Citrus Sinensis ID: 048569

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390----
Protein Sequence
MADSASQLQTQIEIKQSHQEKELANLPIITFPETQGQEYHKAKAPFFKSRGRKRGTDTWVISVFVILHVVAFAATMAVNDCWRNSHGNCALKMLGRLSFQPISENPLLGPSASTLDQMGALRQTFLKEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNFSSIGGFISGFLLGFTLLFTPQTRIVAHSKAGIFEHNVKSSINFKLKLDRPIMRSVSLLLFVLVILGFLAAVLQGLNISQYCKWCKYIDCVPSKRWSCNDITTNCETIVSNSQLTMTCMGHGNFRVFPYTNISQARMKDLCTLLCS
Secondary Structure (PSIPRED)
cccccccccHHHHHcccHHHHHccccccccccccccccccccccccccccccccccccEEHHHHHHHHHHHEEEEEEEccccccccccccEEccccEEEccccccccccccHHHHHHccccccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccEEccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHccccccccccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEcccccccccccccEEEEEccccEEEEEccccEEEEEEcccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccEEHHHccccccccccccccccccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHEEEEEEHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHHHHHHHHHcccccccEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEccccccccccccEEEEEEEcccEEEEEEEccccEEEEEcccccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MADSASQLQTQIEIKQSHqekelanlpiitfpetqgqeyhkakapffksrgrkrgtdtWVISVFVILHVVAFAATMAVndcwrnshgncaLKMLgrlsfqpisenpllgpsastLDQMGALRQTFLKEYHhtwrlftcpwlhaGFIHLILNLGCIVLVGIHlekefgpvRIGIIYIFSAFVGSLAAALFvqnspvvcasgsLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIgllpyidnfssiggfISGFLLGftllftpqtrivahskagifehnvkssinfklkldrpimRSVSLLLFVLVILGFLAAVLQGLNisqyckwckyidcvpskrwscndittncetIVSNSQLTMTCmghgnfrvfpytnisqaRMKDLCTLLCS
Flexible Loop (DISEMBL)
madsasqlQTQIEIKQSHQEKELANLPIITFPETQGQEYHKAKapffksrgrkrgTDTWVISVFVILHVVAFAATMAVNDCWRNSHGNCALKMLGRLSFQPISENPLLGPSASTLDQMGALRQTFLKEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNFSSIGGFISGFLLGFTLLFTPQTRIVAHSKagifehnvkssINFKLKLDRPIMRSVSLLLFVLVILGFLAAVLQGLNISQYCKWCKYIDCVPSKRWSCNDITTNCETIVSNSQLTMTCMGHGNFRVFPYTNISQARMKDLCTLLCS
Low Complexity Region (SEG)
MADSASQLQTQIEIKQSHQEKELANLPIITFPETQGQEYHKAKAPFFKSRGRKRGTDTWVISVFVILHVVAFAATMAVNDCWRNSHGNCALKMLGRLSFQPISENPLLGPSASTLDQMGALRQTFLKEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNfssiggfisgfllgftllftPQTRIVAHSKAGIFEHNVKSSINFKLKLDRPIMRsvslllfvlvilgflaavlQGLNISQYCKWCKYIDCVPSKRWSCNDITTNCETIVSNSQLTMTCMGHGNFRVFPYTNISQARMKDLCTLLCS
Disordered region (IsUnstruct)
***************************II****************************TWVISVFVILHVVAFAATMAVNDCWRNSHGNCALKMLGRLSFQPISENPLL*****TLDQMGALRQTFLKEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNFSSIGGFISGFLLGFTLLFTPQTRIVAHSKAGIFEHNVKSSINFKLKLDRPIMRSVSLLLFVLVILGFLAAVLQGLNISQYCKWCKYIDCVPSKRWSCNDITTNCETIVSNSQLTMTCMGHGNFRVFPYTNISQARMKDLCTLLC*
Disordered Region (DISOPRED)
********************************************************DTWVISVFVILHVVAFAATMAVNDCWRNSHGNCALKMLGRLSFQPISENPLLGPSASTLDQMGALRQTFLKEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNFSSIGGFISGFLLGFTLLFTPQTRIVAHSKAGIFEHNVKSSINFKLKLDRPIMRSVSLLLFVLVILGFLAAVLQGLNISQYCKWCKYIDCVPSKRWSCNDITTNCETIVSNSQLTMTCMGHGNFRVFPYTNISQARMKDLCTLLCS
Disordered Region (DISEMBL)
***********IEIKQSHQEKELANLPIITFPETQGQEYHKAKAPFFKSRGRKRGTDTWVISVFVILHVVAFAATMAVNDCWRNSHGNCALKMLGRLSFQPISENPLLGPSASTLDQMGALRQTFLKEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNFSSIGGFISGFLLGFTLLFTPQTRIVAHSKAGIFEHNVKSSINFKLKLDRPIMRSVSLLLFVLVILGFLAAVLQGLNISQYCKWCKYIDCVPSKRWSCNDITTNCETIVSNSQLTMTCMGHGNFRVFPYTNISQARMKDLCTLLCS
Disordered Region (DISPRO)
***********IEIK***Q**ELA*LPI***************AP******RKRGTDTWVISVFVILHVVAFAATMAVNDCWRNSHGNCALKMLGRLSFQPISENPLLGPSASTLDQMGALRQTFLKEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNFSSIGGFISGFLLGFTLLFTPQTRIVAHSKAGIFEHNVKSSINFKLKLDRPIMRSVSLLLFVLVILGFLAAVLQGLNISQYCKWCKYIDCVPSKRWSCNDITTNCETIVSNSQLTMTCMGHGNFRVFPYTNISQARMKDLCTLLCS
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADSASQLQTQIEIKQSHQEKELANLPIITFPETQGQEYHKAKAPFFKSRGRKRGTDTWVISVFVILHVVAFAATMAVNDCWRNSHGNCALKMLGRLSFQPISENPLLGPSASTLDQMGALRQTFLKEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNFSSIGGFISGFLLGFTLLFTPQTRIVAHSKAGIFEHNVKSSINFKLKLDRPIMRSVSLLLFVLVILGFLAAVLQGLNISQYCKWCKYIDCVPSKRWSCNDITTNCETIVSNSQLTMTCMGHGNFRVFPYTNISQARMKDLCTLLCS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	394	2.2.26 [Sep-21-2011]
Q6GMF8	857	Inactive rhomboid protein	yes	no	0.467	0.214	0.328	3e-22
Q695T8	641	Rhomboid-like protease 4	N/A	no	0.401	0.246	0.295	5e-18
Q96CC6	855	Inactive rhomboid protein	yes	no	0.467	0.215	0.323	5e-18
B0VX73	855	Inactive rhomboid protein	yes	no	0.467	0.215	0.323	6e-18
Q6PIX5	856	Inactive rhomboid protein	yes	no	0.467	0.214	0.323	8e-18
Q499S9	856	Inactive rhomboid protein	yes	no	0.340	0.156	0.388	1e-17
A7YWH9	856	Inactive rhomboid protein	yes	no	0.467	0.214	0.328	1e-17
A9L8T6	855	Inactive rhomboid protein	N/A	no	0.467	0.215	0.323	1e-17
B1MT31	855	Inactive rhomboid protein	N/A	no	0.467	0.215	0.323	2e-17
C8VCL5	503	Uncharacterized rhomboid	yes	no	0.553	0.433	0.284	5e-17

>sp|Q6GMF8|RHDF1_DANRE Inactive rhomboid protein 1 OS=Danio rerio GN=rhbdf1 PE=2 SV=1

 Score =  106 bits (265), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 108/210 (51%), Gaps = 26/210 (12%)

Query: 133 WRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQN 192
           +RL+   +LHAG +H ++++   + +   LEK  G +RI IIYI S   G+LA+A+F+  
Sbjct: 656 YRLWLSLFLHAGILHCLVSVCFQMTILRDLEKLAGWLRISIIYILSGITGNLASAIFLPY 715

Query: 193 SPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNFSSI 252
              V  +GS FG+L  +   LI++W      + A   L  V    FA GLLP+IDNF+ I
Sbjct: 716 RAEVGPAGSQFGILACLFVELIQSWQILAQPWRAFTKLLCVVLFLFAFGLLPWIDNFAHI 775

Query: 253 GGFISGFLLGFTLLFTPQTRIVAHSKAGIFEHNVKSSINF-KLKLDRPIMRSVSLLLFVL 311
            GFISGF L F  L                       I+F +L + R   +   +++F++
Sbjct: 776 SGFISGFFLSFAFL---------------------PYISFGRLDMYR---KRCQIIIFLV 811

Query: 312 VILGFLAAVLQGLNISQ-YCKWCKYIDCVP 340
           V LG  A ++    +    C+WC+ + C+P
Sbjct: 812 VFLGLFAGLVVLFYVHPIKCEWCELLTCIP 841

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.
Danio rerio (taxid: 7955)

>sp|Q695T8|RHBL4_TOXGO Rhomboid-like protease 4 OS=Toxoplasma gondii GN=ROM4 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 88/159 (55%), Gaps = 1/159 (0%)

Query: 110 PSASTLDQMGALRQTFLKEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPV 169
           P+A  L  +G L   +++EY  T+RLFT  ++H G++H+++NL C + +   +E ++G +
Sbjct: 320 PNARVLRHLGGLETNYIREYSETFRLFTSMYMHGGWLHILINLSCQIQILWIIEPDWGFL 379

Query: 170 RIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVL 229
           R  +++      G+L +A+    S  V +SGS++ LLGA++   +  W     +   I++
Sbjct: 380 RTTLLFFLGGISGNLLSAVADPCSITVGSSGSMYALLGALIPYCVEYWK-SIPRPGCILV 438

Query: 230 LFFVSTINFAIGLLPYIDNFSSIGGFISGFLLGFTLLFT 268
              V  I    G+  + DN++ +GG + G L GF  + T
Sbjct: 439 FMIVVIIGILTGMAGFTDNYAHMGGALGGILWGFASITT 477

Putative serine protease involved in intramembrane proteolysis and the subsequent release of polypeptides from their membrane anchors.

Toxoplasma gondii (taxid: 5811)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|Q96CC6|RHDF1_HUMAN Inactive rhomboid protein 1 OS=Homo sapiens GN=RHBDF1 PE=1 SV=2

 Score = 92.4 bits (228), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 104/210 (49%), Gaps = 26/210 (12%)

Query: 133 WRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQN 192
           +RL+   +LHAG +H ++++   + V   LEK  G  RI IIY+ S   G+LA+A+F+  
Sbjct: 654 YRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLPY 713

Query: 193 SPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNFSSI 252
              V  +GS FG+L  +   L ++W      + A   L  V    F  GLLP+IDNF+ I
Sbjct: 714 RAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHI 773

Query: 253 GGFISGFLLGFTLLFTPQTRIVAHSKAGIFEHNVKSSINF-KLKLDRPIMRSVSLLLFVL 311
            GFISG  L F  L                       I+F K  L R   +   +++F +
Sbjct: 774 SGFISGLFLSFAFL---------------------PYISFGKFDLYR---KRCQIIIFQV 809

Query: 312 VILGFLAAVLQGLNISQ-YCKWCKYIDCVP 340
           V LG LA ++    +    C+WC+++ C+P
Sbjct: 810 VFLGLLAGLVVLFYVYPVRCEWCEFLTCIP 839

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Homo sapiens (taxid: 9606)

>sp|B0VX73|RHDF1_CALJA Inactive rhomboid protein 1 OS=Callithrix jacchus GN=RHBDF1 PE=3 SV=1

 Score = 92.0 bits (227), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 104/210 (49%), Gaps = 26/210 (12%)

Query: 133 WRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQN 192
           +RL+   +LHAG +H ++++   + V   LEK  G  RI IIY+ S   G+LA+A+F+  
Sbjct: 654 YRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLPY 713

Query: 193 SPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNFSSI 252
              V  +GS FG+L  +   L ++W      + A   L  V    F  GLLP+IDNF+ I
Sbjct: 714 RAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHI 773

Query: 253 GGFISGFLLGFTLLFTPQTRIVAHSKAGIFEHNVKSSINF-KLKLDRPIMRSVSLLLFVL 311
            GFISG  L F  L                       I+F K  L R   +   +++F +
Sbjct: 774 SGFISGLFLSFAFL---------------------PYISFGKFDLYR---KRCQIIVFQV 809

Query: 312 VILGFLAAVLQGLNISQ-YCKWCKYIDCVP 340
           V LG LA ++    +    C+WC+++ C+P
Sbjct: 810 VFLGLLAGLVVLFYVYPVRCEWCEFLTCIP 839

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Callithrix jacchus (taxid: 9483)

>sp|Q6PIX5|RHDF1_MOUSE Inactive rhomboid protein 1 OS=Mus musculus GN=Rhbdf1 PE=1 SV=2

 Score = 91.7 bits (226), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 104/210 (49%), Gaps = 26/210 (12%)

Query: 133 WRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQN 192
           +RL+   +LHAG +H ++++   + V   LEK  G  RI IIY+ S   G+LA+A+F+  
Sbjct: 655 YRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGITGNLASAIFLPY 714

Query: 193 SPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNFSSI 252
              V  +GS FG+L  +   L ++W      + A   L  V    FA GLLP+IDNF+ I
Sbjct: 715 RAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFAFGLLPWIDNFAHI 774

Query: 253 GGFISGFLLGFTLLFTPQTRIVAHSKAGIFEHNVKSSINF-KLKLDRPIMRSVSLLLFVL 311
            GF+SG  L F  L                       I+F K  L R   +   +++F +
Sbjct: 775 SGFVSGLFLSFAFL---------------------PYISFGKFDLYR---KRCQIIIFQV 810

Query: 312 VILGFLAAVLQGLNISQ-YCKWCKYIDCVP 340
           V LG LA ++         C+WC+++ C+P
Sbjct: 811 VFLGLLAGLVVLFYFYPVRCEWCEFLTCIP 840

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Mus musculus (taxid: 10090)

>sp|Q499S9|RHDF1_RAT Inactive rhomboid protein 1 OS=Rattus norvegicus GN=Rhbdf1 PE=2 SV=1

 Score = 91.3 bits (225), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/134 (38%), Positives = 75/134 (55%)

Query: 133 WRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQN 192
           +RL+   +LHAG +H ++++   + V   LEK  G  RI IIY+ S   G+LA+A+F+  
Sbjct: 655 YRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLPY 714

Query: 193 SPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNFSSI 252
              V  +GS FG+L  +   L ++W      + A   L  V    FA GLLP+IDNF+ I
Sbjct: 715 RAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFAFGLLPWIDNFAHI 774

Query: 253 GGFISGFLLGFTLL 266
            GF+SG  L F  L
Sbjct: 775 SGFVSGLFLSFAFL 788

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Rattus norvegicus (taxid: 10116)

>sp|A7YWH9|RHDF1_BOVIN Inactive rhomboid protein 1 OS=Bos taurus GN=RHBDF1 PE=2 SV=1

 Score = 91.3 bits (225), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 103/210 (49%), Gaps = 26/210 (12%)

Query: 133 WRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQN 192
           +RL+   +LHAG +H ++++   + V   LEK  G  RI IIY+ S   G+LA+A+F+  
Sbjct: 655 YRLWLSLFLHAGVLHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLPY 714

Query: 193 SPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNFSSI 252
              V  +GS FG+L  +   L ++W      + A   L  V    F  GLLP+IDNF+ I
Sbjct: 715 RAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHI 774

Query: 253 GGFISGFLLGFTLLFTPQTRIVAHSKAGIFEHNVKSSINF-KLKLDRPIMRSVSLLLFVL 311
            GFISG  L F  L                       I+F K  L R   +   +++F L
Sbjct: 775 SGFISGLFLSFAFL---------------------PYISFGKFDLYR---KRCQIIVFQL 810

Query: 312 VILGFLAAVLQGLNISQ-YCKWCKYIDCVP 340
           V LG LA ++         C+WC+++ C+P
Sbjct: 811 VFLGLLAGLVVLFYFYPVRCEWCEFLTCIP 840

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Bos taurus (taxid: 9913)

