Citrus Sinensis ID: 048587

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
MQSFGSQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEPRRAPSWLESLNPIEFFDEVIIEH
cccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccccccccccccHHHHHcccccccccccccc
ccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHcccHHHccccccHHHHHHHHHHHHHHcccccccccEcccccHHHHHHHcHHHHHccEEEcc
mqsfgsqtWDCAFAVQALLACNLTDEIGPILMKAHDflktsqvtdnppgdfesmfrhtskggwtfsnkdhgwpvsdctAEALLCCLyfsmlppeivgekmeperyyDAVNCIISmqsqtggvpaweprrapswleslnpieffdEVIIEH
MQSFGSQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEPRRapswleslnpieffDEVIIEH
MQSFGSQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEPRRAPSWLESLNPIEFFDEVIIEH
******QTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTS*************FRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEPRRAPSWLESLNPIEFFDEVII**
*QSFGSQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEPRRAPSWLESLNPIEFFDEVIIEH
********WDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEPRRAPSWLESLNPIEFFDEVIIEH
***FGSQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEPRRAPSWLESLNPIEFFDEVIIEH
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQSFGSQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEPRRAPSWLESLNPIEFFDEVIIEH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query150 2.2.26 [Sep-21-2011]
A8C980 759 Germanicol synthase OS=Rh N/A no 1.0 0.197 0.693 1e-60
E2IUA6 779 Taraxerol synthase OS=Kal N/A no 1.0 0.192 0.686 2e-60
Q9MB42 765 Beta-amyrin synthase OS=G N/A no 1.0 0.196 0.693 5e-60
Q8W3Z1 779 Beta-amyrin synthase OS=B N/A no 1.0 0.192 0.693 6e-60
A8CDT2 759 Beta-amyrin synthase OS=B N/A no 1.0 0.197 0.686 9e-60
Q9LRH7 764 Mixed-amyrin synthase OS= N/A no 1.0 0.196 0.66 5e-59
E2IUA9 765 Lupeol synthase OS=Kalanc N/A no 1.0 0.196 0.66 2e-58
Q2XPU7 769 Lupeol synthase OS=Ricinu N/A no 1.0 0.195 0.666 3e-58
A8CDT3 761 Lupeol synthase OS=Brugui N/A no 1.0 0.197 0.666 2e-57
O82140 763 Beta-Amyrin Synthase 1 OS N/A no 1.0 0.196 0.653 4e-57
>sp|A8C980|GERS_RHISY Germanicol synthase OS=Rhizophora stylosa GN=M1 PE=1 SV=1 Back     alignment and function desciption
 Score =  231 bits (588), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 104/150 (69%), Positives = 122/150 (81%)

Query: 1   MQSFGSQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSK 60
           MQSFGSQ WD  FA+QALLA NLTDEIG +L + HDF+K SQV DNP GDF+SM+RH SK
Sbjct: 410 MQSFGSQQWDTGFAIQALLATNLTDEIGGVLRRGHDFIKKSQVQDNPSGDFKSMYRHISK 469

Query: 61  GGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTG 120
           G WTFS++DHGW VSDCTAE L CCL FSM+PPEIVGE MEPER YD+VN ++S+QS+ G
Sbjct: 470 GSWTFSDQDHGWQVSDCTAEGLKCCLLFSMMPPEIVGEHMEPERLYDSVNVLLSLQSKNG 529

Query: 121 GVPAWEPRRAPSWLESLNPIEFFDEVIIEH 150
           G+ AWEP  A  WLE LNP EFF +++IEH
Sbjct: 530 GLSAWEPAGAQDWLELLNPTEFFADIVIEH 559
Multifunctional triterpene synthase producing germanicol, beta-amyrin and lupeol in the ratio 63:33:4.
Rhizophora stylosa (taxid: 98588)
EC: 5EC: .EC: 4EC: .EC: 9EC: 9EC: .EC: 3EC: 4
>sp|E2IUA6|TARS_KALDA Taraxerol synthase OS=Kalanchoe daigremontiana PE=1 SV=1 Back     alignment and function description
>sp|Q9MB42|BAMS_GLYGL Beta-amyrin synthase OS=Glycyrrhiza glabra GN=GgbAS1 PE=1 SV=1 Back     alignment and function description
>sp|Q8W3Z1|BAMS_BETPL Beta-amyrin synthase OS=Betula platyphylla GN=OSCBPY PE=1 SV=1 Back     alignment and function description
>sp|A8CDT2|BAS_BRUGY Beta-amyrin synthase OS=Bruguiera gymnorhiza GN=BAS PE=1 SV=1 Back     alignment and function description
>sp|Q9LRH7|ABAMS_PEA Mixed-amyrin synthase OS=Pisum sativum GN=OSCPSM PE=1 SV=1 Back     alignment and function description
>sp|E2IUA9|LUPS_KALDA Lupeol synthase OS=Kalanchoe daigremontiana PE=1 SV=1 Back     alignment and function description
>sp|Q2XPU7|LUPS_RICCO Lupeol synthase OS=Ricinus communis PE=1 SV=1 Back     alignment and function description
>sp|A8CDT3|LUPS_BRUGY Lupeol synthase OS=Bruguiera gymnorhiza GN=LUS PE=1 SV=1 Back     alignment and function description
>sp|O82140|BAMS1_PANGI Beta-Amyrin Synthase 1 OS=Panax ginseng GN=OSCPNY1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query150
353558864 759 RecName: Full=Germanicol synthase; Short 1.0 0.197 0.693 9e-59
403377890 779 RecName: Full=Taraxerol synthase; Short= 1.0 0.192 0.686 1e-58
297735720 846 unnamed protein product [Vitis vinifera] 1.0 0.177 0.686 2e-58
256750576 762 beta-amyrin synthase [Glycyrrhiza uralen 1.0 0.196 0.693 2e-58
147839872 729 hypothetical protein VITISV_001242 [Viti 1.0 0.205 0.686 2e-58
225443446 757 PREDICTED: beta-amyrin synthase [Vitis v 1.0 0.198 0.686 2e-58
294488497 762 beta-amyrin synthase [Glycyrrhiza uralen 1.0 0.196 0.693 2e-58
75264952 765 RecName: Full=Beta-amyrin synthase gi|67 1.0 0.196 0.693 3e-58
28194504 762 beta-amyrin synthase [Medicago truncatul 1.0 0.196 0.7 3e-58
357467675 670 Beta-amyrin synthase [Medicago truncatul 1.0 0.223 0.7 4e-58
>gi|353558864|sp|A8C980.1|GERS_RHISY RecName: Full=Germanicol synthase; Short=RsM1 gi|157679387|dbj|BAF80441.1| multifunctional triterpene synthase [Rhizophora stylosa] Back     alignment and taxonomy information
 Score =  231 bits (588), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 104/150 (69%), Positives = 122/150 (81%)

