Citrus Sinensis ID: 048563

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-----
Protein Sequence
LKKGNVDPGLISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQTVDSETKNHTRLNNVWGHNDLYLVSRVVVRVNGRTRFNFTVLPPSAFYPVDWRRVQSFFMRPRNEQHSKLLHKKLELINKR
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHHHHHccEEEEccEEEEEccccccccccccccccccccccccHHHHHcccHHHHHHHHHHHHccccccEEEEccccEEEccccccccccccccccHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHcHHHHHHHHHHHHHccEEEcccEEEEccccccccHHHHHHHcHcccccHHHHHHHccccHHHHHHHHHHHcccccccEEEccccccccccHHHHHHHccccccHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
lkkgnvdpglislgqnSSNLLRLALLYKFggiyldpnVIVLENLSKLKntigaqtvdsetknhtrlnnvwghndLYLVSRVVVRVNgrtrfnftvlppsafypvdwRRVQsffmrprneqHSKLLHKKLELINKR
Flexible Loop (DISEMBL)
lkkgnvdpglislGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIgaqtvdsetknhtrlnnvwghndlyLVSRVVVRVNGRTRfnftvlppsafypvDWRRVQSFFmrprneqhskllhkklelinkr
Low Complexity Region (SEG)
LKKGNVDPGLISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQTVDSETKNHTRLNNVWGHNDLYLVSRVVVRVNGRTRFNFTVLPPSAFYPVDWRRVQSFFMRPRNEQHSKLLHKKLELINKR
Disordered region (IsUnstruct)
****************SSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQTVDSETKNHTRLNNVWGHNDLYLVSRVVVRVNGRTRFNFTVLPPSAFYPVDWRRVQSFFM*********************
Disordered Region (DISOPRED)
*********LISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQTVDSETKNHTRLNNVWGHNDLYLVSRVVVRVNGRTRFNFTVLPPSAFYPVDWRRVQSFFMRPRNEQHSKLLHKKLELIN**
Disordered Region (DISEMBL)
LKKGNVDPGLISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQTVDSETKNHTRLNNVWGHNDLYLVSRVVVRVNGRTRFNFTVLPPSAFYPVDWRRVQSFFMRPRNEQHSKLLHKKLELINKR
Disordered Region (DISPRO)
****NVDPGLISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQTVDSETKNHTRLNNVWGHNDLYLVSRVVVRVNGRTRFNFTVLPPSAFYPVDWRRVQSFFMRPRNEQHSKLLHKKLELIN**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LKKGNVDPGLISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQTVDSETKNHTRLNNVWGHNDLYLVSRVVVRVNGRTRFNFTVLPPSAFYPVDWRRVQSFFMRPRNEQHSKLLHKKLELINKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	135	2.2.26 [Sep-21-2011]
Q9N289	218	Lactosylceramide 4-alpha-	N/A	no	0.888	0.550	0.302	1e-11
Q9N291	353	Lactosylceramide 4-alpha-	yes	no	0.888	0.339	0.302	2e-11
Q67BJ4	359	Lactosylceramide 4-alpha-	yes	no	0.8	0.300	0.343	2e-11
Q9NPC4	353	Lactosylceramide 4-alpha-	yes	no	0.888	0.339	0.302	2e-11
Q9JI93	360	Lactosylceramide 4-alpha-	yes	no	0.859	0.322	0.317	4e-11
Q9N290	327	Lactosylceramide 4-alpha-	N/A	no	0.888	0.366	0.295	5e-11
P0C8Q4	644	Uncharacterized protein A	no	no	0.829	0.173	0.312	7e-09

>sp|Q9N289|A4GAT_PONPY Lactosylceramide 4-alpha-galactosyltransferase (Fragment) OS=Pongo pygmaeus GN=A4GALT PE=3 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 29/149 (19%)

Query: 3   KGNVDPGLISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQT------- 55
           +G  +P L+ +  ++S   R+AL++KFGGIYLD + IVL+NL  L N +G Q+       
Sbjct: 28  QGRWEPYLLPVLSDAS---RIALMWKFGGIYLDTDFIVLKNLRNLTNVLGTQSRYVLNGA 84

Query: 56  VDSETKNHTRL------------NNVWGHNDLYLVSRVVVR-------VNGRTRFNFTVL 96
             +  + H  +              +WGH    L++RV  +          R     T L
Sbjct: 85  FLAFQRRHEFMALCMRDFVDHYNGWIWGHQGPQLLTRVFKKWCSIRSLAESRACRGVTTL 144

Query: 97  PPSAFYPVDWRRVQSFFMRPRNEQHSKLL 125
           PP AFYP+ W+  + +F     E+  +LL
Sbjct: 145 PPEAFYPIPWQDWKKYFEDISPEELPRLL 173

Catalyzes the transfer of galactose to lactosylceramide and galactosylceramide. Necessary for the synthesis of the receptor for bacterial verotoxins.
Pongo pygmaeus (taxid: 9600)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 2EC: 2EC: 8

>sp|Q9N291|A4GAT_PANTR Lactosylceramide 4-alpha-galactosyltransferase OS=Pan troglodytes GN=A4GALT PE=3 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 29/149 (19%)

Query: 3   KGNVDPGLISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQT------- 55
           +G  +P L+ +  ++S   R+AL++KFGGIYLD + IVL+NL  L N +G Q+       
Sbjct: 163 QGRWEPYLLPVLSDAS---RIALMWKFGGIYLDTDFIVLKNLRNLTNVLGTQSRYVLNGA 219

Query: 56  VDSETKNHTRL------------NNVWGHNDLYLVSRVVVR-------VNGRTRFNFTVL 96
             +  + H  +              +WGH    L++RV  +          R+    T L
Sbjct: 220 FLAFERRHEFMALCMRDFVDHYNGWIWGHQGPQLLTRVFKKWCSIRSLAESRSCRGVTTL 279

Query: 97  PPSAFYPVDWRRVQSFFMRPRNEQHSKLL 125
           PP AFYP+ W+  + +F     E+  +LL
Sbjct: 280 PPEAFYPIPWQDWKKYFEDINPEELPRLL 308

Catalyzes the transfer of galactose to lactosylceramide and galactosylceramide. Necessary for the synthesis of the receptor for bacterial verotoxins.

Pan troglodytes (taxid: 9598)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 8

>sp|Q67BJ4|A4GAT_MOUSE Lactosylceramide 4-alpha-galactosyltransferase OS=Mus musculus GN=A4galt PE=2 SV=1

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 67/134 (50%), Gaps = 26/134 (19%)

Query: 18  SNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQT--------VDSETKN------- 62
           S+  R+ALL+KFGGIYLD + IVL+NL  L NT+G Q+        +  E K+       
Sbjct: 181 SDASRIALLWKFGGIYLDTDFIVLKNLLNLTNTLGIQSRYVLNGAFLAFERKHEFLALCL 240

Query: 63  HTRLNN----VWGHNDLYLVSRVVVRVNGRTRFN-------FTVLPPSAFYPVDWRRVQS 111
           H  + N    +WGH    L++RV  +                T LPP AFYP+ W+  + 
Sbjct: 241 HDFVANYNGWIWGHQGPQLLTRVFKKWCSIQSLEKSHACRGVTALPPEAFYPIPWQNWKK 300

Query: 112 FFMRPRNEQHSKLL 125
           +F     E+ ++LL
Sbjct: 301 YFEDISPEELTQLL 314

Necessary for the biosynthesis of the Pk antigen of blood histogroup P. Catalyzes the transfer of galactose to lactosylceramide and galactosylceramide. Necessary for the synthesis of the receptor for bacterial verotoxins.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 8

>sp|Q9NPC4|A4GAT_HUMAN Lactosylceramide 4-alpha-galactosyltransferase OS=Homo sapiens GN=A4GALT PE=2 SV=1

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 29/149 (19%)

Query: 3   KGNVDPGLISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQT------- 55
           +G  +P L+ +  ++S   R+AL++KFGGIYLD + IVL+NL  L N +G Q+       
Sbjct: 163 QGRWEPYLLPVLSDAS---RIALMWKFGGIYLDTDFIVLKNLRNLTNVLGTQSRYVLNGA 219

Query: 56  VDSETKNHTRL------------NNVWGHNDLYLVSRVVVR-------VNGRTRFNFTVL 96
             +  + H  +              +WGH    L++RV  +          R     T L
Sbjct: 220 FLAFERRHEFMALCMRDFVDHYNGWIWGHQGPQLLTRVFKKWCSIRSLAESRACRGVTTL 279

Query: 97  PPSAFYPVDWRRVQSFFMRPRNEQHSKLL 125
           PP AFYP+ W+  + +F     E+  +LL
Sbjct: 280 PPEAFYPIPWQDWKKYFEDINPEELPRLL 308

Necessary for the biosynthesis of the Pk antigen of blood histogroup P. Catalyzes the transfer of galactose to lactosylceramide and galactosylceramide. Necessary for the synthesis of the receptor for bacterial verotoxins.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 8

>sp|Q9JI93|A4GAT_RAT Lactosylceramide 4-alpha-galactosyltransferase OS=Rattus norvegicus GN=A4galt PE=1 SV=1