>sp|A9L8T6|RHDF1_PAPAN Inactive rhomboid protein 1 OS=Papio anubis GN=RHBDF1 PE=3 SV=1

 Score = 90.9 bits (224), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 103/210 (49%), Gaps = 26/210 (12%)

Query: 133 WRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQN 192
           +RL+   +LHAG +H ++++   + V   LEK  G  RI IIY+ S   G+LA+A+F+  
Sbjct: 654 YRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLPY 713

Query: 193 SPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNFSSI 252
              V  +GS FG+L  +   L ++W      + A   L  V    F  GLLP+IDNF+ I
Sbjct: 714 RAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHI 773

Query: 253 GGFISGFLLGFTLLFTPQTRIVAHSKAGIFEHNVKSSINF-KLKLDRPIMRSVSLLLFVL 311
            GFISG  L F  L                       I+F K  L R   +   +++F +
Sbjct: 774 SGFISGLFLSFAFL---------------------PYISFGKFDLYR---KRCQIIIFQV 809

Query: 312 VILGFLAAVLQGLNISQ-YCKWCKYIDCVP 340
           V LG LA ++         C+WC+++ C+P
Sbjct: 810 VFLGLLAGLVVLFYFYPVRCEWCEFLTCIP 839

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Papio anubis (taxid: 9555)

>sp|B1MT31|RHDF1_CALMO Inactive rhomboid protein 1 OS=Callicebus moloch GN=RHBDF1 PE=3 SV=1

 Score = 90.9 bits (224), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 103/210 (49%), Gaps = 26/210 (12%)

Query: 133 WRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQN 192
           +RL+   +LHAG +H ++++   + V   LEK  G  RI IIY+ S   G+LA+A+F+  
Sbjct: 654 YRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLPY 713

Query: 193 SPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNFSSI 252
              V  +GS FG+L  +   L ++W      + A   L  V    F  GLLP+IDNF+ I
Sbjct: 714 RAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHI 773

Query: 253 GGFISGFLLGFTLLFTPQTRIVAHSKAGIFEHNVKSSINF-KLKLDRPIMRSVSLLLFVL 311
            GFISG  L F  L                       I+F K  L R   +   +++F +
Sbjct: 774 SGFISGLFLSFAFL---------------------PYISFGKFDLYR---KRCQIIVFQV 809

Query: 312 VILGFLAAVLQGLNISQ-YCKWCKYIDCVP 340
           V LG LA ++         C+WC+++ C+P
Sbjct: 810 VFLGLLAGLVVLFYFYPVRCEWCEFLTCIP 839

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Callicebus moloch (taxid: 9523)

>sp|C8VCL5|Y0929_EMENI Uncharacterized rhomboid protein AN10929 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=AN10929 PE=3 SV=1

 Score = 89.0 bits (219), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 110/250 (44%), Gaps = 32/250 (12%)

Query: 127 KEYHHTWRLFTCP-WLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLA 185
           K     W  F  P +LH+GF+H+  NL   + +G  +E+  G  R G++Y+ S   G + 
Sbjct: 245 KPAPDQWFRFIIPMFLHSGFVHIGFNLLVQMTMGADMERMIGWWRYGLVYLSSGIWGFVL 304

Query: 186 AALFVQNSPVVCA-SGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLP 244
              +       C  SG+LFG+L   +  L+  WN   + +  ++++     ++F +GLLP
Sbjct: 305 GGNYAGQGEASCGCSGALFGILALFVLDLLYGWNDRQNPWVELIIMVLGIAVSFVLGLLP 364

Query: 245 YIDNFSSIGGFISGFLLGFTLLFTP---QTRI-------------VAHSKAGIFEHNVKS 288
            +DNFS +GGF  G  LG  ++ +P   + RI             VA   A   ++   +
Sbjct: 365 GLDNFSHLGGFTMGLALGLCVMRSPNALRERIGLARSPYVAMSGGVAAENADPDQNKTST 424

Query: 289 SINF-KLKLDRP----IMRSVSLLLFVLVILGFLAAVLQG-----LNISQY----CKWCK 334
             N   L    P      R      + LV LG L AVL G     +N  +Y    C WC 
Sbjct: 425 GSNIGGLGKFNPKGFFAGRKPLWWAWWLVRLGALVAVLIGFILLIVNFYKYPSSNCSWCY 484

Query: 335 YIDCVPSKRW 344
              C+P   W
Sbjct: 485 RFSCLPVNGW 494

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	394
359492423	379	PREDICTED: uncharacterized rhomboid prot	0.954	0.992	0.603	1e-133
255545576	389	KOM, putative [Ricinus communis] gi|2235	0.984	0.997	0.587	1e-132
356518507	373	PREDICTED: inactive rhomboid protein 1-l	0.855	0.903	0.619	1e-124
356507686	368	PREDICTED: inactive rhomboid protein 1-l	0.890	0.953	0.603	1e-122
332148745	385	Rhomboid family KOMPEITO [Arabidopsis th	0.974	0.997	0.510	1e-119
302141893	342	unnamed protein product [Vitis vinifera]	0.855	0.985	0.608	1e-118
147766525	448	hypothetical protein VITISV_039487 [Viti	0.862	0.758	0.561	1e-112
449522305	380	PREDICTED: inactive rhomboid protein 1-l	0.870	0.902	0.540	1e-107
357461731	332	Rhomboid family member [Medicago truncat	0.835	0.990	0.595	1e-106
297842567	351	predicted protein [Arabidopsis lyrata su	0.873	0.980	0.5	1e-101

>gi|359492423|ref|XP_002284303.2| PREDICTED: uncharacterized rhomboid protein AN10929-like [Vitis vinifera]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 233/386 (60%), Positives = 295/386 (76%), Gaps = 10/386 (2%)

Query: 9   QTQIEIKQSHQEKELANLPIITFPETQGQEYHKAKAPFFKSRGRKRGTDTWVISVFVILH 68
           QTQIEIK                 +    +  + +  FFKS  RKR  D+WVIS+FV+LH
Sbjct: 4   QTQIEIKPPQPAHH---------SDAGDDQVLEQQVRFFKSGTRKR-EDSWVISLFVVLH 53

Query: 69  VVAFAATMAVNDCWRNSHGNCALKMLGRLSFQPISENPLLGPSASTLDQMGALRQTFLKE 128
           +VAFAATM VNDCW+NSH +CA+K+LGRLSFQP+ ENPLLGPS+STLD+MGAL+QTFL  
Sbjct: 54  IVAFAATMFVNDCWQNSHRDCAIKVLGRLSFQPLWENPLLGPSSSTLDEMGALQQTFLAN 113

Query: 129 YHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAAL 188
           +H TWRLFTC WLHAG IHLI+NL  ++ VGIHLE+EFGP+RIG++YI SAF GSL A L
Sbjct: 114 HHQTWRLFTCLWLHAGAIHLIINLSSVIFVGIHLEQEFGPLRIGMVYILSAFFGSLVATL 173

Query: 189 FVQNSPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDN 248
           F+Q SP V +SG+LFGLLG+MLSGLI NW  YTDK AA+  L  V+ INFA+GLLPY+DN
Sbjct: 174 FLQKSPAVGSSGALFGLLGSMLSGLICNWKVYTDKLAALSALLLVAVINFALGLLPYVDN 233

Query: 249 FSSIGGFISGFLLGFTLLFTPQTRIVAHSKAGIFEHNVKSSINFKLKLDRPIMRSVSLLL 308
           FS++GGFISG LLGF LLF+P+   +A  K G F+++VK SI  K KLDRP++RSVS +L
Sbjct: 234 FSNLGGFISGVLLGFVLLFSPRLPRMAEKKGGFFDYSVKKSIRLKQKLDRPVLRSVSFVL 293

Query: 309 FVLVILGFLAAVLQGLNISQYCKWCKYIDCVPSKRWSCNDITTNCETIVSNSQLTMTCMG 368
           F LV+ G + AVL G+++++YC WC+YI+CVPS RWSCN   T C+T+ +  +LT+TCMG
Sbjct: 294 FGLVLAGAIVAVLHGIDMNKYCSWCQYINCVPSNRWSCNTKVTACQTMENAGRLTVTCMG 353

Query: 369 HGNFRVFPYTNISQARMKDLCTLLCS 394
             NFRVFP+T+ S+ R+ DLC L+CS
Sbjct: 354 KDNFRVFPFTSFSETRLHDLCDLICS 379

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545576|ref|XP_002513848.1| KOM, putative [Ricinus communis] gi|223546934|gb|EEF48431.1| KOM, putative [Ricinus communis]

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 231/393 (58%), Positives = 303/393 (77%), Gaps = 5/393 (1%)

Query: 1   MADSASQLQTQIEIKQSHQEKELANLPIITFPETQGQEYHKAKAPFFKSRGRKRGTDTWV 60
           M     +L ++IEI  S   K + N    +F +         K PFFKSR R+   DTW+
Sbjct: 1   MEVETPKLDSKIEINLSDNNKNI-NQTFSSFSDFADSLQDPNKTPFFKSRRRR---DTWL 56

Query: 61  ISVFVILHVVAFAATMAVNDCWRNSHGNCALKMLGRLSFQPISENPLLGPSASTLDQMGA 120
           IS+FVI+H+ AF ATM VNDC  NS+G+CA+K LGRLSFQP+SENPLLGPSASTLD+MGA
Sbjct: 57  ISIFVIIHLGAFIATMIVNDCSTNSYGDCAIKTLGRLSFQPLSENPLLGPSASTLDKMGA 116

Query: 121 LRQTFLKEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAF 180
           LR+T + E H TWRLF+CPWLHAG IHLI++L  ++ +GI+LE+EFGP+R+GIIYI SAF
Sbjct: 117 LRRTLVIE-HQTWRLFSCPWLHAGLIHLIIDLIGVIFLGIYLEQEFGPLRVGIIYILSAF 175

Query: 181 VGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAI 240
            GSL  ALFV++SPVV +SG+  GLLGA  S L+RNW  +T+K AA+++ FFV   N  +
Sbjct: 176 FGSLVTALFVRDSPVVSSSGAQLGLLGATFSALVRNWKSHTNKVAAVLIHFFVFACNVML 235

Query: 241 GLLPYIDNFSSIGGFISGFLLGFTLLFTPQTRIVAHSKAGIFEHNVKSSINFKLKLDRPI 300
           GLLPY DN+S+IGG ISGFLLGF LL+TPQ R +A  K+G+++  +KS +N K KLDRP+
Sbjct: 236 GLLPYADNYSNIGGLISGFLLGFVLLYTPQLRKLAPKKSGLYDDGLKSVLNLKQKLDRPV 295

Query: 301 MRSVSLLLFVLVILGFLAAVLQGLNISQYCKWCKYIDCVPSKRWSCNDITTNCETIVSNS 360
           +R+VSLLLF ++++GFL A LQG+NIS YCKWC Y DC+PSK WSCND+TT+CE + S++
Sbjct: 296 LRTVSLLLFSVLLVGFLVAALQGINISHYCKWCGYFDCIPSKSWSCNDVTTSCEIMSSDA 355

Query: 361 QLTMTCMGHGNFRVFPYTNISQARMKDLCTLLC 393
           +LT+TCM +GNF+V P+ N+S+AR +DLCTL+C
Sbjct: 356 ELTLTCMSNGNFKVLPFANMSEARTRDLCTLIC 388

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518507|ref|XP_003527920.1| PREDICTED: inactive rhomboid protein 1-like [Glycine max]

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 210/339 (61%), Positives = 262/339 (77%), Gaps = 2/339 (0%)

Query: 57  DTWVISVFVILHVVAFAATMAVNDCWRNSHGNCALKMLGRLSFQPISENPLLGPSASTLD 116
           DTWV+SVFVI+ +  F ATM VNDCW NSHG+C L+ LGR SFQP+ ENPLLGPS S LD
Sbjct: 35  DTWVVSVFVIIQIGVFIATMLVNDCWNNSHGDCVLQALGRFSFQPLPENPLLGPSQSKLD 94

Query: 117 QMGALRQTFLKEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYI 176
           +MGALR++ L E+H TWRLFT P+LHAG  HL+LNL  ++ VG+ LE  FGP+RIGIIY 
Sbjct: 95  EMGALRRSLLTEHHQTWRLFTFPFLHAGVFHLLLNLSSVIYVGVSLEHHFGPIRIGIIYA 154

Query: 177 FSAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTI 236
            SAFVGSL A+LF+QN P V ASG+L+GLLG +LS L+ NW F+++K +AI  L FV   
Sbjct: 155 LSAFVGSLVASLFLQNMPAVGASGALYGLLGTLLSELVWNWKFHSNKISAIASLVFVFVC 214

Query: 237 NFAIGLLPYIDNFSSIGGFISGFLLGFTLLFTPQTRIVAHSKAGIFEHNVKSSINFKL-- 294
           NF +G LPY+DNF+SIGGFISGFLLG   L +PQ + VA +K G+ ++ VKS I  KL  
Sbjct: 215 NFVLGFLPYVDNFASIGGFISGFLLGSVFLLSPQLQPVAPNKGGLIDYGVKSCIKLKLKQ 274

Query: 295 KLDRPIMRSVSLLLFVLVILGFLAAVLQGLNISQYCKWCKYIDCVPSKRWSCNDITTNCE 354
           KLDRP++R VSL+LF L++ G L AVL G+NI+ YC WC Y+DC+P   W C D  T+CE
Sbjct: 275 KLDRPVLRIVSLILFSLLLAGCLVAVLHGININSYCTWCPYVDCIPFTSWHCKDTETSCE 334

Query: 355 TIVSNSQLTMTCMGHGNFRVFPYTNISQARMKDLCTLLC 393
           T+VSN+QLTMTC+G+GNFRVFP+TNIS+AR  DLC L+C
Sbjct: 335 TMVSNAQLTMTCIGNGNFRVFPFTNISRARFNDLCNLIC 373

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507686|ref|XP_003522595.1| PREDICTED: inactive rhomboid protein 1-like [Glycine max]

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 213/353 (60%), Positives = 267/353 (75%), Gaps = 2/353 (0%)

Query: 43  KAPFFKSRGRKRGTDTWVISVFVILHVVAFAATMAVNDCWRNSHGNCALKMLGRLSFQPI 102
           + P  +SR  +R  DTWV+SVFVI+ +  F ATM VNDCW NSHG+C L+ LGR SFQP+
Sbjct: 16  RIPLMRSRRGRRRGDTWVVSVFVIIQIGVFIATMLVNDCWNNSHGDCVLQPLGRFSFQPL 75

Query: 103 SENPLLGPSASTLDQMGALRQTFLKEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHL 162
            ENPLLGPS S LD+MGALR   L E+H TWRLFT P+LHAG  HL+LNL  ++ VG++L
Sbjct: 76  PENPLLGPSQSKLDEMGALRWNLLTEHHQTWRLFTFPFLHAGLFHLLLNLSSVIYVGVNL 135

Query: 163 EKEFGPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLIRNWNFYTD 222
           E  FGP+RIGIIY  SAFVGSL A+LF+QN P V ASG+L+GLLG +LS L+ NW F+++
Sbjct: 136 EHHFGPIRIGIIYALSAFVGSLVASLFLQNIPAVGASGALYGLLGTLLSELVWNWKFHSN 195

Query: 223 KFAAIVLLFFVSTINFAIGLLPYIDNFSSIGGFISGFLLGFTLLFTPQTRIVAHSKAGIF 282
           K +AI  L FV   NF +G LPY+DNF+S+GGFISGFLLG   L  PQ + VA +K G+ 
Sbjct: 196 KISAIASLVFVFVCNFVLGFLPYVDNFASMGGFISGFLLGSVFLLCPQIQPVAPNKGGLI 255

Query: 283 EHNVKSSINFKL--KLDRPIMRSVSLLLFVLVILGFLAAVLQGLNISQYCKWCKYIDCVP 340
           ++ VKS +  KL  KLDRP++R VSL+LF L++ G L AVL G+NIS YC WC Y+DC+P
Sbjct: 256 DYGVKSYVKLKLKEKLDRPVLRIVSLILFSLLLAGCLVAVLHGINISSYCTWCPYVDCIP 315

