Citrus Sinensis ID: 048564

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110----
Protein Sequence
MAARLFGGYRTMMAAAAKSGAEATAAAGKKAKGGIGKPVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFVKSA
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHccccHHHcccccccccccccccccHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccEEccHHHHHHcccccEEcHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHcccccccccccccccccccccccccccHHHHHHHccccccHHHHHHHHHHHHHHccccccccccEEEccHHHHHHHcccccccHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MAARLFGGYRTMMAAAAKSGAEATAAAGkkakggigkpvpvsAQLSKFlganeasrSDAVKKIWQYIRQhdlqnpankreircddklktifngkdsVGFLEIAKLLSQHFVKSA
Flexible Loop (DISEMBL)
MAARLFGGYRTMMAAAAKSGAEATAAAGKkakggigkpvPVSAQLSKFLGANEASRSDAVKKIWQYIrqhdlqnpankreircDDKLKTIFNGKDSVGFLEIAKLLsqhfvksa
Low Complexity Region (SEG)
MAARLFGGYRTMMaaaaksgaeataaagkkakggigkPVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFVKSA
Disordered region (IsUnstruct)
**********************************************************AVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHF****
Disordered Region (DISOPRED)
***************************************PVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFV***
Disordered Region (DISEMBL)
MAARLFGGYRTMMAA********************GKPVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFVKSA
Disordered Region (DISPRO)
***********************************GKPVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFV***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAARLFGGYRTMMAAAAKSGAEATAAAGKKAKGGIGKPVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFVKSA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	114	2.2.26 [Sep-21-2011]
Q05024	226	Protein TRI1 OS=Saccharom	yes	no	0.614	0.309	0.527	2e-15
O74503	233	Upstream activation facto	yes	no	0.710	0.347	0.426	1e-14
Q08747	228	Upstream activation facto	no	no	0.815	0.407	0.376	6e-14
Q9P7S3	425	SWI/SNF and RSC complexes	no	no	0.587	0.157	0.367	2e-06
Q61466	515	SWI/SNF-related matrix-as	yes	no	0.543	0.120	0.333	0.0001
Q2TBN1	515	SWI/SNF-related matrix-as	yes	no	0.543	0.120	0.333	0.0001
Q96GM5	515	SWI/SNF-related matrix-as	yes	no	0.543	0.120	0.333	0.0001
Q9SIV5	1773	Zinc finger CCCH domain-c	no	no	0.403	0.025	0.404	0.0002
Q9FMT4	534	SWI/SNF complex component	no	no	0.605	0.129	0.285	0.0002
Q91FL8	312	Putative SWIB domain-cont	N/A	no	0.5	0.182	0.383	0.0003

>sp|Q05024|TRI1_YEAST Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRI1 PE=1 SV=1

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 51/72 (70%), Gaps = 2/72 (2%)

Query: 39  VPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVG 98
           V +SA L KFLG+ E  R+  VK IWQYI++HDLQNP ++REI CD+K++ IF GK    
Sbjct: 124 VLLSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIF-GKKMTM 182

Query: 99  FLEIAKLLSQHF 110
           F  + KLL++H 
Sbjct: 183 F-SMNKLLTKHL 193

May be involved in transcription regulation.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O74503|UAF30_SCHPO Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 53/82 (64%), Gaps = 1/82 (1%)

Query: 31  AKGGIGKPVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTI 90
           A   + KP+ +S +L++FLG  + SR   VKK+W+YI+ HDLQ+P +KR I CDDKLK++
Sbjct: 113 ANNPLNKPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSV 172

Query: 91  FNGKDSVGFLEIAKLLSQHFVK 112
           F   D++    + K L+    K
Sbjct: 173 FEV-DTLHMFTMNKYLTNLMTK 193

Component of the UAF (upstream activation factor) complex which interacts with the upstream element of the RNA polymerase I promoter and forms a stable preinitiation complex. UAF seems to stimulate basal transcription to a fully activated level.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q08747|UAF30_YEAST Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UAF30 PE=1 SV=1

 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 60/101 (59%), Gaps = 8/101 (7%)

Query: 18  KSGAEATAAAGKKAKGGIGKP------VPVSAQLSKFLGANEASRSDAVKKIWQYIRQHD 71
           K+ +E      +K KG + K       V +S  L+  LG +E +R++ V+++W YI+ H+
Sbjct: 97  KNDSETKGTHVEKKKGTVSKSPISTRKVTLSKSLASLLGEHELTRTEVVRRLWAYIKAHN 156

Query: 72  LQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFVK 112
           LQNP NK+EI CD+KL+ I  GK S    E+ K+L+ H  +
Sbjct: 157 LQNPNNKKEILCDEKLELIL-GK-STNMFEMHKILASHMTE 195

Nonessential component of the UAF (upstream activation factor) complex which interacts with the upstream element of the RNA polymerase I promoter and forms a stable preinitiation complex. Together with SPT15/TBP UAF seems to stimulate basal transcription to a fully activated level. UAF30 seems to play a role in silencing transcription by RNA polymerase II.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9P7S3|SSR3_SCHPO SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ssr3 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 41  VSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFL 100
           +S   +  LG  E +R D V  +WQYI+ H LQ+   KR I CD  L+ +F   D + F 
Sbjct: 208 LSKAFANILGIREGTRPDIVSYLWQYIKFHRLQDMEEKRLINCDKALRDLFEA-DRLYFP 266

Query: 101 EIAKLLSQ 108
            I +L+++
Sbjct: 267 RIPELMNR 274

Component of the chromatin structure remodeling complex (RSC), which is involved in transcription regulation and nucleosome positioning. Controls particularly membrane and organelle development genes. Part of the SWI/SNF complex, an ATP-dependent chromatin remodeling complex, required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q61466|SMRD1_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Mus musculus GN=Smarcd1 PE=1 SV=3

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 44  QLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIA 103
           +L++ LG +  +R   ++ +WQYI+ H LQ+P  +  + CD  L+ IF  +  + F EI 
Sbjct: 300 RLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQ-RMKFSEIP 358

Query: 104 KLL 106
           + L
Sbjct: 359 QRL 361

Involved in chromatin remodeling. Has a strong influence on the Vitamin D-mediated transcriptional activity from an enhancer Vitamin D receptor element (VDRE). May be a link between mammalian SWI-SNF-like chromatin remodeling complexes and the vitamin D receptor (VDR) heterodimer. Mediates critical interactions between nuclear receptors and the BRG1/SMARCA4 chromatin-remodeling complex for transactivation. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene (By similarity). Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth.

Mus musculus (taxid: 10090)

>sp|Q2TBN1|SMRD1_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Bos taurus GN=SMARCD1 PE=2 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 44  QLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIA 103
           +L++ LG +  +R   ++ +WQYI+ H LQ+P  +  + CD  L+ IF  +  + F EI 
Sbjct: 300 RLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQ-RMKFSEIP 358

Query: 104 KLL 106
           + L
Sbjct: 359 QRL 361

Involved in chromatin remodeling. Has a strong influence on the Vitamin D-mediated transcriptional activity from an enhancer Vitamin D receptor element (VDRE). May be a link between mammalian SWI-SNF-like chromatin remodeling complexes and the vitamin D receptor (VDR) heterodimer. Mediates critical interactions between nuclear receptors and the BRG1/SMARCA4 chromatin-remodeling complex for transactivation. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth.

Bos taurus (taxid: 9913)

>sp|Q96GM5|SMRD1_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Homo sapiens GN=SMARCD1 PE=1 SV=2

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 44  QLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIA 103
           +L++ LG +  +R   ++ +WQYI+ H LQ+P  +  + CD  L+ IF  +  + F EI 
Sbjct: 300 RLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQ-RMKFSEIP 358

Query: 104 KLL 106
           + L
Sbjct: 359 QRL 361

Involved in chromatin remodeling. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth (By similarity). Has a strong influence on the Vitamin D-mediated transcriptional activity from an enhancer Vitamin D receptor element (VDRE). May be a link between mammalian SWI-SNF-like chromatin remodeling complexes and the vitamin D receptor (VDR) heterodimer. Mediates critical interactions between nuclear receptors and the BRG1/SMARCA4 chromatin-remodeling complex for transactivation. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene.

Homo sapiens (taxid: 9606)

>sp|Q9SIV5|C3H19_ARATH Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis thaliana GN=NERD PE=1 SV=3

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 66  YIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFVK 112
           YI++++L++P  K ++ CD +L+ +F GK  VG  E+  LL  HF+K
Sbjct: 839 YIKRYNLRDPRRKSQVICDSRLQNLF-GKSHVGHFEMLNLLDSHFLK 884

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMT4|SNF12_ARATH SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana GN=At5g14170 PE=1 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 41  VSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFL 100
           +S  L   LG    +R   +  IW Y++   LQNP +     CD  L+ +F G++ + F 
Sbjct: 321 LSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVF-GEEKLKFT 379

Query: 101 EIAKLLSQHF 110
            +++ +S H 
Sbjct: 380 MVSQKISHHL 389

Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology).

Arabidopsis thaliana (taxid: 3702)

>sp|Q91FL8|VF306_IIV6 Putative SWIB domain-containing protein 306R OS=Invertebrate iridescent virus 6 GN=IIV6-306R PE=3 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 3/60 (5%)

Query: 31  AKGGIGKPVPVSAQLSKFLGANEA---SRSDAVKKIWQYIRQHDLQNPANKREIRCDDKL 87
           A  G+GK   ++  L+KFLG + +   SR+D  K I +++ +  LQN  NK+ I CD  L
Sbjct: 138 ANTGLGKLRVITNDLAKFLGCDPSEMKSRNDVTKAICKHVEEKKLQNQENKKIIMCDTML 197

Spodoptera frugiperda (taxid: 7108)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
18403898	109	SWIB/MDM2 domain-containing protein [Ara	0.947	0.990	0.607	2e-31
297851606	112	SWIB complex BAF60b domain-containing pr	0.947	0.964	0.571	4e-30
225427597	115	PREDICTED: upstream activation factor su	0.982	0.973	0.601	6e-30
33667910	148	SWIb domain-containing protein [Solanum	0.991	0.763	0.588	3e-29
225436221	128	PREDICTED: upstream activation factor su	0.798	0.710	0.659	3e-29
297823353	112	SWIB complex BAF60b domain-containing pr	0.956	0.973	0.601	5e-29
18398106	112	SWIB/MDM2 domain-containing protein [Ara	0.947	0.964	0.562	1e-28
356538435	132	PREDICTED: upstream activation factor su	0.701	0.606	0.712	2e-26
18396594	143	SWIB/MDM2 domain-containing protein [Ara	0.710	0.566	0.679	2e-26
21593643	143	unknown [Arabidopsis thaliana]	0.710	0.566	0.679	2e-26

