863

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.49  E-value=3.6e-16  Score=150.25  Aligned_cols=137  Identities=18%  Similarity=0.219  Sum_probs=97.2

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHh---ccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc-cHHHHHhcC---
Q 048556          288 SGTTAALVGQSGSGKSTVISLIE---RFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYG---  360 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~---g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNl~~~---  360 (478)
                      ++++++|+||||||||||+++|+   |+..|+.|+|.++|.+..    ..+...+.+++|++.+++. |+.+|+...   
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~  101 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN  101 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence            47999999999999999999999   999999999988776532    1234556677888777665 889988641   


Q ss_pred             ----------CCCCCHHHHHHHHHHhcHHHHHHhCC-CC------------ccccccCCCCCCChHHHHHHHHHHHH-cC
Q 048556          361 ----------KDGASIAEIMAAAELANAAKFIDSLP-QG------------LDTMVGEHGTQLSGGQKQRIAIARAI-LK  416 (478)
Q Consensus       361 ----------~~~~~~~~~~~a~~~~~~~~~i~~lp-~g------------~~t~~~~~g~~LSgGq~Qrl~lARal-l~  416 (478)
                                .+ .+.++...          +..+. -+            ++.........|||    |+   ||+ +.
T Consensus       102 ~~~~~~il~g~~-~~~~~~~~----------l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~  163 (246)
T 2bbw_A          102 RRGQHWLLDGFP-RTLGQAEA----------LDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFN  163 (246)
T ss_dssp             CTTSCEEEESCC-CSHHHHHH----------HHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTS
T ss_pred             cCCCeEEEECCC-CCHHHHHH----------HHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccC
Confidence                      11 12211111          11110 11            12222344567898    55   788 99


Q ss_pred             CCCEEEEe----CCCCCCCHHHHHHHHHHHHHhc
Q 048556          417 DPRILLLD----EATSALDAESERVVQEALDKIM  446 (478)
Q Consensus       417 ~~~ililD----Epts~LD~~~~~~i~~~l~~~~  446 (478)
                      +|++++||    |||+++|..+++.+.+.++.+.
T Consensus       164 ~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~  197 (246)
T 2bbw_A          164 PPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYK  197 (246)
T ss_dssp             CCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred             CCcccccccccccccccCCCCcHHHHHHHHHHHH
Confidence            99999999    9999999999999998887654

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=99.49  E-value=9.7e-17  Score=169.83  Aligned_cols=174  Identities=16%  Similarity=0.145  Sum_probs=119.8

Q ss_pred             cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCc-ccHHH
Q 048556          277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFT-SSIKD  355 (478)
Q Consensus       277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~e  355 (478)
                      ++++++++.+++|+.++|+||||||||||+++|+|+++|++|.|+++|.+--..+.   .+.++++.|...... .|.++
T Consensus       248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~~~~~~~~~~  324 (511)
T 2oap_1          248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGMGEGEIDMYD  324 (511)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCSSSCCBCHHH
T ss_pred             HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeecccccCCcCHHH
Confidence            47889999999999999999999999999999999999999999998876322221   356778887765222 27777


Q ss_pred             HHhcC---CC------CCCHHHHHHHHHHhc-------------HHHHHH---hCCCCcccccc-------CCCCCCChH
Q 048556          356 NINYG---KD------GASIAEIMAAAELAN-------------AAKFID---SLPQGLDTMVG-------EHGTQLSGG  403 (478)
Q Consensus       356 Nl~~~---~~------~~~~~~~~~a~~~~~-------------~~~~i~---~lp~g~~t~~~-------~~g~~LSgG  403 (478)
                      ++...   +|      ..++.|...+.+...             ..+.+.   ..|.|+...+.       .....+|||
T Consensus       325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G  404 (511)
T 2oap_1          325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGN  404 (511)
T ss_dssp             HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSS
T ss_pred             HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCC
Confidence            76533   23      345555555444321             223332   22334433222       223467999


Q ss_pred             HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEE--EecCchhhhh-cC
Q 048556          404 QKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI-NRTTVI--VAHRLSTVRN-AD  465 (478)
Q Consensus       404 q~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~--itH~~~~~~~-~d  465 (478)
                      |+||.++|.          + | |++||+.+.+.+++.+.++.+ ++|+++  +||+++.+.. |+
T Consensus       405 ~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g  458 (511)
T 2oap_1          405 TRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG  458 (511)
T ss_dssp             CEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred             CceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence            999987751          1 7 999999988777777766643 678875  8999998754 43

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.49  E-value=2.2e-14  Score=144.62  Aligned_cols=139  Identities=18%  Similarity=0.228  Sum_probs=79.1

Q ss_pred             CEEEEEcCCCCChHHHHHHHhc-cCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHH
Q 048556          290 TTAALVGQSGSGKSTVISLIER-FYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAE  368 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g-~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~  368 (478)
                      ..+.|+||+|+||||+++.+++ ++.|+.|.+.++|.+......  .+..+++++|.+++.-..- +   .+.  ...+.
T Consensus        37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~---~~~--~~~~~  108 (354)
T 1sxj_E           37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITPS-D---MGN--NDRIV  108 (354)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC----------CCHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecHh-h---cCC--cchHH
Confidence            3499999999999999999999 899999999999987654322  2677999999886531100 0   000  11111


Q ss_pred             HHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCC
Q 048556          369 IMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMIN  448 (478)
Q Consensus       369 ~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~  448 (478)
                      +.+..+     ++....  +++..+     .|||           +..+|+++|+|||++ ||+.+...+.+.+.+..++
T Consensus       109 ~~~~i~-----~~~~~~--~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~  164 (354)
T 1sxj_E          109 IQELLK-----EVAQME--QVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKN  164 (354)
T ss_dssp             HHHHHH-----HHTTTT--C----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTT
T ss_pred             HHHHHH-----HHHHhc--cccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCC
Confidence            222111     111111  222222     4666           778999999999999 9999999999999887677


Q ss_pred             CeEEEEecCchh
Q 048556          449 RTTVIVAHRLST  460 (478)
Q Consensus       449 ~t~i~itH~~~~  460 (478)
                      .++|++||+++.
T Consensus       165 ~~~Il~t~~~~~  176 (354)
T 1sxj_E          165 IRLIMVCDSMSP  176 (354)
T ss_dssp             EEEEEEESCSCS
T ss_pred             CEEEEEeCCHHH
Confidence            899999999764

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.48  E-value=1.5e-15  Score=136.21  Aligned_cols=87  Identities=16%  Similarity=0.096  Sum_probs=71.9

Q ss_pred             EeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEe
Q 048556          264 KDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVS  343 (478)
Q Consensus       264 ~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~  343 (478)
                      +|+++.|.   +..+++++||++++|++++|+||||||||||+|+|+|++ |++|+|.++|.++....  ..+   .+++
T Consensus        11 ~~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~--~~~---~~~~   81 (158)
T 1htw_A           11 EFSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEY--NIA---GKMI   81 (158)
T ss_dssp             HHHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEE--EET---TEEE
T ss_pred             HHHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeec--cCC---Ccce
Confidence            45667774   246899999999999999999999999999999999999 99999999998874311  112   2799


Q ss_pred             cCCCCCcccHHHHHhc
Q 048556          344 QEPVLFTSSIKDNINY  359 (478)
Q Consensus       344 Q~~~lf~~ti~eNl~~  359 (478)
                      |++.+|.-|+.||+.+
T Consensus        82 q~~~l~~ltv~e~l~~   97 (158)
T 1htw_A           82 YHFDLYRLADPEELEF   97 (158)
T ss_dssp             EEEECTTCSCTTHHHH
T ss_pred             eccccccCCcHHHHHH
Confidence            9998886699999853

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=99.48  E-value=2.3e-18  Score=158.52  Aligned_cols=154  Identities=14%  Similarity=0.096  Sum_probs=103.8

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCc-ccHHHHHhcCCCCCCHH
Q 048556          289 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFT-SSIKDNINYGKDGASIA  367 (478)
Q Consensus       289 G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~eNl~~~~~~~~~~  367 (478)
                      |++++|+||||||||||++.|++   |.+|.++++|.++...      ...++++|....+. .|+++|+.+..      
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~------   66 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDLT------   66 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHHH------
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHHH------
Confidence            68899999999999999999997   6679999988665331      24567777664333 37777765310      


Q ss_pred             HHHHHHHHhcHHHHHHhCCCCccccccC--------CCCCC--ChHHHHHHHHHH------HHcCCCCEEEEeCCCCCCC
Q 048556          368 EIMAAAELANAAKFIDSLPQGLDTMVGE--------HGTQL--SGGQKQRIAIAR------AILKDPRILLLDEATSALD  431 (478)
Q Consensus       368 ~~~~a~~~~~~~~~i~~lp~g~~t~~~~--------~g~~L--SgGq~Qrl~lAR------all~~~~ililDEpts~LD  431 (478)
                            +     .+..   .|.+..+..        .-..+  |+|++|++.++.      +++++|+...+|+   ++|
T Consensus        67 ------~-----~~~~---~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld  129 (189)
T 2bdt_A           67 ------V-----NFLL---AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMG  129 (189)
T ss_dssp             ------H-----HHHH---TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------C
T ss_pred             ------H-----HHHh---cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCC
Confidence                  0     0000   011111100        00123  788888887777      8888888878884   899


Q ss_pred             HHHHHHHHHHHHHhcC-CCeEEEEecC-chhhhh-cCEEEEEeCCEEee
Q 048556          432 AESERVVQEALDKIMI-NRTTVIVAHR-LSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       432 ~~~~~~i~~~l~~~~~-~~t~i~itH~-~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +...+. ++.+....+ +.++|.+||. ++.++. ||+|+  ++|+++.
T Consensus       130 ~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~  175 (189)
T 2bdt_A          130 ERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIF  175 (189)
T ss_dssp             GGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSC
T ss_pred             HHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEE
Confidence            987777 788877643 5799999999 888776 99998  9998753

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.48  E-value=8.7e-14  Score=141.85  Aligned_cols=74  Identities=28%  Similarity=0.419  Sum_probs=67.8

Q ss_pred             CCCChHHHHHH------HHHHHHcCC-CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEE
Q 048556          398 TQLSGGQKQRI------AIARAILKD-PRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVI  470 (478)
Q Consensus       398 ~~LSgGq~Qrl------~lARall~~-~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl  470 (478)
                      ..|||||+||+      ++|||+..+ |+++||||||++||+.+...+.+.|.++.+++++|++||++.....||++++|
T Consensus       279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l  358 (371)
T 3auy_A          279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV  358 (371)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred             HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence            58999999987      678999999 99999999999999999999999998876667999999999876679999999


Q ss_pred             e
Q 048556          471 H  471 (478)
Q Consensus       471 ~  471 (478)
                      +
T Consensus       359 ~  359 (371)
T 3auy_A          359 K  359 (371)
T ss_dssp             E
T ss_pred             E
Confidence            7

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.47  E-value=4.5e-14  Score=141.31  Aligned_cols=164  Identities=15%  Similarity=0.100  Sum_probs=108.1

Q ss_pred             eecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHH----hhc--ceEEEecCCCCCcc-cHHHHH
Q 048556          285 SIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW----IRG--KIGLVSQEPVLFTS-SIKDNI  357 (478)
Q Consensus       285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~----~r~--~i~~v~Q~~~lf~~-ti~eNl  357 (478)
                      ..++|++++|+|||||||||+++.|+|++.|++|+|.++|.|+......+    +++  .+.+++|+..+++. |+++|+
T Consensus       125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l  204 (328)
T 3e70_C          125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI  204 (328)
T ss_dssp             SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence            45789999999999999999999999999999999999999987765322    233  35599999988875 899999


Q ss_pred             hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHH
Q 048556          358 NYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERV  437 (478)
Q Consensus       358 ~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~  437 (478)
                      .++..             .+. +.+     =+||. |... .-..=..+.-.++|++..++++++||.+|. .|      
T Consensus       205 ~~~~~-------------~~~-d~v-----liDta-G~~~-~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~------  256 (328)
T 3e70_C          205 QHAKA-------------RGI-DVV-----LIDTA-GRSE-TNRNLMDEMKKIARVTKPNLVIFVGDALAG-NA------  256 (328)
T ss_dssp             HHHHH-------------HTC-SEE-----EEEEC-CSCC-TTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-TH------
T ss_pred             HHHHh-------------ccc-hhh-----HHhhc-cchh-HHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HH------
Confidence            75310             000 000     01221 1100 011123344458999999999999996665 22      


Q ss_pred             HHHHHHHhc--CCCeEEEEecCchhh----------hhcCEEEEEeCCEEe
Q 048556          438 VQEALDKIM--INRTTVIVAHRLSTV----------RNADLIAVIHQGKLV  476 (478)
Q Consensus       438 i~~~l~~~~--~~~t~i~itH~~~~~----------~~~d~i~vl~~G~i~  476 (478)
                      +.+.++.+.  .+.|.|++||--.+.          ...-.|..+..|+-+
T Consensus       257 ~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v  307 (328)
T 3e70_C          257 IVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY  307 (328)
T ss_dssp             HHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred             HHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence            233333332  367999999954321          113467777777543

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=99.46  E-value=9.1e-17  Score=165.86  Aligned_cols=128  Identities=14%  Similarity=0.160  Sum_probs=88.4

Q ss_pred             ccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCC----CHHHhhcceEEEe---------c
Q 048556          278 IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEF----QLKWIRGKIGLVS---------Q  344 (478)
Q Consensus       278 ~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~----~~~~~r~~i~~v~---------Q  344 (478)
                      +|+++ + .++|++++|+||||||||||+++|+|+++|++|+|.++|.++...    +...+++.+++.+         |
T Consensus       158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq  235 (418)
T 1p9r_A          158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ  235 (418)
T ss_dssp             HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred             HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence            56665 4 379999999999999999999999999999999999999877321    1122344555544         8


Q ss_pred             CCCCC--c-----ccHHHHHhcCCC---------CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 048556          345 EPVLF--T-----SSIKDNINYGKD---------GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRI  408 (478)
Q Consensus       345 ~~~lf--~-----~ti~eNl~~~~~---------~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl  408 (478)
                      +|.++  .     .|+.+|+.++..         ..+..+....+...           |++...  ....|||||+|| 
T Consensus       236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~l-----------gl~~~~--~~~~LSgg~~QR-  301 (418)
T 1p9r_A          236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDM-----------GIEPFL--ISSSLLGVLAQR-  301 (418)
T ss_dssp             CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHH-----------TCCHHH--HHHHEEEEEEEE-
T ss_pred             CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHc-----------CCcHHH--HHHHHHHHHHHH-
Confidence            88763  2     388998876321         01112222222222           232221  346799999999 


Q ss_pred             HHHHHHcCCCCEEE
Q 048556          409 AIARAILKDPRILL  422 (478)
Q Consensus       409 ~lARall~~~~ili  422 (478)
                       |||+++.+|++..
T Consensus       302 -LaraL~~~p~~~~  314 (418)
T 1p9r_A          302 -LVRTLCPDCKEPY  314 (418)
T ss_dssp             -EEEEECTTTCEEE
T ss_pred             -hhhhhcCCCCccC
Confidence             9999999999875

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.45  E-value=9.8e-14  Score=123.15  Aligned_cols=91  Identities=15%  Similarity=0.218  Sum_probs=69.8

Q ss_pred             ccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCcc--EEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHH
Q 048556          278 IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG--EVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKD  355 (478)
Q Consensus       278 ~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G--~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~e  355 (478)
                      +|+++     +|+.++|+||+|||||||++++++.+.+ +|  .+++++.++...                         
T Consensus        30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~-------------------------   78 (149)
T 2kjq_A           30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT-------------------------   78 (149)
T ss_dssp             HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred             HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence            46665     8999999999999999999999999987 47  555544332110                         


Q ss_pred             HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHH
Q 048556          356 NINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE  435 (478)
Q Consensus       356 Nl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~  435 (478)
                                                                               +++.+|++|++|||++ +|...+
T Consensus        79 ---------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~  100 (149)
T 2kjq_A           79 ---------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQ  100 (149)
T ss_dssp             ---------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHH
T ss_pred             ---------------------------------------------------------HHHhCCCEEEEeCccc-cChHHH
Confidence                                                                     2356899999999998 666558


Q ss_pred             HHHHHHHHHhc-CCCe-EEEEecC
Q 048556          436 RVVQEALDKIM-INRT-TVIVAHR  457 (478)
Q Consensus       436 ~~i~~~l~~~~-~~~t-~i~itH~  457 (478)
                      +.+++.+.+.. .+++ +|++||+
T Consensus       101 ~~l~~li~~~~~~g~~~iiits~~  124 (149)
T 2kjq_A          101 ALLFSIFNRFRNSGKGFLLLGSEY  124 (149)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEESS
T ss_pred             HHHHHHHHHHHHcCCcEEEEECCC
Confidence            88888887765 3577 7888885

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=99.44  E-value=8.7e-14  Score=142.78  Aligned_cols=147  Identities=15%  Similarity=0.224  Sum_probs=95.6

Q ss_pred             eecCCCEEEEEcCCCCChHHHHHH--HhccCCCCcc-----EEEECCeecC-CCCHHHhhcceEEEecCCCCCcccHHHH
Q 048556          285 SIPSGTTAALVGQSGSGKSTVISL--IERFYDPQAG-----EVLIDGVNLK-EFQLKWIRGKIGLVSQEPVLFTSSIKDN  356 (478)
Q Consensus       285 ~i~~G~~~~ivG~sGsGKSTL~~l--l~g~~~~~~G-----~i~~~g~~~~-~~~~~~~r~~i~~v~Q~~~lf~~ti~eN  356 (478)
                      -|++|++++|+||||||||||++.  +.+..+++.|     .+++++.+.. ......+++++++.+|       ++.+|
T Consensus       174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen  246 (400)
T 3lda_A          174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN  246 (400)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred             CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence            589999999999999999999994  4566666444     8888887631 1222334455665444       67778


Q ss_pred             HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH--cCCCCEEEEeCCCCCCCHHH
Q 048556          357 INYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI--LKDPRILLLDEATSALDAES  434 (478)
Q Consensus       357 l~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal--l~~~~ililDEpts~LD~~~  434 (478)
                      +.+..+. +.++..+.                                   +.-++.+  -.+|+++++||||+.+|...
T Consensus       247 i~~~~~~-~~~~~~~~-----------------------------------l~~~~~~l~~~~~~llVIDs~t~~~~~~~  290 (400)
T 3lda_A          247 VAYARAY-NADHQLRL-----------------------------------LDAAAQMMSESRFSLIVVDSVMALYRTDF  290 (400)
T ss_dssp             EEEEECC-SHHHHHHH-----------------------------------HHHHHHHHHHSCEEEEEEETGGGGCC---
T ss_pred             EEEeccC-ChHHHHHH-----------------------------------HHHHHHHHHhcCCceEEecchhhhCchhh
Confidence            7776542 22222211                                   1111111  14799999999999999754


Q ss_pred             H------------HHHHHHHHHhc--CCCeEEEEecCc-------------------hhhhh-cCEEEEEeCCE
Q 048556          435 E------------RVVQEALDKIM--INRTTVIVAHRL-------------------STVRN-ADLIAVIHQGK  474 (478)
Q Consensus       435 ~------------~~i~~~l~~~~--~~~t~i~itH~~-------------------~~~~~-~d~i~vl~~G~  474 (478)
                      .            ..+++.|+++.  .+.|+|+|+|..                   ..+.+ +|.++.|+.|+
T Consensus       291 sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~  364 (400)
T 3lda_A          291 SGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK  364 (400)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred             cCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence            3            56777777664  378999999982                   12344 89999998763

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.40  E-value=1.2e-13  Score=125.87  Aligned_cols=111  Identities=15%  Similarity=0.197  Sum_probs=75.5

Q ss_pred             eeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCC
Q 048556          283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKD  362 (478)
Q Consensus       283 s~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~  362 (478)
                      +|++++|+.++|+||+|||||||++.+++.+.|.+|...                  .|+         +..        
T Consensus        32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~------------------~~~---------~~~--------   76 (180)
T 3ec2_A           32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG------------------YFF---------DTK--------   76 (180)
T ss_dssp             SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC------------------CEE---------EHH--------
T ss_pred             hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE------------------EEE---------EHH--------
Confidence            467889999999999999999999999999987666311                  111         111        


Q ss_pred             CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCC-CCCHHHHHHHHHH
Q 048556          363 GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS-ALDAESERVVQEA  441 (478)
Q Consensus       363 ~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts-~LD~~~~~~i~~~  441 (478)
                           ++.+...     .....   +        ...          -....+.+|++|+||||++ ++|+.....+.+.
T Consensus        77 -----~~~~~~~-----~~~~~---~--------~~~----------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~l  125 (180)
T 3ec2_A           77 -----DLIFRLK-----HLMDE---G--------KDT----------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYI  125 (180)
T ss_dssp             -----HHHHHHH-----HHHHH---T--------CCS----------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHH
T ss_pred             -----HHHHHHH-----HHhcC---c--------hHH----------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHH
Confidence                 1111110     00000   0        000          0112244999999999996 8999999999998


Q ss_pred             HHHhc-CCCeEEEEecCch
Q 048556          442 LDKIM-INRTTVIVAHRLS  459 (478)
Q Consensus       442 l~~~~-~~~t~i~itH~~~  459 (478)
                      +.... +++++|++||...
T Consensus       126 l~~~~~~~~~ii~tsn~~~  144 (180)
T 3ec2_A          126 ITYRYNNLKSTIITTNYSL  144 (180)
T ss_dssp             HHHHHHTTCEEEEECCCCS
T ss_pred             HHHHHHcCCCEEEEcCCCh
Confidence            87664 6789999999874

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.38  E-value=5.2e-16  Score=151.83  Aligned_cols=144  Identities=17%  Similarity=0.163  Sum_probs=105.0

Q ss_pred             cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCC-CCCcc-cHH
Q 048556          277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEP-VLFTS-SIK  354 (478)
Q Consensus       277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~-~lf~~-ti~  354 (478)
                      .+++++++++++|  ++|+||||||||||+++|+|...+  |.|.++|.++......+.++.+++++|.+ ..++. ++.
T Consensus        34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~  109 (274)
T 2x8a_A           34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF  109 (274)
T ss_dssp             HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence            5789999999999  999999999999999999999877  79999999887655555677889999975 34443 677


Q ss_pred             HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCC------
Q 048556          355 DNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS------  428 (478)
Q Consensus       355 eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts------  428 (478)
                      ||+....+.....+..                 .....+.+....|||||+||..+++|+.++|+++  |||+.      
T Consensus       110 Deid~~~~~r~~~~~~-----------------~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd  170 (274)
T 2x8a_A          110 DEVDALCPRRSDRETG-----------------ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLD  170 (274)
T ss_dssp             ETCTTTCC--------------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSC
T ss_pred             ehhhhhhcccCCCcch-----------------HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCC
Confidence            7876644321111100                 0011112223469999999999999999999974  99864      


Q ss_pred             ------CCCHHHHHHHHHHHH
Q 048556          429 ------ALDAESERVVQEALD  443 (478)
Q Consensus       429 ------~LD~~~~~~i~~~l~  443 (478)
                            --|...+..|++.+.
T Consensus       171 ~~i~~~~P~~~~r~~il~~~~  191 (274)
T 2x8a_A          171 KTLFVGLPPPADRLAILKTIT  191 (274)
T ss_dssp             EEEECCSCCHHHHHHHHHHHT
T ss_pred             eEEEeCCcCHHHHHHHHHHHH
Confidence                  347777777777654

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.35  E-value=5.8e-14  Score=139.17  Aligned_cols=117  Identities=15%  Similarity=0.065  Sum_probs=76.9

Q ss_pred             eeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE---CCeecCCCCHHHhhcceEEEecCCCCC-----cc-cHH
Q 048556          284 LSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI---DGVNLKEFQLKWIRGKIGLVSQEPVLF-----TS-SIK  354 (478)
Q Consensus       284 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~---~g~~~~~~~~~~~r~~i~~v~Q~~~lf-----~~-ti~  354 (478)
                      +++.+|++++++||||||||||+|+|+ +.+|+.|+|.+   +|.+++........+.++|++|+|.+.     .. |+ 
T Consensus       160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-  237 (302)
T 2yv5_A          160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-  237 (302)
T ss_dssp             HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred             HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence            456789999999999999999999999 99999999999   998886644221123699999999653     33 78 


Q ss_pred             HHH--hcC---------C---CC-CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048556          355 DNI--NYG---------K---DG-ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR  412 (478)
Q Consensus       355 eNl--~~~---------~---~~-~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lAR  412 (478)
                      ||+  .++         .   +. ...+.+.++++..++.+.          ........|||.+++++.|||
T Consensus       238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~----------~~~~~~~~ls~~~~R~~~~~~  300 (302)
T 2yv5_A          238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCE----------RYKSYLKIIKVYLEEIKELCR  300 (302)
T ss_dssp             GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHH----------HHHHHHHHTTCCCTTHHHHSS
T ss_pred             HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHH----------HHHHHHHHHHHHHHHHHHHhc
Confidence            888  443         0   10 112345555555544321          222234579998888999987

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.27  E-value=6.8e-13  Score=131.40  Aligned_cols=102  Identities=17%  Similarity=0.135  Sum_probs=68.4

Q ss_pred             eeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE---CCeecCCCCHHHhhcceEEEecCCC-------------
Q 048556          284 LSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI---DGVNLKEFQLKWIRGKIGLVSQEPV-------------  347 (478)
Q Consensus       284 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~---~g~~~~~~~~~~~r~~i~~v~Q~~~-------------  347 (478)
                      |++.+|++++|+||||||||||+|+|+|+..|+.|+|.+   +|.+++........+.++||+|+|.             
T Consensus       164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~  243 (301)
T 1u0l_A          164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE  243 (301)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred             HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence            567789999999999999999999999999999999999   9998876542211246899999985             


Q ss_pred             ---CCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcH-HHHHHhCC
Q 048556          348 ---LFTS-SIKDNINYGKD---GASIAEIMAAAELANA-AKFIDSLP  386 (478)
Q Consensus       348 ---lf~~-ti~eNl~~~~~---~~~~~~~~~a~~~~~~-~~~i~~lp  386 (478)
                         +|+. |+ +|+.++.-   ....+++.++++..++ .+.....|
T Consensus       244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~  289 (301)
T 1u0l_A          244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV  289 (301)
T ss_dssp             HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred             HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence               4655 78 99987531   1223567788888877 35555444

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.24  E-value=1.5e-13  Score=136.48  Aligned_cols=91  Identities=18%  Similarity=0.266  Sum_probs=75.4

Q ss_pred             ccEEEEeEEEECCCCCCCcccccceeee-------------------cCCCEEEEEcCCCCChHHHHHHHhccCC--CCc
Q 048556          259 GDIELKDIYFSYPSRPGEQIFNGFSLSI-------------------PSGTTAALVGQSGSGKSTVISLIERFYD--PQA  317 (478)
Q Consensus       259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i-------------------~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~  317 (478)
                      +.|+++||++.|.     ++++++++.+                   ++|+++||+||||||||||+++|+|++.  |++
T Consensus        36 ~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~  110 (308)
T 1sq5_A           36 EDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEH  110 (308)
T ss_dssp             TTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTC
T ss_pred             cccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCC
Confidence            4589999999993     6999999998                   9999999999999999999999999998  999


Q ss_pred             cEEEE---CCeecCCCCHHHhhcceEEEecCCCCCcc-cHHHHHhc
Q 048556          318 GEVLI---DGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINY  359 (478)
Q Consensus       318 G~i~~---~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNl~~  359 (478)
                      |+|.+   ||....   . ..++.++++ |+..++.. |+.+|+.+
T Consensus       111 G~i~vi~~d~~~~~---~-~~~~~~~~v-q~~~~~~~~~~~~~~~~  151 (308)
T 1sq5_A          111 RRVELITTDGFLHP---N-QVLKERGLM-KKKGFPESYDMHRLVKF  151 (308)
T ss_dssp             CCEEEEEGGGGBCC---H-HHHHHHTCT-TCTTSGGGBCHHHHHHH
T ss_pred             CeEEEEecCCccCc---H-HHHHhCCEe-ecCCCCCCccHHHHHHH
Confidence            99999   887642   2 345668888 76665543 77777654

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=99.24  E-value=4.4e-14  Score=134.19  Aligned_cols=38  Identities=26%  Similarity=0.227  Sum_probs=22.9

Q ss_pred             cccccceeeecCCCEEEEEcCCCCChHHHHHHHh-ccCC
Q 048556          277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIE-RFYD  314 (478)
Q Consensus       277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~-g~~~  314 (478)
                      ...+++||++++|++++|+||||||||||+++|+ |+++
T Consensus        15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~   53 (231)
T 3lnc_A           15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN   53 (231)
T ss_dssp             -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred             cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            4578999999999999999999999999999999 9983

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.22  E-value=1.1e-11  Score=114.75  Aligned_cols=72  Identities=11%  Similarity=0.100  Sum_probs=56.3

Q ss_pred             eeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc-cHHHHHh
Q 048556          283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNIN  358 (478)
Q Consensus       283 s~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNl~  358 (478)
                      |+++++|++++|+||||||||||+++|+|+++    .+.+++.++...+....+..++|++|++..|.. +..+|+.
T Consensus         1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (205)
T 3tr0_A            1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL   73 (205)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred             CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence            57788999999999999999999999999974    588888887766544457789999999988865 5555554

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.19  E-value=2.7e-12  Score=132.28  Aligned_cols=153  Identities=20%  Similarity=0.204  Sum_probs=90.8

Q ss_pred             cccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHh
Q 048556          279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNIN  358 (478)
Q Consensus       279 l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~  358 (478)
                      -++++|+++.|+.++|+|+||||||||++.|++..+      .+.+.+...+     ...+++|+++.. ..-++.|+..
T Consensus       147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~~-~~~~l~DtpG  214 (416)
T 1udx_A          147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSEE-ERFTLADIPG  214 (416)
T ss_dssp             EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSSS-CEEEEEECCC
T ss_pred             EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecCc-ceEEEEeccc
Confidence            478999999999999999999999999999999843      3444443332     345666666541 1112222221


Q ss_pred             cCCC-----CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 048556          359 YGKD-----GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE  433 (478)
Q Consensus       359 ~~~~-----~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~  433 (478)
                      +...     .... +..+..  ..++..+..    +|-. .+...+||+||+|+.++||+|..+|.++++    +.+|..
T Consensus       215 li~~a~~~~~L~~-~fl~~~--era~~lL~v----vDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~  282 (416)
T 1udx_A          215 IIEGASEGKGLGL-EFLRHI--ARTRVLLYV----LDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL  282 (416)
T ss_dssp             CCCCGGGSCCSCH-HHHHHH--TSSSEEEEE----EETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred             cccchhhhhhhhH-HHHHHH--HHHHhhhEE----eCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence            1100     0111 111100  000001100    0100 223457999999999999999999999999    899988


Q ss_pred             HHHHHHHHHHHh-c-CCCeEEEEec
Q 048556          434 SERVVQEALDKI-M-INRTTVIVAH  456 (478)
Q Consensus       434 ~~~~i~~~l~~~-~-~~~t~i~itH  456 (478)
                      .+ ...+.+.+. . .+.+++.+|.
T Consensus       283 ~~-~~~~~l~~~l~~~g~~vi~iSA  306 (416)
T 1udx_A          283 EE-EAVKALADALAREGLAVLPVSA  306 (416)
T ss_dssp             CH-HHHHHHHHHHHTTTSCEEECCT
T ss_pred             hH-HHHHHHHHHHHhcCCeEEEEEC
Confidence            66 344444333 2 3457776653

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=99.18  E-value=5.9e-11  Score=117.05  Aligned_cols=142  Identities=15%  Similarity=0.139  Sum_probs=100.1

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      +.++++++.|+..   +  ++++|+  +|++++++|++|+||||++..|++++.+..|+|.+.+.|...-...       
T Consensus        77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~-------  142 (295)
T 1ls1_A           77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR-------  142 (295)
T ss_dssp             HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH-------
T ss_pred             HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH-------
Confidence            5667788888531   2  688888  8999999999999999999999999999899999987775431100       


Q ss_pred             EEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCE
Q 048556          341 LVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI  420 (478)
Q Consensus       341 ~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~i  420 (478)
                                    +.+            ....+.       .    |++-.-.  +......+.+|.+++++...++++
T Consensus       143 --------------~ql------------~~~~~~-------~----~l~~~~~--~~~~~p~~l~~~~l~~~~~~~~D~  183 (295)
T 1ls1_A          143 --------------EQL------------RLLGEK-------V----GVPVLEV--MDGESPESIRRRVEEKARLEARDL  183 (295)
T ss_dssp             --------------HHH------------HHHHHH-------H----TCCEEEC--CTTCCHHHHHHHHHHHHHHHTCCE
T ss_pred             --------------HHH------------HHhccc-------C----CeEEEEc--CCCCCHHHHHHHHHHHHHhCCCCE
Confidence                          000            000010       0    2221111  112334566789999998889999


Q ss_pred             EEEeCC-CCCCCHHHHHHHHHHHHHhcCCCeEEEEe
Q 048556          421 LLLDEA-TSALDAESERVVQEALDKIMINRTTVIVA  455 (478)
Q Consensus       421 lilDEp-ts~LD~~~~~~i~~~l~~~~~~~t~i~it  455 (478)
                      +|+||| ++++|...-..+.+..+....+.+++++.
T Consensus       184 viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~  219 (295)
T 1ls1_A          184 ILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD  219 (295)
T ss_dssp             EEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred             EEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence            999999 99999988888888777666666665554

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=99.18  E-value=3.9e-11  Score=118.41  Aligned_cols=137  Identities=12%  Similarity=0.187  Sum_probs=87.9

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCH
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASI  366 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~  366 (478)
                      ++|++++++||+||||||++..|++.+.+++|                  +++.++.+|++  ..+..|++..       
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL~~-------  155 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQLKT-------  155 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHHHH-------
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHHHH-------
Confidence            57999999999999999999999999998777                  24667777763  2233333321       


Q ss_pred             HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc
Q 048556          367 AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM  446 (478)
Q Consensus       367 ~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~  446 (478)
                           ..+         ..  |+.-...     .+ ++..+.+++++  ++|+++|+|  |+++|+..+..+.+..+-..
T Consensus       156 -----~~~---------~~--gl~~~~~-----~~-~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~  209 (296)
T 2px0_A          156 -----YAE---------LL--QAPLEVC-----YT-KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIP  209 (296)
T ss_dssp             -----HHT---------TT--TCCCCBC-----SS-HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSC
T ss_pred             -----HHH---------hc--CCCeEec-----CC-HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHh
Confidence                 111         00  2211111     12 34456777764  899999999  99999877665555443322


Q ss_pred             ---CCCeEEEE--ecCchhhhh-cCEEEEEeCCEEe
Q 048556          447 ---INRTTVIV--AHRLSTVRN-ADLIAVIHQGKLV  476 (478)
Q Consensus       447 ---~~~t~i~i--tH~~~~~~~-~d~i~vl~~G~i~  476 (478)
                         .+.+++++  +|..+.+.. ++++..++.|.++
T Consensus       210 ~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giV  245 (296)
T 2px0_A          210 FESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYI  245 (296)
T ss_dssp             CCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEE
T ss_pred             hcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEE
Confidence               23345555  898777665 6766555555554

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=99.17  E-value=4.6e-11  Score=118.29  Aligned_cols=99  Identities=14%  Similarity=0.323  Sum_probs=73.2

Q ss_pred             cceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcC
Q 048556          281 GFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG  360 (478)
Q Consensus       281 ~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~  360 (478)
                      +++++.++|++++|+||+||||||+++.|++.+.+..|+|.+.+.|....                     ...++    
T Consensus        96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~---------------------~a~eq----  150 (306)
T 1vma_A           96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA---------------------AAIEQ----  150 (306)
T ss_dssp             CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH---------------------HHHHH----
T ss_pred             CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH---------------------HHHHH----
Confidence            35666789999999999999999999999999999888998877664210                     01111    


Q ss_pred             CCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHH---HHHHHHcCCCCEEEEeCCCC
Q 048556          361 KDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRI---AIARAILKDPRILLLDEATS  428 (478)
Q Consensus       361 ~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl---~lARall~~~~ililDEpts  428 (478)
                              +         ..+.+..  |++..     ...|||+.|++   ++++|+.++|+++|+|||..
T Consensus       151 --------L---------~~~~~~~--gl~~~-----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~  197 (306)
T 1vma_A          151 --------L---------KIWGERV--GATVI-----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR  197 (306)
T ss_dssp             --------H---------HHHHHHH--TCEEE-----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred             --------H---------HHHHHHc--CCcEE-----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence                    1         1122211  33221     24589999999   99999999999999999985

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=99.16  E-value=4.4e-13  Score=126.38  Aligned_cols=129  Identities=16%  Similarity=0.176  Sum_probs=96.5

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccC---CCCccEEEE--------CCeecCC-CCHHHhhcceEEEecCC------CCC
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFY---DPQAGEVLI--------DGVNLKE-FQLKWIRGKIGLVSQEP------VLF  349 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~---~~~~G~i~~--------~g~~~~~-~~~~~~r~~i~~v~Q~~------~lf  349 (478)
                      .+.+++|+||+||||||++++|++.+   .++.|++..        +|.++.+ ....++++++++++|++      .++
T Consensus         4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   83 (227)
T 1cke_A            4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE   83 (227)
T ss_dssp             CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence            35789999999999999999999877   778899887        6777653 45567888999999875      345


Q ss_pred             cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccc-cCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCC
Q 048556          350 TSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMV-GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS  428 (478)
Q Consensus       350 ~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~-~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts  428 (478)
                      ..++.+++.       .+++..++..+..++.+...+.+..+.+ .++|.-++|+     .++++++++++++|+.+++.
T Consensus        84 ~~~v~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~~  151 (227)
T 1cke_A           84 GEDVSGEIR-------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDASS  151 (227)
T ss_dssp             TEECHHHHT-------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECCH
T ss_pred             CeeCchhhC-------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCCH
Confidence            557778763       4677777777777777766555554444 3456677776     45667888999999888753

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=99.15  E-value=1.1e-11  Score=129.59  Aligned_cols=54  Identities=17%  Similarity=0.141  Sum_probs=50.8

Q ss_pred             cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC
Q 048556          277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ  331 (478)
Q Consensus       277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~  331 (478)
                      ++|+|+||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus        18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~   71 (483)
T 3euj_A           18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGST   71 (483)
T ss_dssp             TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCC
T ss_pred             ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCc
Confidence            489999999999 999999999999999999999999999999999999886544

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.11  E-value=5.8e-14  Score=141.11  Aligned_cols=162  Identities=16%  Similarity=0.208  Sum_probs=100.0

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCC-------CEEEEEcCCCCChHHHHHHHhccC----CCCccEEEECCeecCC
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSG-------TTAALVGQSGSGKSTVISLIERFY----DPQAGEVLIDGVNLKE  329 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G-------~~~~ivG~sGsGKSTL~~ll~g~~----~~~~G~i~~~g~~~~~  329 (478)
                      ++.++++..|.+   ..+++++++.+++|       +.++|+||+|+|||||++++++..    .+.+|.+..++.++..
T Consensus        19 lr~~~l~~~~g~---~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~   95 (334)
T 1in4_A           19 LRPKSLDEFIGQ---ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAA   95 (334)
T ss_dssp             TSCSSGGGCCSC---HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHH
T ss_pred             cCCccHHHccCc---HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHH
Confidence            344455555642   36899999999877       899999999999999999999998    6777877766655433


Q ss_pred             CCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHH-HHHHHhcHHHHHHhCC-CCccccccCCCCCCChHHHHH
Q 048556          330 FQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIM-AAAELANAAKFIDSLP-QGLDTMVGEHGTQLSGGQKQR  407 (478)
Q Consensus       330 ~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~-~a~~~~~~~~~i~~lp-~g~~t~~~~~g~~LSgGq~Qr  407 (478)
                      ......+..|.+++|...++. ++.|++.........+-+. .......+..   .+| -++.. .......||+|++||
T Consensus        96 ~~~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~---~l~~~~li~-at~~~~~Ls~~l~sR  170 (334)
T 1in4_A           96 ILTSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPSAKSIRI---DIQPFTLVG-ATTRSGLLSSPLRSR  170 (334)
T ss_dssp             HHHHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC------------------CCCEEEE-EESCGGGSCHHHHTT
T ss_pred             HHHHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCcccccccc---cCCCeEEEE-ecCCcccCCHHHHHh
Confidence            211112457999999887765 7888774211000000000 0000000111   111 12221 234456899999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc
Q 048556          408 IAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM  446 (478)
Q Consensus       408 l~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~  446 (478)
                      ++++                .+||+.+.+.+.+.|++..
T Consensus       171 ~~l~----------------~~Ld~~~~~~l~~iL~~~~  193 (334)
T 1in4_A          171 FGII----------------LELDFYTVKELKEIIKRAA  193 (334)
T ss_dssp             CSEE----------------EECCCCCHHHHHHHHHHHH
T ss_pred             cCce----------------eeCCCCCHHHHHHHHHHHH
Confidence            8655                6677777777877776653

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=99.10  E-value=5.3e-12  Score=121.69  Aligned_cols=72  Identities=17%  Similarity=0.246  Sum_probs=62.2

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHh---ccCCCCccEEE--------ECCeecC-CCCHHHhhcceEEEecC------CCC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIE---RFYDPQAGEVL--------IDGVNLK-EFQLKWIRGKIGLVSQE------PVL  348 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~---g~~~~~~G~i~--------~~g~~~~-~~~~~~~r~~i~~v~Q~------~~l  348 (478)
                      ++|++++|+|||||||||++++|+   |++.|++|.+.        .+|.++. .....++++.+++++|.      .++
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  104 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL  104 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence            889999999999999999999999   99999999999        9999884 45677889999999964      345


Q ss_pred             CcccHHHHHh
Q 048556          349 FTSSIKDNIN  358 (478)
Q Consensus       349 f~~ti~eNl~  358 (478)
                      +..++.+|+.
T Consensus       105 ~~~~v~~~i~  114 (252)
T 4e22_A          105 EGEDVSNEIR  114 (252)
T ss_dssp             TTEECTTGGG
T ss_pred             CCeehhHHHH
Confidence            5667887764

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=99.07  E-value=1.3e-13  Score=134.83  Aligned_cols=152  Identities=20%  Similarity=0.248  Sum_probs=102.9

Q ss_pred             EEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEE
Q 048556          262 ELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGL  341 (478)
Q Consensus       262 ~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~  341 (478)
                      +++++.+.|.+   ..+++++++++++|  ++|+||||||||||++.|++...  .|.|.+++.++.+......++.+.+
T Consensus        51 ~l~~l~~~~~~---~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~  123 (278)
T 1iy2_A           51 ELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD  123 (278)
T ss_dssp             HHHHHHHHHHC---HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred             HHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence            45566666642   36899999999999  99999999999999999999985  7999999887654443444566778


Q ss_pred             EecCCC-CCcc-cHHHHHh-cCCCCCC-----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556          342 VSQEPV-LFTS-SIKDNIN-YGKDGAS-----IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA  413 (478)
Q Consensus       342 v~Q~~~-lf~~-ti~eNl~-~~~~~~~-----~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa  413 (478)
                      ++|+.. .++. ++.||+. ++.....     .++..+.     +.+.+               ..|||||+||..+++|
T Consensus       124 ~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~-----~~~ll---------------~~lsgg~~~~~~i~~a  183 (278)
T 1iy2_A          124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT-----LNQLL---------------VEMDGFEKDTAIVVMA  183 (278)
T ss_dssp             HHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHH-----HHHHH---------------HHHTTCCTTCCEEEEE
T ss_pred             HHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHH-----HHHHH---------------HHHhCCCCCCCEEEEE
Confidence            888764 3433 6677773 3321110     1111111     11122               2478999999999999


Q ss_pred             HcCCCCEEEEeCCCC------------CCCHHHHHHHHHHH
Q 048556          414 ILKDPRILLLDEATS------------ALDAESERVVQEAL  442 (478)
Q Consensus       414 ll~~~~ililDEpts------------~LD~~~~~~i~~~l  442 (478)
                      +..+|++  +|++..            -.|.+.+..+++..
T Consensus       184 ~t~~p~~--ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~  222 (278)
T 1iy2_A          184 ATNRPDI--LDPALLRPGRFDRQIAIDAPDVKGREQILRIH  222 (278)
T ss_dssp             EESCTTS--SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHH
T ss_pred             ecCCchh--CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHH
Confidence            9999986  676642            23555666666543

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=99.07  E-value=7.2e-12  Score=123.92  Aligned_cols=73  Identities=22%  Similarity=0.302  Sum_probs=45.3

Q ss_pred             eeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE---CCeecCCCCHHHhhcceEEEecCCCCCc-----ccHHH
Q 048556          284 LSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI---DGVNLKEFQLKWIRGKIGLVSQEPVLFT-----SSIKD  355 (478)
Q Consensus       284 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~---~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-----~ti~e  355 (478)
                      +++.+|++++|+||||+|||||+|.|+|...|..|+|.+   +|.+++... +.++..++|++|.|.++.     -|+ |
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e  245 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E  245 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence            667899999999999999999999999999999999999   888776532 112223899999998764     377 8


Q ss_pred             HHh
Q 048556          356 NIN  358 (478)
Q Consensus       356 Nl~  358 (478)
                      |+.
T Consensus       246 ~l~  248 (307)
T 1t9h_A          246 ELG  248 (307)
T ss_dssp             HHG
T ss_pred             HHH
Confidence            984

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=99.05  E-value=6.5e-11  Score=112.45  Aligned_cols=167  Identities=13%  Similarity=0.140  Sum_probs=88.3

Q ss_pred             cccccc-eeeecCCCEEEEEcCCCCChHHHHH-HHhccCCCCccEEEECCeecCCCCHHHhh---cceEEEecCCCCCcc
Q 048556          277 QIFNGF-SLSIPSGTTAALVGQSGSGKSTVIS-LIERFYDPQAGEVLIDGVNLKEFQLKWIR---GKIGLVSQEPVLFTS  351 (478)
Q Consensus       277 ~~l~~i-s~~i~~G~~~~ivG~sGsGKSTL~~-ll~g~~~~~~G~i~~~g~~~~~~~~~~~r---~~i~~v~Q~~~lf~~  351 (478)
                      +.|+++ .--+++|+.++|+||+|||||||+. ++.+..++..+.+++++..    +.++++   +.+++.+|+...   
T Consensus        10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~---   82 (247)
T 2dr3_A           10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEE---   82 (247)
T ss_dssp             TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHH---
T ss_pred             hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhh---
Confidence            456666 5679999999999999999999955 4455554444445554432    222222   233444332100   