Query: 341 SKRWSCNDITTNCETIVSNSQLTMTCMGHGNFRVFPYTNISQARMKDLCTLLC 393
              W C D  T+CET+VSN+QLTMTC+G+GNFRVFP+TNIS+AR  DLC L+C
Sbjct: 316 FTSWHCKDTETSCETMVSNAQLTMTCIGNGNFRVFPFTNISRARFNDLCNLIC 368

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|332148745|dbj|BAK20219.1| Rhomboid family KOMPEITO [Arabidopsis thaliana]

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 198/388 (51%), Positives = 277/388 (71%), Gaps = 4/388 (1%)

Query: 8   LQTQIEIKQSHQEKELANLPIITFPETQGQEYHKAKAPFFKSRGRKRGTDTWVISVFVIL 67
           ++   E K +  ++   NL   +F  +   +    K  FF+ R R+   DTW++SVFV+L
Sbjct: 1   MEVPTESKTTQIDEISHNL---SFTTSNAGDSSWDKISFFRHRSRQIKRDTWLVSVFVLL 57

Query: 68  HVVAFAATMAVNDCWRNSHGNCALKMLGRLSFQPISENPLLGPSASTLDQMGALRQTFLK 127
            +V FA TM VNDC  NSHG+C+ K+LGR SFQ +SENP+LGPSASTL+ MG L    L 
Sbjct: 58  QIVLFAVTMGVNDCSGNSHGHCSAKLLGRFSFQSLSENPMLGPSASTLEHMGGLSWKALT 117

Query: 128 EYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAA 187
           E H  WR+ T PWLH+G  HL +NLG ++ VGI++E++FGP+RI +IY  S  +GSL A 
Sbjct: 118 ENHEIWRILTSPWLHSGLFHLFINLGSLIFVGIYMEQQFGPLRIAVIYFLSGIMGSLFAV 177

Query: 188 LFVQNSPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYID 247
           LFV+N P + +  + FGL+GAMLS L +NWN Y  K +A+ ++F + T+NF IG LP+ID
Sbjct: 178 LFVRNIPSISSGAAFFGLIGAMLSALAKNWNLYNSKISALAIIFTIFTVNFLIGFLPFID 237

Query: 248 NFSSIGGFISGFLLGFTLLFTPQTRIVAHSKAG-IFEHNVKSSINFKLKLDRPIMRSVSL 306
           NF++IGGFISGFLLGF LLF PQ R +  S  G +FE ++  S   K + DRP++R + L
Sbjct: 238 NFANIGGFISGFLLGFVLLFKPQLRQMPPSHKGKLFEDDMNRSTRLKEQFDRPVLRIICL 297

Query: 307 LLFVLVILGFLAAVLQGLNISQYCKWCKYIDCVPSKRWSCNDITTNCETIVSNSQLTMTC 366
           L+F  ++ G L A   G+N++++C WC+Y+DCVP+K+WSC+D+TT+CE +VS++QLT+TC
Sbjct: 298 LVFCGILAGVLLAACWGVNLNRHCHWCRYVDCVPTKKWSCSDMTTSCEAMVSDAQLTLTC 357

Query: 367 MGHGNFRVFPYTNISQARMKDLCTLLCS 394
           M +G FR+FP+TNISQAR +DLCTL+CS
Sbjct: 358 MANGKFRIFPFTNISQARTEDLCTLVCS 385

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302141893|emb|CBI19096.3| unnamed protein product [Vitis vinifera]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 211/347 (60%), Positives = 264/347 (76%), Gaps = 10/347 (2%)

Query: 9   QTQIEIKQSHQEKELANLPIITFPETQGQEYHKAKAPFFKSRGRKRGTDTWVISVFVILH 68
           QTQIEIK                 +    +  + +  FFKS  RKR  D+WVIS+FV+LH
Sbjct: 4   QTQIEIKPPQPAHH---------SDAGDDQVLEQQVRFFKSGTRKR-EDSWVISLFVVLH 53

Query: 69  VVAFAATMAVNDCWRNSHGNCALKMLGRLSFQPISENPLLGPSASTLDQMGALRQTFLKE 128
           +VAFAATM VNDCW+NSH +CA+K+LGRLSFQP+ ENPLLGPS+STLD+MGAL+QTFL  
Sbjct: 54  IVAFAATMFVNDCWQNSHRDCAIKVLGRLSFQPLWENPLLGPSSSTLDEMGALQQTFLAN 113

Query: 129 YHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAAL 188
           +H TWRLFTC WLHAG IHLI+NL  ++ VGIHLE+EFGP+RIG++YI SAF GSL A L
Sbjct: 114 HHQTWRLFTCLWLHAGAIHLIINLSSVIFVGIHLEQEFGPLRIGMVYILSAFFGSLVATL 173

Query: 189 FVQNSPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDN 248
           F+Q SP V +SG+LFGLLG+MLSGLI NW  YTDK AA+  L  V+ INFA+GLLPY+DN
Sbjct: 174 FLQKSPAVGSSGALFGLLGSMLSGLICNWKVYTDKLAALSALLLVAVINFALGLLPYVDN 233

Query: 249 FSSIGGFISGFLLGFTLLFTPQTRIVAHSKAGIFEHNVKSSINFKLKLDRPIMRSVSLLL 308
           FS++GGFISG LLGF LLF+P+   +A  K G F+++VK SI  K KLDRP++RSVS +L
Sbjct: 234 FSNLGGFISGVLLGFVLLFSPRLPRMAEKKGGFFDYSVKKSIRLKQKLDRPVLRSVSFVL 293

Query: 309 FVLVILGFLAAVLQGLNISQYCKWCKYIDCVPSKRWSCNDITTNCET 355
           F LV+ G + AVL G+++++YC WC+YI+CVPS RWSCN   T C+ 
Sbjct: 294 FGLVLAGAIVAVLHGIDMNKYCSWCQYINCVPSNRWSCNTKVTACQV 340

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766525|emb|CAN76609.1| hypothetical protein VITISV_039487 [Vitis vinifera]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 206/367 (56%), Positives = 260/367 (70%), Gaps = 27/367 (7%)

Query: 9   QTQIEIKQSHQEKELANLPIITFPETQGQEYHKAKAPFFKSRGRKRGTDTWVISVFVILH 68
           QTQIEIK                 +    +  + +  FFKS  RKR  D+WVIS+FV+LH
Sbjct: 4   QTQIEIKPPQPAHH---------SDAGDDQVLEQQVRFFKSGTRKR-EDSWVISLFVVLH 53

Query: 69  VVAFAATMAVNDCWRNSHGNCALKMLGRLSFQPISENPLLGPSASTLDQMGALRQTFLKE 128
           +VAFAATM VNDCW+NSH +CA+K+LGRLSFQP+ ENPLLGPS+STLD+MGAL+QTFL  
Sbjct: 54  IVAFAATMFVNDCWQNSHRDCAIKVLGRLSFQPLWENPLLGPSSSTLDEMGALQQTFLAN 113

Query: 129 YHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAAL 188
           +H TWRLFTC WLHAG IHLI+NL  ++ VGIHLE+EFGP                   L
Sbjct: 114 HHQTWRLFTCLWLHAGAIHLIINLSSVIFVGIHLEQEFGP-----------------PXL 156

Query: 189 FVQNSPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDN 248
           F+Q SP V +SG+LFGLLG+MLSGLI NW  YTDK AA+  L  V+ INFA+GLLPY+DN
Sbjct: 157 FLQKSPAVGSSGALFGLLGSMLSGLICNWKVYTDKLAALSALLLVAVINFALGLLPYVDN 216

Query: 249 FSSIGGFISGFLLGFTLLFTPQTRIVAHSKAGIFEHNVKSSINFKLKLDRPIMRSVSLLL 308
           FS++GGFISG LLGF LLF+P+   +   K G F++ VK S     KLDRP++RSVS +L
Sbjct: 217 FSNLGGFISGVLLGFVLLFSPRLPRMXEKKGGFFDYXVKKSXRLXQKLDRPVLRSVSFVL 276

Query: 309 FVLVILGFLAAVLQGLNISQYCKWCKYIDCVPSKRWSCNDITTNCETIVSNSQLTMTCMG 368
           F LV+ G + AVL G+++++YC WC+YI+CVPS RWSCN   T C+T+ +  +LT+TCMG
Sbjct: 277 FGLVLAGAIVAVLHGIDMNKYCSWCQYINCVPSNRWSCNTKVTACQTMENAGRLTVTCMG 336

Query: 369 HGNFRVF 375
             NFR +
Sbjct: 337 KDNFRHY 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522305|ref|XP_004168167.1| PREDICTED: inactive rhomboid protein 1-like, partial [Cucumis sativus]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/346 (54%), Positives = 246/346 (71%), Gaps = 3/346 (0%)

Query: 31  FPETQGQEYHKAKAPFFKSRGRKRGTDTWVISVFVILHVVAFAATMAVNDCWRNSHGNCA 90
           F     +   + K PFFKS  R+   DT V+SVFV+LH+VAF A M VNDCW NSH +CA
Sbjct: 35  FSTEISENLDELKIPFFKSSSRRPRGDTCVVSVFVLLHIVAFIAMMLVNDCWSNSHQDCA 94

Query: 91  LKMLGRLSFQPISENPLLGPSASTLDQMGALRQTFLKEYHHTWRLFTCPWLHAGFIHLIL 150
             +LGR+SFQP++ENPLLGPSASTL++MG L++  L EY   WRLFT P +HAG IHL++
Sbjct: 95  FGVLGRMSFQPLAENPLLGPSASTLEKMGGLQRKSLTEYRQIWRLFTFPCMHAGLIHLVI 154

Query: 151 NLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAML 210
           NLG ++ VGI LE E+GPVR GIIY+ SA+ G+L AALF QNSP V +SG+LFGLLGAM+
Sbjct: 155 NLGSVIFVGIQLELEYGPVRTGIIYLLSAYTGTLVAALFAQNSPSVGSSGALFGLLGAMI 214

Query: 211 SGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNFSSIGGFISGFLLGFTLLFTPQ 270
           SG+IRNW  YTD+F A+  +  V  INF +GLLPYIDNF+++GG ++G LLGF +LFT Q
Sbjct: 215 SGIIRNWKLYTDRFLALGSVLAVFAINFGLGLLPYIDNFANVGGLVAGVLLGFIILFTLQ 274

Query: 271 TRIV-AHSKAGIFEHNVKSSINFKL--KLDRPIMRSVSLLLFVLVILGFLAAVLQGLNIS 327
            R   A +K     +  K+  N ++  KLD+PI+R  SL LF L+  G L  V    +++
Sbjct: 275 DRQEKAQTKGYSLSYGFKNYFNLEMKQKLDKPILRCTSLFLFALLFCGSLIGVAFEFDLN 334

Query: 328 QYCKWCKYIDCVPSKRWSCNDITTNCETIVSNSQLTMTCMGHGNFR 373
           QYC WC+YIDCVP  +W C D+  +C  +VS+ +LT+TC+  GNF+
Sbjct: 335 QYCIWCRYIDCVPFMKWHCKDVAFSCAAMVSDQELTLTCLTTGNFK 380

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357461731|ref|XP_003601147.1| Rhomboid family member [Medicago truncatula] gi|355490195|gb|AES71398.1| Rhomboid family member [Medicago truncatula]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/331 (59%), Positives = 250/331 (75%), Gaps = 2/331 (0%)

Query: 65  VILHVVAFAATMAVNDCWRNSHGNCALKMLGRLSFQPISENPLLGPSASTLDQMGALRQT 124
           V++ +  F ATM VNDC+ NSHG+C    LGR SFQP++ENPLLGPS S LD+MGAL++ 
Sbjct: 2   VLIQLGFFIATMLVNDCFTNSHGDCTFPSLGRFSFQPLAENPLLGPSMSKLDEMGALQKN 61

Query: 125 FLKEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSL 184
           FL E H TWRLFT P+LHAG  HL++NL  ++ VGI LE+EFGP+RIGI+YI SAFVG+L
Sbjct: 62  FLTERHQTWRLFTFPFLHAGLFHLVINLCSVIYVGIRLEQEFGPLRIGIVYILSAFVGAL 121

Query: 185 AAALFVQNSPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLP 244
            A+LF+QN PVV +SG+LFGLLGA+LS L+ NW ++T K + +    F+   NF +G LP
Sbjct: 122 MASLFLQNIPVVGSSGALFGLLGALLSELVWNWKYHTKKISEVASFVFIFVCNFLLGFLP 181

Query: 245 YIDNFSSIGGFISGFLLGFTLLFTPQTRIVAHSKAGIFEHNVKSSINFKL--KLDRPIMR 302
           Y+DNFSSIGGFISGFLLG  LLF PQ + V  SK    ++++KS I  KL  KLDRP+ R
Sbjct: 182 YVDNFSSIGGFISGFLLGTVLLFAPQFQQVTPSKGDQIDYDLKSYIKLKLKQKLDRPVSR 241

Query: 303 SVSLLLFVLVILGFLAAVLQGLNISQYCKWCKYIDCVPSKRWSCNDITTNCETIVSNSQL 362
            VSL+LF L++ G L AVL G+NI+ YC WC Y+DC+P   W C D  T CET+VSN+ L
Sbjct: 242 IVSLILFTLLLAGCLLAVLYGININSYCTWCPYVDCIPFTSWHCKDRETFCETMVSNAHL 301

Query: 363 TMTCMGHGNFRVFPYTNISQARMKDLCTLLC 393
           TMTC+G+GNF+VF YTNIS+AR+ DLC L+C
Sbjct: 302 TMTCLGNGNFKVFHYTNISRARINDLCNLIC 332

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842567|ref|XP_002889165.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297335006|gb|EFH65424.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 174/348 (50%), Positives = 243/348 (69%), Gaps = 4/348 (1%)

Query: 8   LQTQIEIKQSHQEKELANLPIITFPETQGQEYHKAKAPFFKSRGRKRGTDTWVISVFVIL 67
           ++   E K +  ++   NL   +F  +   +    K  FF+ R R+   DTW++SVFV+L
Sbjct: 1   MEVPTEPKTTQIDEISHNL---SFSTSNAGDSSWDKISFFRHRSRQIKRDTWLVSVFVLL 57

Query: 68  HVVAFAATMAVNDCWRNSHGNCALKMLGRLSFQPISENPLLGPSASTLDQMGALRQTFLK 127
            +V FA TM VNDC RNSHG+CA K+LGR SFQP+SENP+LGPSASTL+ MG L    L 
Sbjct: 58  QIVLFAVTMGVNDCSRNSHGHCAAKLLGRFSFQPLSENPMLGPSASTLEHMGGLSWNTLT 117

Query: 128 EYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAA 187
           E H  WR+ T PWLH+G  HL +NLG ++ VGI++E++FGP+RI +IY+ S  +GSL A 
Sbjct: 118 ENHEIWRILTSPWLHSGLFHLFINLGSLIFVGIYMEQQFGPLRIAVIYLLSGIMGSLFAV 177

Query: 188 LFVQNSPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYID 247
           LFV+N   + +  + FGL+GAMLS L +NWN YT K +A+V++F + T+N  IG LP+ID
Sbjct: 178 LFVRNISSISSGAAFFGLIGAMLSALAKNWNLYTGKISALVIIFTIFTVNILIGFLPFID 237

Query: 248 NFSSIGGFISGFLLGFTLLFTPQTRIVAHSKAG-IFEHNVKSSINFKLKLDRPIMRSVSL 306
           NF++IGGFISGFLLGF LLF PQ R +  S  G +FE +   S   K + DRP++R + L
Sbjct: 238 NFANIGGFISGFLLGFVLLFKPQLRQMPPSHKGKLFEDDTNRSTRLKDQFDRPVLRIICL 297

Query: 307 LLFVLVILGFLAAVLQGLNISQYCKWCKYIDCVPSKRWSCNDITTNCE 354
           ++F  ++ G L AV  G+N++++C WC+Y+DCVP+ RWSC+D+TT+CE
Sbjct: 298 VVFCGMLAGVLLAVCWGVNLNRHCHWCRYVDCVPTNRWSCSDMTTSCE 345