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 70/145 (48%), Gaps = 29/145 (20%)

Query: 7   DPGLISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQT-------VDSE 59
           +P L+ +  ++S   R+ALL+KFGGIYLD + IVL+NL  L N +G Q+         + 
Sbjct: 174 EPYLLPVLSDAS---RIALLWKFGGIYLDTDFIVLKNLRNLTNMLGIQSRYVLNGAFLAF 230

Query: 60  TKNHTRL------------NNVWGHNDLYLVSRVVVRV-------NGRTRFNFTVLPPSA 100
            + H  L              +WGH    L++RV  +          R     T LPP A
Sbjct: 231 ERKHEFLALCIRDFVAHYNGWIWGHQGPQLLTRVFKKWCSIHSLKESRACRGVTALPPEA 290

Query: 101 FYPVDWRRVQSFFMRPRNEQHSKLL 125
           FYP+ W+  + +F     E+ ++LL
Sbjct: 291 FYPIPWQNWKKYFEDVSPEELAQLL 315

Necessary for the biosynthesis of the Pk antigen of blood histogroup P. Catalyzes the transfer of galactose to lactosylceramide and galactosylceramide. Necessary for the synthesis of the receptor for bacterial verotoxins.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 8

>sp|Q9N290|A4GAT_GORGO Lactosylceramide 4-alpha-galactosyltransferase (Fragment) OS=Gorilla gorilla gorilla GN=A4GALT PE=3 SV=1

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 29/149 (19%)

Query: 3   KGNVDPGLISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQT---VDSE 59
           +G  +P L+ +  ++S   R+AL++KFGGIYLD + IVL+NL  L N +G Q+   ++  
Sbjct: 137 QGRWEPYLLPVLSDAS---RIALMWKFGGIYLDTDFIVLKNLRNLTNVLGTQSRYVLNGA 193

Query: 60  TKNHTRLNN----------------VWGHNDLYLVSRVVVR-------VNGRTRFNFTVL 96
                R +                 +WGH    L++RV  +          R     T L
Sbjct: 194 FLAFERXHEFMALCMXDFVDHYNGWIWGHQGPQLLTRVFKKWCSIRSLAESRACRGVTTL 253

Query: 97  PPSAFYPVDWRRVQSFFMRPRNEQHSKLL 125
           PP AFYP+ W+  + +F     E+  +L 
Sbjct: 254 PPEAFYPIPWQDWKKYFEDINPEELPRLF 282

Catalyzes the transfer of galactose to lactosylceramide and galactosylceramide. Necessary for the synthesis of the receptor for bacterial verotoxins.

Gorilla gorilla gorilla (taxid: 9595)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 8

>sp|P0C8Q4|Y4990_ARATH Uncharacterized protein At4g19900 OS=Arabidopsis thaliana GN=At4g19900 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 73/147 (49%), Gaps = 35/147 (23%)

Query: 18  SNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQ-TVDSETKNH------------- 63
           S L+RLA LYK+GG+YLD +VIVL +LS L+NTIG +  V  E+ N              
Sbjct: 463 SELVRLAALYKYGGVYLDSDVIVLGSLSSLRNTIGMEDQVAGESLNGAVMSFEKKSPFLL 522

Query: 64  --------TRLNNVWGHNDLYLVSRVVVR-VNGRTR----FNFTVLPPSAFYPVDWRRVQ 110
                   T  +     N   L++RV  R +NG+ R        + P S F+P++ +++ 
Sbjct: 523 ECLNEYYLTYDDKCLRCNGADLLTRVAKRFLNGKNRRMNQQELNIRPSSVFFPINSQQIT 582

Query: 111 SFFMRP--------RNEQHSKLLHKKL 129
           ++F  P        ++E   K+L++ L
Sbjct: 583 NYFAYPAIEDERSQQDESFKKILNESL 609

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
224113967	308	predicted protein [Populus trichocarpa]	0.977	0.428	0.601	2e-44
224078926	308	predicted protein [Populus trichocarpa]	0.977	0.428	0.563	2e-39
255555985	364	lactosylceramide 4-alpha-galactosyltrans	0.977	0.362	0.601	9e-38
297740224	495	unnamed protein product [Vitis vinifera]	0.992	0.270	0.493	4e-35
147853779	413	hypothetical protein VITISV_030953 [Viti	1.0	0.326	0.490	4e-34
225440658	416	PREDICTED: uncharacterized protein At4g1	1.0	0.324	0.490	5e-34
356546655	421	PREDICTED: uncharacterized protein At4g1	0.977	0.313	0.552	3e-33
359497312	451	PREDICTED: uncharacterized protein At4g1	0.955	0.286	0.548	4e-33
356494971	420	PREDICTED: uncharacterized protein At4g1	0.955	0.307	0.477	4e-33
357446543	439	Lactosylceramide 4-alpha-galactosyltrans	1.0	0.307	0.521	8e-33

>gi|224113967|ref|XP_002316629.1| predicted protein [Populus trichocarpa] gi|222859694|gb|EEE97241.1| predicted protein [Populus trichocarpa]

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 95/158 (60%), Positives = 109/158 (68%), Gaps = 26/158 (16%)

Query: 1   LKKGNVDPGLISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQTVDSET 60
           LKKGNV PG +SLGQN SNLLRLALLYKFGGIY+D +VIVL+  +KL+N IGAQT+D ET
Sbjct: 108 LKKGNVSPGEVSLGQNMSNLLRLALLYKFGGIYMDTDVIVLKRFTKLRNVIGAQTIDLET 167

Query: 61  KNHTRLNNV--------------------------WGHNDLYLVSRVVVRVNGRTRFNFT 94
           +N +RLNN                           WGHN  YLVSRVV RVNGR  FNFT
Sbjct: 168 RNWSRLNNAVLIFDKKHPLLFKFIEEFALTFDGNKWGHNGPYLVSRVVSRVNGRPGFNFT 227

Query: 95  VLPPSAFYPVDWRRVQSFFMRPRNEQHSKLLHKKLELI 132
           VLPP AFYPVDW R++SFF  PR++ HS  LH+KLE I
Sbjct: 228 VLPPPAFYPVDWSRIRSFFRGPRDKVHSTWLHEKLEQI 265

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078926|ref|XP_002305683.1| predicted protein [Populus trichocarpa] gi|222848647|gb|EEE86194.1| predicted protein [Populus trichocarpa]

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 89/158 (56%), Positives = 102/158 (64%), Gaps = 26/158 (16%)

Query: 1   LKKGNVDPGLISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQTVDSET 60
           LKKGNV PG +SLGQN SNLLRLALLYKFGGIY+D +VIVL+ L+KL+N IGAQ++D E 
Sbjct: 108 LKKGNVSPGEVSLGQNMSNLLRLALLYKFGGIYMDTDVIVLKTLTKLRNAIGAQSIDLEN 167

Query: 61  KNHTRLNNV--------------------------WGHNDLYLVSRVVVRVNGRTRFNFT 94
              +RLNN                           WGHN  YLVSRVV RVN    FNFT
Sbjct: 168 GKWSRLNNAVLIFDKKHPLLFKFIEEFALTFDGNKWGHNGPYLVSRVVSRVNRTPGFNFT 227

Query: 95  VLPPSAFYPVDWRRVQSFFMRPRNEQHSKLLHKKLELI 132
           VLPPSAFYPV+W R++S F  P  + HS  L KKLE I
Sbjct: 228 VLPPSAFYPVNWSRIKSLFKGPEGKAHSTWLRKKLEQI 265

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555985|ref|XP_002519027.1| lactosylceramide 4-alpha-galactosyltransferase, putative [Ricinus communis] gi|223541690|gb|EEF43238.1| lactosylceramide 4-alpha-galactosyltransferase, putative [Ricinus communis]

 Score =  161 bits (407), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 95/158 (60%), Positives = 107/158 (67%), Gaps = 26/158 (16%)

Query: 1   LKKGNVDPGLISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQTVDSET 60
           LKKGNVDPG +SLGQN SNLLRLALLYKFGG YLD +VIVL++  KL+N IGAQT+D ET
Sbjct: 157 LKKGNVDPGEVSLGQNLSNLLRLALLYKFGGTYLDTDVIVLKSFGKLRNIIGAQTIDLET 216

Query: 61  KNHTRLNNV--------------------------WGHNDLYLVSRVVVRVNGRTRFNFT 94
            N +RLNN                           WGHN  YLVSRVV RV+GR  FNFT
Sbjct: 217 GNWSRLNNAVLIFDKKHPLLFKFIQEFALTFNGNKWGHNGPYLVSRVVSRVSGRPGFNFT 276

Query: 95  VLPPSAFYPVDWRRVQSFFMRPRNEQHSKLLHKKLELI 132
           VLPPSAFYPV+W R+ S F  PR+E HSK L +KLE I
Sbjct: 277 VLPPSAFYPVNWSRIGSIFRGPRDELHSKWLQRKLEQI 314

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740224|emb|CBI30406.3| unnamed protein product [Vitis vinifera]

 Score =  152 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 79/160 (49%), Positives = 97/160 (60%), Gaps = 26/160 (16%)