Q ss_pred             cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc--CCCCEEEEeCCCCC
Q 048556          352 SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL--KDPRILLLDEATSA  429 (478)
Q Consensus       352 ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall--~~~~ililDEpts~  429 (478)
                        .+|+.+...  ..+.             +...+. .+....+.    +....+....++.++  .+|+++++|++++-
T Consensus        83 --~~~l~~~~~--~~~~-------------~~~~~~-~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l  140 (247)
T 2dr3_A           83 --KGMFAMVDA--FTAG-------------IGKSKE-YEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTL  140 (247)
T ss_dssp             --HTSEEEEEC--STTT-------------TCC--C-CCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGG
T ss_pred             --CCcEEEEec--chhh-------------cccccc-cccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHh
Confidence              001111100  0000             000000 00001011    112233334444444  47999999999998


Q ss_pred             C--CHHHHHHHHHHHHHhc--CCCeEEEEecCchh---------hhhcCEEEEEeC
Q 048556          430 L--DAESERVVQEALDKIM--INRTTVIVAHRLST---------VRNADLIAVIHQ  472 (478)
Q Consensus       430 L--D~~~~~~i~~~l~~~~--~~~t~i~itH~~~~---------~~~~d~i~vl~~  472 (478)
                      +  |+.....++..+.+..  .++|+++++|....         ...||.++.|+.
T Consensus       141 ~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~  196 (247)
T 2dr3_A          141 YINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL  196 (247)
T ss_dssp             TTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred             hcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence            8  5544455555555442  47899999998764         244899999854

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.04  E-value=5.2e-14  Score=143.83  Aligned_cols=160  Identities=16%  Similarity=0.158  Sum_probs=105.4

Q ss_pred             eecCCCEEEEEcCCCCChHHHHHHHhc------------cCCCCccEEEECCeecCCCCH-HHhhcc---eEEEecCCCC
Q 048556          285 SIPSGTTAALVGQSGSGKSTVISLIER------------FYDPQAGEVLIDGVNLKEFQL-KWIRGK---IGLVSQEPVL  348 (478)
Q Consensus       285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g------------~~~~~~G~i~~~g~~~~~~~~-~~~r~~---i~~v~Q~~~l  348 (478)
                      .+++|.+++|+|++|+|||||++.|.|            ..+|+.|.+.++|..+..+.. -.-++.   ..++.+.|.+
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl   95 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL   95 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence            568899999999999999999999999            668999999998854321110 000112   2467777776


Q ss_pred             Ccc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccc----cCCCCCCChHHHHHHHHHHHHcCCC--CEE
Q 048556          349 FTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMV----GEHGTQLSGGQKQRIAIARAILKDP--RIL  421 (478)
Q Consensus       349 f~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~----~~~g~~LSgGq~Qrl~lARall~~~--~il  421 (478)
                      ..+ |..|++.        ++.....+         .. +.+-..+    ......+||+.            +|  ++.
T Consensus        96 ~~~~s~~e~L~--------~~fl~~ir---------~~-d~il~Vvd~~~d~~i~~v~~~~------------dP~~di~  145 (392)
T 1ni3_A           96 TKGASTGVGLG--------NAFLSHVR---------AV-DAIYQVVRAFDDAEIIHVEGDV------------DPIRDLS  145 (392)
T ss_dssp             CCCCCSSSSSC--------HHHHHHHT---------TC-SEEEEEEECCCTTCSSCCSSSS------------CHHHHHH
T ss_pred             ccCCcHHHHHH--------HHHHHHHH---------HH-HHHHHHHhccccceeeeecccc------------Ccchhhh
Confidence            653 3322220        11111111         10 1111111    12233355552            89  999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHh-cC-CCeEEEEecCchhhhh-cCEEE-EEeCC-EEe
Q 048556          422 LLDEATSALDAESERVVQEALDKI-MI-NRTTVIVAHRLSTVRN-ADLIA-VIHQG-KLV  476 (478)
Q Consensus       422 ilDEpts~LD~~~~~~i~~~l~~~-~~-~~t~i~itH~~~~~~~-~d~i~-vl~~G-~i~  476 (478)
                      ++|||++.+|+...++.++.+... .. +.|+  ++|.+..+.. ||++. +|++| +++
T Consensus       146 ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~  203 (392)
T 1ni3_A          146 IIVDELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPI  203 (392)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCG
T ss_pred             hchhhhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCcee
Confidence            999999999999999999999886 54 4554  3999988766 89998 88999 654

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=99.04  E-value=1.2e-11  Score=134.03  Aligned_cols=157  Identities=15%  Similarity=0.186  Sum_probs=104.4

Q ss_pred             CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCc-cEEEECCeecCCCCHHHhhcceEEEecCC--------
Q 048556          276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA-GEVLIDGVNLKEFQLKWIRGKIGLVSQEP--------  346 (478)
Q Consensus       276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~-G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~--------  346 (478)
                      ..+++++++.+++|+.++|+||||||||||++.|+++.++.. |.+.+++.+....     ...++++|+..        
T Consensus        47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~  121 (604)
T 3k1j_A           47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKY  121 (604)
T ss_dssp             HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHH
T ss_pred             hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHH
Confidence            468999999999999999999999999999999999999887 7888888766543     45688888754        


Q ss_pred             --------------CCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 048556          347 --------------VLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIA  411 (478)
Q Consensus       347 --------------~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lA  411 (478)
                                    +.|.. ++.+|+..++.......+... ......+.+...    +. -......+|+|+.|++..+
T Consensus       122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~~----~~-~~~~~g~~~~g~~~~i~~g  195 (604)
T 3k1j_A          122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGDV----RH-DPFQSGGLGTPAHERVEPG  195 (604)
T ss_dssp             HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCEE----CC-CCC----CCCCGGGGEECC
T ss_pred             HHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCceE----Ee-chhhcCCccccccccccCc
Confidence                          22221 344444432211000000000 001111222111    11 1122245999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048556          412 RAILKDPRILLLDEATSALDAESERVVQEALDK  444 (478)
Q Consensus       412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~  444 (478)
                      +....++.+|+|||... |++.....+.+.|.+
T Consensus       196 ~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~  227 (604)
T 3k1j_A          196 MIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE  227 (604)
T ss_dssp             HHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred             eeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence            99999999999999998 899999999998874

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=99.02  E-value=2.2e-13  Score=131.06  Aligned_cols=153  Identities=19%  Similarity=0.225  Sum_probs=103.4

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      .+++++++.|.+   ..+++++++++++|  ++|+||||||||||++.+++...  .|.+.++|.++........++.+.
T Consensus        26 ~~l~~l~~~~~~---~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~   98 (254)
T 1ixz_A           26 EELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR   98 (254)
T ss_dssp             HHHHHHHHHHHC---HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred             HHHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence            456677776742   36899999999999  99999999999999999999885  789999988765443334455677


Q ss_pred             EEecCCC-CCcc-cHHHHH-hcCCCCC-----CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048556          341 LVSQEPV-LFTS-SIKDNI-NYGKDGA-----SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR  412 (478)
Q Consensus       341 ~v~Q~~~-lf~~-ti~eNl-~~~~~~~-----~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lAR  412 (478)
                      +++|... .++. ++.||+ .++....     ..++..+.     +.+.+               ..|||||+||..+++
T Consensus        99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~-----~~~ll---------------~~l~g~~~~~~~i~~  158 (254)
T 1ixz_A           99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT-----LNQLL---------------VEMDGFEKDTAIVVM  158 (254)
T ss_dssp             HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHH-----HHHHH---------------HHHHTCCTTCCEEEE
T ss_pred             HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHH-----HHHHH---------------HHHhCCCCCCCEEEE
Confidence            7888753 3333 566666 3332110     01111111     11122               247799999999999


Q ss_pred             HHcCCCCEEEEeCCCCC------------CCHHHHHHHHHHH
Q 048556          413 AILKDPRILLLDEATSA------------LDAESERVVQEAL  442 (478)
Q Consensus       413 all~~~~ililDEpts~------------LD~~~~~~i~~~l  442 (478)
                      |+..+|++  +|++...            -|.+.+..+++..
T Consensus       159 a~t~~p~~--ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~  198 (254)
T 1ixz_A          159 AATNRPDI--LDPALLRPGRFDRQIAIDAPDVKGREQILRIH  198 (254)
T ss_dssp             EEESCGGG--SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred             EccCCchh--CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHH
Confidence            99999986  7877642            3566666666544

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.01  E-value=5.4e-11  Score=109.19  Aligned_cols=141  Identities=19%  Similarity=0.184  Sum_probs=77.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCCC-----------CccEEEECCeecCC--CCHHHhhcceEEEecCCCCCcc--cHHH
Q 048556          291 TAALVGQSGSGKSTVISLIERFYDP-----------QAGEVLIDGVNLKE--FQLKWIRGKIGLVSQEPVLFTS--SIKD  355 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~~-----------~~G~i~~~g~~~~~--~~~~~~r~~i~~v~Q~~~lf~~--ti~e  355 (478)
                      +++|+|++|||||||++.++|...+           +.|+|.++|.++.-  ++....++..++++|...-..+  ++.|
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d  110 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD  110 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence            7899999999999999999998765           57999999976531  2211112223333331100000  1111


Q ss_pred             HHhcCCCCCCHHHHHHHHHHhcHHHHHHh-CCCCcc-ccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 048556          356 NINYGKDGASIAEIMAAAELANAAKFIDS-LPQGLD-TMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE  433 (478)
Q Consensus       356 Nl~~~~~~~~~~~~~~a~~~~~~~~~i~~-lp~g~~-t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~  433 (478)
                      +       ...........   ..+.+.. .+...- -.++.. ..|..-..+....||+++.+|+++++|  ||++|..
T Consensus       111 ~-------~~~~s~~~~~~---~~~~~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~  177 (191)
T 1oix_A          111 I-------AKHLTYENVER---WLKELRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDST  177 (191)
T ss_dssp             T-------TCHHHHHTHHH---HHHHHHHHSCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCT
T ss_pred             C-------cCHHHHHHHHH---HHHHHHHhcCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCC
Confidence            1       11111110000   0001111 111110 111211 112222223478899999999999999  9999999


Q ss_pred             HHHHHHHHHHH
Q 048556          434 SERVVQEALDK  444 (478)
Q Consensus       434 ~~~~i~~~l~~  444 (478)
                      +...+++.|.+
T Consensus       178 ~v~~l~~~l~~  188 (191)
T 1oix_A          178 NVEAAFQTILT  188 (191)
T ss_dssp             THHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            99999998865

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.95  E-value=1.8e-11  Score=115.96  Aligned_cols=75  Identities=12%  Similarity=0.148  Sum_probs=52.2

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC--------
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ--------  331 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~--------  331 (478)
                      .++++|++..|.     .     ++++++ ++++|+||||||||||+++|+|++.|++|+|.++|.++...+        
T Consensus         9 ~l~l~~~~~~~~-----~-----~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~   77 (227)
T 1qhl_A            9 SLTLINWNGFFA-----R-----TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL   77 (227)
T ss_dssp             EEEEEEETTEEE-----E-----EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred             EEEEEeeecccC-----C-----EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence            488888865542     1     466666 899999999999999999999999999999999999884332        


Q ss_pred             HHHhhcceEEEecC
Q 048556          332 LKWIRGKIGLVSQE  345 (478)
Q Consensus       332 ~~~~r~~i~~v~Q~  345 (478)
                      ....+..++|++|+
T Consensus        78 ~~~~~~~i~~v~~~   91 (227)
T 1qhl_A           78 HGKLKAGVCYSMLD   91 (227)
T ss_dssp             GGGBCSSEEEEEEE
T ss_pred             hhHhhcCcEEEEEe
Confidence            22346789999985

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=98.94  E-value=2.2e-09  Score=108.24  Aligned_cols=36  Identities=25%  Similarity=0.339  Sum_probs=28.9

Q ss_pred             eecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEE
Q 048556          285 SIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV  320 (478)
Q Consensus       285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i  320 (478)
                      -+++|+++.|.||+|||||||+..++.......|.+
T Consensus        57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~v   92 (349)
T 2zr9_A           57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIA   92 (349)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeE
Confidence            578999999999999999999888876554444443

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=98.93  E-value=7.8e-10  Score=115.56  Aligned_cols=176  Identities=8%  Similarity=0.125  Sum_probs=109.9

Q ss_pred             cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCcc-EEEECCeecCCCCHHHhhcce-EEEecCCCCCcccHH
Q 048556          277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG-EVLIDGVNLKEFQLKWIRGKI-GLVSQEPVLFTSSIK  354 (478)
Q Consensus       277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G-~i~~~g~~~~~~~~~~~r~~i-~~v~Q~~~lf~~ti~  354 (478)
                      +.|+++..-+++|+.+.|.|++|+|||||+..+++...+..| .+.+.+.+   .+..++.+++ +....-+       .
T Consensus       191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r~~~~~~~~~-------~  260 (454)
T 2r6a_A          191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMRMLCAEGNIN-------A  260 (454)
T ss_dssp             HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHHHHHHHHTCC-------H
T ss_pred             HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHHHHcCCC-------H
Confidence            568888878999999999999999999999999998776545 56654433   3444443332 1111000       1


Q ss_pred             HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc--CCCCEEEEeCCCCCCCH
Q 048556          355 DNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL--KDPRILLLDEATSALDA  432 (478)
Q Consensus       355 eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall--~~~~ililDEpts~LD~  432 (478)
                      +.+.-|  ..++++..+..+.   .+.+...|    -.+.+ ...+|.+|.+  +.||++.  .+|+++++|+++.-.+.
T Consensus       261 ~~l~~g--~l~~~~~~~~~~a---~~~l~~~~----l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~  328 (454)
T 2r6a_A          261 QNLRTG--KLTPEDWGKLTMA---MGSLSNAG----IYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGS  328 (454)
T ss_dssp             HHHHTS--CCCHHHHHHHHHH---HHHHHSSC----EEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCS
T ss_pred             HHHhcC--CCCHHHHHHHHHH---HHHHhcCC----EEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccC
Confidence            223223  2344443332222   22333322    12222 3478999876  6777776  57999999999987743


Q ss_pred             --------HHHHHHHHHHHHhc--CCCeEEEEec---------C--ch--------hhh-hcCEEEEEeCCE
Q 048556          433 --------ESERVVQEALDKIM--INRTTVIVAH---------R--LS--------TVR-NADLIAVIHQGK  474 (478)
Q Consensus       433 --------~~~~~i~~~l~~~~--~~~t~i~itH---------~--~~--------~~~-~~d~i~vl~~G~  474 (478)
                              .....+.+.|+.+.  .+.++|+++|         +  +.        .++ .||.|+.|..++
T Consensus       329 ~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~  400 (454)
T 2r6a_A          329 GRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDD  400 (454)
T ss_dssp             CC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETT
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccc
Confidence                    22356666676654  3789999999         1  32        344 499999997653

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=98.90  E-value=5.4e-11  Score=125.16  Aligned_cols=158  Identities=19%  Similarity=0.280  Sum_probs=93.3

Q ss_pred             cceeeecCCCEEEEEcCCCCChHHHHHHHhc--cCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCc---cc---
Q 048556          281 GFSLSIPSGTTAALVGQSGSGKSTVISLIER--FYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFT---SS---  352 (478)
Q Consensus       281 ~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g--~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~---~t---  352 (478)
                      .+++++.+|..+.|.|+|||||||+++.|..  ++.++.|++.+.+.|.+......+..       -|+++.   ..   
T Consensus       159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~~Vvtd~~~  231 (512)
T 2ius_A          159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLTEVVTDMKD  231 (512)
T ss_dssp             EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSSSCBCSHHH
T ss_pred             EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccceeecCHHH
Confidence            4788899999999999999999999999876  67777788888777766543333221       122221   00   


Q ss_pred             HHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCC---CCCCChHHHHHH----------HHHHHHcCCCC
Q 048556          353 IKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEH---GTQLSGGQKQRI----------AIARAILKDPR  419 (478)
Q Consensus       353 i~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~---g~~LSgGq~Qrl----------~lARall~~~~  419 (478)
                      +.+.+..     ..+|+.+.      .+.+...  |....-+.+   ...+|+||+|+.          ++|+++...|.
T Consensus       232 a~~~L~~-----~~~EmerR------~~ll~~~--Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~  298 (512)
T 2ius_A          232 AANALRW-----CVNEMERR------YKLMSAL--GVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPY  298 (512)
T ss_dssp             HHHHHHH-----HHHHHHHH------HHHHHHT--TCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCE
T ss_pred             HHHHHHH-----HHHHHHHH------HHHHHHc--CCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCc
Confidence            1111110     01111111      1222222  222211110   124677877652          35677778898


Q ss_pred             -EEEEeCCCCCCCHHHHHHHHHHHHHh---c--CCCeEEEEecCch
Q 048556          420 -ILLLDEATSALDAESERVVQEALDKI---M--INRTTVIVAHRLS  459 (478)
Q Consensus       420 -ililDEpts~LD~~~~~~i~~~l~~~---~--~~~t~i~itH~~~  459 (478)
                       ++++||+++.+|.. ...+.+.+.++   .  .+.++|++|||++
T Consensus       299 ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~  343 (512)
T 2ius_A          299 IVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS  343 (512)
T ss_dssp             EEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred             EEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence             78899999998843 23444444433   2  2679999999997

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.88  E-value=1.1e-10  Score=107.91  Aligned_cols=73  Identities=25%  Similarity=0.321  Sum_probs=62.1

Q ss_pred             eeecCCCEEEEEcCCCCChHHHHHHHhccCC-------------CCccEEEECCeecCCCCHHHhhcceEEEecCCCCCc
Q 048556          284 LSIPSGTTAALVGQSGSGKSTVISLIERFYD-------------PQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFT  350 (478)
Q Consensus       284 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~  350 (478)
                      +..-+|+.++|+||||||||||++.|++.++             |..|+  +||.+..-++.+++++.+   .|+.+++.
T Consensus        14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~   88 (197)
T 3ney_A           14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEF   88 (197)
T ss_dssp             --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEE
T ss_pred             CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhh
Confidence            4445899999999999999999999999886             77888  799999888999988865   68899999


Q ss_pred             ccHHHHHhcCCC
Q 048556          351 SSIKDNINYGKD  362 (478)
Q Consensus       351 ~ti~eNl~~~~~  362 (478)
                      +++.+| .+|.+
T Consensus        89 ~~~~~n-~YGt~   99 (197)
T 3ney_A           89 GSYQGN-MFGTK   99 (197)
T ss_dssp             EEETTE-EEEEE
T ss_pred             hhhhce-ecccc
Confidence            999999 47754

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.81  E-value=3.3e-11  Score=122.57  Aligned_cols=137  Identities=13%  Similarity=0.144  Sum_probs=86.7

Q ss_pred             cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHH
Q 048556          277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDN  356 (478)
Q Consensus       277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eN  356 (478)
                      ++++++++.+++|+.++|+||+|||||||+++|+|.+   +|++..-+.+  +   +.++..++++||...+|    .|+
T Consensus       157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~~~--~---~~~~~~lg~~~q~~~~l----~dd  224 (377)
T 1svm_A          157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVNLP--L---DRLNFELGVAIDQFLVV----FED  224 (377)
T ss_dssp             HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCSSC--T---TTHHHHHGGGTTCSCEE----ETT
T ss_pred             HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEecc--c---hhHHHHHHHhcchhHHH----HHH
Confidence            5899999999999999999999999999999999964   6777541111  1   11233477888876542    223


Q ss_pred             HhcCCC---CC-CHHHHHHHHHHhcHHHHHHh---------CCCCcc-----ccccCCCCCCChHHHHHHHHHHHHcCCC
Q 048556          357 INYGKD---GA-SIAEIMAAAELANAAKFIDS---------LPQGLD-----TMVGEHGTQLSGGQKQRIAIARAILKDP  418 (478)
Q Consensus       357 l~~~~~---~~-~~~~~~~a~~~~~~~~~i~~---------lp~g~~-----t~~~~~g~~LSgGq~Qrl~lARall~~~  418 (478)
                      +.....   .. ....+.   ....+.+.+..         -|+-++     -.+..+...+++|++||++.+.+++.+|
T Consensus       225 ~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~p  301 (377)
T 1svm_A          225 VKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKD  301 (377)
T ss_dssp             CCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred             HHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCC
Confidence            332221   00 001110   11223333321         011111     1234456678999999999988889999


Q ss_pred             CEEE-EeCCCC
Q 048556          419 RILL-LDEATS  428 (478)
Q Consensus       419 ~ili-lDEpts  428 (478)
                      ++++ ||+|+.
T Consensus       302 DLliyLd~~~~  312 (377)
T 1svm_A          302 YLKHCLERSEF  312 (377)
T ss_dssp             HHHHHHHTCTH
T ss_pred             CeEEEEeCCHH
Confidence            9988 999887

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.80  E-value=9.4e-10  Score=102.17  Aligned_cols=55  Identities=18%  Similarity=0.274  Sum_probs=45.1

Q ss_pred             cceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcC
Q 048556          281 GFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG  360 (478)
Q Consensus       281 ~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~  360 (478)
                      ++--++++|++++|+|++||||||+++.|.+.++                       .+.+++|++.++++   +|+.++
T Consensus        13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~   66 (207)
T 2qt1_A           13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETD   66 (207)
T ss_dssp             -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBC
T ss_pred             cccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhcc
Confidence            3445788999999999999999999999999874                       37899999988876   566554


Q ss_pred             C
Q 048556          361 K  361 (478)
Q Consensus       361 ~  361 (478)
                      .
T Consensus        67 ~   67 (207)
T 2qt1_A           67 K   67 (207)
T ss_dssp             T
T ss_pred             c
Confidence            3

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.79  E-value=1.7e-10  Score=105.12  Aligned_cols=71  Identities=20%  Similarity=0.164  Sum_probs=53.8

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccCCC-CccEEE----------ECCeecCCCCHHHhhcceEEEecCCCCCcccHHH
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVL----------IDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKD  355 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-~~G~i~----------~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~e  355 (478)
                      .+|++++|+||||||||||+++|++.+++ ..|.|.          ++|.++...+.+++++.   +.|+.+++.+++.+
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~   79 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED   79 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence            36999999999999999999999999863 345543          35666666676776653   56778888888888


Q ss_pred             HHhcCC
Q 048556          356 NINYGK  361 (478)
Q Consensus       356 Nl~~~~  361 (478)
                      | .+|.
T Consensus        80 n-~yg~   84 (180)
T 1kgd_A           80 A-MYGT   84 (180)
T ss_dssp             E-EEEE
T ss_pred             c-cccc
Confidence            8 4554

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.78  E-value=2.6e-09  Score=98.35  Aligned_cols=137  Identities=20%  Similarity=0.225  Sum_probs=74.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCC-----C------CccEEEECCeecC----CCC-HHHhhcceEEEecCCC--C--Cc
Q 048556          291 TAALVGQSGSGKSTVISLIERFYD-----P------QAGEVLIDGVNLK----EFQ-LKWIRGKIGLVSQEPV--L--FT  350 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~-----~------~~G~i~~~g~~~~----~~~-~~~~r~~i~~v~Q~~~--l--f~  350 (478)
                      +++|+|++|||||||++.++|...     |      ..|+|.++|.++.    +.+ .+.+++......++..  +  |+
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d   86 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD   86 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEE
Confidence            689999999999999999999842     3      3578999997652    222 2222322222223221  1  11


Q ss_pred             ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHh-CCCCcc-ccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCC
Q 048556          351 SSIKDNINYGKDGASIAEIMAAAELANAAKFIDS-LPQGLD-TMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS  428 (478)
Q Consensus       351 ~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~-lp~g~~-t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts  428 (478)
                      .+-..         +.+++....      +.+.. .+.+.- -.++..- .|..-.......||+++.+|++.++|  ||
T Consensus        87 ~~~~~---------s~~~~~~~~------~~~~~~~~~~~~i~~v~nK~-Dl~~~~~~~~~~a~~l~~~~~~~~~d--~S  148 (199)
T 2f9l_A           87 IAKHL---------TYENVERWL------KELRDHADSNIVIMLVGNKS-DLRHLRAVPTDEARAFAEKNNLSFIE--TS  148 (199)
T ss_dssp             TTCHH---------HHHTHHHHH------HHHHHHSCTTCEEEEEEECT-TCGGGCCSCHHHHHHHHHHTTCEEEE--CC
T ss_pred             CcCHH---------HHHHHHHHH------HHHHHhcCCCCeEEEEEECc-ccccccCcCHHHHHHHHHHcCCeEEE--Ee
Confidence            11000         011111100      11111 111111 1112211 12111112245689999999999999  99


Q ss_pred             CCCHHHHHHHHHHHHHh
Q 048556          429 ALDAESERVVQEALDKI  445 (478)
Q Consensus       429 ~LD~~~~~~i~~~l~~~  445 (478)
                      ++|......+++.|.+.
T Consensus       149 al~~~~i~~l~~~l~~~  165 (199)
T 2f9l_A          149 ALDSTNVEEAFKNILTE  165 (199)
T ss_dssp             TTTCTTHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            99999999888887553

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.76  E-value=2.6e-09  Score=116.68  Aligned_cols=135  Identities=16%  Similarity=0.166  Sum_probs=95.1

Q ss_pred             eeeecCCCEEEEEcCCCCChHHHHHHHhccCCC--CccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcC
Q 048556          283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG  360 (478)
Q Consensus       283 s~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~  360 (478)
                      |+++++|.+++|+|++|+|||||++.|++...+  ..|+| .+|.++.++...+.++.+++.+|...++..+++.|+.-.
T Consensus         3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT   81 (665)
T 2dy1_A            3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA   81 (665)
T ss_dssp             ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred             CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence            457889999999999999999999999987765  67988 789999999999989999999999888877666665421


Q ss_pred             CCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH
Q 048556          361 KDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQE  440 (478)
Q Consensus       361 ~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~  440 (478)
                       |...+                                 ++   .....-  .-..++.++++| |+.++++.+++.+ +
T Consensus        82 -pG~~~---------------------------------f~---~~~~~~--l~~ad~~ilVvD-~~~g~~~qt~~~~-~  120 (665)
T 2dy1_A           82 -PGYGD---------------------------------FV---GEIRGA--LEAADAALVAVS-AEAGVQVGTERAW-T  120 (665)
T ss_dssp             -CCSGG---------------------------------GH---HHHHHH--HHHCSEEEEEEE-TTTCSCHHHHHHH-H
T ss_pred             -CCccc---------------------------------hH---HHHHHH--HhhcCcEEEEEc-CCcccchhHHHHH-H
Confidence             11110                                 00   001111  112466788888 9999998887444 3


Q ss_pred             HHHHhcCCCeEEEEecCchhh
Q 048556          441 ALDKIMINRTTVIVAHRLSTV  461 (478)
Q Consensus       441 ~l~~~~~~~t~i~itH~~~~~  461 (478)
                      .++.  .+.++|++.|+++..
T Consensus       121 ~~~~--~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A          121 VAER--LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             HHHH--TTCCEEEEEECGGGC
T ss_pred             HHHH--ccCCEEEEecCCchh
Confidence            3333  356788888887653

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.65  E-value=2.4e-09  Score=102.85  Aligned_cols=52  Identities=27%  Similarity=0.361  Sum_probs=35.9

Q ss_pred             cEEEEeE-EEECCCCCCCcccccceeeecC---CCEEEEEcCCCCChHHHHHHHhccC
Q 048556          260 DIELKDI-YFSYPSRPGEQIFNGFSLSIPS---GTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       260 ~i~~~~v-~~~y~~~~~~~~l~~is~~i~~---G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .++++|+ +|+|.+  +.++|+|+||+|++   |+.++|+|++||||||+.++|++.+
T Consensus        17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            5899999 999932  35799999999999   9999999999999999999999854

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.63  E-value=5.4e-08  Score=101.82  Aligned_cols=114  Identities=23%  Similarity=0.316  Sum_probs=75.4

Q ss_pred             cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHH
Q 048556          277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDN  356 (478)
Q Consensus       277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eN  356 (478)
                      ..++++++.+++|  +.|+||+|+|||||++.+++.....                      +-++         +..+.
T Consensus        39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~----------------------f~~i---------s~~~~   85 (476)
T 2ce7_A           39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP----------------------FFHI---------SGSDF   85 (476)
T ss_dssp             HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC----------------------EEEE---------EGGGT
T ss_pred             HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC----------------------eeeC---------CHHHH
Confidence            4677888888888  8899999999999999999843210                      1111         00000


Q ss_pred             HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCC---------
Q 048556          357 INYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT---------  427 (478)
Q Consensus       357 l~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpt---------  427 (478)
                      ..                                ..+|      .|++++|-.+++|....|.++++||+.         
T Consensus        86 ~~--------------------------------~~~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~  127 (476)
T 2ce7_A           86 VE--------------------------------LFVG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAG  127 (476)
T ss_dssp             TT--------------------------------CCTT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC----
T ss_pred             HH--------------------------------HHhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccc
Confidence            00                                0011      267888999999999999999999993         


Q ss_pred             -CCCCHHHHHHHHHHHHHhc-----CCCeEEEEecCchhh
Q 048556          428 -SALDAESERVVQEALDKIM-----INRTTVIVAHRLSTV  461 (478)
Q Consensus       428 -s~LD~~~~~~i~~~l~~~~-----~~~t~i~itH~~~~~  461 (478)
                       ++.|...++.+.+.+..+.     .+..+|.+||+++.+
T Consensus       128 ~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L  167 (476)
T 2ce7_A          128 LGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL  167 (476)
T ss_dssp             -----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred             cCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence             4667666666666665441     345788899998654

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.63  E-value=3.9e-09  Score=97.62  Aligned_cols=71  Identities=13%  Similarity=0.083  Sum_probs=48.7

Q ss_pred             ceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc-cHHHHH
Q 048556          282 FSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNI  357 (478)
Q Consensus       282 is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNl  357 (478)
                      ..++-++|++++|+||||||||||+++|++.+    |.+.++|.++.... ...+...++++|++..+.. ++.+|+
T Consensus        22 ~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~   93 (200)
T 4eun_A           22 SMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPE-NIATMQRGIPLTDEDRWPWLRSLAEW   93 (200)
T ss_dssp             ------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHH-HHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             hhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHH-HHHHHhcCCCCCCcccccHHHHHHHH
Confidence            34677899999999999999999999999987    89999998775321 1122346888887655443 455554

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.61  E-value=5.1e-08  Score=98.54  Aligned_cols=161  Identities=17%  Similarity=0.154  Sum_probs=83.5

Q ss_pred             cccccceeeecCCCEEEEEcCCCCChHHHHHHHhc--cCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHH
Q 048556          277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIER--FYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIK  354 (478)
Q Consensus       277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g--~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~  354 (478)
                      .+|++++++++   .++++|++|||||||++.|.|  +.++.+|.++-....+.-.+...-.+..+..++.+.       
T Consensus        25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~-------   94 (360)
T 3t34_A           25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPR-------   94 (360)
T ss_dssp             CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTT-------
T ss_pred             cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCC-------
Confidence            58899999998   999999999999999999999  667777766544433211110000122333332221       


Q ss_pred             HHHhcCCCCCCHHHHHHHHHHhcHHHHHHh---------------CCCCcc-ccccC-------CCCCCChHHHHHHHHH
Q 048556          355 DNINYGKDGASIAEIMAAAELANAAKFIDS---------------LPQGLD-TMVGE-------HGTQLSGGQKQRIAIA  411 (478)
Q Consensus       355 eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~---------------lp~g~~-t~~~~-------~g~~LSgGq~Qrl~lA  411 (478)
                            ....+.+++........  +.+..               -|.+.+ +.++-       .+...++.++|+..++
T Consensus        95 ------~~~~~~~~v~~~i~~~~--~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~  166 (360)
T 3t34_A           95 ------KKFTDFAAVRKEIQDET--DRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMV  166 (360)
T ss_dssp             ------CCBSCHHHHHHHHHHHH--HHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHH
T ss_pred             ------cccCCHHHHHHHHHHHH--HHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHH
Confidence                  01112222222211100  00000               011110 11111       1124678899999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-C-CeEEEEec
Q 048556          412 RAILKDPRILLLDEATSALDAESERVVQEALDKIMI-N-RTTVIVAH  456 (478)
Q Consensus       412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~-~t~i~itH  456 (478)
                      ++.+++|+++||.-..+..|..+ ....+.++.+.+ + +|++++|+
T Consensus       167 ~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK  212 (360)
T 3t34_A          167 RSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK  212 (360)
T ss_dssp             HHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred             HHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence            99999999888774334445443 334455555433 3 56666654

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.61  E-value=3.5e-08  Score=100.01  Aligned_cols=141  Identities=11%  Similarity=0.236  Sum_probs=83.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCC-----------CCccEEEECCeecCCCCHHHhhcceEEEecCCCC----CcccHHH
Q 048556          291 TAALVGQSGSGKSTVISLIERFYD-----------PQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVL----FTSSIKD  355 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~-----------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l----f~~ti~e  355 (478)
                      .++|+|++|||||||++.|.|...           |..|.|.++|.++.-      ....|++.+.|.-    |..|. +
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l------~DT~G~i~~lp~~lve~f~~tl-~  253 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIML------VDTVGFIRGIPPQIVDAFFVTL-S  253 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEE------EECCCBCSSCCGGGHHHHHHHH-H
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEE------EeCCCchhcCCHHHHHHHHHHH-H
Confidence            399999999999999999999875           677999999976532      2345666554431    22222 2


Q ss_pred             HHh------cCCCCCCHHH--HHHHHHHhcHHHHHHhC--CCCccccccCCCCCCChHHHHHHHHH----HHH-cCCCCE
Q 048556          356 NIN------YGKDGASIAE--IMAAAELANAAKFIDSL--PQGLDTMVGEHGTQLSGGQKQRIAIA----RAI-LKDPRI  420 (478)
Q Consensus       356 Nl~------~~~~~~~~~~--~~~a~~~~~~~~~i~~l--p~g~~t~~~~~g~~LSgGq~Qrl~lA----Ral-l~~~~i  420 (478)
                      .+.      +.. +.++..  ..+..+  ...+.+..+  ++----.++.+...+|+|++||+.++    +++ ..+|++
T Consensus       254 ~~~~aD~il~Vv-D~s~~~~~~~~~~~--~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~  330 (364)
T 2qtf_A          254 EAKYSDALILVI-DSTFSENLLIETLQ--SSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV  330 (364)
T ss_dssp             GGGGSSEEEEEE-ETTSCHHHHHHHHH--HHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE
T ss_pred             HHHhCCEEEEEE-ECCCCcchHHHHHH--HHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE
Confidence            222      111 111111  111111  112233322  11111223455566788888988877    666 445554


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHh
Q 048556          421 LLLDEATSALDAESERVVQEALDKI  445 (478)
Q Consensus       421 lilDEpts~LD~~~~~~i~~~l~~~  445 (478)
                          +|+|++|......+++.|.+.
T Consensus       331 ----~~~SA~~g~gi~~L~~~I~~~  351 (364)
T 2qtf_A          331 ----IPISALKRTNLELLRDKIYQL  351 (364)
T ss_dssp             ----EECBTTTTBSHHHHHHHHHHH
T ss_pred             ----EEEECCCCcCHHHHHHHHHHH
Confidence                899999999999999888764

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.59  E-value=1.8e-09  Score=99.89  Aligned_cols=52  Identities=29%  Similarity=0.426  Sum_probs=45.6

Q ss_pred             CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEE--EECCeecC
Q 048556          276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV--LIDGVNLK  328 (478)
Q Consensus       276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i--~~~g~~~~  328 (478)
                      ..+.+..++..++|++++|+|||||||||++++|++.+. ..|.+  ++||.++.
T Consensus        12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~   65 (200)
T 3uie_A           12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR   65 (200)
T ss_dssp             CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred             cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence            356788889999999999999999999999999999998 67988  88876653

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.58  E-value=2e-08  Score=100.03  Aligned_cols=80  Identities=20%  Similarity=0.212  Sum_probs=62.3

Q ss_pred             cccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH----HHh-----hcceEEE-ecCCCC
Q 048556          279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL----KWI-----RGKIGLV-SQEPVL  348 (478)
Q Consensus       279 l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~----~~~-----r~~i~~v-~Q~~~l  348 (478)
                      ++++||++++|++++++|++|+||||++..|++.+.+..|+|.+.+.|+.....    ..+     +..+.++ +|....
T Consensus        95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~  174 (320)
T 1zu4_A           95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA  174 (320)
T ss_dssp             -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred             ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence            467899999999999999999999999999999999999999998888755331    234     5678999 666554


Q ss_pred             Ccc-cHHHHHh
Q 048556          349 FTS-SIKDNIN  358 (478)
Q Consensus       349 f~~-ti~eNl~  358 (478)
                      .+. ++++++.
T Consensus       175 ~p~~~~~~~l~  185 (320)
T 1zu4_A          175 DPASVVFDAIK  185 (320)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            443 4555554

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.57  E-value=1.4e-08  Score=93.60  Aligned_cols=62  Identities=18%  Similarity=0.107  Sum_probs=40.3

Q ss_pred             eeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCC
Q 048556          284 LSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVL  348 (478)
Q Consensus       284 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l  348 (478)
                      +++++|++++|+|||||||||++++|.+++.|+.| +.+ +......... .+..++|++|++..
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~~~-~~~~~~~~~~~~~~   62 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMREG-EVDGVDYFFKTRDA   62 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCCTT-CCBTTTBEECCHHH
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCCCC-ccCCCceEEcCHHH
Confidence            47899999999999999999999999999977655 212 1222111111 12347788877543

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.57  E-value=1.1e-08  Score=95.19  Aligned_cols=67  Identities=22%  Similarity=0.164  Sum_probs=44.8

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccCCC-CccEEE----------ECCeecCCCCHHHhhcceEEEecCCCCCcccHHH
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVL----------IDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKD  355 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-~~G~i~----------~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~e  355 (478)
                      ++|++++|+||||||||||++.|++.++| ..+.+.          .+|.+....+.+.+++.+   .|+.+++.+++.+
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~   82 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG   82 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence            68999999999999999999999999976 333333          234444444555554432   4455555555555


Q ss_pred             H
Q 048556          356 N  356 (478)
Q Consensus       356 N  356 (478)
                      |
T Consensus        83 ~   83 (208)
T 3tau_A           83 N   83 (208)
T ss_dssp             E
T ss_pred             c
Confidence            5

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=98.51  E-value=2.4e-09  Score=112.64  Aligned_cols=139  Identities=20%  Similarity=0.247  Sum_probs=94.3

Q ss_pred             EEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEE
Q 048556          262 ELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGL  341 (478)
Q Consensus       262 ~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~  341 (478)
                      +++++...|.+   ...++++++++++|  +.|+||+|+|||||++++++...  .|.+.++|.++.+.......+++..
T Consensus        42 ~l~~lv~~l~~---~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~  114 (499)
T 2dhr_A           42 ELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD  114 (499)
T ss_dssp             HHHHHHHHHHC---GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhc---hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHH
Confidence            44555544532   35899999999999  99999999999999999999875  6889999988765444444556777


Q ss_pred             EecCCC-CCcc-cHHHHHh-cCCCCC-----CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556          342 VSQEPV-LFTS-SIKDNIN-YGKDGA-----SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA  413 (478)
Q Consensus       342 v~Q~~~-lf~~-ti~eNl~-~~~~~~-----~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa  413 (478)
                      ++|... ..+. .+.|++. ++....     ..++..+.+     ...+.               .|||||+|+..+++|
T Consensus       115 lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l-----~~LL~---------------~Ldg~~~~~~viviA  174 (499)
T 2dhr_A          115 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV---------------EMDGFEKDTAIVVMA  174 (499)
T ss_dssp             HTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHH-----HHHHH---------------HGGGCCSSCCCEEEE
T ss_pred             HHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHH-----HHHHH---------------HhcccccCccEEEEE
Confidence            888764 3333 5567773 332111     122222211     12221               367888888888889


Q ss_pred             HcCCCCEEEEeCCCCC
Q 048556          414 ILKDPRILLLDEATSA  429 (478)
Q Consensus       414 ll~~~~ililDEpts~  429 (478)
                      ..++|++  ||||.-.
T Consensus       175 atn~p~~--LD~aLlr  188 (499)
T 2dhr_A          175 ATNRPDI--LDPALLR  188 (499)
T ss_dssp             CCSCGGG--SCTTTSS
T ss_pred             ecCChhh--cCccccc
Confidence            9888887  8888753

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.50  E-value=5.1e-09  Score=111.51  Aligned_cols=71  Identities=27%  Similarity=0.305  Sum_probs=53.0

Q ss_pred             eecCCCEEEEEcCCCCChHHHHHHHhccCCCCcc-EEE-ECCeecCC-------CCHH---HhhcceEEEecCCCCCccc
Q 048556          285 SIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG-EVL-IDGVNLKE-------FQLK---WIRGKIGLVSQEPVLFTSS  352 (478)
Q Consensus       285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G-~i~-~~g~~~~~-------~~~~---~~r~~i~~v~Q~~~lf~~t  352 (478)
                      .+++|++++|+|+||||||||+++|++.+.|++| ++. +||.++.+       ++.+   ..++.+++++|+.     +
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l-----~  439 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI-----T  439 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----H
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----H
Confidence            6789999999999999999999999999999887 784 89976532       2222   2345678888762     3


Q ss_pred             HHHHHhcC
Q 048556          353 IKDNINYG  360 (478)
Q Consensus       353 i~eNl~~~  360 (478)
                      ..+|+.+.
T Consensus       440 ~~~~ivi~  447 (552)
T 3cr8_A          440 KNRGIAIC  447 (552)
T ss_dssp             HTTCEEEE
T ss_pred             hcCCEEEE
Confidence            44555443

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.49  E-value=4.8e-08  Score=90.12  Aligned_cols=45  Identities=18%  Similarity=0.082  Sum_probs=25.1

Q ss_pred             ECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          269 SYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       269 ~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .|+..+..++++|+||++++|+.++|+||+||||||+.+.|++.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A            5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            344444457999999999999999999999999999999999876

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.40  E-value=5.8e-08  Score=87.92  Aligned_cols=66  Identities=18%  Similarity=0.183  Sum_probs=47.2

Q ss_pred             ccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCe--ecCCCCHH----HhhcceEEEecCC
Q 048556          280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGV--NLKEFQLK----WIRGKIGLVSQEP  346 (478)
Q Consensus       280 ~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~--~~~~~~~~----~~r~~i~~v~Q~~  346 (478)
                      +++++++.+| +++|+||||||||||+++|.++..+..|...-.+.  ++-.....    ..+..|.+++|++
T Consensus        18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~   89 (182)
T 3kta_A           18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNE   89 (182)
T ss_dssp             SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECT
T ss_pred             ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCC
Confidence            6789999999 99999999999999999999998877665432221  11111100    1345688999876

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=98.38  E-value=1.1e-06  Score=88.56  Aligned_cols=62  Identities=16%  Similarity=0.125  Sum_probs=49.7

Q ss_pred             CCCCChHHHHHHHHHHHHcCCCCEEEEe-CCCCCCCHHHHHHHHHHHHHhcCCCeEEEEe--cCch
Q 048556          397 GTQLSGGQKQRIAIARAILKDPRILLLD-EATSALDAESERVVQEALDKIMINRTTVIVA--HRLS  459 (478)
Q Consensus       397 g~~LSgGq~Qrl~lARall~~~~ililD-Epts~LD~~~~~~i~~~l~~~~~~~t~i~it--H~~~  459 (478)
                      ...+|+|++|++. +.+...++-++++| ++++++|......+++.+.....++.+|+|.  |++.
T Consensus       229 ~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~  293 (357)
T 2e87_A          229 ISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA  293 (357)
T ss_dssp             STTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred             hhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence            4568999999886 55555677788999 9999999998888888887765577888888  7764

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=98.37  E-value=5.2e-07  Score=100.10  Aligned_cols=67  Identities=15%  Similarity=0.128  Sum_probs=54.1

Q ss_pred             CCCCChHHHHHHHHHHHHcCCCCEEEEeCCCC-CCCHHHHHHHHHHHHHhcCC-CeEEE-EecCchhhhh
Q 048556          397 GTQLSGGQKQRIAIARAILKDPRILLLDEATS-ALDAESERVVQEALDKIMIN-RTTVI-VAHRLSTVRN  463 (478)
Q Consensus       397 g~~LSgGq~Qrl~lARall~~~~ililDEpts-~LD~~~~~~i~~~l~~~~~~-~t~i~-itH~~~~~~~  463 (478)
                      ..-+|+|+.+|..++++++.+++++|+|||.. ++|.+....+++.+....++ +++++ +||+.+.+..
T Consensus       188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~  257 (773)
T 2xau_A          188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQR  257 (773)
T ss_dssp             EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHH
T ss_pred             EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHH
Confidence            34678999999999999999999999999997 99988777777777665544 56666 4898776544

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=98.29  E-value=9.7e-08  Score=96.22  Aligned_cols=55  Identities=15%  Similarity=0.220  Sum_probs=49.9

Q ss_pred             CccEEEEeEEEECCCCCCCcccc--------------cceeeecCCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556          258 RGDIELKDIYFSYPSRPGEQIFN--------------GFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       258 ~~~i~~~~v~~~y~~~~~~~~l~--------------~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      .+.++|+|++|.||.  ++..|+              |+++.+.+|++++|+||+|+|||||++.|++...
T Consensus       131 ~~ri~Fe~ltp~yP~--er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~  199 (422)
T 3ice_A          131 RNKILFENLTPLHAN--SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA  199 (422)
T ss_dssp             TTSCCTTTSCEESCC--SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred             cCCceeccccccCCC--CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence            467999999999985  467888              8999999999999999999999999999999863

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.29  E-value=1.8e-06  Score=86.93  Aligned_cols=58  Identities=21%  Similarity=0.267  Sum_probs=42.8