>gi|18403898|ref|NP_565810.1| SWIB/MDM2 domain-containing protein [Arabidopsis thaliana] gi|13877943|gb|AAK44049.1|AF370234_1 unknown protein [Arabidopsis thaliana] gi|16323472|gb|AAL15230.1| unknown protein [Arabidopsis thaliana] gi|20197355|gb|AAM15040.1| Expressed protein [Arabidopsis thaliana] gi|20197527|gb|AAM15113.1| Expressed protein [Arabidopsis thaliana] gi|21618090|gb|AAM67140.1| unknown [Arabidopsis thaliana] gi|26451839|dbj|BAC43012.1| unknown protein [Arabidopsis thaliana] gi|330254033|gb|AEC09127.1| SWIB/MDM2 domain-containing protein [Arabidopsis thaliana]

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/112 (60%), Positives = 83/112 (74%), Gaps = 4/112 (3%)

Query: 3   ARLFGGYRTMMAAAAKSGAEATAAAGKKAKGGIGKPVPVSAQLSKFLGANEASRSDAVKK 62
           +R+FG  R +MA AA S    T   G     GI K VPVS  L+ F+G NE SR+ AVKK
Sbjct: 2   SRVFGACRVLMAKAASSTGAKTGRQGT----GILKVVPVSKPLANFIGENEVSRTTAVKK 57

Query: 63  IWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFVKSA 114
           IW+YI+ ++LQNP NKREI CD++LKTIF+GKD+VGFLEI+KLLSQHF KSA
Sbjct: 58  IWEYIKLNNLQNPVNKREILCDEQLKTIFSGKDTVGFLEISKLLSQHFPKSA 109

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851606|ref|XP_002893684.1| SWIB complex BAF60b domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297339526|gb|EFH69943.1| SWIB complex BAF60b domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 64/112 (57%), Positives = 81/112 (72%), Gaps = 4/112 (3%)

Query: 3   ARLFGGYRTMMAAAAKSGAEATAAAGKKAKGGIGKPVPVSAQLSKFLGANEASRSDAVKK 62
           +R+FGG+RT+M+ AA   A   A  GK    GI K +PVS QL+ F G +E +R  A+KK
Sbjct: 5   SRVFGGFRTLMSKAASVEAVTVAGEGK----GIFKTLPVSQQLASFAGESELTRGSALKK 60

Query: 63  IWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFVKSA 114
           +W+Y++ H+LQNPANK+EI CDDKLKTIF+GKD VG  EI KLLS HF KS 
Sbjct: 61  VWEYVKLHNLQNPANKKEIHCDDKLKTIFDGKDKVGITEIMKLLSPHFPKSV 112

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427597|ref|XP_002270707.1| PREDICTED: upstream activation factor subunit spp27 [Vitis vinifera] gi|296085458|emb|CBI29190.3| unnamed protein product [Vitis vinifera]

 Score =  134 bits (338), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 68/113 (60%), Positives = 83/113 (73%), Gaps = 1/113 (0%)

Query: 1   MAARLFGGYRTMMAAAAKSGAEATAAAGKKAKGGIGKPVPVSAQLSKFLG-ANEASRSDA 59
           M +R+ GG R +M AA  +    T     +  GGI KPVPVS QL KFLG   +ASRS A
Sbjct: 1   MGSRVLGGCRALMEAAKANANANTNTKVIRQGGGITKPVPVSPQLGKFLGGVPQASRSLA 60

Query: 60  VKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFVK 112
           +KK+W++I+ H+LQNP NK+EI CD+KLKTIF+GKD VGFLEIAKLLS HFVK
Sbjct: 61  IKKVWEHIKLHNLQNPTNKKEICCDEKLKTIFDGKDKVGFLEIAKLLSPHFVK 113

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33667910|gb|AAQ24534.1| SWIb domain-containing protein [Solanum chacoense]

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 70/119 (58%), Positives = 85/119 (71%), Gaps = 6/119 (5%)

Query: 2   AARLFGGY-RTMMAAAAKSGAEATAAAGKKAKG-----GIGKPVPVSAQLSKFLGANEAS 55
           ++R+FG Y RT+MAAA  S  +   A    A G     GI KP P+S  L KF+G +E S
Sbjct: 30  SSRIFGNYCRTLMAAAKTSAGKTPPATTTTAAGKGRSKGILKPQPISPALQKFVGTSEIS 89

Query: 56  RSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFVKSA 114
           R+DAVKKIW YI+ ++LQNPANK+EI CDD LKTIF GKD VGFLEIAKLLS HF K++
Sbjct: 90  RTDAVKKIWDYIKTNNLQNPANKKEINCDDMLKTIFAGKDKVGFLEIAKLLSFHFQKAS 148

Source: Solanum chacoense

Species: Solanum chacoense

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436221|ref|XP_002270166.1| PREDICTED: upstream activation factor subunit spp27 [Vitis vinifera] gi|147798865|emb|CAN68050.1| hypothetical protein VITISV_015104 [Vitis vinifera] gi|296090194|emb|CBI40013.3| unnamed protein product [Vitis vinifera]

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 60/91 (65%), Positives = 72/91 (79%)

Query: 24  TAAAGKKAKGGIGKPVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRC 83
           TAA G    GGI KPVPVS  L KFLG  EASR++AVKKIW++I+ ++LQNP NKREI C
Sbjct: 38  TAAKGPPRSGGITKPVPVSPALRKFLGVPEASRAEAVKKIWEHIKLNNLQNPTNKREILC 97

Query: 84  DDKLKTIFNGKDSVGFLEIAKLLSQHFVKSA 114
           D+KLK++F GKD VGFLEI KLLS HF+K+ 
Sbjct: 98  DEKLKSVFEGKDKVGFLEIGKLLSHHFIKTV 128

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823353|ref|XP_002879559.1| SWIB complex BAF60b domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297325398|gb|EFH55818.1| SWIB complex BAF60b domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  131 bits (329), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 68/113 (60%), Positives = 83/113 (73%), Gaps = 4/113 (3%)

Query: 2   AARLFGGYRTMMAAAAKSGAEATAAAGKKAKGGIGKPVPVSAQLSKFLGANEASRSDAVK 61
            +R+FG  R +MA AA S A      G     GI K VPVS  L+ F+G NE SR+ AVK
Sbjct: 4   VSRVFGACRVLMAKAASSSAAKNGRQGT----GILKVVPVSKPLATFIGENEVSRTTAVK 59

Query: 62  KIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFVKSA 114
           KIW+YI+ ++LQNP NKREI CD++LKTIF+GKD+VGFLEI+KLLSQHF KSA
Sbjct: 60  KIWEYIKLNNLQNPENKREILCDEQLKTIFSGKDTVGFLEISKLLSQHFPKSA 112

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18398106|ref|NP_564382.1| SWIB/MDM2 domain-containing protein [Arabidopsis thaliana] gi|12321306|gb|AAG50727.1|AC079041_20 hypothetical protein [Arabidopsis thaliana] gi|12597845|gb|AAG60155.1|AC074360_20 hypothetical protein [Arabidopsis thaliana] gi|21537302|gb|AAM61643.1| unknown [Arabidopsis thaliana] gi|89001005|gb|ABD59092.1| At1g31760 [Arabidopsis thaliana] gi|332193268|gb|AEE31389.1| SWIB/MDM2 domain-containing protein [Arabidopsis thaliana]

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/112 (56%), Positives = 78/112 (69%), Gaps = 4/112 (3%)

Query: 3   ARLFGGYRTMMAAAAKSGAEATAAAGKKAKGGIGKPVPVSAQLSKFLGANEASRSDAVKK 62
           +R+ GG+RT+M+ AA   A   A  GK    GI K  PVS QL+ F G  E +R  A+KK
Sbjct: 5   SRVLGGFRTLMSKAATVEAVTVAGEGK----GIFKTRPVSQQLASFAGERELTRGSALKK 60

Query: 63  IWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFVKSA 114
           +W+Y++ H+LQNPANK+EI CDDKLKTIF+GKD VG  EI KLLS HF KS 
Sbjct: 61  VWEYVKLHNLQNPANKKEIHCDDKLKTIFDGKDKVGITEIMKLLSPHFPKSV 112

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538435|ref|XP_003537709.1| PREDICTED: upstream activation factor subunit UAF30-like [Glycine max]

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/80 (71%), Positives = 66/80 (82%)

Query: 34  GIGKPVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNG 93
           GI K VPVS++L  FLGA + SR+DAVKK+W YI+  +LQNPANK+EI CD+KLKTIF G
Sbjct: 52  GIQKVVPVSSELGDFLGAPQVSRTDAVKKVWAYIKLQNLQNPANKKEIFCDEKLKTIFEG 111

Query: 94  KDSVGFLEIAKLLSQHFVKS 113
           KD VGF EIAKLLS HFVKS
Sbjct: 112 KDKVGFTEIAKLLSSHFVKS 131

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396594|ref|NP_566210.1| SWIB/MDM2 domain-containing protein [Arabidopsis thaliana] gi|6091763|gb|AAF03473.1|AC009327_12 hypothetical protein [Arabidopsis thaliana] gi|26450613|dbj|BAC42418.1| unknown protein [Arabidopsis thaliana] gi|28372894|gb|AAO39929.1| At3g03590 [Arabidopsis thaliana] gi|332640439|gb|AEE73960.1| SWIB/MDM2 domain-containing protein [Arabidopsis thaliana]

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/81 (67%), Positives = 64/81 (79%)

Query: 34  GIGKPVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNG 93
           GI K  PVS  L++FLG  E SR+DA+K IW YI+ HDLQNPA+KREI CD+ LK IF G
Sbjct: 63  GIFKVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIFEG 122

Query: 94  KDSVGFLEIAKLLSQHFVKSA 114
           KD VGFLEI+KLLS HFVK+A
Sbjct: 123 KDKVGFLEISKLLSPHFVKTA 143

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593643|gb|AAM65610.1| unknown [Arabidopsis thaliana]

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/81 (67%), Positives = 64/81 (79%)

Query: 34  GIGKPVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNG 93
           GI K  PVS  L++FLG  E SR+DA+K IW YI+ HDLQNPA+KREI CD+ LK IF G
Sbjct: 63  GIFKVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIFEG 122

Query: 94  KDSVGFLEIAKLLSQHFVKSA 114
           KD VGFLEI+KLLS HFVK+A
Sbjct: 123 KDKVGFLEISKLLSPHFVKTA 143

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
TAIR|locus:505006294	109	AT2G35605 "AT2G35605" [Arabido	0.947	0.990	0.526	2.2e-25
TAIR|locus:2028671	112	AT1G31760 "AT1G31760" [Arabido	0.938	0.955	0.486	6.8e-24
TAIR|locus:2096404	143	AT3G03590 "AT3G03590" [Arabido	0.657	0.524	0.693	6.8e-24
TAIR|locus:2060469	141	AT2G14880 "AT2G14880" [Arabido	0.649	0.524	0.567	1.5e-19
TAIR|locus:2116189	144	AT4G34290 "AT4G34290" [Arabido	0.649	0.513	0.567	1.9e-19
SGD|S000004846	226	TRI1 "Non-essential sumoylated	0.605	0.305	0.535	1.1e-14
TAIR|locus:2085894	462	AT3G19080 [Arabidopsis thalian	0.657	0.162	0.474	1.6e-14
TAIR|locus:2010197	372	AT1G49520 "AT1G49520" [Arabido	0.596	0.182	0.449	3.1e-13
POMBASE|SPCC285.17	233	spp27 "RNA polymerase I upstre	0.649	0.317	0.44	3.4e-13
ASPGD|ASPL0000053508	279	AN0360 [Emericella nidulans (t	0.622	0.254	0.438	1e-12