Query: 1   MQSFGSQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSK 60
           MQSFGSQ WD  FA+QALLA NLTDEIG +L + HDF+K SQV DNP GDF+SM+RH SK
Sbjct: 410 MQSFGSQQWDTGFAIQALLATNLTDEIGGVLRRGHDFIKKSQVQDNPSGDFKSMYRHISK 469

Query: 61  GGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTG 120
           G WTFS++DHGW VSDCTAE L CCL FSM+PPEIVGE MEPER YD+VN ++S+QS+ G
Sbjct: 470 GSWTFSDQDHGWQVSDCTAEGLKCCLLFSMMPPEIVGEHMEPERLYDSVNVLLSLQSKNG 529

Query: 121 GVPAWEPRRAPSWLESLNPIEFFDEVIIEH 150
           G+ AWEP  A  WLE LNP EFF +++IEH
Sbjct: 530 GLSAWEPAGAQDWLELLNPTEFFADIVIEH 559

Source: Rhizophora stylosa

Species: Rhizophora stylosa

Genus: Rhizophora

Family: Rhizophoraceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|403377890|sp|E2IUA6.1|TARS_KALDA RecName: Full=Taraxerol synthase; Short=KdTAS gi|300807974|gb|ADK35123.1| taraxerol synthase [Kalanchoe daigremontiana] Back     alignment and taxonomy information
>gi|297735720|emb|CBI18407.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|256750576|gb|ACV21067.1| beta-amyrin synthase [Glycyrrhiza uralensis] Back     alignment and taxonomy information
>gi|147839872|emb|CAN65909.1| hypothetical protein VITISV_001242 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225443446|ref|XP_002270934.1| PREDICTED: beta-amyrin synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|294488497|gb|ADE88148.1| beta-amyrin synthase [Glycyrrhiza uralensis] Back     alignment and taxonomy information
>gi|75264952|sp|Q9MB42.1|BAMS_GLYGL RecName: Full=Beta-amyrin synthase gi|6730969|dbj|BAA89815.1| beta-amyrin synthase [Glycyrrhiza glabra] Back     alignment and taxonomy information
>gi|28194504|gb|AAO33578.1|AF478453_1 beta-amyrin synthase [Medicago truncatula] Back     alignment and taxonomy information
>gi|357467675|ref|XP_003604122.1| Beta-amyrin synthase [Medicago truncatula] gi|355505177|gb|AES86319.1| Beta-amyrin synthase [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query150
UNIPROTKB|E2IUA6 779 E2IUA6 "Taraxerol synthase" [K 1.0 0.192 0.686 1.7e-57
UNIPROTKB|Q8W3Z1 779 OSCBPY "Beta-amyrin synthase" 1.0 0.192 0.693 3.6e-57
UNIPROTKB|A8CDT2 759 BAS "Beta-amyrin synthase" [Br 1.0 0.197 0.686 4.6e-57
UNIPROTKB|Q9LRH7 764 OSCPSM "Mixed-amyrin synthase" 0.993 0.195 0.664 3.3e-56
UNIPROTKB|E2IUA9 765 E2IUA9 "Lupeol synthase" [Kala 1.0 0.196 0.66 1.4e-55
UNIPROTKB|Q2XPU7 769 Q2XPU7 "Lupeol synthase" [Rici 1.0 0.195 0.666 1.4e-55
UNIPROTKB|A8CDT3 761 LUS "Lupeol synthase" [Bruguie 1.0 0.197 0.666 7.8e-55
TAIR|locus:2207315 759 BAS "beta-amyrin synthase" [Ar 1.0 0.197 0.62 2.1e-52
UNIPROTKB|E2IUA8 767 E2IUA8 "Friedelin synthase" [K 1.0 0.195 0.633 3.5e-52
UNIPROTKB|F8WQD0 761 SHS1 "Shionone synthase" [Aste 1.0 0.197 0.613 7.2e-52
UNIPROTKB|E2IUA6 E2IUA6 "Taraxerol synthase" [Kalanchoe daigremontiana (taxid:23013)] Back     alignment and assigned GO terms
 Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
 Identities = 103/150 (68%), Positives = 122/150 (81%)