Q ss_pred             eecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEE-EECCeecCCCCHHHhhcceEEEecC
Q 048556          285 SIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV-LIDGVNLKEFQLKWIRGKIGLVSQE  345 (478)
Q Consensus       285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i-~~~g~~~~~~~~~~~r~~i~~v~Q~  345 (478)
                      -+++|+++.|.||+|||||||+..+++...+..|.+ ++++....+   ..+.+++++.+|+
T Consensus        57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~---~~ra~rlgv~~~~  115 (356)
T 3hr8_A           57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD---PVYAKNLGVDLKS  115 (356)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHHTCCGGG
T ss_pred             CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc---hHHHHHcCCchhh
Confidence            488999999999999999999999999988777765 555543222   1234456665554

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.29  E-value=3.9e-07  Score=84.19  Aligned_cols=70  Identities=17%  Similarity=0.150  Sum_probs=43.9

Q ss_pred             CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhh---hhcCEEEEEeC
Q 048556          400 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTV---RNADLIAVIHQ  472 (478)
Q Consensus       400 LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~---~~~d~i~vl~~  472 (478)
                      .+.|+.+|..+++.++.+|+.+-.+  ++.++|...+.+.+.+... .+.++|+-+|.+...   +.||.+++++-
T Consensus        60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~~  132 (206)
T 1jjv_A           60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVDV  132 (206)
T ss_dssp             ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred             ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence            3678999999999998888644333  3345666666666655443 345788888877553   55899999864

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=98.25  E-value=1.8e-06  Score=86.22  Aligned_cols=108  Identities=12%  Similarity=0.183  Sum_probs=66.2

Q ss_pred             cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHH
Q 048556          277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDN  356 (478)
Q Consensus       277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eN  356 (478)
                      +.|+.+.--+++|+.+.|.|++|+|||||+.-++.......+.+                   .|++=            
T Consensus        34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~V-------------------l~fSl------------   82 (338)
T 4a1f_A           34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGV-------------------AVFSL------------   82 (338)
T ss_dssp             HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEE-------------------EEEES------------
T ss_pred             hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeE-------------------EEEeC------------
Confidence            35666655799999999999999999999988876654332333                   33221            


Q ss_pred             HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCC
Q 048556          357 INYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD  431 (478)
Q Consensus       357 l~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD  431 (478)
                            ..+.+++...+-..     ....  .++....   ..||.++.||++.|...+.+++++|.|+|...+|
T Consensus        83 ------Ems~~ql~~Rlls~-----~~~v--~~~~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~  141 (338)
T 4a1f_A           83 ------EMSAEQLALRALSD-----LTSI--NMHDLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE  141 (338)
T ss_dssp             ------SSCHHHHHHHHHHH-----HHCC--CHHHHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred             ------CCCHHHHHHHHHHH-----hhCC--CHHHHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence                  12333332221100     0000  0111110   2588888888888888888888888888865543

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.22  E-value=1.8e-07  Score=84.11  Aligned_cols=38  Identities=34%  Similarity=0.403  Sum_probs=33.6

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLK  328 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~  328 (478)
                      .+|++++|+|||||||||+++.|++.+    |.+.+++.++.
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~   43 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH   43 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence            568999999999999999999999875    78888887654

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.21  E-value=2.8e-07  Score=85.19  Aligned_cols=48  Identities=17%  Similarity=0.116  Sum_probs=41.2

Q ss_pred             eecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH
Q 048556          285 SIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL  332 (478)
Q Consensus       285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~  332 (478)
                      ..++|++++|+|+|||||||+++.|.+.+++..|.+.+.+.|....+.
T Consensus        18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~   65 (201)
T 1rz3_A           18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVER   65 (201)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCH
T ss_pred             ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCH
Confidence            467899999999999999999999999999888999887776554443

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.21  E-value=3.4e-06  Score=86.82  Aligned_cols=163  Identities=18%  Similarity=0.173  Sum_probs=94.0

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHH-Hhhcce
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLK-WIRGKI  339 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~-~~r~~i  339 (478)
                      +..+++++.|.+.   .  ++++|+  +|++++++|++||||||++..|++.+.+..|+|.+.+.|...-... .++.. 
T Consensus        77 ~v~~~L~~~~~~~---~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~-  148 (425)
T 2ffh_A           77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL-  148 (425)
T ss_dssp             HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH-
T ss_pred             HHHHHHHHHhCCC---c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh-
Confidence            3445666677532   1  678888  8999999999999999999999999999989999988776543221 12110 


Q ss_pred             EEEecCCCCCcccHHHHHhcC--CCCCCHHHHHHHHHHhcHHHHHHhC-CCCccccccCCCCCCC---hHHHHHHHHHHH
Q 048556          340 GLVSQEPVLFTSSIKDNINYG--KDGASIAEIMAAAELANAAKFIDSL-PQGLDTMVGEHGTQLS---GGQKQRIAIARA  413 (478)
Q Consensus       340 ~~v~Q~~~lf~~ti~eNl~~~--~~~~~~~~~~~a~~~~~~~~~i~~l-p~g~~t~~~~~g~~LS---gGq~Qrl~lARa  413 (478)
                                  .-..|+.+.  .+..++.++.        .+.++.+ .+++|..+=+.+..++   .-..+...++++
T Consensus       149 ------------~~~~gv~v~~~~~~~~p~~i~--------~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~  208 (425)
T 2ffh_A          149 ------------GEKVGVPVLEVMDGESPESIR--------RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEV  208 (425)
T ss_dssp             ------------HHHHTCCEEECCTTCCHHHHH--------HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred             ------------cccCCccEEecCCCCCHHHHH--------HHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhc
Confidence                        001122111  1112333432        1222222 2467765533333332   345667778888


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEec
Q 048556          414 ILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAH  456 (478)
Q Consensus       414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH  456 (478)
                      +..++-++++| ++++.|....   .+.+... -+.+-+++|+
T Consensus       209 ~~pd~vlLVvD-a~tgq~av~~---a~~f~~~-l~i~GVIlTK  246 (425)
T 2ffh_A          209 LGPDEVLLVLD-AMTGQEALSV---ARAFDEK-VGVTGLVLTK  246 (425)
T ss_dssp             HCCSEEEEEEE-GGGTTHHHHH---HHHHHHH-TCCCEEEEES
T ss_pred             cCCceEEEEEe-ccchHHHHHH---HHHHHhc-CCceEEEEeC
Confidence            86666677788 4556554432   1222221 2346667775

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.19  E-value=1.7e-06  Score=89.19  Aligned_cols=39  Identities=28%  Similarity=0.355  Sum_probs=34.1

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCee
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVN  326 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~  326 (478)
                      ++.+++++||+||||||++..|++.+.+..+++.+-+.|
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D  134 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD  134 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence            578999999999999999999999999887788775554

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.18  E-value=7.6e-06  Score=82.47  Aligned_cols=45  Identities=18%  Similarity=0.104  Sum_probs=33.3

Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc----CCCeEEEEecCchhh
Q 048556          416 KDPRILLLDEATSALDAESERVVQEALDKIM----INRTTVIVAHRLSTV  461 (478)
Q Consensus       416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~----~~~t~i~itH~~~~~  461 (478)
                      .+|.++++||+... |......+.+.+.+..    .+.++|++||+....
T Consensus       124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~  172 (389)
T 1fnn_A          124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL  172 (389)
T ss_dssp             TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred             CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence            45889999999876 8877777777765433    356788899988543

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.18  E-value=4.2e-07  Score=85.82  Aligned_cols=65  Identities=20%  Similarity=0.183  Sum_probs=49.6

Q ss_pred             ceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCC------CHHH----hhcceEEEecCCCCCc
Q 048556          282 FSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEF------QLKW----IRGKIGLVSQEPVLFT  350 (478)
Q Consensus       282 is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~------~~~~----~r~~i~~v~Q~~~lf~  350 (478)
                      -+.+.++|++++|.|++||||||++++|.++    .|+|.+++.|...+      ...+    .++.+++++|.+.++.
T Consensus        13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~   87 (230)
T 2vp4_A           13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT   87 (230)
T ss_dssp             CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence            4456689999999999999999999999998    68899999876422      1111    2456788888766554

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=98.12  E-value=1e-06  Score=87.70  Aligned_cols=29  Identities=24%  Similarity=0.350  Sum_probs=26.1

Q ss_pred             eecCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          285 SIPSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      -+++|+++.|.||+|||||||+..++...
T Consensus       103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            58999999999999999999998887653

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.11  E-value=5.1e-07  Score=89.68  Aligned_cols=45  Identities=18%  Similarity=0.295  Sum_probs=37.5

Q ss_pred             CcccccceeeecCCC------EEEEEcCCCCChHHHHHHHhccCC--CCccEE
Q 048556          276 EQIFNGFSLSIPSGT------TAALVGQSGSGKSTVISLIERFYD--PQAGEV  320 (478)
Q Consensus       276 ~~~l~~is~~i~~G~------~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~i  320 (478)
                      .+.|++++..+.+++      ++||+||||||||||++.|.+++.  |++|++
T Consensus        73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v  125 (321)
T 3tqc_A           73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNV  125 (321)
T ss_dssp             HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred             hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeE
Confidence            357888888887776      999999999999999999999987  344543

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.98  E-value=1.5e-06  Score=86.80  Aligned_cols=43  Identities=16%  Similarity=0.256  Sum_probs=38.4

Q ss_pred             CcccccceeeecCCCE--EEEEcCCCCChHHHHHHHhccCCCCcc
Q 048556          276 EQIFNGFSLSIPSGTT--AALVGQSGSGKSTVISLIERFYDPQAG  318 (478)
Q Consensus       276 ~~~l~~is~~i~~G~~--~~ivG~sGsGKSTL~~ll~g~~~~~~G  318 (478)
                      ..+++.++..+++|+.  +.+.||+|+||||+++.+++...+..+
T Consensus        31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~   75 (340)
T 1sxj_C           31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY   75 (340)
T ss_dssp             HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence            3689999999999998  999999999999999999998876554

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.94  E-value=4.3e-05  Score=74.40  Aligned_cols=69  Identities=19%  Similarity=0.191  Sum_probs=43.6

Q ss_pred             hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHhcC-----CCeEEEEecCchh-----h
Q 048556          402 GGQKQRIAIARAILKDPRILLLDEATSALDAE----------SERVVQEALDKIMI-----NRTTVIVAHRLST-----V  461 (478)
Q Consensus       402 gGq~Qrl~lARall~~~~ililDEpts~LD~~----------~~~~i~~~l~~~~~-----~~t~i~itH~~~~-----~  461 (478)
                      +++++|-.++++...+|.++++||+.+-.+..          ....+...+.....     +..+|.+|+++..     .
T Consensus        98 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~  177 (297)
T 3b9p_A           98 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAAL  177 (297)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHH
Confidence            56777778888888899999999998776532          22334444444321     2346677887643     2


Q ss_pred             hhcCEEEEE
Q 048556          462 RNADLIAVI  470 (478)
Q Consensus       462 ~~~d~i~vl  470 (478)
                      +.+++++.+
T Consensus       178 ~R~~~~i~~  186 (297)
T 3b9p_A          178 RRFTKRVYV  186 (297)
T ss_dssp             HHCCEEEEC
T ss_pred             hhCCeEEEe
Confidence            346665544

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.93  E-value=4.8e-06  Score=83.50  Aligned_cols=28  Identities=18%  Similarity=0.163  Sum_probs=26.0

Q ss_pred             eecCCCEEEEEcCCCCChHHHHHHHhcc
Q 048556          285 SIPSGTTAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      -+++|+++.|.||+|||||||+..++..
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999999988875

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=97.92  E-value=1.2e-05  Score=83.35  Aligned_cols=42  Identities=17%  Similarity=0.284  Sum_probs=33.9

Q ss_pred             CCCEEEEeCCCCCCCH-HHHHHHHHHHHHhc-CCCeEEEEecCc
Q 048556          417 DPRILLLDEATSALDA-ESERVVQEALDKIM-INRTTVIVAHRL  458 (478)
Q Consensus       417 ~~~ililDEpts~LD~-~~~~~i~~~l~~~~-~~~t~i~itH~~  458 (478)
                      +|++|++||+..-.+. .+...++..+.... .++.+|++||+.
T Consensus       194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~  237 (440)
T 2z4s_A          194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE  237 (440)
T ss_dssp             TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred             CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence            8999999999887764 57778888887654 467888999984

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.90  E-value=2.5e-06  Score=90.99  Aligned_cols=79  Identities=16%  Similarity=0.186  Sum_probs=48.6

Q ss_pred             EEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEE
Q 048556          263 LKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLV  342 (478)
Q Consensus       263 ~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v  342 (478)
                      ++++...|.   +..+++++++++ +|+.++|+||||+|||||++.|++...+..|.|.++|......-....++.+++.
T Consensus        86 ~~~vk~~i~---~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~  161 (543)
T 3m6a_A           86 LEKVKERIL---EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAM  161 (543)
T ss_dssp             CHHHHHHHH---HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------------------
T ss_pred             HHHHHHHHH---HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccC
Confidence            344544552   135788889888 8999999999999999999999999999899998887543211112223456665


Q ss_pred             ecC
Q 048556          343 SQE  345 (478)
Q Consensus       343 ~Q~  345 (478)
                      +|.
T Consensus       162 ~~~  164 (543)
T 3m6a_A          162 PGR  164 (543)
T ss_dssp             --C
T ss_pred             chH
Confidence            553

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.87  E-value=2.8e-05  Score=73.35  Aligned_cols=29  Identities=31%  Similarity=0.320  Sum_probs=24.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCCCCccE
Q 048556          291 TAALVGQSGSGKSTVISLIERFYDPQAGE  319 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~  319 (478)
                      .++|+|++|+|||||++.|+|...+.+|.
T Consensus        31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~   59 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSILGRKVFHSGT   59 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence            68999999999999999999987665553

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.87  E-value=9e-06  Score=84.28  Aligned_cols=70  Identities=26%  Similarity=0.320  Sum_probs=45.0

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccCC------------CCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc-cHHHH
Q 048556          290 TTAALVGQSGSGKSTVISLIERFYD------------PQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDN  356 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~~------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eN  356 (478)
                      -+++|+|+||+|||||++.|+|...            |.+|.+.++|.++.-+|....++...+.+|....|.. +..++
T Consensus       181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~  260 (439)
T 1mky_A          181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS  260 (439)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence            3799999999999999999999853            6789999999987666655556666666676666653 45556


Q ss_pred             Hhc
Q 048556          357 INY  359 (478)
Q Consensus       357 l~~  359 (478)
                      +..
T Consensus       261 i~~  263 (439)
T 1mky_A          261 IEK  263 (439)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            544

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=97.82  E-value=3.8e-05  Score=76.01  Aligned_cols=36  Identities=6%  Similarity=0.074  Sum_probs=30.8

Q ss_pred             cccccceeeecCCCEEEEEcCCCCChHHHHHHHhcc
Q 048556          277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +.|+++.--+++|+.+.|.|++|+|||||+.-++.-
T Consensus        56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~   91 (315)
T 3bh0_A           56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN   91 (315)
T ss_dssp             HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            457777666999999999999999999998887754

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.82  E-value=5.3e-06  Score=83.28  Aligned_cols=30  Identities=17%  Similarity=0.344  Sum_probs=26.5

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccCCCC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFYDPQ  316 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~  316 (478)
                      +++..+.|.||+|+|||||++.+++...+.
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~   72 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK   72 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            567899999999999999999999987654

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.80  E-value=5.5e-06  Score=75.89  Aligned_cols=58  Identities=19%  Similarity=0.415  Sum_probs=41.3

Q ss_pred             EEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhcc--------CCCCccEEEECCeec
Q 048556          267 YFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERF--------YDPQAGEVLIDGVNL  327 (478)
Q Consensus       267 ~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~--------~~~~~G~i~~~g~~~  327 (478)
                      +|+|++-  .++++++|++.+++ +++++|++|+|||||++.+.+-        ..++.+.+.++|.++
T Consensus         6 ~~~~~~~--~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l   71 (198)
T 1f6b_A            6 DWIYSGF--SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF   71 (198)
T ss_dssp             ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEE
T ss_pred             HHHHHHH--HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEE
Confidence            4567643  46899999998887 6899999999999999999872        234567787877554

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.80  E-value=3.7e-06  Score=75.74  Aligned_cols=40  Identities=38%  Similarity=0.487  Sum_probs=32.9

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccCCCCcc--EEEECCeec
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFYDPQAG--EVLIDGVNL  327 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G--~i~~~g~~~  327 (478)
                      ++|++++|+|++||||||+++.|.+.+++ .|  .+.+|+..+
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~   44 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI   44 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence            47999999999999999999999998876 56  666665444

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.79  E-value=3.4e-06  Score=84.57  Aligned_cols=51  Identities=18%  Similarity=0.221  Sum_probs=45.7

Q ss_pred             cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeec
Q 048556          277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNL  327 (478)
Q Consensus       277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~  327 (478)
                      .+++++++.+++|.+++|+|++|+|||||++.|++.+.+..|++.+-+.|.
T Consensus        44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~   94 (341)
T 2p67_A           44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP   94 (341)
T ss_dssp             HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence            578899999999999999999999999999999999988888887766554

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.78  E-value=4e-05  Score=75.78  Aligned_cols=29  Identities=14%  Similarity=0.181  Sum_probs=24.9

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccCCCC
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFYDPQ  316 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~  316 (478)
                      ++..+.|.||+|+|||||++.+++...+.
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~   64 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR   64 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence            45689999999999999999999876543

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.77  E-value=9.6e-06  Score=72.28  Aligned_cols=33  Identities=27%  Similarity=0.342  Sum_probs=27.9

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECC
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG  324 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g  324 (478)
                      .|+.++|+|||||||||+++.|++.+.+    ..+|+
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~   35 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS   35 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence            4789999999999999999999998754    45554

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=97.76  E-value=3.1e-05  Score=73.04  Aligned_cols=140  Identities=14%  Similarity=0.163  Sum_probs=76.5

Q ss_pred             eecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc-cHHHHHhcCCCC
Q 048556          285 SIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYGKDG  363 (478)
Q Consensus       285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNl~~~~~~  363 (478)
                      .+.+|+.++++||+||||||++.+.........|.                ...+.++.+.|..... ++.+|+......
T Consensus        72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~  135 (235)
T 3llm_A           72 AISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGE  135 (235)
T ss_dssp             HHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTC
T ss_pred             HHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhcc
Confidence            34679999999999999999888764322111111                1345667777765443 677776532111


Q ss_pred             CCHHHHHHHHHHhcHHHHHHhCCCCcccc----ccCC---CCCCChHHHHHHHHHHHHcCCCCEEEEeCCCC-CCCHHHH
Q 048556          364 ASIAEIMAAAELANAAKFIDSLPQGLDTM----VGEH---GTQLSGGQKQRIAIARAILKDPRILLLDEATS-ALDAESE  435 (478)
Q Consensus       364 ~~~~~~~~a~~~~~~~~~i~~lp~g~~t~----~~~~---g~~LSgGq~Qrl~lARall~~~~ililDEpts-~LD~~~~  435 (478)
                      .-                  ....|+...    ....   ..--+.|+-.+.  .+.-+++-+++|+||+-. ++|....
T Consensus       136 ~~------------------~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~  195 (235)
T 3llm_A          136 EP------------------GKSCGYSVRFESILPRPHASIMFCTVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFL  195 (235)
T ss_dssp             CT------------------TSSEEEEETTEEECCCSSSEEEEEEHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHH
T ss_pred             cc------------------CceEEEeechhhccCCCCCeEEEECHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHH
Confidence            00                  000011111    1000   011234655554  344688999999999976 5777766


Q ss_pred             HHHHHHHHHhcCC-CeEEEE-ecCchh
Q 048556          436 RVVQEALDKIMIN-RTTVIV-AHRLST  460 (478)
Q Consensus       436 ~~i~~~l~~~~~~-~t~i~i-tH~~~~  460 (478)
                      ....+.+....++ +++++. |...+.
T Consensus       196 ~~~l~~i~~~~~~~~~il~SAT~~~~~  222 (235)
T 3llm_A          196 LVVLRDVVQAYPEVRIVLMSATIDTSM  222 (235)
T ss_dssp             HHHHHHHHHHCTTSEEEEEECSSCCHH
T ss_pred             HHHHHHHHhhCCCCeEEEEecCCCHHH
Confidence            5455555554444 444444 444443

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.75  E-value=7.8e-06  Score=77.19  Aligned_cols=43  Identities=23%  Similarity=0.270  Sum_probs=31.8

Q ss_pred             cccceeeec---CCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556          279 FNGFSLSIP---SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI  322 (478)
Q Consensus       279 l~~is~~i~---~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~  322 (478)
                      |.+.|+.++   +|..++|.|++||||||+++.|...+.+ .+.+..
T Consensus        13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~   58 (229)
T 4eaq_A           13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM   58 (229)
T ss_dssp             -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred             ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence            555666655   8999999999999999999999999987 666654

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.73  E-value=0.00015  Score=68.96  Aligned_cols=45  Identities=27%  Similarity=0.395  Sum_probs=29.2

Q ss_pred             ccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCee
Q 048556          278 IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVN  326 (478)
Q Consensus       278 ~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~  326 (478)
                      .++++++..++|  +.|+||+|+|||||++.+++.....  -+.+++.+
T Consensus        36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~   80 (257)
T 1lv7_A           36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSD   80 (257)
T ss_dssp             GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCS
T ss_pred             HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHH
Confidence            345555555555  8999999999999999999876432  24454433

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.69  E-value=5.6e-06  Score=76.82  Aligned_cols=43  Identities=35%  Similarity=0.321  Sum_probs=37.9

Q ss_pred             eeecCCCEEEEEcCCCCChHHHHHHHhccCCCCcc--EEEECCee
Q 048556          284 LSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG--EVLIDGVN  326 (478)
Q Consensus       284 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G--~i~~~g~~  326 (478)
                      +.+++|..++|+|++||||||+.+.|.+.+.|..|  .+.++|.+
T Consensus        20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~   64 (211)
T 1m7g_A           20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN   64 (211)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred             ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence            55789999999999999999999999999988888  88887543

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.68  E-value=5.2e-08  Score=94.16  Aligned_cols=74  Identities=15%  Similarity=0.101  Sum_probs=64.5

Q ss_pred             CCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCE--EEEeCCCCCCCHHH---------HHHHHHHHHHhcCCCeEEE
Q 048556          385 LPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI--LLLDEATSALDAES---------ERVVQEALDKIMINRTTVI  453 (478)
Q Consensus       385 lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~i--lilDEpts~LD~~~---------~~~i~~~l~~~~~~~t~i~  453 (478)
                      +|+++++.+++++..+|+|  ||++++|+++.+|++  +|+||+|+++|...         +..+.+.++...+++|.+.
T Consensus       158 l~~~l~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~  235 (261)
T 2eyu_A          158 LSFILQGIISQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLE  235 (261)
T ss_dssp             HHHHEEEEEEEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHH
T ss_pred             HHHHhhEEEEEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHH
Confidence            4568999999999999999  999999999999999  99999999999873         3456777777788999999


Q ss_pred             EecCchh
Q 048556          454 VAHRLST  460 (478)
Q Consensus       454 itH~~~~  460 (478)
                      ++||++.
T Consensus       236 ~a~r~~~  242 (261)
T 2eyu_A          236 DAMEASP  242 (261)
T ss_dssp             HHHHHCS
T ss_pred             HHHHHhC
Confidence            9999763

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.65  E-value=1.1e-05  Score=81.19  Aligned_cols=42  Identities=24%  Similarity=0.390  Sum_probs=36.5

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLK  328 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~  328 (478)
                      +++.+++|+|++|||||||++.|.|.+.+.+|+|.+.+.|..
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~  113 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS  113 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence            457899999999999999999999999888898888776654

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.65  E-value=3.3e-05  Score=75.96  Aligned_cols=141  Identities=17%  Similarity=0.165  Sum_probs=73.9

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE-CCeecCCCCHHHhhcceEEEecCCCC--CcccHHHHHhcCCCCC
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI-DGVNLKEFQLKWIRGKIGLVSQEPVL--FTSSIKDNINYGKDGA  364 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~-~g~~~~~~~~~~~r~~i~~v~Q~~~l--f~~ti~eNl~~~~~~~  364 (478)
                      ++.+++|+|++|+|||||++.|.|..      +.+ .+.+-.     ..++..++++++..-  |-+|         |..
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~t-----Tr~~~~gi~~~~~~~i~~iDT---------pG~   66 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQT-----TRHRIVGIHTEGAYQAIYVDT---------PGL   66 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSSC-----CSSCEEEEEEETTEEEEEESS---------SSC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCCc-----ceeeEEEEEEECCeeEEEEEC---------cCC
Confidence            34489999999999999999999863      111 111111     123446777776531  2122         222


Q ss_pred             CHHHHHHHHHHhcHHHHHHhCCCC---ccc--cccCCCCCCChHHHHHHHHHHHHc--CCCCEEEEeCCCCCCCHHH-HH
Q 048556          365 SIAEIMAAAELANAAKFIDSLPQG---LDT--MVGEHGTQLSGGQKQRIAIARAIL--KDPRILLLDEATSALDAES-ER  436 (478)
Q Consensus       365 ~~~~~~~a~~~~~~~~~i~~lp~g---~~t--~~~~~g~~LSgGq~Qrl~lARall--~~~~ililDEpts~LD~~~-~~  436 (478)
                      .. +-......    ++.......   .|-  .+-+... +|+|++   .+++++.  ..|.++++    +-+|... ..
T Consensus        67 ~~-~~~~~l~~----~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~  133 (301)
T 1ega_A           67 HM-EEKRAINR----LMNKAASSSIGDVELVIFVVEGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKA  133 (301)
T ss_dssp             CH-HHHHHHHH----HHTCCTTSCCCCEEEEEEEEETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHH
T ss_pred             Cc-cchhhHHH----HHHHHHHHHHhcCCEEEEEEeCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHH
Confidence            10 11111110    111111111   222  1122223 999886   5566666  67888888    6777765 55


Q ss_pred             HHHHHHHHhcC--C--CeEEEEecCchhh
Q 048556          437 VVQEALDKIMI--N--RTTVIVAHRLSTV  461 (478)
Q Consensus       437 ~i~~~l~~~~~--~--~t~i~itH~~~~~  461 (478)
                      .+.+.+.++.+  +  .++.+.+|.-.-+
T Consensus       134 ~~~~~l~~l~~~~~~~~~i~iSA~~g~~v  162 (301)
T 1ega_A          134 DLLPHLQFLASQMNFLDIVPISAETGLNV  162 (301)
T ss_dssp             HHHHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred             HHHHHHHHHHHhcCcCceEEEECCCCCCH
Confidence            56666665543  2  2455667765443

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.65  E-value=8.2e-06  Score=75.25  Aligned_cols=30  Identities=23%  Similarity=0.336  Sum_probs=26.5

Q ss_pred             eecCCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556          285 SIPSGTTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      ...+|..++|+||||||||||.+.|...++
T Consensus         8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A            8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            457899999999999999999999998764

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.64  E-value=5.7e-05  Score=69.12  Aligned_cols=27  Identities=22%  Similarity=0.274  Sum_probs=23.9

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccCCCC
Q 048556          290 TTAALVGQSGSGKSTVISLIERFYDPQ  316 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~~~~  316 (478)
                      ..+.|.||+|+|||||++.++......
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~   81 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKR   81 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            789999999999999999999876543

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.60  E-value=0.0001  Score=72.27  Aligned_cols=32  Identities=16%  Similarity=0.303  Sum_probs=28.2

Q ss_pred             eeeecCCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556          283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       283 s~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      ++.++++..+.|.||+|+|||||++.+++...
T Consensus        43 ~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~   74 (301)
T 3cf0_A           43 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ   74 (301)
T ss_dssp             HHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred             HcCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence            34578899999999999999999999998763

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.56  E-value=3.4e-05  Score=69.95  Aligned_cols=50  Identities=18%  Similarity=0.473  Sum_probs=29.6

Q ss_pred             cccccceeeecCCCEEEEEcCCCCChHHHHHHHhc----c----CCCCccEEEECCeec
Q 048556          277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIER----F----YDPQAGEVLIDGVNL  327 (478)
Q Consensus       277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g----~----~~~~~G~i~~~g~~~  327 (478)
                      .+++++|++.++. +++++|++|+|||||++.+.+    .    ..++.+.+.++|..+
T Consensus        12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~   69 (190)
T 1m2o_B           12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKF   69 (190)
T ss_dssp             ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEE
T ss_pred             HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEE
Confidence            3788999988776 889999999999999999997    2    233456777777544

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.54  E-value=3.3e-05  Score=72.02  Aligned_cols=28  Identities=18%  Similarity=0.114  Sum_probs=25.0

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccCCC
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFYDP  315 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~  315 (478)
                      ++..+.|.||+|+|||||++.++.....
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~   78 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANE   78 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            6889999999999999999999877653

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.54  E-value=5.6e-06  Score=78.37  Aligned_cols=70  Identities=17%  Similarity=0.223  Sum_probs=43.4

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHh---ccCCCCccEEE--------ECCeecCCCC-HHHhhcceEEEe------cCCCCC
Q 048556          288 SGTTAALVGQSGSGKSTVISLIE---RFYDPQAGEVL--------IDGVNLKEFQ-LKWIRGKIGLVS------QEPVLF  349 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~---g~~~~~~G~i~--------~~g~~~~~~~-~~~~r~~i~~v~------Q~~~lf  349 (478)
                      +.-+++|.||+||||||+.+.|+   |+...+.|.++        -+|.+..+.. ..++.+.+.+.+      |..+++
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~   87 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLA   87 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEET
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEEC
Confidence            34589999999999999999998   55445566652        3455554432 334455555555      233344


Q ss_pred             cccHHHHH
Q 048556          350 TSSIKDNI  357 (478)
Q Consensus       350 ~~ti~eNl  357 (478)
                      ...+.++|
T Consensus        88 g~~v~~~i   95 (233)
T 3r20_A           88 GEDVSSEI   95 (233)
T ss_dssp             TEECTTGG
T ss_pred             Ceehhhhh
Confidence            44555544

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.52  E-value=2.3e-05  Score=77.93  Aligned_cols=43  Identities=12%  Similarity=0.319  Sum_probs=33.2

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchh
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLST  460 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~  460 (478)
                      +++++++|| ...+++.....+.+.+.+...+..+|+++++...
T Consensus       133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~  175 (353)
T 1sxj_D          133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR  175 (353)
T ss_dssp             SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred             CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence            567999999 6788888888888888776555567777777653

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.51  E-value=0.00023  Score=68.59  Aligned_cols=28  Identities=21%  Similarity=0.288  Sum_probs=25.0

Q ss_pred             ecCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          286 IPSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       286 i~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      ++++..+.|.||+|+|||||++.++...
T Consensus        48 ~~~~~~~ll~G~~GtGKT~la~~la~~~   75 (285)
T 3h4m_A           48 IEPPKGILLYGPPGTGKTLLAKAVATET   75 (285)
T ss_dssp             CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            4677889999999999999999998865

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.51  E-value=4.3e-05  Score=68.16  Aligned_cols=27  Identities=19%  Similarity=0.410  Sum_probs=23.5

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      ++|.+++|+|++|+|||||++.+.+..
T Consensus         2 ~~~~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            468899999999999999999999864

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.49  E-value=0.00019  Score=70.03  Aligned_cols=31  Identities=13%  Similarity=0.225  Sum_probs=27.2

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccCCCCccEE
Q 048556          290 TTAALVGQSGSGKSTVISLIERFYDPQAGEV  320 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i  320 (478)
                      ..+.|+||+|+||||+++.+++...+.+|.+
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~   78 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM   78 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence            5799999999999999999999987766643

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.46  E-value=5.6e-05  Score=68.39  Aligned_cols=32  Identities=25%  Similarity=0.446  Sum_probs=26.8

Q ss_pred             cceeeecCCCEEEEEcCCCCChHHHHHHHhcc
Q 048556          281 GFSLSIPSGTTAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       281 ~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      ++|++.++|..++|+|++||||||+.+.|...
T Consensus         2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            57899999999999999999999999999876

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.45  E-value=6.6e-05  Score=65.83  Aligned_cols=31  Identities=29%  Similarity=0.500  Sum_probs=25.1

Q ss_pred             ccceeeecCCCEEEEEcCCCCChHHHHHHHhc
Q 048556          280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       280 ~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      ++..+++.+| ..+|+|||||||||++.+|.-
T Consensus        15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence            3455566655 899999999999999999873

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.45  E-value=2.6e-05  Score=76.56  Aligned_cols=62  Identities=18%  Similarity=0.227  Sum_probs=49.2

Q ss_pred             EEEeEEEECCCCCCCccccc-ceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCC
Q 048556          262 ELKDIYFSYPSRPGEQIFNG-FSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE  329 (478)
Q Consensus       262 ~~~~v~~~y~~~~~~~~l~~-is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~  329 (478)
                      ..++++..|.+.   .  ++ ++++.+ |++++++|++|+||||++..|++.+.+..|++.+.+.|...
T Consensus        76 ~~~~l~~~~~~~---~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r  138 (297)
T 1j8m_F           76 VYDELSNLFGGD---K--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR  138 (297)
T ss_dssp             HHHHHHHHTTCS---C--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred             HHHHHHHHhccc---c--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            345555566432   1  46 888877 99999999999999999999999999888899987777644

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.42  E-value=0.00046  Score=59.80  Aligned_cols=41  Identities=10%  Similarity=0.022  Sum_probs=30.2

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCc
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRL  458 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~  458 (478)
                      +..++++||.- .|++.....+.+.+.....+..+|.+|++.
T Consensus        76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~  116 (145)
T 3n70_A           76 QGGTLVLSHPE-HLTREQQYHLVQLQSQEHRPFRLIGIGDTS  116 (145)
T ss_dssp             TTSCEEEECGG-GSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred             CCcEEEEcChH-HCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence            44689999984 678888888888885544455677777653

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.38  E-value=0.00022  Score=65.83  Aligned_cols=44  Identities=14%  Similarity=0.147  Sum_probs=32.8

Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchh
Q 048556          416 KDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLST  460 (478)
Q Consensus       416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~  460 (478)
                      .+|.++++||+-. +|......+.+.+.+...+..+|++|++...
T Consensus       125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~  168 (250)
T 1njg_A          125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQK  168 (250)
T ss_dssp             SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred             CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence            4578999999866 7888777887777654445677888887654

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.33  E-value=6.4e-05  Score=67.93  Aligned_cols=37  Identities=27%  Similarity=0.396  Sum_probs=32.0

Q ss_pred             eecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEE
Q 048556          285 SIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL  321 (478)
Q Consensus       285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~  321 (478)
                      ..++|..++|+|++||||||+.+.|++.+.+..|.+.
T Consensus         9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~   45 (186)
T 2yvu_A            9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVE   45 (186)
T ss_dssp             CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence            4467999999999999999999999999887766653

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.28  E-value=1.1e-05  Score=73.57  Aligned_cols=22  Identities=36%  Similarity=0.540  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      .++|+|++||||||+.+.|+..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~   23 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKK   23 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHh
Confidence            6899999999999999999984

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.28  E-value=0.00064  Score=68.29  Aligned_cols=37  Identities=22%  Similarity=0.287  Sum_probs=29.6

Q ss_pred             cccccceee---ecCCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556          277 QIFNGFSLS---IPSGTTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       277 ~~l~~is~~---i~~G~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      +.|+.+ +.   +++|+++.|.||+|||||||+..++....
T Consensus        49 ~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~   88 (356)
T 1u94_A           49 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ   88 (356)
T ss_dssp             HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            455554 33   88999999999999999999988776543

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.20  E-value=8.8e-05  Score=67.94  Aligned_cols=34  Identities=35%  Similarity=0.440  Sum_probs=27.2

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCee
Q 048556          289 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVN  326 (478)
Q Consensus       289 G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~  326 (478)
                      ..+++|+|++||||||+.+.|.+.+    |...+++.+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~   51 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDA   51 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCc
Confidence            5689999999999999999999876    444555433

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.20  E-value=0.00023  Score=62.74  Aligned_cols=24  Identities=29%  Similarity=0.383  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCC
Q 048556          291 TAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      +++++|++|+|||||++.+.|...
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~~~~   28 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTGENV   28 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCe
Confidence            689999999999999999998653

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.20  E-value=0.00018  Score=73.20  Aligned_cols=41  Identities=22%  Similarity=0.358  Sum_probs=34.7

Q ss_pred             eecCCCEEEEEcCCCCChHHHHHHHhcc-----------CCCCccEEEECCe
Q 048556          285 SIPSGTTAALVGQSGSGKSTVISLIERF-----------YDPQAGEVLIDGV  325 (478)
Q Consensus       285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~-----------~~~~~G~i~~~g~  325 (478)
                      .++.|..++|+|++|+|||||++.|.|.           .+|..|.+.++|.
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~   69 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE   69 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence            5678899999999999999999999998           6788898887764

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.20  E-value=3.4e-05  Score=77.86  Aligned_cols=56  Identities=21%  Similarity=0.251  Sum_probs=36.5

Q ss_pred             CccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556          258 RGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI  322 (478)
Q Consensus       258 ~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~  322 (478)
                      .+.+.++|++..|..   +.++++++|+|      +|+|++|+|||||++.|.+...+..|.+..
T Consensus        15 ~~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~   70 (361)
T 2qag_A           15 PGYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPG   70 (361)
T ss_dssp             ------CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC--------
T ss_pred             CceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccC
Confidence            356889999888852   46889999877      999999999999999998876655555433

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.16  E-value=0.00012  Score=69.95  Aligned_cols=41  Identities=32%  Similarity=0.470  Sum_probs=33.6

Q ss_pred             eecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeec
Q 048556          285 SIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNL  327 (478)
Q Consensus       285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~  327 (478)
                      ..+++..+.++|++||||||+.+.|.+.+.  .|.+.+++..+
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~   68 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF   68 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence            566788999999999999999999998875  25677777554

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=97.14  E-value=0.00073  Score=67.53  Aligned_cols=38  Identities=24%  Similarity=0.422  Sum_probs=29.7

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG  324 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g  324 (478)
                      .+|..+.|.||+|+||||+++.++.........+.+++
T Consensus        68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~  105 (368)
T 3uk6_A           68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG  105 (368)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence            45678999999999999999999988764434444444

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.12  E-value=0.00019  Score=64.30  Aligned_cols=22  Identities=32%  Similarity=0.483  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+++.
T Consensus         9 ~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            9 EIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999984

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.12  E-value=0.00014  Score=66.35  Aligned_cols=46  Identities=30%  Similarity=0.504  Sum_probs=34.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC-------------CCCccEEEECCeecCCCCHHHhhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERFY-------------DPQAGEVLIDGVNLKEFQLKWIRGK  338 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~-------------~~~~G~i~~~g~~~~~~~~~~~r~~  338 (478)
                      .+.|+||||||||||++.|..-+             +|-.|++  ||++..-++.+++.+.
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~dY~Fvs~~eF~~~   61 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSM   61 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTTBEECCHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCceeEeecHHHHHHH
Confidence            37899999999999999986443             4456764  7888777776666543

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.11  E-value=0.0032  Score=64.83  Aligned_cols=35  Identities=29%  Similarity=0.507  Sum_probs=28.2

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI  322 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~  322 (478)
                      ++.+++++|++|+||||++.-|+..+....-++.+
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll  133 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV  133 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence            46799999999999999999999888754334443

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=97.08  E-value=0.00082  Score=69.55  Aligned_cols=39  Identities=10%  Similarity=0.142  Sum_probs=32.1

Q ss_pred             cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC
Q 048556          277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP  315 (478)
Q Consensus       277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~  315 (478)
                      +.|+.+.--+++|+.+.|.|++|+|||||+.-++.-...
T Consensus       188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~  226 (444)
T 2q6t_A          188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAAL  226 (444)
T ss_dssp             HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            456666655899999999999999999999888876543

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.07  E-value=0.00023  Score=64.16  Aligned_cols=38  Identities=18%  Similarity=0.171  Sum_probs=30.3

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhccCCCC---ccEEEECCee
Q 048556          289 GTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGVN  326 (478)
Q Consensus       289 G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~  326 (478)
                      -..++|+|+||||||||++.|.+.+.+.   -|.|..++.+
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~   46 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD   46 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence            3689999999999999999999886543   3777777654

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.01  E-value=0.00026  Score=64.70  Aligned_cols=21  Identities=38%  Similarity=0.597  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 048556          291 TAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      +++|+|++||||||+++.|++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            689999999999999999999

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.01  E-value=0.00036  Score=64.33  Aligned_cols=29  Identities=31%  Similarity=0.547  Sum_probs=23.9

Q ss_pred             cceeeecCCCEEEEEcCCCCChHHHHHHHh
Q 048556          281 GFSLSIPSGTTAALVGQSGSGKSTVISLIE  310 (478)
Q Consensus       281 ~is~~i~~G~~~~ivG~sGsGKSTL~~ll~  310 (478)
                      +.++++.+| ..+|+|||||||||++.+|.
T Consensus        16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence            455666654 89999999999999999885

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.99  E-value=0.00014  Score=72.70  Aligned_cols=37  Identities=27%  Similarity=0.383  Sum_probs=33.9

Q ss_pred             cccccceeeecCCCE--EEEEcCCCCChHHHHHHHhccC
Q 048556          277 QIFNGFSLSIPSGTT--AALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       277 ~~l~~is~~i~~G~~--~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .+++++++.+++|+.  ++|+|++||||||+.++|++.+
T Consensus        10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l   48 (359)
T 2ga8_A           10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII   48 (359)
T ss_dssp             HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence            478899999999999  9999999999999999998864

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.99  E-value=0.0026  Score=63.71  Aligned_cols=27  Identities=22%  Similarity=0.245  Sum_probs=24.1

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      ++...+.|.||+|+|||||++.++...
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~  141 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQS  141 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence            567789999999999999999998765

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.98  E-value=0.0057  Score=59.35  Aligned_cols=27  Identities=22%  Similarity=0.396  Sum_probs=23.1

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      ++..+.|.||+|+||||+++.++..+.
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l~   92 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLLH   92 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            456789999999999999998887763

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=96.97  E-value=0.00036  Score=62.55  Aligned_cols=25  Identities=28%  Similarity=0.522  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCCC
Q 048556          291 TAALVGQSGSGKSTVISLIERFYDP  315 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~~  315 (478)
                      +++|+|++|+|||||++.+.+...+
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~~~~   28 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKTKKS   28 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC---
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCc
Confidence            6899999999999999999997543

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.94  E-value=0.0039  Score=58.85  Aligned_cols=27  Identities=22%  Similarity=0.286  Sum_probs=22.9

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      ++..-+.|.||+|+||||+++.++...
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~~~   63 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVATEA   63 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            344568899999999999999998754

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.93  E-value=0.00045  Score=61.53  Aligned_cols=27  Identities=22%  Similarity=0.349  Sum_probs=24.0

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      .|..+.|+|+|||||||+.+.|...+.
T Consensus         2 ~~~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            2 TTRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            367899999999999999999998764

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.91  E-value=0.00033  Score=62.89  Aligned_cols=27  Identities=26%  Similarity=0.420  Sum_probs=23.3

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .+|..++|+|++||||||+.+.|+..+
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            367899999999999999999998543

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.91  E-value=0.0005  Score=68.75  Aligned_cols=29  Identities=31%  Similarity=0.481  Sum_probs=25.3

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccCCC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFYDP  315 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~  315 (478)
                      ..+..+.|.||+|+|||||++.+......
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~   70 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRLEA   70 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence            56778999999999999999999987643

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=96.91  E-value=0.00049  Score=71.51  Aligned_cols=56  Identities=13%  Similarity=0.185  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHcCCCCEEEEeCC-CCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhh
Q 048556          403 GQKQRIAIARAILKDPRILLLDEA-TSALDAESERVVQEALDKIMINRTTVIVAHRLSTV  461 (478)
Q Consensus       403 Gq~Qrl~lARall~~~~ililDEp-ts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~  461 (478)
                      .|.+....++..+++++++|+... +.++.... ..+.+.+++  .++.+|++.+..+..
T Consensus        88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~~--~~~pvilV~NK~D~~  144 (456)
T 4dcu_A           88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILYR--TKKPVVLAVNKLDNT  144 (456)
T ss_dssp             CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHTT--CCSCEEEEEECC---
T ss_pred             HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHHH--cCCCEEEEEECccch
Confidence            477777888888889988776544 44455544 456666654  467888888877654

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.81  E-value=0.00058  Score=60.19  Aligned_cols=25  Identities=28%  Similarity=0.179  Sum_probs=21.9

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccCC
Q 048556          290 TTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      ..++|.|++||||||+.+.|...+.
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~   26 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELK   26 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3689999999999999999987653

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.81  E-value=0.00058  Score=69.33  Aligned_cols=45  Identities=16%  Similarity=0.344  Sum_probs=36.2

Q ss_pred             CCCEEEEeCCCCCCC---HHHHHHHHHHHHHhcC-CCeEEEEecCchhh
Q 048556          417 DPRILLLDEATSALD---AESERVVQEALDKIMI-NRTTVIVAHRLSTV  461 (478)
Q Consensus       417 ~~~ililDEpts~LD---~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~  461 (478)
                      .|.++++||+=.-++   +.....+.+.+++.++ +..++++||+++.+
T Consensus       262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~  310 (392)
T 4ag6_A          262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDF  310 (392)
T ss_dssp             TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGG
T ss_pred             ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHh
Confidence            578999999988885   5667777777777664 67899999999765

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.79  E-value=0.0021  Score=58.40  Aligned_cols=43  Identities=21%  Similarity=0.349  Sum_probs=30.3

Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCch
Q 048556          416 KDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLS  459 (478)
Q Consensus       416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~  459 (478)
                      .++.++++||. ..++......+.+.+.....+..+|++|++..
T Consensus       101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~  143 (226)
T 2chg_A          101 APFKIIFLDEA-DALTADAQAALRRTMEMYSKSCRFILSCNYVS  143 (226)
T ss_dssp             CSCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred             cCceEEEEeCh-hhcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence            36889999996 44677777777777766544556667777654

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.77  E-value=0.00051  Score=62.40  Aligned_cols=33  Identities=33%  Similarity=0.472  Sum_probs=26.8

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCee
Q 048556          289 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVN  326 (478)
Q Consensus       289 G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~  326 (478)
                      ..+++|+|++||||||+.+.|...     |-..+|..+
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~   40 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDA   40 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccH
Confidence            357999999999999999999985     656665443

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.76  E-value=0.0013  Score=58.93  Aligned_cols=36  Identities=31%  Similarity=0.553  Sum_probs=27.9