TAIR|locus:505006294 AT2G35605 "AT2G35605" [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 59/112 (52%), Positives = 74/112 (66%)

Query:     3 ARLFGGYRTMMXXXXXXXXXXXXXXXXXXXXXXXXPVPVSAQLSKFLGANEASRSDAVKK 62
             +R+FG  R +M                         VPVS  L+ F+G NE SR+ AVKK
Sbjct:     2 SRVFGACRVLMAKAASSTGAKTGRQGTGILKV----VPVSKPLANFIGENEVSRTTAVKK 57

Query:    63 IWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFVKSA 114
             IW+YI+ ++LQNP NKREI CD++LKTIF+GKD+VGFLEI+KLLSQHF KSA
Sbjct:    58 IWEYIKLNNLQNPVNKREILCDEQLKTIFSGKDTVGFLEISKLLSQHFPKSA 109

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2028671 AT1G31760 "AT1G31760" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 54/111 (48%), Positives = 68/111 (61%)

Query:     3 ARLFGGYRTMMXXXXXXXXXXXXXXXXXXXXXXXXPVPVSAQLSKFLGANEASRSDAVKK 62
             +R+ GG+RT+M                          PVS QL+ F G  E +R  A+KK
Sbjct:     5 SRVLGGFRTLMSKAATVEAVTVAGEGKGIFKTR----PVSQQLASFAGERELTRGSALKK 60

Query:    63 IWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFVKS 113
             +W+Y++ H+LQNPANK+EI CDDKLKTIF+GKD VG  EI KLLS HF KS
Sbjct:    61 VWEYVKLHNLQNPANKKEIHCDDKLKTIFDGKDKVGITEIMKLLSPHFPKS 111

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2096404 AT3G03590 "AT3G03590" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 52/75 (69%), Positives = 61/75 (81%)

Query:    40 PVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGF 99
             PVS  L++FLG  E SR+DA+K IW YI+ HDLQNPA+KREI CD+ LK IF GKD VGF
Sbjct:    69 PVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIFEGKDKVGF 128

Query:   100 LEIAKLLSQHFVKSA 114
             LEI+KLLS HFVK+A
Sbjct:   129 LEISKLLSPHFVKTA 143

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

TAIR|locus:2060469 AT2G14880 "AT2G14880" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 42/74 (56%), Positives = 56/74 (75%)

Query:    38 PVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSV 97
             P PVS ++   +   E +R+ A+K+IW YI++HDLQ+P NKREI CD+KLK IF G+D V
Sbjct:    68 PRPVSPEMQDIVELPEIARTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIFEGRDRV 127

Query:    98 GFLEIAKLLSQHFV 111
             GFLEIAKL+  HF+
Sbjct:   128 GFLEIAKLIGPHFL 141

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2116189 AT4G34290 "AT4G34290" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 42/74 (56%), Positives = 55/74 (74%)

Query:    38 PVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSV 97
             P PVS  +   +G  E  R+ A+K+IW YI++HDLQ+P NKR+I CD+KLK IF GK+ V
Sbjct:    71 PRPVSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEGKERV 130

Query:    98 GFLEIAKLLSQHFV 111
             GFLEIAKL+  HF+
Sbjct:   131 GFLEIAKLIGPHFL 144

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

SGD|S000004846 TRI1 "Non-essential sumoylated protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 38/71 (53%), Positives = 51/71 (71%)

Query:    39 VPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVG 98
             V +SA L KFLG+ E  R+  VK IWQYI++HDLQNP ++REI CD+K++ IF GK    
Sbjct:   124 VLLSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIF-GKKMTM 182

Query:    99 FLEIAKLLSQH 109
             F  + KLL++H
Sbjct:   183 F-SMNKLLTKH 192

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005730 "nucleolus" evidence=IEA;IDA

TAIR|locus:2085894 AT3G19080 [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 1.6e-14, P = 1.6e-14
 Identities = 37/78 (47%), Positives = 55/78 (70%)

Query:    38 PVPVSAQLSKFLG--ANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKD 95
             P+P+S  L KFLG   N  SR+D VK++W+YI  +DLQ+P++KR + CD+KLK +F   D
Sbjct:   384 PLPLSDALVKFLGDGENSLSRADVVKRLWEYINHNDLQDPSDKRRVICDEKLKELFE-VD 442

Query:    96 SVGFLEIAKLLSQHFVKS 113
             S     ++KLL+ HF+K+
Sbjct:   443 SFEDTSVSKLLTNHFIKA 460

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2010197 AT1G49520 "AT1G49520" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 3.1e-13, P = 3.1e-13
 Identities = 31/69 (44%), Positives = 50/69 (72%)

Query:    41 VSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFL 100
             +S QL KFLG ++ +R++ VKK+W YIR+HDLQ+P N+R I CD+ L ++F  K ++   
Sbjct:   108 LSPQLEKFLGTSQLARTEVVKKMWAYIREHDLQDPTNRRNILCDESLHSLFRVK-TINMF 166

Query:   101 EIAKLLSQH 109
             ++ K L++H
Sbjct:   167 QMNKALAKH 175

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

POMBASE|SPCC285.17 spp27 "RNA polymerase I upstream activation factor complex subunit Spp27" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 33/75 (44%), Positives = 50/75 (66%)

Query:    38 PVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSV 97
             P+ +S +L++FLG  + SR   VKK+W+YI+ HDLQ+P +KR I CDDKLK++F   D++
Sbjct:   120 PMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVFE-VDTL 178

Query:    98 GFLEIAKLLSQHFVK 112
                 + K L+    K
Sbjct:   179 HMFTMNKYLTNLMTK 193

GO:0000500 "RNA polymerase I upstream activating factor complex" evidence=NAS

GO:0003677 "DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0045943 "positive regulation of transcription from RNA polymerase I promoter" evidence=TAS

GO:0001168 "RNA polymerase I upstream control element sequence-specific DNA binding transcription factor activity" evidence=TAS

ASPGD|ASPL0000053508 AN0360 [Emericella nidulans (taxid:162425)]

 Score = 170 (64.9 bits), Expect = 1.0e-12, P = 1.0e-12
 Identities = 32/73 (43%), Positives = 50/73 (68%)

Query:    38 PVPVSAQLSKFLG-ANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDS 96
             P+ +S  LS  LG A   SR   VKK+W+YI +HDLQ+P+++R+IRCDD ++ +F  +D 
Sbjct:   202 PLNLSPALSALLGGAATLSRPQTVKKLWEYIHEHDLQDPSDRRQIRCDDPMRAVFK-QDR 260

Query:    97 VGFLEIAKLLSQH 109
             +    + K+LSQ+
Sbjct:   261 IHMFTMTKILSQN 273

GO:0008150 "biological_process" evidence=ND

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	114
pfam02201	76	pfam02201, SWIB, SWIB/MDM2 domain	7e-35
smart00151	77	smart00151, SWIB, SWI complex, BAF60b domains	2e-30
COG5531	237	COG5531, COG5531, SWIB-domain-containing proteins	1e-25
PRK06319	860	PRK06319, PRK06319, DNA topoisomerase I/SWI domain	5e-21
PRK14724	987	PRK14724, PRK14724, DNA topoisomerase III; Provisi	4e-20

>gnl|CDD|145386 pfam02201, SWIB, SWIB/MDM2 domain

 Score =  114 bits (288), Expect = 7e-35
 Identities = 47/77 (61%), Positives = 62/77 (80%), Gaps = 1/77 (1%)

Query: 35  IGKPVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGK 94
           + KP P+S  L+KFLGA E SR++ VKK+WQYI++H+LQ+P NKR I CD+KLK+IF G 
Sbjct: 1   LTKPFPLSPDLAKFLGAGELSRTEVVKKLWQYIKEHNLQDPKNKRIILCDEKLKSIF-GG 59

Query: 95  DSVGFLEIAKLLSQHFV 111
           D VGF E++KLLS HF+
Sbjct: 60  DRVGFFEMSKLLSSHFI 76

This family includes the SWIB domain and the MDM2 domain. The p53-associated protein (MDM2) is an inhibitor of the p53 tumour suppressor gene binding the transactivation domain and down regulating the ability of p53 to activate transcription. This family contains the p53 binding domain of MDM2. Length = 76

>gnl|CDD|128456 smart00151, SWIB, SWI complex, BAF60b domains

 Score =  103 bits (259), Expect = 2e-30
 Identities = 38/76 (50%), Positives = 57/76 (75%), Gaps = 1/76 (1%)

Query: 37  KPVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDS 96
           K V +S +L+K LGA E +R++ +K++W+YI++H+LQ+P NKREI CD KL+ IF GKD 
Sbjct: 3   KKVTLSPELAKVLGAPEMTRTEIIKRLWEYIKEHNLQDPQNKREILCDSKLEQIF-GKDR 61

Query: 97  VGFLEIAKLLSQHFVK 112
           +   E+ KLL+ H +K
Sbjct: 62  MDMFEMNKLLTPHLIK 77

Length = 77

>gnl|CDD|227818 COG5531, COG5531, SWIB-domain-containing proteins implicated in chromatin remodeling [Chromatin structure and dynamics]

 Score = 95.6 bits (238), Expect = 1e-25
 Identities = 39/104 (37%), Positives = 57/104 (54%), Gaps = 8/104 (7%)

Query: 16  AAKSGAEATAAAGKKAKGGI-------GKPVPVSAQLSKFLGANEASRSDAVKKIWQYIR 68
             ++G        KK K          G+ V +S +L+  LG    +R +AVKK+W+YI+
Sbjct: 95  ETENGDTEGKETDKKKKSSTISKNSPSGEKVKLSPKLAAILGLEPGTRPEAVKKLWKYIK 154

Query: 69  QHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFVK 112
           +H+LQ+P NKR I CD KLK +  G D +   E+ K LS H +K
Sbjct: 155 KHNLQDPNNKRLILCDSKLKKVL-GSDPIDMFELTKPLSPHLIK 197

Length = 237

>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein; Validated

 Score = 86.4 bits (214), Expect = 5e-21
 Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 7/105 (6%)

Query: 14  AAAAKSGAEATAAAGKKAKGGI------GKPVPVSAQLSKFLGANEASRSDAVKKIWQYI 67
           +A+ K  A  T     KAK         G     S  L+  +GA    R +A KK+W YI
Sbjct: 757 SASTKGKAAKTVKKKSKAKSKKTTKKRAGPLYTPSPALAAMIGAEPVGRGEATKKVWDYI 816