Query:     1 MQSFGSQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSK 60
             MQSFGSQ WD  FA+QALLA N++DEIG  L K HDF+K SQV DNP GDF+SM RH SK
Sbjct:   429 MQSFGSQQWDTGFAIQALLASNMSDEIGETLAKGHDFVKKSQVKDNPSGDFKSMHRHISK 488

Query:    61 GGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTG 120
             G WTFS++DHGW VSDCTAE L CCL FS++PPE+VGEKMEPER YD+VN ++S+QS+ G
Sbjct:   489 GSWTFSDQDHGWQVSDCTAEGLKCCLLFSLMPPELVGEKMEPERLYDSVNILLSLQSKNG 548

Query:   121 GVPAWEPRRAPSWLESLNPIEFFDEVIIEH 150
             G+ AWEP  AP WLE LNP EFF +++IEH
Sbjct:   549 GLAAWEPAGAPEWLELLNPTEFFADIVIEH 578
GO:0016104 "triterpenoid biosynthetic process" evidence=IDA
GO:0016866 "intramolecular transferase activity" evidence=IDA
UNIPROTKB|Q8W3Z1 OSCBPY "Beta-amyrin synthase" [Betula platyphylla (taxid:78630)] Back     alignment and assigned GO terms
UNIPROTKB|A8CDT2 BAS "Beta-amyrin synthase" [Bruguiera gymnorhiza (taxid:39984)] Back     alignment and assigned GO terms
UNIPROTKB|Q9LRH7 OSCPSM "Mixed-amyrin synthase" [Pisum sativum (taxid:3888)] Back     alignment and assigned GO terms
UNIPROTKB|E2IUA9 E2IUA9 "Lupeol synthase" [Kalanchoe daigremontiana (taxid:23013)] Back     alignment and assigned GO terms
UNIPROTKB|Q2XPU7 Q2XPU7 "Lupeol synthase" [Ricinus communis (taxid:3988)] Back     alignment and assigned GO terms
UNIPROTKB|A8CDT3 LUS "Lupeol synthase" [Bruguiera gymnorhiza (taxid:39984)] Back     alignment and assigned GO terms
TAIR|locus:2207315 BAS "beta-amyrin synthase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E2IUA8 E2IUA8 "Friedelin synthase" [Kalanchoe daigremontiana (taxid:23013)] Back     alignment and assigned GO terms
UNIPROTKB|F8WQD0 SHS1 "Shionone synthase" [Aster tataricus (taxid:588669)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.4.99LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00029666001
SubName- Full=Chromosome chr9 scaffold_49, whole genome shotgun sequence; (757 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query150
PLN02993 763 PLN02993, PLN02993, lupeol synthase 2e-72
PLN03012 759 PLN03012, PLN03012, Camelliol C synthase 6e-71
cd02892 634 cd02892, SQCY_1, Squalene cyclase (SQCY) domain su 5e-65
cd02889 348 cd02889, SQCY, Squalene cyclase (SQCY) domain; fou 2e-57
TIGR01787 621 TIGR01787, squalene_cyclas, squalene/oxidosqualene 6e-49
TIGR03463 634 TIGR03463, osq_cycl, 2,3-oxidosqualene cyclase 2e-33
COG1657 517 COG1657, SqhC, Squalene cyclase [Lipid metabolism] 8e-14
cd00688 300 cd00688, ISOPREN_C2_like, This group contains clas 2e-13
TIGR01507 635 TIGR01507, hopene_cyclase, squalene-hopene cyclase 1e-06
cd00688300 cd00688, ISOPREN_C2_like, This group contains clas 3e-06
>gnl|CDD|215537 PLN02993, PLN02993, lupeol synthase Back     alignment and domain information 
 Score =  230 bits (587), Expect = 2e-72
 Identities = 88/149 (59%), Positives = 117/149 (78%)

Query: 1   MQSFGSQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSK 60
           MQSFGSQ WD  FA+QALLA +L+DE   +L + H+++K SQV +NP GDF+SM+RH SK
Sbjct: 411 MQSFGSQLWDTGFAIQALLASDLSDETDDVLRRGHNYIKKSQVRENPSGDFKSMYRHISK 470

Query: 61  GGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTG 120
           G WT S++DHGW VSDCTAEAL CC+  SM+P ++VG+K++PE+ YD+VN ++S+QS+ G
Sbjct: 471 GAWTLSDRDHGWQVSDCTAEALKCCMLLSMMPADVVGQKIDPEQLYDSVNLLLSLQSENG 530

Query: 121 GVPAWEPRRAPSWLESLNPIEFFDEVIIE 149
           GV AWEP RA  WLE LNP +FF   ++E
Sbjct: 531 GVTAWEPVRAYKWLELLNPTDFFANTMVE 559