Q ss_pred             EEEEEcCCCCChHHHHHHHh-cc----CCCCcc----EEEECCee
Q 048556          291 TAALVGQSGSGKSTVISLIE-RF----YDPQAG----EVLIDGVN  326 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~-g~----~~~~~G----~i~~~g~~  326 (478)
                      +++|+|++|+|||||++.+. +.    +.|+.|    .+.++|..
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~   66 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS   66 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence            68999999999999996554 44    567767    67777754

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.75  E-value=0.00072  Score=60.66  Aligned_cols=27  Identities=19%  Similarity=0.240  Sum_probs=23.3

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      +|.++.|.|++||||||+.+.|...+.
T Consensus         2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            2 KNKVVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            367899999999999999999987554

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.74  E-value=0.00074  Score=63.46  Aligned_cols=28  Identities=32%  Similarity=0.337  Sum_probs=23.9

Q ss_pred             eecCCCEEEEEcCCCCChHHHHHHHhcc
Q 048556          285 SIPSGTTAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      .-++|.+++|+|++||||||+.+.|++.
T Consensus        12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~   39 (236)
T 1q3t_A           12 DKMKTIQIAIDGPASSGKSTVAKIIAKD   39 (236)
T ss_dssp             --CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3467899999999999999999999863

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.73  E-value=0.00057  Score=69.14  Aligned_cols=58  Identities=21%  Similarity=0.246  Sum_probs=44.4

Q ss_pred             HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEE
Q 048556          407 RIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVI  470 (478)
Q Consensus       407 rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl  470 (478)
                      +.+|+++|..+|+++++||||   |+++..   ..++....+.+++.++|..+....+||++.|
T Consensus       199 ~~~l~~~L~~~pd~illdE~~---d~e~~~---~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l  256 (372)
T 2ewv_A          199 ADALRAALREDPDVIFVGEMR---DLETVE---TALRAAETGHLVFGTLHTNTAIDTIHRIVDI  256 (372)
T ss_dssp             HHHHHHHTTSCCSEEEESCCC---SHHHHH---HHHHHHTTTCEEEECCCCCSHHHHHHHHHHT
T ss_pred             HHHHHHHhhhCcCEEEECCCC---CHHHHH---HHHHHHhcCCEEEEEECcchHHHHHHHHHHh
Confidence            469999999999999999999   766533   3444444578999999998766667776543

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.72  E-value=0.00079  Score=60.34  Aligned_cols=26  Identities=31%  Similarity=0.422  Sum_probs=22.7

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      ++..+.|+|++||||||+.+.|+..+
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999998655

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.71  E-value=0.00023  Score=65.40  Aligned_cols=26  Identities=23%  Similarity=0.440  Sum_probs=23.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCCCC
Q 048556          291 TAALVGQSGSGKSTVISLIERFYDPQ  316 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~~~  316 (478)
                      +++|+|++||||||+++.|...+.+.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~~   27 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRAA   27 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence            68999999999999999999988654

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.70  E-value=0.011  Score=58.41  Aligned_cols=28  Identities=21%  Similarity=0.199  Sum_probs=24.5

Q ss_pred             ecCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          286 IPSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       286 i~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .++..-+.|.||+|+|||||++.++...
T Consensus        42 ~~~~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           42 RTPWRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence            3566789999999999999999999875

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=96.69  E-value=0.0079  Score=60.51  Aligned_cols=29  Identities=28%  Similarity=0.409  Sum_probs=24.9

Q ss_pred             eecCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          285 SIPSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      -+++|+.+.|.||+|+|||||+.-++.-.
T Consensus        70 Gl~~G~li~I~G~pGsGKTtlal~la~~~   98 (366)
T 1xp8_A           70 GIPRGRITEIYGPESGGKTTLALAIVAQA   98 (366)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence            47899999999999999999997776443

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=96.69  E-value=0.0016  Score=60.93  Aligned_cols=50  Identities=18%  Similarity=0.213  Sum_probs=33.1

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecC-----------chhhhhcCEEEEE
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHR-----------LSTVRNADLIAVI  470 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~-----------~~~~~~~d~i~vl  470 (478)
                      +++++++||.-- ++.+.-+ ....+..  .+.+||++.|+           ...+..||+|.-|
T Consensus        89 ~~dvViIDEaQ~-l~~~~ve-~l~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el  149 (223)
T 2b8t_A           89 ETKVIGIDEVQF-FDDRICE-VANILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKL  149 (223)
T ss_dssp             TCCEEEECSGGG-SCTHHHH-HHHHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEEC
T ss_pred             CCCEEEEecCcc-CcHHHHH-HHHHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeec
Confidence            589999999964 6654222 2233333  37899999993           2334568998775

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.68  E-value=0.00066  Score=60.72  Aligned_cols=27  Identities=22%  Similarity=0.151  Sum_probs=23.8

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .++..+.|+|++||||||+.+.|...+
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence            467889999999999999999998544

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.68  E-value=0.00094  Score=60.73  Aligned_cols=26  Identities=27%  Similarity=0.225  Sum_probs=24.4

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +|..++|.|++||||||+.+.|...+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            68899999999999999999999877

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.64  E-value=0.0069  Score=62.01  Aligned_cols=30  Identities=33%  Similarity=0.284  Sum_probs=25.1

Q ss_pred             eeecCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          284 LSIPSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       284 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +.=++...+.++|++||||||+.+.|+.-+
T Consensus       253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             SCCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             cCCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            334567899999999999999999998644

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.64  E-value=0.00083  Score=60.46  Aligned_cols=27  Identities=15%  Similarity=0.244  Sum_probs=23.9

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      ++|..+.|+|++||||||+.+.|...+
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            467889999999999999999998754

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.64  E-value=0.00086  Score=58.89  Aligned_cols=19  Identities=37%  Similarity=0.592  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCChHHHHHHH
Q 048556          291 TAALVGQSGSGKSTVISLI  309 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll  309 (478)
                      +++|+||+||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6899999999999999999

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=96.64  E-value=0.0017  Score=64.10  Aligned_cols=28  Identities=14%  Similarity=0.255  Sum_probs=24.9

Q ss_pred             eecCCCEEEEEcCCCCChHHHHHHHhcc
Q 048556          285 SIPSGTTAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      -+++|..+.|.||+|+|||||+..++.-
T Consensus       119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          119 HRYASGMVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence            5778889999999999999999998753

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=96.62  E-value=0.0035  Score=64.81  Aligned_cols=36  Identities=6%  Similarity=0.072  Sum_probs=28.5

Q ss_pred             ccccceeeecCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          278 IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       278 ~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .|+.+.--+++|+.+.|.|++|+|||||+.-++.-.
T Consensus       186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~  221 (444)
T 3bgw_A          186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM  221 (444)
T ss_dssp             HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence            455544358999999999999999999987766543

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.61  E-value=0.00079  Score=60.20  Aligned_cols=36  Identities=25%  Similarity=0.439  Sum_probs=28.0

Q ss_pred             CEEEEEcCCCCChHHHHHHHhcc----CCCCcc----EEEECCe
Q 048556          290 TTAALVGQSGSGKSTVISLIERF----YDPQAG----EVLIDGV  325 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~----~~~~~G----~i~~~g~  325 (478)
                      -+++++|++|+|||||++.+.+-    +.|+.|    .+.+++.
T Consensus        17 ~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~   60 (181)
T 1fzq_A           17 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGF   60 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTE
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCE
Confidence            47999999999999999999986    355566    4555543

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.60  E-value=0.0011  Score=64.57  Aligned_cols=36  Identities=36%  Similarity=0.378  Sum_probs=28.7

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG  324 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g  324 (478)
                      .+|..+.|.|||||||||+.+.|..-++  .|.+.+++
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~   66 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN   66 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence            3467899999999999999999987653  35667765

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.60  E-value=0.0042  Score=60.40  Aligned_cols=27  Identities=26%  Similarity=0.233  Sum_probs=23.0

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      ++...+.+.||+|+|||+|++.++...
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            344568889999999999999999876

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.58  E-value=0.006  Score=52.52  Aligned_cols=28  Identities=21%  Similarity=0.203  Sum_probs=23.9

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      +.+.-+.|.||+|+|||++++.+.....
T Consensus        25 ~~~~~vll~G~~GtGKt~lA~~i~~~~~   52 (143)
T 3co5_A           25 KRTSPVFLTGEAGSPFETVARYFHKNGT   52 (143)
T ss_dssp             TCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred             CCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence            5567799999999999999999987643

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.57  E-value=0.0011  Score=59.68  Aligned_cols=27  Identities=33%  Similarity=0.390  Sum_probs=24.2

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +++.+++|+|++||||||+.+.|+..+
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            467899999999999999999998654

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=96.56  E-value=0.0016  Score=65.44  Aligned_cols=36  Identities=28%  Similarity=0.513  Sum_probs=31.0

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhc-----------cCCCCccEEEECC
Q 048556          289 GTTAALVGQSGSGKSTVISLIER-----------FYDPQAGEVLIDG  324 (478)
Q Consensus       289 G~~~~ivG~sGsGKSTL~~ll~g-----------~~~~~~G~i~~~g  324 (478)
                      |.+++|||++|+|||||++.|.+           -.+|+.|.+.+++
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~   48 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD   48 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence            56899999999999999999998           4467788888766

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.54  E-value=0.0012  Score=60.30  Aligned_cols=27  Identities=30%  Similarity=0.394  Sum_probs=24.3

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      ++|.+++|.|++||||||+.+.|...+
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~l   34 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEYL   34 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            568899999999999999999998754

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.50  E-value=0.0014  Score=60.09  Aligned_cols=28  Identities=25%  Similarity=0.228  Sum_probs=24.5

Q ss_pred             ecCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          286 IPSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       286 i~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      -++|.+++|.|++||||||+.+.|...+
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l   33 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQSRKLVEAL   33 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4678999999999999999999998654

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.50  E-value=0.0011  Score=61.21  Aligned_cols=24  Identities=42%  Similarity=0.432  Sum_probs=21.8

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhc
Q 048556          288 SGTTAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      ++-+++|+|++||||||+.+.|..
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999987

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.47  E-value=0.00064  Score=61.52  Aligned_cols=29  Identities=24%  Similarity=0.365  Sum_probs=25.5

Q ss_pred             eecCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          285 SIPSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +.+++.+++|+|++||||||+.+.|...+
T Consensus         8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A            8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             HHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            45667899999999999999999998765

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.46  E-value=0.0022  Score=64.15  Aligned_cols=26  Identities=23%  Similarity=0.267  Sum_probs=23.0

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .+..+.|.||+|+|||||++.++...
T Consensus        44 ~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           44 VKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            35689999999999999999998765

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.44  E-value=0.0014  Score=64.37  Aligned_cols=47  Identities=19%  Similarity=0.256  Sum_probs=35.5

Q ss_pred             cccccceeeecCCCEEEEEcCCCCChHHHHHHHhc----cCCCCccEEEECC
Q 048556          277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIER----FYDPQAGEVLIDG  324 (478)
Q Consensus       277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g----~~~~~~G~i~~~g  324 (478)
                      ..+++..+.+ .|.-++|.|+||+||||++..|.+    +...+...|...+
T Consensus       133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~~  183 (314)
T 1ko7_A          133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREIS  183 (314)
T ss_dssp             EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEESS
T ss_pred             eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEcC
Confidence            3566666777 789999999999999999999987    5554555555433

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.43  E-value=0.0014  Score=59.86  Aligned_cols=28  Identities=32%  Similarity=0.534  Sum_probs=24.8

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccCCC
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFYDP  315 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~  315 (478)
                      +|.+++|.|++||||||+.+.|...+..
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            4678999999999999999999987654

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.41  E-value=0.0012  Score=58.75  Aligned_cols=23  Identities=30%  Similarity=0.456  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .++|+|++||||||+.+.|+..+
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            68999999999999999998765

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.37  E-value=0.0016  Score=57.64  Aligned_cols=22  Identities=32%  Similarity=0.282  Sum_probs=20.3

Q ss_pred             CEEEEEcCCCCChHHHHHHHhc
Q 048556          290 TTAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      ..+.|.|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            3689999999999999999987

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.32  E-value=0.00014  Score=73.35  Aligned_cols=71  Identities=14%  Similarity=0.024  Sum_probs=50.4

Q ss_pred             CCChHHHHHHHHHHHHc-CCCCEEEEeC---CC------CCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhhcCE
Q 048556          399 QLSGGQKQRIAIARAIL-KDPRILLLDE---AT------SALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRNADL  466 (478)
Q Consensus       399 ~LSgGq~Qrl~lARall-~~~~ililDE---pt------s~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~  466 (478)
                      .+|+|++|+..+++++. .+|++++|||   |+      +++|+..+..+.+.++++.+  +.++++++|.-...+.+|+
T Consensus       258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~  337 (365)
T 1lw7_A          258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQV  337 (365)
T ss_dssp             HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence            45677788888888875 5999999999   65      58999999999999977643  7899999986433333554


Q ss_pred             EEE
Q 048556          467 IAV  469 (478)
Q Consensus       467 i~v  469 (478)
                      +.+
T Consensus       338 i~~  340 (365)
T 1lw7_A          338 KAV  340 (365)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.32  E-value=0.0016  Score=62.02  Aligned_cols=23  Identities=22%  Similarity=0.218  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .++|+||+|||||||.+.|++.+
T Consensus         3 li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhcC
Confidence            68999999999999999998764

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=96.32  E-value=0.0065  Score=60.44  Aligned_cols=42  Identities=14%  Similarity=0.167  Sum_probs=30.1

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCch
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLS  459 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~  459 (478)
                      ++.++++||+- .++......+.+.+.+...+..+|++|++..
T Consensus       119 ~~~vliiDe~~-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~  160 (373)
T 1jr3_A          119 RFKVYLIDEVH-MLSRHSFNALLKTLEEPPEHVKFLLATTDPQ  160 (373)
T ss_dssp             SSEEEEEECGG-GSCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred             CeEEEEEECcc-hhcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence            57899999964 4677777778777765444556677787664

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=96.31  E-value=0.014  Score=58.28  Aligned_cols=27  Identities=22%  Similarity=0.270  Sum_probs=23.6

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +++.-+.|.||+|+|||||++.++...
T Consensus        82 ~~~~~iLL~GppGtGKT~la~ala~~~  108 (355)
T 2qp9_X           82 KPTSGILLYGPPGTGKSYLAKAVATEA  108 (355)
T ss_dssp             CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence            455679999999999999999999865

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.30  E-value=0.0015  Score=58.16  Aligned_cols=27  Identities=15%  Similarity=0.148  Sum_probs=18.7

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .++..+.|.|++||||||+.+.|...+
T Consensus         3 ~~~~~I~l~G~~GsGKST~a~~La~~l   29 (183)
T 2vli_A            3 MRSPIIWINGPFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             --CCEEEEECCC----CHHHHHHHHHS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            357789999999999999999998654

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.29  E-value=0.0018  Score=58.18  Aligned_cols=25  Identities=28%  Similarity=0.377  Sum_probs=22.0

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhccC
Q 048556          289 GTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       289 G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +..++|.|++||||||+.+.|+..+
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999997654

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.27  E-value=0.0015  Score=58.40  Aligned_cols=35  Identities=26%  Similarity=0.250  Sum_probs=26.9

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccCCCCc---cEEEECC
Q 048556          290 TTAALVGQSGSGKSTVISLIERFYDPQA---GEVLIDG  324 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~~~~~---G~i~~~g  324 (478)
                      ..++|+|++|||||||+..|.+.+....   |.|..+.
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~   42 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG   42 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence            4799999999999999999998865432   4444443

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.26  E-value=0.0023  Score=59.23  Aligned_cols=27  Identities=22%  Similarity=0.443  Sum_probs=23.7

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      ++|-.+.|+|++||||||+.+.|+..+
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            467889999999999999999998765

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.26  E-value=0.0049  Score=54.11  Aligned_cols=26  Identities=19%  Similarity=0.379  Sum_probs=22.6

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhcc
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      ++.-+++++|++|+|||||++.+.+-
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            35568999999999999999999873

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.25  E-value=0.002  Score=57.77  Aligned_cols=24  Identities=33%  Similarity=0.580  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCC
Q 048556          291 TAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      ++.|.|++||||||+.+.|...+.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999988764

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=96.18  E-value=0.0022  Score=64.63  Aligned_cols=31  Identities=26%  Similarity=0.504  Sum_probs=26.1

Q ss_pred             cccceeeecCCCEEEEEcCCCCChHHHHHHHh
Q 048556          279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIE  310 (478)
Q Consensus       279 l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~  310 (478)
                      +++..+++.+| ..+|+|||||||||++.+|.
T Consensus        16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred             ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence            35667777764 89999999999999999986

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.15  E-value=0.0031  Score=57.16  Aligned_cols=22  Identities=41%  Similarity=0.588  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.+.
T Consensus        25 ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            7899999999999999999764

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.15  E-value=0.0027  Score=55.95  Aligned_cols=25  Identities=28%  Similarity=0.308  Sum_probs=21.8

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhccC
Q 048556          289 GTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       289 G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      -+.++|.|++||||||+.+.|+..+
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~l   31 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLAL   31 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHh
Confidence            4789999999999999999998654

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.13  E-value=0.003  Score=57.49  Aligned_cols=26  Identities=27%  Similarity=0.340  Sum_probs=22.8

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .+.+++|+|++||||||+.+.|...+
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            35689999999999999999998755

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.12  E-value=0.0027  Score=59.07  Aligned_cols=27  Identities=37%  Similarity=0.491  Sum_probs=22.7

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .++..++|.|++||||||+.+.|+..+
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            456789999999999999999998654

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.11  E-value=0.0027  Score=58.41  Aligned_cols=23  Identities=35%  Similarity=0.489  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +++|.||+||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999997654

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.10  E-value=0.0026  Score=57.89  Aligned_cols=23  Identities=30%  Similarity=0.366  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +++|.|++||||||+.+.|++.+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            79999999999999999998854

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.09  E-value=0.0026  Score=56.93  Aligned_cols=24  Identities=42%  Similarity=0.531  Sum_probs=21.4

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccC
Q 048556          290 TTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .+++|+|++||||||+.+.|+..+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKAL   26 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHc
Confidence            468999999999999999998754

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.08  E-value=0.0019  Score=62.86  Aligned_cols=26  Identities=27%  Similarity=0.507  Sum_probs=19.9

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      ++-+++|.||+||||||+.+.|...+
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~l   29 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIF   29 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999998754

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.07  E-value=0.0026  Score=56.89  Aligned_cols=25  Identities=32%  Similarity=0.410  Sum_probs=22.0

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhccC
Q 048556          289 GTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       289 G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +.+++|+|++||||||+.+.|...+
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4589999999999999999998654

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.05  E-value=0.0028  Score=58.66  Aligned_cols=27  Identities=30%  Similarity=0.410  Sum_probs=23.3

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      .+..+.|+|++||||||+.+.|+..+.
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~   30 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQ   30 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            456899999999999999999987653

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.04  E-value=0.0029  Score=55.74  Aligned_cols=24  Identities=29%  Similarity=0.367  Sum_probs=21.3

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccC
Q 048556          290 TTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .+++|+|++||||||+.+.|...+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999998754

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.04  E-value=0.012  Score=65.06  Aligned_cols=24  Identities=17%  Similarity=0.303  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCC
Q 048556          291 TAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      .+.++||+|+|||++++.++....
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~  546 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIF  546 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            589999999999999999998863

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.03  E-value=0.0055  Score=53.21  Aligned_cols=21  Identities=29%  Similarity=0.517  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 048556          291 TAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      +++++|++|+|||||++.+.+
T Consensus         5 ~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            689999999999999999987

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.03  E-value=0.0031  Score=57.37  Aligned_cols=26  Identities=23%  Similarity=0.356  Sum_probs=22.5

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +..+++|.|++||||||+.+.|+..+
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            34579999999999999999998654

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.00  E-value=0.0032  Score=57.91  Aligned_cols=23  Identities=35%  Similarity=0.433  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .++|+||+||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            48899999999999999997655

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=95.99  E-value=0.0033  Score=55.15  Aligned_cols=23  Identities=48%  Similarity=0.453  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +++|.|++||||||+.+.|...+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999998754

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=95.98  E-value=0.0033  Score=56.33  Aligned_cols=24  Identities=29%  Similarity=0.418  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCC
Q 048556          291 TAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      +++|.|++||||||+.+.|...+.
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~   25 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLK   25 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            589999999999999999987653

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=95.98  E-value=0.0034  Score=57.30  Aligned_cols=23  Identities=30%  Similarity=0.524  Sum_probs=21.1

Q ss_pred             CEEEEEcCCCCChHHHHHHHhcc
Q 048556          290 TTAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      ..++|+|++||||||+.+.|...
T Consensus        13 ~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            47899999999999999999875

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=95.96  E-value=0.017  Score=60.44  Aligned_cols=28  Identities=18%  Similarity=0.291  Sum_probs=24.5

Q ss_pred             ecCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          286 IPSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       286 i~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +++..-+.|.||+|+|||++++.++...
T Consensus       235 ~~~~~~vLL~GppGtGKT~lAraia~~~  262 (489)
T 3hu3_A          235 VKPPRGILLYGPPGTGKTLIARAVANET  262 (489)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence            5667789999999999999999998754

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=95.95  E-value=0.0034  Score=54.46  Aligned_cols=23  Identities=26%  Similarity=0.436  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +++++|++|+|||||++.+.+..
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~~   26 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGVE   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC-
T ss_pred             EEEEECCCCCCHHHHHHHHcCcc
Confidence            68999999999999999998754

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=95.93  E-value=0.0033  Score=60.31  Aligned_cols=24  Identities=33%  Similarity=0.555  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCC
Q 048556          291 TAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      +++++|++|||||||++.+.|...
T Consensus         5 ~i~lvG~~g~GKTTL~n~l~g~~~   28 (271)
T 3k53_A            5 TVALVGNPNVGKTTIFNALTGLRQ   28 (271)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            689999999999999999999753

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=95.93  E-value=0.025  Score=55.06  Aligned_cols=26  Identities=27%  Similarity=0.331  Sum_probs=22.6

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      ++..+.|.||+|+||||+++.+....
T Consensus        37 ~~~~vll~G~~GtGKT~la~~i~~~~   62 (324)
T 1hqc_A           37 PLEHLLLFGPPGLGKTTLAHVIAHEL   62 (324)
T ss_dssp             CCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHh
Confidence            45679999999999999999998754

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=95.92  E-value=0.0036  Score=54.23  Aligned_cols=22  Identities=27%  Similarity=0.347  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.+-
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            6899999999999999999864

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.90  E-value=0.032  Score=54.80  Aligned_cols=25  Identities=24%  Similarity=0.375  Sum_probs=22.0

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccCC
Q 048556          290 TTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      ..+.|.||+|+|||||++.++....
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~~~   80 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYEMS   80 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHhC
Confidence            4689999999999999999987653

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.87  E-value=0.026  Score=55.10  Aligned_cols=43  Identities=21%  Similarity=0.367  Sum_probs=31.0

Q ss_pred             CCCEEEEeCCCCCCC-HHHHHHHHHHHHHhcCCCeEEEEecCchh
Q 048556          417 DPRILLLDEATSALD-AESERVVQEALDKIMINRTTVIVAHRLST  460 (478)
Q Consensus       417 ~~~ililDEpts~LD-~~~~~~i~~~l~~~~~~~t~i~itH~~~~  460 (478)
                      +++++++||.-. +. ......+.+.+.....+..+|++|++...
T Consensus       105 ~~~vliiDEi~~-l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~  148 (324)
T 3u61_B          105 RQKVIVIDEFDR-SGLAESQRHLRSFMEAYSSNCSIIITANNIDG  148 (324)
T ss_dssp             CEEEEEEESCCC-GGGHHHHHHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred             CCeEEEEECCcc-cCcHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence            789999999853 34 55666777777665556678888887653

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=95.85  E-value=0.0043  Score=54.25  Aligned_cols=23  Identities=30%  Similarity=0.498  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +++++|++|+|||||++.+.+-.
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCccHHHHHHHHhcCC
Confidence            68999999999999999998764

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=95.85  E-value=0.004  Score=59.03  Aligned_cols=24  Identities=29%  Similarity=0.379  Sum_probs=21.2

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccC
Q 048556          290 TTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      -+++|.|++||||||+.+.|...+
T Consensus        23 ~iI~I~G~~GSGKST~a~~L~~~l   46 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKIVQLL   46 (252)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHh
Confidence            379999999999999999997743

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=95.85  E-value=0.019  Score=68.04  Aligned_cols=35  Identities=20%  Similarity=0.320  Sum_probs=29.7

Q ss_pred             ecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEE
Q 048556          286 IPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV  320 (478)
Q Consensus       286 i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i  320 (478)
                      +++|+.+.|.||+|+|||||+..++.......|.+
T Consensus       729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~V  763 (1706)
T 3cmw_A          729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTC  763 (1706)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCe
Confidence            89999999999999999999999987765544443

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=95.84  E-value=0.004  Score=55.74  Aligned_cols=27  Identities=19%  Similarity=0.314  Sum_probs=23.0

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      +.-.++++|++|+|||||++.+.+-..
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~~~   73 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTDSV   73 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            334899999999999999999988653

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=95.84  E-value=0.0041  Score=53.66  Aligned_cols=22  Identities=23%  Similarity=0.329  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999998754

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=95.83  E-value=0.036  Score=57.13  Aligned_cols=28  Identities=21%  Similarity=0.199  Sum_probs=24.7

Q ss_pred             ecCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          286 IPSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       286 i~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      ..+..-+.|.||+|+|||||++.++...
T Consensus       164 ~~~~~~vLL~GppGtGKT~lA~aia~~~  191 (444)
T 2zan_A          164 RTPWRGILLFGPPGTGKSYLAKAVATEA  191 (444)
T ss_dssp             GCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence            3566789999999999999999999876

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=95.83  E-value=0.0041  Score=58.74  Aligned_cols=27  Identities=22%  Similarity=0.261  Sum_probs=23.5

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +++-.++|.||+||||||+.+.|+..+
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            356789999999999999999998654

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=95.83  E-value=0.0049  Score=58.79  Aligned_cols=23  Identities=26%  Similarity=0.462  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +++++|++|||||||++.+.|..
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~~   25 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNAN   25 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            68999999999999999999874

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=95.82  E-value=0.0046  Score=53.79  Aligned_cols=23  Identities=39%  Similarity=0.538  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +++++|++|+|||||++.+.+..
T Consensus         4 ki~ivG~~~~GKSsli~~l~~~~   26 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGGLQ   26 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHHhcc
Confidence            58999999999999999997643

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=95.81  E-value=0.0041  Score=53.51  Aligned_cols=22  Identities=27%  Similarity=0.388  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999865

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=95.79  E-value=0.0039  Score=62.81  Aligned_cols=22  Identities=32%  Similarity=0.521  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++|||++|+|||||++.|.+.
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999986

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=95.78  E-value=0.0045  Score=53.32  Aligned_cols=23  Identities=22%  Similarity=0.392  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +++++|++|+|||||++.+.+-.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998754

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=95.78  E-value=0.0045  Score=53.44  Aligned_cols=22  Identities=27%  Similarity=0.323  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      .++++|++|+|||||++.+.+-
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999999864

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=95.75  E-value=0.0044  Score=53.78  Aligned_cols=23  Identities=30%  Similarity=0.382  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .++++|++|+|||||++.+.+-.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVEDK   27 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            58999999999999999998653

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=95.73  E-value=0.0046  Score=59.01  Aligned_cols=26  Identities=27%  Similarity=0.308  Sum_probs=22.9

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      ++..+.|+|++||||||+.+.|...+
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L   28 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKIL   28 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            46689999999999999999998753

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=95.73  E-value=0.0048  Score=53.57  Aligned_cols=23  Identities=26%  Similarity=0.404  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .++++|++|+|||||++.+.+-.
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999998764

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.73  E-value=0.0048  Score=53.44  Aligned_cols=23  Identities=22%  Similarity=0.322  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .++++|++|+|||||++.+.+-.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999987643

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=95.72  E-value=0.0049  Score=53.31  Aligned_cols=22  Identities=23%  Similarity=0.335  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.+-
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=95.71  E-value=0.0048  Score=53.61  Aligned_cols=22  Identities=18%  Similarity=0.286  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.+-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            6899999999999999999865

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=95.70  E-value=0.0051  Score=53.99  Aligned_cols=22  Identities=27%  Similarity=0.460  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      .++++|++|+|||||++.+.+-
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999875

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=95.70  E-value=0.005  Score=54.12  Aligned_cols=23  Identities=22%  Similarity=0.365  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +++++|++|+|||||++.+.+-.
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            68999999999999999887643

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=95.69  E-value=0.0052  Score=56.76  Aligned_cols=26  Identities=35%  Similarity=0.565  Sum_probs=23.1

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +|-.+.|.|++||||||+.+.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            45689999999999999999998765

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=95.68  E-value=0.005  Score=55.09  Aligned_cols=25  Identities=32%  Similarity=0.335  Sum_probs=22.0

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhcc
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +--.++++|++|+|||||++.+.+-
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3457999999999999999999875

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.68  E-value=0.0098  Score=54.15  Aligned_cols=22  Identities=23%  Similarity=0.471  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.+-
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            6899999999999999988754

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=95.67  E-value=0.0051  Score=53.92  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      .++++|++|+|||||++.+.+-
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.66  E-value=0.015  Score=56.32  Aligned_cols=42  Identities=14%  Similarity=0.316  Sum_probs=28.6

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCch
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLS  459 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~  459 (478)
                      ++.++++||+- .++......+.+.+.+...+..+|++|++..
T Consensus       107 ~~~viiiDe~~-~l~~~~~~~L~~~le~~~~~~~~il~~~~~~  148 (323)
T 1sxj_B          107 KHKIVILDEAD-SMTAGAQQALRRTMELYSNSTRFAFACNQSN  148 (323)
T ss_dssp             CCEEEEEESGG-GSCHHHHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred             CceEEEEECcc-cCCHHHHHHHHHHHhccCCCceEEEEeCChh
Confidence            47899999963 3555666667777766444556677777754

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=95.64  E-value=0.0053  Score=54.68  Aligned_cols=23  Identities=30%  Similarity=0.424  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +++++|++|+|||||++.+.+-.
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCc
Confidence            79999999999999999998764

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=95.64  E-value=0.0051  Score=53.99  Aligned_cols=22  Identities=27%  Similarity=0.353  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      .++++|++|+|||||++.+.+-
T Consensus        11 ~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999999875

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=95.63  E-value=0.0054  Score=59.07  Aligned_cols=23  Identities=35%  Similarity=0.592  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +++++|++|+|||||++.+.|..
T Consensus         5 kI~lvG~~nvGKSTL~n~L~g~~   27 (272)
T 3b1v_A            5 EIALIGNPNSGKTSLFNLITGHN   27 (272)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            68999999999999999999964

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=95.63  E-value=0.0051  Score=59.52  Aligned_cols=23  Identities=39%  Similarity=0.452  Sum_probs=20.8

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhc
Q 048556          289 GTTAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       289 G~~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      ..+++|+|++||||||+.+.|..
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999984

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=95.62  E-value=0.0057  Score=54.51  Aligned_cols=25  Identities=24%  Similarity=0.165  Sum_probs=22.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCCC
Q 048556          291 TAALVGQSGSGKSTVISLIERFYDP  315 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~~  315 (478)
                      +++++|++|+|||||++.+.|...+
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~~~~   40 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSKVPE   40 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred             EEEEECCCCCCHHHHHHHHHhhccc
Confidence            6899999999999999999987643

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.61  E-value=0.0062  Score=60.42  Aligned_cols=28  Identities=21%  Similarity=0.361  Sum_probs=24.4

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      +++..+.|+||+|||||||...|+.-+.
T Consensus        38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~   65 (339)
T 3a8t_A           38 RKEKLLVLMGATGTGKSRLSIDLAAHFP   65 (339)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred             cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence            3566899999999999999999998763

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=95.60  E-value=0.0053  Score=58.96  Aligned_cols=23  Identities=43%  Similarity=0.459  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .++++|++|+|||||++.|.+--
T Consensus        10 ~I~vvG~~g~GKSTLin~L~~~~   32 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLFLTD   32 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHSSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999987653

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=95.60  E-value=0.0058  Score=52.92  Aligned_cols=22  Identities=27%  Similarity=0.388  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.+-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999999863

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=95.59  E-value=0.0085  Score=56.00  Aligned_cols=27  Identities=19%  Similarity=0.176  Sum_probs=19.6

Q ss_pred             cCCCE-EEEEcCCCCChHHHHHHHhccC
Q 048556          287 PSGTT-AALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       287 ~~G~~-~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +.|+. +.+.|+.|+||||++--++...
T Consensus         3 ~~g~l~I~~~~kgGvGKTt~a~~la~~l   30 (228)
T 2r8r_A            3 ARGRLKVFLGAAPGVGKTYAMLQAAHAQ   30 (228)
T ss_dssp             CCCCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHHHH
Confidence            35664 7889999999999955554443

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=95.56  E-value=0.0059  Score=54.18  Aligned_cols=23  Identities=35%  Similarity=0.367  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +++++|++|+|||||++.+.+-.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGKK   25 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCcC
Confidence            58999999999999999998753

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=95.55  E-value=0.03  Score=54.68  Aligned_cols=29  Identities=31%  Similarity=0.452  Sum_probs=25.0

Q ss_pred             ecCCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556          286 IPSGTTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       286 i~~G~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      .+.+..+.|.||+|+|||++++.+.....
T Consensus        22 a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~   50 (304)
T 1ojl_A           22 APSDATVLIHGDSGTGKELVARALHACSA   50 (304)
T ss_dssp             CSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred             hCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence            35677899999999999999999988654

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=95.54  E-value=0.054  Score=54.61  Aligned_cols=27  Identities=19%  Similarity=0.288  Sum_probs=23.7

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .++..+.|.||+|+|||+|++.++...
T Consensus       146 ~~~~~vLL~GppGtGKT~la~aia~~~  172 (389)
T 3vfd_A          146 APARGLLLFGPPGNGKTMLAKAVAAES  172 (389)
T ss_dssp             CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence            356789999999999999999998763

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=95.53  E-value=0.0061  Score=54.45  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +++++|++|+|||||++.+.+-.
T Consensus         9 ki~v~G~~~~GKSsli~~l~~~~   31 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTKDT   31 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            68999999999999999998863

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=95.53  E-value=0.0062  Score=54.50  Aligned_cols=22  Identities=36%  Similarity=0.643  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.+-
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            6899999999999999999874

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=95.52  E-value=0.0063  Score=53.89  Aligned_cols=23  Identities=26%  Similarity=0.341  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .++++|++|+|||||++.+.+-.
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            68999999999999999998643

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=95.52  E-value=0.01  Score=52.80  Aligned_cols=22  Identities=23%  Similarity=0.466  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.+-
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999865

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=95.51  E-value=0.0063  Score=53.98  Aligned_cols=22  Identities=27%  Similarity=0.330  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.+-
T Consensus        13 ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999864

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=95.49  E-value=0.0067  Score=52.43  Aligned_cols=21  Identities=24%  Similarity=0.455  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 048556          291 TAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      +++++|++|+|||||++.+.+
T Consensus         2 ki~~~G~~~~GKssl~~~l~~   22 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKL   22 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999999975

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=95.49  E-value=0.0071  Score=53.02  Aligned_cols=22  Identities=18%  Similarity=0.398  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.+-
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            6899999999999999999864

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=95.48  E-value=0.0068  Score=52.71  Aligned_cols=24  Identities=21%  Similarity=0.378  Sum_probs=20.8

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhcc
Q 048556          289 GTTAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       289 G~~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      .-+++++|++|+|||||++.+.+-
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            347999999999999999999753

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.47  E-value=0.0054  Score=54.17  Aligned_cols=24  Identities=21%  Similarity=0.436  Sum_probs=21.2

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhc
Q 048556          288 SGTTAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      +.-+++++|++|+|||||++.+.+
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            445899999999999999999984

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=95.47  E-value=0.0065  Score=53.19  Aligned_cols=22  Identities=18%  Similarity=0.324  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      .++++|++|+|||||++.+.+-
T Consensus        16 ~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999999853

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=95.47  E-value=0.0066  Score=55.83  Aligned_cols=23  Identities=30%  Similarity=0.408  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .++|.|++||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998755

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.44  E-value=0.0087  Score=54.84  Aligned_cols=35  Identities=26%  Similarity=0.312  Sum_probs=27.3

Q ss_pred             ccccceeeecCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          278 IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       278 ~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .++..-+.+ .|..+.|+||||||||||...|+...
T Consensus        24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence            455544444 58889999999999999999987643

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.42  E-value=0.0072  Score=53.10  Aligned_cols=22  Identities=32%  Similarity=0.472  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.+-
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            6899999999999999999764

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=95.41  E-value=0.0087  Score=55.89  Aligned_cols=26  Identities=31%  Similarity=0.584  Sum_probs=23.0

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .+..+.|.|++||||||+.+.|+..+
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45689999999999999999998765

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=95.41  E-value=0.0073  Score=56.09  Aligned_cols=23  Identities=35%  Similarity=0.546  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .++|.|++||||||+.+.|...+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999998655

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.39  E-value=0.0065  Score=55.89  Aligned_cols=25  Identities=28%  Similarity=0.347  Sum_probs=22.3

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhccC
Q 048556          289 GTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       289 G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +.+++|+|++||||||+.+.|...+
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4579999999999999999998764

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=95.36  E-value=0.0077  Score=52.68  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +++++|++|+|||||++.+.+-.
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            68999999999999999998653

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=95.36  E-value=0.0077  Score=53.09  Aligned_cols=22  Identities=27%  Similarity=0.323  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            6899999999999999999864

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=95.34  E-value=0.0078  Score=58.83  Aligned_cols=22  Identities=32%  Similarity=0.463  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++|+|++|+|||||++.+.|-
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999999985

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=95.34  E-value=0.0078  Score=52.92  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +++++|++|+|||||++.+.+-.
T Consensus        14 ki~v~G~~~~GKSsli~~l~~~~   36 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVKDQ   36 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            68999999999999999998653

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=95.34  E-value=0.0079  Score=53.58  Aligned_cols=22  Identities=27%  Similarity=0.388  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.+-
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            6899999999999999999865

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=95.32  E-value=0.0097  Score=52.47  Aligned_cols=28  Identities=18%  Similarity=0.392  Sum_probs=24.0

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      +.+..+.|+||+|+|||||++.++..+.
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~   68 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            4457899999999999999999988754

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=95.31  E-value=0.01  Score=55.17  Aligned_cols=29  Identities=21%  Similarity=0.362  Sum_probs=26.5

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccCCC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFYDP  315 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~  315 (478)
                      ++|..+.+-|++||||||+.+.|...+..
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            46999999999999999999999988765

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=95.30  E-value=0.0079  Score=53.22  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.+-
T Consensus        12 ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999999764

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=95.28  E-value=0.0081  Score=56.91  Aligned_cols=23  Identities=39%  Similarity=0.453  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .++|+|++|+|||||++.+.|-.
T Consensus        24 ~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           24 RIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998754

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=95.27  E-value=0.014  Score=51.30  Aligned_cols=21  Identities=24%  Similarity=0.338  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 048556          291 TAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      +++++|++|+|||||++.+.+
T Consensus         8 ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            689999999999999999983

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=95.25  E-value=0.008  Score=55.94  Aligned_cols=29  Identities=21%  Similarity=0.365  Sum_probs=25.4

Q ss_pred             eecCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          285 SIPSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +.++..++.|+||+||||+|..+.|+.-|
T Consensus        25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            45677889999999999999999998766

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.25  E-value=0.0085  Score=59.53  Aligned_cols=25  Identities=20%  Similarity=0.388  Sum_probs=22.2

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccCC
Q 048556          290 TTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      ..++|+||||||||||.+.|+..+.
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            3799999999999999999987664

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=95.25  E-value=0.0045  Score=64.05  Aligned_cols=43  Identities=19%  Similarity=0.306  Sum_probs=33.2

Q ss_pred             ccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEE
Q 048556          278 IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL  321 (478)
Q Consensus       278 ~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~  321 (478)
                      +++.+ +.+-+|++++|+|+||+|||||++.|.+......|.+.
T Consensus       141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~  183 (473)
T 1sky_E          141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS  183 (473)
T ss_dssp             HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred             HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence            44444 56778999999999999999999999877654344443

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=95.25  E-value=0.0094  Score=52.85  Aligned_cols=26  Identities=15%  Similarity=0.270  Sum_probs=22.0

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhcc
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      ++.-+++++|++|+|||||++.+.+-
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence            34457999999999999999999864

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=95.25  E-value=0.0087  Score=53.37  Aligned_cols=23  Identities=22%  Similarity=0.248  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +++++|++|+|||||++.+.+-.
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            68999999999999999998653

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=95.21  E-value=0.009  Score=53.81  Aligned_cols=22  Identities=27%  Similarity=0.323  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      .++++|++|+|||||++.+.+-
T Consensus        16 ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999999754

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=95.20  E-value=0.009  Score=53.93  Aligned_cols=23  Identities=22%  Similarity=0.407  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +++++|++|+|||||++.+.+-.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            68999999999999999998753

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=95.20  E-value=0.0091  Score=58.47  Aligned_cols=23  Identities=30%  Similarity=0.398  Sum_probs=21.3

Q ss_pred             CEEEEEcCCCCChHHHHHHHhcc
Q 048556          290 TTAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      -+|+|+|++|+|||||++.|.|-
T Consensus        11 g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A           11 GYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            37999999999999999999985

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=95.20  E-value=0.0087  Score=53.66  Aligned_cols=22  Identities=27%  Similarity=0.528  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.+-
T Consensus        25 ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            6899999999999999999764

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.19  E-value=0.0091  Score=54.57  Aligned_cols=24  Identities=21%  Similarity=0.433  Sum_probs=21.5

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccC
Q 048556          290 TTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      -.++++|++|+|||||++.+.+-.
T Consensus        13 ~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           13 PSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            378999999999999999998764

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=95.17  E-value=0.0092  Score=55.91  Aligned_cols=28  Identities=21%  Similarity=0.322  Sum_probs=22.6

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      .+|..+.|.|++||||||+.+.|...+.
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5799999999999999999999987764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=95.15  E-value=0.012  Score=51.85  Aligned_cols=22  Identities=27%  Similarity=0.356  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6799999999999999999854

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=95.15  E-value=0.01  Score=53.47  Aligned_cols=23  Identities=17%  Similarity=0.236  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +++++|++|+|||||++.+.+-.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999998753

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=95.15  E-value=0.011  Score=51.87  Aligned_cols=25  Identities=16%  Similarity=0.157  Sum_probs=21.5

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhcc
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +--+++++|++|+|||||++.+.+-
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            3457999999999999999999864

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=95.15  E-value=0.01  Score=53.30  Aligned_cols=23  Identities=17%  Similarity=0.388  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .++++|++|+|||||++.+.+-.
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~~~   50 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTDDT   50 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998643

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.15  E-value=0.0092  Score=53.41  Aligned_cols=21  Identities=24%  Similarity=0.480  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 048556          291 TAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      .++++|++|+|||||++.+.+
T Consensus        10 ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A           10 RVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHc
Confidence            789999999999999999987

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.14  E-value=0.0084  Score=57.10  Aligned_cols=29  Identities=17%  Similarity=0.352  Sum_probs=24.7

Q ss_pred             ecCCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556          286 IPSGTTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       286 i~~G~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      .+++..++|.|+.||||||+++.|...+.
T Consensus        21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           21 GTRIKKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            35778999999999999999999998763

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=95.13  E-value=0.0098  Score=53.03  Aligned_cols=22  Identities=18%  Similarity=0.193  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.+-
T Consensus        22 ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999753

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=95.12  E-value=0.01  Score=52.36  Aligned_cols=21  Identities=19%  Similarity=0.379  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 048556          291 TAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      .++++|++|+|||||++.+.+
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            689999999999999988874

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.12  E-value=0.01  Score=55.01  Aligned_cols=29  Identities=28%  Similarity=0.334  Sum_probs=25.5

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccCCC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFYDP  315 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~  315 (478)
                      -+|.++.|.|++||||||+++.|...+..
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~   32 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE   32 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            36889999999999999999999887764

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.11  E-value=0.0097  Score=58.40  Aligned_cols=25  Identities=20%  Similarity=0.372  Sum_probs=22.0

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhccC
Q 048556          289 GTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       289 G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +..++|+||||||||||...|+.-+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC
Confidence            4578999999999999999998765

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=95.11  E-value=0.01  Score=53.51  Aligned_cols=22  Identities=32%  Similarity=0.614  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.|.
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6999999999999999999863

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=95.11  E-value=0.0094  Score=53.21  Aligned_cols=24  Identities=25%  Similarity=0.357  Sum_probs=21.4

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccC
Q 048556          290 TTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      -+++++|++|+|||||++.+.+-.
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           22 VHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            368999999999999999998764

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=95.10  E-value=0.0099  Score=57.17  Aligned_cols=23  Identities=30%  Similarity=0.473  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +++++|++|||||||++.+.|-.
T Consensus         5 ~I~lvG~~n~GKSTLin~l~g~~   27 (274)
T 3i8s_A            5 TIGLIGNPNSGKTTLFNQLTGSR   27 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999864

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=95.09  E-value=0.011  Score=54.78  Aligned_cols=23  Identities=30%  Similarity=0.518  Sum_probs=20.9

Q ss_pred             CEEEEEcCCCCChHHHHHHHhcc
Q 048556          290 TTAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      -+++++|++|+|||||++.+.+-
T Consensus        30 ~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           30 KTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            37899999999999999999875

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=95.09  E-value=0.19  Score=52.36  Aligned_cols=36  Identities=19%  Similarity=0.175  Sum_probs=27.9

Q ss_pred             cccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556          279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       279 l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      |+.+---+++|+.+.|.|++|+|||||+.-++.-..
T Consensus       232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a  267 (503)
T 1q57_A          232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWG  267 (503)
T ss_dssp             HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHT
T ss_pred             hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHH
Confidence            444432489999999999999999999877665443

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.08  E-value=0.012  Score=55.51  Aligned_cols=28  Identities=25%  Similarity=0.395  Sum_probs=25.3

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccCCC
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFYDP  315 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~  315 (478)
                      +|.+++|.|++||||||+++.|...+..
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~   53 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ   53 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            5899999999999999999999887754