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	394
TAIR|locus:2029376	351	KOM "KOMPEITO" [Arabidopsis th	0.802	0.900	0.457	8.5e-81
TAIR|locus:2066102	389	RBL1 "RHOMBOID-like 1" [Arabid	0.563	0.570	0.457	9.8e-66
TAIR|locus:2084465	394	RBL4 "RHOMBOID-like protein 4"	0.507	0.507	0.443	9.9e-60
TAIR|locus:2015193	317	RBL2 "RHOMBOID-like 2" [Arabid	0.545	0.678	0.461	7.8e-58
TAIR|locus:2182925	346	RBL3 "RHOMBOID-like protein 3"	0.725	0.826	0.395	2.5e-56
TAIR|locus:2195067	307	RBL6 "RHOMBOID-like protein 6"	0.505	0.648	0.475	9.9e-56
TAIR|locus:2127258	313	RBL7 "RHOMBOID-like protein 7"	0.482	0.607	0.486	4.2e-51
TAIR|locus:2035190	309	RBL5 "RHOMBOID-like protein 5"	0.477	0.608	0.476	8.4e-42
DICTYBASE|DDB_G0295849	489	DDB_G0295849 "rhomboid family	0.378	0.304	0.377	1.8e-22
CGD|CAL0003539	669	RBD1 [Candida albicans (taxid:	0.294	0.173	0.357	1.5e-15

TAIR|locus:2029376 KOM "KOMPEITO" [Arabidopsis thaliana (taxid:3702)]

 Score = 811 (290.5 bits), Expect = 8.5e-81, P = 8.5e-81
 Identities = 145/317 (45%), Positives = 201/317 (63%)

Query:    43 KAPFFKSRGRKRGTDTWVISVFVILHVVAFAATMAVNDCWRNSHGNCALKMLGRLSFQPI 102
             K  FF+ R R+   DTW++SVFV+L +V FA TM VNDC  NSHG+C+ K+LGR SFQ +
Sbjct:    33 KISFFRHRSRQIKRDTWLVSVFVLLQIVLFAVTMGVNDCSGNSHGHCSAKLLGRFSFQSL 92

Query:   103 SENPLLGPSASTLDQMGALRQTFLKEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHL 162
             SENP+LGPSASTL+ MG L    L E H  WR+ T PWLH+G  HL +NLG ++ VGI++
Sbjct:    93 SENPMLGPSASTLEHMGGLSWKALTENHEIWRILTSPWLHSGLFHLFINLGSLIFVGIYM 152

Query:   163 EKEFGPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLIRNWNFYTD 222
             E++FGP+RI +IY  S  +GSL A LFV+N P + +  + FGL+GAMLS L +NWN Y  
Sbjct:   153 EQQFGPLRIAVIYFLSGIMGSLFAVLFVRNIPSISSGAAFFGLIGAMLSALAKNWNLYNS 212

Query:   223 KFAAIVLLFFVSTINFAIGLLPYIDNXXXXXXXXXXXXXXXXXXXXPQTRIVAHSKAG-I 281
             K +A+ ++F + T+NF IG LP+IDN                    PQ R +  S  G +
Sbjct:   213 KISALAIIFTIFTVNFLIGFLPFIDNFANIGGFISGFLLGFVLLFKPQLRQMPPSHKGKL 272

Query:   282 FEHNVKSSINFKLKLDRPIMRXXXXXXXXXXXXXXXXXXXQGLNISQYCKWCKYIDCVPS 341
             FE ++  S   K + DRP++R                    G+N++++C WC+Y+DCVP+
Sbjct:   273 FEDDMNRSTRLKEQFDRPVLRIICLLVFCGILAGVLLAACWGVNLNRHCHWCRYVDCVPT 332

Query:   342 KRWSCNDITTNCETIVS 358
             K+WSC+D+TT+CE   S
Sbjct:   333 KKWSCSDMTTSCEVYSS 349

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2066102 RBL1 "RHOMBOID-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 528 (190.9 bits), Expect = 9.8e-66, Sum P(2) = 9.8e-66
 Identities = 103/225 (45%), Positives = 149/225 (66%)

Query:    25 NLPIITFPETQGQEYHKA-KAPFFKSRGRKRGTDTWVISVFVILHVVAFAATMAVNDCWR 83
             N+ + T P T  +   +  +A F + R  K     W++   V+ ++  FA +M +N+C +
Sbjct:    23 NVAVETSPATATRRRRQQQRASFAEFRPFKLWFP-WLVPAIVVANIALFAISMFINNCPK 81

Query:    84 NSHGNCALKMLGRLSFQPISENPLLGPSASTLDQMGALRQTFLKEYHHTWRLFTCPWLHA 143
             NS   C  + LGR +FQP+ ENPLLGPS+ TL++MGAL  + +   H  WRLFTC WLHA
Sbjct:    82 NS-AYCLARFLGRFAFQPMKENPLLGPSSLTLEKMGALDVSMVVHKHEVWRLFTCIWLHA 140

Query:   144 GFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLF 203
             G  H++ N+  ++ +GI LE+EFG VRIG++Y+ S F GSL ++LF +    V ASG+LF
Sbjct:   141 GVFHVLANMLSLIFIGIRLEQEFGFVRIGLLYMISGFGGSLLSSLFNRAGISVGASGALF 200

Query:   204 GLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDN 248
             GLLGAMLS L+ NW  Y +KFAA++ L F+  IN A+G+LP++DN
Sbjct:   201 GLLGAMLSELLTNWTIYANKFAALLTLIFIIAINLAVGILPHVDN 245

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2084465 RBL4 "RHOMBOID-like protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 463 (168.0 bits), Expect = 9.9e-60, Sum P(2) = 9.9e-60
 Identities = 90/203 (44%), Positives = 130/203 (64%)

Query:    48 KSRGRK--RGTDTWVISVFVILHVVAFAATMAVNDCWRNSHGNCALKMLGRLSFQPISEN 105
             + RG K  R    W+I  FV+ +V  F  TM VN+C + S G+C    LGR SFQ   EN
Sbjct:    54 RGRGVKEFRSWFPWLIPCFVVANVAVFVITMYVNNCPKKS-GDCFADFLGRFSFQNTREN 112

Query:   106 PLLGPSASTLDQMGALRQTFLKEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKE 165
             PLLGPS+ TL  MG L    + +    WRL +C WLH G +HL++N+  ++ +GI +E+E
Sbjct:   113 PLLGPSSLTLQTMGGLDVKKVVKGDEGWRLLSCNWLHGGVVHLLMNMLTLLFIGIRMERE 172

Query:   166 FGPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFA 225
             FG +RIG++Y+ S F GS+ +ALF++++  V ASG++FGLLG MLS +  NW  Y++K  
Sbjct:   173 FGFIRIGLLYLISGFGGSILSALFLRSNISVGASGAVFGLLGGMLSEIFINWTIYSNKVV 232

Query:   226 AIVLLFFVSTINFAIGLLPYIDN 248
              IV L  +  +N  +G+LP +DN
Sbjct:   233 TIVTLVLIVAVNLGLGVLPGVDN 255

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2015193 RBL2 "RHOMBOID-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 521 (188.5 bits), Expect = 7.8e-58, Sum P(2) = 7.8e-58
 Identities = 102/221 (46%), Positives = 143/221 (64%)

Query:    33 ETQGQEYHKAKAPFF--KSRGRKRGTDTWVISVFVILHVVAFAATMAVNDCWRNSHG--- 87
             E  G++   A   +F  +S G    T +W+I   V+ ++  F A M VNDC +   G   
Sbjct:     7 ERVGKKNRGANNNYFYEESSGETHWT-SWLIPAIVVANLAVFIAVMFVNDCPKKITGPNK 65

Query:    88 NCALKMLGRLSFQPISENPLLGPSASTLDQMGALRQTFLKEYHHTWRLFTCPWLHAGFIH 147
              C  + LGR SFQP+ ENPL GPS+STL++MGAL    +   H  WRL +C WLHAG IH
Sbjct:    66 ECVARFLGRFSFQPLKENPLFGPSSSTLEKMGALEWRKVVHEHQGWRLLSCMWLHAGIIH 125

Query:   148 LILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLG 207
             L+ N+  ++ +GI LE++FG +R+G+IY+ S   GS+ ++LF+Q S  V ASG+LFGLLG
Sbjct:   126 LLTNMLSLIFIGIRLEQQFGFIRVGLIYLISGLGGSILSSLFLQESISVGASGALFGLLG 185

Query:   208 AMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDN 248
             AMLS L+ NW  Y +K AA++ L F+  IN A+G+LP +DN
Sbjct:   186 AMLSELLTNWTIYANKAAALITLLFIIAINLALGMLPRVDN 226

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2182925 RBL3 "RHOMBOID-like protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 118/298 (39%), Positives = 173/298 (58%)

Query:    58 TWVISVFVILHVVAFAATMAVNDCWRN--SH---GNCALKMLGRLSFQPISENPLLGPSA 112
             +W++ +FV+ +V  F   M VN+C  +  SH   G+C  K LGRLSF+P+  NPL GPS+
Sbjct:    55 SWLVPMFVVANVAVFVVAMFVNNCPNHFESHRLRGHCVAKFLGRLSFEPLRTNPLFGPSS 114

Query:   113 STLDQMGALRQTFLKEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIG 172
              TL+++GAL  + + E    WRL TC WLHAG IHL  N+  +V +GI LE++FG VRIG
Sbjct:   115 HTLEKLGALEWSKVVEKKEGWRLLTCIWLHAGVIHLGANMLSLVFIGIRLEQQFGFVRIG 174

Query:   173 IIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFF 232
             +IY+ S   GS+ ++LF++NS  V ASG+LFGLLG+MLS L  NW  Y++K AA++ L F
Sbjct:   175 VIYLLSGIGGSVLSSLFIRNSISVGASGALFGLLGSMLSELFTNWTIYSNKIAALLTLLF 234

Query:   233 VSTINFAIGLLPYIDNXXXXXXXXXXXXXXXXXXXXPQTRIVAHSKAGIFEHNVKSS-IN 291
             V  IN AIG+LP++DN                    PQ + +A       EH  + + + 
Sbjct:   235 VILINLAIGILPHVDNFAHVGGFVTGFLLGFILLARPQFKWLAR------EHMPQGTPLR 288

Query:   292 FKLKLDRPIMRXXXXXXXXXXXXXXXXXXXQGLNISQYCKWCKYIDCVPSKRWSCNDI 349
             +K K  + ++                    +G N + +C+WC Y+ CVP+  W C+D+
Sbjct:   289 YKYKTYQYLLWLLSLVLLIAGFVVALLMLFRGENGNDHCRWCHYLRCVPTSSWRCDDV 346

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2195067 RBL6 "RHOMBOID-like protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 502 (181.8 bits), Expect = 9.9e-56, Sum P(2) = 9.9e-56
 Identities = 98/206 (47%), Positives = 136/206 (66%)

Query:    50 RGRKRGTDT----WVISVFVILHVVAFAATMAVNDCWRNS---HGNCALKMLGRLSFQPI 102
             RGRK   DT    W+    V+ +V  F   M  NDC + +   +G+C  K+L R SFQP+
Sbjct:     8 RGRKHRGDTQWTAWLTPTIVVANVSIFIVVMYTNDCPKTTTGANGDCVAKLLRRFSFQPL 67

Query:   103 SENPLLGPSASTLDQMGALRQTFLKEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHL 162
              ENP LGPS+STL+++GAL    + + +  WRL T  WLHAG IHL++N+  +++ GI L
Sbjct:    68 RENPFLGPSSSTLEKLGALDWKKVVQGNEKWRLITAMWLHAGIIHLVMNMFDVIIFGIRL 127

Query:   163 EKEFGPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLIRNWNFYTD 222
             E++FG +RIG+IY+ S F GS+ +ALF+Q S  V ASG+L GL+GAMLS L+ NW  Y  
Sbjct:   128 EQQFGFIRIGLIYLISGFGGSILSALFLQKSISVGASGALLGLMGAMLSELLTNWTIYKS 187

Query:   223 KFAAIVLLFFVSTINFAIGLLPYIDN 248
             K  A++   F+  IN AIGLLP++DN
Sbjct:   188 KLCALLSFLFIIAINLAIGLLPWVDN 213

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2127258 RBL7 "RHOMBOID-like protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 492 (178.3 bits), Expect = 4.2e-51, Sum P(2) = 4.2e-51
 Identities = 93/191 (48%), Positives = 125/191 (65%)

Query:    58 TWVISVFVILHVVAFAATMAVNDCWRNSHGNCALKMLGRLSFQPISENPLLGPSASTLDQ 117
             +W+I + VI +VV F   M  NDC   SH  C  K LGR SF+    NPLLGPS+STL++
Sbjct:    31 SWIIPIVVIANVVVFVVVMYYNDCPHKSH-RCLAKFLGRFSFESFKSNPLLGPSSSTLEK 89

Query:   118 MGALRQTFLKEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIF 177
             MGAL    +      WRL TC WLHAG IHL+ N+ C+  +G+ LE++FG VR+G IY+ 
Sbjct:    90 MGALAWGKIVHKRQVWRLLTCMWLHAGVIHLLANMCCVAYIGVRLEQQFGFVRVGTIYLV 149

Query:   178 SAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTIN 237
             S F GS+ + LF++++  V AS +LFGLLGAMLS L+ NW  Y +K  AIV+L  +  +N
Sbjct:   150 SGFCGSILSCLFLEDAISVGASSALFGLLGAMLSELLINWTTYDNKGVAIVMLLVIVGVN 209

Query:   238 FAIGLLPYIDN 248
               +G LP +DN
Sbjct:   210 LGLGTLPPVDN 220

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2035190 RBL5 "RHOMBOID-like protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 92/193 (47%), Positives = 125/193 (64%)

Query:    59 WVISVFVILHVVAFAATMAVNDCWRNSHGNCAL-KMLGRLSFQPISENPLLGPSASTLDQ 117
             W++ + +  + V FA TM VNDC   S   C L  +LGRLSFQPI EN LLGPS  TL +
Sbjct:    34 WLVPLILAANFVTFATTMYVNDCPARSD-ECLLFDVLGRLSFQPIKENMLLGPSIPTLRK 92

Query:   118 MGALRQTFLKEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIF 177
             +GAL +  ++E    WRL +C WLH GF+HL+ N+  ++ +G+ LE+EFG +RIG +Y+ 
Sbjct:    93 LGALERRLVEEGER-WRLISCIWLHGGFLHLMANMISLMCIGMRLEQEFGFMRIGALYVI 151

Query:   178 SAFVGSLAAALF-VQNSPV-VCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVST 235
             S   GSL + L   Q   V V ASG+LFGLLGAMLS LI NW  Y +K  A++ L  +  
Sbjct:   152 SGLGGSLVSCLTDSQGERVSVGASGALFGLLGAMLSELITNWTIYENKCTALMTLILIIV 211

Query:   236 INFAIGLLPYIDN 248
             +N ++G LP +DN
Sbjct:   212 LNLSVGFLPRVDN 224

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

DICTYBASE|DDB_G0295849 DDB_G0295849 "rhomboid family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 255 (94.8 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
 Identities = 57/151 (37%), Positives = 84/151 (55%)

Query:    99 FQPISENPLLGPSASTLDQMGALRQTFLKEYHHTWRLFTCPWLHAGFIHLILNLGCIVLV 158
             F+P   NP  GP++ TL  +GA     +      WR FT  +LH G  H ++N+   + V
Sbjct:   261 FEPWKTNPWFGPNSYTLLDVGAKYSPLILN-GEWWRFFTPIFLHVGIFHYLMNMVTQLRV 319

Query:   159 GIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLIRNWN 218
             G+ LE+ +G  RI  IY+     G+L +A+ + NS  V ASG++FG LG +L+ LIRNW+
Sbjct:   320 GMQLERAYGGHRIVPIYLLCGVAGNLCSAIMLPNSVQVGASGAIFGFLGVLLTDLIRNWS 379

Query:   219 FYTDKFAAIVLLFFVSTINFAIGL-LPYIDN 248
                  +     L F    +FA+GL LP +DN
Sbjct:   380 VLAKPWLNFGSLLFSIITSFAVGLFLPGVDN 410