Length = 763
>gnl|CDD|166653 PLN03012, PLN03012, Camelliol C synthase Back     alignment and domain information
>gnl|CDD|239222 cd02892, SQCY_1, Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>gnl|CDD|239219 cd02889, SQCY, Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>gnl|CDD|233578 TIGR01787, squalene_cyclas, squalene/oxidosqualene cyclases Back     alignment and domain information
>gnl|CDD|234220 TIGR03463, osq_cycl, 2,3-oxidosqualene cyclase Back     alignment and domain information
>gnl|CDD|224571 COG1657, SqhC, Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>gnl|CDD|233442 TIGR01507, hopene_cyclase, squalene-hopene cyclase Back     alignment and domain information
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 150
PLN02993 763 lupeol synthase 100.0
PLN03012 759 Camelliol C synthase 100.0
TIGR03463 634 osq_cycl 2,3-oxidosqualene cyclase. This model ide 100.0
TIGR01787 621 squalene_cyclas squalene/oxidosqualene cyclases. T 100.0
TIGR01507 635 hopene_cyclase squalene-hopene cyclase. SHC is an 100.0
cd02892 634 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; 100.0
KOG0497 760 consensus Oxidosqualene-lanosterol cyclase and rel 100.0
cd02889 348 SQCY Squalene cyclase (SQCY) domain; found in clas 99.86
COG1657 517 SqhC Squalene cyclase [Lipid metabolism] 99.81
PF13249113 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 99.67
TIGR01507 635 hopene_cyclase squalene-hopene cyclase. SHC is an 99.66
PLN03012759 Camelliol C synthase 99.65
PLN02993763 lupeol synthase 99.61
TIGR03463634 osq_cycl 2,3-oxidosqualene cyclase. This model ide 99.58
TIGR01787621 squalene_cyclas squalene/oxidosqualene cyclases. T 99.51
cd02889348 SQCY Squalene cyclase (SQCY) domain; found in clas 99.43
cd00688 300 ISOPREN_C2_like This group contains class II terpe 99.42
cd02897292 A2M_2 Proteins similar to alpha2-macroglobulin (al 99.37
cd02892634 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; 99.37
PF13243109 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 99.31
cd00688300 ISOPREN_C2_like This group contains class II terpe 99.3
PF13249113 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 99.26
KOG0497760 consensus Oxidosqualene-lanosterol cyclase and rel 99.16
cd02896297 complement_C3_C4_C5 Proteins similar to C3, C4 and 99.15
PF13243109 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 99.03
cd02897 292 A2M_2 Proteins similar to alpha2-macroglobulin (al 98.96
TIGR02474 290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 98.92
cd02896297 complement_C3_C4_C5 Proteins similar to C3, C4 and 98.79
cd02891 282 A2M_like Proteins similar to alpha2-macroglobulin 98.79
cd02891282 A2M_like Proteins similar to alpha2-macroglobulin 98.77
cd02890286 PTase Protein prenyltransferase (PTase) domain, be 98.77
cd02890 286 PTase Protein prenyltransferase (PTase) domain, be 98.76
TIGR02474 290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 98.59
cd02894287 GGTase-II Geranylgeranyltransferase type II (GGTas 98.57
cd02893 299 FTase Protein farnesyltransferase (FTase)_like pro 98.35
cd02893 299 FTase Protein farnesyltransferase (FTase)_like pro 98.28
COG1657517 SqhC Squalene cyclase [Lipid metabolism] 98.28
cd02894287 GGTase-II Geranylgeranyltransferase type II (GGTas 98.26
PF07678246 A2M_comp: A-macroglobulin complement component; In 98.25
PLN03201 316 RAB geranylgeranyl transferase beta-subunit; Provi 98.14
PLN03201 316 RAB geranylgeranyl transferase beta-subunit; Provi 98.07
cd02895307 GGTase-I Geranylgeranyltransferase types I (GGTase 98.04
cd02895 307 GGTase-I Geranylgeranyltransferase types I (GGTase 97.9
PF07678246 A2M_comp: A-macroglobulin complement component; In 97.81
PLN02710 439 farnesyltranstransferase subunit beta 97.8
PLN02710 439 farnesyltranstransferase subunit beta 97.8
PF09492 289 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 97.65
PF09492 289 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 97.51
KOG0366 329 consensus Protein geranylgeranyltransferase type I 97.35
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF0043244 Prenyltrans: Prenyltransferase and squalene oxidas 97.35
COG5029 342 CAL1 Prenyltransferase, beta subunit [Posttranslat 97.24
KOG0365 423 consensus Beta subunit of farnesyltransferase [Pos 97.16
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF0043244 Prenyltrans: Prenyltransferase and squalene oxidas 97.15
COG1689274 Uncharacterized protein conserved in archaea [Func 96.98
PLN02592 800 ent-copalyl diphosphate synthase 96.61
COG5029342 CAL1 Prenyltransferase, beta subunit [Posttranslat 96.25
KOG0367347 consensus Protein geranylgeranyltransferase Type I 95.95
TIGR01577 616 oligosac_amyl oligosaccharide amylase. The name of 95.75
PLN02279 784 ent-kaur-16-ene synthase 95.67
TIGR01535 648 glucan_glucosid glucan 1,4-alpha-glucosidase. Gluc 95.2
PF01122326 Cobalamin_bind: Eukaryotic cobalamin-binding prote 95.0
KOG0366 329 consensus Protein geranylgeranyltransferase type I 93.83
cd00249 384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 93.17
COG1689 274 Uncharacterized protein conserved in archaea [Func 92.67
PF07221 346 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcN 92.6
KOG0365 423 consensus Beta subunit of farnesyltransferase [Pos 91.96
PF01122326 Cobalamin_bind: Eukaryotic cobalamin-binding prote 90.91
TIGR01535 648 glucan_glucosid glucan 1,4-alpha-glucosidase. Gluc 90.62
PLN02592 800 ent-copalyl diphosphate synthase 90.62
PLN02279 784 ent-kaur-16-ene synthase 89.02
TIGR01577 616 oligosac_amyl oligosaccharide amylase. The name of 87.44
KOG1366 1436 consensus Alpha-macroglobulin [Posttranslational m 86.66
KOG0367347 consensus Protein geranylgeranyltransferase Type I 86.48
PF07470336 Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte 85.17
KOG1366 1436 consensus Alpha-macroglobulin [Posttranslational m 80.08
>PLN02993 lupeol synthase Back     alignment and domain information 
Probab=100.00  E-value=6.8e-46  Score=332.60  Aligned_cols=150  Identities=59%  Similarity=1.139  Sum_probs=141.7