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.08  E-value=0.01  Score=53.13  Aligned_cols=23  Identities=17%  Similarity=0.231  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +++++|++|+|||||++.+.+-.
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhcCC
Confidence            68999999999999999998754

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=95.08  E-value=0.013  Score=52.20  Aligned_cols=23  Identities=30%  Similarity=0.381  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +++++|++|+|||||++.+.+-.
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999998743

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=95.07  E-value=0.01  Score=53.68  Aligned_cols=24  Identities=13%  Similarity=0.141  Sum_probs=21.4

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccC
Q 048556          290 TTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      =+++++|++|+|||||++.+.+-.
T Consensus        25 ~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           25 RKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC
Confidence            478999999999999999998754

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=95.07  E-value=0.03  Score=62.69  Aligned_cols=35  Identities=17%  Similarity=0.224  Sum_probs=27.2

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccCCCCcc-EEEECC
Q 048556          290 TTAALVGQSGSGKSTVISLIERFYDPQAG-EVLIDG  324 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~~~~~G-~i~~~g  324 (478)
                      ..+.|+||+|+|||++++.|.......++ -|.+|.
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~  624 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM  624 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEec
Confidence            47899999999999999999998755433 344543

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=95.06  E-value=0.02  Score=68.76  Aligned_cols=37  Identities=19%  Similarity=0.206  Sum_probs=32.1

Q ss_pred             Ccccccce--eeecCCCEEEEEcCCCCChHHHHHHHhcc
Q 048556          276 EQIFNGFS--LSIPSGTTAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       276 ~~~l~~is--~~i~~G~~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      .+.|+++.  .-+++|+.+.+.||+|||||||...+.--
T Consensus      1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~e 1104 (2050)
T 3cmu_A         1066 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 1104 (2050)
T ss_dssp             CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            46788876  57999999999999999999999988743

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=95.06  E-value=0.016  Score=52.77  Aligned_cols=22  Identities=23%  Similarity=0.466  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.+-
T Consensus        30 ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           30 KIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999875

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=95.03  E-value=0.011  Score=52.86  Aligned_cols=22  Identities=23%  Similarity=0.415  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.+-
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            6899999999999999999864

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=95.02  E-value=0.011  Score=53.36  Aligned_cols=22  Identities=23%  Similarity=0.416  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.+-
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            6899999999999999999864

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=95.02  E-value=0.011  Score=56.27  Aligned_cols=23  Identities=22%  Similarity=0.341  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +++++|++|+|||||++.+.|-.
T Consensus         7 kI~lvG~~nvGKTsL~n~l~g~~   29 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLFNALTGTK   29 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            68999999999999999999854

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.01  E-value=0.012  Score=52.44  Aligned_cols=24  Identities=21%  Similarity=0.382  Sum_probs=21.1

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhc
Q 048556          288 SGTTAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      +.-+++++|++|+|||||++.+.+
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            344789999999999999999985

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=95.01  E-value=0.0059  Score=56.03  Aligned_cols=25  Identities=32%  Similarity=0.417  Sum_probs=22.2

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhccC
Q 048556          289 GTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       289 G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .-+++++|++|+|||||++.+.+-.
T Consensus        29 ~~~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           29 QPEIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            3479999999999999999999864

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=94.99  E-value=0.012  Score=52.67  Aligned_cols=23  Identities=26%  Similarity=0.452  Sum_probs=20.7

Q ss_pred             CEEEEEcCCCCChHHHHHHHhcc
Q 048556          290 TTAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      -+++++|++|+|||||++.+.+-
T Consensus        18 ~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           18 LQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             EEEEEECCTTSCHHHHHHHHSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999873

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=94.98  E-value=0.011  Score=57.14  Aligned_cols=22  Identities=32%  Similarity=0.282  Sum_probs=20.2

Q ss_pred             CEEEEEcCCCCChHHHHHHHhc
Q 048556          290 TTAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      ..+.|.|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999986

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=94.97  E-value=0.013  Score=54.23  Aligned_cols=28  Identities=18%  Similarity=0.330  Sum_probs=25.2

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccCCC
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFYDP  315 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~  315 (478)
                      +|.++.+-|++||||||+++.|...+..
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~   29 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLEQ   29 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4889999999999999999999887754

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=94.96  E-value=0.084  Score=63.53  Aligned_cols=30  Identities=23%  Similarity=0.361  Sum_probs=26.5

Q ss_pred             ecCCCEEEEEcCCCCChHHHHHHHhccCCC
Q 048556          286 IPSGTTAALVGQSGSGKSTVISLIERFYDP  315 (478)
Q Consensus       286 i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~  315 (478)
                      +++|+.+.|.||+|+|||||+.-++.-...
T Consensus       380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~  409 (2050)
T 3cmu_A          380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR  409 (2050)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             ccCCcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            899999999999999999998888765543

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=94.96  E-value=0.011  Score=52.42  Aligned_cols=22  Identities=23%  Similarity=0.383  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.+-
T Consensus        23 ~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           23 KVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             EEEEEEETTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999864

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=94.95  E-value=0.011  Score=53.42  Aligned_cols=22  Identities=32%  Similarity=0.427  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.+-
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999864

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.95  E-value=0.012  Score=53.39  Aligned_cols=23  Identities=30%  Similarity=0.404  Sum_probs=20.6

Q ss_pred             CEEEEEcCCCCChHHHHHHHhcc
Q 048556          290 TTAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      =.++++|++|+|||||++.+.+-
T Consensus        21 ~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           21 MKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            47899999999999999999854

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=94.93  E-value=0.012  Score=52.49  Aligned_cols=22  Identities=36%  Similarity=0.431  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.+-
T Consensus        24 ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           24 ELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999999863

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=94.93  E-value=0.013  Score=52.69  Aligned_cols=24  Identities=25%  Similarity=0.318  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCC
Q 048556          291 TAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      +++++|++|+|||||++.+.+-..
T Consensus        22 ki~~vG~~~vGKTsLi~~l~~~~~   45 (196)
T 3llu_A           22 RILLMGLRRSGKSSIQKVVFHKMS   45 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCC
Confidence            799999999999999999988543

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=94.92  E-value=0.012  Score=52.28  Aligned_cols=22  Identities=27%  Similarity=0.456  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.+-
T Consensus        17 ~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           17 KILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999999864

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=94.91  E-value=0.012  Score=52.98  Aligned_cols=25  Identities=20%  Similarity=0.264  Sum_probs=21.5

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhccC
Q 048556          289 GTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       289 G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .-+++++|++|+|||||++.+.+-.
T Consensus        28 ~~ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           28 AYKIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred             CeEEEEECcCCCCHHHHHHHHHhCC
Confidence            3478999999999999999998643

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.91  E-value=0.012  Score=53.57  Aligned_cols=33  Identities=12%  Similarity=0.246  Sum_probs=23.5

Q ss_pred             ccceeeecCCCEEEEEcCCCCChHHHHHHHhcc
Q 048556          280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       280 ~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      .|+.|.-..--+++++|++|+|||||++.+.+-
T Consensus        16 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           16 ENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             ---CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cccccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence            334333333347999999999999999999874

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.91  E-value=0.012  Score=52.77  Aligned_cols=23  Identities=26%  Similarity=0.407  Sum_probs=20.6

Q ss_pred             CEEEEEcCCCCChHHHHHHHhcc
Q 048556          290 TTAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      -+++++|++|+|||||++.+.+-
T Consensus        29 ~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           29 VKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            36899999999999999999864

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=94.90  E-value=0.079  Score=52.23  Aligned_cols=34  Identities=18%  Similarity=0.288  Sum_probs=26.0

Q ss_pred             ceeeecCCC---EEEEEcCCCCChHHHHHHHhccCCC
Q 048556          282 FSLSIPSGT---TAALVGQSGSGKSTVISLIERFYDP  315 (478)
Q Consensus       282 is~~i~~G~---~~~ivG~sGsGKSTL~~ll~g~~~~  315 (478)
                      +.=.++.|+   .+.+.||.|+||||+++.++..+..
T Consensus        14 l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~   50 (334)
T 1a5t_A           14 LVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLC   50 (334)
T ss_dssp             HHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             HHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence            333455555   4899999999999999999886543

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=94.90  E-value=0.013  Score=52.56  Aligned_cols=22  Identities=18%  Similarity=0.347  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.+-
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            6899999999999999999875

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=94.88  E-value=0.012  Score=57.31  Aligned_cols=24  Identities=33%  Similarity=0.301  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCC
Q 048556          291 TAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      .++|+|++|+|||||++.|.|..-
T Consensus        26 ~I~vvG~~~~GKSTlln~l~g~~~   49 (315)
T 1jwy_B           26 QIVVVGSQSSGKSSVLENIVGRDF   49 (315)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             eEEEEcCCCCCHHHHHHHHHCCCc
Confidence            699999999999999999998753

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=94.87  E-value=0.0052  Score=58.42  Aligned_cols=31  Identities=29%  Similarity=0.528  Sum_probs=24.1

Q ss_pred             ccceeeecCCCEEEEEcCCCCChHHHHHHHhcc
Q 048556          280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       280 ~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      .++....++|  +.|.||+|+|||||++.+++.
T Consensus        37 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           37 ANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             HHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred             HHCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence            3344444555  889999999999999999874

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=94.86  E-value=0.012  Score=58.10  Aligned_cols=25  Identities=16%  Similarity=0.294  Sum_probs=22.2

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccCC
Q 048556          290 TTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      ..+.|+||+|||||||.+.|+..+.
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~   30 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALP   30 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            3789999999999999999998763

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=94.86  E-value=0.012  Score=53.94  Aligned_cols=24  Identities=25%  Similarity=0.351  Sum_probs=21.3

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccC
Q 048556          290 TTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      -.++++|++|+|||||++-|++..
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            478999999999999999998764

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=94.85  E-value=0.014  Score=54.56  Aligned_cols=29  Identities=28%  Similarity=0.485  Sum_probs=25.5

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccCCC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFYDP  315 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~  315 (478)
                      .+|..+++.|++||||||+.+.|...+..
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            46889999999999999999999877643

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=94.84  E-value=0.014  Score=55.75  Aligned_cols=30  Identities=27%  Similarity=0.426  Sum_probs=23.1

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccCCCCccE
Q 048556          290 TTAALVGQSGSGKSTVISLIERFYDPQAGE  319 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~  319 (478)
                      ..++++|.+|+|||||++.|.|-..+..|.
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~  129 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA  129 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence            589999999999999999999876544443

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=94.83  E-value=0.013  Score=54.99  Aligned_cols=27  Identities=26%  Similarity=0.449  Sum_probs=23.8

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      +|..++|.|+.||||||+++.|...++
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            367899999999999999999997763

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=94.82  E-value=0.014  Score=53.20  Aligned_cols=23  Identities=26%  Similarity=0.290  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +++++|++|+|||||++.+.+-.
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~~~   49 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTDNK   49 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            68999999999999999998753

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=94.81  E-value=0.012  Score=51.80  Aligned_cols=29  Identities=17%  Similarity=0.306  Sum_probs=24.5

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccCCC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFYDP  315 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~  315 (478)
                      +.+..+.|+||+|+|||||++.+......
T Consensus        41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~   69 (187)
T 2p65_A           41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQ   69 (187)
T ss_dssp             SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            44667899999999999999999887644

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=94.81  E-value=0.053  Score=56.39  Aligned_cols=76  Identities=20%  Similarity=0.266  Sum_probs=54.5

Q ss_pred             ccccCCCCCCChHHHHHHHHHH--HHcC---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 048556          391 TMVGEHGTQLSGGQKQRIAIAR--AILK---------------DPRILLLDEATSALDAESERVVQEALDKIMINRTTVI  453 (478)
Q Consensus       391 t~~~~~g~~LSgGq~Qrl~lAR--all~---------------~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~  453 (478)
                      +.+......+||||+|-.-+|.  |++.               .-.+++|||+ +-+|.+..+..++.++++  +--+|+
T Consensus       371 ~~~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l--glQlii  447 (483)
T 3euj_A          371 GWMRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL--DMQLLI  447 (483)
T ss_dssp             EEEECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT--TCEEEE
T ss_pred             ceeecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc--CCEEEE
Confidence            5556667789999999543333  2211               1257999999 999999999999999876  445666


Q ss_pred             EecCchhhhhcCEEEEE
Q 048556          454 VAHRLSTVRNADLIAVI  470 (478)
Q Consensus       454 itH~~~~~~~~d~i~vl  470 (478)
                      +|=. .....+|.++.+
T Consensus       448 atP~-~i~p~v~~~~~~  463 (483)
T 3euj_A          448 AAPE-NISPERGTTYKL  463 (483)
T ss_dssp             EESS-SCCCSSSEEEEC
T ss_pred             ECcc-hhhhccCceEEE
Confidence            7655 445567888765

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=94.79  E-value=0.014  Score=53.44  Aligned_cols=22  Identities=27%  Similarity=0.540  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.+-
T Consensus        36 ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           36 KVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            6899999999999999999863

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=94.79  E-value=0.017  Score=51.58  Aligned_cols=25  Identities=16%  Similarity=0.178  Sum_probs=21.9

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhc
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      -.|.-+.|.|+||+|||||...|..
T Consensus        14 v~G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A           14 IDKMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred             ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence            4588999999999999999987754

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=94.79  E-value=0.01  Score=52.15  Aligned_cols=22  Identities=27%  Similarity=0.338  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.+-
T Consensus         9 ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999998864

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=94.78  E-value=0.014  Score=52.15  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.+-
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHhC
Confidence            6899999999999999888653

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=94.78  E-value=0.015  Score=52.25  Aligned_cols=23  Identities=22%  Similarity=0.378  Sum_probs=20.1

Q ss_pred             CEEEEEcCCCCChHHHHHHHhcc
Q 048556          290 TTAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      -+++++|++|+|||||++.+.+-
T Consensus        21 ~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           21 VKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC-
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            47899999999999999999864

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=94.76  E-value=0.0097  Score=52.55  Aligned_cols=22  Identities=32%  Similarity=0.443  Sum_probs=9.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.+-
T Consensus        10 ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEECCCCC------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999998764

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=94.76  E-value=0.013  Score=56.41  Aligned_cols=23  Identities=30%  Similarity=0.336  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .++++|++|+|||||++.|.|..
T Consensus        28 ~i~vvG~~~~GKSSLln~l~g~~   50 (299)
T 2aka_B           28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHHCCC
Confidence            79999999999999999999865

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=94.76  E-value=0.014  Score=55.58  Aligned_cols=23  Identities=26%  Similarity=0.407  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .++++|++|+|||||++.+.|--
T Consensus        38 ~I~lvG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           38 TVLVLGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999854

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=94.75  E-value=0.014  Score=52.39  Aligned_cols=25  Identities=20%  Similarity=0.355  Sum_probs=21.7

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhc
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      ++.-+++++|++|+|||||++.+.+
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHh
Confidence            3455799999999999999999975

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=94.75  E-value=0.0097  Score=54.40  Aligned_cols=22  Identities=32%  Similarity=0.465  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.+-
T Consensus        13 ki~vvG~~~~GKSsli~~l~~~   34 (218)
T 4djt_A           13 KICLIGDGGVGKTTYINRVLDG   34 (218)
T ss_dssp             EEEEECCTTSSHHHHHCBCTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999854

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=94.75  E-value=0.014  Score=55.75  Aligned_cols=23  Identities=30%  Similarity=0.407  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .++++|++|+|||||++.+.|-.
T Consensus        41 ~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           41 TILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999754

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=94.71  E-value=0.019  Score=52.20  Aligned_cols=24  Identities=21%  Similarity=0.205  Sum_probs=21.1

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccC
Q 048556          290 TTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      -+++++|++|+|||||++.+.+-.
T Consensus         8 ~ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            8 RAVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            478999999999999999998653

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=94.70  E-value=0.014  Score=52.69  Aligned_cols=22  Identities=18%  Similarity=0.433  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.+-
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999999874

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=94.60  E-value=0.016  Score=56.69  Aligned_cols=25  Identities=20%  Similarity=0.367  Sum_probs=22.0

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhccC
Q 048556          289 GTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       289 G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      ...+.|+||||||||||...|+..+
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhC
Confidence            3478999999999999999998765

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=94.55  E-value=0.014  Score=51.94  Aligned_cols=24  Identities=13%  Similarity=0.335  Sum_probs=21.0

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhc
Q 048556          288 SGTTAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      +.-+++++|++|+|||||++.+.+
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~   44 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHL   44 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHc
Confidence            445799999999999999999964

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=94.52  E-value=0.0076  Score=62.02  Aligned_cols=38  Identities=24%  Similarity=0.356  Sum_probs=29.6

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCee
Q 048556          289 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVN  326 (478)
Q Consensus       289 G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~  326 (478)
                      ...++++|++|+||||++..|++.+.....++.+-..|
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D  136 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD  136 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence            35899999999999999999999887543455553333

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=94.51  E-value=0.017  Score=51.62  Aligned_cols=22  Identities=18%  Similarity=0.309  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999864

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=94.51  E-value=0.019  Score=52.96  Aligned_cols=22  Identities=32%  Similarity=0.614  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++|+|++|+|||||++.+.|.
T Consensus        39 kVvlvG~~~vGKSSLl~r~~~~   60 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLANIFAGV   60 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6999999999999999999864

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=94.47  E-value=0.022  Score=52.96  Aligned_cols=25  Identities=40%  Similarity=0.659  Sum_probs=22.5

Q ss_pred             ecCCCEEEEEcCCCCChHHHHHHHh
Q 048556          286 IPSGTTAALVGQSGSGKSTVISLIE  310 (478)
Q Consensus       286 i~~G~~~~ivG~sGsGKSTL~~ll~  310 (478)
                      +++|+.+.|.|++|+|||||+.-++
T Consensus        27 l~~G~l~~i~G~pG~GKT~l~l~~~   51 (251)
T 2zts_A           27 FPEGTTVLLTGGTGTGKTTFAAQFI   51 (251)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            8999999999999999999986543

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=94.46  E-value=0.012  Score=59.28  Aligned_cols=33  Identities=21%  Similarity=0.300  Sum_probs=29.2

Q ss_pred             cceeeecCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          281 GFSLSIPSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       281 ~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      |.=+.|-+|++.+|+|++|+|||||+..|+...
T Consensus       167 D~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i  199 (427)
T 3l0o_A          167 DLFAPIGKGQRGMIVAPPKAGKTTILKEIANGI  199 (427)
T ss_dssp             HHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred             hhcccccCCceEEEecCCCCChhHHHHHHHHHH
Confidence            455778999999999999999999999888764

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=94.34  E-value=0.021  Score=52.51  Aligned_cols=24  Identities=21%  Similarity=0.342  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCC
Q 048556          291 TAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      ++.|+||+||||+|..+.|+.-|.
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g   25 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKG   25 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            578999999999999999997763

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=94.32  E-value=0.019  Score=52.70  Aligned_cols=24  Identities=25%  Similarity=0.357  Sum_probs=21.1

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccC
Q 048556          290 TTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      -+++|+|++|+|||||++-+++-.
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            478999999999999999888764

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=94.30  E-value=0.15  Score=60.47  Aligned_cols=37  Identities=22%  Similarity=0.287  Sum_probs=29.1

Q ss_pred             cccccceee---ecCCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556          277 QIFNGFSLS---IPSGTTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       277 ~~l~~is~~---i~~G~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      +.|+.+ +.   +++|+.+.|.||+|+|||||+.-++.-..
T Consensus       369 ~~LD~l-Lg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~  408 (1706)
T 3cmw_A          369 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ  408 (1706)
T ss_dssp             HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHH-hccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            445554 33   88999999999999999999887765443

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=94.28  E-value=0.02  Score=56.15  Aligned_cols=27  Identities=22%  Similarity=0.341  Sum_probs=24.8

Q ss_pred             eecCCCEEEEEcCCCCChHHHHHHHhc
Q 048556          285 SIPSGTTAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      -+++|+++.|.||+|||||||+.-++.
T Consensus        94 Gl~~g~i~~i~G~~gsGKT~la~~la~  120 (322)
T 2i1q_A           94 GLESQSVTEFAGVFGSGKTQIMHQSCV  120 (322)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999999988775

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=94.27  E-value=0.02  Score=51.76  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.+-
T Consensus        31 ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhhC
Confidence            6899999999999999999764

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=94.26  E-value=0.02  Score=59.48  Aligned_cols=46  Identities=17%  Similarity=0.418  Sum_probs=32.9

Q ss_pred             ecCCCEEEEEcCCCCChHHHHHHHhccC----CCCc--------cEEEECCeecCCCC
Q 048556          286 IPSGTTAALVGQSGSGKSTVISLIERFY----DPQA--------GEVLIDGVNLKEFQ  331 (478)
Q Consensus       286 i~~G~~~~ivG~sGsGKSTL~~ll~g~~----~~~~--------G~i~~~g~~~~~~~  331 (478)
                      .++|-+++|+|++|+|||||++.|.+-.    .+..        ..+.++|.++.-+|
T Consensus       221 ~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liD  278 (462)
T 3geh_A          221 LRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLD  278 (462)
T ss_dssp             HHHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC
T ss_pred             hcCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEE
Confidence            3456679999999999999999998852    1112        35777887654443

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=94.26  E-value=0.022  Score=51.39  Aligned_cols=26  Identities=35%  Similarity=0.520  Sum_probs=21.3

Q ss_pred             CCCEEEEEcCCCCChHHHH-HHHhccC
Q 048556          288 SGTTAALVGQSGSGKSTVI-SLIERFY  313 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~-~ll~g~~  313 (478)
                      +|.++.++||.||||||++ +++.++.
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~   28 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVEIYK   28 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4889999999999999997 5555443

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=94.21  E-value=0.023  Score=51.55  Aligned_cols=23  Identities=17%  Similarity=0.345  Sum_probs=19.7

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhc
Q 048556          289 GTTAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       289 G~~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      .=+++++|++|+|||||++.+.+
T Consensus        30 ~~ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           30 AIKCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHHh
Confidence            34789999999999999977764

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=94.20  E-value=0.19  Score=47.02  Aligned_cols=51  Identities=20%  Similarity=0.184  Sum_probs=38.4

Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecC-----------chhhhhcCEEEEEe
Q 048556          416 KDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHR-----------LSTVRNADLIAVIH  471 (478)
Q Consensus       416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~-----------~~~~~~~d~i~vl~  471 (478)
                      .+.+++++||.--..|   ..++.+.+..  .+..||+..++           ...+..||.|.-|.
T Consensus        89 ~~~dvViIDEaQF~~~---v~el~~~l~~--~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk  150 (234)
T 2orv_A           89 LGVAVIGIDEGQFFPD---IVEFCEAMAN--AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT  150 (234)
T ss_dssp             TTCSEEEESSGGGCTT---HHHHHHHHHH--TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred             ccCCEEEEEchhhhhh---HHHHHHHHHh--CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence            6789999999998865   4455566554  57899999999           34567799987763

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=94.20  E-value=0.011  Score=53.30  Aligned_cols=22  Identities=36%  Similarity=0.545  Sum_probs=4.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      .++++|++|+|||||++.+.+-
T Consensus        22 ~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           22 KVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEC-----------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            7899999999999999988765

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=94.18  E-value=0.022  Score=55.61  Aligned_cols=25  Identities=44%  Similarity=0.573  Sum_probs=21.8

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhcc
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      ++-+++++|++|+|||||++.+.+-
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~   26 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSN   26 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            4458999999999999999997765

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=94.15  E-value=0.023  Score=52.26  Aligned_cols=22  Identities=36%  Similarity=0.598  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      .++++|++|+|||||++.+.+-
T Consensus        15 ki~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           15 KIVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            6899999999999999999864

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=94.11  E-value=0.022  Score=57.83  Aligned_cols=24  Identities=21%  Similarity=0.428  Sum_probs=21.3

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccC
Q 048556          290 TTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      ..++|.||||||||||...|+.-+
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~   26 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKF   26 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHHHC
Confidence            478999999999999999998665

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=94.08  E-value=0.3  Score=50.03  Aligned_cols=36  Identities=22%  Similarity=0.467  Sum_probs=27.5

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccCCCCcc-EEEE
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFYDPQAG-EVLI  322 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G-~i~~  322 (478)
                      ++...++++|++|+||||+.--|+..+.-..| ++.+
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVll  134 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLV  134 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEE
Confidence            34568999999999999999999877754324 4444

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=94.04  E-value=0.025  Score=51.79  Aligned_cols=23  Identities=22%  Similarity=0.447  Sum_probs=20.5

Q ss_pred             CEEEEEcCCCCChHHHHHHHhcc
Q 048556          290 TTAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      -+++++|++|+|||||++.+.+-
T Consensus        28 ~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           28 CKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            37899999999999999998764

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=93.88  E-value=0.027  Score=51.08  Aligned_cols=22  Identities=18%  Similarity=0.274  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.+-
T Consensus        11 ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A           11 KCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999998753

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=93.82  E-value=0.034  Score=53.70  Aligned_cols=27  Identities=26%  Similarity=0.342  Sum_probs=23.2

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhccCCC
Q 048556          289 GTTAALVGQSGSGKSTVISLIERFYDP  315 (478)
Q Consensus       289 G~~~~ivG~sGsGKSTL~~ll~g~~~~  315 (478)
                      +-.++++|.+|+|||||+|.|.|-...
T Consensus       120 ~~~v~~vG~~nvGKSsliN~l~~~~~~  146 (282)
T 1puj_A          120 AIRALIIGIPNVGKSTLINRLAKKNIA  146 (282)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCC
T ss_pred             CceEEEEecCCCchHHHHHHHhcCcee
Confidence            347999999999999999999987643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	478
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	3e-92
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	7e-89
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	7e-84
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	8e-80
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	1e-78
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	6e-71
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	2e-52
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	3e-43
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	1e-42
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	3e-41
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	2e-40
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	9e-40
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	3e-37
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	2e-35
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	7e-35
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	6e-34
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	6e-34
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	1e-30
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	3e-30
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	3e-28
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	1e-22
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	8e-11
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	2e-10
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	9e-04
d2i3ba1	189	c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57	1e-07
d3b60a2	319	f.37.1.1 (A:10-328) Multidrug resistance ABC trans	2e-06
d2hyda2	323	f.37.1.1 (A:1-323) Putative multidrug export ATP-b	7e-05
d1w1wa_	427	c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac	6e-04

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score =  278 bits (713), Expect = 3e-92
 Identities = 116/224 (51%), Positives = 158/224 (70%), Gaps = 1/224 (0%)

Query: 254 LDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFY 313
           ++  +G I++  + F Y       I    +LSI  G T A VG SG GKST+I+LI RFY
Sbjct: 10  IEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 68

Query: 314 DPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAA 373
           D  +G++LIDG N+K+F    +R +IGLV Q+ +LF+ ++K+NI  G+  A+  E++ AA
Sbjct: 69  DVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAA 128

Query: 374 ELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 433
           ++ANA  FI +LPQG DT VGE G +LSGGQKQR++IAR  L +P IL+LDEATSALD E
Sbjct: 129 KMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 188

Query: 434 SERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
           SE ++QEALD +  +RTT+IVAHRLST+ +AD I VI  G +VE
Sbjct: 189 SESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVE 232

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score =  269 bits (690), Expect = 7e-89
 Identities = 114/231 (49%), Positives = 158/231 (68%), Gaps = 2/231 (0%)

Query: 248 DSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVIS 307
           D     +D   GD+E +++ F+YP R         +L IP+G T ALVG+SGSGKST+ S
Sbjct: 1   DEGKRVIDRATGDLEFRNVTFTYPGRE-VPALRNINLKIPAGKTVALVGRSGSGKSTIAS 59

Query: 308 LIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGK-DGASI 366
           LI RFYD   G +L+DG +L+E+ L  +R ++ LVSQ   LF  ++ +NI Y + +  S 
Sbjct: 60  LITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSR 119

Query: 367 AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 426
            +I  AA +A A  FI+ +  GLDT++GE+G  LSGGQ+QRIAIARA+L+D  IL+LDEA
Sbjct: 120 EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEA 179

Query: 427 TSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
           TSALD ESER +Q ALD++  NRT++++AHRLST+  AD I V+  G +VE
Sbjct: 180 TSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVE 230

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  257 bits (657), Expect = 7e-84
 Identities = 89/229 (38%), Positives = 144/229 (62%), Gaps = 3/229 (1%)

Query: 252 VKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIER 311
           +    + G ++ +D+ F+YP+RP   +  G + ++  G   ALVG +GSGKSTV +L++ 
Sbjct: 3   LTPLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQN 62

Query: 312 FYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG-KDGASIAEIM 370
            Y P  G++L+DG  L +++ +++  ++  V QEP +F  S+++NI YG     ++ EI 
Sbjct: 63  LYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEIT 122

Query: 371 AAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 430
           AAA  + A  FI  LPQG DT V E G+QLSGGQ+Q +A+ARA+++ P +L+LD+ATSAL
Sbjct: 123 AAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSAL 182

Query: 431 DAESERVVQEALDKIM--INRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
           DA S+  V++ L +     +R+ +++   LS V  AD I  +  G + E
Sbjct: 183 DANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIRE 231

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score =  246 bits (629), Expect = 8e-80
 Identities = 109/218 (50%), Positives = 148/218 (67%), Gaps = 1/218 (0%)

Query: 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 319
           DI  ++I F Y       I +  +LSI  G    +VG+SGSGKST+  LI+RFY P+ G+
Sbjct: 1   DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59

Query: 320 VLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAA 379
           VLIDG +L      W+R ++G+V Q+ VL   SI DNI+    G S+ +++ AA+LA A 
Sbjct: 60  VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119

Query: 380 KFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQ 439
            FI  L +G +T+VGE G  LSGGQ+QRIAIARA++ +P+IL+ DEATSALD ESE V+ 
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179

Query: 440 EALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
             + KI   RT +I+AHRLSTV+NAD I V+ +GK+VE
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVE 217

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score =  243 bits (621), Expect = 1e-78
 Identities = 95/218 (43%), Positives = 144/218 (66%), Gaps = 3/218 (1%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           +  + + F+Y     EQI    S      +  A  G SG GKST+ SL+ERFY P AGE+
Sbjct: 2   LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDG-ASIAEIMAAAELANAA 379
            IDG  +    L+  R +IG VSQ+  +   +I++N+ YG +G  +  ++    +LA A 
Sbjct: 60  TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119

Query: 380 KFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQ 439
            F++++P  L+T VGE G ++SGGQ+QR+AIARA L++P+IL+LDEAT++LD+ESE +VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179

Query: 440 EALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
           +ALD +M  RTT+++AHRLST+ +AD I  I +G++  
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITG 217

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  224 bits (573), Expect = 6e-71
 Identities = 60/224 (26%), Positives = 107/224 (47%), Gaps = 15/224 (6%)

Query: 255 DDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD 314
            D +   +  ++ FS+    G  +    +L+I  G   A+ G +GSGK++++ LI    +
Sbjct: 28  GDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE 87

Query: 315 PQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAE 374
              G +   G             ++   SQ   +   +IK+NI +G          +  +
Sbjct: 88  ASEGIIKHSG-------------RVSFCSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVK 133

Query: 375 LANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 434
                + I    +  +T++GE G  LSGGQ+ RI++ARA+ KD  + LLD     LD  +
Sbjct: 134 ACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFT 193

Query: 435 -ERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
            E+V +  + K+M N+T ++V  ++  +R AD I ++HQG    
Sbjct: 194 EEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYF 237

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  174 bits (443), Expect = 2e-52
 Identities = 64/225 (28%), Positives = 107/225 (47%), Gaps = 9/225 (4%)

Query: 261 IELKDIYFSYPSRPGE-QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 319
           I+LK++  +Y             +L+I  G   +++G SGSGKST++++I     P  GE
Sbjct: 2   IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61

Query: 320 VLIDGVNL----KEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAE 374
           V ID +       +   K  R KIG V Q+  L    +  +N+            M+  E
Sbjct: 62  VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGA-MSGEE 120

Query: 375 LANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 434
               A     + +  +        QLSGGQ+QR+AIARA+  +P I+L D+ T ALD+++
Sbjct: 121 RRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKT 180

Query: 435 ERVVQEALDKI--MINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
              + + L K+     +T V+V H ++  R  + I  +  G++  
Sbjct: 181 GEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  150 bits (381), Expect = 3e-43
 Identities = 60/228 (26%), Positives = 107/228 (46%), Gaps = 26/228 (11%)

Query: 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 319
           +++L+++   + +       N  +L+I  G    L+G SG GK+T + +I    +P  G 
Sbjct: 6   EVKLENLTKRFGNF---TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 62

Query: 320 VLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNI-----NYGKDGASIAE-IMAA 372
           +     +     L      I +V Q   ++   ++ +NI             I + +  A
Sbjct: 63  IYFGDRD--VTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWA 120

Query: 373 AELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 432
           AEL    + ++  P            QLSGGQ+QR+A+ARAI+ +P +LL+DE  S LDA
Sbjct: 121 AELLQIEELLNRYP-----------AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA 169

Query: 433 ESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477
           +    ++  + K+      TT+ V H         D IAV+++G+L++
Sbjct: 170 KLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQ 217

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score =  148 bits (375), Expect = 1e-42
 Identities = 48/227 (21%), Positives = 95/227 (41%), Gaps = 28/227 (12%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           ++L+D+  S             S  + +G    LVG +G+GKST+++ +        G +
Sbjct: 4   MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 55

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEP-VLFTSSIKDNINYGKDGASIAEIMAAAELANAA 379
              G  L+ +    +      +SQ+    F + +   +   +   +  E++     A   
Sbjct: 56  QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-- 113

Query: 380 KFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK-------DPRILLLDEATSALDA 432
                    LD  +G    QLSGG+ QR+ +A  +L+         ++LLLDE  ++LD 
Sbjct: 114 --------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 165

Query: 433 ESERVVQEALDKIMI-NRTTVIVAHRLSTV-RNADLIAVIHQGKLVE 477
             +  + + L  +       V+ +H L+   R+A    ++  GK++ 
Sbjct: 166 AQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLA 212

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score =  145 bits (367), Expect = 3e-41
 Identities = 74/231 (32%), Positives = 111/231 (48%), Gaps = 25/231 (10%)

Query: 261 IELKDIYFSYPSRPGE-QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 319
           I+L +I   +       Q  N  SL +P+G    ++G SG+GKST+I  +     P  G 
Sbjct: 2   IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61

Query: 320 VLIDGVN---LKEFQLKWIRGKIGLVSQEPVLF-TSSIKDNI-----NYGKDGASIAE-I 369
           VL+DG     L E +L   R +IG++ Q   L  + ++  N+             +   +
Sbjct: 62  VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121

Query: 370 MAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 429
                L       DS P             LSGGQKQR+AIARA+  +P++LL DEATSA
Sbjct: 122 TELLSLVGLGDKHDSYPS-----------NLSGGQKQRVAIARALASNPKVLLCDEATSA 170

Query: 430 LDAESERVVQEALDKI--MINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477
           LD  + R + E L  I   +  T +++ H +  V+   D +AVI  G+L+E
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE 221

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score =  143 bits (363), Expect = 2e-40
 Identities = 61/236 (25%), Positives = 108/236 (45%), Gaps = 28/236 (11%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           + + D++  Y      ++  G SL   +G   +++G SGSGKST +  I     P  G +
Sbjct: 3   LHVIDLHKRYGGH---EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59

Query: 321 LIDGVNL-------------KEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYG---KDG 363
           +++G N+              + QL+ +R ++ +V Q   L++  ++ +N+        G
Sbjct: 60  IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119

Query: 364 ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLL 423
            S  +    A        +    +            LSGGQ+QR++IARA+  +P +LL 
Sbjct: 120 LSKHDARERAL--KYLAKVGIDERAQGKYPV----HLSGGQQQRVSIARALAMEPDVLLF 173

Query: 424 DEATSALDA-ESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477
           DE TSALD      V++         +T V+V H +   R+ +  +  +HQGK+ E
Sbjct: 174 DEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 229

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score =  140 bits (354), Expect = 9e-40
 Identities = 47/217 (21%), Positives = 99/217 (45%), Gaps = 27/217 (12%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           +E++D+   Y     + +    +++I  G      G +G GK+T++  I  +  P  GE+
Sbjct: 3   LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLF-TSSIKDNINYG----KDGASIAEIMAAAEL 375
           + +GV + +     ++GKI  + +E ++    S++D +           +  EIM A E 
Sbjct: 59  IYNGVPITK-----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 113

Query: 376 ANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 435
                    L +            LS G  +R+ +A  +L +  I +LD+   A+D +S+
Sbjct: 114 VEVLDLKKKLGE------------LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 161

Query: 436 RVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQ 472
             V +++ +I+  +  VI++ R   +   D+   +H+
Sbjct: 162 HKVLKSILEILKEKGIVIISSR-EELSYCDVNENLHK 197

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score =  134 bits (339), Expect = 3e-37
 Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 16/225 (7%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           + L D++  +            SL +  G    L+G SG GK+T + +I    +P  G++
Sbjct: 4   VRLVDVWKVFGEV---TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60

Query: 321 LIDGVNL----KEFQLKWIRGKIGLVSQEPVLF-TSSIKDNINYGKDGASIAEIMAAAEL 375
            I    +    K   +      I +V Q   L+   ++ DNI +      +        +
Sbjct: 61  YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120

Query: 376 ANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 435
              A+ +     GL  ++     +LSGGQ+QR+A+ RAI++ P++ L+DE  S LDA+  
Sbjct: 121 REVAELL-----GLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLR 175

Query: 436 RVVQEALDKI--MINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477
             ++  L K+   +  TT+ V H         D IAV+++G L +
Sbjct: 176 VRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQ 220

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  129 bits (325), Expect = 2e-35
 Identities = 56/227 (24%), Positives = 102/227 (44%), Gaps = 26/227 (11%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           ++L+++  ++       +    +L I  G     VG SG GKST++ +I       +G++
Sbjct: 1   VQLQNVTKAWGEV---VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLF-TSSIKDNINYG------KDGASIAEIMAAA 373
            I    + +         +G+V Q   L+   S+ +N+++G      K       +   A
Sbjct: 58  FIGEKRMND--TPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 115

Query: 374 ELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 433
           E+   A  +D  P+            LSGGQ+QR+AI R ++ +P + LLDE  S LDA 
Sbjct: 116 EVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA 164

Query: 434 SERVVQEALDKI--MINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477
               ++  + ++   + RT + V H        AD I V+  G++ +
Sbjct: 165 LRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ 211

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score =  128 bits (322), Expect = 7e-35
 Identities = 55/222 (24%), Positives = 102/222 (45%), Gaps = 12/222 (5%)

Query: 259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG 318
           G + +KD+      +   +I  G S  I  G    L+G +G+GK+T + +I     P +G
Sbjct: 1   GAVVVKDLRKRIGKK---EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57

Query: 319 EVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELAN 377
            V + G N    +   +R  I  + +E   + +    + + +     + +       +  
Sbjct: 58  IVTVFGKN-VVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVER 116

Query: 378 AAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERV 437
           A +       GL   + +  +  S G  +++ IARA++ +PR+ +LDE TS LD  + R 
Sbjct: 117 ATEIA-----GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNARE 171

Query: 438 VQEALDKIMINRTTVI-VAHRLSTVRN-ADLIAVIHQGKLVE 477
           V++ L +      T++  +H +  V    D IA+IH G +VE
Sbjct: 172 VRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVE 213

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score =  125 bits (316), Expect = 6e-34
 Identities = 51/221 (23%), Positives = 97/221 (43%), Gaps = 12/221 (5%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           +E++ ++  Y +        G  L +P G    L+G +G+GK+T +S I      Q G++
Sbjct: 7   LEVQSLHVYYGAI---HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63

Query: 321 LIDGVNL--KEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANA 378
           + +G ++  K   +    G   +     +    ++ +N+  G       E      +   
Sbjct: 64  IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE-----GIKRD 118

Query: 379 AKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVV 438
            ++I SL   L   + + G  LSGG++Q +AI RA++  P++L++DE +  L       V
Sbjct: 119 LEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178

Query: 439 QEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477
            E + KI     T ++V          A    V+  G++V 
Sbjct: 179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVL 219

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  126 bits (317), Expect = 6e-34
 Identities = 48/230 (20%), Positives = 97/230 (42%), Gaps = 17/230 (7%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           +  ++I   +      +  +G S+S+  G    ++G +GSGKST+I++I  F     G V
Sbjct: 5   LRTENIVKYFGEF---KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61

Query: 321 LIDGVNL-KEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYG---------KDGASIAEI 369
             +  ++  +   +     I    Q P      ++ +N+  G                 I
Sbjct: 62  YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 121

Query: 370 MAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 429
               E+   A  I      L  +      +LSGGQ + + I RA++ +P+++++DE  + 
Sbjct: 122 PKEEEMVEKAFKILEFL-KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAG 180

Query: 430 LDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477
           +       +   + ++     T +I+ HRL  V N  D + V+  G+++ 
Sbjct: 181 VAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA 230

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score =  116 bits (292), Expect = 1e-30
 Identities = 59/225 (26%), Positives = 113/225 (50%), Gaps = 15/225 (6%)

Query: 261 IELKDIYFSYPSRPGE-QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 319
           I +K++   +    G+    +  +++I +G    ++G SG+GK+T + +I     P  GE
Sbjct: 4   IIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61

Query: 320 VLIDGVNLKEFQLKWIRG---KIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAEL 375
           +  D   +       +     KIG+V Q   L+ + +  +NI +      +++      +
Sbjct: 62  LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121

Query: 376 ANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 435
              AK +D     +  ++     +LSG Q+QR+A+ARA++KDP +LLLDE  S LDA   
Sbjct: 122 EEVAKILD-----IHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMR 176

Query: 436 RVVQEALDKI--MINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477
              +  + ++   +  T ++V+H  + +   AD + V+ +GKLV+
Sbjct: 177 DSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQ 221

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score =  115 bits (288), Expect = 3e-30
 Identities = 63/221 (28%), Positives = 112/221 (50%), Gaps = 18/221 (8%)

Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
           IE++ +   +         +  SL + SG    ++G +G+GK+  + LI  F+ P +G +
Sbjct: 2   IEIESLSRKW----KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57

Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAA 379
           L+DG ++ +  L   +  I  V Q   LF   ++K N+ +G     I +     + A   
Sbjct: 58  LLDGKDVTD--LSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115

Query: 380 KFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQ 439
                    ++ ++  +   LSGG++QR+A+ARA++ +P+ILLLDE  SALD  ++   +
Sbjct: 116 --------KIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAR 167

Query: 440 EALDKI--MINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477
           E L  +      T + + H  +  R  AD IAV+  GKL++
Sbjct: 168 EMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQ 208

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score =  110 bits (275), Expect = 3e-28
 Identities = 68/214 (31%), Positives = 103/214 (48%), Gaps = 24/214 (11%)

Query: 275 GEQIFNGFSLSI---PSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ 331
            E+    F L++          L+G +G+GKS  + LI     P  GEV ++G ++    
Sbjct: 7   AEKRLGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--P 64

Query: 332 LKWIRGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAE----IMAAAELANAAKFIDSLP 386
           L   R  IG V Q+  LF   S+  NI YG       E    +   AE    A  +D  P
Sbjct: 65  LPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP 124

Query: 387 QGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKI- 445
                       +LSGG++QR+A+ARA++  PR+LLLDE  SA+D +++ V+ E L  + 
Sbjct: 125 A-----------RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQ 173

Query: 446 -MINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477
              +   + V H L      AD +AV+  G++VE
Sbjct: 174 REFDVPILHVTHDLIEAAMLADEVAVMLNGRIVE 207

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 92.7 bits (229), Expect = 1e-22
 Identities = 22/185 (11%), Positives = 44/185 (23%), Gaps = 29/185 (15%)

Query: 293 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSS 352
            + G+ G GK+T++  I      +A     + V   E + +     I    ++ +  +  
Sbjct: 4   IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKF 63

Query: 353 IKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR 412
                  G  G                             V     +         A   
Sbjct: 64  FTSKKLVGSYG-----------------------------VNVQYFEELAIPILERAYRE 94

Query: 413 AILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQ 472
           A     +++++DE         +            N   V              I  +  
Sbjct: 95  AKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPG 154

Query: 473 GKLVE 477
             L+E
Sbjct: 155 AVLIE 159

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 1e-07
 Identities = 24/186 (12%), Positives = 53/186 (28%), Gaps = 8/186 (4%)

Query: 294 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSI 353
           L G  G GK+T+I             V            + I   +  +S      +   
Sbjct: 6   LTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVG 65

Query: 354 KDNINYGKDGASIAEIMAAAELANAAKFID-----SLPQGLDTMVGEHGTQLSGGQKQRI 408
            +     ++      ++        A  +      S   G    V +   ++    +  I
Sbjct: 66  LEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFI 125

Query: 409 AIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIA 468
              R  L  P  ++L             +V+E  ++  +    V   +R   +   D++ 
Sbjct: 126 QAVRQTLSTPGTIILGTIPVPKGKPLA-LVEEIRNRKDVKVFNVTKENRNHLLP--DIVT 182

Query: 469 VIHQGK 474
            +   +
Sbjct: 183 CVQSSR 188

>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Multidrug resistance ABC transporter MsbA, N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 47.2 bits (110), Expect = 2e-06
 Identities = 25/162 (15%), Positives = 60/162 (37%)

Query: 81  WLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEK 140
           W L+++++   P + +   V+S     ++   Q         AEQ +   + V  F G++
Sbjct: 156 WQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQE 215

Query: 141 QAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDV 200
               ++++   K    G+    A+ +       +A  + +  ++      +      G +
Sbjct: 216 VETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTI 275

Query: 201 INVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP 242
             V   ++     L   +   + F  G AA   LF  ++ + 
Sbjct: 276 TVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 317

>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 42.6 bits (98), Expect = 7e-05
 Identities = 7/64 (10%), Positives = 21/64 (32%)

Query: 179 YSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAI 238
             + I  G  + +      G +   +  + +    L +     +      A+  ++F+ I
Sbjct: 259 PIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLI 318

Query: 239 ERKP 242
           +   
Sbjct: 319 DEDY 322

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.7 bits (91), Expect = 6e-04
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 6/83 (7%)

Query: 398 TQLSGGQKQRIAI----ARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVI 453
             LSGG+K   A+    A    +     +LDE  +ALD  + + +   + +        I
Sbjct: 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFI 390