GO:0016021 "integral to membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=ISS

CGD|CAL0003539 RBD1 [Candida albicans (taxid:5476)]

 Score = 170 (64.9 bits), Expect = 1.5e-15, Sum P(3) = 1.5e-15
 Identities = 44/123 (35%), Positives = 65/123 (52%)

Query:   133 WRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFV-Q 191
             +R+F   +LHAGF+H+I NL   V +G  +E+  G ++  IIYI S   G L  A F  Q
Sbjct:   310 YRIFIPIFLHAGFLHIIFNLLLQVTMGSSIERNIGIIKYAIIYISSGIGGFLLGANFTPQ 369

Query:   192 NSPVVCASGSLFGLLGAMLSGLI----RNWNFYTDKFAAIVLLFFVS--TINFAIGLLPY 245
                   ASG+LFG++   +   I    +N N Y  K  A+ +   +    I+  +GLLP 
Sbjct:   370 GIASTGASGALFGIVATNIILFIYTGKKNTNMYGTKHYALFICIMIGEIVISLVLGLLPG 429

Query:   246 IDN 248
             +DN
Sbjct:   430 LDN 432

GO:0044182 "filamentous growth of a population of unicellular organisms" evidence=IMP

GO:1900429 "negative regulation of filamentous growth of a population of unicellular organisms" evidence=IMP

GO:0030447 "filamentous growth" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	LOW CONFIDENCE prediction!
3rd Layer	3.4.21.105	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	394
pfam01694	146	pfam01694, Rhomboid, Rhomboid family	3e-36
COG0705	228	COG0705, COG0705, Membrane associated serine prote	4e-18
PTZ00101	278	PTZ00101, PTZ00101, rhomboid-1 protease; Provision	7e-12
TIGR03902	154	TIGR03902, rhom_GG_sort, rhomboid family GlyGly-CT	5e-06

>gnl|CDD|216649 pfam01694, Rhomboid, Rhomboid family

 Score =  128 bits (325), Expect = 3e-36
 Identities = 63/139 (45%), Positives = 88/139 (63%), Gaps = 1/139 (0%)

Query: 133 WRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFV-Q 191
           WRL T  +LHAG++HL+ N+  ++  GI LE+  G VR  ++Y+ S   GSL + LF   
Sbjct: 8   WRLITSMFLHAGWLHLLFNMLALLFFGIPLERILGSVRFLLLYLLSGLAGSLLSYLFSPA 67

Query: 192 NSPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNFSS 251
           +SP V ASG++FGLLGA+L  L RN     +   A++LL  +  +N  +G LP I NF+ 
Sbjct: 68  SSPSVGASGAIFGLLGALLVLLPRNRILLFNFPGALLLLLGIILLNLLLGFLPGISNFAH 127

Query: 252 IGGFISGFLLGFTLLFTPQ 270
           +GG I+G LLGF LL  PQ
Sbjct: 128 LGGLIAGLLLGFLLLRRPQ 146

This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. Length = 146

>gnl|CDD|223777 COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]

 Score = 82.1 bits (203), Expect = 4e-18
 Identities = 48/141 (34%), Positives = 72/141 (51%), Gaps = 8/141 (5%)

Query: 133 WRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQN 192
           WRL T  +LHAGF+HL+ N+  + + G +LE+  G +R  + Y+ S  +  LA  LF   
Sbjct: 69  WRLITAIFLHAGFLHLLFNMLALWVFGSNLERRLGTLRFLLFYLLSGLLAGLAQVLFGPK 128

Query: 193 S--PVVCASGSLFGLLGAM--LSGLIRNW--NFYTDKFAAIVLLFFV--STINFAIGLLP 244
              P + ASG++FGLLGA   L    R         + A I++L ++  S  + A    P
Sbjct: 129 GGAPSLGASGAIFGLLGAYFLLFPFARILLLFLSLPRPALILILIWLLYSLFSGAGSFGP 188

Query: 245 YIDNFSSIGGFISGFLLGFTL 265
            +   + +GG I G LL   L
Sbjct: 189 SVAWSAHLGGLIGGLLLAALL 209

Length = 228

>gnl|CDD|185445 PTZ00101, PTZ00101, rhomboid-1 protease; Provisional

 Score = 64.9 bits (158), Expect = 7e-12
 Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 14/163 (8%)

Query: 108 LGPSASTLDQMGALRQTFLKEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFG 167
           L PS S L  +GA   + +K+     RL    +LHA   H   N+   + +G  LEK +G
Sbjct: 79  LTPSDSLLVTLGANVASRIKQ-GEIHRLILPIFLHANIFHTFFNVFFQLRMGFTLEKNYG 137

Query: 168 PVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLIRNWNFYTDK---- 223
            V+I I+Y  +   G++ ++        V AS S  GLLG + S LI  W+    +    
Sbjct: 138 IVKIIILYFLTGIYGNILSSSVTYCPIKVGASTSGMGLLGIVTSELILLWHVIRHRERVV 197

Query: 224 ----FAAIVLLFFVSTINFAIGLLPYIDNFSSIGGFISGFLLG 262
               F +++  F+  T N +      ID+   +GG +SG  +G
Sbjct: 198 FNIIFFSLISFFYYFTFNGS-----NIDHVGHLGGLLSGISMG 235

Length = 278

>gnl|CDD|234388 TIGR03902, rhom_GG_sort, rhomboid family GlyGly-CTERM serine protease

 Score = 45.7 bits (109), Expect = 5e-06
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 11/102 (10%)

Query: 133 WRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQN 192
           WRL T  ++H  + HL++NL  ++L+ +  E+     R+ ++ +  + + SL   LF   
Sbjct: 17  WRLLTGHFVHLNWWHLLMNLAGLLLLWLLFERHLRARRLLLLLLLLSLLISLGLLLF--- 73

Query: 193 SPVVCA----SGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLL 230
            P +      SG L GL        IR    Y  +   ++LL
Sbjct: 74  LPSLQWYVGLSGVLHGLFAWGALRDIR----YGRRSGWLLLL 111

This model describes a rhomboid-like intramembrane serine protease. Its species distribution closely matches model TIGR03501, GlyGly-CTERM, which describes a protein targeting domain analogous to LPXTG and PEP-CTERM. In a number of species (Ralstonia eutropha ,R. metallidurans, R. solanacearum, Marinobacter aquaeolei, etc) with just one GlyGly-CTERM protein (i.e., a dedicated system), the rhombosortase and GlyGly-CTERM genes are adjacent. Length = 154

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	394
KOG2289	316	consensus Rhomboid family proteins [Signal transdu	100.0
PTZ00101	278	rhomboid-1 protease; Provisional	100.0
KOG2290	652	consensus Rhomboid family proteins [Signal transdu	100.0
PRK10907	276	intramembrane serine protease GlpG; Provisional	99.96
COG0705	228	Membrane associated serine protease [Amino acid tr	99.92
PF01694	145	Rhomboid: Rhomboid family; InterPro: IPR022764 In	99.9
KOG2632	258	consensus Rhomboid family proteins [Function unkno	99.68
KOG2980	310	consensus Integral membrane protease of the rhombo	98.81
PF08551	99	DUF1751: Eukaryotic integral membrane protein (DUF	98.1
PF04511	197	DER1: Der1-like family; InterPro: IPR007599 The en	97.77
KOG0858	239	consensus Predicted membrane protein [Function unk	97.24
KOG2890	326	consensus Predicted membrane protein [Function unk	96.79
KOG2290	652	consensus Rhomboid family proteins [Signal transdu	96.78
KOG4463	323	consensus Uncharacterized conserved protein [Funct	94.77
COG5291	313	Predicted membrane protein [Function unknown]	92.61

>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=100.00  E-value=6.3e-46  Score=359.63  Aligned_cols=277  Identities=41%  Similarity=0.721  Sum_probs=242.9

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHhccccccCCCc----hhhh-hhcccccccCCCCCCCCCChhHHHHhcchhhhhhh
Q 048569           53 KRGTDTWVISVFVILHVVAFAATMAVNDCWRNSHGN----CALK-MLGRLSFQPISENPLLGPSASTLDQMGALRQTFLK  127 (394)
Q Consensus        53 ~~~~~p~vt~~li~i~v~vfi~~~~~~~~~~~~~~~----~~~~-~~~~~sf~p~~~np~lgps~~~L~~~Gal~~~~i~  127 (394)
                      +..+.+|.+..+...|+..|+..++.++|++..+++    |... ++++|+|++.++||+.+|+..++..+|+....++.
T Consensus        35 ~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~f~~~~~~~~l~~f~~~~~~~n~~~~~s~~~~~~~~~~~i~~~~  114 (316)
T KOG2289|consen   35 PRSWTKWLIPRFAVANVPEFIVVMYVNDCPKCCPPPIFMLCLAIVFLGRFSFQGLRENPLLGPSSLTLEKMGGLLIYKPV  114 (316)
T ss_pred             cchhhHHHHhHHHhhccchhheeeeeecccccCCCchhhhhhhhhhhheeeeeeeccCCccCcCCCCccccCCceecChh
Confidence            467889999999999999999999999999887777    8877 99999999999999999999999999999999999


Q ss_pred             ccCCcchheecccccccHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhcCCCcccCchHHHHHHHH
Q 048569          128 EYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLG  207 (394)
Q Consensus       128 ~~~q~wRliTs~FlH~g~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~~~l~~~~~~~vGaSGaifGLlg  207 (394)
                      +++|+||++|++|+|+|+.||++||+.|+++|..+|+.+|.+|+.++|+++|++|++++.++.++..+|||||++|||+|
T Consensus       115 ~r~E~WRllTym~LHaGi~HL~~N~~~ql~iGi~LE~~~G~~RiglIYl~gg~aGSlls~l~d~~~~sVGASggvfaLlg  194 (316)
T KOG2289|consen  115 HRGELWRLLTYMWLHAGIFHLLLNMLSQLFIGIPLEQVHGFLRIGLIYLAGGVAGSLLSSLFDPNSISVGASGGVFALLG  194 (316)
T ss_pred             hhchhHHHHHHHHHhcCHHHHHHHHHHHHhccccHHhhcCceEEeeehhhhhhhhHHHHHHhccCCceecccHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhccccccchhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccccc
Q 048569          208 AMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNFSSIGGFISGFLLGFTLLFTPQTRIVAHSKAGIFEHNVK  287 (394)
Q Consensus       208 a~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~g~~p~vd~~aHLgG~l~G~l~g~~ll~~p~~r~~~~~~~~~~~~~~~  287 (394)
                      ++++++..||..++++...+..+++++.+++.+|+.|++|+++|+||++.|..+|++...+++-...   ..++..... 
T Consensus       195 A~Ls~l~~Nw~~m~~~~~~l~~ll~Ii~i~l~~G~~~~~~~~~h~gg~~~G~~~~fil~~~g~~~~~---~~~~~~~~~-  270 (316)
T KOG2289|consen  195 AHLSNLLTNWTIMKNKFAALRTLLIIIFINLDLGFAPYVDNFAHIGGLLAGFLLGFVLHIGGQLGGI---TIGLIVLRV-  270 (316)
T ss_pred             HHHHHHHhhHHHhcchHHHHHHHHHHHHHHHhhccccceeccccccccCCCcchhHHhhhccceeEE---eccceeeec-
Confidence            9999999999999999998888999999999999999999999999999999999999988774322   223333222 


Q ss_pred             cccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccceeeeec
Q 048569          288 SSINFKLKLDRPIMRSVSLLLFVLVILGFLAAVLQGLNISQYCKWCKYIDCVP  340 (394)
Q Consensus       288 ~~~~~~~~~~~~~l~~v~l~~~~~li~~~~~~~~~~~~~~~~C~~C~y~~C~p  340 (394)
                         +.|++..|.+.|++..+.++..+.+....+|++    ++|.||+++.|+|
T Consensus       271 ---~~~~~~~q~~~w~~~~~~~v~~~~~~~~~if~~----~~~~~~~~~~~~~  316 (316)
T KOG2289|consen  271 ---FSKRLPYQLLLWIVLLVYLVAGLFASLFNIFDG----KYCLWCHPLSCVP  316 (316)
T ss_pred             ---cccccccchHHHHHHHHHHHHHHHHHHHHhhcC----CccccccccCCCC
Confidence               256677777777666665333332222345544    8999999999987

>PTZ00101 rhomboid-1 protease; Provisional

Probab=100.00  E-value=7.7e-36  Score=287.05  Aligned_cols=196  Identities=27%  Similarity=0.371  Sum_probs=162.7

Q ss_pred             ccCCCCCCCchhHHHHHHHHHHHHHHHHHHhccccccCCCchhhhhhcccccccCCCCCCCCCChhHHHHhcchhhhhhh
Q 048569           48 KSRGRKRGTDTWVISVFVILHVVAFAATMAVNDCWRNSHGNCALKMLGRLSFQPISENPLLGPSASTLDQMGALRQTFLK  127 (394)
Q Consensus        48 ~~~~~~~~~~p~vt~~li~i~v~vfi~~~~~~~~~~~~~~~~~~~~~~~~sf~p~~~np~lgps~~~L~~~Gal~~~~i~  127 (394)
                      -+|+.++...+.+|..++++|+++|++++..+                        .+..++|+++.+.++|+++++.+.
T Consensus        43 ler~Fp~f~i~~l~~~Iiii~iivfil~l~~~------------------------~~~~l~p~~~~L~~~Ga~~~~~i~   98 (278)
T PTZ00101         43 LNLIFPHFTWKSFIMAISIIQIIVFIISVSIK------------------------PADFLTPSDSLLVTLGANVASRIK   98 (278)
T ss_pred             HHHHcCCccHHHHHHHHHHHHHHHHHHHHHhc------------------------ccccCCCCHHHHHHHhCcchhhhh
Confidence            34566888999999999999999999987532                        122467888999999999988775


Q ss_pred             ccCCcchheecccccccHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhcCCCcccCchHHHHHHHH
Q 048569          128 EYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLG  207 (394)
Q Consensus       128 ~~~q~wRliTs~FlH~g~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~~~l~~~~~~~vGaSGaifGLlg  207 (394)
                      + +||||++|++|+|.|+.|+++||+.++.+|..+|+.+|++|+.++|+++|++|++++..+.+...++||||++||++|
T Consensus        99 ~-gq~WRLiT~~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~ilYl~sGi~G~l~s~~~~~~~~svGASgAifGLiG  177 (278)
T PTZ00101         99 Q-GEIHRLILPIFLHANIFHTFFNVFFQLRMGFTLEKNYGIVKIIILYFLTGIYGNILSSSVTYCPIKVGASTSGMGLLG  177 (278)
T ss_pred             c-CCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHccCCcEEehhHHHHHHHH
Confidence            4 999999999999999999999999999999999999999999999999999999999998877889999999999999


Q ss_pred             HHHhhhhccccccchhHHHHHHHHHHHHHHHHH--hh-cCchhHHHHHHHHHHHHHHHHHHhcC
Q 048569          208 AMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAI--GL-LPYIDNFSSIGGFISGFLLGFTLLFT  268 (394)
Q Consensus       208 a~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~--g~-~p~vd~~aHLgG~l~G~l~g~~ll~~  268 (394)
                      +.++++..+|...+.+...+..++.+.++.+..  .. .|++|++||+||+++|+++|+.+.++
T Consensus       178 a~~~~lil~w~~~~~~~~~~~~~i~~~li~~~l~~~~~g~~Id~~aHlGG~i~G~llg~~~~~~  241 (278)
T PTZ00101        178 IVTSELILLWHVIRHRERVVFNIIFFSLISFFYYFTFNGSNIDHVGHLGGLLSGISMGILYNSQ  241 (278)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHhh
Confidence            999988888866544443332222223332222  22 37899999999999999999987543

>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-36  Score=298.67  Aligned_cols=242  Identities=26%  Similarity=0.446  Sum_probs=202.7

Q ss_pred             cCCCchhhhhhcccccc--cCCCCCCCCCChhHHHHh-cchhhhhhhccCCcchheecccccccHHHHHHHHHHHHHHHH
Q 048569           84 NSHGNCALKMLGRLSFQ--PISENPLLGPSASTLDQM-GALRQTFLKEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGI  160 (394)
Q Consensus        84 ~~~~~~~~~~~~~~sf~--p~~~np~lgps~~~L~~~-Gal~~~~i~~~~q~wRliTs~FlH~g~~HLl~Nm~~l~~~G~  160 (394)
                      +.+|.|.+..-.+..|.  ..+||.+|+....++... |.+..-+-..++|+|||+||.|+|+|++|++..|..++.+.+
T Consensus       400 ~~qG~CeIttreYCdFmrG~~HEeAtLCSQVhC~d~VCGllPFln~e~PdQfYRL~~SLFlHagviH~~vSi~FQm~vmr  479 (652)
T KOG2290|consen  400 GTQGLCEITTREYCDFMRGYFHEEATLCSQVHCFDGVCGLLPFLNPEVPDQFYRLWLSLFLHAGVIHLLVSICFQMTVMR  479 (652)
T ss_pred             ccCceeeechHHHHHHHhhhhhhhhhhhhhhhhhhcccccccccCCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            34456666555555554  357999999999999887 665555556689999999999999999999999999999999


Q ss_pred             HHHHhhchhHHHHHHHHHHHHHHHHHHHhcCCCcccCchHHHHHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHHHH
Q 048569          161 HLEKEFGPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAI  240 (394)
Q Consensus       161 ~lE~~~G~~r~~~lyl~sgi~g~l~~~l~~~~~~~vGaSGaifGLlga~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~  240 (394)
                      .+|+..|+.|++++|++|||.|++++++|.|+.+.||.||+-||++++.+++++.+|+...+|+.++..+++.+++..+ 
T Consensus       480 dlEkL~g~~riAIiy~~SGitGNLASAIFlpY~~eVgPa~sQ~Gila~l~vEl~qs~~il~~~w~a~~~Lia~~L~L~i-  558 (652)
T KOG2290|consen  480 DLEKLAGWHRIAIIYFLSGITGNLASAIFLPYRAEVGPAGSQFGILACLFVELFQSWQILERPWRAFFHLIATLLVLCI-  558 (652)
T ss_pred             HHHHhhcchhhheeeecccccccchheeeeccccccCCcccccchHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHh-
Confidence            9999999999999999999999999999999999999999999999999999999999999999988877766555544 


Q ss_pred             hhcCchhHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 048569          241 GLLPYIDNFSSIGGFISGFLLGFTLLFTPQTRIVAHSKAGIFEHNVKSSINFKLKLDRPIMRSVSLLLFVLVILGFLAAV  320 (394)
Q Consensus       241 g~~p~vd~~aHLgG~l~G~l~g~~ll~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~l~~~~~li~~~~~~~  320 (394)
                      |++|++||+||+.|+++|++.+++++  |....+      -           +.+.+++.+.+++.+++..|++++++++
T Consensus       559 GliPWiDN~aHlfG~i~GLl~s~~~~--PYi~Fg------~-----------~d~yrKr~~ilIs~ivf~~Lla~Lvv~f  619 (652)
T KOG2290|consen  559 GLIPWIDNWAHLFGTIFGLLTSIIFL--PYIDFG------D-----------FDLYRKRFYILISQIVFSGLLAILVVVF  619 (652)
T ss_pred             ccccchhhHHHHHHHHHHHHHHHHhh--cccccc------c-----------hhhhhhHHHHHHHHHHHHHHHHHHHHhe
Confidence            99999999999999999999999998  553222      1           1223344677788888888887777755


Q ss_pred             HhcCCCCCCCCccceeeeecCCCCCcCC
Q 048569          321 LQGLNISQYCKWCKYIDCVPSKRWSCND  348 (394)
Q Consensus       321 ~~~~~~~~~C~~C~y~~C~p~~~~~C~~  348 (394)
                      | .+.  -.|+||.|++|+|+.+-+|..
T Consensus       620 y-~~~--i~cpWce~ltClP~~~~~~e~  644 (652)
T KOG2290|consen  620 Y-NYP--IDCPWCEHLTCLPFTDCFCEK  644 (652)
T ss_pred             e-ecc--cCCchhhhccccchhhhhhhh
Confidence            5 444  479999999999999877654

>PRK10907 intramembrane serine protease GlpG; Provisional

Probab=99.96  E-value=1.6e-28  Score=236.68  Aligned_cols=176  Identities=20%  Similarity=0.170  Sum_probs=128.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhccccccCCCchhhhhhcccccccCCCCCCCCCChhHHHHhcchhhhhhhccCCcchhee
Q 048569           58 TWVISVFVILHVVAFAATMAVNDCWRNSHGNCALKMLGRLSFQPISENPLLGPSASTLDQMGALRQTFLKEYHHTWRLFT  137 (394)
Q Consensus        58 p~vt~~li~i~v~vfi~~~~~~~~~~~~~~~~~~~~~~~~sf~p~~~np~lgps~~~L~~~Gal~~~~i~~~~q~wRliT  137 (394)
                      ..+|..++++|+++|+++....+                                ..+..+... +......+||||++|
T Consensus        94 ~p~T~~li~i~i~vf~l~~~~~~--------------------------------~~~~~~l~~-~~~~~~~~q~WRl~T  140 (276)
T PRK10907         94 GPLTLGVMIACVVVFILMQILGD--------------------------------QTVMLWLAW-PFDPSLKFELWRYFT  140 (276)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcc--------------------------------HHHHHHHhc-cccccccCCcHHHHh
Confidence            34899999999999999866422                                011111111 112234699999999


Q ss_pred             cccccccHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhcCCCcccCchHHHHHHHHHHHhhhhccc
Q 048569          138 CPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLIRNW  217 (394)
Q Consensus       138 s~FlH~g~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~~~l~~~~~~~vGaSGaifGLlga~~~~~~~~~  217 (394)
                      ++|+|.|+.|+++||+.+|.+|..+|+.+|++|++.+|+++|+.|+++..++.+ ...+|+||++||++|+.........
T Consensus       141 ~~flH~~~~Hl~fNml~l~~lG~~iE~~~G~~~~l~l~l~s~i~~~~~~~~~~~-~~~gGaSGvVygL~g~~~~~~~~~p  219 (276)
T PRK10907        141 HALLHFSLLHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGWVQSKFSG-PWFGGLSGVVYALMGYVWLRGERDP  219 (276)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHcc-chhhHHHHHHHHHHHHHHHHhcccc
Confidence            999999999999999999999999999999999999999999999999888753 5689999999999998755432222


Q ss_pred             cccc-hhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhc
Q 048569          218 NFYT-DKFAAIVLLFFVSTINFAIGLLPYIDNFSSIGGFISGFLLGFTLLF  267 (394)
Q Consensus       218 ~~~~-~~~~~l~~l~~~~~~~l~~g~~p~vd~~aHLgG~l~G~l~g~~ll~  267 (394)
                      .... -+...+..+++++++.+.-.+.++++|.||+||+++|+++|+..-+
T Consensus       220 ~~~~~lp~~~~~f~llwl~~g~~~~~g~~Ian~AHlgGli~Gll~g~~~~~  270 (276)
T PRK10907        220 QSGIYLPRGLIAFALLWLVAGYFDLFGMSIANAAHVAGLAVGLAMAFWDTR  270 (276)
T ss_pred             ccchhhhHHHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhhh
Confidence            1111 1222222233333332222234689999999999999999987653

>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]

Probab=99.92  E-value=1.5e-24  Score=204.28  Aligned_cols=188  Identities=26%  Similarity=0.384  Sum_probs=142.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHhccccccCCCchhhhhhcccccccCCCCCCCCCChhHHHHhcchhhhhhhccC---Ccc
Q 048569           57 DTWVISVFVILHVVAFAATMAVNDCWRNSHGNCALKMLGRLSFQPISENPLLGPSASTLDQMGALRQTFLKEYH---HTW  133 (394)
Q Consensus        57 ~p~vt~~li~i~v~vfi~~~~~~~~~~~~~~~~~~~~~~~~sf~p~~~np~lgps~~~L~~~Gal~~~~i~~~~---q~w  133 (394)
                      .+.++..++++|+++|+...+......    ...                      ..+....+..+.......   |+|
T Consensus        16 ~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~w   69 (228)
T COG0705          16 APPVTLFLILLNILVFLLELVLGWSAI----FLL----------------------TFLFRLFGLYPLNLLGALARDQLW   69 (228)
T ss_pred             cchHHHHHHHHHHHHHHHHHHccchHH----HHH----------------------HHhhhHHhhcchhhhccccccchH
Confidence            567899999999999999987643110    000                      001111222222222212   899


Q ss_pred             hheecccccccHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhcCCC--cccCchHHHHHHHHHHHh
Q 048569          134 RLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQNS--PVVCASGSLFGLLGAMLS  211 (394)
Q Consensus       134 RliTs~FlH~g~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~~~l~~~~~--~~vGaSGaifGLlga~~~  211 (394)
                      |++|++|+|+|+.|+++||+.++.+|..+|+.+|+.+++.+|+++|+++++....+.+..  +++||||++||++|+...
T Consensus        70 ~lit~~FlH~~~~Hll~N~~~l~~fg~~le~~~G~~~f~~~yl~~gl~~~~~~~~~~~~~~~~~~GASG~i~gllga~~~  149 (228)
T COG0705          70 RLITAIFLHAGFLHLLFNMLALWVFGSNLERRLGTLRFLLFYLLSGLLAGLAQVLFGPKGGAPSLGASGAIFGLLGAYFL  149 (228)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHcccccCcccchhHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999888765  799999999999999987


Q ss_pred             hhhccccccc---hhHHHHHHHHHHHHHHHHHhhcC---chhHHHHHHHHHHHHHHHHHHhcCCc
Q 048569          212 GLIRNWNFYT---DKFAAIVLLFFVSTINFAIGLLP---YIDNFSSIGGFISGFLLGFTLLFTPQ  270 (394)
Q Consensus       212 ~~~~~~~~~~---~~~~~l~~l~~~~~~~l~~g~~p---~vd~~aHLgG~l~G~l~g~~ll~~p~  270 (394)
                      ..........   .+......+.++++.+++.+...   ++++.||++|++.|++++..+.++.+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~~~~~~~  214 (228)
T COG0705         150 LFPFARILLLFLSLPRPALILILIWLLYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALLSRKLR  214 (228)
T ss_pred             HccccchhhhhccCchhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            7665433222   33444555566667777666543   79999999999999999988865433

>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.90  E-value=1.5e-24  Score=189.08  Aligned_cols=143  Identities=38%  Similarity=0.685  Sum_probs=109.9

Q ss_pred             ccCCcchheecccccccHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhcCCC-cccCchHHHHHHH
Q 048569          128 EYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQNS-PVVCASGSLFGLL  206 (394)
Q Consensus       128 ~~~q~wRliTs~FlH~g~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~~~l~~~~~-~~vGaSGaifGLl  206 (394)
                      +++|+||++|++|+|.|+.|+++|++.++.+|..+|+.+|++++..+|+.+++.++++..++.+.. +.+|+||+++|++
T Consensus         2 ~~~~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~~G~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~G~Sg~~~~l~   81 (145)
T PF01694_consen    2 QNGQWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERRLGSRRFLALYLLSGLLGSLLSLLFSPPNQPYVGASGAVFGLL   81 (145)
T ss_dssp             GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S-----SSHHHHHHHH
T ss_pred             CCCcchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhhccchHHHHHHHHHHHhhhhccccccccccccCCCcccchHHH
Confidence            469999999999999999999999999999999999999999999999999999999999988776 8999999999999


Q ss_pred             HHHHhhhhccccccchhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhcCCc
Q 048569          207 GAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNFSSIGGFISGFLLGFTLLFTPQ  270 (394)
Q Consensus       207 ga~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~g~~p~vd~~aHLgG~l~G~l~g~~ll~~p~  270 (394)
                      ++.......+++....+..........+.+.+..+..+++++.+|++|+++|++++..+.+||+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hl~G~~~G~~~~~~~~~~~~  145 (145)
T PF01694_consen   82 GAFLFLYPQNKKRLRFIYLALVVPIIVLVIILLLGFIPNISFLGHLGGFLAGLLYGFLILRRPQ  145 (145)
T ss_dssp             HHHHHHHHCCCCCS---HCCCCCCCCCCCHHHCTSSSSTTTHHHHHHHHHHHHHHHHHHCH---
T ss_pred             HHHHHHHhhccchhhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            9999888877644433211111122223444444557999999999999999999999987653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....

>KOG2632 consensus Rhomboid family proteins [Function unknown]

Probab=99.68  E-value=3.7e-16  Score=146.85  Aligned_cols=175  Identities=17%  Similarity=0.226  Sum_probs=129.0

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHhccccccCCCchhhhhhcccccccCCCCCCCCCChhHHHHhcchhhhhhhccCCcc
Q 048569           54 RGTDTWVISVFVILHVVAFAATMAVNDCWRNSHGNCALKMLGRLSFQPISENPLLGPSASTLDQMGALRQTFLKEYHHTW  133 (394)
Q Consensus        54 ~~~~p~vt~~li~i~v~vfi~~~~~~~~~~~~~~~~~~~~~~~~sf~p~~~np~lgps~~~L~~~Gal~~~~i~~~~q~w  133 (394)
                      .-..|.+|..++.++.++|++.....-                      .            ..+  ..+.....+.|.|
T Consensus        11 ~~~~p~~ts~~~~~~~~i~lv~~~~~i----------------------~------------~~~--~l~~~~l~~~ql~   54 (258)
T KOG2632|consen   11 WMKIPLLTSIVVVLAILIYLVSFFPGI----------------------V------------EVL--GLPSELLINWQLY   54 (258)
T ss_pred             cccchHHHHHHHHHHHHHHHHhccchh----------------------h------------hHh--cCCHHHhhhHHHH
Confidence            445677899999999999987653210                      0            000  1123345569999


Q ss_pred             hheecccccccHHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHHhcC---------CCcccCchHHHH
Q 048569          134 RLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFG-PVRIGIIYIFSAFVGSLAAALFVQ---------NSPVVCASGSLF  203 (394)
Q Consensus       134 RliTs~FlH~g~~HLl~Nm~~l~~~G~~lE~~~G-~~r~~~lyl~sgi~g~l~~~l~~~---------~~~~vGaSGaif  203 (394)
                      |++|++++|.+..|+++||+++|.+|..+|+.+| +.+++......++..+++..+...         ....+|.||..|
T Consensus        55 RL~Ty~l~H~s~~hllfnmlaL~~~g~~fE~~~G~t~~~l~~~~llalf~gIl~ll~~~~~~~~d~~~~~~a~G~s~v~F  134 (258)
T KOG2632|consen   55 RLITYALVHLSLPHLLFNMLALWPLGSQFERTHGTTVRILMFTVLLALFSGILYLLAYHVFLLSDLVYVEGAIGFSGVLF  134 (258)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhchhHHHhhccceehHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccccHHHH
Confidence            9999999999999999999999999999999999 888888888877777777665531         234699999999


Q ss_pred             HHHHHHHhhhhccccccchhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHH
Q 048569          204 GLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNFSSIGGFISGFLLGFT  264 (394)
Q Consensus       204 GLlga~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~g~~p~vd~~aHLgG~l~G~l~g~~  264 (394)
                      +.++...+....+.+....-......+..++.+....-+.|+.|.++|++|+++|+.+++.
T Consensus       135 am~~~~~~~sp~r~~~~fg~~siP~~l~Pw~lLi~~~~lvp~aSFlghl~GllvG~ay~~~  195 (258)
T KOG2632|consen  135 AMMAVLEVQSPVRSRSVFGLFSIPIVLAPWALLIATQILVPQASFLGHLCGLLVGYAYAFS  195 (258)
T ss_pred             HHHHHHhhcCcccchhhcccccccHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHH
Confidence            9999876654443322222222333455555555555567999999999999999999984

>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms]

Probab=98.81  E-value=3.8e-09  Score=101.52  Aligned_cols=176  Identities=14%  Similarity=0.129  Sum_probs=116.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhccccccCCCchhhhhhcccccccCCCCCCCCCChhHHHHhcchhhhhhhccCCcchhee
Q 048569           58 TWVISVFVILHVVAFAATMAVNDCWRNSHGNCALKMLGRLSFQPISENPLLGPSASTLDQMGALRQTFLKEYHHTWRLFT  137 (394)
Q Consensus        58 p~vt~~li~i~v~vfi~~~~~~~~~~~~~~~~~~~~~~~~sf~p~~~np~lgps~~~L~~~Gal~~~~i~~~~q~wRliT  137 (394)
                      |-+++.++++|+++|..|.+..-       .|.                        ++.+--.   .....---|.+++
T Consensus       115 ~g~v~~ll~~n~~vf~lWrv~~~-------~~~------------------------~~~~mls---~~~~~t~~w~i~~  160 (310)
T KOG2980|consen  115 NGVVFGLLIANAFVFTLWRVPQK-------QFT------------------------MIPWMLS---RNAYKTGCWKIIL  160 (310)
T ss_pred             CcchhHHHHHHHHHHHHHHhcch-------hhh------------------------hhhHHhh---cccccccceeEEe
Confidence            34888999999999999976421       111                        0111000   0111233566999


Q ss_pred             cccccccHHHHHHHHHHHHHHHH-HHHHhhchhHHHHHHHHHHHHHHHHHHHh----cCCCcccCchHHHHHHHHHHHhh
Q 048569          138 CPWLHAGFIHLILNLGCIVLVGI-HLEKEFGPVRIGIIYIFSAFVGSLAAALF----VQNSPVVCASGSLFGLLGAMLSG  212 (394)
Q Consensus       138 s~FlH~g~~HLl~Nm~~l~~~G~-~lE~~~G~~r~~~lyl~sgi~g~l~~~l~----~~~~~~vGaSGaifGLlga~~~~  212 (394)
                      +.|.|.+.+|+..||+.++.+.. .+--..|...+..+|+.++..|..+...-    .+..+++||||+++++++.....
T Consensus       161 s~Fsh~~a~h~g~~~~~~~~y~~~a~~~~~~~~~~~AlylSa~~~~~~i~~~~~v~~~~~gp~LGAsGav~ai~a~~~~l  240 (310)
T KOG2980|consen  161 STFSHYSALHLGPNMLVLKSYLAGALKGSLGFSSFFALYLSAGVKGLFISVKDKVPTSWAGPSLGASGAVYAILALDCTL  240 (310)
T ss_pred             ehhcchhHhhhcHHHHHHHHHhcccccCCcchhhcccceeccccccceeEeeccccccccccccccchHHHHHHHHHhhc
Confidence            99999999999999999998887 77888999999999997777765554332    23467899999999999988655


Q ss_pred             hhcccccc--chhHH--HHHHHHHHHHHHHHHhhc--CchhHHHHHHHHHHHHHHHHHHhc
Q 048569          213 LIRNWNFY--TDKFA--AIVLLFFVSTINFAIGLL--PYIDNFSSIGGFISGFLLGFTLLF  267 (394)
Q Consensus       213 ~~~~~~~~--~~~~~--~l~~l~~~~~~~l~~g~~--p~vd~~aHLgG~l~G~l~g~~ll~  267 (394)
                      .+......  ..+.+  +-..+-.++.+++....+  ..-|++||++|-+.|...+.....
T Consensus       241 fP~~~~~i~f~~~v~~ga~~~~~~i~~~~~a~~~l~~~~~n~~Ah~~gsl~Gv~va~~~~~  301 (310)
T KOG2980|consen  241 FPKTTLYILFVFPVPAGAGLAFKAIAAYDFAGLILGWGFFNHAAHLSGSLFGVVVATYLWA  301 (310)
T ss_pred             CcCcceeEEEeecccccchhHHHHHHHhhhcceeeccccchhHhhhcchHHHHHHHHHHHH
Confidence            44332221  11222  111222222333322222  356888999999999999988764

>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins

Probab=98.10  E-value=2.3e-06  Score=70.64  Aligned_cols=59  Identities=22%  Similarity=0.368  Sum_probs=54.4

Q ss_pred             CcchheecccccccHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHh
Q 048569          131 HTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALF  189 (394)
Q Consensus       131 q~wRliTs~FlH~g~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~~~l~  189 (394)
                      ..|+++|+.|++.+++.+++|.+.++..|+.+|+.+|++.++-.+.+.++..+++..++
T Consensus         7 ~pWtl~T~~fve~~i~~~l~~~~~l~~~g~~lE~~WGs~E~lkFi~vv~~~tnl~~~~~   65 (99)
T PF08551_consen    7 YPWTLFTAGFVETNIIGLLFSLLTLFYGGRYLEPIWGSREFLKFILVVNVITNLLTFLL   65 (99)
T ss_pred             ehHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhcChHHHHHHHHHHHHHhHHHHHHH
Confidence            69999999999999999999999999999999999999999998888888888776653

Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].

>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins

Probab=97.77  E-value=0.00041  Score=64.14  Aligned_cols=69  Identities=19%  Similarity=0.290  Sum_probs=51.6

Q ss_pred             hhhhhhhccCCcchheecccccccH-HHHHHHHHHHHHHHHHHHHhh-c-h-hHHHHHHHHHHHHHHHHHHHh
Q 048569          121 LRQTFLKEYHHTWRLFTCPWLHAGF-IHLILNLGCIVLVGIHLEKEF-G-P-VRIGIIYIFSAFVGSLAAALF  189 (394)
Q Consensus       121 l~~~~i~~~~q~wRliTs~FlH~g~-~HLl~Nm~~l~~~G~~lE~~~-G-~-~r~~~lyl~sgi~g~l~~~l~  189 (394)
                      .+++.+.++.|+||++|+.|.-++. .+.++|++.++..+..+|+.. + + ..++...+.+++.-.+++.+.
T Consensus        31 ~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~~~~ady~~~ll~~~~~i~~~~~~~  103 (197)
T PF04511_consen   31 FDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQGRSADYLWFLLFGASLILILSLLI  103 (197)
T ss_pred             ECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            3456677789999999999986555 699999999999999999983 2 2 456666665555555555443

For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.

>KOG0858 consensus Predicted membrane protein [Function unknown]

Probab=97.24  E-value=0.0031  Score=59.43  Aligned_cols=100  Identities=17%  Similarity=0.106  Sum_probs=73.4

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHhccccccCCCchhhhhhcccccccCCCCCCCCCChhHHHHhcchhhhhhhccCCcc
Q 048569           54 RGTDTWVISVFVILHVVAFAATMAVNDCWRNSHGNCALKMLGRLSFQPISENPLLGPSASTLDQMGALRQTFLKEYHHTW  133 (394)
Q Consensus        54 ~~~~p~vt~~li~i~v~vfi~~~~~~~~~~~~~~~~~~~~~~~~sf~p~~~np~lgps~~~L~~~Gal~~~~i~~~~q~w  133 (394)
                      -..+|.+|.....+++++=++....                            ++.|.      +--++++.+.++.|+|
T Consensus         9 ~~~iPpVTR~~~~~~v~tt~~~~l~----------------------------lIsP~------~l~~~p~Lv~kk~QiW   54 (239)
T KOG0858|consen    9 YLQIPPVTRYYTTACVVTTLLVRLD----------------------------LISPF------QLYLNPELVFKKFQIW   54 (239)
T ss_pred             HhcCChHHHHHHHHHHHHHHHHhhc----------------------------ccCch------heEecHHHHHhHhHHH
Confidence            3457889999999998877665431                            11111      1234567788899999


Q ss_pred             hheeccccccc-HHHHHHHHHHHHHHHHHHHHhhc---hhHHHHHHHHHHHHHHHHHH
Q 048569          134 RLFTCPWLHAG-FIHLILNLGCIVLVGIHLEKEFG---PVRIGIIYIFSAFVGSLAAA  187 (394)
Q Consensus       134 RliTs~FlH~g-~~HLl~Nm~~l~~~G~~lE~~~G---~~r~~~lyl~sgi~g~l~~~  187 (394)
                      |++|+.+.-.. -+|.++||+.++--++.+|+-.=   +..|+.+.+.+++.-.+.+.
T Consensus        55 RliTs~lyfg~~gf~fl~n~~FlyrY~~~LE~g~f~~rtadf~~mllf~~~l~~~~~~  112 (239)
T KOG0858|consen   55 RLITSFLYFGPFGFDFLMNLYFLYRYSSMLEEGSFRGRTADFLYMLLFGAVLLTLTGL  112 (239)
T ss_pred             HhhhhhheeccccHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence            99999998866 69999999999999999999542   36677777777776655443

>KOG2890 consensus Predicted membrane protein [Function unknown]

Probab=96.79  E-value=0.0021  Score=62.40  Aligned_cols=132  Identities=17%  Similarity=0.256  Sum_probs=88.3

Q ss_pred             CCcchheecccccccHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHH--------hcC----CCcccC
Q 048569          130 HHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAAL--------FVQ----NSPVVC  197 (394)
Q Consensus       130 ~q~wRliTs~FlH~g~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~~~l--------~~~----~~~~vG  197 (394)
                      ...|+++|+.|+-.+++..+.|.+.+.+-|..+|+.+|...++..|.+.-...+++...        +..    ..+-.|
T Consensus        65 ~~~WtliTs~fie~~vw~V~~sv~~L~v~G~~lEp~Wg~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~~~i~G  144 (326)
T KOG2890|consen   65 FFPWTLITSGFIELNVWDVLVSVLTLSVGGKFLEPNWGSLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLYIPIHG  144 (326)
T ss_pred             hhhHHHHhcchhhhhHHHHHHHHHheeecceeeccCCCCHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEEEEecc
Confidence            36999999999999999999999999999999999999999988876644333333222        211    235789


Q ss_pred             chHHHHHHHHHHHhhhhccccccchhHHHH-------HHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhc
Q 048569          198 ASGSLFGLLGAMLSGLIRNWNFYTDKFAAI-------VLLFFVSTINFAIGLLPYIDNFSSIGGFISGFLLGFTLLF  267 (394)
Q Consensus       198 aSGaifGLlga~~~~~~~~~~~~~~~~~~l-------~~l~~~~~~~l~~g~~p~vd~~aHLgG~l~G~l~g~~ll~  267 (394)
                      ..|.+.|++.++=-. ........-+...+       ..+++.+++.+     -....++.+.-+.+|.+.++.+++
T Consensus       145 ~~gilaGilVa~kQl-lpd~~il~~~~~r~~~~~lP~~~l~~~~il~i-----~~f~~f~~l~s~~~g~~~sWtYLR  215 (326)
T KOG2890|consen  145 TTGILAGILVAWKQL-LPDTIILELKSGRFLYAHLPLLVLFLSLILSI-----ITFLVFASLPSITFGVLVSWTYLR  215 (326)
T ss_pred             chHHHHHHHHHHHHH-cCceeEEeccchhhhhhhCCHHHHHHHHHHHH-----HHHHHhhhhHHHHHhhhhhhhhhe
Confidence            999999998876322 22221111111111       11111111111     234677888888999999999986

>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=96.78  E-value=0.0012  Score=67.12  Aligned_cols=85  Identities=15%  Similarity=0.271  Sum_probs=56.6

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHhccccccC--CCchhhhhhc-ccccc----cCCCCCCCCCChhHHHHhcchhhhh
Q 048569           53 KRGTDTWVISVFVILHVVAFAATMAVNDCWRNS--HGNCALKMLG-RLSFQ----PISENPLLGPSASTLDQMGALRQTF  125 (394)
Q Consensus        53 ~~~~~p~vt~~li~i~v~vfi~~~~~~~~~~~~--~~~~~~~~~~-~~sf~----p~~~np~lgps~~~L~~~Gal~~~~  125 (394)
                      .-...||+|+-+..+++.|=++.+...+...-+  +.+-...+++ +.+.+    -.++|+++||+...|++.||++.+=
T Consensus       195 ~~d~RP~FTyWlt~Vh~~V~iLsl~~YG~aP~gf~~~et~~~Vl~n~~v~e~VkYlqQeN~WiGP~~~dLI~LGA~fSPC  274 (652)
T KOG2290|consen  195 GDDHRPWFTYWLTFVHSFVTILSLCIYGIAPVGFSQHETVGDVLDNTLVYERVKYLQQENFWIGPSSADLIHLGAKFSPC  274 (652)
T ss_pred             ccCCCchhHHHHHHHHHHHHHHHHHHhcCCcccchhhHhHHHHHhhhhhhhhhHHHHhcCCccCccHHHHHHhccccChh
Confidence            345678999988888888877766554432211  1111111111 11111    1268999999999999999999999


Q ss_pred             hhccCCcchhee
Q 048569          126 LKEYHHTWRLFT  137 (394)
Q Consensus       126 i~~~~q~wRliT  137 (394)
                      +.++.|.|.++-
T Consensus       275 mrrd~q~~~~I~  286 (652)
T KOG2290|consen  275 MRRDPQVWSAIE  286 (652)
T ss_pred             hhcChHHHHHHH
Confidence            999999997763

>KOG4463 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.77  E-value=0.018  Score=54.98  Aligned_cols=63  Identities=21%  Similarity=0.427  Sum_probs=52.9

Q ss_pred             hhccCCcchheecccccccHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHh
Q 048569          126 LKEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALF  189 (394)
Q Consensus       126 i~~~~q~wRliTs~FlH~g~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~~~l~  189 (394)
                      +...+|+||++.+.|.-.+--.+.+-++.++.+ +.+||.+|+-|+..+.+.+++.+-++...+
T Consensus        45 l~~y~qywrlL~~qF~~~n~~e~~~~l~I~Y~f-R~~ERlLGShky~~fiv~s~~~~~l~~~il  107 (323)
T KOG4463|consen   45 LEKYFQYWRLLMSQFAFSNTPELMFGLYILYYF-RVFERLLGSHKYSVFIVFSGTVSLLLEVIL  107 (323)
T ss_pred             HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHHHhccccceeehhHHHHHHHHHHHHH
Confidence            344489999999999999888888877766665 899999999999999999998887776554

>COG5291 Predicted membrane protein [Function unknown]

Probab=92.61  E-value=0.42  Score=45.42  Aligned_cols=48  Identities=17%  Similarity=0.284  Sum_probs=37.4

Q ss_pred             hhhhhhccCCcchheecccccc-cHHHHHHHHHHHHHHHHHHHHh-hchh
Q 048569          122 RQTFLKEYHHTWRLFTCPWLHA-GFIHLILNLGCIVLVGIHLEKE-FGPV  169 (394)
Q Consensus       122 ~~~~i~~~~q~wRliTs~FlH~-g~~HLl~Nm~~l~~~G~~lE~~-~G~~  169 (394)
                      +.+...++-||||++|+...-+ --+..++|++.++--.+.+|+- +|+-
T Consensus        50 ~~pL~~k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS~~LE~g~f~~~   99 (313)
T COG5291          50 YSPLFLKRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYSRMLEEGCFNTS   99 (313)
T ss_pred             echhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHhccccCcc
Confidence            3445667789999999766555 4678999999999999999983 4443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	394
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	6e-33
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	3e-26
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A Length = 196

 Score =  121 bits (305), Expect = 6e-33
 Identities = 27/150 (18%), Positives = 59/150 (39%), Gaps = 2/150 (1%)

Query: 125 FLKEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSL 184
           + ++    WR  +   +H   +H++ NL    + G  +E+ FG V++ ++Y+ ++ +   
Sbjct: 43  YEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGY 102

Query: 185 AAALFVQNSPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLP 244
                         SG ++ +LG +      N + +        +L     + F   L  
Sbjct: 103 VQNYV-SGPAFFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLLVGIALGFISPLFG 161

Query: 245 Y-IDNFSSIGGFISGFLLGFTLLFTPQTRI 273
             + N + I G I G + GF      +  +
Sbjct: 162 VEMGNAAHISGLIVGLIWGFIDSKLRKNSL 191

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A* Length = 181

 Score =  102 bits (257), Expect = 3e-26
 Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 4/158 (2%)

Query: 107 LLGPSASTLDQMGALRQTFLKEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEF 166
            +      +  +              WR FT   +H   +H++ NL     +G  +EK  
Sbjct: 22  QILGDQEVMLWLAW--PFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRL 79

Query: 167 GPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAA 226
           G  ++ +I + SA +       F         SG ++ L+G +     R+          
Sbjct: 80  GSGKLIVITLISALLSGYVQQKF-SGPWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRG 138

Query: 227 IVLLFFVSTINFAIGLL-PYIDNFSSIGGFISGFLLGF 263
           +++   +  +     L    + N + I G   G  + F
Sbjct: 139 LIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAF 176

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 2e-06
 Identities = 49/320 (15%), Positives = 95/320 (29%), Gaps = 93/320 (29%)

Query: 82  WRNSHGNCA-----LKMLGRLSFQPISENPLLGPSASTLDQMGALRQTFLKEYHHTWRLF 136
           W N   NC      L+ML +L +Q      +     S  D    ++           RL 
Sbjct: 186 WLNL-KNCNSPETVLEMLQKLLYQ------IDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 137 TCPWLHAGFIH--LIL------------NLGCIVLV--------------------GIHL 162
                   + +  L+L            NL C +L+                      H 
Sbjct: 239 ----KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 163 EKEFGPVRIGIIYIFSAFVGSLAAAL---FVQNSPVVCASGSLFGLLGAMLSGLIRNWNF 219
                P  +    +   ++      L    +  +P   +      ++   +   +  W+ 
Sbjct: 295 SMTLTPDEV--KSLLLKYLDCRPQDLPREVLTTNPRRLS------IIAESIRDGLATWDN 346

Query: 220 Y----TDKFAAIVLLFFVSTINFAIGLLPYI--DNFSSIGGF-----ISGFLLG---FTL 265
           +     DK   I+       +N    L P      F  +  F     I   LL    F +
Sbjct: 347 WKHVNCDKLTTIIESS----LNV---LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399

Query: 266 LFTPQTRIVA--HSKAGIFEHNVKS-----SINFKLKLDRPIMRSV--SLLLFVLVILGF 316
           + +    +V   H  + + +   +S     SI  +LK+      ++  S++    +   F
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459

Query: 317 LAAVLQGLNISQYCKWCKYI 336
            +  L    + QY  +  +I
Sbjct: 460 DSDDLIPPYLDQY--FYSHI 477

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	394
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	99.97
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	99.96

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A

Probab=99.97  E-value=2e-30  Score=237.85  Aligned_cols=182  Identities=16%  Similarity=0.270  Sum_probs=133.0

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHhccccccCCCchhhhhhcccccccCCCCCCCCCChhHHHHhcchhhhhhhccCCcch
Q 048569           55 GTDTWVISVFVILHVVAFAATMAVNDCWRNSHGNCALKMLGRLSFQPISENPLLGPSASTLDQMGALRQTFLKEYHHTWR  134 (394)
Q Consensus        55 ~~~p~vt~~li~i~v~vfi~~~~~~~~~~~~~~~~~~~~~~~~sf~p~~~np~lgps~~~L~~~Gal~~~~i~~~~q~wR  134 (394)
                      .+.|++|..++++|+++|+++...++                                +.+.++.+..++.+ .++||||
T Consensus         6 ~~~~pvt~~li~~~v~vfll~~~~~~--------------------------------~~~~~~~~~~p~~~-~~~~~wr   52 (196)
T 2nr9_A            6 AQQGKITLILTALCVLIYIAQQLGFE--------------------------------DDIMYLMHYPAYEE-QDSEVWR   52 (196)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHTTCH--------------------------------HHHHHHHSCCCSGG-GGGCTTH
T ss_pred             cccccHHHHHHHHHHHHHHHHHHcCc--------------------------------HHHHHhhcCCHhhc-ccCCcHH
Confidence            34566999999999999999865321                                11223333333333 4589999


Q ss_pred             heecccccccHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhcCCCcccCchHHHHHHHHHHHhhhh
Q 048569          135 LFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLI  214 (394)
Q Consensus       135 liTs~FlH~g~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~~~l~~~~~~~vGaSGaifGLlga~~~~~~  214 (394)
                      ++|++|+|.|+.|+++||+.++.+|..+|+.+|++|++.+|+++|++|++++.++.+.. ++||||++||++++.+..-.
T Consensus        53 l~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~G~~~~l~~yl~~~~~~~l~~~~~~~~~-~vGaSGai~gl~g~~~~~~~  131 (196)
T 2nr9_A           53 YISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPA-FFGLSGVVYAVLGYVFIRDK  131 (196)
T ss_dssp             HHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSC-CCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHhcCCC-eeeHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999887654 99999999999998765433


Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHh-hcCchhHHHHHHHHHHHHHHHHHHhcCCc
Q 048569          215 RNWNFYTDKFAAIVLLFFVSTINFAIG-LLPYIDNFSSIGGFISGFLLGFTLLFTPQ  270 (394)
Q Consensus       215 ~~~~~~~~~~~~l~~l~~~~~~~l~~g-~~p~vd~~aHLgG~l~G~l~g~~ll~~p~  270 (394)
                      .+.+....+.+....+.+.+++.+... ..+++|+.||+||+++|++++..+.++++
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~~~~  188 (196)
T 2nr9_A          132 LNHHLFDLPEGFFTMLLVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSKLRK  188 (196)
T ss_dssp             SSTTSCCCCCSSTTTTTTTTTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcchhhcchHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhccc
Confidence            222211111111111112222232211 22489999999999999999998875443

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*

Probab=99.96  E-value=3.8e-29  Score=226.61  Aligned_cols=176  Identities=20%  Similarity=0.196  Sum_probs=130.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHhccccccCCCchhhhhhcccccccCCCCCCCCCChhHHHHhcchhhhhhhccCCcchhe
Q 048569           57 DTWVISVFVILHVVAFAATMAVNDCWRNSHGNCALKMLGRLSFQPISENPLLGPSASTLDQMGALRQTFLKEYHHTWRLF  136 (394)
Q Consensus        57 ~p~vt~~li~i~v~vfi~~~~~~~~~~~~~~~~~~~~~~~~sf~p~~~np~lgps~~~L~~~Gal~~~~i~~~~q~wRli  136 (394)
                      .|.+|..++++|+++|+++...++                                +.+.++.+..++ ...++||||++
T Consensus         3 ~~pvt~~li~~~v~vf~~~~~~~~--------------------------------~~~~~~~~~~p~-~~~~~~~wrl~   49 (181)
T 2xov_A            3 AGPVTWVMMIACVVVFIAMQILGD--------------------------------QEVMLWLAWPFD-PTLKFEFWRYF   49 (181)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHCH--------------------------------HHHHHHHSSCCS-GGGTTCTTHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhCc--------------------------------HHHHHhhcCChh-hccCCCCHHHH
Confidence            456999999999999999876421                                111222222222 23459999999


Q ss_pred             ecccccccHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhcCCCcccCchHHHHHHHHHHHhhhhcc
Q 048569          137 TCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLIRN  216 (394)
Q Consensus       137 Ts~FlH~g~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~~~l~~~~~~~vGaSGaifGLlga~~~~~~~~  216 (394)
                      |++|+|.|+.|+++||+.++.+|..+|+.+|++|++.+|+.+|+.|++++.++.+.. ++||||++||++++..+....+
T Consensus        50 T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G~~~fl~~yl~~~i~~~l~~~~~~~~~-~vGaSGai~gl~g~~~~~~~~~  128 (181)
T 2xov_A           50 THALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPW-FGGLSGVVYALMGYVWLRGERD  128 (181)
T ss_dssp             HGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSC-CCCSHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHccCHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCC-ceeHHHHHHHHHHHHHHHHhhC
Confidence            999999999999999999999999999999999999999999999999999887654 9999999999999876532222


Q ss_pred             cccc-chhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHh
Q 048569          217 WNFY-TDKFAAIVLLFFVSTINFAIGLLPYIDNFSSIGGFISGFLLGFTLL  266 (394)
Q Consensus       217 ~~~~-~~~~~~l~~l~~~~~~~l~~g~~p~vd~~aHLgG~l~G~l~g~~ll  266 (394)
                      ++.. .-+.+......+.++..+...+.+++|+.||+||+++|++++..+-
T Consensus       129 p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~  179 (181)
T 2xov_A          129 PQSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVDS  179 (181)
T ss_dssp             GGGSCCCCHHHHHHHHHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCceeeeHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHh
Confidence            2111 1122222222222233322112368999999999999999998774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	394
d3b45a1	180	f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId:	5e-15
d2nr9a1	189	f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilu	5e-15

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]} Length = 180

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

 Score = 70.5 bits (172), Expect = 5e-15
 Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 2/132 (1%)

Query: 133 WRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQN 192
           WR FT   +H   +H++ NL     +G  +EK  G  ++ +I + SA +       F   
Sbjct: 46  WRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKF-SG 104

Query: 193 SPVVCASGSLFGLLGA-MLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNFSS 251
                 SG ++ L+G   L G     +    +   I+         +       + N + 
Sbjct: 105 PWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAH 164

Query: 252 IGGFISGFLLGF 263
           I G   G  + F
Sbjct: 165 IAGLAVGLAMAF 176

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]} Length = 189

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

 Score = 70.6 bits (172), Expect = 5e-15
 Identities = 28/142 (19%), Positives = 58/142 (40%), Gaps = 2/142 (1%)

Query: 133 WRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQN 192
           WR  +   +H   +H++ NL    + G  +E+ FG V++ ++Y+ ++ +       +V  
Sbjct: 48  WRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQ-NYVSG 106

Query: 193 SPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLL-PYIDNFSS 251
                 SG ++ +LG +      N + +        +L     + F   L    + N + 
Sbjct: 107 PAFFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLLVGIALGFISPLFGVEMGNAAH 166

Query: 252 IGGFISGFLLGFTLLFTPQTRI 273
           I G I G + GF      +  +
Sbjct: 167 ISGLIVGLIWGFIDSKLRKNSL 188

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	394
d3b45a1	180	GlpG {Escherichia coli [TaxId: 562]}	99.95
d2nr9a1	189	GlpG homolog HI0618 {Haemophilus influenzae [TaxId	99.95

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=5.4e-27  Score=209.57  Aligned_cols=176  Identities=20%  Similarity=0.204  Sum_probs=133.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhccccccCCCchhhhhhcccccccCCCCCCCCCChhHHHHhcchhhhhhhccCCcchh
Q 048569           56 TDTWVISVFVILHVVAFAATMAVNDCWRNSHGNCALKMLGRLSFQPISENPLLGPSASTLDQMGALRQTFLKEYHHTWRL  135 (394)
Q Consensus        56 ~~p~vt~~li~i~v~vfi~~~~~~~~~~~~~~~~~~~~~~~~sf~p~~~np~lgps~~~L~~~Gal~~~~i~~~~q~wRl  135 (394)
                      |.+.+|..++++|+++|++....++                                +...++.+...+ ...++||||+
T Consensus         2 r~~pvT~~li~i~~~vf~~~~~~~~--------------------------------~~~~~~~~~~~~-~~~~g~~wrl   48 (180)
T d3b45a1           2 RAGPVTWVMMIACVVVFIAMQILGD--------------------------------QEVMLWLAWPFD-PTLKFEFWRY   48 (180)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHCH--------------------------------HHHHHHHSSCCS-GGGTTCGGGG
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHhCc--------------------------------HHHHHHHcCCCc-ccccCchHHH
Confidence            3455899999999999998765432                                222333333323 3445999999


Q ss_pred             eecccccccHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhcCCCcccCchHHHHHHHHHHHhhhhc
Q 048569          136 FTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLIR  215 (394)
Q Consensus       136 iTs~FlH~g~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~~~l~~~~~~~vGaSGaifGLlga~~~~~~~  215 (394)
                      +|++|+|.|+.|+++||+.++.+|..+|+.+|++|++.+|+++++.|+++..++.+ ...+|+||+++|++++.......
T Consensus        49 ~T~~f~H~~~~Hl~~N~~~l~~~G~~lE~~~G~~~~~~~~~~~~~~g~l~~~~~~~-~~~~G~sg~i~~l~~~~~~~~~~  127 (180)
T d3b45a1          49 FTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSG-PWFGGLSGVVYALMGYVWLRGER  127 (180)
T ss_dssp             TGGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC-SCCCCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHHhccchhheeeeeHHHHHHHHHHHHHhc-cccccccchHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999998875 57899999999999998876555


Q ss_pred             cccccch-hHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHH
Q 048569          216 NWNFYTD-KFAAIVLLFFVSTINFAIGLLPYIDNFSSIGGFISGFLLGFTL  265 (394)
Q Consensus       216 ~~~~~~~-~~~~l~~l~~~~~~~l~~g~~p~vd~~aHLgG~l~G~l~g~~l  265 (394)
                      +...... +..........++........+++|+.||++|+++|+++|++.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~~~~~~~  178 (180)
T d3b45a1         128 DPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVD  178 (180)
T ss_dssp             CGGGSCCCCHHHHHHHHHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHhhHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHH
Confidence            4433222 1222222222222222222358899999999999999999875

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

Probab=99.95  E-value=4.2e-28  Score=218.77  Aligned_cols=176  Identities=16%  Similarity=0.312  Sum_probs=134.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHhccccccCCCchhhhhhcccccccCCCCCCCCCChhHHHHhcchhhhhhhccCCcchhe
Q 048569           57 DTWVISVFVILHVVAFAATMAVNDCWRNSHGNCALKMLGRLSFQPISENPLLGPSASTLDQMGALRQTFLKEYHHTWRLF  136 (394)
Q Consensus        57 ~p~vt~~li~i~v~vfi~~~~~~~~~~~~~~~~~~~~~~~~sf~p~~~np~lgps~~~L~~~Gal~~~~i~~~~q~wRli  136 (394)
                      .+.+|.+++++|+++|+++....+                                +.+..... .+.....++||||++
T Consensus         5 ~~pvt~~i~~~~~~v~~~~~~~~~--------------------------------~~~~~~~~-~~~~~~~~~~~wrl~   51 (189)
T d2nr9a1           5 QGKITLILTALCVLIYIAQQLGFE--------------------------------DDIMYLMH-YPAYEEQDSEVWRYI   51 (189)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTTCH--------------------------------HHHHHHHS-CCCSGGGGGCTTHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHhcc--------------------------------HHHHHHHH-ccccccccCchHHhH
Confidence            344999999999999998765321                                12222222 223345569999999


Q ss_pred             ecccccccHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhcCCCcccCchHHHHHHHHHHHhhhhcc
Q 048569          137 TCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLIRN  216 (394)
Q Consensus       137 Ts~FlH~g~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~~~l~~~~~~~vGaSGaifGLlga~~~~~~~~  216 (394)
                      |++|+|.|+.|+++||+.++.+|..+|+.+|+++++.+|+++++.|+++..++. ..+.+|+||++||++++.......+
T Consensus        52 T~~f~H~~~~Hl~~N~~~l~~~g~~~E~~~G~~~~~~~~~~~~~~~~l~~~~~~-~~~~vGaSG~v~gl~~~~~~~~~~~  130 (189)
T d2nr9a1          52 SHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVS-GPAFFGLSGVVYAVLGYVFIRDKLN  130 (189)
T ss_dssp             HGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH-CSCCCCSHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcC-CCCcccchHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999988775 4678999999999999888777666


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHh-hcCchhHHHHHHHHHHHHHHHHHHh
Q 048569          217 WNFYTDKFAAIVLLFFVSTINFAIG-LLPYIDNFSSIGGFISGFLLGFTLL  266 (394)
Q Consensus       217 ~~~~~~~~~~l~~l~~~~~~~l~~g-~~p~vd~~aHLgG~l~G~l~g~~ll  266 (394)
                      +.....+...+..+++.+++.++.. ..+++|+.||++|+++|+++|+++.
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHl~G~l~G~~~g~~~~  181 (189)
T d2nr9a1         131 HHLFDLPEGFFTMLLVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDS  181 (189)
T ss_dssp             TTSCCCCCSSTTTTTTTTTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHhccHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHH
Confidence            5543322222222222233333322 2478999999999999999998874