Q ss_pred             CCcCCCchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHH
Q 048587            1 MQSFGSQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAE   80 (150)
Q Consensus         1 ~q~~~s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~   80 (150)
                      ||+|+||+|||||+++||+++|+.+++++.|+||++||+++|+.++++|+|..++++.++|||+||+.+++|||+||||+
T Consensus       411 ~q~~gSqvWDTa~a~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sDdTAe  490 (763)
T PLN02993        411 MQSFGSQLWDTGFAIQALLASDLSDETDDVLRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGWQVSDCTAE  490 (763)
T ss_pred             EcCCCCchHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCCCcCCchHH
Confidence            79999999999999999999999766799999999999999999888999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchhhhccChhhhhhhhhhcC
Q 048587           81 ALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEPRRAPSWLESLNPIEFFDEVIIEH  150 (150)
Q Consensus        81 al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~~~~~~~~l~~~~~~e~f~~~~~~~  150 (150)
                      +|+|++++...+.+.+|.++..+++.|||+||++|||+||||++||++|++.|||+|||+|+|+++|+||
T Consensus       491 ~lka~l~l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~  560 (763)
T PLN02993        491 ALKCCMLLSMMPADVVGQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVER  560 (763)
T ss_pred             HHHHHHHHhhCccccccccchHHHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCC
Confidence            9999888876655556778888999999999999999999999999999999999999999999999997

>PLN03012 Camelliol C synthase Back     alignment and domain information
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase Back     alignment and domain information
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases Back     alignment and domain information
>TIGR01507 hopene_cyclase squalene-hopene cyclase Back     alignment and domain information
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>COG1657 SqhC Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C Back     alignment and domain information
>TIGR01507 hopene_cyclase squalene-hopene cyclase Back     alignment and domain information
>PLN03012 Camelliol C synthase Back     alignment and domain information
>PLN02993 lupeol synthase Back     alignment and domain information
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase Back     alignment and domain information
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases Back     alignment and domain information
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A Back     alignment and domain information
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C Back     alignment and domain information
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement Back     alignment and domain information
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A Back     alignment and domain information
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement Back     alignment and domain information
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>COG1657 SqhC Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family Back     alignment and domain information
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family Back     alignment and domain information
>PLN02710 farnesyltranstransferase subunit beta Back     alignment and domain information
>PLN02710 farnesyltranstransferase subunit beta Back     alignment and domain information
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4 Back     alignment and domain information
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4 Back     alignment and domain information
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family Back     alignment and domain information
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family Back     alignment and domain information
>COG1689 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01577 oligosac_amyl oligosaccharide amylase Back     alignment and domain information
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase Back     alignment and domain information
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals Back     alignment and domain information
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>COG1689 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5 Back     alignment and domain information
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals Back     alignment and domain information
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>TIGR01577 oligosac_amyl oligosaccharide amylase Back     alignment and domain information
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [] Back     alignment and domain information
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query150
1w6k_A 732 Structure Of Human Osc In Complex With Lanosterol L 5e-28
1w6j_A 732 Structure Of Human Osc In Complex With Ro 48-8071 L 5e-28
>pdb|1W6K|A Chain A, Structure Of Human Osc In Complex With Lanosterol Length = 732 Back     alignment and structure 
Iteration: 1

 Score =  119 bits (299), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 66/148 (44%), Positives = 89/148 (60%), Gaps = 4/148 (2%)
Query: 5   GSQTWDCAFAVQALLAC--NLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGG 62
           GSQ WD AFA+QALL    +   E    L KAH+FL+ SQV DNPP D++  +R   KGG
Sbjct: 383 GSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNPP-DYQKYYRQMRKGG 441
Query: 63  WTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGV 122
           ++FS  D GW VSDCTAEAL   L      P +  E +  ER  DAV  +++M++  GG 
Sbjct: 442 FSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVT-EHIPRERLCDAVAVLLNMRNPDGGF 500
Query: 123 PAWEPRRAPSWLESLNPIEFFDEVIIEH 150
             +E +R    LE LNP E F +++I++
Sbjct: 501 ATYETKRGGHLLELLNPSEVFGDIMIDY 528
>pdb|1W6J|A Chain A, Structure Of Human Osc In Complex With Ro 48-8071 Length = 732 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query150
1w6k_A 732 Lanosterol synthase; cyclase, cholesterol, monotop 1e-41
2sqc_A 631 Squalene-hopene cyclase; isomerase, triterpene cyc 4e-34
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Length = 732 Back     alignment and structure
 Score =  146 bits (368), Expect = 1e-41
 Identities = 65/152 (42%), Positives = 89/152 (58%), Gaps = 4/152 (2%)