Query: 68  RQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFVK 112
           ++H LQ+P NK+ I  D KL+ +  G D +   +++K LSQH +K
Sbjct: 817 KEHGLQSPENKKLIIPDSKLQGVI-GPDPIDMFQLSKKLSQHLIK 860

Length = 860

>gnl|CDD|237803 PRK14724, PRK14724, DNA topoisomerase III; Provisional

 Score = 83.5 bits (206), Expect = 4e-20
 Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 1/96 (1%)

Query: 14  AAAAKSGAEATAAAGKKAKGGIGKPVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQ 73
            AA  + A+    A KK        +  SA L+  +GA   +R + +KK+W YI+ ++LQ
Sbjct: 891 VAAKTAAAKTPRKAAKKKAAPPAAGLKPSAALAAVIGAEPVARPEVIKKLWDYIKANNLQ 950

Query: 74  NPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQH 109
           +PA+KR I  D KL+ +F GKD V   E+A ++ +H
Sbjct: 951 DPADKRAINADAKLRPVF-GKDQVTMFELAGIVGKH 985

Length = 987

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	114
smart00151	77	SWIB SWI complex, BAF60b domains.	99.95
PF02201	76	SWIB: SWIB/MDM2 domain; InterPro: IPR003121 The SW	99.95
KOG1946	240	consensus RNA polymerase I transcription factor UA	99.94
PRK14724	987	DNA topoisomerase III; Provisional	99.89
COG5531	237	SWIB-domain-containing proteins implicated in chro	99.88
KOG2570	420	consensus SWI/SNF transcription activation complex	99.71
PRK06319	860	DNA topoisomerase I/SWI domain fusion protein; Val	99.58
KOG2522	560	consensus Filamentous baseplate protein Ligatin, c	95.74
PRK05350	82	acyl carrier protein; Provisional	89.38
PRK05828	84	acyl carrier protein; Validated	86.68
CHL00124	82	acpP acyl carrier protein; Validated	83.84
PRK12449	80	acyl carrier protein; Provisional	82.38

>smart00151 SWIB SWI complex, BAF60b domains

Probab=99.95  E-value=1.7e-28  Score=162.40  Aligned_cols=77  Identities=49%  Similarity=0.933  Sum_probs=74.0

Q ss_pred             CCCCccCCHHHHhhhCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhccccC
Q 048564           35 IGKPVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFVK  112 (114)
Q Consensus        35 ~~~~~~lSp~La~flG~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl~k  112 (114)
                      ++++|.+||+|++|+|.+++||+||++.||+|||+||||||+|++.|+||+.|+++|| ++++.+++|+++|++||.+
T Consensus         1 ~~~~~~ls~~L~~~lg~~~~tr~ev~~~lw~YIk~n~L~d~~~k~~i~~D~~L~~l~~-~~~v~~~~~~~ll~~Hl~~   77 (77)
T smart00151        1 ITKKVTLSPELAKVLGAPEMTRTEIIKRLWEYIKEHNLQDPQNKREILCDSKLEQIFG-KDRMDMFEMNKLLTPHLIK   77 (77)
T ss_pred             CCCcccCCHHHHHHhCCCcCcHHHHHHHHHHHHHHhcccCCccCCEEecCHHHHHHHC-cCeecHHHHHHHHHHHcCC
Confidence            4689999999999999999999999999999999999999999999999999999998 7899999999999999975

>PF02201 SWIB: SWIB/MDM2 domain; InterPro: IPR003121 The SWI/SNF family of complexes, which are conserved from yeast to humans, are ATP-dependent chromatin-remodelling proteins that facilitate transcription activation []

Probab=99.95  E-value=6.1e-30  Score=169.02  Aligned_cols=76  Identities=51%  Similarity=0.937  Sum_probs=70.5

Q ss_pred             CCCCccCCHHHHhhhCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhcccc
Q 048564           35 IGKPVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFV  111 (114)
Q Consensus        35 ~~~~~~lSp~La~flG~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl~  111 (114)
                      |+++|++||+|++++|.+++||+||++.||+||++||||||+|++.|.||+.|++||+ .++|++++|+++|++||.
T Consensus         1 ~~k~~~ls~~L~~~lg~~~~sr~~v~~~lw~YIk~~~L~dp~~k~~I~cD~~L~~lf~-~~~v~~~~i~~~l~~hl~   76 (76)
T PF02201_consen    1 FPKRFKLSPELAEFLGEDELSRSEVVKRLWQYIKENNLQDPKDKRIIICDEKLKKLFG-KDSVNFFEIPKLLKPHLI   76 (76)
T ss_dssp             -EEEEHHHHHHHHHTT-SCEEHHHHHHHHHHHHHHTTSBESSSTTEEE-TTSHHHHHH-TSECSEEETTHHHHHHHE
T ss_pred             CCCCccCCHHHHHHhCCCCCCHHHHHHHHHHHHHHhcCCCcccCceEecCHHHHHHhC-CCeecHhhHHHHHHHhcC
Confidence            5678999999999999999999999999999999999999999999999999999999 599999999999999984

The mammalian complexes are made up of 9-12 proteins called BAFs (BRG1-associated factors). The BAF60 family have at least three members: BAF60a, which is ubiquitous, BAF60b and BAF60c, which are expressed in muscle and pancreatic tissues, respectively. BAF60b is present in alternative forms of the SWI/SNF complex, including complex B (SWIB), which lacks BAF60a. The SWIB domain is a conserved region found within the BAF60b proteins [], and can be found fused to the C terminus of DNA topoisomerase in Chlamydia. MDM2 is an oncoprotein that acts as a cellular inhibitor of the p53 tumour suppressor by binding to the transactivation domain of p53 and suppressing its ability to activate transcription []. p53 acts in response to DNA damage, inducing cell cycle arrest and apoptosis. Inactivation of p53 is a common occurrence in neoplastic transformations. The core of MDM2 folds into an open bundle of four helices, which is capped by two small 3-stranded beta-sheets. It consists of a duplication of two structural repeats. MDM2 has a deep hydrophobic cleft on which the p53 alpha-helix binds; p53 residues involved in transactivation are buried deep within the cleft of MDM2, thereby concealing the p53 transactivation domain. The SWIB and MDM2 domains are homologous and share a common fold.; GO: 0005515 protein binding; PDB: 1V31_A 3FE7_A 3JZQ_B 3EQY_B 2VYR_A 3JZO_A 3DAB_E 3LBJ_E 3FEA_A 3FDO_A ....

>KOG1946 consensus RNA polymerase I transcription factor UAF [Transcription]

Probab=99.94  E-value=4.1e-27  Score=184.88  Aligned_cols=80  Identities=54%  Similarity=0.976  Sum_probs=77.0

Q ss_pred             CCCCCCccCCHHHHhhhCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhccccC
Q 048564           33 GGIGKPVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFVK  112 (114)
Q Consensus        33 ~g~~~~~~lSp~La~flG~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl~k  112 (114)
                      +|+++.+.+|+.|+.|+|.+++||.+|++.||+|||+||||||.||+.|+||++|+.||++ ..|++|+|+++|.+||++
T Consensus        98 ~g~~kl~~ls~~L~~~~G~~~lsR~~vvk~iw~YIke~nLqDP~nkr~IlCDekL~~iF~~-k~v~~fem~KLL~~H~~~  176 (240)
T KOG1946|consen   98 WGSTKLIPLSPSLARFVGTSELSRTDVVKKIWAYIKEHNLQDPKNKREILCDEKLKSIFGK-KRVGMFEMLKLLTKHFLK  176 (240)
T ss_pred             cCcccccccCHHHHhhcccccccHHHHHHHHHHHHHHhccCCccccCeeeeHHHHHHHhcc-CccceeeHHHHHHHhccC
Confidence            6999999999999999999999999999999999999999999999999999999999995 569999999999999987


Q ss_pred             C
Q 048564          113 S  113 (114)
Q Consensus       113 ~  113 (114)
                      .
T Consensus       177 ~  177 (240)
T KOG1946|consen  177 N  177 (240)
T ss_pred             c
Confidence            4

>PRK14724 DNA topoisomerase III; Provisional

Probab=99.89  E-value=8e-24  Score=190.99  Aligned_cols=78  Identities=36%  Similarity=0.700  Sum_probs=74.6

Q ss_pred             CCCCCCccCCHHHHhhhCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhcccc
Q 048564           33 GGIGKPVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFV  111 (114)
Q Consensus        33 ~g~~~~~~lSp~La~flG~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl~  111 (114)
                      -.+...|.+||+|++|||..++||++|++.||+|||+||||||.|++.|+||++|+.||| ++++.|++|+++|++||.
T Consensus       910 ~~~~~~~~ls~~La~~lg~~~~~r~~v~~~lW~YIK~~~Lqdp~~k~~i~cD~~L~~vfg-~~~~~~~~~~~~l~~hl~  987 (987)
T PRK14724        910 APPAAGLKPSAALAAVIGAEPVARPEVIKKLWDYIKANNLQDPADKRAINADAKLRPVFG-KDQVTMFELAGIVGKHLS  987 (987)
T ss_pred             cccccccCCCHHHHHHhCCCcCCHHHHHHHHHHHHHHccCCCcccCCeeccchHHHHHhC-CCcccHHHHHHHHHHhcC
Confidence            347779999999999999999999999999999999999999999999999999999998 899999999999999984

>COG5531 SWIB-domain-containing proteins implicated in chromatin remodeling [Chromatin structure and dynamics]

Probab=99.88  E-value=2.5e-23  Score=163.16  Aligned_cols=80  Identities=43%  Similarity=0.806  Sum_probs=76.4

Q ss_pred             CCCCCCCccCCHHHHhhhCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhcccc
Q 048564           32 KGGIGKPVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFV  111 (114)
Q Consensus        32 ~~g~~~~~~lSp~La~flG~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl~  111 (114)
                      ++...+.|.+||.|+.|||..++||+|||+.||+|||.||||||+||+.|.||++|+.||| .+.+.||+|.+.|.+|++
T Consensus       118 ~~~~~~~~~lS~~La~ilG~~~~tr~~~v~~lw~YIk~h~lq~~~nkr~I~~D~~L~~v~g-~~p~~mf~~~k~l~~hl~  196 (237)
T COG5531         118 NSPSGEKVKLSPKLAAILGLEPGTRPEAVKKLWKYIKKHNLQDPNNKRLILCDSKLKKVLG-SDPIDMFELTKPLSPHLI  196 (237)
T ss_pred             ccCCCCceecCHHHHHHhCCCCCCccHHHHHHHHHHHHhcCCCccccceecccHHHHHHhC-CCchhhhhhhccccccee
Confidence            3457789999999999999999999999999999999999999999999999999999999 789999999999999998


Q ss_pred             C
Q 048564          112 K  112 (114)
Q Consensus       112 k  112 (114)
                      +
T Consensus       197 ~  197 (237)
T COG5531         197 K  197 (237)
T ss_pred             c
Confidence            7