Query: 1   LKKGNVDPGLISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQTVDSET 60
           +K GN DPG I L QN SNLLRLA+LYK+GG+YLD + I+L   S L+NTIGAQ++D  +
Sbjct: 296 MKSGNKDPGEIPLAQNLSNLLRLAVLYKYGGVYLDTDFIILNKFSSLRNTIGAQSIDPVS 355

Query: 61  KNHTRLNNV--------------------------WGHNDLYLVSRVVVRVNGRTRFNFT 94
            N +RLNN                           WGHN  YLVSRVV RV  R  +NFT
Sbjct: 356 GNWSRLNNAVLIFDKNHPLVYKFIEEFALTFDGNKWGHNGPYLVSRVVNRVARRPGYNFT 415

Query: 95  VLPPSAFYPVDWRRVQSFFMRPRNEQHSKLLHKKLELINK 134
           VLPP AFYPVDW R+  +F RP+++  SK L  KL  + K
Sbjct: 416 VLPPMAFYPVDWNRIGDYFPRPKDQVTSKWLETKLLQLGK 455

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147853779|emb|CAN83821.1| hypothetical protein VITISV_030953 [Vitis vinifera]

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 79/161 (49%), Positives = 97/161 (60%), Gaps = 26/161 (16%)

Query: 1   LKKGNVDPGLISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQTVDSET 60
           +K GN DPG I L QN SNLLRLA+LYK+GG+YLD + I+L   S L+NTIGAQ++D  +
Sbjct: 214 MKSGNKDPGEIPLAQNLSNLLRLAVLYKYGGVYLDTDFIILNKFSSLRNTIGAQSIDPVS 273

Query: 61  KNHTRLNNV--------------------------WGHNDLYLVSRVVVRVNGRTRFNFT 94
            N +RLNN                           WGHN  YLVSRVV RV  R  +NFT
Sbjct: 274 GNWSRLNNAVLIFDKNHPLVYKFIEEFALTFDGNKWGHNGPYLVSRVVNRVARRPGYNFT 333

Query: 95  VLPPSAFYPVDWRRVQSFFMRPRNEQHSKLLHKKLELINKR 135
           VLPP AFYPVDW R+  +F RP+++  SK L  KL  + K 
Sbjct: 334 VLPPMAFYPVDWNRIGDYFPRPKDQVTSKWLETKLLQLGKE 374

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440658|ref|XP_002274455.1| PREDICTED: uncharacterized protein At4g19900-like [Vitis vinifera]

 Score =  149 bits (375), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 79/161 (49%), Positives = 97/161 (60%), Gaps = 26/161 (16%)

Query: 1   LKKGNVDPGLISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQTVDSET 60
           +K GN DPG I L QN SNLLRLA+LYK+GG+YLD + I+L   S L+NTIGAQ++D  +
Sbjct: 217 MKSGNKDPGEIPLAQNLSNLLRLAVLYKYGGVYLDTDFIILNKFSSLRNTIGAQSIDPVS 276

Query: 61  KNHTRLNNV--------------------------WGHNDLYLVSRVVVRVNGRTRFNFT 94
            N +RLNN                           WGHN  YLVSRVV RV  R  +NFT
Sbjct: 277 GNWSRLNNAVLIFDKNHPLVYKFIEEFALTFDGNKWGHNGPYLVSRVVNRVARRPGYNFT 336

Query: 95  VLPPSAFYPVDWRRVQSFFMRPRNEQHSKLLHKKLELINKR 135
           VLPP AFYPVDW R+  +F RP+++  SK L  KL  + K 
Sbjct: 337 VLPPMAFYPVDWNRIGDYFPRPKDQVTSKWLETKLLQLGKE 377

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546655|ref|XP_003541739.1| PREDICTED: uncharacterized protein At4g19900-like [Glycine max]

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 89/161 (55%), Positives = 106/161 (65%), Gaps = 29/161 (18%)

Query: 1   LKKGNVDPGLISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQTVDSET 60
           LK+GNVDPG +SLGQN SNLLRLALLYKFGG Y+D +V+VL++ SKL+NTIGAQ  D++T
Sbjct: 229 LKEGNVDPGEVSLGQNLSNLLRLALLYKFGGTYIDLDVVVLKSFSKLRNTIGAQNFDTKT 288

Query: 61  KNHTRLNNV--------------------------WGHNDLYLVSRVVVRVNGRTRFNFT 94
              +RLNN                           WGHN  YL+SRVV RV+GR  FNFT
Sbjct: 289 GKWSRLNNAVLIFDKKHPLLFKFIEEFALTFDGNKWGHNGPYLISRVVSRVSGRPGFNFT 348

Query: 95  VLPPSAFYPVDWRRVQSFFMRPRNEQHSKLLHKKLELINKR 135
           VLPPSAFYPVDWR ++S F   R+E  SK L  K+E I K 
Sbjct: 349 VLPPSAFYPVDWRGIRSLF---RDEISSKWLINKMEQIRKE 386

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497312|ref|XP_003635482.1| PREDICTED: uncharacterized protein At4g19900-like [Vitis vinifera] gi|296088928|emb|CBI38494.3| unnamed protein product [Vitis vinifera]

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 85/155 (54%), Positives = 102/155 (65%), Gaps = 26/155 (16%)

Query: 1   LKKGNVDPGLISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQTVDSET 60
           LKK  ++PG ISLGQN SNLLRLALLYKFGGIY+D + +VL++ S L+N IGAQT+D  T
Sbjct: 251 LKKRKINPGEISLGQNLSNLLRLALLYKFGGIYMDTDFVVLKSFSGLRNVIGAQTMDLAT 310

Query: 61  KNHTRLNNV--------------------------WGHNDLYLVSRVVVRVNGRTRFNFT 94
            N +RLNN                           WGHN  YLVSRVV +++GRT FNFT
Sbjct: 311 GNWSRLNNAVMIFDEQHPLLLKFIEEFALTFNGNKWGHNGPYLVSRVVSKISGRTGFNFT 370

Query: 95  VLPPSAFYPVDWRRVQSFFMRPRNEQHSKLLHKKL 129
           VLPP AFYPVDW ++ SFF  PR++ HSK L  KL
Sbjct: 371 VLPPPAFYPVDWSKIPSFFKGPRDKPHSKWLAGKL 405

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356494971|ref|XP_003516354.1| PREDICTED: uncharacterized protein At4g19900-like [Glycine max]

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 99/155 (63%), Gaps = 26/155 (16%)

Query: 1   LKKGNVDPGLISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQTVDSET 60
           L+KG  DPG I L QN SNL+RLA+LYK+GGIY+D + IVL+ L+ L+N+IGAQ+++ ++
Sbjct: 216 LRKGRKDPGEIPLSQNLSNLIRLAVLYKYGGIYIDTDFIVLKPLTGLRNSIGAQSMNLDS 275

Query: 61  KNHTRLNNV--------------------------WGHNDLYLVSRVVVRVNGRTRFNFT 94
           K+ TRLNN                           WGHN  YLVSRV+ R+  R  FNFT
Sbjct: 276 KHWTRLNNAVLIFDIGHQLLHRFINEFALTFDGNKWGHNGPYLVSRVIKRLGKRHDFNFT 335

Query: 95  VLPPSAFYPVDWRRVQSFFMRPRNEQHSKLLHKKL 129
           VLPP AFYPVDW ++   FM+P+ ++ SK +  KL
Sbjct: 336 VLPPMAFYPVDWNKINGLFMKPKTQEESKWVEAKL 370

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446543|ref|XP_003593549.1| Lactosylceramide 4-alpha-galactosyltransferase [Medicago truncatula] gi|355482597|gb|AES63800.1| Lactosylceramide 4-alpha-galactosyltransferase [Medicago truncatula]

 Score =  145 bits (365), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 84/161 (52%), Positives = 107/161 (66%), Gaps = 26/161 (16%)

Query: 1   LKKGNVDPGLISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQTVDSET 60
           L +GNV+PG ISLGQN SNLLRL+LLYKFGGIY+D ++I++++ SK +NTIGAQ +D +T
Sbjct: 243 LIQGNVNPGEISLGQNLSNLLRLSLLYKFGGIYIDADIIIMKSFSKFRNTIGAQNIDVKT 302

Query: 61  KNHTRLNNV--------------------------WGHNDLYLVSRVVVRVNGRTRFNFT 94
           K  +RLNN                           WGHN  YL+SRVV RV+GR  +NF+
Sbjct: 303 KKWSRLNNAVLIFDKKHPLLLKFIEEFALTFDGNKWGHNGPYLISRVVSRVSGREGYNFS 362

Query: 95  VLPPSAFYPVDWRRVQSFFMRPRNEQHSKLLHKKLELINKR 135
           V+PPSAFYPVDWR ++S F  P +E HSK L KK+  I K 
Sbjct: 363 VVPPSAFYPVDWRGIKSLFRGPGDEIHSKWLVKKMVQIRKE 403

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
TAIR|locus:2206006	435	AT1G61050 [Arabidopsis thalian	0.503	0.156	0.676	1.3e-34
TAIR|locus:2150104	407	AT5G01250 [Arabidopsis thalian	0.503	0.167	0.602	2.6e-31
TAIR|locus:2042897	405	AT2G38150 [Arabidopsis thalian	0.562	0.187	0.539	6.9e-30
TAIR|locus:4010713690	380	AT2G38152 [Arabidopsis thalian	0.503	0.178	0.579	2.4e-28
TAIR|locus:2095264	411	AT3G09020 [Arabidopsis thalian	0.6	0.197	0.488	5.6e-16
UNIPROTKB|Q9N291	353	A4GALT "Lactosylceramide 4-alp	0.370	0.141	0.452	6.4e-13
UNIPROTKB|Q9NPC4	353	A4GALT "Lactosylceramide 4-alp	0.370	0.141	0.452	8.1e-13
MGI|MGI:3512453	359	A4galt "alpha 1,4-galactosyltr	0.281	0.105	0.605	1.1e-12
RGD|621583	360	A4galt "alpha 1,4-galactosyltr	0.281	0.105	0.578	1.4e-12
UNIPROTKB|Q9N290	327	A4GALT "Lactosylceramide 4-alp	0.370	0.152	0.452	1.6e-12

TAIR|locus:2206006 AT1G61050 [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
 Identities = 46/68 (67%), Positives = 54/68 (79%)

Query:     1 LKKGNVDPGLISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQTVDSET 60
             LKKG + PG+I L QN SNLLRL LLYK+GGIYLD +VI+L++LS L N IGAQTVD  T
Sbjct:   233 LKKGTLSPGVIPLEQNLSNLLRLVLLYKYGGIYLDTDVIILKSLSNLHNVIGAQTVDPVT 292

Query:    61 KNHTRLNN 68
             K  +RLNN
Sbjct:   293 KKWSRLNN 300

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0005795 "Golgi stack" evidence=IEA

GO:0008378 "galactosyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=ISS

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

TAIR|locus:2150104 AT5G01250 [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 2.6e-31, Sum P(2) = 2.6e-31
 Identities = 41/68 (60%), Positives = 52/68 (76%)

Query:     1 LKKGNVDPGLISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQTVDSET 60
             +K G  DPG ISL QN SNL+RLA LYK+GG+YLD ++IVL++   L+N IGAQT+D  +
Sbjct:   207 IKSGKRDPGKISLAQNLSNLMRLAYLYKYGGVYLDTDMIVLKSFKGLRNVIGAQTLDPSS 266

Query:    61 KNHTRLNN 68
              N TRLNN
Sbjct:   267 TNWTRLNN 274

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0005795 "Golgi stack" evidence=IEA

GO:0008378 "galactosyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=ISS

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

TAIR|locus:2042897 AT2G38150 [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 6.9e-30, Sum P(2) = 6.9e-30
 Identities = 41/76 (53%), Positives = 54/76 (71%)

Query:     1 LKKGNVDPGLISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQTVDSET 60
             LK GN+DPG I L  N S+L RLA+LYK+GG+YLD ++I L +++ L+N IGAQ+ D  T
Sbjct:   203 LKSGNMDPGSIPLFMNLSDLTRLAVLYKYGGVYLDTDIIFLNDMTGLRNAIGAQSSDPAT 262

Query:    61 KNHTRLNNVWGHNDLY 76
             K  TRLNN     D+Y
Sbjct:   263 KRWTRLNNAVMVFDIY 278

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0005795 "Golgi stack" evidence=IEA

GO:0008378 "galactosyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=ISS

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

TAIR|locus:4010713690 AT2G38152 [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 2.4e-28, Sum P(2) = 2.4e-28
 Identities = 40/69 (57%), Positives = 49/69 (71%)

Query:     1 LKKGNVDPGLISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQTV-DSE 59
             +K    DPG I L QN SNL RLA LYK+GG+YLD + IV  +   LKN+IGAQTV + +
Sbjct:   181 MKSCKRDPGRIPLHQNLSNLARLAFLYKYGGVYLDTDFIVTRSFKGLKNSIGAQTVVEGD 240

Query:    60 TKNHTRLNN 68
             +KN TRLNN
Sbjct:   241 SKNWTRLNN 249

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0005795 "Golgi stack" evidence=IEA

GO:0008378 "galactosyltransferase activity" evidence=IEA

TAIR|locus:2095264 AT3G09020 [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 5.6e-16, P = 5.6e-16
 Identities = 41/84 (48%), Positives = 60/84 (71%)

Query:     1 LKKGNVDPGLISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQTVDSET 60
             ++ G  DPG ISL QN SNL+RLA L+KFGG+YLD ++IVL++   L+N IGAQT++  +
Sbjct:   211 IQTGKRDPGKISLAQNLSNLMRLAYLFKFGGVYLDTDMIVLKSFKTLRNVIGAQTLEPVS 270

Query:    61 KNHTRLNN---VWGHNDLYLVSRV 81
             +N TRLNN   ++  N  +L+  +
Sbjct:   271 RNWTRLNNAVLIFDKNHPFLLKSI 294

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008378 "galactosyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=ISS

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

UNIPROTKB|Q9N291 A4GALT "Lactosylceramide 4-alpha-galactosyltransferase" [Pan troglodytes (taxid:9598)]

 Score = 112 (44.5 bits), Expect = 6.4e-13, Sum P(2) = 6.4e-13
 Identities = 24/53 (45%), Positives = 37/53 (69%)

Query:     3 KGNVDPGLISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQT 55
             +G  +P L+ +  ++S   R+AL++KFGGIYLD + IVL+NL  L N +G Q+
Sbjct:   163 QGRWEPYLLPVLSDAS---RIALMWKFGGIYLDTDFIVLKNLRNLTNVLGTQS 212

GO:0008378 "galactosyltransferase activity" evidence=ISS

UNIPROTKB|Q9NPC4 A4GALT "Lactosylceramide 4-alpha-galactosyltransferase" [Homo sapiens (taxid:9606)]

 Score = 112 (44.5 bits), Expect = 8.1e-13, Sum P(2) = 8.1e-13
 Identities = 24/53 (45%), Positives = 37/53 (69%)

Query:     3 KGNVDPGLISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQT 55
             +G  +P L+ +  ++S   R+AL++KFGGIYLD + IVL+NL  L N +G Q+
Sbjct:   163 QGRWEPYLLPVLSDAS---RIALMWKFGGIYLDTDFIVLKNLRNLTNVLGTQS 212

GO:0005795 "Golgi stack" evidence=IEA

GO:0050512 "lactosylceramide 4-alpha-galactosyltransferase activity" evidence=IEA

GO:0006486 "protein glycosylation" evidence=IEA

GO:0008378 "galactosyltransferase activity" evidence=IDA

GO:0030173 "integral to Golgi membrane" evidence=NAS

GO:0006688 "glycosphingolipid biosynthetic process" evidence=NAS

GO:0007009 "plasma membrane organization" evidence=IDA

GO:0016020 "membrane" evidence=IDA

MGI|MGI:3512453 A4galt "alpha 1,4-galactosyltransferase" [Mus musculus (taxid:10090)]

 Score = 114 (45.2 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
 Identities = 23/38 (60%), Positives = 30/38 (78%)

Query:    18 SNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQT 55
             S+  R+ALL+KFGGIYLD + IVL+NL  L NT+G Q+
Sbjct:   181 SDASRIALLWKFGGIYLDTDFIVLKNLLNLTNTLGIQS 218

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005795 "Golgi stack" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0007009 "plasma membrane organization" evidence=ISO

GO:0008152 "metabolic process" evidence=ISO

GO:0008378 "galactosyltransferase activity" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0050512 "lactosylceramide 4-alpha-galactosyltransferase activity" evidence=IEA

RGD|621583 A4galt "alpha 1,4-galactosyltransferase" [Rattus norvegicus (taxid:10116)]

 Score = 109 (43.4 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
 Identities = 22/38 (57%), Positives = 29/38 (76%)

Query:    18 SNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQT 55
             S+  R+ALL+KFGGIYLD + IVL+NL  L N +G Q+
Sbjct:   182 SDASRIALLWKFGGIYLDTDFIVLKNLRNLTNMLGIQS 219

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005795 "Golgi stack" evidence=IEA

GO:0006486 "protein glycosylation" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0007009 "plasma membrane organization" evidence=IEA;ISO

GO:0008378 "galactosyltransferase activity" evidence=ISO;ISS;IDA

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0050512 "lactosylceramide 4-alpha-galactosyltransferase activity" evidence=IEA

UNIPROTKB|Q9N290 A4GALT "Lactosylceramide 4-alpha-galactosyltransferase" [Gorilla gorilla gorilla (taxid:9595)]

 Score = 112 (44.5 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
 Identities = 24/53 (45%), Positives = 37/53 (69%)

Query:     3 KGNVDPGLISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQT 55
             +G  +P L+ +  ++S   R+AL++KFGGIYLD + IVL+NL  L N +G Q+
Sbjct:   137 QGRWEPYLLPVLSDAS---RIALMWKFGGIYLDTDFIVLKNLRNLTNVLGTQS 186

GO:0008378 "galactosyltransferase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	135
pfam04572	135	pfam04572, Gb3_synth, Alpha 1,4-glycosyltransferas	3e-13
pfam04488	93	pfam04488, Gly_transf_sug, Glycosyltransferase sug	6e-09

>gnl|CDD|146960 pfam04572, Gb3_synth, Alpha 1,4-glycosyltransferase conserved region

 Score = 62.0 bits (151), Expect = 3e-13
 Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 9/67 (13%)

Query: 68  NVWGHNDLYLVSRVVVRVNGRTRF---------NFTVLPPSAFYPVDWRRVQSFFMRPRN 118
           N WGHN   LV+RV+ +      F          FTVLPP AFYP+ W + + FF  PR 
Sbjct: 24  NKWGHNGPGLVTRVLRKWCNTGDFAGMTRLRCGGFTVLPPDAFYPIPWPQWKKFFEEPRL 83

Query: 119 EQHSKLL 125
           E+    +
Sbjct: 84  EETMNWV 90

The glycosphingolipids (GSL) form part of eukaryotic cell membranes. They consist of a hydrophilic carbohydrate moiety linked to a hydrophobic ceramide tail embedded within the lipid bilayer of the membrane. Lactosylceramide, Gal1,4Glc1Cer (LacCer), is the common synthetic precursor to the majority of GSL found in vertebrates. Alpha 1.4-glycosyltransferases utilise UDP donors and transfer the sugar to a beta-linked acceptor. This region appears to be confined to higher eukaryotes. No function has been yet assigned to this region. Length = 135

>gnl|CDD|218109 pfam04488, Gly_transf_sug, Glycosyltransferase sugar-binding region containing DXD motif

 Score = 49.6 bits (119), Expect = 6e-09
 Identities = 25/46 (54%), Positives = 33/46 (71%), Gaps = 4/46 (8%)

Query: 10 LISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQT 55
          L+ L    S+LLR A+LYK+GGIYLD +VI L++L    N+IGAQ 
Sbjct: 49 LLPLFAAKSDLLRYAILYKYGGIYLDTDVIPLKSL----NSIGAQE 90

The DXD motif is a short conserved motif found in many families of glycosyltransferases, which add a range of different sugars to other sugars, phosphates and proteins. DXD-containing glycosyltransferases all use nucleoside diphosphate sugars as donors and require divalent cations, usually manganese. The DXD motif is expected to play a carbohydrate binding role in sugar-nucleoside diphosphate and manganese dependent glycosyltransferases. Length = 93

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	135
KOG1928	409	consensus Alpha-1,4-N-acetylglucosaminyltransferas	99.96
PF04488	103	Gly_transf_sug: Glycosyltransferase sugar-binding	99.47
PF04572	135	Gb3_synth: Alpha 1,4-glycosyltransferase conserved	99.41
PF05704	276	Caps_synth: Capsular polysaccharide synthesis prot	98.92
COG3774	347	OCH1 Mannosyltransferase OCH1 and related enzymes	98.82
PF12919	514	TcdA_TcdB: TcdA/TcdB catalytic glycosyltransferase	98.17
cd00505	246	Glyco_transf_8 Members of glycosyltransferase fami	87.11
cd04194	248	GT8_A4GalT_like A4GalT_like proteins catalyze the	86.74
PF01501	250	Glyco_transf_8: Glycosyl transferase family 8; Int	86.15
cd06430	304	GT8_like_2 GT8_like_2 represents a subfamily of GT	85.76
cd06429	257	GT8_like_1 GT8_like_1 represents a subfamily of GT	85.56
cd02537	240	GT8_Glycogenin Glycogenin belongs the GT 8 family	84.84
PLN00176	333	galactinol synthase	84.71
cd06431	280	GT8_LARGE_C LARGE catalytic domain has closest hom	83.67
PRK15171	334	lipopolysaccharide 1,3-galactosyltransferase; Prov	81.99
cd06432	248	GT8_HUGT1_C_like The C-terminal domain of HUGT1-li	81.75

>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]

Probab=99.96  E-value=6.4e-30  Score=211.11  Aligned_cols=134  Identities=47%  Similarity=0.817  Sum_probs=116.0

Q ss_pred             CCCCCCCCCCCCchhHHHHHHHHHHHHHcCCeEEeCCceeeecchhhhhhhhcccC-C---CCCcc-----------hhh
Q 048563            1 LKKGNVDPGLISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQTV-D---SETKN-----------HTR   65 (135)
Q Consensus         1 ~~~~~~~~~~~~~~~~~SD~iR~~~Lyk~GGiYlD~Dv~~lk~l~~l~~~~g~e~~-~---~~~G~-----------~~~   65 (135)
                      +|+|+++++++++.++.||+.|+++|||||||||||||++||++..++|.+|.... .   ..+|+           +.|
T Consensus       211 ~k~g~~~~~~~~l~~~lSdl~RLA~LyKYGGvYLDTDvIvLksl~~l~N~ig~~~~~~~~~~lnnavl~F~k~Hpfl~~c  290 (409)
T KOG1928|consen  211 WKDGRLDPGKIPLLQNLSDLSRLALLYKYGGVYLDTDVIVLKSLSNLRNVIGVDPATQAWTRLNNAVLIFDKNHPFLLEC  290 (409)
T ss_pred             HHhcccCCCcccchhhHHHHHHHHHHHHhCCEEeeccEEEecccccccccccccchhhHHHhhcCceeecCCCCHHHHHH
Confidence            58999999999999999999999999999999999999999999999999983322 1   22321           345


Q ss_pred             hc--------ccccccchHHHHHHHHHhhCcccCceEEeCCCCcCCCCccccccccccCchhhhhhhHHHHHHhhhc
Q 048563           66 LN--------NVWGHNDLYLVSRVVVRVNGRTRFNFTVLPPSAFYPVDWRRVQSFFMRPRNEQHSKLLHKKLELINK  134 (135)
Q Consensus        66 l~--------~~~~~~gP~lltrv~~~~~~~~~~~i~i~p~~~FyPi~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  134 (135)
                      ++        +.||++||.++|||++++|+....+.+|.|+..|||++|.+...||.-+..|-.+.|....+..+.|
T Consensus       291 l~eF~~tfNg~~WG~NGP~LvTRVakr~c~~~~~~~~i~~p~~f~~vn~~~i~~fy~iP~~ew~~~~~~~~~~~~~k  367 (409)
T KOG1928|consen  291 LREFALTYNGNIWGHNGPYLVTRVAKRWCNTKNYNLTILPPSAFYPVNWLEIQAFYAIPWTEWDRKFVDEETLKMLK  367 (409)
T ss_pred             HHHHHHhccccccccCCcHHHHHHHHHHhCCCCccceecCccccCceeeeccccccccchhHhhhhhhHHHHHHHhc
Confidence            54        3899999999999999999988777889999999999999999999988888888887877777665

>PF04488 Gly_transf_sug: Glycosyltransferase sugar-binding region containing DXD motif ; InterPro: IPR007577 This entry represents those sugar-binding regions of glycosyltransferases that contain a DXD motif

Probab=99.47  E-value=3.1e-14  Score=98.59  Aligned_cols=41  Identities=46%  Similarity=0.725  Sum_probs=36.0

Q ss_pred             CCCCCchhHHHHHHHHHHHHHcCCeEEeCCceeeecc-hhhh
Q 048563            8 PGLISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENL-SKLK   48 (135)
Q Consensus         8 ~~~~~~~~~~SD~iR~~~Lyk~GGiYlD~Dv~~lk~l-~~l~   48 (135)
                      .......+|+||++|+++||+|||||+|+|++|+||+ +.+.
T Consensus        56 ~~~~~~~~~~sD~~R~~~L~~~GGiY~D~D~~~~rpl~~~~~   97 (103)
T PF04488_consen   56 PGRYPNYAHKSDLLRYLVLYKYGGIYLDLDVICLRPLDDPWL   97 (103)
T ss_pred             cccccchHHHHHHHHHHHHHHcCcEEEeCccccCcchhhhhh
Confidence            3455567899999999999999999999999999999 7653

The DXD motif is a short conserved motif found in many families of glycosyltransferases, which add a range of different sugars to other sugars, phosphates and proteins. DXD-containing glycosyltransferases all use nucleoside diphosphate sugars as donors and require divalent cations, usually manganese. The DXD motif is expected to play a carbohydrate binding role in sugar-nucleoside diphosphate and manganese dependent glycosyltransferases [].

>PF04572 Gb3_synth: Alpha 1,4-glycosyltransferase conserved region; InterPro: IPR007652 The glycosphingolipids (GSL) form part of eukaryotic cell membranes

Probab=99.41  E-value=1.4e-13  Score=100.23  Aligned_cols=61  Identities=36%  Similarity=0.703  Sum_probs=55.4

Q ss_pred             ccccccchHHHHHHHHHhhCc---------ccCceEEeCCCCcCCCCccccccccccCchhhhhhhHHHH
Q 048563           68 NVWGHNDLYLVSRVVVRVNGR---------TRFNFTVLPPSAFYPVDWRRVQSFFMRPRNEQHSKLLHKK  128 (135)
Q Consensus        68 ~~~~~~gP~lltrv~~~~~~~---------~~~~i~i~p~~~FyPi~~~~~~~~f~~~~~~~~~~~~~~~  128 (135)
                      +.|+.+||.++|||++++|+.         .|.+++|+|+++||||+|.+|+.+|++...++..+|+.+.
T Consensus        24 ~~w~~nGP~lltRVl~~~C~~~~~~~~~~~~C~~~~vlp~~~FYPI~~~~~~~~F~~~~~~~~~~~~~~S   93 (135)
T PF04572_consen   24 NKWGHNGPDLLTRVLKKFCNTENFKDMEDNRCRGFSVLPPEAFYPIPYQDWKRFFEPPSTEEVMEWLKNS   93 (135)
T ss_pred             chhcccCcHHHHHHHHHHhcCCCccccccccCCCeEEcCccceeccChhHhHHHhcCCcchHHHHHhhCc
Confidence            489999999999999999975         3678999999999999999999999999999988887643

They consist of a hydrophilic carbohydrate moiety linked to a hydrophobic ceramide tail embedded within the lipid bilayer of the membrane. Lactosylceramide, Gal1,4Glc1Cer (LacCer), is the common synthetic precursor to the majority of GSL found in vertebrates. Alpha 1.4-glycosyltransferases utilise UDP donors and transfer the sugar to a beta-linked acceptor []. No function has been yet assigned to this domain ; GO: 0008378 galactosyltransferase activity, 0005795 Golgi stack

>PF05704 Caps_synth: Capsular polysaccharide synthesis protein; InterPro: IPR008441 This entry consists of several capsular polysaccharide proteins

Probab=98.92  E-value=6.9e-10  Score=89.49  Aligned_cols=36  Identities=39%  Similarity=0.678  Sum_probs=33.4

Q ss_pred             chhHHHHHHHHHHHHHcCCeEEeCCceeeecchhhh
Q 048563           13 LGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLK   48 (135)
Q Consensus        13 ~~~~~SD~iR~~~Lyk~GGiYlD~Dv~~lk~l~~l~   48 (135)
                      ..+|+||++|+.+|++|||+|+|++|.|.+++++..
T Consensus       107 ~~a~~SDilR~~LL~~yGGvWiDatv~~t~~l~~~~  142 (276)
T PF05704_consen  107 SPAHFSDILRLALLYKYGGVWIDATVYLTKPLDDEI  142 (276)
T ss_pred             chhHHHHHHHHHHHHHcCcEEeCCceEECCchhHHH
Confidence            358999999999999999999999999999998863

Capsular polysaccharide (CPS) is a major virulence factor in Streptococcus pneumoniae. This family is often transcribed with putative glycosyl transferases to give rise to bifunctional proteins [].

>COG3774 OCH1 Mannosyltransferase OCH1 and related enzymes [Cell envelope biogenesis, outer membrane]

Probab=98.82  E-value=2.6e-09  Score=88.63  Aligned_cols=73  Identities=19%  Similarity=0.312  Sum_probs=54.6

Q ss_pred             hhHHHHHHHHHHHHHcCCeEEeCCceeeecchhhh----hhhhcccCCCC--------Ccc--hh----hhc--------
Q 048563           14 GQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLK----NTIGAQTVDSE--------TKN--HT----RLN--------   67 (135)
Q Consensus        14 ~~~~SD~iR~~~Lyk~GGiYlD~Dv~~lk~l~~l~----~~~g~e~~~~~--------~G~--~~----~l~--------   67 (135)
                      .+-.+|++||.+|++|||||+|+|..|+|+++++.    .++..+.....        +|+  +.    ++.        
T Consensus       144 ~~~raD~~RYfvL~~~GGIY~DiD~~~~~~id~~l~~~~~~l~~~~~~~v~n~~m~s~p~hp~~~~~i~~~~~~~~~~~p  223 (347)
T COG3774         144 GALRADFWRYFVLYHYGGIYLDIDTGLVKPIDPLLDDAEAWLRRTIPLGVGNGVMGSAPGHPFLKKMIERLPYNIIWKFP  223 (347)
T ss_pred             chhhhhhHhheeeeccCcEEEeCCcccccCCcccccchHHHhhhcCCCcccchhhccCCCCchHHHHHHHhhhccccCCC
Confidence            35689999999999999999999999999999975    35555443322        233  11    111        


Q ss_pred             --ccccccchHHHHHHHHHhh
Q 048563           68 --NVWGHNDLYLVSRVVVRVN   86 (135)
Q Consensus        68 --~~~~~~gP~lltrv~~~~~   86 (135)
                        ..+..+||.+++.+.+++.
T Consensus       224 ~~ti~~stGp~iL~~i~~~~~  244 (347)
T COG3774         224 YWTIQASTGPLILSEIHSAYT  244 (347)
T ss_pred             ceeeecCCCChhHHHHHHHhh
Confidence              2567899999999999864

>PF12919 TcdA_TcdB: TcdA/TcdB catalytic glycosyltransferase domain; InterPro: IPR024770 Toxins A (TcdA) and B (TcdB) of Clostridium difficile belong to the family of clostridial glucosylating toxins

Probab=98.17  E-value=1.2e-06  Score=76.13  Aligned_cols=28  Identities=39%  Similarity=0.702  Sum_probs=22.9

Q ss_pred             chhHHHHHHHHHHHHHcCCeEEeCCcee
Q 048563           13 LGQNSSNLLRLALLYKFGGIYLDPNVIV   40 (135)
Q Consensus        13 ~~~~~SD~iR~~~Lyk~GGiYlD~Dv~~   40 (135)
                      ..|-.||.+|+.+|+++||||+|+|+.+
T Consensus       205 N~AAASDilRl~iL~~~GGIY~D~D~LP  232 (514)
T PF12919_consen  205 NYAAASDILRLYILKEYGGIYLDVDMLP  232 (514)
T ss_dssp             -HHHHHHHHHHHHHHHH-EEEE-TT-EE
T ss_pred             ChhhHHHHHHHHHHHHhCCEEEecccCC
Confidence            4688999999999999999999999887

These toxins glucosylate small GTPases of Rho and Ras families, inhibiting the signalling and regulatory functions of these switch proteins. After receptor-binding, the toxins are endocytosed to reach acidic endosomal compartments from where the toxins are translocated into the cytosol []. TcdB has been shown to consist of a N-terminal glucosyltransferase domain (GTD), responsible for the biological effects of the toxin, a cysteine protease domain (CPD), responsible for autocatalytic cleavage, a hydrophobic region (HR), which has been suggested to be involved in toxin translocation, and a C-terminal repetitive domain involved in receptor binding. The pore-forming region of toxin B has been described to be in a region in the middle of the protein, within amino acid residues 830 and 990 []. This entry represents the N-terminal glucosyltransferase domain from TcdA and TcdB. It is also found in other toxins. The GTD of TcdB has been shown to glycosylate the host's RhoA protein [].; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 2BVL_A 2BVM_A 2VKH_C 2VL8_A 2VKD_A 3SS1_A 3SRZ_A 2VK9_A.

>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis

Probab=87.11  E-value=0.33  Score=37.77  Aligned_cols=29  Identities=28%  Similarity=0.470  Sum_probs=22.0

Q ss_pred             HHHHHHHHHcC----CeEEeCCceeeecchhhh
Q 048563           20 LLRLALLYKFG----GIYLDPNVIVLENLSKLK   48 (135)
Q Consensus        20 ~iR~~~Lyk~G----GiYlD~Dv~~lk~l~~l~   48 (135)
                      +.|+.+-.-..    =+|||+|+++++++++|.
T Consensus        84 y~RL~i~~llp~~~kvlYLD~D~iv~~di~~L~  116 (246)
T cd00505          84 LTKLHLPNLVPDYDKILYVDADILVLTDIDELW  116 (246)
T ss_pred             eHHHHHHHHhhccCeEEEEcCCeeeccCHHHHh
Confidence            57776633222    279999999999999985

Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.

>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface

Probab=86.74  E-value=0.4  Score=37.13  Aligned_cols=32  Identities=34%  Similarity=0.477  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHcC----CeEEeCCceeeecchhhh
Q 048563           17 SSNLLRLALLYKFG----GIYLDPNVIVLENLSKLK   48 (135)
Q Consensus        17 ~SD~iR~~~Lyk~G----GiYlD~Dv~~lk~l~~l~   48 (135)
                      .+=+.|+.+-.-..    =+|||+|+++++++++|.
T Consensus        81 ~~~y~rl~l~~ll~~~~rvlylD~D~lv~~di~~L~  116 (248)
T cd04194          81 YATYYRLLIPDLLPDYDKVLYLDADIIVLGDLSELF  116 (248)
T ss_pred             HHHHHHHHHHHHhcccCEEEEEeCCEEecCCHHHHh
Confidence            35677888877666    479999999999999985

The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys

>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=86.15  E-value=0.44  Score=35.90  Aligned_cols=17  Identities=41%  Similarity=0.780  Sum_probs=13.9

Q ss_pred             eEEeCCceeeecchhhh
Q 048563           32 IYLDPNVIVLENLSKLK   48 (135)
Q Consensus        32 iYlD~Dv~~lk~l~~l~   48 (135)
                      +|||+|++++++++.|.
T Consensus       103 lyLD~D~lv~~dl~~lf  119 (250)
T PF01501_consen  103 LYLDADTLVLGDLDELF  119 (250)
T ss_dssp             EEE-TTEEESS-SHHHH
T ss_pred             EEEcCCeeeecChhhhh
Confidence            79999999999999984

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....

>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function

Probab=85.76  E-value=0.42  Score=39.38  Aligned_cols=30  Identities=23%  Similarity=0.366  Sum_probs=22.3

Q ss_pred             HHHHHH---HHH-cCCeEEeCCceeeecchhhhh
Q 048563           20 LLRLAL---LYK-FGGIYLDPNVIVLENLSKLKN   49 (135)
Q Consensus        20 ~iR~~~---Lyk-~GGiYlD~Dv~~lk~l~~l~~   49 (135)
                      |.|+.+   |-. -==+|||+|++|+.|+++|.+
T Consensus        85 y~RL~ip~lLp~~dkvLYLD~Dii~~~dI~eL~~  118 (304)
T cd06430          85 AQRLFLPSLLPDVDSLLYVDTDILFLRPVEEIWS  118 (304)
T ss_pred             HHHHHHHHHhhhhceEEEeccceeecCCHHHHHH
Confidence            677654   222 245899999999999999854

A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.

>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function

Probab=85.56  E-value=0.53  Score=37.68  Aligned_cols=32  Identities=38%  Similarity=0.473  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHc----CCeEEeCCceeeecchhhh
Q 048563           17 SSNLLRLALLYKF----GGIYLDPNVIVLENLSKLK   48 (135)
Q Consensus        17 ~SD~iR~~~Lyk~----GGiYlD~Dv~~lk~l~~l~   48 (135)
                      .+=+.|+.+=--.    ==+|||+|++|.+++++|.
T Consensus        99 ~~~y~Rl~ip~llp~~~kvlYLD~Dviv~~dl~eL~  134 (257)
T cd06429          99 LLNFARFYLPELFPKLEKVIYLDDDVVVQKDLTELW  134 (257)
T ss_pred             HHHHHHHHHHHHhhhhCeEEEEeCCEEEeCCHHHHh
Confidence            4568888772222    2389999999999999985

A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.

>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen

Probab=84.84  E-value=0.56  Score=36.64  Aligned_cols=28  Identities=29%  Similarity=0.572  Sum_probs=21.1

Q ss_pred             HHHHHHHHHcCC----eEEeCCceeeecchhhh
Q 048563           20 LLRLALLYKFGG----IYLDPNVIVLENLSKLK   48 (135)
Q Consensus        20 ~iR~~~Lyk~GG----iYlD~Dv~~lk~l~~l~   48 (135)
                      +.|+.+. +...    +|||+|+++++++++|.
T Consensus        79 ~~kl~~~-~l~~~drvlylD~D~~v~~~i~~Lf  110 (240)
T cd02537          79 YTKLRLW-NLTEYDKVVFLDADTLVLRNIDELF  110 (240)
T ss_pred             hHHHHhc-cccccceEEEEeCCeeEccCHHHHh
Confidence            4565554 3334    69999999999999985

Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.

>PLN00176 galactinol synthase

Probab=84.71  E-value=0.56  Score=39.10  Aligned_cols=28  Identities=36%  Similarity=0.565  Sum_probs=21.4

Q ss_pred             HHHHHHHHc-CCeEEeCCceeeecchhhh
Q 048563           21 LRLALLYKF-GGIYLDPNVIVLENLSKLK   48 (135)
Q Consensus        21 iR~~~Lyk~-GGiYlD~Dv~~lk~l~~l~   48 (135)
                      +|+.-|-+| ==+|||+|++|++++|+|.
T Consensus       105 l~iw~l~~ydkvlyLDaD~lv~~nid~Lf  133 (333)
T PLN00176        105 LRIWEFVEYSKMIYLDGDIQVFENIDHLF  133 (333)
T ss_pred             hhhccccccceEEEecCCEEeecChHHHh
Confidence            444444555 4589999999999999985

>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis

Probab=83.67  E-value=0.64  Score=37.59  Aligned_cols=34  Identities=21%  Similarity=0.343  Sum_probs=25.1

Q ss_pred             HHHHH---HHHHHHHHcC-----CeEEeCCceeeecchhhhh
Q 048563           16 NSSNL---LRLALLYKFG-----GIYLDPNVIVLENLSKLKN   49 (135)
Q Consensus        16 ~~SD~---iR~~~Lyk~G-----GiYlD~Dv~~lk~l~~l~~   49 (135)
                      |.|-+   .|+.+---..     =+|||+|++|..++++|.+
T Consensus        78 ~~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~di~eL~~  119 (280)
T cd06431          78 HYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATDIAELWK  119 (280)
T ss_pred             chhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCCHHHHHH
Confidence            44555   6887644333     3899999999999999853

The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil

>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional

Probab=81.99  E-value=0.82  Score=37.81  Aligned_cols=32  Identities=19%  Similarity=0.330  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHcC-----CeEEeCCceeeecchhhh
Q 048563           17 SSNLLRLALLYKFG-----GIYLDPNVIVLENLSKLK   48 (135)
Q Consensus        17 ~SD~iR~~~Lyk~G-----GiYlD~Dv~~lk~l~~l~   48 (135)
                      .+=|.|+.+---.-     =+|||+|++|..+|++|.
T Consensus       105 ~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~dl~~L~  141 (334)
T PRK15171        105 YATYFRFIIADYFIDKTDKVLYLDADIACKGSIKELI  141 (334)
T ss_pred             HHHHHHHHHHHhhhhhcCEEEEeeCCEEecCCHHHHH
Confidence            55677875433332     379999999999999984

>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family

Probab=81.75  E-value=0.83  Score=36.18  Aligned_cols=18  Identities=33%  Similarity=0.529  Sum_probs=16.4

Q ss_pred             CeEEeCCceeeecchhhh
Q 048563           31 GIYLDPNVIVLENLSKLK   48 (135)
Q Consensus        31 GiYlD~Dv~~lk~l~~l~   48 (135)
                      =+|||+|++|..+|++|.
T Consensus        99 vLYLD~Dilv~~dL~eL~  116 (248)
T cd06432          99 VIFVDADQIVRTDLKELM  116 (248)
T ss_pred             EEEEcCCceecccHHHHH
Confidence            379999999999999984

C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	135
2vk9_A	551	Alpha-toxin; glycosyltransferase; 2.85A {Clostridi	97.97
2bvl_A	543	Toxin B; glycosyltransferase; HET: GLC UDP TBR; 2.	97.96
4dmv_A	556	Toxin A, TCDA; transferase; 1.50A {Clostridium dif	97.75
1g9r_A	311	Glycosyl transferase; alpha-beta structure; HET: U	86.98
1ll2_A	333	Glycogenin-1; protein-substrate complex, beta-alph	85.05
3tzt_A	276	Glycosyl transferase family 8; structural genomics	83.96
3u2u_A	263	Glycogenin-1, GN-1, GN1; structural genomics, stru	82.47

>2vk9_A Alpha-toxin; glycosyltransferase; 2.85A {Clostridium novyi} SCOP: c.68.1.22

Probab=97.97  E-value=3.4e-06  Score=72.35  Aligned_cols=28  Identities=36%  Similarity=0.694  Sum_probs=26.1

Q ss_pred             CchhHHHHHHHHHHHHHcCCeEEeCCce
Q 048563           12 SLGQNSSNLLRLALLYKFGGIYLDPNVI   39 (135)
Q Consensus        12 ~~~~~~SD~iR~~~Lyk~GGiYlD~Dv~   39 (135)
                      ...|..||.+|+.+|+++||||+|+|++
T Consensus       261 ~N~aaASDilR~~il~~~GGiY~D~D~l  288 (551)
T 2vk9_A          261 NNLAAASDILRIAILKKYGGVYCDLDFL  288 (551)
T ss_dssp             CCHHHHHHHHHHHHHHHHCEEEECTTCB
T ss_pred             cchHHHHHHHHHHHHHHhCCEEEecccc
Confidence            3568899999999999999999999998

>2bvl_A Toxin B; glycosyltransferase; HET: GLC UDP TBR; 2.2A {Clostridium difficile} SCOP: c.68.1.22 PDB: 2bvm_A* 2vkh_A* 2vkd_A* 2vl8_A*

Probab=97.96  E-value=3.9e-06  Score=71.87  Aligned_cols=29  Identities=31%  Similarity=0.537  Sum_probs=27.0

Q ss_pred             chhHHHHHHHHHHHHHcCCeEEeCCceee
Q 048563           13 LGQNSSNLLRLALLYKFGGIYLDPNVIVL   41 (135)
Q Consensus        13 ~~~~~SD~iR~~~Lyk~GGiYlD~Dv~~l   41 (135)
                      ..+..||.+|+.+|+++||||+|+|+++-
T Consensus       264 N~aaASDilR~~iL~~~GGiY~D~D~lP~  292 (543)
T 2bvl_A          264 NLAAASDILRISALKEIGGMYLDVDMLPG  292 (543)
T ss_dssp             CHHHHHHHHHHHHHHHHCEEEECTTCEEC
T ss_pred             ChhhHHHHHHHHHHHHhCCeEeecccccc
Confidence            56889999999999999999999999875

>4dmv_A Toxin A, TCDA; transferase; 1.50A {Clostridium difficile} PDB: 4dmw_A* 3ss1_A 3srz_A

Probab=97.75  E-value=1.2e-05  Score=68.63  Aligned_cols=34  Identities=29%  Similarity=0.424  Sum_probs=28.8

Q ss_pred             CCCchhHHHHHHHHHHHHHcCCeEEeCCceeeec
Q 048563           10 LISLGQNSSNLLRLALLYKFGGIYLDPNVIVLEN   43 (135)
Q Consensus        10 ~~~~~~~~SD~iR~~~Lyk~GGiYlD~Dv~~lk~   43 (135)
                      .....+-.||.+|+.+|+++||||+|+|+.+--+
T Consensus       275 lR~N~aaAsD~~r~~iL~~~GGiY~d~D~lP~~~  308 (556)
T 4dmv_A          275 NRGNLAAASDIVRLLALKNFGGVYLDVDMLPGIH  308 (556)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHCEEEECTTCBCCBC
T ss_pred             HccChHhHHHHHHHHHHHHhCCeeeecccccccc
Confidence            3445688999999999999999999999986543

>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*

Probab=86.98  E-value=0.25  Score=38.69  Aligned_cols=30  Identities=33%  Similarity=0.438  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHcCC----eEEeCCceeeecchhhh
Q 048563           19 NLLRLALLYKFGG----IYLDPNVIVLENLSKLK   48 (135)
Q Consensus        19 D~iR~~~Lyk~GG----iYlD~Dv~~lk~l~~l~   48 (135)
                      =+.|+.+-.-...    +|||+|++|++++++|.
T Consensus        83 ~y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~  116 (311)
T 1g9r_A           83 TYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLW  116 (311)
T ss_dssp             GGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHH
T ss_pred             HHHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHh
Confidence            3456655433444    99999999999999985

>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*

Probab=85.05  E-value=0.34  Score=38.68  Aligned_cols=30  Identities=23%  Similarity=0.474  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHcCC----eEEeCCceeeecchhhh
Q 048563           18 SNLLRLALLYKFGG----IYLDPNVIVLENLSKLK   48 (135)
Q Consensus        18 SD~iR~~~Lyk~GG----iYlD~Dv~~lk~l~~l~   48 (135)
                      .=+.|+.+. ....    +|||+|++|++++++|.
T Consensus        82 ~t~~Kl~i~-~l~~ydrvlYLDaD~lv~~di~eLf  115 (333)
T 1ll2_A           82 VTLTKLHCW-SLTQYSKCVFMDADTLVLANIDDLF  115 (333)
T ss_dssp             HHHHHGGGG-GCTTCSEEEEECTTEEECSCCGGGG
T ss_pred             HHHHHHHHh-HhcCCCeEEEEeCCEEeccCHHHHh
Confidence            346676654 3444    89999999999999985

>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0

Probab=83.96  E-value=0.42  Score=36.94  Aligned_cols=32  Identities=28%  Similarity=0.381  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHcC-----CeEEeCCceeeecchhhh
Q 048563           17 SSNLLRLALLYKFG-----GIYLDPNVIVLENLSKLK   48 (135)
Q Consensus        17 ~SD~iR~~~Lyk~G-----GiYlD~Dv~~lk~l~~l~   48 (135)
                      .+-+.|+.+=.-..     =+|||+|++|++++++|.
T Consensus        85 ~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~  121 (276)
T 3tzt_A           85 KEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLL  121 (276)
T ss_dssp             HHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHH
T ss_pred             HHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHh
Confidence            35678887664443     389999999999999984

>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A

Probab=82.47  E-value=0.51  Score=36.61  Aligned_cols=18  Identities=28%  Similarity=0.643  Sum_probs=16.5

Q ss_pred             CeEEeCCceeeecchhhh
Q 048563           31 GIYLDPNVIVLENLSKLK   48 (135)
Q Consensus        31 GiYlD~Dv~~lk~l~~l~   48 (135)
                      =+|||+|++|++++++|.
T Consensus        99 vlylD~D~~v~~~~~~Lf  116 (263)
T 3u2u_A           99 CVFMDADTLVLANIDDLF  116 (263)
T ss_dssp             EEEECTTEEECSCCGGGG
T ss_pred             EEEEcCCEeeccCHHHHh
Confidence            489999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	135
d2bvla1	542	Toxin B {Clostridium difficile [TaxId: 1496]}	98.12
d2vk9a1	540	Alpha-toxin {Clostridium novyi [TaxId: 1542]}	97.97
d1ga8a_	282	Galactosyltransferase LgtC {Neisseria meningitidis	90.69
d1ll2a_	263	Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId:	89.87

>d2bvla1 c.68.1.22 (A:1-542) Toxin B {Clostridium difficile [TaxId: 1496]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Glycosylating toxin catalytic domain-like
domain: Toxin B
species: Clostridium difficile [TaxId: 1496]

Probab=98.12  E-value=6.4e-07  Score=74.91  Aligned_cols=29  Identities=31%  Similarity=0.550  Sum_probs=26.7

Q ss_pred             CchhHHHHHHHHHHHHHcCCeEEeCCcee
Q 048563           12 SLGQNSSNLLRLALLYKFGGIYLDPNVIV   40 (135)
Q Consensus        12 ~~~~~~SD~iR~~~Lyk~GGiYlD~Dv~~   40 (135)
                      ...|-.||.+|+.+|++|||||+|+|+++
T Consensus       263 ~NyAAASDilRm~iLke~GGIYtD~D~lP  291 (542)
T d2bvla1         263 WNLAAASDILRISALKEIGGMYLDVDMLP  291 (542)
T ss_dssp             CCHHHHHHHHHHHHHHHHCEEEECTTCEE
T ss_pred             cchHhHHHHHHHHHHHHcCCeeeeccccc
Confidence            35678999999999999999999999987

>d2vk9a1 c.68.1.22 (A:2-541) Alpha-toxin {Clostridium novyi [TaxId: 1542]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Glycosylating toxin catalytic domain-like
domain: Alpha-toxin
species: Clostridium novyi [TaxId: 1542]

Probab=97.97  E-value=1.4e-06  Score=72.59  Aligned_cols=31  Identities=32%  Similarity=0.540  Sum_probs=27.4

Q ss_pred             CchhHHHHHHHHHHHHHcCCeEEeCCceeee
Q 048563           12 SLGQNSSNLLRLALLYKFGGIYLDPNVIVLE   42 (135)
Q Consensus        12 ~~~~~~SD~iR~~~Lyk~GGiYlD~Dv~~lk   42 (135)
                      ...|-.||.+|+.+|++|||||.|+|+++-=
T Consensus       260 wNyAAASDilRm~iLke~GGIYtD~D~LP~y  290 (540)
T d2vk9a1         260 NNLAAASDILRIAILKKYGGVYCDLDFLPGV  290 (540)
T ss_dssp             CCHHHHHHHHHHHHHHHHCEEEECTTCBSCB
T ss_pred             cchhhHHHHHHHHHHHHcCCeeecccccccc
Confidence            3457899999999999999999999998843

>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

Probab=90.69  E-value=0.045  Score=40.00  Aligned_cols=18  Identities=39%  Similarity=0.593  Sum_probs=16.4

Q ss_pred             CeEEeCCceeeecchhhh
Q 048563           31 GIYLDPNVIVLENLSKLK   48 (135)
Q Consensus        31 GiYlD~Dv~~lk~l~~l~   48 (135)
                      -||||+|++|++++++|.
T Consensus        99 iiyLD~D~iv~~dl~~L~  116 (282)
T d1ga8a_          99 VLYLDIDVLVRDSLTPLW  116 (282)
T ss_dssp             EEEECSSEEECSCCHHHH
T ss_pred             EEEecCCEEEecchHHHH
Confidence            489999999999999984

>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Glycogenin
domain: Glycogenin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=89.87  E-value=0.057  Score=39.02  Aligned_cols=31  Identities=23%  Similarity=0.463  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHcCC----eEEeCCceeeecchhhh
Q 048563           17 SSNLLRLALLYKFGG----IYLDPNVIVLENLSKLK   48 (135)
Q Consensus        17 ~SD~iR~~~Lyk~GG----iYlD~Dv~~lk~l~~l~   48 (135)
                      .+-+.|+.+. ....    +|||+|+++++++++|.
T Consensus        81 ~~ty~Kl~i~-~l~~ydkvlYLDaD~lv~~~id~Lf  115 (263)
T d1ll2a_          81 GVTLTKLHCW-SLTQYSKCVFMDADTLVLANIDDLF  115 (263)
T ss_dssp             HHHHHHGGGG-GCTTCSEEEEECTTEEECSCCGGGG
T ss_pred             hhhhHHHHHh-hhcccceEEEeCCCEEEecCHHHHh
Confidence            3457787764 4566    99999999999999985