Query: 1   MQSFGSQTWDCAFAVQALLAC--NLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHT 58
             + GSQ WD AFA+QALL    +   E    L KAH+FL+ SQV DNP  D++  +R  
Sbjct: 379 QGTNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNP-PDYQKYYRQM 437

Query: 59  SKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQ 118
            KGG++FS  D GW VSDCTAEAL   L      P +  E +  ER  DAV  +++M++ 
Sbjct: 438 RKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHV-TEHIPRERLCDAVAVLLNMRNP 496

Query: 119 TGGVPAWEPRRAPSWLESLNPIEFFDEVIIEH 150
            GG   +E +R    LE LNP E F +++I++
Sbjct: 497 DGGFATYETKRGGHLLELLNPSEVFGDIMIDY 528
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query150
1w6k_A 732 Lanosterol synthase; cyclase, cholesterol, monotop 99.97
2sqc_A 631 Squalene-hopene cyclase; isomerase, triterpene cyc 99.95
2sqc_A 631 Squalene-hopene cyclase; isomerase, triterpene cyc 99.65
1r76_A 408 Pectate lyase; A-helical structure; 2.65A {Azospir 99.58
1gxm_A 332 Pectate lyase; mechanism, elimination; 1.32A {Cell 99.56
1w6k_A732 Lanosterol synthase; cyclase, cholesterol, monotop 99.34
1gxm_A 332 Pectate lyase; mechanism, elimination; 1.32A {Cell 99.26
2h6f_B 437 Protein farnesyltransferase beta subunit; ftase, f 99.17
1r76_A 408 Pectate lyase; A-helical structure; 2.65A {Azospir 99.16
2h6f_B 437 Protein farnesyltransferase beta subunit; ftase, f 99.11
1n4q_B 377 Geranyltransferase type-I beta subunit; protein ge 99.06
3dss_B 331 Geranylgeranyl transferase type-2 subunit beta; pr 99.03
3q7a_B 520 Farnesyltransferase beta subunit; protein prenyltr 98.93
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 98.92
1qqf_A277 Protein (complement C3DG); alpha-alpha barrel, imm 98.88
2wy7_A310 Complement C3D fragment; immune system, immune res 98.84
1hzf_A 367 Complement factor C4A; alpha-alpha 6 barrel, immun 98.81
1qqf_A 277 Protein (complement C3DG); alpha-alpha barrel, imm 98.7
2wy7_A 310 Complement C3D fragment; immune system, immune res 98.66
1hzf_A 367 Complement factor C4A; alpha-alpha 6 barrel, immun 98.64
1n4q_B 377 Geranyltransferase type-I beta subunit; protein ge 98.49
3q7a_B 520 Farnesyltransferase beta subunit; protein prenyltr 98.49
2bb6_A 414 TCII, TC II, transcobalamin II; alpha_6 - alpha_6 98.4
4acq_A 1451 Alpha-2-macroglobulin; hydrolase inhibitor, protei 98.36
2bb6_A 414 TCII, TC II, transcobalamin II; alpha_6 - alpha_6 98.36
4acq_A 1451 Alpha-2-macroglobulin; hydrolase inhibitor, protei 98.16
2hr0_B 915 Complement C3 alpha' chain; complement component C 98.15
2pmv_A 399 Gastric intrinsic factor; cobalamin transport prot 98.02
2pn5_A 1325 TEP1R, thioester-containing protein I; FULL-length 97.97
2pn5_A 1325 TEP1R, thioester-containing protein I; FULL-length 97.92
2hr0_B 915 Complement C3 alpha' chain; complement component C 97.89
2pmv_A 399 Gastric intrinsic factor; cobalamin transport prot 97.62
3dra_B 390 Geranylgeranyltransferase type I beta subunit; ger 97.1
4fxk_B 767 Complement C4-A alpha chain; immune system, proteo 96.85
3dra_B 390 Geranylgeranyltransferase type I beta subunit; ger 96.84
4fxk_B 767 Complement C4-A alpha chain; immune system, proteo 96.74
2b39_A 1661 C3; thioester, immune defense, immune system; HET: 96.74
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 96.7
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 96.64
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 96.56
3prx_B 1642 Cobra venom factor; immune system, complement, imm 96.55
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 96.53
3cu7_A 1676 Complement C5; Mg domain, inflammation, anaphylato 96.07
2b39_A 1661 C3; thioester, immune defense, immune system; HET: 95.89
3cu7_A 1676 Complement C5; Mg domain, inflammation, anaphylato 95.74
3prx_B 1642 Cobra venom factor; immune system, complement, imm 95.22
1ulv_A 1020 Glucodextranase; GH family 15, (alpha-alpha)6-barr 92.51
3gt5_A 402 N-acetylglucosamine 2-epimerase; structural genomi 92.28
1lf6_A 684 Glucoamylase; (alpha/alpha) barrel, 6 alpha-helica 91.73
2gz6_A 388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 91.33
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 90.62
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 90.33
2zbl_A 421 Putative isomerase; N-acyl-D-glucosamine 2-epimera 90.24
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 90.02
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 89.69
3k11_A 445 Putative glycosyl hydrolase; structural genomics, 87.39
1nc5_A373 Hypothetical protein YTER; structural genomics, he 87.0
1lf6_A 684 Glucoamylase; (alpha/alpha) barrel, 6 alpha-helica 86.46
2ahf_A377 Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba 85.78
3pmm_A382 Putative cytoplasmic protein; structural genomics, 85.34
2vn4_A 599 Glucoamylase; hydrolase, carbohydrate binding, gly 85.01
1fp3_A 402 N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barr 84.13
3k11_A445 Putative glycosyl hydrolase; structural genomics, 81.75
1wgn_A63 UBAP1, ubiquitin associated protein; ubiquitin ass 80.59
1vg5_A73 RSGI RUH-014, rhomboid family protein; UBA domain, 80.52
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Back     alignment and structure
Probab=99.97  E-value=2e-31  Score=239.13  Aligned_cols=148  Identities=46%  Similarity=0.758  Sum_probs=131.3