>KOG2570 consensus SWI/SNF transcription activation complex subunit [Chromatin structure and dynamics; Transcription]

Probab=99.71  E-value=6.6e-18  Score=140.69  Aligned_cols=77  Identities=32%  Similarity=0.635  Sum_probs=73.3

Q ss_pred             CCCCccCCHHHHhhhCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhccccC
Q 048564           35 IGKPVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFVK  112 (114)
Q Consensus        35 ~~~~~~lSp~La~flG~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl~k  112 (114)
                      -...|++||.|+.+||....||++|+..||.|||.|+||||.++.+|.||..|+++|| ++++.|.+|+.+|++||..
T Consensus       205 ~P~~fklsp~La~lLGi~t~Trp~iI~alWqYIk~n~Lqd~~e~~~incD~~l~qif~-~~rl~F~elp~~l~~lL~P  281 (420)
T KOG2570|consen  205 QPEEFKLSPRLANLLGIHTGTRPDIVTALWQYIKTNKLQDPEDSDFINCDKALEQIFG-VDRLKFPELPQLLNPLLSP  281 (420)
T ss_pred             CCcccccCHHHHHHhhhccCcchHHHHHHHHHHHHhccCCcccchhhcchHHHHHhhc-ccccccccchhhhhhccCC
Confidence            3455899999999999999999999999999999999999999999999999999998 8999999999999999975

>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated

Probab=99.58  E-value=1.5e-15  Score=135.92  Aligned_cols=77  Identities=38%  Similarity=0.682  Sum_probs=72.7

Q ss_pred             CCCCccCCHHHHhhhCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhccccC
Q 048564           35 IGKPVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFVK  112 (114)
Q Consensus        35 ~~~~~~lSp~La~flG~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl~k  112 (114)
                      ...+|.+|++|+.++|..+++|+++++.+|+||++|+||||+||+.|.||++|+++|+ ++.+.+++|+++++.|+.|
T Consensus       784 ~~~~~~~S~~La~~~g~~~~sr~~~~~~lw~yIk~~~lqdp~~Kr~i~~d~kl~kvf~-~~~~~~~~~~k~l~~hl~~  860 (860)
T PRK06319        784 AGPLYTPSPALAAMIGAEPVGRGEATKKVWDYIKEHGLQSPENKKLIIPDSKLQGVIG-PDPIDMFQLSKKLSQHLIK  860 (860)
T ss_pred             cccccccccccccccCcCccCchHHHHHHHHHHHHhcccCccccccCCCchhhhhhhC-cCccchhhhHHHHHhhhcC
Confidence            3455889999999999999999999999999999999999999999999999999998 7899999999999999875

>KOG2522 consensus Filamentous baseplate protein Ligatin, contains PUA domain [Translation, ribosomal structure and biogenesis]

Probab=95.74  E-value=0.014  Score=50.62  Aligned_cols=58  Identities=21%  Similarity=0.246  Sum_probs=47.3

Q ss_pred             CCCCccCCHHHHhhh---CC---CccCHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhC
Q 048564           35 IGKPVPVSAQLSKFL---GA---NEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFN   92 (114)
Q Consensus        35 ~~~~~~lSp~La~fl---G~---~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg   92 (114)
                      +...|+.+.-...+|   |.   +-.|-+||...+.+||+.|||-|+.||..|+.|+-|-+...
T Consensus       357 i~~lYk~~~~~~~Lf~evg~~kg~lyt~seir~~V~kYi~knnLad~~nKg~VrLDpILfd~~~  420 (560)
T KOG2522|consen  357 ILTLYKPFNLAKDLFKEVGLAKGTLYTSSEIRSAVSKYISKNNLADTKNKGKVRLDPILFDMVN  420 (560)
T ss_pred             eeeeeccchHHHHHHHhcCccccceeeHHHHHHHHHHHhhhhhccccccCCcEEeccHHHHHHH
Confidence            445677766555554   43   56889999999999999999999999999999999888654

>PRK05350 acyl carrier protein; Provisional

Probab=89.38  E-value=0.57  Score=30.45  Aligned_cols=53  Identities=11%  Similarity=0.234  Sum_probs=43.6

Q ss_pred             cCHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhccc
Q 048564           54 ASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHF  110 (114)
Q Consensus        54 ~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl  110 (114)
                      |+|.+|...|.++|.+. +.-  +...|.+|..|..-+| -+++.+-+|.-.|..+|
T Consensus         2 m~~~~i~~~v~~ii~~~-~~~--~~~~i~~d~~l~~dlg-~DSld~veli~~lE~~f   54 (82)
T PRK05350          2 MTREEILERLRAILVEL-FEI--DPEDITPEANLYEDLD-LDSIDAVDLVVHLQKLT   54 (82)
T ss_pred             CCHHHHHHHHHHHHHHH-hCC--CHHHCCCCccchhhcC-CCHHHHHHHHHHHHHHH
Confidence            78999999999999987 432  2246999999988787 79999999988888876

>PRK05828 acyl carrier protein; Validated

Probab=86.68  E-value=1.6  Score=29.08  Aligned_cols=53  Identities=15%  Similarity=0.250  Sum_probs=41.7

Q ss_pred             cCHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhccc
Q 048564           54 ASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHF  110 (114)
Q Consensus        54 ~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl  110 (114)
                      |||.+|..+|-+.|.+.++.-+.  .-|.+|..|.+ +| -+++.+.++.-.|..+|
T Consensus         1 m~~~eI~~~i~~ii~e~~~~~~~--d~i~~~~~~~d-Lg-~DSLd~velv~~lE~~f   53 (84)
T PRK05828          1 MQEMEILLKIKEIAKKKNFAVTL--DESNINKPYRE-LK-IDSLDMFSIIVSLESEF   53 (84)
T ss_pred             CCHHHHHHHHHHHHHHhccCCCc--ccccCCCCHHh-cC-CCHHHHHHHHHHHHHHH
Confidence            78999999999999886554322  24678888877 76 68899888888887766

>CHL00124 acpP acyl carrier protein; Validated

Probab=83.84  E-value=1.6  Score=28.04  Aligned_cols=53  Identities=15%  Similarity=0.293  Sum_probs=42.0

Q ss_pred             cCHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhccc
Q 048564           54 ASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHF  110 (114)
Q Consensus        54 ~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl  110 (114)
                      |+|.+|...|-++|.+.-=.+|.   .|.+|..|..-+| -+++.+-+|...|...|
T Consensus         1 M~~~~i~~~l~~ii~~~~~~~~~---~i~~d~~l~~dlg-~DSl~~~eli~~le~~f   53 (82)
T CHL00124          1 MTKNDIFEKVQSIVAEQLGIEKS---EVTLDANFTRDLG-ADSLDVVELVMAIEEKF   53 (82)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHH---HCCCCcchhhhcC-CcHHHHHHHHHHHHHHH
Confidence            68999999999999887423333   5999999999887 68888888887777655

>PRK12449 acyl carrier protein; Provisional

Probab=82.38  E-value=3.6  Score=26.17  Aligned_cols=53  Identities=17%  Similarity=0.261  Sum_probs=41.3

Q ss_pred             cCHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhccc
Q 048564           54 ASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHF  110 (114)
Q Consensus        54 ~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl  110 (114)
                      |+|.+|...|-+++.+.-=.++.   .|.+|..|..-+| -+++.+.+|.-.|...|
T Consensus         1 m~~~~i~~~l~~il~~~~~~~~~---~i~~~~~l~~dlg-~DSl~~~~li~~lE~~f   53 (80)
T PRK12449          1 MTREEIFERLINLIQKQRSYLSL---AITEQTHLKDDLA-VDSIELVEFIINVEDEF   53 (80)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCcc---ccCCCCcHHHHcC-CcHHHHHHHHHHHHHHh
Confidence            57899999999999875433333   4899999999997 78888888877776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	114
1uhr_A	93	Solution Structure Of The Swib Domain Of Mouse Brg1		2e-06
1v31_A	93	Solution Structure Of The SwibMDM2 DOMAIN OF THE Hy		3e-05

>pdb|1UHR|A Chain A, Solution Structure Of The Swib Domain Of Mouse Brg1- Associated Factor 60a Length = 93

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 41  VSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFL 100
           +  +L++ LG +  +R   ++ +WQYI+ H LQ+P  +  + CD  L+ IF  +  + F 
Sbjct: 14  LDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQ-RMKFS 72
Query: 101 EIAKLL 106
           EI + L
Sbjct: 73  EIPQRL 78

>pdb|1V31|A Chain A, Solution Structure Of The SwibMDM2 DOMAIN OF THE Hypothetical Protein At5g14170 From Arabidopsis Thaliana Length = 93

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 41  VSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFL 100
           +S  L   LG    +R   +  IW Y++   LQNP +     CD  L+ +F G++ + F 
Sbjct: 14  LSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVF-GEEKLKFT 72
Query: 101 EIAKLLSQHF 110
            +++ +S H 
Sbjct: 73  MVSQKISHHL 82

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	114
1v31_A	93	Hypothetical protein RAFL11-05-P19; SWI/SNF comple	7e-35
1uhr_A	93	SWI/SNF related, matrix associated, actin dependen	3e-33
1v32_A	101	AT5G08430, hypothetical protein RAFL09-47-K03; SWI	6e-28
1ycq_A	107	MDM2, MDM2; anti-oncogene, DNA-binding, transcript	8e-08

>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1 Length = 93

 Score =  114 bits (287), Expect = 7e-35
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)

Query: 28  GKKAKGGIGKPVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKL 87
           G     G+ +   +S  L   LG    +R   +  IW Y++   LQNP +     CD  L
Sbjct: 1   GSSGSSGVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAAL 60

Query: 88  KTIFNGKDSVGFLEIAKLLSQHFVK 112
           + +F G++ + F  +++ +S H   
Sbjct: 61  QKVF-GEEKLKFTMVSQKISHHLSP 84

>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1 Length = 93

 Score =  110 bits (276), Expect = 3e-33
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)

Query: 28  GKKAKGGIGKPVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKL 87
           G     G      +  +L++ LG +  +R   ++ +WQYI+ H LQ+P  +  + CD  L
Sbjct: 1   GSSGSSGQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYL 60

Query: 88  KTIFNGKDSVGFLEIAKLLSQHFVK 112
           + IF     + F EI + L    + 
Sbjct: 61  QQIF-ESQRMKFSEIPQRLHALLMP 84

>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1 Length = 101

 Score = 97.2 bits (242), Expect = 6e-28
 Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 7/79 (8%)

Query: 42  SAQLSKFLG------ANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKD 95
           S QL +FL       +   SR D    I +YI +  L +P+NK+++ CD +L  +F G  
Sbjct: 17  SRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLF-GTR 75

Query: 96  SVGFLEIAKLLSQHFVKSA 114
           ++  +++  LL +H+ ++ 
Sbjct: 76  TIFRMKVYDLLEKHYKENQ 94

>1ycq_A MDM2, MDM2; anti-oncogene, DNA-binding, transcription regulation, nuclear protein, complex (oncogene protein/peptide), phosphorylation, activator; 2.30A {Xenopus laevis} SCOP: a.42.1.1 Length = 107