Query: 454 VA-HRLSTVRNAD-LIAVIHQGK 474
           V   + +    +D L+ V  Q +
Sbjct: 391 VISLKNTMFEKSDALVGVYRQQQ 413

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	478
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	100.0
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	100.0
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	100.0
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	100.0
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	100.0
d3b60a2	319	Multidrug resistance ABC transporter MsbA, N-termi	99.95
d2hyda2	323	Putative multidrug export ATP-binding/permease pro	99.95
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.86
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.79
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	99.46
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	99.44
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.24
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	99.16
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	97.88
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.79
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.75
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	97.68
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.58
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.37
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.37
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.36
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.32
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.32
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.29
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.27
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.26
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	97.24
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.18
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.17
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.17
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.13
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.12
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.07
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.05
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.05
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.03
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.03
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.01
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.01
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.01
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.0
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.99
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.99
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.98
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.98
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.91
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.84
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.84
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.82
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.81
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.8
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.77
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.76
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.63
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.63
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.63
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.62
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.58
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.58
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.57
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.55
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.55
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.52
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.52
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.5
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.47
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.45
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.45
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.43
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.41
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.4
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.38
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.37
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.34
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.33
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.32
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.32
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.32
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.3
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.29
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.28
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.28
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.26
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.25
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.25
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.24
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.24
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.24
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.23
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.2
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.18
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.11
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.07
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.06
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.06
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.99
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.97
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.97
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	95.9
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	95.88
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.87
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.83
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	95.83
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	95.8
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	95.78
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	95.71
d1okkd2	207	GTPase domain of the signal recognition particle r	95.68
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	95.66
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	95.64
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.63
d2fh5b1	207	Signal recognition particle receptor beta-subunit	95.58
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.58
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.53
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.5
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.46
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.44
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.43
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	95.41
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.41
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	95.4
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.35
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.27
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.26
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.23
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	95.21
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	95.17
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	95.17
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	95.15
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.13
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.13
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.11
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.09
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	95.04
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	95.04
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	95.04
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.04
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.03
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	94.99
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	94.99
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	94.97
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	94.96
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	94.94
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	94.93
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	94.91
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.91
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	94.87
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	94.86
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	94.84
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	94.81
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	94.78
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	94.75
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	94.75
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	94.74
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	94.74
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	94.7
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	94.65
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	94.58
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	94.57
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	94.56
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	94.52
d1xpua3	289	Transcription termination factor Rho, ATPase domai	94.52
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	94.51
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	94.46
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	94.45
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	94.43
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	94.41
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	94.41
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	94.4
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	94.37
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	94.36
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	94.33
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	94.31
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	94.3
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	94.28
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	94.2
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.18
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	94.14
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	94.09
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	94.04
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.0
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	93.99
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	93.95
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	93.91
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	93.78
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	93.68
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	93.66
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	93.62
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	93.54
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	93.52
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	93.46
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	93.44
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	93.36
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	93.34
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	93.19
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	93.19
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	93.12
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	93.11
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	93.09
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	93.05
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	93.03
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	92.9
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	92.77
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	92.74
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	92.59
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	92.59
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	92.55
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	92.17
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	92.07
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	91.68
d3b60a2	319	Multidrug resistance ABC transporter MsbA, N-termi	91.36
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	91.28
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	91.24
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	91.1
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	91.07
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	91.02
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	90.71
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	90.61
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	90.5
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	90.43
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	89.74
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	89.33
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	89.29
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	89.22
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	89.21
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	89.07
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	88.98
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	88.77
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	87.91
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	87.83
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	87.82
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	87.7
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	87.67
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	87.17
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	86.09
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	86.01
d1tuea_	205	Replication protein E1 helicase domain {Human papi	86.0
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	85.35
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	84.41
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	83.83
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	83.49
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	83.04
d1g5ta_	157	ATP:corrinoid adenosyltransferase CobA {Salmonella	82.96
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	82.87
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	82.85
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	82.65
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	82.63
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	82.16
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	81.73
d2hyda2	323	Putative multidrug export ATP-binding/permease pro	81.49
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	80.92
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	80.69

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=1e-68  Score=515.71  Aligned_cols=220  Identities=53%  Similarity=0.821  Sum_probs=213.7

Q ss_pred             CCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhh
Q 048556          257 IRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIR  336 (478)
Q Consensus       257 ~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r  336 (478)
                      ..++|+|+||+|+|+++ .+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+.+++.+++|
T Consensus        13 ~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr   91 (255)
T d2hyda1          13 KQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR   91 (255)
T ss_dssp             CSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred             CCCEEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhh
Confidence            45789999999999864 46899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556          337 GKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK  416 (478)
Q Consensus       337 ~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~  416 (478)
                      ++|+||||++++|++||+|||+++.+..++++++++++.+++++++..+|+|++|.++++|.+||||||||++|||||++
T Consensus        92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~  171 (255)
T d2hyda1          92 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN  171 (255)
T ss_dssp             HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred             heeeeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      +|+++|||||||+||+.+++.|++.|+++.+++|+|+||||++.++.||||++|++|+|++
T Consensus       172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~  232 (255)
T d2hyda1         172 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVE  232 (255)
T ss_dssp             CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEE
T ss_pred             CCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999888999999999999999999999999999986

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.3e-68  Score=511.36  Aligned_cols=217  Identities=50%  Similarity=0.807  Sum_probs=211.3

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      +|+|+||||+|+++ .+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||+|+.+++.+++|++|
T Consensus         1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i   79 (241)
T d2pmka1           1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV   79 (241)
T ss_dssp             EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred             CeEEEEEEEEeCCC-CcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceE
Confidence            48999999999753 46799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCC
Q 048556          340 GLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR  419 (478)
Q Consensus       340 ~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~  419 (478)
                      +||||+|++|++||+|||.++.+..++++++++++.+++.+++..+|.|++|.++++|.+||||||||++|||||+++|+
T Consensus        80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~  159 (241)
T d2pmka1          80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK  159 (241)
T ss_dssp             EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred             EEEecccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          420 ILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       420 ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      ++|||||||+||+.+++.|++.|+++.+++|+|+||||++.++.||||+||++|+|+|
T Consensus       160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~  217 (241)
T d2pmka1         160 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVE  217 (241)
T ss_dssp             EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEE
T ss_pred             hhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999888999999999999999999999999999987

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=5.4e-67  Score=504.28  Aligned_cols=221  Identities=51%  Similarity=0.828  Sum_probs=212.0

Q ss_pred             CCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhh
Q 048556          257 IRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIR  336 (478)
Q Consensus       257 ~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r  336 (478)
                      ..++|+|+||||+|+++ +.++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|++||+++.+++.+++|
T Consensus        10 ~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r   88 (253)
T d3b60a1          10 ATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR   88 (253)
T ss_dssp             CCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHH
T ss_pred             CceEEEEEEEEEEeCCC-CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhh
Confidence            44689999999999864 46899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEecCCCCCcccHHHHHhcCCC-CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556          337 GKIGLVSQEPVLFTSSIKDNINYGKD-GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL  415 (478)
Q Consensus       337 ~~i~~v~Q~~~lf~~ti~eNl~~~~~-~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall  415 (478)
                      ++|+||||++++|++|+++|+.++.+ ..++++++++++.+++.++++.+|+|++|.++++|.+|||||||||+|||||+
T Consensus        89 ~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~  168 (253)
T d3b60a1          89 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL  168 (253)
T ss_dssp             HTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred             heEEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHh
Confidence            99999999999999999999999974 46889999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556          416 KDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK  478 (478)
Q Consensus       416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~  478 (478)
                      ++|++||||||||+||+.+++.|++.|+++.+++|+|+||||++.++.||+|+||++|+|+++
T Consensus       169 ~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~  231 (253)
T d3b60a1         169 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVER  231 (253)
T ss_dssp             HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEE
T ss_pred             cCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhCCEEEEEECCEEEEE
Confidence            999999999999999999999999999998889999999999999999999999999999873

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-66  Score=501.02  Aligned_cols=222  Identities=40%  Similarity=0.717  Sum_probs=210.8

Q ss_pred             CCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhh
Q 048556          257 IRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIR  336 (478)
Q Consensus       257 ~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r  336 (478)
                      .++.|+|+||||+|+++++.++|+|+||+|++||++||+||||||||||+++|+|+|+|++|+|++||+|+.+++.+++|
T Consensus         8 ~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r   87 (251)
T d1jj7a_           8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLH   87 (251)
T ss_dssp             CCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHH
T ss_pred             ccceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHH
Confidence            45689999999999875556799999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEecCCCCCcccHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556          337 GKIGLVSQEPVLFTSSIKDNINYGK-DGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL  415 (478)
Q Consensus       337 ~~i~~v~Q~~~lf~~ti~eNl~~~~-~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall  415 (478)
                      ++|+||||+|++|++|++||+.++. +..+++++.++++.+++.++++.+|+|++|.++++|.+||||||||++|||||+
T Consensus        88 ~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~  167 (251)
T d1jj7a_          88 RQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALI  167 (251)
T ss_dssp             HHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHT
T ss_pred             HHhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccc
Confidence            9999999999999999999999985 456788999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556          416 KDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRNADLIAVIHQGKLVEK  478 (478)
Q Consensus       416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~  478 (478)
                      ++|+++|||||||+||+.++..|++.|+++.+  ++|+|+||||++.++.||||+||++|+|+++
T Consensus       168 ~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~  232 (251)
T d1jj7a_         168 RKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREG  232 (251)
T ss_dssp             TCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEE
T ss_pred             cCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence            99999999999999999999999999988754  7899999999999999999999999999873

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=9.3e-67  Score=499.44  Aligned_cols=216  Identities=44%  Similarity=0.753  Sum_probs=207.8

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      |+++||||+|++  .+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+++.+++|++|+
T Consensus         2 le~knvsf~Y~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~   79 (242)
T d1mv5a_           2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG   79 (242)
T ss_dssp             EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred             EEEEEEEEECCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheE
Confidence            789999999975  357999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCcccHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCC
Q 048556          341 LVSQEPVLFTSSIKDNINYGK-DGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR  419 (478)
Q Consensus       341 ~v~Q~~~lf~~ti~eNl~~~~-~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~  419 (478)
                      ||||+|++|++|++||+.++. +..++++++++++.+++.+++..+|+|++|.++++|.+||||||||++|||||+++|+
T Consensus        80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~  159 (242)
T d1mv5a_          80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK  159 (242)
T ss_dssp             EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred             EEccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999884 5578899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556          420 ILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK  478 (478)
Q Consensus       420 ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~  478 (478)
                      |+|||||||+||+.+++.+++.|+++.+++|+|+||||++.++.||||+||++|+|+++
T Consensus       160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~  218 (242)
T d1mv5a_         160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGS  218 (242)
T ss_dssp             EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCC
T ss_pred             EEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEECCEEEEE
Confidence            99999999999999999999999998889999999999999999999999999999874

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=2.7e-56  Score=421.56  Aligned_cols=210  Identities=30%  Similarity=0.463  Sum_probs=178.3

Q ss_pred             EEEEeEEEECCCCCC-CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh----
Q 048556          261 IELKDIYFSYPSRPG-EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI----  335 (478)
Q Consensus       261 i~~~~v~~~y~~~~~-~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~----  335 (478)
                      |+++||+++|+.... ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||+++..++.+++    
T Consensus         2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r   81 (230)
T d1l2ta_           2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR   81 (230)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred             EEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhh
Confidence            789999999974321 247999999999999999999999999999999999999999999999999999987765    


Q ss_pred             hcceEEEecCCCCCcc-cHHHHHhcCC-----CCCCHHHHHHHHHHhcHHHHHHhCCCCccc-cccCCCCCCChHHHHHH
Q 048556          336 RGKIGLVSQEPVLFTS-SIKDNINYGK-----DGASIAEIMAAAELANAAKFIDSLPQGLDT-MVGEHGTQLSGGQKQRI  408 (478)
Q Consensus       336 r~~i~~v~Q~~~lf~~-ti~eNl~~~~-----~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t-~~~~~g~~LSgGq~Qrl  408 (478)
                      |++||||||++.+|+. |++||+.++.     +..+.++..+.     +.+.++.+  |+.. .....+.+||||||||+
T Consensus        82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~L~~~~~~~~p~~LSGGqkQRv  154 (230)
T d1l2ta_          82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKR-----ALECLKMA--ELEERFANHKPNQLSGGQQQRV  154 (230)
T ss_dssp             HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHH-----HHHHHHHT--TCCGGGTTCCGGGSCHHHHHHH
T ss_pred             cceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHH-----HHHHHHhh--chhhhhhcCChhhCCHHHHHHH
Confidence            4579999999999976 9999998742     23343333221     22334433  4433 34567789999999999


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          409 AIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-I-NRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       409 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      +|||||+.+|++||||||||+||+.+++.+++.|+++. + ++|+|+|||+++.++.||||++|++|+|++
T Consensus       155 aIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~  225 (230)
T d1l2ta_         155 AIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER  225 (230)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEE
T ss_pred             HHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999874 3 789999999999988899999999999986

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.5e-56  Score=433.01  Aligned_cols=200  Identities=29%  Similarity=0.465  Sum_probs=182.7

Q ss_pred             ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556          259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK  338 (478)
Q Consensus       259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~  338 (478)
                      ..|+|+|++|.+     +|+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|             +
T Consensus        37 ~~i~~~~~~~~g-----~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~   98 (281)
T d1r0wa_          37 NNVSFSHLCLVG-----NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------R   98 (281)
T ss_dssp             ---CHHHHHHTT-----CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------C
T ss_pred             CcEEEEEcCCCC-----CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-------------E
Confidence            356777766532     4899999999999999999999999999999999999999999999987             4


Q ss_pred             eEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCC
Q 048556          339 IGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDP  418 (478)
Q Consensus       339 i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~  418 (478)
                      ++|+||++++|++|++||+.++.. .++.+.+.+++.+.+.+++..+|+|+++.++++|.+||||||||++|||||+++|
T Consensus        99 i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p  177 (281)
T d1r0wa_          99 VSFCSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDA  177 (281)
T ss_dssp             EEEECSSCCCCSEEHHHHHTTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred             EEEEeccccccCceeecccccccc-ccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCc
Confidence            899999999999999999999864 5677888999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHH-HHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          419 RILLLDEATSALDAESERVVQEAL-DKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       419 ~ililDEpts~LD~~~~~~i~~~l-~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      +|||||||||+||+.+++.+++.+ ....+++|+|+||||++.++.||||++|++|+|++
T Consensus       178 ~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~  237 (281)
T d1r0wa_         178 DLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYF  237 (281)
T ss_dssp             SEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEE
T ss_pred             cchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999998864 44456899999999999999999999999999986

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=9.7e-55  Score=412.32  Aligned_cols=206  Identities=28%  Similarity=0.448  Sum_probs=177.6

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      .|+++|++++|++   ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+||+++..++..  ++.|
T Consensus         6 ~I~v~nlsk~yg~---~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~i   80 (239)
T d1v43a3           6 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI   80 (239)
T ss_dssp             CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred             eEEEEEEEEEECC---EEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcc--cceE
Confidence            4999999999963   5799999999999999999999999999999999999999999999999999988754  5789


Q ss_pred             EEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556          340 GLVSQEPVLFTS-SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK  416 (478)
Q Consensus       340 ~~v~Q~~~lf~~-ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~  416 (478)
                      |||||++.+|+. |++||+.++...  .+.++..+.     +.++++.+  |++........+||||||||++|||||+.
T Consensus        81 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSGGq~QRvaiAraL~~  153 (239)
T d1v43a3          81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR-----VRWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVV  153 (239)
T ss_dssp             EEEEC------CCCHHHHHHTTCC--CCCHHHHHHH-----HHHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred             EEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHhhhcc
Confidence            999999999975 999999987632  334443322     34556666  78888889999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIM-I-NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +|++|||||||++||+.+...+++.|+++. + ++|+|+|||+++.+.. ||||++|++|+|++
T Consensus       154 ~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~  217 (239)
T d1v43a3         154 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQ  217 (239)
T ss_dssp             CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred             CCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999999974 3 7999999999999876 99999999999986

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.5e-55  Score=411.71  Aligned_cols=205  Identities=26%  Similarity=0.462  Sum_probs=147.4

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      |+++||+++|++   .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||+++.+.+..  |+.||
T Consensus         1 Iev~nv~k~yg~---~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig   75 (232)
T d2awna2           1 VQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG   75 (232)
T ss_dssp             EEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEE
T ss_pred             CEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchh--hceee
Confidence            689999999963   5799999999999999999999999999999999999999999999999999887754  57899


Q ss_pred             EEecCCCCCcc-cHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556          341 LVSQEPVLFTS-SIKDNINYGKDGA--SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD  417 (478)
Q Consensus       341 ~v~Q~~~lf~~-ti~eNl~~~~~~~--~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~  417 (478)
                      ||||++.+|+. |++||+.++....  +.++..+     .+.+.++.+  |+.........+||||||||++|||||+.+
T Consensus        76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~--~l~~~~~~~~~~LSGGqkQRvaiAraL~~~  148 (232)
T d2awna2          76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQ-----RVNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVAE  148 (232)
T ss_dssp             EECSSCCC---------------------CHHHH-----HHHHHHHHC-----------------------CHHHHHHTC
T ss_pred             eeccccccccchhHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhC--CChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            99999999976 9999999875322  2222211     123344444  455555566789999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          418 PRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       418 ~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |++++|||||++||+.+++.+++.|+++.  .++|+|+|||+++.+.. ||||++|++|+|++
T Consensus       149 P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~  211 (232)
T d2awna2         149 PSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ  211 (232)
T ss_dssp             CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999998874  47999999999998877 99999999999986

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=1.4e-54  Score=408.68  Aligned_cols=200  Identities=31%  Similarity=0.548  Sum_probs=176.6

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      |+++|||++|++    .+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|++||+++.+++..  |+.||
T Consensus         2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig   75 (229)
T d3d31a2           2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA   75 (229)
T ss_dssp             EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred             EEEEEEEEEeCC----EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchh--Hhcce
Confidence            789999999952    489999999999999999999999999999999999999999999999999988765  67899


Q ss_pred             EEecCCCCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556          341 LVSQEPVLFTS-SIKDNINYGKD---GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK  416 (478)
Q Consensus       341 ~v~Q~~~lf~~-ti~eNl~~~~~---~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~  416 (478)
                      ||||++.+|+. |++||+.++..   ....+++.++++.         +  |+.......+.+||||||||++|||||+.
T Consensus        76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~---------~--~l~~~~~~~~~~LSGG~~QRvaiAraL~~  144 (229)
T d3d31a2          76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARD---------L--KIEHLLDRNPLTLSGGEQQRVALARALVT  144 (229)
T ss_dssp             EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHH---------T--TCTTTTTSCGGGSCHHHHHHHHHHHHTTS
T ss_pred             eeccccccCccccHHHHHHHHHhhccccHHHHHHHHHHH---------h--cchhhHhCChhhCCHHHhcchhhhhhhhc
Confidence            99999999986 99999988641   1233444444433         3  55566667788999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +|++||||||||+||+.+.+.+++.|+++.  .+.|+|+|||+++.+.. ||||++|++|++++
T Consensus       145 ~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~  208 (229)
T d3d31a2         145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQ  208 (229)
T ss_dssp             CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEE
T ss_pred             cCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999999874  37899999999998877 99999999999986

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=9.2e-55  Score=412.80  Aligned_cols=210  Identities=28%  Similarity=0.422  Sum_probs=182.3

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC---HHHhh
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ---LKWIR  336 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~---~~~~r  336 (478)
                      .|+++||+++|++. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+   ...+|
T Consensus         3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r   81 (242)
T d1oxxk2           3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED   81 (242)
T ss_dssp             CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred             EEEEEeEEEEECCC-CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhh
Confidence            48999999999642 357999999999999999999999999999999999999999999999999997655   34457


Q ss_pred             cceEEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556          337 GKIGLVSQEPVLFTS-SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA  413 (478)
Q Consensus       337 ~~i~~v~Q~~~lf~~-ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa  413 (478)
                      ++||||||++.||+. |++||+.++...  .+.++..+.     +.+.++.+  |++......+.+||||||||++||||
T Consensus        82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~-----v~~~l~~~--gL~~~~~~~p~~LSGGqkQRvaiARa  154 (242)
T d1oxxk2          82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR-----VEEVAKIL--DIHHVLNHFPRELSGAQQQRVALARA  154 (242)
T ss_dssp             SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHH-----HHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred             ccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHH-----HHHHHhhc--ChHhhhhCChhhCCHHHHhHHHHHhH
Confidence            889999999999987 999999987532  333333322     23455555  77777788899999999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          414 ILKDPRILLLDEATSALDAESERVVQEALDKIM-I-NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |+.+|+++||||||++||+.+...+++.|+++. + +.|+|+|||+++.+.. ||||++|++|+|++
T Consensus       155 L~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~  221 (242)
T d1oxxk2         155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQ  221 (242)
T ss_dssp             HTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred             HhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999999999874 3 7899999999998766 99999999999986

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=2.3e-54  Score=410.37  Aligned_cols=208  Identities=28%  Similarity=0.455  Sum_probs=179.5

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHH----h
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW----I  335 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~----~  335 (478)
                      .|+++||+++|++   .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...    .
T Consensus         3 ~i~v~nl~k~yg~---~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~   79 (240)
T d1g2912           3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK   79 (240)
T ss_dssp             EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred             cEEEEeEEEEECC---EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccc
Confidence            4899999999963   57999999999999999999999999999999999999999999999999997766443    3


Q ss_pred             hcceEEEecCCCCCcc-cHHHHHhcCC--CCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048556          336 RGKIGLVSQEPVLFTS-SIKDNINYGK--DGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR  412 (478)
Q Consensus       336 r~~i~~v~Q~~~lf~~-ti~eNl~~~~--~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lAR  412 (478)
                      |+.|+||||++.+|+. |++||+.++.  ...+.++..+.     +.+.++.+  |+.......+.+||||||||++|||
T Consensus        80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~-----v~~~l~~~--~l~~~~~~~p~~LSGGqkQRv~IAr  152 (240)
T d1g2912          80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR-----VREVAELL--GLTELLNRKPRELSGGQRQRVALGR  152 (240)
T ss_dssp             GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHH-----HHHHHHHH--TCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred             cccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHH-----HHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHH
Confidence            6789999999999987 9999999863  12333443322     22333333  5666667788999999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          413 AILKDPRILLLDEATSALDAESERVVQEALDKIM-I-NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       413 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||+.+|++|||||||++||+.++..+++.|+++. + +.|+|+|||+++.+.. ||||++|++|+|++
T Consensus       153 aL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~  220 (240)
T d1g2912         153 AIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQ  220 (240)
T ss_dssp             HHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred             HHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999874 3 7899999999999877 99999999999986

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.7e-54  Score=409.91  Aligned_cols=210  Identities=35%  Similarity=0.541  Sum_probs=178.1

Q ss_pred             EEEEeEEEECCCCCC-CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHH---hh
Q 048556          261 IELKDIYFSYPSRPG-EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW---IR  336 (478)
Q Consensus       261 i~~~~v~~~y~~~~~-~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~---~r  336 (478)
                      |+++||+++|+.+.. .++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..++.++   +|
T Consensus         2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r   81 (240)
T d3dhwc1           2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR   81 (240)
T ss_dssp             EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred             EEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhh
Confidence            789999999975322 25899999999999999999999999999999999999999999999999999888655   46


Q ss_pred             cceEEEecCCCCCcc-cHHHHHhcCC--CCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556          337 GKIGLVSQEPVLFTS-SIKDNINYGK--DGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA  413 (478)
Q Consensus       337 ~~i~~v~Q~~~lf~~-ti~eNl~~~~--~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa  413 (478)
                      ++||||||++.+|+. |++||+.++.  ...+.++..+.     +.++++.+  |++......+.+||||||||++||||
T Consensus        82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~-----v~~~L~~v--gL~~~~~~~~~~LSGG~~QRvaiAra  154 (240)
T d3dhwc1          82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR-----VTELLSLV--GLGDKHDSYPSNLSGGQKQRVAIARA  154 (240)
T ss_dssp             HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHH-----HHHHHHHH--STTTTTSSCBSCCCHHHHHHHHHHHH
T ss_pred             ccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchhhhCChhhCCHHHHHHHHHhhh
Confidence            789999999999986 9999998752  11222222211     12223322  55555667788999999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          414 ILKDPRILLLDEATSALDAESERVVQEALDKIM-I-NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |+.+|++|||||||++||+.++..+++.|+++. + +.|+|+|||++..+.. ||||++|++|+|++
T Consensus       155 L~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~  221 (240)
T d3dhwc1         155 LASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE  221 (240)
T ss_dssp             HHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEE
T ss_pred             hccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999999999874 3 7899999999999877 99999999999987

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=7.2e-52  Score=395.38  Aligned_cols=209  Identities=25%  Similarity=0.413  Sum_probs=177.3

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhc-c
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRG-K  338 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~-~  338 (478)
                      -++++|++++|++   .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+.+..++ .
T Consensus         6 ~Lev~~l~k~yg~---~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g   82 (240)
T d1ji0a_           6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG   82 (240)
T ss_dssp             EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred             EEEEeeEEEEECC---EEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhc
Confidence            4899999999963   57999999999999999999999999999999999999999999999999999988777644 4


Q ss_pred             eEEEecCCCCCcc-cHHHHHhcCCCCC-CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556          339 IGLVSQEPVLFTS-SIKDNINYGKDGA-SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK  416 (478)
Q Consensus       339 i~~v~Q~~~lf~~-ti~eNl~~~~~~~-~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~  416 (478)
                      ++|+||++.+|+. |++||+.++.... ..++..+..+.     .+..+ .+++........+||||||||++|||||+.
T Consensus        83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~  156 (240)
T d1ji0a_          83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEW-----IFSLF-PRLKERLKQLGGTLSGGEQQMLAIGRALMS  156 (240)
T ss_dssp             EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHH-----HHHHC-HHHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred             ccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHH-----HHHHh-hChHHHHhCchhhCCHHHHHHHHHHHHHHh
Confidence            9999999999987 9999998864222 22233322221     11111 134455566678999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +|++|||||||++||+.+++.+++.|+++. +++|+|++||+++.+.. ||||++|++|++++
T Consensus       157 ~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~  219 (240)
T d1ji0a_         157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVL  219 (240)
T ss_dssp             CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred             CCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999999885 57899999999998766 99999999999985

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=7.3e-52  Score=398.89  Aligned_cols=208  Identities=31%  Similarity=0.543  Sum_probs=176.0

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC--------
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ--------  331 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~--------  331 (478)
                      .|+++||+++|++   .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||+++...+        
T Consensus         2 ~Lev~nl~k~yg~---~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~   78 (258)
T d1b0ua_           2 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV   78 (258)
T ss_dssp             CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred             eEEEEEEEEEECC---EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhccc
Confidence            4899999999953   57999999999999999999999999999999999999999999999999986543        


Q ss_pred             -----HHHhhcceEEEecCCCCCcc-cHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCccccc-cCCCCCCC
Q 048556          332 -----LKWIRGKIGLVSQEPVLFTS-SIKDNINYGK---DGASIAEIMAAAELANAAKFIDSLPQGLDTMV-GEHGTQLS  401 (478)
Q Consensus       332 -----~~~~r~~i~~v~Q~~~lf~~-ti~eNl~~~~---~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~-~~~g~~LS  401 (478)
                           ...+|++||||||++.+|+. |++||+.++.   ...+.++..+.     ..+.++.+  |+.... ...+.+||
T Consensus        79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~p~~LS  151 (258)
T d1b0ua_          79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARER-----ALKYLAKV--GIDERAQGKYPVHLS  151 (258)
T ss_dssp             SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHH-----HHHHHHHT--TCCHHHHTSCGGGSC
T ss_pred             ccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHH-----HHHHHHHc--CCchhhhccCccccc
Confidence                 23567889999999999986 9999998752   22333333221     22344444  444332 34467899


Q ss_pred             hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       402 gGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      |||+||++|||||+.+|+++||||||++||+.+.+.|++.|+++. +++|+|+|||+++.+.. ||||+||++|+|++
T Consensus       152 GG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~  229 (258)
T d1b0ua_         152 GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE  229 (258)
T ss_dssp             HHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999999999999999999999876 46899999999999877 99999999999986

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.3e-51  Score=397.33  Aligned_cols=207  Identities=23%  Similarity=0.405  Sum_probs=179.0

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc-e
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK-I  339 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~-i  339 (478)
                      ++++|||++|++   .++|+||||++++||++||+||||||||||+++|+|+++|++|+|.++|+++...++.++++. |
T Consensus         5 L~v~nlsk~yg~---~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi   81 (254)
T d1g6ha_           5 LRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI   81 (254)
T ss_dssp             EEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred             EEEEEEEEEECC---eEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcC
Confidence            799999999963   579999999999999999999999999999999999999999999999999999998876554 9


Q ss_pred             EEEecCCCCCcc-cHHHHHhcCCCCC---------------CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChH
Q 048556          340 GLVSQEPVLFTS-SIKDNINYGKDGA---------------SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGG  403 (478)
Q Consensus       340 ~~v~Q~~~lf~~-ti~eNl~~~~~~~---------------~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgG  403 (478)
                      +|+||++.+|+. |++||+.++....               .+++..     ..+.+.++.+  |++........+||||
T Consensus        82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG  154 (254)
T d1g6ha_          82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV-----EKAFKILEFL--KLSHLYDRKAGELSGG  154 (254)
T ss_dssp             EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHH-----HHHHHHHHHT--TCGGGTTSBGGGSCHH
T ss_pred             CccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHH-----HHHHHHHHhc--CcchhccCchhhCCcH
Confidence            999999999976 9999999863211               111111     1123344444  5666666778899999


Q ss_pred             HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          404 QKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       404 q~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      ||||++|||||+.+|++|||||||++||+.+.+.+++.|+++. +++|+|+|||+++.+.. ||||+||++|+|++
T Consensus       155 ~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~  230 (254)
T d1g6ha_         155 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA  230 (254)
T ss_dssp             HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred             HHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEE
Confidence            9999999999999999999999999999999999999998875 57999999999998765 99999999999985

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.9e-51  Score=390.42  Aligned_cols=208  Identities=28%  Similarity=0.448  Sum_probs=181.4

Q ss_pred             ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556          259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK  338 (478)
Q Consensus       259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~  338 (478)
                      |.|+++|++++|.+   +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+. ....|+.
T Consensus         1 gaI~v~nl~k~yg~---~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-~~~~~~~   76 (238)
T d1vpla_           1 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKL   76 (238)
T ss_dssp             CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTT
T ss_pred             CCEEEEeEEEEECC---EEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccC-hHHHHhh
Confidence            46999999999963   5899999999999999999999999999999999999999999999999999874 4567999


Q ss_pred             eEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556          339 IGLVSQEPVLFTS-SIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL  415 (478)
Q Consensus       339 i~~v~Q~~~lf~~-ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall  415 (478)
                      ++|+||++.+|+. |++||+.+...  ..+.+++.+..+     +.++.+  |++....+...+||||||||++|||||+
T Consensus        77 i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~lSgG~~qrv~iA~al~  149 (238)
T d1vpla_          77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVE-----RATEIA--GLGEKIKDRVSTYSKGMVRKLLIARALM  149 (238)
T ss_dssp             EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHH-----HHHHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred             EeEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHH-----HHHHhC--CCHHHHhhhhhhCCHHHHHHHHHHHHHh
Confidence            9999999999987 99999976531  224445444332     223333  6677777888999999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          416 KDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      .+|+++||||||++||+.+++.+++.|+++. +++|+|++||+++.+.. ||||++|++|++++
T Consensus       150 ~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~  213 (238)
T d1vpla_         150 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVE  213 (238)
T ss_dssp             TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEE
T ss_pred             cCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999998875 57999999999999886 99999999999975

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=5e-50  Score=379.28  Aligned_cols=201  Identities=30%  Similarity=0.499  Sum_probs=174.9

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      +++ ++.++|.+    ..+ |+||+++ ||+++|+||||||||||+++|+|+++|++|+|.+||+++.+++..  |+.||
T Consensus         3 l~v-~~~k~~g~----~~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig   73 (240)
T d2onka1           3 LKV-RAEKRLGN----FRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG   73 (240)
T ss_dssp             EEE-EEEEEETT----EEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCB
T ss_pred             EEE-EEEEEECC----EEE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHH--HcCce
Confidence            455 56777753    223 8999995 689999999999999999999999999999999999999988754  68899


Q ss_pred             EEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCC
Q 048556          341 LVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR  419 (478)
Q Consensus       341 ~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~  419 (478)
                      ||||++.+|+. |++||+.++....+.++..+     .+.+.++.+  |+.......+.+||||||||++|||||+.+|+
T Consensus        74 ~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~-----~v~~~l~~~--gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~  146 (240)
T d2onka1          74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDR-----RVREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPR  146 (240)
T ss_dssp             CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHH-----HHHHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred             eeccchhhcccchhhHhhhhhhcccCHHHHHH-----HHHHHHHhc--CcHhhhhCChhhCCHHHHHHHHHHHHHhccCC
Confidence            99999999986 99999999865555544432     234566666  78888889999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          420 ILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       420 ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                      +++||||||+||+.++..+++.|+++.+  +.|+|+|||+++.+.. ||||++|++|++++
T Consensus       147 illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~  207 (240)
T d2onka1         147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVE  207 (240)
T ss_dssp             SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred             ceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999998753  7899999999998877 99999999999986

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4e-46  Score=354.13  Aligned_cols=198  Identities=24%  Similarity=0.386  Sum_probs=172.2

Q ss_pred             EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556          261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG  340 (478)
Q Consensus       261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  340 (478)
                      ++++||+++|       +|+||||+|++||++||+||||||||||+++|+|++ |++|+|.++|+++..++...++...+
T Consensus         4 l~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~   75 (231)
T d1l7vc_           4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA   75 (231)
T ss_dssp             EEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred             EEEECcccCc-------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhce
Confidence            7899997544       699999999999999999999999999999999986 68899999999999999999999999


Q ss_pred             EEecCCCC-CcccHHHHHhcCCCCCCHHH-HHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC--
Q 048556          341 LVSQEPVL-FTSSIKDNINYGKDGASIAE-IMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK--  416 (478)
Q Consensus       341 ~v~Q~~~l-f~~ti~eNl~~~~~~~~~~~-~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~--  416 (478)
                      |++|+... |..++.+|+.++..+....+ +.++++         .+  |++..++....+||||||||++|||||++  
T Consensus        76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---------~~--~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~  144 (231)
T d1l7vc_          76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAG---------AL--ALDDKLGRSTNQLSGGEWQRVRLAAVVLQIT  144 (231)
T ss_dssp             EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHH---------HT--TCTTTTTSBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred             eeeccccCCccccHHHHhhhccchhhHHHHHHHHHH---------hc--CCHhHhCcChhhcCHHHHHHHHHHHHHHhhC
Confidence            99998764 66799999998765544333 333333         33  56667778888999999999999999997  


Q ss_pred             -----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556          417 -----DPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE  477 (478)
Q Consensus       417 -----~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  477 (478)
                           +|+++||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||||++|++|++++
T Consensus       145 p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~  212 (231)
T d1l7vc_         145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLA  212 (231)
T ss_dssp             TTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECC
T ss_pred             cccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEE
Confidence                 679999999999999999999999999874 57899999999997655 99999999999986

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=2.1e-45  Score=341.84  Aligned_cols=191  Identities=25%  Similarity=0.469  Sum_probs=156.7

Q ss_pred             cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556          260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI  339 (478)
Q Consensus       260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i  339 (478)
                      .|+++|+||+|+    +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+     .+.++
T Consensus         2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i   72 (200)
T d1sgwa_           2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKI   72 (200)
T ss_dssp             EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGE
T ss_pred             eEEEEEEEEEeC----CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhH-----hcCcE
Confidence            489999999994    379999999999999999999999999999999999999999999999999864     57889


Q ss_pred             EEEecCCCCCcc-cHHHHHhcC----CCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 048556          340 GLVSQEPVLFTS-SIKDNINYG----KDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI  414 (478)
Q Consensus       340 ~~v~Q~~~lf~~-ti~eNl~~~----~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal  414 (478)
                      +|+||++.++.. |+.||+.+.    ....+.+++.++++..++.        +++    ++..+||||||||++|||||
T Consensus        73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~----~~~~~LSgG~~qrv~ia~al  140 (200)
T d1sgwa_          73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL--------DLK----KKLGELSQGTIRRVQLASTL  140 (200)
T ss_dssp             EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC--------CTT----SBGGGSCHHHHHHHHHHHHT
T ss_pred             EEEeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCc--------ccc----cccCcCCCcHHHHHHHHHHH
Confidence            999999988876 999998643    2345666776665443221        122    34457999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeC
Q 048556          415 LKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQ  472 (478)
Q Consensus       415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~  472 (478)
                      +.+|+++||||||++||+.+++.+++.|.+..+++++++++|+ +.+..||++.+|.+
T Consensus       141 ~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~-~~l~~~D~~~~l~~  197 (200)
T d1sgwa_         141 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR-EELSYCDVNENLHK  197 (200)
T ss_dssp             TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEES-SCCTTSSEEEEGGG
T ss_pred             hcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEe-chhhhcchhhheee
Confidence            9999999999999999999999999999887654333333333 13457999988753

>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Multidrug resistance ABC transporter MsbA, N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.95  E-value=4.8e-26  Score=221.40  Aligned_cols=240  Identities=16%  Similarity=0.280  Sum_probs=228.7

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556            3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL   82 (478)
Q Consensus         3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (478)
                      +..+.+.++..++|.++|+|++++|..+|+++ ++|++++|+++|++.+.+.+...+...+..++.++++++++++.+|.
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~-~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  157 (319)
T d3b60a2          79 CISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQ  157 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             hhhhhhhccccchhhHHHHhhcccchhhcccc-ccccccccccccccccccccccccchhhhhhhhhhhHHHHHHhhhcc
Confidence            46678899999999999999999999999998 89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL  162 (478)
Q Consensus        83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  162 (478)
                      +++++++++|+..++..++.++..+..++.++..++..+.+.|.++|++++|.++.|+.+.+++++..++..+...+..+
T Consensus       158 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  237 (319)
T d3b60a2         158 LSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVS  237 (319)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHhhcCCceeeehhccchhhhhhhhhhhhhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556          163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP  242 (478)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~  242 (478)
                      ..+.......++..+..++++++|++++.+|.+|+|+++++..+...+..|+..+.+.+..++++.+|.+|+.+++|.+|
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~  317 (319)
T d3b60a2         238 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ  317 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHhcccchhhhhhhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             C
Q 048556          243 L  243 (478)
Q Consensus       243 ~  243 (478)
                      |
T Consensus       318 E  318 (319)
T d3b60a2         318 E  318 (319)
T ss_dssp             S
T ss_pred             C
Confidence            5

>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.95  E-value=1.4e-26  Score=225.91  Aligned_cols=240  Identities=17%  Similarity=0.148  Sum_probs=227.1

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556            3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL   82 (478)
Q Consensus         3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (478)
                      +..+.+.++..++|.++|+|++++|+++|+++ ++|++++|+++|++.+++.+...+...+..++.+++.++++++.+|.
T Consensus        84 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~  162 (323)
T d2hyda2          84 LAQWTSNKILYDIRKKLYNHLQALSARFYANN-QVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVK  162 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTS-CHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHhhhHHHHHHHhhhhhcccccccccc-cccccccccchhhhhhccchhhhhhhcchhhhhhhhhhhhhhhhhhh
Confidence            45678889999999999999999999999998 89999999999999999999988888888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL  162 (478)
Q Consensus        83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  162 (478)
                      ++++.++..|+..++..++.++.++..++.++..++..+.+.|.++|+++||.++.|+.+.++|++..+++.+...+..+
T Consensus       163 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~  242 (323)
T d2hyda2         163 LTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTR  242 (323)
T ss_dssp             THHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCCchhhhHhhhccchhhhhcccccccchhhHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556          163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP  242 (478)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~  242 (478)
                      ..........++..+..++++++|++++.+|.+|+|+++++..+......|+..+...+..++++.++.+|+.+++|++|
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e~  322 (323)
T d2hyda2         243 WNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDY  322 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             hhhhccccccccchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            99999999999999999999999999999999999999999999888889999999999999999999999999998765


Q ss_pred             C
Q 048556          243 L  243 (478)
Q Consensus       243 ~  243 (478)
                      |
T Consensus       323 e  323 (323)
T d2hyda2         323 D  323 (323)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.79  E-value=2.6e-21  Score=173.83  Aligned_cols=156  Identities=15%  Similarity=0.084  Sum_probs=105.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHH
Q 048556          291 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIM  370 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~  370 (478)
                      +++|+||||||||||++.++|.++|+.|.+..++.+....+...........++...++..+..++...+......+   
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   78 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQ---   78 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHH---
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhcCcc---
Confidence            58999999999999999999999999999999887755443222111122223333333333333322222111111   


Q ss_pred             HHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CC
Q 048556          371 AAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--IN  448 (478)
Q Consensus       371 ~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~  448 (478)
                                                ...+|+|+++|.++++++.++|+++++|||+...+  ....+.+.+.+..  .+
T Consensus        79 --------------------------~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~~~~  130 (178)
T d1ye8a1          79 --------------------------YFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMHDPN  130 (178)
T ss_dssp             --------------------------HHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHTCTT
T ss_pred             --------------------------hhhhhhhhhHHHHHHHHHhcCCCceeecCCCccch--hhHHHHHHHHHHhccCC
Confidence                                      12478999999999999999999999999865443  2334555555443  36


Q ss_pred             CeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556          449 RTTVIVAHRLSTVRNADLIAVIHQGKLVE  477 (478)
Q Consensus       449 ~t~i~itH~~~~~~~~d~i~vl~~G~i~~  477 (478)
                      +|+|+++|+.+....+|++..+++|++++
T Consensus       131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~  159 (178)
T d1ye8a1         131 VNVVATIPIRDVHPLVKEIRRLPGAVLIE  159 (178)
T ss_dssp             SEEEEECCSSCCSHHHHHHHTCTTCEEEE
T ss_pred             CEEEEEEccHHHHHhhceEEEEeCCEEEE
Confidence            89999999998888899999999999864

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=2.8e-13  Score=136.54  Aligned_cols=73  Identities=19%  Similarity=0.294  Sum_probs=62.3

Q ss_pred             CCCChHHHHHHHHHHH----HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchhhhhcCEEEEE
Q 048556          398 TQLSGGQKQRIAIARA----ILKDPRILLLDEATSALDAESERVVQEALDKIMI-NRTTVIVAHRLSTVRNADLIAVI  470 (478)
Q Consensus       398 ~~LSgGq~Qrl~lARa----ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~~d~i~vl  470 (478)
                      ..+|||||.+++||-.    .+.++|+++||||+++||+.+...+.+.|++... +.-+|+|||++.++..||+++.+
T Consensus       331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V  408 (427)
T d1w1wa_         331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV  408 (427)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred             hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhcccEEEE
Confidence            5679999999877643    3567889999999999999999999999988753 44599999999999999998755

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.44  E-value=5.4e-13  Score=129.26  Aligned_cols=76  Identities=25%  Similarity=0.364  Sum_probs=66.6

Q ss_pred             CCCChHHHHHHHHHHH----HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEE--Ee
Q 048556          398 TQLSGGQKQRIAIARA----ILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAV--IH  471 (478)
Q Consensus       398 ~~LSgGq~Qrl~lARa----ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~v--l~  471 (478)
                      ..+|+||++.+.++..    ...+|+++++|||-++|+|...+.+.+.|+...++.-+|++||++..+..+|+++.  ++
T Consensus       218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~  297 (308)
T d1e69a_         218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMV  297 (308)
T ss_dssp             GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEES
T ss_pred             hhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhcccEEEEEEe
Confidence            4689999999877664    34467899999999999999999999999998878889999999999999999965  67


Q ss_pred             CC
Q 048556          472 QG  473 (478)
Q Consensus       472 ~G  473 (478)
                      +|
T Consensus       298 ~g  299 (308)
T d1e69a_         298 NG  299 (308)
T ss_dssp             SS
T ss_pred             CC
Confidence            77

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.88  E-value=4.3e-05  Score=69.54  Aligned_cols=47  Identities=15%  Similarity=0.232  Sum_probs=35.0

Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hc-CCCeEEEEecCchhhh
Q 048556          416 KDPRILLLDEATSALDAESERVVQEALDK-IM-INRTTVIVAHRLSTVR  462 (478)
Q Consensus       416 ~~~~ililDEpts~LD~~~~~~i~~~l~~-~~-~~~t~i~itH~~~~~~  462 (478)
                      .+..++|+||...+-|+.....+...+.+ +. .+.+++++||..+...
T Consensus       113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~  161 (224)
T d1ewqa2         113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA  161 (224)
T ss_dssp             CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred             CCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence            44569999999999999877666665533 32 3678999999876644

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=1.4e-07  Score=82.31  Aligned_cols=161  Identities=13%  Similarity=0.009  Sum_probs=76.5

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCC------C
Q 048556          290 TTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKD------G  363 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~------~  363 (478)
                      ..|.|+||+|+|||||++.+++.+....+.+.+.+.+...............+.++...+.....++.....+      .
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYV   81 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSSSE
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccccccccccccccccccchhhhhhhhhhhhhhhhhcccccccc
Confidence            3588999999999999999999998776666554443322111111111222222222111111111111110      1


Q ss_pred             CCHHHHHHHHHHhcHHHHHHh-CCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEE-eCCCCCCCHHHHHHHHHH
Q 048556          364 ASIAEIMAAAELANAAKFIDS-LPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLL-DEATSALDAESERVVQEA  441 (478)
Q Consensus       364 ~~~~~~~~a~~~~~~~~~i~~-lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ilil-DEpts~LD~~~~~~i~~~  441 (478)
                      ...+++......  ..+.+.. ...+.+..+.+.....+......+.+.+.++..|+++++ |.|...=.+   ..+.+.
T Consensus        82 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  156 (189)
T d2i3ba1          82 VDLTSFEQLALP--VLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKP---LALVEE  156 (189)
T ss_dssp             ECHHHHHTTTTT--TTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSC---CTTHHH
T ss_pred             ccHHHHHHHHHH--HHHHHHHHhhcCCCeeEeeccccchhhhHHHHHHHHHHhccCceEEEeccccCCcch---HHHHHH
Confidence            112222111000  0011111 122344555555556666777778888888887766554 444332211   233344


Q ss_pred             HHHhcCCCeEEEEec
Q 048556          442 LDKIMINRTTVIVAH  456 (478)
Q Consensus       442 l~~~~~~~t~i~itH  456 (478)
                      +++ .++.+++.+|.
T Consensus       157 ~~~-~~~~~~~~lt~  170 (189)
T d2i3ba1         157 IRN-RKDVKVFNVTK  170 (189)
T ss_dssp             HHT-TCCSEEEECCS
T ss_pred             HhC-CCCCeEEEECh
Confidence            443 34566666654

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.75  E-value=0.00012  Score=67.00  Aligned_cols=46  Identities=13%  Similarity=0.170  Sum_probs=33.0

Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhc-C-CCeEEEEecCchhh
Q 048556          416 KDPRILLLDEATSALDAESERVVQEA-LDKIM-I-NRTTVIVAHRLSTV  461 (478)
Q Consensus       416 ~~~~ililDEpts~LD~~~~~~i~~~-l~~~~-~-~~t~i~itH~~~~~  461 (478)
                      .+..++|+||+.++-|+.....+..+ ++.+. + .+.++++||.....
T Consensus       119 ~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~  167 (234)
T d1wb9a2         119 TEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT  167 (234)
T ss_dssp             CTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred             ccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHh
Confidence            34569999999999999988777655 44442 3 45778888876543

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=97.68  E-value=0.00013  Score=67.80  Aligned_cols=35  Identities=26%  Similarity=0.260  Sum_probs=28.4

Q ss_pred             cccccceeeecCCCEEEEEcCCCCChHHHHHHHhc
Q 048556          277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      +.|+++--=+.+|+.+.|.|++|+||||++.-++-
T Consensus        23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             hhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            44565544489999999999999999999877764

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.58  E-value=7.6e-06  Score=71.89  Aligned_cols=26  Identities=35%  Similarity=0.463  Sum_probs=23.8

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhccCC
Q 048556          289 GTTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       289 G~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      |.++.|+||||||||||.+.|...++
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            89999999999999999999987664

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.37  E-value=3.6e-05  Score=66.13  Aligned_cols=27  Identities=26%  Similarity=0.326  Sum_probs=24.6

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      ++|-+|.|+|++||||||+.+.|+..+
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L   30 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTL   30 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            578999999999999999999999665

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=2.3e-05  Score=66.93  Aligned_cols=26  Identities=23%  Similarity=0.284  Sum_probs=22.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCCCC
Q 048556          291 TAALVGQSGSGKSTVISLIERFYDPQ  316 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~~~  316 (478)
                      +++|+|++|||||||++-|...+...
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~~   29 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCAR   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence            68999999999999999998766543

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.36  E-value=4.2e-05  Score=65.64  Aligned_cols=35  Identities=29%  Similarity=0.429  Sum_probs=27.5

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECC
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG  324 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g  324 (478)
                      .|+++.|.||+||||||+.+.|...+...  -+.+++
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~--~~~~~~   37 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPGVP--KVHFHS   37 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSSSC--EEEECT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCC--EEEecH
Confidence            58899999999999999999998865321  244554

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.32  E-value=0.0004  Score=62.24  Aligned_cols=28  Identities=32%  Similarity=0.484  Sum_probs=18.2

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      +...++++|||+|+||||.+--|+..+.
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~   37 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYK   37 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4556799999999999988777765553

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.32  E-value=5.8e-05  Score=68.48  Aligned_cols=34  Identities=29%  Similarity=0.445  Sum_probs=26.5

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccCCCCccEEE
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL  321 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~  321 (478)
                      +|++.+++|+||.|||||+|.|.+-..-.-|+|.
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs  127 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS  127 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence            5999999999999999999999987766667765

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.29  E-value=0.00026  Score=59.15  Aligned_cols=31  Identities=29%  Similarity=0.205  Sum_probs=22.9

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccCCCCccEEEEC
Q 048556          290 TTAALVGQSGSGKSTVISLIERFYDPQAGEVLID  323 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~  323 (478)
                      +.+.|+||+|||||||++.|..-.   .|...++
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~   33 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNIN   33 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS---TTEEEEC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC---CCCEEec
Confidence            468899999999999999775432   2455443

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.26  E-value=0.00052  Score=59.39  Aligned_cols=26  Identities=35%  Similarity=0.367  Sum_probs=22.6

Q ss_pred             ecCCCEEEEEcCCCCChHHHHHHHhc
Q 048556          286 IPSGTTAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       286 i~~G~~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      -++-+.+.++|++||||||+.+-++.
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            46678999999999999999998853

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=0.00059  Score=62.98  Aligned_cols=45  Identities=16%  Similarity=0.200  Sum_probs=30.4

Q ss_pred             HHcCCCCEEEEeCCCCCC-----CHHHHHHHHHHHHHhc--CCCeEEEEecC
Q 048556          413 AILKDPRILLLDEATSAL-----DAESERVVQEALDKIM--INRTTVIVAHR  457 (478)
Q Consensus       413 all~~~~ililDEpts~L-----D~~~~~~i~~~l~~~~--~~~t~i~itH~  457 (478)
                      .-..+|+++++|--++-.     |......+...++++.  .++|+|++.|-
T Consensus       128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~  179 (274)
T d1nlfa_         128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA  179 (274)
T ss_dssp             HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred             HhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence            345789999999654321     4445556777776654  37899999883

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.18  E-value=9.2e-05  Score=63.35  Aligned_cols=28  Identities=29%  Similarity=0.606  Sum_probs=25.0

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      ++|-.++|.||+||||||+.+.|+.-+.
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence            5788899999999999999999987653

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=7.9e-05  Score=63.70  Aligned_cols=27  Identities=37%  Similarity=0.401  Sum_probs=24.5

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +++.++.|.||+||||||+.+.|+.-+
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            568899999999999999999998765

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=7.1e-05  Score=67.11  Aligned_cols=49  Identities=24%  Similarity=0.347  Sum_probs=36.2

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccCC--------------CCccEEEECCeecCCCCHHHhhcc
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFYD--------------PQAGEVLIDGVNLKEFQLKWIRGK  338 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~--------------~~~G~i~~~g~~~~~~~~~~~r~~  338 (478)
                      .|.++.|+||||||||||.+.|...++              |-.|+  .||+|..-++.+++.+.
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E--~~G~dY~Fvs~~~F~~~   63 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGE--VHGEHYFFVNHDEFKEM   63 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccc--cccccceeecHHHHHHH
Confidence            489999999999999999998865432              23354  37777766777766544

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.13  E-value=0.00029  Score=63.84  Aligned_cols=34  Identities=15%  Similarity=0.236  Sum_probs=27.2

Q ss_pred             ccccceee--ecCCCEEEEEcCCCCChHHHHHHHhcc
Q 048556          278 IFNGFSLS--IPSGTTAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       278 ~l~~is~~--i~~G~~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      -|+.+ +.  +++|..+.|.||+|||||||+.-++--
T Consensus        14 ~LD~~-l~GGi~~gsl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          14 RLDEM-CGGGFFKDSIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             HHHHH-TTSSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             HHHHh-hcCCCcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            34444 34  889999999999999999998776554

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.12  E-value=0.00011  Score=62.83  Aligned_cols=26  Identities=23%  Similarity=0.344  Sum_probs=23.8

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhccCC
Q 048556          289 GTTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       289 G~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      .++|.|.|++||||||+.+.|...+.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999999875

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.07  E-value=7.6e-05  Score=64.18  Aligned_cols=24  Identities=29%  Similarity=0.573  Sum_probs=22.0

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccC
Q 048556          290 TTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      ..|+|.||+|||||||++.|+..+
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999999876

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.05  E-value=0.00012  Score=63.96  Aligned_cols=25  Identities=24%  Similarity=0.311  Sum_probs=22.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCCC
Q 048556          291 TAALVGQSGSGKSTVISLIERFYDP  315 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~~  315 (478)
                      +|||.||+|||||||.+.|...+..
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l~~   48 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTLRE   48 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcc
Confidence            6999999999999999999876653

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.00012  Score=61.57  Aligned_cols=23  Identities=35%  Similarity=0.443  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .+.|+||+||||||+.+.|+-.+
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999998765

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.03  E-value=0.00034  Score=67.00  Aligned_cols=38  Identities=32%  Similarity=0.459  Sum_probs=32.6

Q ss_pred             eecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556          285 SIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI  322 (478)
Q Consensus       285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~  322 (478)
                      -++.|.-+.|.||+||||||+++.|++.++|+.=-|.+
T Consensus       162 ~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti  199 (323)
T d1g6oa_         162 GIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI  199 (323)
T ss_dssp             HHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred             HHHhCCCEEEEeeccccchHHHHHHhhhcccccceeec
Confidence            35667779999999999999999999999887666666

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.03  E-value=0.00011  Score=63.23  Aligned_cols=31  Identities=16%  Similarity=0.200  Sum_probs=25.7

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhccCCCCccE
Q 048556          289 GTTAALVGQSGSGKSTVISLIERFYDPQAGE  319 (478)
Q Consensus       289 G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~  319 (478)
                      +.+++|.|++||||||+.+.|...+.....+
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~   31 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVN   31 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHcCCC
Confidence            3689999999999999999998877654433

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.01  E-value=0.00024  Score=61.63  Aligned_cols=39  Identities=38%  Similarity=0.491  Sum_probs=28.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC------------CCCccEEEECCeecCC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY------------DPQAGEVLIDGVNLKE  329 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~------------~~~~G~i~~~g~~~~~  329 (478)
                      +|||+|++|+|||||++.|+|--            .+..|.+.++|.++..
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~   60 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVF   60 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeee
Confidence            68999999999999999998753            2234556666655433

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.01  E-value=0.0014  Score=60.35  Aligned_cols=29  Identities=21%  Similarity=0.206  Sum_probs=23.8

Q ss_pred             ecCCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556          286 IPSGTTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       286 i~~G~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      +++...+.+.||+|||||++++.++..+.
T Consensus        42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~   70 (256)
T d1lv7a_          42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAK   70 (256)
T ss_dssp             -CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence            33445688999999999999999998764

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.01  E-value=0.00011  Score=62.93  Aligned_cols=27  Identities=22%  Similarity=0.162  Sum_probs=23.3

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccCCCC
Q 048556          290 TTAALVGQSGSGKSTVISLIERFYDPQ  316 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~~~~  316 (478)
                      .+++|+|++|||||||++-|...+...
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~   28 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVRE   28 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence            478999999999999999888777653

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.00  E-value=0.00014  Score=61.75  Aligned_cols=25  Identities=28%  Similarity=0.365  Sum_probs=22.3

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccCC
Q 048556          290 TTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      ..+.|+||+||||||+++.|+..+.
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~   27 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD   27 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC
Confidence            3689999999999999999998764

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.99  E-value=0.0011  Score=61.55  Aligned_cols=30  Identities=17%  Similarity=0.299  Sum_probs=25.6

Q ss_pred             eecCCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556          285 SIPSGTTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      -+++..-+.+.||+|+|||+|++.+++.+.
T Consensus        37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             CCCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence            355566799999999999999999998873

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.99  E-value=0.00013  Score=62.07  Aligned_cols=23  Identities=26%  Similarity=0.304  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .++|+||+||||||+.+.|+--+
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999997655

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.98  E-value=6.4e-05  Score=68.41  Aligned_cols=34  Identities=29%  Similarity=0.441  Sum_probs=22.8

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccCCCCccEEE
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL  321 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~  321 (478)
                      +|++.+++|+||.|||||+|.|.+-..-.-|+|.
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs  129 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS  129 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence            5889999999999999999999997766667776

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=7.7e-05  Score=65.15  Aligned_cols=27  Identities=41%  Similarity=0.564  Sum_probs=24.0

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      +|-+|.|+|++||||||+.+.|+..+.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~   44 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLV   44 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            577999999999999999999987653

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=1.7e-05  Score=69.44  Aligned_cols=33  Identities=24%  Similarity=0.355  Sum_probs=27.8

Q ss_pred             cccceeeecCCCEEEEEcCCCCChHHHHHHHhcc
Q 048556          279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       279 l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++.++++.+| ++.|+|||||||||++.+|.-.
T Consensus        15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~   47 (222)
T d1qhla_          15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA   47 (222)
T ss_dssp             EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred             EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence            46677788776 9999999999999999999643

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.84  E-value=0.00028  Score=61.67  Aligned_cols=27  Identities=33%  Similarity=0.656  Sum_probs=24.4

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      ++|-.+.|+||+||||||+.+.|+--|
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence            578899999999999999999999654

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.0036  Score=55.73  Aligned_cols=32  Identities=25%  Similarity=0.415  Sum_probs=24.1

Q ss_pred             eeeecCCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556          283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       283 s~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      +++-++-.++++|||+|+||||.+--|+..+.
T Consensus         3 ~~~~~~p~vi~lvGptGvGKTTTiAKLA~~~~   34 (211)
T d2qy9a2           3 NVEGKAPFVILMVGVNGVGKTTTIGKLARQFE   34 (211)
T ss_dssp             CCCSCTTEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34444446899999999999988777776665

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.82  E-value=0.00024  Score=62.29  Aligned_cols=26  Identities=31%  Similarity=0.396  Sum_probs=23.0

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +..+|+|+||+||||||+.+.|+--|
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            44689999999999999999998765

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.81  E-value=0.00022  Score=62.67  Aligned_cols=22  Identities=36%  Similarity=0.439  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      .|+|+|++|+|||||++.|.|.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHhcCC
Confidence            5999999999999999999985

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.80  E-value=0.0031  Score=56.26  Aligned_cols=31  Identities=19%  Similarity=0.395  Sum_probs=22.6

Q ss_pred             eeeecCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          283 SLSIPSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       283 s~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      ++.=++..++++|||+|+||||.+--|+..+
T Consensus         5 ~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2           5 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             CCCSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3333455588999999999998766666554

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.77  E-value=0.00043  Score=62.98  Aligned_cols=43  Identities=19%  Similarity=0.378  Sum_probs=32.5

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchh
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLST  460 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~  460 (478)
                      +.+++++||+-. |.......+.+.+.....+..+|++|++.+-
T Consensus       131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~  173 (252)
T d1sxje2         131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSP  173 (252)
T ss_dssp             CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred             CceEEEeccccc-cccccchhhhcccccccccccceeeeccccc
Confidence            566999999965 7888887888877665555567889998753

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.0003  Score=62.74  Aligned_cols=44  Identities=20%  Similarity=0.330  Sum_probs=30.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCC
Q 048556          291 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVL  348 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l  348 (478)
                      +|||.|++||||||+.+.|...+....-              ......+.++++|.+.
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l~~~~~--------------~~~~~~~~vi~~D~yy   47 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLLGQNEV--------------DYRQKQVVILSQDSFY   47 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTGGGS--------------CGGGCSEEEEEGGGGB
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhchhcc--------------ccCCCceEEEeccccc
Confidence            6899999999999999988765432110              0113456788887763

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.63  E-value=0.00029  Score=61.92  Aligned_cols=28  Identities=32%  Similarity=0.423  Sum_probs=25.4

Q ss_pred             ecCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          286 IPSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       286 i~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      ++++.++.|+||+||||||+.+.|+.-|
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            5678899999999999999999998865

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.00044  Score=60.26  Aligned_cols=23  Identities=22%  Similarity=0.365  Sum_probs=20.5

Q ss_pred             CEEEEEcCCCCChHHHHHHHhcc
Q 048556          290 TTAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      ..+.|+||||+|||||++.|...
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHh
Confidence            57899999999999999988754

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.63  E-value=0.0046  Score=56.43  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      -+.+.||+|||||+|++.++...
T Consensus        44 giLl~GppGtGKT~la~aia~~~   66 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGEA   66 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEecCCCCChhHHHHHHHHHc
Confidence            47899999999999999999764

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.62  E-value=0.00033  Score=61.52  Aligned_cols=26  Identities=23%  Similarity=0.356  Sum_probs=23.1

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +-.+++|+||+||||||+.+.|+.-|
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            34469999999999999999999877

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.58  E-value=0.0092  Score=52.87  Aligned_cols=26  Identities=35%  Similarity=0.510  Sum_probs=21.5

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhccCC
Q 048556          289 GTTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       289 G~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      ..++.++||+|+||||.+--|+..+.
T Consensus        10 ~~vi~lvGp~GvGKTTTiaKLA~~~~   35 (207)
T d1ls1a2          10 RNLWFLVGLQGSGKTTTAAKLALYYK   35 (207)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45789999999999988877776654

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.58  E-value=0.00044  Score=60.51  Aligned_cols=43  Identities=33%  Similarity=0.546  Sum_probs=30.1

Q ss_pred             EEEEcCCCCChHHHHHHHhccC-------------CCCccEEEECCeecCCCCHHHhh
Q 048556          292 AALVGQSGSGKSTVISLIERFY-------------DPQAGEVLIDGVNLKEFQLKWIR  336 (478)
Q Consensus       292 ~~ivG~sGsGKSTL~~ll~g~~-------------~~~~G~i~~~g~~~~~~~~~~~r  336 (478)
                      +.|+|||||||+||++.|+.-.             +|..|++  +|++..-.+.+++.
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~--~g~dy~fvs~~~f~   59 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFK   59 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCC--BTTTEEECCHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCc--CCccceeccHHHHH
Confidence            7899999999999999886543             2334543  56665555555553

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=0.00058  Score=64.74  Aligned_cols=46  Identities=15%  Similarity=0.350  Sum_probs=34.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccH
Q 048556          291 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSI  353 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti  353 (478)
                      +|||.|+|||||||+.+.|..+..-..+                 ...+..+++|.+..+...
T Consensus        82 iIGIaG~sgSGKSTla~~L~~lL~~~~~-----------------~~~v~~Is~D~F~~~~~~  127 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQALLSRWPE-----------------HRRVELITTDGFLHPNQV  127 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHTTSTT-----------------CCCEEEEEGGGGBCCHHH
T ss_pred             EEEEeCCCCCCCcHHHHHHHHHHhhhcC-----------------CCceEEEeeeeeECCchH
Confidence            6899999999999999999887642111                 134778888888776543

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.55  E-value=0.00047  Score=59.21  Aligned_cols=24  Identities=29%  Similarity=0.367  Sum_probs=20.7

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccC
Q 048556          290 TTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +.+.++|++||||||+.+.|+.-+
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHh
Confidence            457799999999999999998654

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.55  E-value=0.00048  Score=58.09  Aligned_cols=24  Identities=21%  Similarity=0.495  Sum_probs=21.6

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhcc
Q 048556          289 GTTAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       289 G~~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      |=+++++|++|+|||||++.|.|.
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            447999999999999999999875

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.52  E-value=0.00041  Score=60.17  Aligned_cols=22  Identities=36%  Similarity=0.542  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      -|||+|++++|||||++.|.|-
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEE
T ss_pred             eEEEECCCCCCHHHHHHHHhCC
Confidence            3899999999999999999774

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.52  E-value=0.00053  Score=59.15  Aligned_cols=22  Identities=36%  Similarity=0.415  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      .|+|+|++|+|||||++.|.|-
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999884

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.50  E-value=0.0006  Score=58.33  Aligned_cols=23  Identities=30%  Similarity=0.433  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +|+++|++|+|||||++.|+|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999853

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.47  E-value=0.00057  Score=58.24  Aligned_cols=22  Identities=32%  Similarity=0.469  Sum_probs=20.3

Q ss_pred             EEEEcCCCCChHHHHHHHhccC
Q 048556          292 AALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       292 ~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +.|+|++||||||+.+.|+..+
T Consensus         3 I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7889999999999999998776

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.45  E-value=0.00064  Score=58.53  Aligned_cols=23  Identities=35%  Similarity=0.488  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .+.|+||+||||||+.+.|+--|
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999997766

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.45  E-value=0.00059  Score=59.92  Aligned_cols=21  Identities=38%  Similarity=0.526  Sum_probs=18.8

Q ss_pred             EEEEcCCCCChHHHHHHHhcc
Q 048556          292 AALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       292 ~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +.|+||||||||||++.|+..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            679999999999999998654

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.43  E-value=0.00055  Score=59.70  Aligned_cols=23  Identities=35%  Similarity=0.502  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      ++.|.||+||||||+.+.|+--|
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999998776

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.00069  Score=59.15  Aligned_cols=23  Identities=30%  Similarity=0.452  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +++|+||+||||||..+.|+--|
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998765

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.40  E-value=0.0007  Score=56.53  Aligned_cols=22  Identities=23%  Similarity=0.356  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +|.|+|++|+|||||++-+.+-
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999988754

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.38  E-value=0.00077  Score=58.09  Aligned_cols=22  Identities=32%  Similarity=0.463  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +|+|+|++|+|||||++.|+|-
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7999999999999999999985

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.37  E-value=0.00077  Score=58.36  Aligned_cols=23  Identities=35%  Similarity=0.497  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      ++.|+||+||||||+.+.|+--|
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999876

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.34  E-value=0.00079  Score=56.11  Aligned_cols=22  Identities=18%  Similarity=0.445  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.+-
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6889999999999999999985

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.33  E-value=0.00081  Score=56.50  Aligned_cols=40  Identities=20%  Similarity=0.138  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 048556          404 QKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKI  445 (478)
Q Consensus       404 q~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~  445 (478)
                      +.-.-.+++..+.+.+.-++  |+||.+-..-.++++.|.+.
T Consensus       125 ~~i~~~~~~~~~~~~~~~~~--~~SA~~g~gv~e~~~~l~~~  164 (169)
T d1upta_         125 SEMANSLGLPALKDRKWQIF--KTSATKGTGLDEAMEWLVET  164 (169)
T ss_dssp             HHHHHHHTGGGCTTSCEEEE--ECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCEEE--EEeCCCCCCHHHHHHHHHHH
Confidence            34444556666666556555  89999999888888777543

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.00097  Score=58.15  Aligned_cols=28  Identities=18%  Similarity=0.381  Sum_probs=24.9

Q ss_pred             ecCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          286 IPSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       286 i~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +++|+.+.|.||+|||||||+.-++.-.
T Consensus        20 i~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          20 IETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            8999999999999999999988776543

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.32  E-value=0.0009  Score=60.20  Aligned_cols=23  Identities=35%  Similarity=0.640  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +++|+||.|||||||++.|....
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Confidence            58999999999999999998654

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.32  E-value=0.0008  Score=57.35  Aligned_cols=23  Identities=43%  Similarity=0.553  Sum_probs=20.1

Q ss_pred             EEEEcCCCCChHHHHHHHhccCC
Q 048556          292 AALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       292 ~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      +.++|++||||||+.++|+..+.
T Consensus         4 IvliG~~G~GKSTig~~La~~l~   26 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALG   26 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            66789999999999999987663

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.30  E-value=0.00075  Score=57.70  Aligned_cols=27  Identities=15%  Similarity=0.316  Sum_probs=22.4

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      ++.-+++|+|++|+|||||++.+.+-.
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            334479999999999999999998864

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.29  E-value=0.00092  Score=57.24  Aligned_cols=22  Identities=32%  Similarity=0.422  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +|+|+|.+|+|||||++.|.|-
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4889999999999999999874

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.28  E-value=0.00086  Score=58.93  Aligned_cols=22  Identities=23%  Similarity=0.499  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      .|+|+|++|||||||++.|.+-
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7899999999999999999875

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.28  E-value=0.00085  Score=58.48  Aligned_cols=22  Identities=41%  Similarity=0.682  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      ++||+|++||||||+++.|.-+
T Consensus         5 IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
Confidence            7899999999999999998643

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.26  E-value=0.00094  Score=59.45  Aligned_cols=24  Identities=38%  Similarity=0.542  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCC
Q 048556          291 TAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      +++|-||+||||||+.++|+--|.
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            578899999999999999997664

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.25  E-value=0.0007  Score=58.09  Aligned_cols=24  Identities=25%  Similarity=0.418  Sum_probs=21.1

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccC
Q 048556          290 TTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      =.|+|+|++++|||||++.|.+..
T Consensus        17 ~~I~lvG~~NvGKSSL~n~L~~~~   40 (188)
T d1puia_          17 IEVAFAGRSNAGKSSALNTLTNQK   40 (188)
T ss_dssp             EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            359999999999999999998864

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.00082  Score=60.51  Aligned_cols=27  Identities=19%  Similarity=0.432  Sum_probs=24.4

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      ++..++|-|+.||||||++++|...++
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            467899999999999999999998774

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.24  E-value=0.00065  Score=58.62  Aligned_cols=21  Identities=33%  Similarity=0.597  Sum_probs=19.8

Q ss_pred             EEEEcCCCCChHHHHHHHhcc
Q 048556          292 AALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       292 ~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      |||+|++|+|||||++.|.|.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999999875

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.24  E-value=0.00097  Score=59.50  Aligned_cols=43  Identities=33%  Similarity=0.331  Sum_probs=32.2

Q ss_pred             ecCCCEEEEEcCCCCChHHHHHHHhccCCCCc--cEEEECCeecC
Q 048556          286 IPSGTTAALVGQSGSGKSTVISLIERFYDPQA--GEVLIDGVNLK  328 (478)
Q Consensus       286 i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~--G~i~~~g~~~~  328 (478)
                      =++|.++.+.|.|||||||+.+.|...+....  -.+.+||..+.
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR   65 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR   65 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHH
Confidence            36889999999999999999999975442211  34677776653

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.24  E-value=0.00098  Score=58.21  Aligned_cols=25  Identities=32%  Similarity=0.502  Sum_probs=22.5

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhccC
Q 048556          289 GTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       289 G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .-+|+|-|+.||||||+++.|...+
T Consensus         9 p~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           9 PFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            3489999999999999999999866

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.23  E-value=0.00094  Score=58.65  Aligned_cols=24  Identities=21%  Similarity=0.464  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCC
Q 048556          291 TAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      .++++|.+||||||+++.|+..+.
T Consensus         4 li~l~GlpgsGKSTla~~L~~~l~   27 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTRYLN   27 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            589999999999999999997664

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.20  E-value=0.00068  Score=58.31  Aligned_cols=25  Identities=32%  Similarity=0.558  Sum_probs=22.0

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccCC
Q 048556          290 TTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      +++.|.|++||||||+++.|+..+.
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3577899999999999999998775

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.18  E-value=0.0011  Score=57.17  Aligned_cols=23  Identities=30%  Similarity=0.408  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      ++.|+||+||||||..+.|+--+
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999998765

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.11  E-value=0.0012  Score=58.36  Aligned_cols=24  Identities=25%  Similarity=0.415  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCC
Q 048556          291 TAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      +|+|-||+||||||+.+.|+.-|.
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            899999999999999999987664

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.07  E-value=0.0012  Score=60.44  Aligned_cols=33  Identities=36%  Similarity=0.390  Sum_probs=26.4

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccCCCCccEEEECC
Q 048556          290 TTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG  324 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g  324 (478)
                      ..+.++||+|||||||++.|++.+..  +-+.+|+
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~   65 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN   65 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhhc--ceEEEec
Confidence            45889999999999999999998753  3455655

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.06  E-value=0.0014  Score=56.57  Aligned_cols=23  Identities=26%  Similarity=0.381  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .+.|.||+||||||+.+.|+--|
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998776

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.06  E-value=0.0018  Score=54.68  Aligned_cols=23  Identities=17%  Similarity=0.304  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +++++|++|||||||++.+.+-.
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            58999999999999999998864

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.0017  Score=57.74  Aligned_cols=29  Identities=24%  Similarity=0.196  Sum_probs=25.6

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccCCC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFYDP  315 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~  315 (478)
                      ++|.+++|-|+.||||||+.++|...+..
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~   29 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALCA   29 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            57999999999999999999999876643

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.0036  Score=53.13  Aligned_cols=28  Identities=29%  Similarity=0.484  Sum_probs=22.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhc-----cCCCCcc
Q 048556          291 TAALVGQSGSGKSTVISLIER-----FYDPQAG  318 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g-----~~~~~~G  318 (478)
                      +++++|.+|+|||||++-+.+     -|.|+-|
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~   36 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE   36 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCccCccee
Confidence            689999999999999987664     3456655

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.97  E-value=0.0016  Score=57.72  Aligned_cols=20  Identities=40%  Similarity=0.642  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q 048556          291 TAALVGQSGSGKSTVISLIE  310 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~  310 (478)
                      ++||+|+.||||||+++.+.
T Consensus         4 iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999885

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.90  E-value=0.0017  Score=59.83  Aligned_cols=23  Identities=30%  Similarity=0.407  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .++|+|++|+|||||+|.|.|-.
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            48999999999999999999864

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.88  E-value=0.00057  Score=57.52  Aligned_cols=22  Identities=27%  Similarity=0.418  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.|.|-
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999875

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.87  E-value=0.002  Score=56.97  Aligned_cols=27  Identities=19%  Similarity=0.345  Sum_probs=24.5

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      +|..|+|-|+.||||||+++.|...+.
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~   27 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLE   27 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            589999999999999999999987654

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=95.83  E-value=0.002  Score=56.34  Aligned_cols=25  Identities=44%  Similarity=0.598  Sum_probs=22.0

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhccC
Q 048556          289 GTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       289 G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .=.++|+||+||||||+.+.|+--|
T Consensus         6 ~mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           6 LLRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             ceeEEEECCCCCCHHHHHHHHHHHH
Confidence            3468899999999999999999866

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=95.83  E-value=0.0018  Score=55.90  Aligned_cols=21  Identities=19%  Similarity=0.444  Sum_probs=19.8

Q ss_pred             EEEEcCCCCChHHHHHHHhcc
Q 048556          292 AALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       292 ~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      |||+|++++|||||++.|.+.
T Consensus         8 IaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEeCCCCcHHHHHHHHHHh
Confidence            899999999999999999874

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.80  E-value=0.0021  Score=55.45  Aligned_cols=23  Identities=26%  Similarity=0.514  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .+.|+||.||||||+.+.|+--|
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999998765

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0041  Score=52.57  Aligned_cols=36  Identities=25%  Similarity=0.472  Sum_probs=26.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhc-----cCCCCccE-----EEECCee
Q 048556          291 TAALVGQSGSGKSTVISLIER-----FYDPQAGE-----VLIDGVN  326 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g-----~~~~~~G~-----i~~~g~~  326 (478)
                      +|+++|++|+|||||++.+.+     .+.|+-|.     +.+||.+
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~   51 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQE   51 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEE
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEE
Confidence            799999999999999998764     23455443     4566654

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.71  E-value=0.0025  Score=54.28  Aligned_cols=21  Identities=24%  Similarity=0.504  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 048556          291 TAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      +++++|++|+|||||++.+.+
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            489999999999999998765

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=95.68  E-value=0.0026  Score=56.52  Aligned_cols=28  Identities=36%  Similarity=0.698  Sum_probs=23.3

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccCCC
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFYDP  315 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~  315 (478)
                      ++.+++++||+|+||||.+--|+..+.-
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~   32 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQN   32 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            5789999999999999987777776653

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=95.66  E-value=0.0015  Score=62.32  Aligned_cols=28  Identities=21%  Similarity=0.315  Sum_probs=24.0

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccCCC
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFYDP  315 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~  315 (478)
                      +.-.+||+||+|||||||++.|.+.+..
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~   80 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFGMLLIR   80 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CceEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence            4568999999999999999999876644

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.64  E-value=0.0026  Score=57.22  Aligned_cols=35  Identities=26%  Similarity=0.374  Sum_probs=27.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeec
Q 048556          291 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNL  327 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~  327 (478)
                      .+.+.||+|+||||++++++..+....+  .++|.+.
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~--~~~~~~~   71 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQTNIH--VTSGPVL   71 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHTCCEE--EEETTTC
T ss_pred             eEEEECCCCCcHHHHHHHHHhccCCCcc--cccCccc
Confidence            4789999999999999999998876543  3455443

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=95.63  E-value=0.0026  Score=54.03  Aligned_cols=26  Identities=19%  Similarity=0.299  Sum_probs=22.2

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhcc
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      ++.=+++++|.+|||||||++-+.+-
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcC
Confidence            34447999999999999999998874

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.58  E-value=0.0028  Score=55.71  Aligned_cols=23  Identities=22%  Similarity=0.238  Sum_probs=20.4

Q ss_pred             CEEEEEcCCCCChHHHHHHHhcc
Q 048556          290 TTAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      ..|+|+|++|+|||||++.+.+-
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            36899999999999999999864

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.58  E-value=0.0031  Score=56.20  Aligned_cols=28  Identities=21%  Similarity=0.394  Sum_probs=25.5

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccCCC
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFYDP  315 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~  315 (478)
                      +|..|+|-|+.||||||++++|.-.+..
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~   29 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQP   29 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            7999999999999999999999877654

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.53  E-value=0.0032  Score=56.11  Aligned_cols=25  Identities=24%  Similarity=0.485  Sum_probs=23.1

Q ss_pred             ecCCCEEEEEcCCCCChHHHHHHHh
Q 048556          286 IPSGTTAALVGQSGSGKSTVISLIE  310 (478)
Q Consensus       286 i~~G~~~~ivG~sGsGKSTL~~ll~  310 (478)
                      +++|+.+-|.||+|||||||..-++
T Consensus        31 i~~G~~~li~G~pGsGKT~l~lq~~   55 (251)
T d1szpa2          31 VETGSITELFGEFRTGKSQLCHTLA   55 (251)
T ss_dssp             EESSSEEEEEESTTSSHHHHHHHHT
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHHH
Confidence            8999999999999999999997664

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.0063  Score=51.54  Aligned_cols=28  Identities=32%  Similarity=0.542  Sum_probs=22.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhc-----cCCCCcc
Q 048556          291 TAALVGQSGSGKSTVISLIER-----FYDPQAG  318 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g-----~~~~~~G  318 (478)
                      +++++|++|+|||||++-+.+     -|.|+-|
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~   36 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE   36 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCccCCcee
Confidence            589999999999999998874     3456545

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.46  E-value=0.002  Score=60.16  Aligned_cols=24  Identities=29%  Similarity=0.562  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCC
Q 048556          291 TAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      ++||.|+|||||||+.+.|...+.
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~   29 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFR   29 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHh
Confidence            799999999999999999887654

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.44  E-value=0.0037  Score=61.31  Aligned_cols=24  Identities=33%  Similarity=0.584  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCC
Q 048556          291 TAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      .|||+|++|+|||||+|.|.|...
T Consensus        58 ~Iai~G~~n~GKSSLiNaL~G~~~   81 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFINTLRGIGN   81 (400)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            489999999999999999999654

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.43  E-value=0.0033  Score=55.68  Aligned_cols=22  Identities=45%  Similarity=0.576  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      ++||+|+.||||||+.+.+..+
T Consensus         5 iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHC
Confidence            7899999999999999998643

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.41  E-value=0.0034  Score=53.32  Aligned_cols=21  Identities=19%  Similarity=0.360  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 048556          291 TAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      +++++|++|+|||||++-+.+
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            489999999999999997754

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=95.41  E-value=0.0034  Score=53.45  Aligned_cols=22  Identities=23%  Similarity=0.398  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.+-
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999988663

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.40  E-value=0.0037  Score=56.48  Aligned_cols=25  Identities=32%  Similarity=0.458  Sum_probs=21.9

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccCC
Q 048556          290 TTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      ..+.+.||+|+||||++++++....
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHH
Confidence            3578999999999999999998764

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.35  E-value=0.0035  Score=59.23  Aligned_cols=38  Identities=11%  Similarity=0.364  Sum_probs=28.1

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeec
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNL  327 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~  327 (478)
                      |+.-+.++||+|||||.|+|.|+.....  --+.+++-++
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~--~~~~i~~s~~   85 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKF   85 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTC--CEEEEEGGGG
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhcccc--chhccccccc
Confidence            4456678999999999999999987642  2455655443

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=95.27  E-value=0.0041  Score=52.49  Aligned_cols=21  Identities=38%  Similarity=0.534  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 048556          291 TAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      +++++|++|+|||||++-+.+
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            578999999999999997754

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.0063  Score=51.60  Aligned_cols=30  Identities=30%  Similarity=0.461  Sum_probs=23.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhc-----cCCCCccEE
Q 048556          291 TAALVGQSGSGKSTVISLIER-----FYDPQAGEV  320 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g-----~~~~~~G~i  320 (478)
                      +++++|.+|+|||||++-+.+     -+.|+.|..
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~   41 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS   41 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCcccCcccccc
Confidence            699999999999999987654     335665543

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.23  E-value=0.034  Score=49.75  Aligned_cols=43  Identities=14%  Similarity=0.175  Sum_probs=32.5

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhh
Q 048556          418 PRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTV  461 (478)
Q Consensus       418 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~  461 (478)
                      .+++|+||+=. |+......+...+.+...+...|++|++.+-+
T Consensus       116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i  158 (239)
T d1njfa_         116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL  158 (239)
T ss_dssp             SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred             CEEEEEECccc-CCHHHHHHHHHHHhcCCCCeEEEEEcCCcccc
Confidence            46999999954 77777777777776644566788899987654

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.21  E-value=0.0093  Score=50.39  Aligned_cols=28  Identities=25%  Similarity=0.464  Sum_probs=22.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc-----CCCCcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF-----YDPQAG  318 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~-----~~~~~G  318 (478)
                      +++++|++|+|||||++-+.+-     +.|+.|
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~   37 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG   37 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCCcccccccc
Confidence            6899999999999999966543     355555

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.17  E-value=0.0058  Score=51.44  Aligned_cols=21  Identities=29%  Similarity=0.445  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 048556          291 TAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      +++++|++|+|||||++-+.+
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999986653

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.17  E-value=0.0045  Score=52.86  Aligned_cols=21  Identities=43%  Similarity=0.721  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 048556          291 TAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      +++++|++|+|||||++.+.+
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999997755

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.15  E-value=0.0057  Score=51.62  Aligned_cols=21  Identities=29%  Similarity=0.455  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 048556          291 TAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      +++++|++|+|||||++.+.+
T Consensus         5 Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999988764

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.13  E-value=0.0038  Score=56.13  Aligned_cols=25  Identities=24%  Similarity=0.460  Sum_probs=22.5

Q ss_pred             ecCCCEEEEEcCCCCChHHHHHHHh
Q 048556          286 IPSGTTAALVGQSGSGKSTVISLIE  310 (478)
Q Consensus       286 i~~G~~~~ivG~sGsGKSTL~~ll~  310 (478)
                      +++|+.+.|.||+|||||||.--++
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence            8999999999999999999987543

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.13  E-value=0.011  Score=50.05  Aligned_cols=29  Identities=28%  Similarity=0.485  Sum_probs=22.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhc-----cCCCCccE
Q 048556          291 TAALVGQSGSGKSTVISLIER-----FYDPQAGE  319 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g-----~~~~~~G~  319 (478)
                      ++.++|.+|+|||||++.+..     -|.|+.|.
T Consensus         6 KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~   39 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD   39 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCE
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCCcccCCcccc
Confidence            689999999999999998753     34566553

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.11  E-value=0.0061  Score=55.08  Aligned_cols=30  Identities=23%  Similarity=0.474  Sum_probs=25.3

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhccCCCCcc
Q 048556          289 GTTAALVGQSGSGKSTVISLIERFYDPQAG  318 (478)
Q Consensus       289 G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G  318 (478)
                      ...+.|.||+|+||||+++.++..+....+
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~   72 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWELYKDKTT   72 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHhcccC
Confidence            357899999999999999999988765433

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.09  E-value=0.0052  Score=55.58  Aligned_cols=27  Identities=19%  Similarity=0.230  Sum_probs=22.6

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      ..+..+.|+||+|+|||||++-++.-.
T Consensus        27 ~~~~~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          27 LRAPITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             TCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence            356789999999999999999876543

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.04  E-value=0.0048  Score=55.12  Aligned_cols=23  Identities=26%  Similarity=0.367  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .+.|.||+|+||||++++++..+
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHH
Confidence            47899999999999999999865

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=95.04  E-value=0.0046  Score=52.35  Aligned_cols=31  Identities=19%  Similarity=0.170  Sum_probs=27.6

Q ss_pred             eecCCCEEEEEcCCCCChHHHHHHHhccCCC
Q 048556          285 SIPSGTTAALVGQSGSGKSTVISLIERFYDP  315 (478)
Q Consensus       285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~  315 (478)
                      ..+||.++++.|+=||||||+.|-++.-+-.
T Consensus        29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             cCCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence            4579999999999999999999999887754

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.0055  Score=52.73  Aligned_cols=21  Identities=29%  Similarity=0.400  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 048556          291 TAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      +++++|++|+|||||++.+.+
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            489999999999999988875

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.04  E-value=0.0059  Score=53.96  Aligned_cols=24  Identities=29%  Similarity=0.549  Sum_probs=21.8

Q ss_pred             ecCCCEEEEEcCCCCChHHHHHHH
Q 048556          286 IPSGTTAALVGQSGSGKSTVISLI  309 (478)
Q Consensus       286 i~~G~~~~ivG~sGsGKSTL~~ll  309 (478)
                      +++|+.+.|.|++|+|||||+.-+
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~   46 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQF   46 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHH
Confidence            899999999999999999998543

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.0053  Score=55.06  Aligned_cols=27  Identities=19%  Similarity=0.196  Sum_probs=24.3

Q ss_pred             eecCCCEEEEEcCCCCChHHHHHHHhc
Q 048556          285 SIPSGTTAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      =|++|+.+.|.||+||||||+..-++.
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            389999999999999999999887763

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.99  E-value=0.0052  Score=51.81  Aligned_cols=22  Identities=32%  Similarity=0.431  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++.+.+-
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5889999999999999977653

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=94.99  E-value=0.0047  Score=55.46  Aligned_cols=24  Identities=29%  Similarity=0.416  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCC
Q 048556          291 TAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      .+.+.||+|+||||+++++++.+.
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            367999999999999999998764

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=94.97  E-value=0.0051  Score=56.79  Aligned_cols=51  Identities=25%  Similarity=0.361  Sum_probs=37.2

Q ss_pred             EEEEEcCCCCChHHHHHHHh---ccCCCCccEEEECCeecCCCCHHHhhcceEEEe
Q 048556          291 TAALVGQSGSGKSTVISLIE---RFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVS  343 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~---g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~  343 (478)
                      -+||+|+.|||||||+..|+   |.. ...|++. +|..+.++.+++..+.+++-+
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~-~~~g~v~-~g~~~~D~~~~E~~r~~ti~~   57 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAK-ERRGRVE-EGTTTTDYTPEAKLHRTTVRT   57 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCGG-GTCCSSCCSHHHHHTTSCCSC
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCc-hhhccch-hccccccchHHHHHhCCeEEe
Confidence            37999999999999999884   333 2346553 566778888888777765443

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.96  E-value=0.0055  Score=52.68  Aligned_cols=21  Identities=24%  Similarity=0.531  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 048556          291 TAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      +++++|.+|+|||||++-+.+
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999987764

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.94  E-value=0.0062  Score=51.60  Aligned_cols=23  Identities=26%  Similarity=0.436  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +++++|++|+|||||++.+.+..
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCcCHHHHHHHHhCCc
Confidence            58999999999999999998764

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.0058  Score=51.58  Aligned_cols=22  Identities=23%  Similarity=0.329  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++-+.+-
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            6899999999999999888653

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.91  E-value=0.0059  Score=51.98  Aligned_cols=22  Identities=23%  Similarity=0.415  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++-+.+-
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            5889999999999999987643

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.91  E-value=0.0057  Score=54.39  Aligned_cols=28  Identities=21%  Similarity=0.287  Sum_probs=24.8

Q ss_pred             ecCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          286 IPSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       286 i~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +++|+.+.|.|++|+||||++.-++--.
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            8999999999999999999988776433

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=94.87  E-value=0.0057  Score=59.93  Aligned_cols=33  Identities=21%  Similarity=0.205  Sum_probs=26.9

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccCCCCccE
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFYDPQAGE  319 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~  319 (478)
                      .++-.+.+.||+||||||.+..+....+....+
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~  188 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERN  188 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSC
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhcCCCce
Confidence            567789999999999999999999876543333

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.86  E-value=0.0061  Score=56.77  Aligned_cols=22  Identities=32%  Similarity=0.262  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      ++||-|++|||||||.+.|.-.
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~~   50 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYNH   50 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHH
Confidence            7899999999999999877544

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.84  E-value=0.0056  Score=54.61  Aligned_cols=22  Identities=23%  Similarity=0.439  Sum_probs=20.2

Q ss_pred             EEEEcCCCCChHHHHHHHhccC
Q 048556          292 AALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       292 ~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +.+.||+|+||||+++.++..+
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            7899999999999999999864

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.81  E-value=0.0088  Score=50.85  Aligned_cols=23  Identities=30%  Similarity=0.556  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      ++.++|.+|+|||||++.+.+..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCc
Confidence            58899999999999999987754

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=94.78  E-value=0.0053  Score=52.63  Aligned_cols=25  Identities=20%  Similarity=0.349  Sum_probs=20.9

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhcc
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +-=+++++|++|+|||||++-+.+-
T Consensus        16 k~~KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          16 KELRILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            3347899999999999999988654

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.75  E-value=0.013  Score=50.06  Aligned_cols=22  Identities=27%  Similarity=0.338  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +++++|++|+|||||++-+.+-
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999966653

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.75  E-value=0.0069  Score=54.29  Aligned_cols=22  Identities=23%  Similarity=0.433  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +|||+|+++||||||++.|.+.
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhh
Confidence            4999999999999999999875

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.74  E-value=0.0085  Score=50.75  Aligned_cols=21  Identities=24%  Similarity=0.575  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 048556          291 TAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      +++++|++|+|||||++-+.+
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998875

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.74  E-value=0.0072  Score=52.80  Aligned_cols=24  Identities=25%  Similarity=0.475  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCC
Q 048556          291 TAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      +|+|-|.-||||||+++.|...+.
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~   25 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999987654

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.70  E-value=0.0069  Score=50.84  Aligned_cols=21  Identities=19%  Similarity=0.411  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 048556          291 TAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      +++++|.+|+|||||++-+.+
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999998874

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.65  E-value=0.0075  Score=50.62  Aligned_cols=21  Identities=19%  Similarity=0.284  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 048556          291 TAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      +++++|++|+|||||++-+..
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999997764

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.58  E-value=0.0092  Score=50.67  Aligned_cols=21  Identities=29%  Similarity=0.515  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 048556          291 TAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      +++++|++|+|||||++.+.+
T Consensus         8 KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999976654

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.57  E-value=0.014  Score=49.30  Aligned_cols=29  Identities=31%  Similarity=0.500  Sum_probs=22.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhc-----cCCCCccE
Q 048556          291 TAALVGQSGSGKSTVISLIER-----FYDPQAGE  319 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g-----~~~~~~G~  319 (478)
                      ++.++|.+|+|||||++-+.+     .+.|+-|.
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~   39 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIED   39 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCE
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCCcccCcceee
Confidence            578999999999999997764     34555443

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=94.56  E-value=0.0083  Score=51.69  Aligned_cols=24  Identities=29%  Similarity=0.332  Sum_probs=20.5

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHh
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIE  310 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~  310 (478)
                      -.|.-+.|.|+||+||||++-.|.
T Consensus        12 ~~g~gvl~~G~sG~GKStlal~l~   35 (176)
T d1kkma_          12 IYGLGVLITGDSGVGKSETALELV   35 (176)
T ss_dssp             ETTEEEEEECCTTSCHHHHHHHHH
T ss_pred             ECCEEEEEEeCCCCCHHHHHHHHH
Confidence            357889999999999999987655

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.52  E-value=0.0085  Score=50.48  Aligned_cols=21  Identities=24%  Similarity=0.482  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 048556          291 TAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      +++++|++|+|||||++-+.+
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999987764

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=94.52  E-value=0.0081  Score=55.86  Aligned_cols=32  Identities=19%  Similarity=0.297  Sum_probs=28.5

Q ss_pred             eeeecCCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556          283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       283 s~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      =+.|-+|++.+|.|++|+|||||+..++.-..
T Consensus        37 l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~   68 (289)
T d1xpua3          37 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA   68 (289)
T ss_dssp             HSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             cccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence            36799999999999999999999999987553

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.51  E-value=0.0075  Score=54.90  Aligned_cols=24  Identities=25%  Similarity=0.288  Sum_probs=21.0

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccC
Q 048556          290 TTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      ..+.+.||+|||||++++.++...
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~~   64 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEES   64 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhhcc
Confidence            358899999999999999998753

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=94.46  E-value=0.0085  Score=51.64  Aligned_cols=32  Identities=31%  Similarity=0.397  Sum_probs=24.7

Q ss_pred             ccccceeeecCCCEEEEEcCCCCChHHHHHHHh
Q 048556          278 IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIE  310 (478)
Q Consensus       278 ~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~  310 (478)
                      .++.--+.+ .|.-+.|.||||+||||+.-.|.
T Consensus         5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~   36 (177)
T d1knxa2           5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI   36 (177)
T ss_dssp             EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred             eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence            344444455 68889999999999999997665

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.45  E-value=0.0074  Score=51.25  Aligned_cols=21  Identities=33%  Similarity=0.510  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 048556          291 TAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      +++++|++|+|||||++-+.+
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999997754

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.43  E-value=0.009  Score=50.36  Aligned_cols=21  Identities=29%  Similarity=0.543  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 048556          291 TAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      +++++|.+|+|||||++-+..
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998764

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.41  E-value=0.0088  Score=56.74  Aligned_cols=26  Identities=27%  Similarity=0.457  Sum_probs=22.4

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +.-.+||.||.|+|||||+.-|...+
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            34579999999999999999998754

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.41  E-value=0.0092  Score=51.19  Aligned_cols=21  Identities=19%  Similarity=0.379  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 048556          291 TAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      +++++|.+|+|||||++-+..
T Consensus         7 KivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            699999999999999987654

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.40  E-value=0.0089  Score=50.94  Aligned_cols=22  Identities=18%  Similarity=0.376  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      ++.++|++|+|||||++-+.+-
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            6899999999999999877653

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.37  E-value=0.0095  Score=50.23  Aligned_cols=21  Identities=19%  Similarity=0.349  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 048556          291 TAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      +++++|.+|+|||||++-+.+
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            578999999999999997754

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.36  E-value=0.0095  Score=55.15  Aligned_cols=49  Identities=20%  Similarity=0.230  Sum_probs=22.6

Q ss_pred             EEEEEcCCCCChHHHHHHHh---ccCCCCccEEEECCeecCCCCHHHhhcceEE
Q 048556          291 TAALVGQSGSGKSTVISLIE---RFYDPQAGEVLIDGVNLKEFQLKWIRGKIGL  341 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~---g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~  341 (478)
                      -+||+|+.|||||||+..|+   |..+. .|++. +|..+.++.+++..+.++.
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~-~g~v~-~~~~~~D~~~~E~~r~~si   59 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIHK-IGEVH-EGAATMDFMEQERERGITI   59 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSCC---------------------CCCCC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCcccc-cccee-cCceEEeccHHHHhcCCcc
Confidence            47999999999999999884   44433 46653 4555566666665555443

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.33  E-value=0.0094  Score=50.56  Aligned_cols=21  Identities=24%  Similarity=0.493  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 048556          291 TAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      +++++|.+|+|||||++-+.+
T Consensus         7 KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            389999999999999997764

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.31  E-value=0.0067  Score=51.58  Aligned_cols=21  Identities=33%  Similarity=0.536  Sum_probs=9.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 048556          291 TAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      +++++|.+|+|||||++.+++
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999986664

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.30  E-value=0.01  Score=50.64  Aligned_cols=21  Identities=29%  Similarity=0.548  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 048556          291 TAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      +++++|.+|+|||||++-+.+
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999998765

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.28  E-value=0.0097  Score=50.58  Aligned_cols=21  Identities=29%  Similarity=0.414  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 048556          291 TAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      +++++|.+|+|||||++-+.+
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999987664

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.20  E-value=0.013  Score=50.81  Aligned_cols=21  Identities=33%  Similarity=0.518  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 048556          291 TAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      +++|+|+.|+|||||++-+.+
T Consensus         8 KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhh
Confidence            389999999999999997764

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.18  E-value=0.011  Score=53.04  Aligned_cols=22  Identities=32%  Similarity=0.326  Sum_probs=19.9

Q ss_pred             CEEEEEcCCCCChHHHHHHHhc
Q 048556          290 TTAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      .++||.|+-||||||+.+.|..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999954

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.14  E-value=0.01  Score=52.69  Aligned_cols=43  Identities=16%  Similarity=0.318  Sum_probs=28.5

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchh
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLST  460 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~  460 (478)
                      +.+++++||.-. +.......+...+.........+++++..+-
T Consensus       101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~  143 (224)
T d1sxjb2         101 KHKIVILDEADS-MTAGAQQALRRTMELYSNSTRFAFACNQSNK  143 (224)
T ss_dssp             CCEEEEEESGGG-SCHHHHHTTHHHHHHTTTTEEEEEEESCGGG
T ss_pred             ceEEEEEecccc-cchhHHHHHhhhccccccceeeeeccCchhh
Confidence            357999999753 4445555666666665555667778877754

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.09  E-value=0.015  Score=49.04  Aligned_cols=21  Identities=29%  Similarity=0.488  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 048556          291 TAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      +++++|++|+|||||++-+..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            688999999999999998873

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.04  E-value=0.021  Score=48.79  Aligned_cols=29  Identities=28%  Similarity=0.496  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhc-----cCCCCccE
Q 048556          291 TAALVGQSGSGKSTVISLIER-----FYDPQAGE  319 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g-----~~~~~~G~  319 (478)
                      ++.++|.+|+|||||++-+..     -|.|+-|.
T Consensus         4 KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~   37 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE   37 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCCCccCCceee
Confidence            578999999999999975544     24555454

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=94.00  E-value=0.0096  Score=50.51  Aligned_cols=24  Identities=17%  Similarity=0.288  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCC
Q 048556          291 TAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      ++.++|++|+|||||++-+.+-..
T Consensus        14 kIvlvG~~~vGKTSli~rl~~~~~   37 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKLGQS   37 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTCCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            688999999999999999976543

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.99  E-value=0.012  Score=53.69  Aligned_cols=25  Identities=20%  Similarity=0.310  Sum_probs=21.7

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccCC
Q 048556          290 TTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      .-+.+.||+|||||++++.++....
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~~~   63 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANETG   63 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             ceeEEecCCCCCchHHHHHHHHHhC
Confidence            3488999999999999999998653

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=93.95  E-value=0.014  Score=50.65  Aligned_cols=22  Identities=23%  Similarity=0.492  Sum_probs=20.4

Q ss_pred             EEEEcCCCCChHHHHHHHhccC
Q 048556          292 AALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       292 ~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      +||+|...+|||||++.|.|..
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEeccCCcHHHHHHHHHhhh
Confidence            7999999999999999998854

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.91  E-value=0.013  Score=49.37  Aligned_cols=21  Identities=33%  Similarity=0.577  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 048556          291 TAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      +++++|++|+|||||++-+.+
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999996543

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.78  E-value=0.013  Score=51.95  Aligned_cols=42  Identities=17%  Similarity=0.361  Sum_probs=29.8

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchh
Q 048556          418 PRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLST  460 (478)
Q Consensus       418 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~  460 (478)
                      .+++++||.- .+.......+...|....+...+++++++...
T Consensus       100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~  141 (227)
T d1sxjc2         100 FKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHK  141 (227)
T ss_dssp             CEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred             eEEEEEeccc-cchhhHHHHHHHHhhhcccceeeccccCcHHH
Confidence            4699999974 57777777888888775555556667766553

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.68  E-value=0.016  Score=48.76  Aligned_cols=21  Identities=24%  Similarity=0.433  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 048556          291 TAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      +++++|.+|+|||||++-+..
T Consensus         5 KivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999998754

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=93.66  E-value=0.02  Score=48.89  Aligned_cols=25  Identities=28%  Similarity=0.275  Sum_probs=20.9

Q ss_pred             ecCCCEEEEEcCCCCChHHHHHHHh
Q 048556          286 IPSGTTAALVGQSGSGKSTVISLIE  310 (478)
Q Consensus       286 i~~G~~~~ivG~sGsGKSTL~~ll~  310 (478)
                      --.|.-+.|.|+||+||||+.-.+.
T Consensus        12 ~~~g~gvli~G~sg~GKS~la~~l~   36 (169)
T d1ko7a2          12 DVYGVGVLITGDSGIGKSETALELI   36 (169)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             EECCEEEEEEeCCCCCHHHHHHHHH
Confidence            4468899999999999999986554

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=93.62  E-value=0.014  Score=53.56  Aligned_cols=42  Identities=21%  Similarity=0.354  Sum_probs=32.7

Q ss_pred             eecCCCEEEEEcCCCCChHHHHHHHhccCCCCccE-EEECCee
Q 048556          285 SIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE-VLIDGVN  326 (478)
Q Consensus       285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~-i~~~g~~  326 (478)
                      =+++|.++-|.||+|||||||+-.++....-..|. +++|...
T Consensus        50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~   92 (263)
T d1u94a1          50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH   92 (263)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc
Confidence            57899999999999999999987777766544444 6666554

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.54  E-value=0.023  Score=48.43  Aligned_cols=30  Identities=30%  Similarity=0.455  Sum_probs=25.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCCCCccEE
Q 048556          291 TAALVGQSGSGKSTVISLIERFYDPQAGEV  320 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i  320 (478)
                      ++.++|..|+|||||++-+..-..|+.|-.
T Consensus         4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~   33 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV   33 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence            689999999999999998877777777743

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.52  E-value=0.017  Score=49.57  Aligned_cols=21  Identities=19%  Similarity=0.395  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 048556          291 TAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      +++|+|.+|+|||||++-+..
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            589999999999999987653

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.46  E-value=0.018  Score=49.50  Aligned_cols=28  Identities=36%  Similarity=0.478  Sum_probs=22.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhc--cCCCCcc
Q 048556          291 TAALVGQSGSGKSTVISLIER--FYDPQAG  318 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g--~~~~~~G  318 (478)
                      ++.++|.+|+|||||++-+.-  -+.|+-|
T Consensus         4 KivllG~~~vGKTsll~r~~f~~~~~pTiG   33 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG   33 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence            688999999999999998832  2457878

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.44  E-value=0.02  Score=50.85  Aligned_cols=29  Identities=28%  Similarity=0.337  Sum_probs=23.4

Q ss_pred             CEEEEEcCCCCChHHHHHHH-hccCCCCcc
Q 048556          290 TTAALVGQSGSGKSTVISLI-ERFYDPQAG  318 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll-~g~~~~~~G  318 (478)
                      -++.++|++|+|||||++-+ .+-..|+-|
T Consensus         7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG   36 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRILHVVLTSG   36 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence            37899999999999999876 445567766

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=93.36  E-value=0.018  Score=55.34  Aligned_cols=39  Identities=21%  Similarity=0.254  Sum_probs=31.4

Q ss_pred             eecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEE-EECCee
Q 048556          285 SIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV-LIDGVN  326 (478)
Q Consensus       285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i-~~~g~~  326 (478)
                      .++++..+.+.||+|+||||+.+.|+++..   |.+ .+|+-+
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~---~~~i~in~s~  189 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG---GKALNVNLPL  189 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHC---CEEECCSSCT
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHcC---CCEEEEECcc
Confidence            457888999999999999999999999875   443 355544

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.34  E-value=0.018  Score=54.06  Aligned_cols=22  Identities=32%  Similarity=0.400  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      .|||||.+.+|||||+++|.|.
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             cEeEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999999885

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=93.19  E-value=0.014  Score=52.83  Aligned_cols=23  Identities=22%  Similarity=0.341  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .+.++||+|+||||+++.++..+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            35667999999999999999775

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.19  E-value=0.02  Score=49.38  Aligned_cols=20  Identities=20%  Similarity=0.401  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q 048556          291 TAALVGQSGSGKSTVISLIE  310 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~  310 (478)
                      +++++|++|+|||||++-+.
T Consensus         5 KvvllG~~~vGKTSli~r~~   24 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYT   24 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            68999999999999987664

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.12  E-value=0.02  Score=52.89  Aligned_cols=24  Identities=25%  Similarity=0.306  Sum_probs=21.9

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccC
Q 048556          290 TTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      -+|+|+||.++|||||++.|.|..
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCC
Confidence            489999999999999999999865

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=93.11  E-value=0.018  Score=57.01  Aligned_cols=45  Identities=16%  Similarity=0.452  Sum_probs=30.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCC
Q 048556          291 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEP  346 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~  346 (478)
                      -+.++||||||||-|++.|+++....  -+..|+...+         ..|||..|.
T Consensus        51 NILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~fT---------eaGYvG~DV   95 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKFT---------EVGYVGKEV   95 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGGC-------------CCCCT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCC--EEEeecceee---------ecceeecch
Confidence            57799999999999999999988543  3444444332         256666655

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.09  E-value=0.025  Score=52.12  Aligned_cols=29  Identities=24%  Similarity=0.355  Sum_probs=25.9

Q ss_pred             eeecCCCEEEEEcCCCCChHHHHHHHhcc
Q 048556          284 LSIPSGTTAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       284 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      +.+-+||+++|.|++|+|||||+.-++.-
T Consensus        63 ~pigkGQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          63 APYAKGGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence            67899999999999999999997777654

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.05  E-value=0.019  Score=51.19  Aligned_cols=25  Identities=28%  Similarity=0.501  Sum_probs=22.3

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccCC
Q 048556          290 TTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      +.++|=|+-||||||++++|...+.
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHh
Confidence            4789999999999999999987664

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=93.03  E-value=0.012  Score=55.75  Aligned_cols=28  Identities=21%  Similarity=0.349  Sum_probs=24.8

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccCCC
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFYDP  315 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~  315 (478)
                      .|.-+.|+||.|+|||||++.+.++++|
T Consensus        27 ~~h~vLl~G~pG~GKT~lar~~~~iLp~   54 (333)
T d1g8pa_          27 GIGGVLVFGDRGTGKSTAVRALAALLPE   54 (333)
T ss_dssp             GGCCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             CCCeEEEECCCCccHHHHHHHHHHhCCC
Confidence            3456899999999999999999999876

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=92.90  E-value=0.024  Score=52.78  Aligned_cols=36  Identities=28%  Similarity=0.457  Sum_probs=28.0

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhccC------------CCCccEEEECC
Q 048556          289 GTTAALVGQSGSGKSTVISLIERFY------------DPQAGEVLIDG  324 (478)
Q Consensus       289 G~~~~ivG~sGsGKSTL~~ll~g~~------------~~~~G~i~~~g  324 (478)
                      +=++||||.+.+|||||++.|.+--            +|.-|.+.+.+
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d   57 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD   57 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccc
Confidence            3469999999999999999998752            44567776543

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.77  E-value=0.024  Score=49.85  Aligned_cols=21  Identities=19%  Similarity=0.404  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 048556          291 TAALVGQSGSGKSTVISLIER  311 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g  311 (478)
                      -+||+|+.++|||||+..|+.
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll~   25 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALTY   25 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            489999999999999999964

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.74  E-value=0.025  Score=52.35  Aligned_cols=55  Identities=16%  Similarity=0.148  Sum_probs=33.6

Q ss_pred             ChHHHHHHHHHHHHcCCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEec
Q 048556          401 SGGQKQRIAIARAILKDPR--ILLLDEATSALDAESERVVQEALDKIMINRTTVIVAH  456 (478)
Q Consensus       401 SgGq~Qrl~lARall~~~~--ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH  456 (478)
                      ...+.+-.++++..+.+++  +++.+.++..+.......+.+.+.. ...++++++|+
T Consensus       145 ~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~-~~~r~i~Vltk  201 (299)
T d2akab1         145 PDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP-QGQRTIGVITK  201 (299)
T ss_dssp             TTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT-TCSSEEEEEEC
T ss_pred             hhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHhCc-CCCceeeEEec
Confidence            3444555688899998887  3446666655555544444444432 23578888875

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.59  E-value=0.027  Score=51.71  Aligned_cols=42  Identities=26%  Similarity=0.380  Sum_probs=33.1

Q ss_pred             eecCCCEEEEEcCCCCChHHHHHHHhccCCCCccE-EEECCee
Q 048556          285 SIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE-VLIDGVN  326 (478)
Q Consensus       285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~-i~~~g~~  326 (478)
                      =++.|.++-|.||+|||||||+-.++....-..|. |+||...
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~   98 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH   98 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc
Confidence            58999999999999999999987776666555565 5666654

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=92.59  E-value=0.045  Score=50.25  Aligned_cols=34  Identities=26%  Similarity=0.444  Sum_probs=27.3

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccC-----------CCCccEEEEC
Q 048556          290 TTAALVGQSGSGKSTVISLIERFY-----------DPQAGEVLID  323 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~-----------~~~~G~i~~~  323 (478)
                      =++||||-+.+|||||++.|.+--           +|.-|.+.+.
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~   47 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMP   47 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECC
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecc
Confidence            479999999999999999999542           5556877654

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=92.55  E-value=0.028  Score=52.30  Aligned_cols=52  Identities=17%  Similarity=0.219  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHcCCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEec
Q 048556          404 QKQRIAIARAILKDPR--ILLLDEATSALDAESERVVQEALDKIMINRTTVIVAH  456 (478)
Q Consensus       404 q~Qrl~lARall~~~~--ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH  456 (478)
                      +.+...+++..+.+|+  +++....+..........+.+.+.. ...+|++++|+
T Consensus       154 ~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~-~~~r~i~Vitk  207 (306)
T d1jwyb_         154 EQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP-EGKRTIGVITK  207 (306)
T ss_dssp             HHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS-SCSSEEEEEEC
T ss_pred             HHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhCc-CCCeEEEEEec
Confidence            4456678888888886  5556666666665555555554432 23478888876

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=92.17  E-value=0.029  Score=51.52  Aligned_cols=41  Identities=27%  Similarity=0.424  Sum_probs=32.3

Q ss_pred             eecCCCEEEEEcCCCCChHHHHHHHhccCCCCccE-EEECCe
Q 048556          285 SIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE-VLIDGV  325 (478)
Q Consensus       285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~-i~~~g~  325 (478)
                      =++.|.++-|.||+|||||||.-.++....-..|. +++|..
T Consensus        53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE   94 (268)
T d1xp8a1          53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE   94 (268)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECC
Confidence            47899999999999999999998888776544443 555544

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.07  E-value=0.035  Score=52.19  Aligned_cols=34  Identities=18%  Similarity=0.218  Sum_probs=26.1

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCe
Q 048556          290 TTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGV  325 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~  325 (478)
                      ..+.++||+|+|||.|++.|+..+..  --|.+|-.
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~~l~~--~~i~~d~s   86 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSKALGI--ELLRFDMS   86 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHTC--EEEEEEGG
T ss_pred             eEEEEECCCcchhHHHHHHHHhhccC--CeeEeccc
Confidence            35789999999999999999998642  24555443

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=91.68  E-value=0.049  Score=47.52  Aligned_cols=28  Identities=21%  Similarity=0.444  Sum_probs=23.0

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      +|.=-+||+|...+|||||++.|.|...
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~   33 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIWT   33 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhhc
Confidence            3444589999999999999999998553

>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Multidrug resistance ABC transporter MsbA, N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.36  E-value=4.3  Score=35.54  Aligned_cols=82  Identities=5%  Similarity=-0.113  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           95 VLTAGVMSTVITKLASRGQTAYSIAAAVAEQTI-GSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTF  173 (478)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l-~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (478)
                      ..+.........+...+..+...+..+...+.+ +.+.-++.......+ +.+.+..++..+...+..............
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (319)
T d3b60a2         166 APIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQ-EVETKRFDKVSNKMRLQGMKMVSASSISDP  244 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHhhcCCceeeehhcc-chhhhhhhhhhhhhhHHHHHHHHHHHhccc
Confidence            333344445555555554444444444443333 344444444333332 334444444444444444444444444444


Q ss_pred             HHHH
Q 048556          174 VAFS  177 (478)
Q Consensus       174 ~~~~  177 (478)
                      +..+
T Consensus       245 ~~~~  248 (319)
T d3b60a2         245 IIQL  248 (319)
T ss_dssp             HHHH
T ss_pred             chhh
Confidence            4433

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.28  E-value=0.048  Score=48.12  Aligned_cols=44  Identities=14%  Similarity=0.287  Sum_probs=30.2

Q ss_pred             cCCCCEEEEeCCCCCC-CHHHHHHHHHHHHHhc-CCCeEEEEecCc
Q 048556          415 LKDPRILLLDEATSAL-DAESERVVQEALDKIM-INRTTVIVAHRL  458 (478)
Q Consensus       415 l~~~~ililDEpts~L-D~~~~~~i~~~l~~~~-~~~t~i~itH~~  458 (478)
                      +++.+++++|+--.=. +...+..++..+.... .++.+|+++...
T Consensus        95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~  140 (213)
T d1l8qa2          95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH  140 (213)
T ss_dssp             HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCc
Confidence            5588899999874433 4667778888887665 456666666553

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=91.24  E-value=0.086  Score=48.16  Aligned_cols=59  Identities=20%  Similarity=0.191  Sum_probs=42.1

Q ss_pred             eecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCC
Q 048556          285 SIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPV  347 (478)
Q Consensus       285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~  347 (478)
                      ..++-..+.+.||.++||||++++|..++ +..|.+  ++. -+..+.+.+...-..+-+|+.
T Consensus       100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~l-g~~~~~--~~~-~~~f~l~~l~~k~~~~~~e~~  158 (267)
T d1u0ja_         100 KFGKRNTIWLFGPATTGKTNIAEAIAHTV-PFYGCV--NWT-NENFPFNDCVDKMVIWWEEGK  158 (267)
T ss_dssp             CSTTCCEEEEECSTTSSHHHHHHHHHHHS-SCEEEC--CTT-CSSCTTGGGSSCSEEEECSCC
T ss_pred             CCCccEEEEEEcCCCCCHHHHHHHHHHHh-cchhhc--ccc-CCCccccccCCCEEEEEeCCC
Confidence            45677789999999999999999999998 555543  332 245566666655555556664

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=91.10  E-value=0.081  Score=49.97  Aligned_cols=30  Identities=23%  Similarity=0.162  Sum_probs=24.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCCCCccEE
Q 048556          291 TAALVGQSGSGKSTVISLIERFYDPQAGEV  320 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i  320 (478)
                      .|.|=|+-||||||+++.|...+....+.+
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~   37 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAASGGSPTL   37 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGGCSSCEE
T ss_pred             EEEEECCccCCHHHHHHHHHHHhccCCCeE
Confidence            578889999999999999999887654333

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=91.07  E-value=0.034  Score=52.40  Aligned_cols=30  Identities=20%  Similarity=0.368  Sum_probs=23.1

Q ss_pred             eeecCCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556          284 LSIPSGTTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       284 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      ...++| .+.++||+|+|||.|++.|++...
T Consensus       119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~~  148 (321)
T d1w44a_         119 HRYASG-MVIVTGKGNSGKTPLVHALGEALG  148 (321)
T ss_dssp             EEEESE-EEEEECSSSSCHHHHHHHHHHHHH
T ss_pred             cccCCc-eEEEECCCCccHHHHHHHHHHHhc
Confidence            344444 455689999999999999998753

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=91.02  E-value=0.042  Score=53.39  Aligned_cols=34  Identities=24%  Similarity=0.286  Sum_probs=23.3

Q ss_pred             CEEEEEcCCCCChHHHHH-HHhccCCCCccEEEEC
Q 048556          290 TTAALVGQSGSGKSTVIS-LIERFYDPQAGEVLID  323 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~-ll~g~~~~~~G~i~~~  323 (478)
                      ..+.|+|+||||||++++ ++...+....+-|.+|
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD   85 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVD   85 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence            358999999999999986 4444444433444444

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.71  E-value=0.057  Score=45.97  Aligned_cols=28  Identities=36%  Similarity=0.479  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC---CCCcc
Q 048556          291 TAALVGQSGSGKSTVISLIERFY---DPQAG  318 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~---~~~~G  318 (478)
                      ++.++|.+|+|||||++-+..-.   .|+-|
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG   34 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRIIHGSGVPTTG   34 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence            68899999999999999885443   45545

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=90.61  E-value=0.036  Score=44.19  Aligned_cols=21  Identities=29%  Similarity=0.426  Sum_probs=18.3

Q ss_pred             ecCCCEEEEEcCCCCChHHHH
Q 048556          286 IPSGTTAALVGQSGSGKSTVI  306 (478)
Q Consensus       286 i~~G~~~~ivG~sGsGKSTL~  306 (478)
                      +++|+.+.|.+|+|||||+.+
T Consensus         4 l~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTH
T ss_pred             HHcCCcEEEEcCCCCChhHHH
Confidence            478999999999999999554

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.50  E-value=0.062  Score=49.28  Aligned_cols=24  Identities=33%  Similarity=0.283  Sum_probs=21.0

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhcc
Q 048556          289 GTTAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       289 G~~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      ..+++|+|..|.|||||++.+..-
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            458999999999999999988653

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=90.43  E-value=0.069  Score=49.05  Aligned_cols=36  Identities=17%  Similarity=0.195  Sum_probs=28.6

Q ss_pred             eeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccE
Q 048556          284 LSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE  319 (478)
Q Consensus       284 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~  319 (478)
                      +.+-+|++++|.|++|+|||+|+..+..-...+...
T Consensus        62 ~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v   97 (276)
T d1fx0a3          62 IPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVI   97 (276)
T ss_dssp             SCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCE
T ss_pred             ccccCCceEeeccCCCCChHHHHHHHHhhhcccCce
Confidence            689999999999999999999998655444444433

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=89.74  E-value=0.087  Score=46.01  Aligned_cols=24  Identities=17%  Similarity=0.331  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCC
Q 048556          291 TAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      .+.+.||+|+||||+++.++..+-
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHHHhcc
Confidence            588999999999999999988664

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=89.33  E-value=0.076  Score=46.15  Aligned_cols=22  Identities=23%  Similarity=0.487  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcc
Q 048556          291 TAALVGQSGSGKSTVISLIERF  312 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~  312 (478)
                      -+||+|..++|||||++.|.+.
T Consensus         5 ni~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           5 NVGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHH
Confidence            4899999999999999999864

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=89.29  E-value=0.099  Score=49.30  Aligned_cols=32  Identities=22%  Similarity=0.310  Sum_probs=25.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556          291 TAALVGQSGSGKSTVISLIERFYDPQAGEVLI  322 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~  322 (478)
                      .|.|=|+-||||||+++.|...+......+.+
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~   38 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILL   38 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTTTSGGGEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhhcCCceEE
Confidence            58899999999999999999888764334444

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.22  E-value=0.073  Score=49.13  Aligned_cols=28  Identities=18%  Similarity=0.325  Sum_probs=24.6

Q ss_pred             eeeecCCCEEEEEcCCCCChHHHHHHHh
Q 048556          283 SLSIPSGTTAALVGQSGSGKSTVISLIE  310 (478)
Q Consensus       283 s~~i~~G~~~~ivG~sGsGKSTL~~ll~  310 (478)
                      =+.+-+|++++|.|++|+|||||+.-+.
T Consensus        62 l~pig~GQr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          62 LVPIGRGQRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             HSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred             ccCccCCCEEEeecCCCCChHHHHHHHH
Confidence            3789999999999999999999976554

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=89.21  E-value=0.094  Score=49.08  Aligned_cols=38  Identities=18%  Similarity=0.325  Sum_probs=28.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhccC-CCCccEEEECCeecC
Q 048556          291 TAALVGQSGSGKSTVISLIERFY-DPQAGEVLIDGVNLK  328 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~-~~~~G~i~~~g~~~~  328 (478)
                      .+.++||+|+|||.+++.|+..+ .....-+.+|.....
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~~   93 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM   93 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC
T ss_pred             EEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccccc
Confidence            57799999999999999999875 333455667665443

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=89.07  E-value=0.08  Score=50.66  Aligned_cols=31  Identities=26%  Similarity=0.442  Sum_probs=23.6

Q ss_pred             EEEEcCCCCChHHHHHHHhccCCCCccEEEECC
Q 048556          292 AALVGQSGSGKSTVISLIERFYDPQAGEVLIDG  324 (478)
Q Consensus       292 ~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g  324 (478)
                      +.++||||+|||-|.|.|+.+.+.  .-+.+|-
T Consensus        71 iLfiGPTGvGKTElAk~LA~~~~~--~~ir~D~  101 (364)
T d1um8a_          71 ILLIGPTGSGKTLMAQTLAKHLDI--PIAISDA  101 (364)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTC--CEEEEEG
T ss_pred             eeeeCCCCccHHHHHHHHHhhccc--ceeehhh
Confidence            557899999999999999988632  3455543

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.98  E-value=0.081  Score=46.84  Aligned_cols=42  Identities=26%  Similarity=0.327  Sum_probs=28.0

Q ss_pred             HHHHHHcCCCCEEEE---eCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEec
Q 048556          409 AIARAILKDPRILLL---DEATSALDAESERVVQEALDKIMINRTTVIVAH  456 (478)
Q Consensus       409 ~lARall~~~~ilil---DEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH  456 (478)
                      .+.+.-+..++++++   |...   |   .+++.+.++++.++..++-++|
T Consensus       142 ~~~~~Qi~~AD~ivlNK~Dl~~---~---~~~~~~~l~~lNP~a~Ii~~~~  186 (222)
T d1nija1         142 TIAQSQVGYADRILLTKTDVAG---E---AEKLHERLARINARAPVYTVTH  186 (222)
T ss_dssp             HHHHHHHHTCSEEEEECTTTCS---C---THHHHHHHHHHCSSSCEEECCS
T ss_pred             HHHHHHHHhCCccccccccccc---H---HHHHHHHHHHHhCCCeEEEeeC
Confidence            455555677999997   5432   1   2367788888877766776665

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.77  E-value=0.11  Score=41.44  Aligned_cols=40  Identities=15%  Similarity=0.137  Sum_probs=29.0

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHH-hccCCCCcc-EEEE-CCee
Q 048556          287 PSGTTAALVGQSGSGKSTVISLI-ERFYDPQAG-EVLI-DGVN  326 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll-~g~~~~~~G-~i~~-~g~~  326 (478)
                      +.|=.+.+.|-||||||||.+.| ..+.+-..| .|++ ||.+
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~n   46 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN   46 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCCC
Confidence            56778999999999999999988 455554444 3553 4443

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=87.91  E-value=0.11  Score=41.71  Aligned_cols=32  Identities=25%  Similarity=0.194  Sum_probs=23.2

Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 048556          413 AILKDPRILLLDEATSALDAESERVVQEALDKI  445 (478)
Q Consensus       413 all~~~~ililDEpts~LD~~~~~~i~~~l~~~  445 (478)
                      -.+++-+++|+||.= .+|..+...+...++..
T Consensus        90 ~~~~~~~~vIiDE~H-~~~~~~~~~~~~~l~~~  121 (136)
T d1a1va1          90 CSGGAYDIIICDECH-STDATSILGIGTVLDQA  121 (136)
T ss_dssp             GGGCCCSEEEEETTT-CCSHHHHHHHHHHHHHT
T ss_pred             hhhhcCCEEEEeccc-ccCHHHHHHHHHHHHHH
Confidence            445678999999995 46888776666666544

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=87.83  E-value=0.12  Score=45.67  Aligned_cols=20  Identities=25%  Similarity=0.463  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q 048556          291 TAALVGQSGSGKSTVISLIE  310 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~  310 (478)
                      -++++|..++|||||+..|+
T Consensus         5 Ni~viGHVd~GKTTL~~~Ll   24 (224)
T d1jnya3           5 NLIVIGHVDHGKSTLVGRLL   24 (224)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEecCCCCHHHHHHHHH
Confidence            47999999999999998884

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=87.82  E-value=0.11  Score=48.78  Aligned_cols=24  Identities=25%  Similarity=0.351  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhccCC
Q 048556          291 TAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      .|+|=|+-||||||+++.|...+.
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC---
T ss_pred             EEEEECCcCCCHHHHHHHHHHHhC
Confidence            488999999999999999987654

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=87.70  E-value=0.15  Score=46.39  Aligned_cols=25  Identities=28%  Similarity=0.399  Sum_probs=21.4

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhccC
Q 048556          289 GTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       289 G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      ..-+.+|||+|.|||+++.-++..+
T Consensus        39 k~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          39 KNNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCcEEECCCCCcHHHHHHHHHHHH
Confidence            3467899999999999999998754

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=87.67  E-value=0.14  Score=45.33  Aligned_cols=19  Identities=32%  Similarity=0.363  Sum_probs=17.8

Q ss_pred             EEEEcCCCCChHHHHHHHh
Q 048556          292 AALVGQSGSGKSTVISLIE  310 (478)
Q Consensus       292 ~~ivG~sGsGKSTL~~ll~  310 (478)
                      ++++|...+|||||+..|+
T Consensus        12 i~viGHVd~GKSTL~~~Ll   30 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLL   30 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            7899999999999999994

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=87.17  E-value=0.18  Score=43.59  Aligned_cols=25  Identities=20%  Similarity=0.445  Sum_probs=21.5

Q ss_pred             CEEEEEcCCCCChHHHHHHHhccCC
Q 048556          290 TTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      .-+.+|||+|.|||+++.-|+..+.
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~ri~   68 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHHHH
Confidence            3578999999999999999987653

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=86.09  E-value=0.14  Score=46.65  Aligned_cols=19  Identities=16%  Similarity=0.240  Sum_probs=17.7

Q ss_pred             ecCCCEEEEEcCCCCChHH
Q 048556          286 IPSGTTAALVGQSGSGKST  304 (478)
Q Consensus       286 i~~G~~~~ivG~sGsGKST  304 (478)
                      +++|+.+.+.+|+|||||+
T Consensus         6 ~~~~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTT
T ss_pred             hhcCCcEEEEECCCCCHHH
Confidence            5789999999999999997

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=86.01  E-value=0.22  Score=45.33  Aligned_cols=27  Identities=26%  Similarity=0.336  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556          288 SGTTAALVGQSGSGKSTVISLIERFYD  314 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~  314 (478)
                      .+-.++++|.+.+|||||+|.|.|-..
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~~~  137 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKKNI  137 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             CceEEEEEecCccchhhhhhhhhccce
Confidence            344699999999999999999999754

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=86.00  E-value=0.16  Score=44.21  Aligned_cols=39  Identities=23%  Similarity=0.342  Sum_probs=30.7

Q ss_pred             cccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEE
Q 048556          279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV  320 (478)
Q Consensus       279 l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i  320 (478)
                      |++.==.+++-..+.++||.++|||+++..|+.+.   .|.+
T Consensus        43 l~~~l~~~PKkn~i~~~GP~~TGKS~f~~sl~~~l---~G~v   81 (205)
T d1tuea_          43 LKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI---QGAV   81 (205)
T ss_dssp             HHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH---TCEE
T ss_pred             HHHHHcCCCCceEEEEECCCCccHHHHHHHHHHHh---CCEE
Confidence            33332336888899999999999999999999997   3654

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.35  E-value=0.13  Score=45.63  Aligned_cols=24  Identities=17%  Similarity=0.167  Sum_probs=19.4

Q ss_pred             cCCCEEEEEcCCCCChHHHHHHHh
Q 048556          287 PSGTTAALVGQSGSGKSTVISLIE  310 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~ll~  310 (478)
                      -.|+-+.+++|+|||||+..-+..
T Consensus        56 l~g~~~~i~apTGsGKT~~~~~~~   79 (237)
T d1gkub1          56 LRKESFAATAPTGVGKTSFGLAMS   79 (237)
T ss_dssp             HTTCCEECCCCBTSCSHHHHHHHH
T ss_pred             HCCCCEEEEecCCChHHHHHHHHH
Confidence            468889999999999998654443

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=84.41  E-value=0.35  Score=45.83  Aligned_cols=20  Identities=25%  Similarity=0.581  Sum_probs=17.3

Q ss_pred             CCCEEEEEcCCCCChHHHHH
Q 048556          288 SGTTAALVGQSGSGKSTVIS  307 (478)
Q Consensus       288 ~G~~~~ivG~sGsGKSTL~~  307 (478)
                      .+.++.|.||.|+||||++.
T Consensus       162 ~~~~~vI~G~pGTGKTt~i~  181 (359)
T d1w36d1         162 TRRISVISGGPGTGKTTTVA  181 (359)
T ss_dssp             TBSEEEEECCTTSTHHHHHH
T ss_pred             cCCeEEEEcCCCCCceehHH
Confidence            36799999999999999874

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.83  E-value=0.24  Score=44.18  Aligned_cols=20  Identities=30%  Similarity=0.454  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q 048556          291 TAALVGQSGSGKSTVISLIE  310 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~~ll~  310 (478)
                      -++++|..++|||||..-|+
T Consensus         8 Ni~iiGHvD~GKsTl~~~ll   27 (239)
T d1f60a3           8 NVVVIGHVDSGKSTTTGHLI   27 (239)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            36899999999999998884

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=83.49  E-value=0.27  Score=45.51  Aligned_cols=21  Identities=38%  Similarity=0.658  Sum_probs=18.3

Q ss_pred             cCCCEEEEEcCCCCChHHHHH
Q 048556          287 PSGTTAALVGQSGSGKSTVIS  307 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~  307 (478)
                      +.|+...+-|.||+|||||-.
T Consensus        12 ~~~~~alfFGLSGTGKTTLs~   32 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLST   32 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHHC
T ss_pred             CCCCEEEEEccCCCCccccee
Confidence            468888999999999999763

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.04  E-value=0.21  Score=47.19  Aligned_cols=19  Identities=21%  Similarity=0.368  Sum_probs=18.1

Q ss_pred             EEEEcCCCCChHHHHHHHh
Q 048556          292 AALVGQSGSGKSTVISLIE  310 (478)
Q Consensus       292 ~~ivG~sGsGKSTL~~ll~  310 (478)
                      +||+|+.|+|||||+..|.
T Consensus        20 I~iiGhvd~GKTTL~d~Ll   38 (341)
T d1n0ua2          20 MSVIAHVDHGKSTLTDSLV   38 (341)
T ss_dssp             EEEECCGGGTHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHH
Confidence            8999999999999999995

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: ATP:corrinoid adenosyltransferase CobA
species: Salmonella typhimurium [TaxId: 90371]

Probab=82.96  E-value=0.37  Score=40.01  Aligned_cols=64  Identities=19%  Similarity=0.178  Sum_probs=46.3

Q ss_pred             HHHHHHHcC--CCCEEEEeCCCCCCCHH--HHHHHHHHHHHhcCCCeEEEEecCch--hhhhcCEEEEEe
Q 048556          408 IAIARAILK--DPRILLLDEATSALDAE--SERVVQEALDKIMINRTTVIVAHRLS--TVRNADLIAVIH  471 (478)
Q Consensus       408 l~lARall~--~~~ililDEpts~LD~~--~~~~i~~~l~~~~~~~t~i~itH~~~--~~~~~d~i~vl~  471 (478)
                      ...||..+.  +.+++||||-..+++..  ++..+.+.|++..++.-+|++-++..  .++.||.|--|.
T Consensus        83 ~~~a~~~~~~~~~dllILDEi~~Ai~~gli~~~~v~~ll~~rp~~~evVlTGr~~p~~L~e~ADlVTEm~  152 (157)
T d1g5ta_          83 WQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELR  152 (157)
T ss_dssp             HHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECC
T ss_pred             HHHHHHHhhcCccCEEeHHHHHHHHHcCCCCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhcceeeeee
Confidence            334554443  36999999999988765  89999999977445566777766654  466799997764

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=82.87  E-value=0.25  Score=44.76  Aligned_cols=17  Identities=35%  Similarity=0.585  Sum_probs=13.9

Q ss_pred             CEEEEEcCCCCChHHHH
Q 048556          290 TTAALVGQSGSGKSTVI  306 (478)
Q Consensus       290 ~~~~ivG~sGsGKSTL~  306 (478)
                      ..+.|.|+.||||||.+
T Consensus        15 ~~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          15 GPCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             SEEEECCCTTSCHHHHH
T ss_pred             CCEEEEeeCCccHHHHH
Confidence            34679999999999764

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=82.85  E-value=0.24  Score=45.40  Aligned_cols=16  Identities=31%  Similarity=0.601  Sum_probs=13.6

Q ss_pred             EEEEEcCCCCChHHHH
Q 048556          291 TAALVGQSGSGKSTVI  306 (478)
Q Consensus       291 ~~~ivG~sGsGKSTL~  306 (478)
                      .+.|.|+.||||||.+
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            4778999999999865

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=82.65  E-value=0.29  Score=45.44  Aligned_cols=21  Identities=38%  Similarity=0.658  Sum_probs=17.9

Q ss_pred             cCCCEEEEEcCCCCChHHHHH
Q 048556          287 PSGTTAALVGQSGSGKSTVIS  307 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~~  307 (478)
                      +.|+...+-|.||+|||||--
T Consensus        12 ~~~~valffGLSGTGKTTLs~   32 (318)
T d1j3ba1          12 KEGDVAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             TTCCEEEEEECTTSCHHHHTC
T ss_pred             CCCCEEEEEccCCCCcccccc
Confidence            357888999999999999764

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=82.63  E-value=0.21  Score=44.71  Aligned_cols=18  Identities=33%  Similarity=0.475  Sum_probs=17.2

Q ss_pred             EEEEcCCCCChHHHHHHH
Q 048556          292 AALVGQSGSGKSTVISLI  309 (478)
Q Consensus       292 ~~ivG~sGsGKSTL~~ll  309 (478)
                      ++|+|..++|||||+..|
T Consensus        27 i~iiGHVD~GKSTL~~~L   44 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNI   44 (245)
T ss_dssp             EEEEECGGGTHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHH
Confidence            799999999999999988

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.16  E-value=0.12  Score=44.50  Aligned_cols=20  Identities=25%  Similarity=0.297  Sum_probs=16.7

Q ss_pred             cCCCEEEEEcCCCCChHHHH
Q 048556          287 PSGTTAALVGQSGSGKSTVI  306 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~  306 (478)
                      ..|+-+.+.+|+|||||+..
T Consensus        38 ~~~~~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          38 FSGKNLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             TTCSCEEEECSSHHHHHHHH
T ss_pred             HcCCCEEEEcCCCCchhHHH
Confidence            35777889999999999864

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=81.73  E-value=0.37  Score=43.07  Aligned_cols=28  Identities=29%  Similarity=0.434  Sum_probs=23.2

Q ss_pred             ecCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556          286 IPSGTTAALVGQSGSGKSTVISLIERFY  313 (478)
Q Consensus       286 i~~G~~~~ivG~sGsGKSTL~~ll~g~~  313 (478)
                      .+.+.-|.|.||.|+||+++++.|-..-
T Consensus        20 a~~~~pvlI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2          20 SCAECPVLITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             TTCCSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             hCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence            3456778999999999999999996543

>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=81.49  E-value=16  Score=31.65  Aligned_cols=74  Identities=8%  Similarity=-0.125  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556           97 TAGVMSTVITKLASRGQTAYSIAAAVAEQ-TIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAF  171 (478)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (478)
                      +.........+..++..+...+..+.... ..+.++-++.-..-..+ +.+.+..++..+...+............
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e-~~~~~~~~~~~~~~~~~~~k~~~~~~~~  247 (323)
T d2hyda2         173 FYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIE-DNEAKNFDKKNTNFLTRALKHTRWNAYS  247 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCCchhhhHhhh-ccchhhhhcccccccchhhHHhhhhhhc
Confidence            33444445555555555444444444443 33344444444333322 2333333443333333333333333333

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=80.92  E-value=0.39  Score=44.62  Aligned_cols=20  Identities=35%  Similarity=0.635  Sum_probs=18.0

Q ss_pred             cCCCEEEEEcCCCCChHHHH
Q 048556          287 PSGTTAALVGQSGSGKSTVI  306 (478)
Q Consensus       287 ~~G~~~~ivG~sGsGKSTL~  306 (478)
                      +.|+...+-|-||+|||||-
T Consensus        12 ~~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          12 KQGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TTCCEEEEECCTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            46788899999999999998

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=80.69  E-value=0.22  Score=43.02  Aligned_cols=43  Identities=9%  Similarity=0.183  Sum_probs=31.4

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchh
Q 048556          417 DPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLST  460 (478)
Q Consensus       417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~  460 (478)
                      +.+|+|+||+ -.|...+...+.+.|.+-.++...|++|++.+-
T Consensus        79 ~~KviIId~a-d~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~  121 (198)
T d2gnoa2          79 TRKYVIVHDC-ERMTQQAANAFLKALEEPPEYAVIVLNTRRWHY  121 (198)
T ss_dssp             SSEEEEETTG-GGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGG
T ss_pred             CCEEEEEeCc-cccchhhhhHHHHHHhCCCCCceeeeccCChhh
Confidence            4579999985 456777777888888764445567788888764