Q ss_pred             CCcC-CCchhHHHHHHHHHHHcCCCC--CccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccc
Q 048587            1 MQSF-GSQTWDCAFAVQALLACNLTD--EIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDC   77 (150)
Q Consensus         1 ~q~~-~s~~wdTala~~AL~~aG~~~--~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~   77 (150)
                      +|+| ||++|||+|+++||.++|.+.  ++.+.++||++||+++|++++ +|+|...+++.++|||+|++.++++||+|+
T Consensus       378 ~q~~~gs~vwdTalal~AL~~ag~~~~~~~~~~l~ka~~~L~~~Q~~~~-~~d~~~~~r~~~~GGW~f~~~~~~~pd~d~  456 (732)
T 1w6k_A          378 MQGTNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDN-PPDYQKYYRQMRKGGFSFSTLDCGWIVSDC  456 (732)
T ss_dssp             ECSSSCCHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCC-CTTGGGGTCCCCTTCCBSSCTTTCCBCHHH
T ss_pred             eCCCCCCchHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHHhccccc-CCcccccccCCCCCeecCCCCCCCCCcccc
Confidence            5889 799999999999999999864  468899999999999998753 688888899999999999999999999999


Q ss_pred             hHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchhhhccChhhhhhhhhhcC
Q 048587           78 TAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEPRRAPSWLESLNPIEFFDEVIIEH  150 (150)
Q Consensus        78 Ta~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~~~~~~~~l~~~~~~e~f~~~~~~~  150 (150)
                      |+++|++|..+...+. ..|.++..+++++|++||+++||+||||++|+++++..||+++||+|.|+++|+|+
T Consensus       457 TA~vl~aL~~~~~~~~-~~g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~  528 (732)
T 1w6k_A          457 TAEALKAVLLLQEKCP-HVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDY  528 (732)
T ss_dssp             HHHHHHHHHHHHHHCT-TCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCC
T ss_pred             HHHHHHHHHHHhcccc-cccchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCC
Confidence            9999999998864221 12446788999999999999999999999999999999999999999999988873
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Back     alignment and structure
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Back     alignment and structure
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Back     alignment and structure
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* Back     alignment and structure
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A Back     alignment and structure
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A Back     alignment and structure
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 Back     alignment and structure
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A Back     alignment and structure
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A Back     alignment and structure
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 Back     alignment and structure
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Back     alignment and structure
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* Back     alignment and structure
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens} Back     alignment and structure
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* Back     alignment and structure
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens} Back     alignment and structure
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ... Back     alignment and structure
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A* Back     alignment and structure
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} Back     alignment and structure
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} Back     alignment and structure
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ... Back     alignment and structure
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A* Back     alignment and structure
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B* Back     alignment and structure
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B* Back     alignment and structure
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A Back     alignment and structure
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} Back     alignment and structure
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A Back     alignment and structure
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B* Back     alignment and structure
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A* Back     alignment and structure
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Back     alignment and structure
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A* Back     alignment and structure
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* Back     alignment and structure
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A* Back     alignment and structure
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A* Back     alignment and structure
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3 Back     alignment and structure
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 150
d1w6ka1 448 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase { 8e-53
d2sqca1 352 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cycla 1e-38
d1gxma_ 324 a.102.5.1 (A:) Polygalacturonic acid lyase (pectat 2e-04
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 448 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  171 bits (433), Expect = 8e-53
 Identities = 66/152 (43%), Positives = 89/152 (58%), Gaps = 4/152 (2%)

Query: 1   MQSFGSQTWDCAFAVQALLAC--NLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHT 58
             + GSQ WD AFA+QALL    +   E    L KAH+FL+ SQV DNP  D++  +R  
Sbjct: 95  QGTNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNP-PDYQKYYRQM 153

Query: 59  SKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQ 118
            KGG++FS  D GW VSDCTAEAL   L      P  V E +  ER  DAV  +++M++ 
Sbjct: 154 RKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPH-VTEHIPRERLCDAVAVLLNMRNP 212