 Score = 45.7 bits (107), Expect = 8e-08
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 4/74 (5%)

Query: 37  KPVPVSAQLSKFLGANEA--SRSDAVKKIWQYIRQHDLQNPANKREIRC-DDKLKTIFNG 93
           +P P+   L K  GA +   +  + +  + QYI    L +   +  + C +D L  +F G
Sbjct: 13  QPTPLLLSLLKSAGAQKETFTMKEVIYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELF-G 71

Query: 94  KDSVGFLEIAKLLS 107
                  E  +L +
Sbjct: 72  VQEFSVKEPRRLYA 85

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	114
1v31_A	93	Hypothetical protein RAFL11-05-P19; SWI/SNF comple	99.97
1uhr_A	93	SWI/SNF related, matrix associated, actin dependen	99.96
1v32_A	101	AT5G08430, hypothetical protein RAFL09-47-K03; SWI	99.96
3dac_M	130	MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X	97.67
3fea_A	100	MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, p	97.44
2z5s_M	140	MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylat	97.39
1ycq_A	107	MDM2, MDM2; anti-oncogene, DNA-binding, transcript	97.37
1z1m_A	119	Ubiquitin-protein ligase E3 MDM2; peptide-binding	97.28
2axi_A	115	Ubiquitin-protein ligase E3 MDM2; drug design, pro	97.07
2kwl_A	84	ACP, acyl carrier protein; structural genomics, se	86.08

>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1

Probab=99.97  E-value=4.5e-31  Score=179.90  Aligned_cols=79  Identities=25%  Similarity=0.589  Sum_probs=75.4

Q ss_pred             CCCCCccCCHHHHhhhCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhccccCC
Q 048564           34 GIGKPVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFVKS  113 (114)
Q Consensus        34 g~~~~~~lSp~La~flG~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl~k~  113 (114)
                      .+.++|++||+|++|+|..++||++|++.||+|||+||||||+||+.|+||++|++||| ++++.|++|+++|++||.+.
T Consensus         7 ~~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~L~~lfg-~~~v~~~~~~klL~~Hl~p~   85 (93)
T 1v31_A            7 GVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFG-EEKLKFTMVSQKISHHLSPP   85 (93)
T ss_dssp             SSCCCEECCHHHHHHSCCSEECSHHHHHHHHHHHHHTTCBCSSCSSEEECCSHHHHHSC-SSEEETTTTHHHHHHHCBCC
T ss_pred             CCCCccccCHHHHHHHCCCccCHHHHHHHHHHHHHHccCcCcccCceeehhHHHHHHhC-CCcccHHHHHHHHHHhcCCC
Confidence            45689999999999999999999999999999999999999999999999999999997 89999999999999999763

>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1

Probab=99.96  E-value=1.6e-30  Score=177.27  Aligned_cols=78  Identities=27%  Similarity=0.577  Sum_probs=74.4

Q ss_pred             CCCCccCCHHHHhhhCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhccccCC
Q 048564           35 IGKPVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFVKS  113 (114)
Q Consensus        35 ~~~~~~lSp~La~flG~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl~k~  113 (114)
                      -.++|++||+|++|+|.+++||++|++.||+|||+||||||+||+.|+||++|++||| ++++.|++|+++|++||...
T Consensus         8 ~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~Lk~lfg-~~~v~~~~~~klL~~Hl~p~   85 (93)
T 1uhr_A            8 QPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFE-SQRMKFSEIPQRLHALLMPP   85 (93)
T ss_dssp             SCCEEEECTTHHHHTCCSEEEHHHHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHTC-CSSEEGGGSHHHHHHHEECS
T ss_pred             CCCccCcCHHHHHHHCCCccCHHHHHHHHHHHHHhccCCCccccceeechHHHHHHhC-CCcccHHHHHHHHHHhcCCC
Confidence            4578999999999999999999999999999999999999999999999999999997 79999999999999999763

>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1

Probab=99.96  E-value=2.4e-29  Score=174.24  Aligned_cols=74  Identities=31%  Similarity=0.518  Sum_probs=70.5

Q ss_pred             ccCCHHHHhhh---CC---CccCHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhccccC
Q 048564           39 VPVSAQLSKFL---GA---NEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFVK  112 (114)
Q Consensus        39 ~~lSp~La~fl---G~---~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl~k  112 (114)
                      -.+||+|++||   |.   +++||++|++.||+|||+||||||.||+.|+||++|++||| +++|.|++|+++|++||.+
T Consensus        14 ~w~S~eLa~fl~~iG~~~~~~~sR~eVvk~lW~YIK~nnLQdp~~Kr~I~cD~kLk~lFg-~~~v~~~~m~klL~~Hl~~   92 (101)
T 1v32_A           14 GWGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFG-TRTIFRMKVYDLLEKHYKE   92 (101)
T ss_dssp             SSSCHHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHTC-CSEEETTHHHHHHHHHSCS
T ss_pred             ccCCHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhhcCcCcccCCeeeccHHHHHHHC-CCcccHHHHHHHHHHHcCc
Confidence            38999999999   87   67999999999999999999999999999999999999997 8999999999999999987


Q ss_pred             C
Q 048564          113 S  113 (114)
Q Consensus       113 ~  113 (114)
                      .
T Consensus        93 ~   93 (101)
T 1v32_A           93 N   93 (101)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3dac_M MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio}

Probab=97.67  E-value=5.5e-05  Score=53.98  Aligned_cols=74  Identities=20%  Similarity=0.339  Sum_probs=63.4

Q ss_pred             CccCCHHHHhhh---C--CCccCHHHHHHHHHHHHHHhCCCCCCCCCccccc-hhHHhhhCCCCcccHHH---HHHHHhc
Q 048564           38 PVPVSAQLSKFL---G--ANEASRSDAVKKIWQYIRQHDLQNPANKREIRCD-DKLKTIFNGKDSVGFLE---IAKLLSQ  108 (114)
Q Consensus        38 ~~~lSp~La~fl---G--~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cD-ekLk~Lfg~~~~v~~~e---l~~lL~~  108 (114)
                      .++--++|-.+|   |  .+..|+.||...+=+||-.+.|.||.+..+|.|. +.|.++|| +++|++.+   |.+.|.+
T Consensus        24 ~Vrpk~~lL~iLq~aGA~~dvfT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~llG-v~sFSVkdp~~L~~mL~~  102 (130)
T 3dac_M           24 QVHPRAPLLQILKVAGAQEEVFTVKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLE-VGSFSVKNPSPLYEMLKR  102 (130)
T ss_dssp             EEEECHHHHHHHHHTTCCCSSEEHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHT-SSEEETTSCHHHHHHHHH
T ss_pred             ecCCcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceeEeCCcccccccC-CcceeecCcHHHHHHHHh
Confidence            355557777777   4  3789999999999999999999999999999996 78999998 89998866   9999988


Q ss_pred             cccC
Q 048564          109 HFVK  112 (114)
Q Consensus       109 Hl~k  112 (114)
                      +|+.
T Consensus       103 NLv~  106 (130)
T 3dac_M          103 NLVI  106 (130)
T ss_dssp             HEEE
T ss_pred             heec
Confidence            8764

>3fea_A MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, protein-protein interaction, metal-binding; HET: PM3 6CW; 1.33A {Homo sapiens} SCOP: a.42.1.0 PDB: 3fe7_A* 3u15_A* 2vyr_A 3lbj_E* 3fdo_A 3dab_A 3jzp_A 3jzo_A 3jzq_A 3eqy_A

Probab=97.44  E-value=0.00012  Score=50.12  Aligned_cols=73  Identities=21%  Similarity=0.347  Sum_probs=62.2

Q ss_pred             ccCCHHHHhhh---C--CCccCHHHHHHHHHHHHHHhCCCCCCCCCccccc-hhHHhhhCCCCcccHH---HHHHHHhcc
Q 048564           39 VPVSAQLSKFL---G--ANEASRSDAVKKIWQYIRQHDLQNPANKREIRCD-DKLKTIFNGKDSVGFL---EIAKLLSQH  109 (114)
Q Consensus        39 ~~lSp~La~fl---G--~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cD-ekLk~Lfg~~~~v~~~---el~~lL~~H  109 (114)
                      ++--++|-.+|   |  .+..|+.||+..+=+||-.+.|.||.+..+|.|. +.|-++|| ++++++.   .+.+.|.+|
T Consensus        16 Vrpk~~lL~iLq~aGA~~d~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~G-~~sFsvkdp~~l~~ml~~n   94 (100)
T 3fea_A           16 VRPKLPLLKILHAAGAQGEMFTVKEVMHYLGQYIMVKQLYDQQEQHMVYCGGDLLGELLG-RQSFSVKDPSPLYDMLRKN   94 (100)
T ss_dssp             BEECHHHHHHHHHTTCCSSCBCHHHHHHHHHHHHHHTTCEETTEEEEEECTTSHHHHHHT-CSEEETTCCHHHHHHHHHH
T ss_pred             cCCcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceEEeCCCccccccC-CcceeecCchHHHHHHHhh
Confidence            44556777776   4  3789999999999999999999999999999997 78899998 8888774   888899888


Q ss_pred             ccC
Q 048564          110 FVK  112 (114)
Q Consensus       110 l~k  112 (114)
                      |+.
T Consensus        95 Lv~   97 (100)
T 3fea_A           95 LVT   97 (100)
T ss_dssp             EEC
T ss_pred             cee
Confidence            864

>2z5s_M MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylation, activator, anti-oncogene, apoptosis, cell cycle, cytoplasm, disease mutation, DNA- binding; 2.30A {Danio rerio} PDB: 2z5t_M

Probab=97.39  E-value=0.00022  Score=51.31  Aligned_cols=72  Identities=19%  Similarity=0.336  Sum_probs=59.7

Q ss_pred             CccCCHHHHhhh---C--CCccCHHHHHHHHHHHHHHhCCCCCCCCCccccc-hhHHhhhCCCCcccHH---HHHHHHhc
Q 048564           38 PVPVSAQLSKFL---G--ANEASRSDAVKKIWQYIRQHDLQNPANKREIRCD-DKLKTIFNGKDSVGFL---EIAKLLSQ  108 (114)
Q Consensus        38 ~~~lSp~La~fl---G--~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cD-ekLk~Lfg~~~~v~~~---el~~lL~~  108 (114)
                      .++--++|-.+|   |  .+..|+.||+..|-+||-.+.|.|+.+..+|.|. +.|-+||| +++|++-   -+.+.|.+
T Consensus        23 ~VrPk~~LLkiLq~aGA~~~~fT~keVm~YLGqYIm~KqLYD~~~qhiV~C~~D~LG~l~G-v~sFSVKdp~~ly~ML~~  101 (140)
T 2z5s_M           23 QVHPRAPLLQILKVAGAQEEVFTLKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLE-VGSFSVKNPSPVYEMLKR  101 (140)
T ss_dssp             CBEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHT-SSEEETTBCHHHHHHHHH
T ss_pred             eecCcHHHHHHHHHhCcccceeeHHHHHHHHHHHHHHhhhcccccCcEEeeCCcccccccC-ccceeecCcHHHHHHHHH
Confidence            677778888888   4  3689999999999999999999999999999997 77899998 7888774   44455554


Q ss_pred             cc
Q 048564          109 HF  110 (114)
Q Consensus       109 Hl  110 (114)
                      .|
T Consensus       102 NL  103 (140)
T 2z5s_M          102 NL  103 (140)
T ss_dssp             HE
T ss_pred             hc
Confidence            44

>1ycq_A MDM2, MDM2; anti-oncogene, DNA-binding, transcription regulation, nuclear protein, complex (oncogene protein/peptide), phosphorylation, activator; 2.30A {Xenopus laevis} SCOP: a.42.1.1

Probab=97.37  E-value=0.00033  Score=48.55  Aligned_cols=72  Identities=19%  Similarity=0.371  Sum_probs=58.4

Q ss_pred             CccCCHHHHhhh---C--CCccCHHHHHHHHHHHHHHhCCCCCCCCCccccc-hhHHhhhCCCCcccHHH---HHHHHhc
Q 048564           38 PVPVSAQLSKFL---G--ANEASRSDAVKKIWQYIRQHDLQNPANKREIRCD-DKLKTIFNGKDSVGFLE---IAKLLSQ  108 (114)
Q Consensus        38 ~~~lSp~La~fl---G--~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cD-ekLk~Lfg~~~~v~~~e---l~~lL~~  108 (114)
                      .++-.+.|-.+|   |  ....|+.+|+..+-+||-.+.|.|+.+..+|.|. +.|-++|| ++++++-+   +.+.|.+
T Consensus        11 ~VrPk~~LLklL~~~GA~~~~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~g-~~~Fsvkdp~~l~~ml~~   89 (107)
T 1ycq_A           11 LVQPTPLLLSLLKSAGAQKETFTMKEVIYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELFG-VQEFSVKEPRRLYAMISR   89 (107)
T ss_dssp             CBEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHT-CSEEETTCHHHHHHHHHT
T ss_pred             ccCccHHHHHHHHHhccccceeeehhhhhhHHHHHhHHhhcccccCcEEeeCCcccccccC-ccceeecCcHHHHHHHHH
Confidence            456667777777   3  3678999999999999999999999999999997 77899998 78887744   4455555


Q ss_pred             cc
Q 048564          109 HF  110 (114)
Q Consensus       109 Hl  110 (114)
                      .+
T Consensus        90 nL   91 (107)
T 1ycq_A           90 NL   91 (107)
T ss_dssp             TE
T ss_pred             hc
Confidence            44

>1z1m_A Ubiquitin-protein ligase E3 MDM2; peptide-binding groove, psudosymmetry, alpha-beta domains; NMR {Homo sapiens}

Probab=97.28  E-value=0.00031  Score=49.43  Aligned_cols=73  Identities=22%  Similarity=0.327  Sum_probs=57.2

Q ss_pred             CccCCHHHHhhh---C--CCccCHHHHHHHHHHHHHHhCCCCCCCCCccccc-hhHHhhhCCCCcccHH---HHHHHHhc
Q 048564           38 PVPVSAQLSKFL---G--ANEASRSDAVKKIWQYIRQHDLQNPANKREIRCD-DKLKTIFNGKDSVGFL---EIAKLLSQ  108 (114)
Q Consensus        38 ~~~lSp~La~fl---G--~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cD-ekLk~Lfg~~~~v~~~---el~~lL~~  108 (114)
                      .++-.++|-.+|   |  ....|+.||+..+-+||-.+.|.|+.+..+|.|. +.|-++|| +++|.+-   .+.+.|.+
T Consensus        27 ~VrPk~~LLkiLq~aGA~~~vfT~keV~~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g-~~~Fsvkdp~~l~~ml~~  105 (119)
T 1z1m_A           27 LVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFG-VPSFSVKEHRKIYTMIYR  105 (119)
T ss_dssp             CCCCSTTSHHHHHHHTCCCSCCCTTHHHHHHHHHHHTTTCSCSSSSCEECCTTSHHHHHSC-CSCEETTCHHHHHHHHSC
T ss_pred             cccccHHHHHHHHHhccccceeechheeehhhhhhhHhhhcccccCcEEeeCCcccccccC-ccceeecCcHHHHHHHHH
Confidence            445556666666   4  3678999999999999999999999999999997 77899998 7888774   44555544


Q ss_pred             ccc
Q 048564          109 HFV  111 (114)
Q Consensus       109 Hl~  111 (114)
                      .|+
T Consensus       106 nLv  108 (119)
T 1z1m_A          106 NLV  108 (119)
T ss_dssp             SCC
T ss_pred             hcc
Confidence            443

>2axi_A Ubiquitin-protein ligase E3 MDM2; drug design, protein-protein interactions, ligase, LIGA inhibitor complex; HET: 6CW MPO; 1.40A {Homo sapiens} SCOP: a.42.1.1 PDB: 1ycr_A 2gv2_A* 1t4f_M* 3jzr_A 3g03_A 3tu1_A* 3jzk_A* 1t4e_A* 3lbl_A* 4dij_A* 3lbk_A* 3v3b_A* 3jzs_A 3eqs_A 3iux_A* 3iwy_A* 3lnj_A* 3lnz_A 1rv1_A* 1ttv_A*

Probab=97.07  E-value=0.00036  Score=48.85  Aligned_cols=72  Identities=21%  Similarity=0.316  Sum_probs=58.1

Q ss_pred             CccCCHHHHhhh---C--CCccCHHHHHHHHHHHHHHhCCCCCCCCCccccc-hhHHhhhCCCCcccHH---HHHHHHhc
Q 048564           38 PVPVSAQLSKFL---G--ANEASRSDAVKKIWQYIRQHDLQNPANKREIRCD-DKLKTIFNGKDSVGFL---EIAKLLSQ  108 (114)
Q Consensus        38 ~~~lSp~La~fl---G--~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cD-ekLk~Lfg~~~~v~~~---el~~lL~~  108 (114)
                      .++-.++|-.+|   |  ....|+.+|+-.+-+||-.+.|.|+.+..+|.|. +.|-++|| +++|++-   .+.+.|.+
T Consensus        11 ~VrPk~~LLklLq~~GA~~~vfT~keVm~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g-~~~Fsvkdp~~l~~ml~~   89 (115)
T 2axi_A           11 LVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFG-VPSFSVKEHRKIYTMIYR   89 (115)
T ss_dssp             EEEECHHHHHHHHHTTCCCSCEEHHHHHHHHHHHHHHHTCEETTEEEEEECTTSHHHHHHS-SSEEETTCHHHHHHHHHT
T ss_pred             ccCccHHHHHHHHHhccccceeechhheehhhhhhhHhhhcccccCcEEeeCCcccccccC-ccceeecCcHHHHHHHHH
Confidence            455667777777   3  3678999999999999999999999999999997 77899998 7888774   45555554


Q ss_pred             cc
Q 048564          109 HF  110 (114)
Q Consensus       109 Hl  110 (114)
                      -|
T Consensus        90 nL   91 (115)
T 2axi_A           90 NL   91 (115)
T ss_dssp             TE
T ss_pred             hc
Confidence            44

>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}

Probab=86.08  E-value=1.2  Score=27.22  Aligned_cols=57  Identities=23%  Similarity=0.353  Sum_probs=43.9

Q ss_pred             CCCccCHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhccc
Q 048564           50 GANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHF  110 (114)
Q Consensus        50 G~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl  110 (114)
                      |...|++.++...|.+.|.+.-=.++   ..|..|..|..-+| -+++.+-++...|..+|
T Consensus         1 ~~~~m~~~~i~~~l~~~i~~~l~~~~---~~i~~~~~l~~dlG-~DSl~~vel~~~le~~f   57 (84)
T 2kwl_A            1 GPGSMDNDEIFSKVRSIISEQLDKKE---DEITTDSRFVEDLN-ADSLDIYELLYLLEEAF   57 (84)
T ss_dssp             CCCCSTHHHHHHHHHHHHHHHHCCCG---GGCCTTTHHHHTSS-SCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCCc---ccCCCCCchhhhcC-CCHHHHHHHHHHHHHHH
Confidence            45679999999999999988632332   46889999966676 58888888888887765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	114
d1uhra_	93	a.42.1.1 (A:) SWI/SNF related regulator of chromat	3e-32
d1v31a_	93	a.42.1.1 (A:) Hypothetical protein AT5G14170 (rafl	1e-31
d1v32a_	101	a.42.1.1 (A:) Hypothetical protein AT5G08430 (rafl	6e-26

>d1uhra_ a.42.1.1 (A:) SWI/SNF related regulator of chromatin (BRG1-associated factor 60a) {Mouse (Mus musculus) [TaxId: 10090]} Length = 93

class: All alpha proteins
fold: SWIB/MDM2 domain
superfamily: SWIB/MDM2 domain
family: SWIB/MDM2 domain
domain: SWI/SNF related regulator of chromatin (BRG1-associated factor 60a)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  106 bits (267), Expect = 3e-32
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)

Query: 28  GKKAKGGIGKPVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKL 87
           G     G      +  +L++ LG +  +R   ++ +WQYI+ H LQ+P  +  + CD  L
Sbjct: 1   GSSGSSGQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYL 60

Query: 88  KTIFNGKDSVGFLEIAKLLSQHFVK 112
           + IF     + F EI + L    + 
Sbjct: 61  QQIF-ESQRMKFSEIPQRLHALLMP 84

>d1v31a_ a.42.1.1 (A:) Hypothetical protein AT5G14170 (rafl11-05-p19) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 93

class: All alpha proteins
fold: SWIB/MDM2 domain
superfamily: SWIB/MDM2 domain
family: SWIB/MDM2 domain
domain: Hypothetical protein AT5G14170 (rafl11-05-p19)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  105 bits (263), Expect = 1e-31
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)

Query: 28  GKKAKGGIGKPVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKL 87
           G     G+ +   +S  L   LG    +R   +  IW Y++   LQNP +     CD  L
Sbjct: 1   GSSGSSGVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAAL 60

Query: 88  KTIFNGKDSVGFLEIAKLLSQHFVK 112
           + +F G++ + F  +++ +S H   
Sbjct: 61  QKVF-GEEKLKFTMVSQKISHHLSP 84

>d1v32a_ a.42.1.1 (A:) Hypothetical protein AT5G08430 (rafl09-47-k03) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101

class: All alpha proteins
fold: SWIB/MDM2 domain
superfamily: SWIB/MDM2 domain
family: SWIB/MDM2 domain
domain: Hypothetical protein AT5G08430 (rafl09-47-k03)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 91.0 bits (226), Expect = 6e-26
 Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 42  SAQLSKFLG------ANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKD 95
           S QL +FL       +   SR D    I +YI +  L +P+NK+++ CD +L  +F G  
Sbjct: 17  SRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLF-GTR 75

Query: 96  SVGFLEIAKLLSQHFVK 112
           ++  +++  LL +H+ +
Sbjct: 76  TIFRMKVYDLLEKHYKE 92

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	114
d1v31a_	93	Hypothetical protein AT5G14170 (rafl11-05-p19) {Th	99.97
d1uhra_	93	SWI/SNF related regulator of chromatin (BRG1-assoc	99.97
d1v32a_	101	Hypothetical protein AT5G08430 (rafl09-47-k03) {Th	99.94
d2axia1	85	MDM2 {Human (Homo sapiens) [TaxId: 9606]}	98.19
d1ttva_	107	MDM2 {African clawed frog (Xenopus laevis) [TaxId:	98.18

>d1v31a_ a.42.1.1 (A:) Hypothetical protein AT5G14170 (rafl11-05-p19) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: SWIB/MDM2 domain
superfamily: SWIB/MDM2 domain
family: SWIB/MDM2 domain
domain: Hypothetical protein AT5G14170 (rafl11-05-p19)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=5e-33  Score=188.17  Aligned_cols=84  Identities=24%  Similarity=0.559  Sum_probs=80.9

Q ss_pred             cCCCCCCCCCccCCHHHHhhhCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhc
Q 048564           29 KKAKGGIGKPVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQ  108 (114)
Q Consensus        29 ~k~~~g~~~~~~lSp~La~flG~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~  108 (114)
                      .+..+||+++|+|||+|++|+|.+++||++|++.||+|||+||||||+|++.|+||++|++||+ .++|.|++|+++|++
T Consensus         2 ~~~~~G~~~~~~lS~~La~~lg~~~~sR~~v~k~iw~YIk~n~Lqd~~nkr~I~~D~~L~~lfg-~~~v~~~~l~~~L~~   80 (93)
T d1v31a_           2 SSGSSGVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFG-EEKLKFTMVSQKISH   80 (93)
T ss_dssp             CSSCCSSCCCEECCHHHHHHSCCSEECSHHHHHHHHHHHHHTTCBCSSCSSEEECCSHHHHHSC-SSEEETTTTHHHHHH
T ss_pred             CCCCCCCcCCccCCHHHHHHHCcCcCcHHHHHHHHHHHHHHhCCCCCCCCCEEecCHHHHHHhC-CCcccHHHHHHHHHH
Confidence            5778999999999999999999999999999999999999999999999999999999999997 789999999999999


Q ss_pred             cccCC
Q 048564          109 HFVKS  113 (114)
Q Consensus       109 Hl~k~  113 (114)
                      ||.+.
T Consensus        81 Hl~p~   85 (93)
T d1v31a_          81 HLSPP   85 (93)
T ss_dssp             HCBCC
T ss_pred             hCCCC
Confidence            99863

>d1uhra_ a.42.1.1 (A:) SWI/SNF related regulator of chromatin (BRG1-associated factor 60a) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: SWIB/MDM2 domain
superfamily: SWIB/MDM2 domain
family: SWIB/MDM2 domain
domain: SWI/SNF related regulator of chromatin (BRG1-associated factor 60a)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=7.1e-33  Score=187.68  Aligned_cols=84  Identities=26%  Similarity=0.566  Sum_probs=80.5

Q ss_pred             cCCCCCCCCCccCCHHHHhhhCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhc
Q 048564           29 KKAKGGIGKPVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQ  108 (114)
Q Consensus        29 ~k~~~g~~~~~~lSp~La~flG~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~  108 (114)
                      +...+|+.++|+|||+|++|+|.+++||++|++.||+|||+||||||+|++.|+||+.|++||| ++++.|++|+++|++
T Consensus         2 ~~~~sg~p~~~~lS~~La~~lg~~~~sR~~v~k~iw~YIk~n~Lqdp~nkr~I~cD~~L~~lfg-~~~v~~~~l~~~L~~   80 (93)
T d1uhra_           2 SSGSSGQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFE-SQRMKFSEIPQRLHA   80 (93)
T ss_dssp             CCCCSSSCCEEEECTTHHHHTCCSEEEHHHHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHTC-CSSEEGGGSHHHHHH
T ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCCcCHHHHHHHHHHHHHHhcCCCCCCCCEEecCHHHHHHhC-CCeecHHHHHHHHHh
Confidence            4678899999999999999999999999999999999999999999999999999999999997 799999999999999


Q ss_pred             cccCC
Q 048564          109 HFVKS  113 (114)
Q Consensus       109 Hl~k~  113 (114)
                      ||.+.
T Consensus        81 Hl~p~   85 (93)
T d1uhra_          81 LLMPP   85 (93)
T ss_dssp             HEECS
T ss_pred             hCCCC
Confidence            99863

>d1v32a_ a.42.1.1 (A:) Hypothetical protein AT5G08430 (rafl09-47-k03) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: SWIB/MDM2 domain
superfamily: SWIB/MDM2 domain
family: SWIB/MDM2 domain
domain: Hypothetical protein AT5G08430 (rafl09-47-k03)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.94  E-value=4.5e-28  Score=166.24  Aligned_cols=73  Identities=30%  Similarity=0.504  Sum_probs=68.6

Q ss_pred             cCCHHHHhhhC---C---CccCHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhccccCC
Q 048564           40 PVSAQLSKFLG---A---NEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFVKS  113 (114)
Q Consensus        40 ~lSp~La~flG---~---~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl~k~  113 (114)
                      ..|++|++|||   .   +++||.||++.||+|||+||||||.|||.|+||++|++||| .++|++++|+++|++||.++
T Consensus        15 ~~S~eL~~FL~~~g~~~~~~~sR~eVtk~iw~YIK~nnLqdp~nkr~I~~D~~L~~Lfg-~~~v~~f~i~k~l~~H~~~~   93 (101)
T d1v32a_          15 WGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFG-TRTIFRMKVYDLLEKHYKEN   93 (101)
T ss_dssp             SSCHHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHTC-CSEEETTHHHHHHHHHSCSC
T ss_pred             cCCHHHHHHHHhcCCCCcccCCHHHHHHHHHHHHHHhcCCCCccCCEEccCHHHHHHhC-CCcccHHHHHHHHHHHcCCc
Confidence            38999999984   2   68999999999999999999999999999999999999997 78999999999999999875

>d2axia1 a.42.1.1 (A:25-109) MDM2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SWIB/MDM2 domain
superfamily: SWIB/MDM2 domain
family: SWIB/MDM2 domain
domain: MDM2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=4e-07  Score=59.19  Aligned_cols=72  Identities=24%  Similarity=0.353  Sum_probs=61.9

Q ss_pred             ccCCHHHHhhh---C--CCccCHHHHHHHHHHHHHHhCCCCCCCCCccccc-hhHHhhhCCCCcccHHH---HHHHHhcc
Q 048564           39 VPVSAQLSKFL---G--ANEASRSDAVKKIWQYIRQHDLQNPANKREIRCD-DKLKTIFNGKDSVGFLE---IAKLLSQH  109 (114)
Q Consensus        39 ~~lSp~La~fl---G--~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cD-ekLk~Lfg~~~~v~~~e---l~~lL~~H  109 (114)
                      ++..|+|-.+|   |  .+..|+.||+-.|-+||.+++|.||.+.++|.|- +.|-++|| .++++.-+   +.+.|.+|
T Consensus         4 VrPkp~Ll~~L~~~GA~~~~fT~kqVm~yLgqYIm~K~LyD~~~qhiV~C~~D~LG~l~g-v~sFsVk~~r~l~~ml~rn   82 (85)
T d2axia1           4 VRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFG-VPSFSVKEHRKIYTMIYRN   82 (85)
T ss_dssp             EEECHHHHHHHHHTTCCCSCEEHHHHHHHHHHHHHHHTCEETTEEEEEECTTSHHHHHHS-SSEEETTCHHHHHHHHHTT
T ss_pred             ccCcHHHHHHHHHcCCCcceeeHHHHHHHHHHHHHHHHhcCcccCceEecCCchHHhhcC-CCceeecCcHHHHHHHHhc
Confidence            45567888887   4  4789999999999999999999999999999995 77999998 78887754   88999888


Q ss_pred             cc
Q 048564          110 FV  111 (114)
Q Consensus       110 l~  111 (114)
                      |+
T Consensus        83 Lv   84 (85)
T d2axia1          83 LV   84 (85)
T ss_dssp             EE
T ss_pred             cc
Confidence            74

>d1ttva_ a.42.1.1 (A:) MDM2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All alpha proteins
fold: SWIB/MDM2 domain
superfamily: SWIB/MDM2 domain
family: SWIB/MDM2 domain
domain: MDM2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=98.18  E-value=2.1e-06  Score=57.77  Aligned_cols=76  Identities=21%  Similarity=0.363  Sum_probs=64.7

Q ss_pred             CCCccCCHHHHhhh---C--CCccCHHHHHHHHHHHHHHhCCCCCCCCCccccc-hhHHhhhCCCCcccHH---HHHHHH
Q 048564           36 GKPVPVSAQLSKFL---G--ANEASRSDAVKKIWQYIRQHDLQNPANKREIRCD-DKLKTIFNGKDSVGFL---EIAKLL  106 (114)
Q Consensus        36 ~~~~~lSp~La~fl---G--~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cD-ekLk~Lfg~~~~v~~~---el~~lL  106 (114)
                      ...++..|.|-.+|   |  .+..|+.||+-.|-+||..++|.|+.+.++|.|- +.|-++|| .++++.-   .+.+.|
T Consensus         9 ~~lVrPkp~LL~~L~~~GA~~~~fT~keVm~yLgqYIm~K~LyD~~~qhiV~C~~D~LG~llg-v~sFsVke~r~l~~ml   87 (107)
T d1ttva_           9 EKLVQPTPLLLSLLKSAGAQKETFTMKEVLYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELFG-VQEFSVKEHRRIYAMI   87 (107)
T ss_dssp             CCCEEECHHHHHHHHHTTCCSSCBCHHHHHHHHHHHHHHHTCBCSSCTTEECCSSCHHHHHHT-CSCEETTCHHHHHHHH
T ss_pred             ccccCCCHHHHHHHHHcCCCcceeeHHHHHHHHHHHHHHHHhcCcccCceEecCCchHHhhcC-CCceeecCcHHHHHHH
Confidence            34567778888888   4  3789999999999999999999999999999995 77999998 7888764   478889


Q ss_pred             hccccC
Q 048564          107 SQHFVK  112 (114)
Q Consensus       107 ~~Hl~k  112 (114)
                      .+|++.
T Consensus        88 ~rnLv~   93 (107)
T d1ttva_          88 SRNLVS   93 (107)
T ss_dssp             HTTEEE
T ss_pred             Hhhhhc
Confidence            998863