Query: 119 TGGVPAWEPRRAPSWLESLNPIEFFDEVIIEH 150
            GG   +E +R    LE LNP E F +++I++
Sbjct: 213 DGGFATYETKRGGHLLELLNPSEVFGDIMIDY 244
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 352 Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Length = 324 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query150
d1w6ka1 448 Lanosterol synthase {Human (Homo sapiens) [TaxId: 100.0
d2sqca1 352 Squalene-hopene cyclase {Alicyclobacillus acidocal 100.0
d2sqca1352 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.69
d1w6ka1448 Lanosterol synthase {Human (Homo sapiens) [TaxId: 99.65
d1gxma_ 324 Polygalacturonic acid lyase (pectate lyase) {Cellv 99.41
d2sqca2 271 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.17
d1r76a_ 408 Polygalacturonic acid lyase (pectate lyase) {Azosp 99.02
d2sqca2271 Squalene-hopene cyclase {Alicyclobacillus acidocal 98.71
d3dssb1 325 Rab geranylgeranyltransferase, beta subunit {Rat ( 98.68
d1r76a_ 408 Polygalacturonic acid lyase (pectate lyase) {Azosp 98.67
d1gxma_ 324 Polygalacturonic acid lyase (pectate lyase) {Cellv 98.6
d2h6fb1 401 Protein farnesyltransferase, beta-subunit {Human ( 98.41
d1w6ka2 279 Lanosterol synthase {Human (Homo sapiens) [TaxId: 98.4
d2h6fb1 401 Protein farnesyltransferase, beta-subunit {Human ( 98.37
d3dssb1325 Rab geranylgeranyltransferase, beta subunit {Rat ( 98.16
d1n4qb_ 346 Protein farnesyltransferase, beta-subunit {Rat (Ra 98.05
d1c3da_294 C3D, a C3 fragment and ligand for complement recep 97.51
d1hzfa_ 326 C4adg fragment of complement factor C4a {Human (Ho 97.5
d1w6ka2 279 Lanosterol synthase {Human (Homo sapiens) [TaxId: 97.23
d1hzfa_326 C4adg fragment of complement factor C4a {Human (Ho 97.08
d1c3da_ 294 C3D, a C3 fragment and ligand for complement recep 96.93
d1ulva1 413 Glucodextranase, domain A {Arthrobacter globiformi 96.89
d1lf6a1 397 Bacterial glucoamylase, C-terminal domain {Thermoa 96.63
d1n4qb_346 Protein farnesyltransferase, beta-subunit {Rat (Ra 96.56
d1fp3a_ 402 N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) 94.16
d1lf6a1 397 Bacterial glucoamylase, C-terminal domain {Thermoa 91.61
d1vg5a_73 Rhomboid family protein At3g58460 {Thale cress (Ar 84.54
d1wjia_63 Tudor domain containing protein 3, TDRD3 {Human (H 82.36
d2afaa1 411 Putative NAG isomerase YihS {Salmonella typhimuriu 81.24
d1wiva_73 Ubiquitin isopeptidase T {Thale cress (Arabidopsis 80.74
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-40  Score=281.21  Aligned_cols=148  Identities=45%  Similarity=0.720  Sum_probs=134.1

Q ss_pred             CCcC-CCchhHHHHHHHHHHHcCC--CCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccc
Q 048587            1 MQSF-GSQTWDCAFAVQALLACNL--TDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDC   77 (150)
Q Consensus         1 ~q~~-~s~~wdTala~~AL~~aG~--~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~   77 (150)
                      +|+| +||||||+|+++||+++|.  .+++++.|+||++||+.+|+.++ +|+|..++++..+|||+|++.+++|||+||
T Consensus        94 ~~~~~~S~vWDTal~~~AL~~ag~~~~~~~~~~l~kA~~wL~~~Q~~~~-~gd~~~~~~~~~~GGW~f~~~n~~~Pd~Dd  172 (448)
T d1w6ka1          94 GQGTNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDN-PPDYQKYYRQMRKGGFSFSTLDCGWIVSDC  172 (448)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCC-CTTGGGGTCCCCTTCCBSSCTTTCCBCHHH
T ss_pred             cCCCCCCChHHHHHHHHHHHHhCCCCCccchHHHHHHHHHHHhhccCcC-CCcchhhcCCCCCCceeCCcCCCCCCCCcc
Confidence            4677 8999999999999999996  34578999999999999999864 789999999999999999999999999999


Q ss_pred             hHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchhhhccChhhhhhhhhhcC
Q 048587           78 TAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEPRRAPSWLESLNPIEFFDEVIIEH  150 (150)
Q Consensus        78 Ta~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~~~~~~~~l~~~~~~e~f~~~~~~~  150 (150)
                      ||++|+||+++.... ...++++.+++|.|||+||++|||+||||++|++++++.|||.+||+++|+++|+|+
T Consensus       173 TA~~l~al~~~~~~~-~~~~~~~~~~~i~~av~wLl~mQn~dGGw~afd~~~~~~~l~~~~~~~~~~~~~~D~  244 (448)
T d1w6ka1         173 TAEALKAVLLLQEKC-PHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDY  244 (448)
T ss_dssp             HHHHHHHHHHHHHHC-TTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCC
T ss_pred             HHHHHHHHHHHhccC-ccccccccHHHHHHHHHHHHHhcCCCCCeeeccCCCChhhhhcccchhhhhccccCC
Confidence            999999998875322 134667889999999999999999999999999999999999999999999999985
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Back     information, alignment and structure
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ulva1 a.102.1.5 (A:274-686) Glucodextranase, domain A {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal domain {Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]} Back     information, alignment and structure
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal domain {Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]} Back     information, alignment and structure
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure