Citrus Sinensis ID: 048602

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170------
Protein Sequence
MLSMALMLSAAFFMGCTNLAVANYGDASAGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRIINGKELKAKLCSVRLVSSTHADCSIATNFAGGKTGVKLMRSPTSMFRDIIKYRVGPFYYTTPMCEKPDTNDSQSDEDQGSYY
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEcccccccccccccccccccccEEEEEcccccccEEEEEEEEcccccEEEEEEccEEccccccccccEEEEccccccccccccccccccccccEEccccccccccEEEEEEccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEEEccccccccccccccccccccEEEEEEEccccEEEEEEEEEcccccEEEEEEccEEccccccccEEEEEEEEcccccccccccccccccccccccccccccccEEEEEEccEEEccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MLSMALMLSAAFFMGCTNLAVAnygdasagvihVGGQVLCQNCFKSYKewvngsnplkgvTVSLTcmddrsramcyksdetdeqgqfYMTVDRIINGKELKAKLCSVRlvssthadcsiatnfaggktgvklmrsptsmfrdiikyrvgpfyyttpmcekpdtndsqsdedqgsyy
Flexible Loop (DISEMBL)
MLSMALMLSAAFFMGCTNLAVANYGDASAGVIHVGGQVLCQNCFKSYKEwvngsnplkgVTVSLTCMDDRSRAMcyksdetdeqgqfyMTVDRIINGKELKAKLCSVRLVSsthadcsiatnfaggktgvklmrsptsmfRDIIKYRVGPFYYttpmcekpdtndsqsdedqgsyy
Low Complexity Region (SEG)
MLSMALMLSAAFFMGCTNLAVANYGDASAGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRIINGKELKAKLCSVRLVSSTHADCSIATNFAGGKTGVKLMRSPTSMFRDIIKYRVGPFYYTTPMCEKPDTNDSQSDEDQGSYY
Disordered region (IsUnstruct)
****ALMLSAAFFMGCTNLAVANYGDASAGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRIINGKELKAKLCSVRLVSSTHADCSIATNFAGGKTGVKLMRSPTSMFRDIIKYRVGPFYYTTPMC******************
Disordered Region (DISOPRED)
*LSMALMLSAAFFMGCTNLAVANYGDASAGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRIINGKELKAKLCSVRLVSSTHADCSIATNFA****************RDIIKYRVGPFYYTTPM*******************
Disordered Region (DISEMBL)
MLSMALMLSAAFFMGCTNLAVANYGDASAGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRIINGKELKAKLCSVRLVSSTHADCSIATNFAGGKTGVKLMRSPTSMFRDIIKYRVGPFYYTTPMCEK****************
Disordered Region (DISPRO)
MLSMALMLSAAFFMGCTNLAVANYGDASAGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRIINGKELKAKLCSVRLVSSTHADCSIATNFAGGKTGVKLMRSPTSMFRDIIKYRVGPFYYTTPMCE*****************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLSMALMLSAAFFMGCTNLAVANYGDASAGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRIINGKELKAKLCSVRLVSSTHADCSIATNFAGGKTGVKLMRSPTSMFRDIIKYRVGPFYYTTPMCEKPDTNDSQSDEDQGSYY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	176	2.2.26 [Sep-21-2011]
Q9FZ35	335	Proline-rich protein 1 OS	no	no	0.579	0.304	0.310	2e-07
Q9LZJ7	313	Proline-rich protein 3 OS	no	no	0.619	0.348	0.312	6e-06
Q03211	426	Pistil-specific extensin-	N/A	no	0.636	0.262	0.293	0.0002

>sp|Q9FZ35|PRP1_ARATH Proline-rich protein 1 OS=Arabidopsis thaliana GN=PRP1 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 27/129 (20%)

Query: 34  VGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMD------DRSRAMCYKSDETDEQGQF 87
           VGG +LC+N +++Y        P++G    + C +       ++  + Y SD TD +G F
Sbjct: 214 VGGIILCKNGYETY--------PIQGAKAKIVCSERGSYEKSKNEVVIY-SDPTDFKGYF 264

Query: 88  YMTVDRIINGKELKAKLCSVRLVSSTHADCSIATNFAGGKTGVKLMRSPTSMFRD--IIK 145
           ++ +  I N        C V+L +S    C   TN   G TGV     P SM+ D  +  
Sbjct: 265 HVVLTHIKNLSN-----CRVKLYTSPVETCKNPTNVNKGLTGV-----PFSMYSDKNLKL 314

Query: 146 YRVGPFYYT 154
           + VGPFY+T
Sbjct: 315 FNVGPFYFT 323

May contribute to cell wall structure in root hairs.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZJ7|PRP3_ARATH Proline-rich protein 3 OS=Arabidopsis thaliana GN=PRP3 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 22/131 (16%)

Query: 34  VGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRS------RAMCYKSDETDEQGQF 87
           V G +LC+N +++Y        P+ G  + + C D  S        + Y S+ TD +G F
Sbjct: 188 VDGIILCKNGYETY--------PILGAKIQIVCSDPASYGKSNTEVVIY-SNPTDSKGYF 238

Query: 88  YMTVDRIINGKELKAKLCSVRLVSSTHADCSIATNFAGGKTGVKLMRSPTSMFRD--IIK 145
           ++++  I   K+L    C V+L  S    C   TN   G TGV L       + D  +  
Sbjct: 239 HLSLTSI---KDLA--YCRVKLYLSPVETCKNPTNVNKGLTGVPLALYGYRFYPDKNLEL 293

Query: 146 YRVGPFYYTTP 156
           + VGPFYYT P
Sbjct: 294 FSVGPFYYTGP 304

May contribute to cell wall structure in root hairs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q03211|PEXLP_TOBAC Pistil-specific extensin-like protein OS=Nicotiana tabacum PE=2 SV=1

 Score = 45.8 bits (107), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 21/133 (15%)

Query: 34  VGGQVLCQNCFKSY--KEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTV 91
           V G V C++C  SY     +N S  L+G  V L C   ++     +   TD +G+F +  
Sbjct: 291 VSGLVYCKSC-NSYGVPTLLNASL-LQGAVVKLICYGKKTMV---QWATTDNKGEFRIMP 345

Query: 92  DRIINGKELKAKLCSVRLVSSTHADCSIATNFAGGKTG--VKLMRSPTSMFRDII----- 144
             +      K   C V LV S + +C++ TNF GGK+G  +K +  P       +     
Sbjct: 346 KSLTTADVGK---CKVYLVKSPNPNCNVPTNFNGGKSGGLLKPLLPPKQPITPAVVPVQP 402

Query: 145 ----KYRVGPFYY 153
                Y VGPF +
Sbjct: 403 PMSDLYGVGPFIF 415

Nicotiana tabacum (taxid: 4097)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
255556806	169	conserved hypothetical protein [Ricinus	0.863	0.899	0.645	7e-51
224069703	173	predicted protein [Populus trichocarpa]	0.943	0.959	0.552	4e-48
449440443	158	PREDICTED: uncharacterized protein LOC10	0.897	1.0	0.529	8e-45
356505291	176	PREDICTED: pistil-specific extensin-like	0.943	0.943	0.548	3e-44
297833766	171	pollen ole e 1 allergen and extensin fam	0.897	0.923	0.512	1e-43
351724337	175	uncharacterized protein LOC100527270 pre	0.914	0.92	0.535	2e-43
22330940	171	pollen Ole e 1 allergen and extensin fam	0.875	0.900	0.524	1e-42
357510897	182	Pistil-specific extensin-like protein [M	0.988	0.956	0.508	3e-42
115483240	168	Os10g0546100 [Oryza sativa Japonica Grou	0.789	0.827	0.368	1e-18
297740015	134	unnamed protein product [Vitis vinifera]	0.392	0.514	0.619	6e-18

>gi|255556806|ref|XP_002519436.1| conserved hypothetical protein [Ricinus communis] gi|223541299|gb|EEF42850.1| conserved hypothetical protein [Ricinus communis]

 Score =  205 bits (521), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 104/161 (64%), Positives = 125/161 (77%), Gaps = 9/161 (5%)

Query: 16  CTNLAVANYGDASAGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMC 75
           CTNLAVA  G    GVIHVGG+V+CQ+C K Y +WVNG  P+KG  VSLTCMD+R R M 
Sbjct: 18  CTNLAVAWEG---TGVIHVGGKVMCQDCTKGYHDWVNGDRPIKGCKVSLTCMDERRRVMY 74

Query: 76  YKSDETDEQGQFYMTVDRIINGKELKAKLCSVRLVSSTHADCSIATNFAGGKTGVKLMRS 135
           Y+SD TDE+GQF MTV + INGKELK KLCSVRLVSS    C+I T+FAGGK+GVKL R 
Sbjct: 75  YESDITDEEGQFDMTVSKYINGKELKEKLCSVRLVSSPDQTCNILTDFAGGKSGVKL-RR 133

Query: 136 PTSMFRDIIKYRVGPFYYTTPMCEKPDTNDSQSDEDQGSYY 176
           PT ++RD++KY + PFY+TTPMCE+PDT  SQSD   G++Y
Sbjct: 134 PTLIYRDMVKYMLQPFYFTTPMCEEPDT--SQSD---GTHY 169

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069703|ref|XP_002326398.1| predicted protein [Populus trichocarpa] gi|222833591|gb|EEE72068.1| predicted protein [Populus trichocarpa]

 Score =  196 bits (497), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 94/170 (55%), Positives = 126/170 (74%), Gaps = 4/170 (2%)

Query: 7   MLSAAFFMGCTNLAVANYGDASAGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTC 66
           +++A+  +GCT LA+A   + + GVI+V G+V+CQ+C K Y +W+NG  P+KG  V LTC
Sbjct: 8   LIAASLLVGCTTLAMA--WEETYGVINVAGKVMCQDCTKGYNDWINGDRPIKGSKVCLTC 65

Query: 67  MDDRSRAMCYKSDETDEQGQFYMTVDRIINGKELKAKLCSVRLVSSTHADCSIATNFAGG 126
            DDR R + Y SD TDE+G+F M V + INGK+LK K CSVRLVSS    C+I T+FAGG
Sbjct: 66  TDDRGRVIHYDSDVTDERGEFDMIVSKYINGKQLKEKKCSVRLVSSPDPSCNILTDFAGG 125

Query: 127 KTGVKLMRSPTSMFRDIIKYRVGPFYYTTPMCEKPDTNDSQSDEDQGSYY 176
           K+GVKL R PTS++RD +KY + PFY+T+PMCE+PDT D Q D+ QG+ Y
Sbjct: 126 KSGVKLKR-PTSVYRDTVKYMLTPFYFTSPMCEEPDTTD-QYDDTQGNNY 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440443|ref|XP_004137994.1| PREDICTED: uncharacterized protein LOC101220111 [Cucumis sativus] gi|449521215|ref|XP_004167625.1| PREDICTED: uncharacterized protein LOC101225099 [Cucumis sativus]

 Score =  185 bits (469), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 89/168 (52%), Positives = 125/168 (74%), Gaps = 10/168 (5%)

Query: 8   LSAAFFMGCTNLAVANYGDASAGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCM 67
           ++A+  +GC N+  A  GD    VIH+GG+VLCQ+C + + EW+NG  PLK   VS+TC+
Sbjct: 1   MAASLLIGCINIVAA--GD----VIHIGGKVLCQDCTQGWNEWINGK-PLKDCKVSVTCL 53

Query: 68  DDRSRAMCYKSDETDEQGQFYMTVDRIINGKELKAKLCSVRLVSSTHADCSIATNFAGGK 127
           D+RSR M Y SD TDE GQF +T+++ INGK+L  K CSVRLVSS    C++ T+FAGG+
Sbjct: 54  DERSRVMHYASDLTDELGQFDITINKFINGKKLNPKKCSVRLVSSPDLACNVMTDFAGGR 113

Query: 128 TGVKLMRSPTSMFRDIIKYRVGPFYYTTPMCEKPDTNDSQSDEDQGSY 175
           +GV+L R P+ ++RD++KY +GPFY+T+PMCE+PDT  S SD++ G Y
Sbjct: 114 SGVQL-RGPSLVYRDLVKYVLGPFYFTSPMCEEPDT--SGSDDNDGKY 158

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505291|ref|XP_003521425.1| PREDICTED: pistil-specific extensin-like protein-like [Glycine max]

 Score =  183 bits (464), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 97/177 (54%), Positives = 124/177 (70%), Gaps = 11/177 (6%)

Query: 5   ALMLSAAFFMGCTNLAVANYGDASAGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSL 64
           ALM+  A  + C + A+       +GVI+VGG+V CQ+C K + EWVNG NP+KGV VSL
Sbjct: 6   ALMIIIASMIVCCSSALD-----ESGVIYVGGKVQCQDCTKGWNEWVNGGNPMKGVKVSL 60

Query: 65  TCMDDRSRAMCYKSDETDEQGQFYMTVDRIINGKELKAKLCSVRLVSSTHADCSIATNFA 124
           TCMD RSR + Y SD TDE GQ+ +TV + + GKEL  K CSVRLVSS+   C+I T+F 
Sbjct: 61  TCMDKRSRVVYYTSDTTDELGQYDLTVKKYVYGKELDTKGCSVRLVSSSDNVCNILTDFG 120

Query: 125 GGKTGVKLMRSPTSMFRDIIKYRVGPFYYTTPMCEKPDT---NDS--QSDEDQGSYY 176
           GGK+GVKL   PTS++R +IKY + PFYYTTPMC+KPDT   +DS   + + QG YY
Sbjct: 121 GGKSGVKL-NYPTSVYRSLIKYVLNPFYYTTPMCDKPDTDGYDDSGPNNPQGQGGYY 176

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833766|ref|XP_002884765.1| pollen ole e 1 allergen and extensin family protein [Arabidopsis lyrata subsp. lyrata] gi|297330605|gb|EFH61024.1| pollen ole e 1 allergen and extensin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 82/160 (51%), Positives = 112/160 (70%), Gaps = 2/160 (1%)

Query: 3   SMALMLSAAFFMGCTNLAVANYGDASAGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTV 62
           ++ L++   F + C         D    VIHV G+V+CQ+C  +Y EW+NGS P+KG  V
Sbjct: 7   TLVLLIEILFLVSCVTHITTVAADNDGDVIHVAGKVMCQDCSLNYDEWINGSEPIKGAVV 66

Query: 63  SLTCMDDRSRAMCYKSDETDEQGQFYMTVDRII-NGKELKAKLCSVRLVSSTHADCSIAT 121
           S+TCMD+R R   Y SD+TDE+GQF + V++++  GK+LK +LC+VRLVSS    C+I T
Sbjct: 67  SITCMDERRRVRYYGSDKTDERGQFDLIVNKVLYGGKDLKPQLCNVRLVSSPDQSCNIPT 126

Query: 122 NFAGGKTGVKLMRSPTSMFRDIIKYRVGPFYYTTPMCEKP 161
           NF  G+TGVKL+R P  +F+D++KY VGPFYYTTPMCE P
Sbjct: 127 NFGNGQTGVKLVR-PFMVFKDLVKYVVGPFYYTTPMCETP 165

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724337|ref|NP_001237310.1| uncharacterized protein LOC100527270 precursor [Glycine max] gi|255631922|gb|ACU16328.1| unknown [Glycine max]

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 91/170 (53%), Positives = 119/170 (70%), Gaps = 9/170 (5%)

Query: 6   LMLSAAFFMGCTNLAVANYGDASAGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLT 65
           +++ A+  +GC++          +GVI+VGG+VLCQ+C K + EWVN   P+KGV VSLT
Sbjct: 8   MIIIASMLVGCSSAL------DESGVIYVGGKVLCQDCTKGWNEWVNDGKPMKGVKVSLT 61

Query: 66  CMDDRSRAMCYKSDETDEQGQFYMTVDRIINGKELKAKLCSVRLVSSTHADCSIATNFAG 125
           CMD RSR + Y SD TDE GQ+ +TV + + GKEL  K CSVRLVSS    C+I T+F G
Sbjct: 62  CMDKRSRVVYYTSDTTDELGQYDLTVKKYVYGKELDTKGCSVRLVSSPDNVCNILTDFGG 121

Query: 126 GKTGVKLMRSPTSMFRDIIKYRVGPFYYTTPMCEKPDTN--DSQSDEDQG 173
           GK+GVKL   PTS++R +IKY + PFYYTTPMC+KPDT+  DS+    QG
Sbjct: 122 GKSGVKL-NYPTSVYRSLIKYVLNPFYYTTPMCDKPDTDGYDSEPKNRQG 170

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22330940|ref|NP_683542.1| pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana] gi|332641315|gb|AEE74836.1| pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana]

 Score =  177 bits (449), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 86/164 (52%), Positives = 115/164 (70%), Gaps = 10/164 (6%)

Query: 3   SMALMLSAAFFMGC----TNLAVANYGDASAGVIHVGGQVLCQNCFKSYKEWVNGSNPLK 58
           ++ L++   F + C    T  A  N GD     IHV G+V+CQ+C  +Y EW+NGS P+K
Sbjct: 7   TLVLLIEILFLVSCVTHITTTAAYNNGDK----IHVAGKVMCQDCSLNYDEWINGSEPIK 62

Query: 59  GVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRII-NGKELKAKLCSVRLVSSTHADC 117
           G  VS+TCMD+R R   Y SD TDE+GQF + V++++ +GK LK +LC+VRLVSS    C
Sbjct: 63  GAVVSITCMDERRRVSYYGSDLTDERGQFDLMVNKVLSHGKVLKPQLCNVRLVSSPDLSC 122

Query: 118 SIATNFAGGKTGVKLMRSPTSMFRDIIKYRVGPFYYTTPMCEKP 161
           +I TNF  G+TGVKL+R P ++FRD++KY VGPFYYTTPMCE P
Sbjct: 123 NIPTNFGNGQTGVKLVR-PFTVFRDLVKYVVGPFYYTTPMCETP 165

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357510897|ref|XP_003625737.1| Pistil-specific extensin-like protein [Medicago truncatula] gi|355500752|gb|AES81955.1| Pistil-specific extensin-like protein [Medicago truncatula]

 Score =  176 bits (446), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 92/181 (50%), Positives = 118/181 (65%), Gaps = 7/181 (3%)

Query: 2   LSMALMLSAAFFMGCTNLAVANYGDASAGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVT 61
            ++ALM++A      TN  + +  +  A VIHV G+VLCQ+C K + EWV+G  P+KG  
Sbjct: 3   FAIALMITAMVVCCTTNSILVSAWEEPAQVIHVVGKVLCQDCSKGWNEWVSGDKPIKGAK 62

Query: 62  VSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRIINGKELKAKLCSVRLVSSTHADCSIAT 121
           VSLTCMD R+R M Y SD TDE G + +TVD+   GK+L  K C VRLVSS    C+I T
Sbjct: 63  VSLTCMDKRNRVMYYTSDTTDELGLYDITVDKYKYGKKLDTKGCYVRLVSSPDNVCNILT 122

Query: 122 NFAGGKTGVKLMRSPTSMFRDIIKYRVGPFYYTTPMCEKPDTNDSQS------DEDQGSY 175
           +F GGK G KL   PTS++R +IKY V PFYYTTPMCE PDT+  +S      +E +G Y
Sbjct: 123 DFGGGKAGYKL-NYPTSVYRGLIKYMVTPFYYTTPMCEMPDTDTYESEAKVPKEEREGGY 181

Query: 176 Y 176
           Y
Sbjct: 182 Y 182

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115483240|ref|NP_001065213.1| Os10g0546100 [Oryza sativa Japonica Group] gi|13357245|gb|AAK20042.1|AC025783_2 putative pollen-related protein [Oryza sativa Japonica Group] gi|31433368|gb|AAP54887.1| Pollen proteins Ole e I family protein [Oryza sativa Japonica Group] gi|113639822|dbj|BAF27127.1| Os10g0546100 [Oryza sativa Japonica Group] gi|125532846|gb|EAY79411.1| hypothetical protein OsI_34543 [Oryza sativa Indica Group] gi|125575588|gb|EAZ16872.1| hypothetical protein OsJ_32350 [Oryza sativa Japonica Group] gi|215768694|dbj|BAH00923.1| unnamed protein product [Oryza sativa Japonica Group]

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/144 (36%), Positives = 78/144 (54%), Gaps = 5/144 (3%)

Query: 20  AVANYGDASAGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRS-RAMCYKS 78
           A  NYG A      V G VLCQ+C KS+  +   + P+ G  V +TC+D  + R + + +
Sbjct: 25  AWHNYGAAK---FTVTGSVLCQDCTKSWNAYAYNAKPIPGSMVGITCLDKETGRTVYHGT 81

Query: 79  DETDEQGQFYMTVDRIINGKELKAKLCSVRLVSSTHADCSIATNFAGGKTGVKLMRSPTS 138
           D+TD++G F + V   +    L    C VRL SS    C++ TNF GGKTG +  R P+ 
Sbjct: 82  DKTDDKGMFNIEVPYTVGSAHLHPSACLVRLASSGDHGCAVFTNFNGGKTGERPCR-PSH 140

Query: 139 MFRDIIKYRVGPFYYTTPMCEKPD 162
           ++   + Y  GPFY+T   C+  D
Sbjct: 141 VYPGRVTYSAGPFYFTLSQCDVKD 164

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740015|emb|CBI30197.3| unnamed protein product [Vitis vinifera]

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 53/71 (74%), Gaps = 2/71 (2%)

Query: 19  LAVANYGDA--SAGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCY 76
           +   N G+A   A VIHVGG+VLCQ+C K + EWVNGSNP+KG  VS+TCMDDR R M Y
Sbjct: 64  IGSVNVGEAWEEANVIHVGGKVLCQDCTKGWNEWVNGSNPIKGSRVSVTCMDDRRRVMYY 123

Query: 77  KSDETDEQGQF 87
            SDETDE G++
Sbjct: 124 GSDETDEAGKY 134

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
TAIR|locus:504955667	171	AT3G09925 "AT3G09925" [Arabido	0.875	0.900	0.524	3.2e-42
TAIR|locus:2169682	183	MOP10 "AT5G05500" [Arabidopsis	0.698	0.672	0.285	2.6e-08
TAIR|locus:2010990	335	PRP1 "AT1G54970" [Arabidopsis	0.630	0.331	0.318	5.9e-08
TAIR|locus:2081730	313	PRP3 "AT3G62680" [Arabidopsis	0.619	0.348	0.312	1.1e-06
TAIR|locus:2032180	359	AGP31 "arabinogalactan protein	0.704	0.345	0.262	3.5e-06
TAIR|locus:2062035	184	AT2G47530 "AT2G47530" [Arabido	0.676	0.646	0.294	3.8e-06
TAIR|locus:2143241	401	AT5G15780 "AT5G15780" [Arabido	0.494	0.216	0.311	6.1e-06
TAIR|locus:2061554	175	AT2G34700 "AT2G34700" [Arabido	0.727	0.731	0.266	1.1e-05
TAIR|locus:2057604	239	AGP30 "AT2G33790" [Arabidopsis	0.704	0.518	0.284	1.2e-05

TAIR|locus:504955667 AT3G09925 "AT3G09925" [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 86/164 (52%), Positives = 115/164 (70%)

Query:     3 SMALMLSAAFFMGC----TNLAVANYGDASAGVIHVGGQVLCQNCFKSYKEWVNGSNPLK 58
             ++ L++   F + C    T  A  N GD     IHV G+V+CQ+C  +Y EW+NGS P+K
Sbjct:     7 TLVLLIEILFLVSCVTHITTTAAYNNGDK----IHVAGKVMCQDCSLNYDEWINGSEPIK 62

Query:    59 GVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRIIN-GKELKAKLCSVRLVSSTHADC 117
             G  VS+TCMD+R R   Y SD TDE+GQF + V+++++ GK LK +LC+VRLVSS    C
Sbjct:    63 GAVVSITCMDERRRVSYYGSDLTDERGQFDLMVNKVLSHGKVLKPQLCNVRLVSSPDLSC 122

Query:   118 SIATNFAGGKTGVKLMRSPTSMFRDIIKYRVGPFYYTTPMCEKP 161
             +I TNF  G+TGVKL+R P ++FRD++KY VGPFYYTTPMCE P
Sbjct:   123 NIPTNFGNGQTGVKLVR-PFTVFRDLVKYVVGPFYYTTPMCETP 165

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2169682 MOP10 "AT5G05500" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 38/133 (28%), Positives = 57/133 (42%)

Query:    34 VGGQVLCQNCFKSYKEW-VNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVD 92
             V G V CQ+C K +  W + G+  + G  +S+ C + R +   YK   TD  G FY  + 
Sbjct:    45 VEGMVYCQSCDK-FGSWSLAGAEAIAGAKISIICKNHRQQVSFYKVFRTDSYGHFYGELK 103

Query:    93 RI-INGKELKAKL--CSVRLVSSTHADCSIATNFAGGKTGVKLM----RSPTSMFRDIIK 145
                +    L   L  C  +LVSS   DC++ +N      G  L     R   + +  +I 
Sbjct:   104 GFKMTPHFLDHPLHSCRAKLVSSPREDCNLFSNINNALDGAPLRYEEKRLKWTNYEAVI- 162

Query:   146 YRVGPFYYTTPMC 158
             Y  GP  +    C
Sbjct:   163 YAAGPLAFRPDHC 175

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0010054 "trichoblast differentiation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2010990 PRP1 "AT1G54970" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 5.9e-08, P = 5.9e-08
 Identities = 44/138 (31%), Positives = 66/138 (47%)

Query:    34 VGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMD------DRSRAMCYKSDETDEQGQF 87
             VGG +LC+N +++Y        P++G    + C +       ++  + Y SD TD +G F
Sbjct:   214 VGGIILCKNGYETY--------PIQGAKAKIVCSERGSYEKSKNEVVIY-SDPTDFKGYF 264

Query:    88 YMTVDRIINGKELKAKLCSVRLVSSTHADCSIATNFAGGKTGVKLMRSPTSMFRDI-IK- 145
             ++ +  I   K L    C V+L +S    C   TN   G TGV     P SM+ D  +K 
Sbjct:   265 HVVLTHI---KNLSN--CRVKLYTSPVETCKNPTNVNKGLTGV-----PFSMYSDKNLKL 314

Query:   146 YRVGPFYYTTPMCEKPDT 163
             + VGPFY+T      P T
Sbjct:   315 FNVGPFYFTAGSKAAPAT 332

GO:0005618 "cell wall" evidence=ISS

GO:0010054 "trichoblast differentiation" evidence=RCA

TAIR|locus:2081730 PRP3 "AT3G62680" [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 41/131 (31%), Positives = 61/131 (46%)

Query:    34 VGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRS------RAMCYKSDETDEQGQF 87
             V G +LC+N +++Y        P+ G  + + C D  S        + Y S+ TD +G F
Sbjct:   188 VDGIILCKNGYETY--------PILGAKIQIVCSDPASYGKSNTEVVIY-SNPTDSKGYF 238

Query:    88 YMTVDRIINGKELKAKLCSVRLVSSTHADCSIATNFAGGKTGVKLMRSPTSMFRD--IIK 145
             ++++  I   K+L    C V+L  S    C   TN   G TGV L       + D  +  
Sbjct:   239 HLSLTSI---KDLA--YCRVKLYLSPVETCKNPTNVNKGLTGVPLALYGYRFYPDKNLEL 293

Query:   146 YRVGPFYYTTP 156
             + VGPFYYT P
Sbjct:   294 FSVGPFYYTGP 304

GO:0005618 "cell wall" evidence=ISS

GO:0010054 "trichoblast differentiation" evidence=RCA;TAS

GO:0071365 "cellular response to auxin stimulus" evidence=IEP

GO:0071369 "cellular response to ethylene stimulus" evidence=IEP

GO:0072732 "cellular response to calcium ion starvation" evidence=IEP

GO:0009506 "plasmodesma" evidence=IDA

GO:0009653 "anatomical structure morphogenesis" evidence=RCA

GO:0048364 "root development" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0048869 "cellular developmental process" evidence=RCA

TAIR|locus:2032180 AGP31 "arabinogalactan protein 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 3.5e-06, P = 3.5e-06
 Identities = 36/137 (26%), Positives = 60/137 (43%)

Query:    31 VIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMT 90
             ++ V G V C++C  +    + G+ P++G TV L C   +S+        TD+ G F + 
Sbjct:   229 LVAVRGTVYCKSCKYAAFNTLLGAKPIEGATVKLVC---KSKKNITAETTTDKNGYFLLL 285

Query:    91 VDRIINGKELKAKLCSVRLVSSTHADCSIATNFAGGKTGVKL-----MRSPTSMFRDIIK 145
               + +     +   C V LV S    CS  +   GG  G +L     +   T +   ++ 
Sbjct:   286 APKTVTNFGFRG--CRVYLVKSKDYKCSKVSKLFGGDVGAELKPEKKLGKSTVVVNKLVY 343

Query:   146 --YRVGPFYYTTPMCEK 160
               + VGPF +  P C K
Sbjct:   344 GLFNVGPFAFN-PSCPK 359

GO:0005576 "extracellular region" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2062035 AT2G47530 "AT2G47530" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 3.8e-06, P = 3.8e-06
 Identities = 41/139 (29%), Positives = 65/139 (46%)

Query:    32 IHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTC--MDDRSRAMC---YKSDETDEQGQ 86
             I + G +LC++ +K+Y        P++G  V + C  +D   + +      S  TD +G 
Sbjct:    55 IAIEGFILCKSGYKTY--------PIQGGKVKVVCPVVDSYGKLVAKVTISSYPTDLKGY 106

Query:    87 FYMTVDRIINGKELKAKLCSVRLVSSTHADCSIATNFAGGKTGVKLMRSP-TSMFR---D 142
             FY  +   ++ K      C V+L SS    C   TN   G TG  L  SP  S F    +
Sbjct:   107 FYF-ITYGLSHKVNNISSCKVKLESSPVFTCKTPTNVNKGVTGAPL--SPDNSKFLSHDN 163

Query:   143 IIKYRVGPFYYTTPMCEKP 161
             +  Y + PFY+++P+  KP
Sbjct:   164 LTLYTLEPFYFSSPVAPKP 182

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2143241 AT5G15780 "AT5G15780" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 6.1e-06, P = 6.1e-06
 Identities = 28/90 (31%), Positives = 52/90 (57%)

Query:    34 VGGQVLCQNCFK-SYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVD 92
             V G V C  CF  ++ +  N  + + G  V++ C+D+ S+    +  +TD++G+F + + 
Sbjct:    42 VVGTVYCDTCFNGAFSKSPN--HLISGALVAVECIDENSKPSFRQEVKTDKRGEFKVKLP 99

Query:    93 RIINGKELKAKLCSVRLVSSTHADCSIATN 122
               ++    K K CSV+L+SS+   CSIA++
Sbjct:   100 FSVSKHVKKIKRCSVKLLSSSQPYCSIASS 129

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2061554 AT2G34700 "AT2G34700" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 36/135 (26%), Positives = 61/135 (45%)

Query:    28 SAGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQF 87
             S  ++ V G V C++C  S  + +  ++PL+G TV L C ++  R +  ++ +TD+ G F
Sbjct:    42 SRRLVAVEGMVYCKSCKYSGVDTLLEASPLQGATVKLAC-NNTKRGVTMET-KTDKNGYF 99

Query:    88 YMTVDRIINGKELKAKLCSVRLVSSTHAD--CSIATNFAGGKTGVKLMRSPTSMF--RDI 143
             +M   + +                 T A   C++ +    G TG  L  S T      D 
Sbjct:   100 FMLAPKKLTTYAFHTCRAWPTNPGPTTATMTCTVPSKLNNGITGAMLKPSKTINIGEHDY 159

Query:   144 IKYRVGPFYYTTPMC 158
             + + VGPF +  P C
Sbjct:   160 VLFSVGPFAFE-PAC 173

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2057604 AGP30 "AT2G33790" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 39/137 (28%), Positives = 61/137 (44%)

Query:    31 VIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMT 90
             ++ V G V C+ C  +    V G+ P+K   V L C + ++        +TD+ G F + 
Sbjct:   109 LVAVRGVVYCKACKYAGVNNVQGAKPVKDAVVRLVCKNKKNSI---SETKTDKNGYFMLL 165

Query:    91 VDRIINGKELKAKLCSVRLVSSTHADCS-IATNFAGGKTGV-KLMRSP--TSMFRDIIKY 146
               + +   ++K   C   LV S    CS +++   GGK  V K +  P  +S      KY
Sbjct:   166 APKTVTNYDIKG--CRAFLVKSPDTKCSKVSSLHDGGKGSVLKPVLKPGFSSTIMRWFKY 223

Query:   147 ---RVGPFYYTTPMCEK 160
                 VGPF +  P C K
Sbjct:   224 SVYNVGPFAFE-PTCPK 239


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.132   0.401    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      176       176   0.00081  109 3  11 22  0.40    32
                                                     31  0.49    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  168 KB (2098 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.61u 0.12s 15.73t   Elapsed:  00:00:02
  Total cpu time:  15.61u 0.12s 15.73t   Elapsed:  00:00:02
  Start:  Sat May 11 09:28:44 2013   End:  Sat May 11 09:28:46 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00280266 hypothetical protein (173 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	176
pfam01190	95	pfam01190, Pollen_Ole_e_I, Pollen proteins Ole e I	3e-17

>gnl|CDD|216353 pfam01190, Pollen_Ole_e_I, Pollen proteins Ole e I like

 Score = 72.5 bits (178), Expect = 3e-17
 Identities = 29/99 (29%), Positives = 39/99 (39%), Gaps = 4/99 (4%)

Query: 34  VGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDR 93
           V G V C  C      +   + PL G  V + C D   R +      TDE+G F + +  
Sbjct: 1   VEGSVYCDTC--RASGFELSAYPLPGAKVKIECKDGDGRVVTSAEAVTDEKGYFKVELPG 58

Query: 94  IINGKELKAKLCSVRLVSSTHADCSIATNFAGGKTGVKL 132
             +        C  +LVSS  + CS  TN     TG  L
Sbjct: 59  DPSSLTHLESACRAKLVSSPDSACSAPTNG--NGTGAPL 95

Length = 95

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	176
PF01190	97	Pollen_Ole_e_I: Pollen proteins Ole e I like; Inte	99.95
PF13620	82	CarboxypepD_reg: Carboxypeptidase regulatory-like	96.33
PF11974	97	MG1: Alpha-2-macroglobulin MG1 domain; InterPro: I	96.17
PF13715	88	DUF4480: Domain of unknown function (DUF4480)	95.75
PF01060	80	DUF290: Transthyretin-like family; InterPro: IPR00	95.48
PF10670	215	DUF4198: Domain of unknown function (DUF4198)	92.14
PRK15036	137	hydroxyisourate hydrolase; Provisional	91.26
PF07210	85	DUF1416: Protein of unknown function (DUF1416); In	91.16
PF05738	70	Cna_B: Cna protein B-type domain; InterPro: IPR008	89.01
PF08400	134	phage_tail_N: Prophage tail fibre N-terminal; Inte	88.5
cd03858	374	M14_CP_N-E_like Carboxypeptidase (CP) N/E-like sub	88.01
cd03866	376	M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM	85.2
COG5266	264	CbiK ABC-type Co2+ transport system, periplasmic c	84.54
TIGR02438	281	catachol_actin catechol 1,2-dioxygenase, Actinobac	84.09
PF15240	179	Pro-rich: Proline-rich	83.7
PF00775	183	Dioxygenase_C: Dioxygenase; InterPro: IPR000627 Th	83.53
cd03464	220	3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-	83.2
cd03463	185	3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4	83.06
cd03459	158	3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD)	82.75
cd00421	146	intradiol_dioxygenase Intradiol dioxygenases catal	82.43
TIGR02422	220	protocat_beta protocatechuate 3,4-dioxygenase, bet	81.65
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	80.2

>PF01190 Pollen_Ole_e_I: Pollen proteins Ole e I like; InterPro: IPR006041 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms

Probab=99.95  E-value=3.7e-28  Score=176.62  Aligned_cols=96  Identities=33%  Similarity=0.589  Sum_probs=86.3

Q ss_pred             EEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEEccccccC-CCcccceEEEEccC
Q 048602           34 VGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRIINGK-ELKAKLCSVRLVSS  112 (176)
Q Consensus        34 V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~~~~~~~-~~~~~~C~v~L~sS  112 (176)
                      |+|+||||+|+++ ..  ..++||+||+|+|+|+++++.+.+.++++||++|+|+|+||....+. .+..+.|+|+|++|
T Consensus         1 V~G~V~C~~C~~~-~~--~~~~~l~GA~V~v~C~~~~~~~~~~~~~~Td~~G~F~i~l~~~~~~~~~~~~~~C~v~l~~s   77 (97)
T PF01190_consen    1 VEGVVYCDDCSSG-FS--RAAKPLPGAKVSVECKDGNGGVVFSAEAKTDENGYFSIELPSDPGSSSPHLSSSCRVKLVSS   77 (97)
T ss_pred             CEEEEEeCCCCCC-cc--ccCccCCCCEEEEECCCCCCCcEEEEEEEeCCCCEEEEEecCccccccCCCCCCcEEEEeCC
Confidence            7999999999994 33  78899999999999999887777789999999999999999875432 46799999999999


Q ss_pred             CCcCCcccccCCCCccccee
Q 048602          113 THADCSIATNFAGGKTGVKL  132 (176)
Q Consensus       113 p~~~C~~~t~~n~g~sg~~L  132 (176)
                      |++.|+++++.|+|++|++|
T Consensus        78 p~~~C~~~~~~~~G~~ga~l   97 (97)
T PF01190_consen   78 PDPSCNVPTNSNGGRTGAKL   97 (97)
T ss_pred             CcCcCCCCcCCCCCccCCcC
Confidence            99999999999999999986

A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ole e 1. A number of plant pollen proteins, whose biological function is not yet known, are structurally related []. These proteins are most probably secreted and consist of about 145 residues. There are six cysteines which are conserved in the sequence of these proteins. They seem to be involved in disulphide bonds.

>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A

Probab=96.33  E-value=0.0061  Score=41.56  Aligned_cols=46  Identities=28%  Similarity=0.408  Sum_probs=30.5

Q ss_pred             EEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEE-Eccc
Q 048602           34 VGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMT-VDRI   94 (176)
Q Consensus        34 V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~-l~~~   94 (176)
                      |.|+|.=.           ...||+||.|.|.-.+...    .....||++|.|.++ +|..
T Consensus         2 I~G~V~d~-----------~g~pv~~a~V~l~~~~~~~----~~~~~Td~~G~f~~~~l~~g   48 (82)
T PF13620_consen    2 ISGTVTDA-----------TGQPVPGATVTLTDQDGGT----VYTTTTDSDGRFSFEGLPPG   48 (82)
T ss_dssp             EEEEEEET-----------TSCBHTT-EEEET--TTTE----CCEEE--TTSEEEEEEE-SE
T ss_pred             EEEEEEcC-----------CCCCcCCEEEEEEEeeCCC----EEEEEECCCceEEEEccCCE
Confidence            67888753           2389999999998765432    267899999999998 7764

>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin []

Probab=96.17  E-value=0.0077  Score=43.74  Aligned_cols=40  Identities=23%  Similarity=0.350  Sum_probs=31.6

Q ss_pred             cccCCCccCCCCEEEEEecC-CCCceEEEEEeEcCCCceEEEEEc
Q 048602           49 EWVNGSNPLKGVTVSLTCMD-DRSRAMCYKSDETDEQGQFYMTVD   92 (176)
Q Consensus        49 ~~~~~s~pi~GA~V~v~C~~-~~~~~~~~~~~~TD~~G~F~i~l~   92 (176)
                      +.+....|++||+|+|-  + .++++.  .+++||++|...++..
T Consensus        20 ~~L~tg~Pv~ga~V~l~--~~~~~~~l--~~g~TD~~G~a~~~~~   60 (97)
T PF11974_consen   20 TSLSTGKPVAGAEVELY--DSRNGQVL--ASGKTDADGFASFDST   60 (97)
T ss_pred             eeCCCCCccCCCEEEEE--ECCCCcEe--eeeeeCCCceEEecCC
Confidence            45677899999999994  3 344444  7999999999998765

>PF13715 DUF4480: Domain of unknown function (DUF4480)

Probab=95.75  E-value=0.033  Score=38.56  Aligned_cols=33  Identities=36%  Similarity=0.518  Sum_probs=26.7

Q ss_pred             CccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEEccc
Q 048602           54 SNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRI   94 (176)
Q Consensus        54 s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~~~   94 (176)
                      ..||+||.|.+.=.+        ....||++|.|.|.++..
T Consensus        12 ~~pl~~a~V~~~~~~--------~~~~Td~~G~F~i~~~~g   44 (88)
T PF13715_consen   12 GEPLPGATVYLKNTK--------KGTVTDENGRFSIKLPEG   44 (88)
T ss_pred             CCCccCeEEEEeCCc--------ceEEECCCeEEEEEEcCC
Confidence            489999999987222        467899999999998754

>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []

Probab=95.48  E-value=0.048  Score=38.02  Aligned_cols=48  Identities=27%  Similarity=0.347  Sum_probs=35.9

Q ss_pred             EEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEEccc
Q 048602           35 GGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRI   94 (176)
Q Consensus        35 ~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~~~   94 (176)
                      .|+..|..            .|++|++|+|-=++....-....+..||++|+|.|.=...
T Consensus         1 ~G~L~C~~------------~P~~~~~V~L~e~d~~~~Ddll~~~~Td~~G~F~l~G~~~   48 (80)
T PF01060_consen    1 KGQLMCGG------------KPAKNVKVKLWEDDYFDPDDLLDETKTDSDGNFELSGSTN   48 (80)
T ss_pred             CeEEEeCC------------ccCCCCEEEEEECCCCCCCceeEEEEECCCceEEEEEEcc
Confidence            37888854            8999999999988863211123789999999999975443

The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space

>PF10670 DUF4198: Domain of unknown function (DUF4198)

Probab=92.14  E-value=0.23  Score=39.58  Aligned_cols=41  Identities=24%  Similarity=0.229  Sum_probs=32.7

Q ss_pred             CccCCCCEEEEEecCCCCce-EEEEEeEcCCCceEEEEEccc
Q 048602           54 SNPLKGVTVSLTCMDDRSRA-MCYKSDETDEQGQFYMTVDRI   94 (176)
Q Consensus        54 s~pi~GA~V~v~C~~~~~~~-~~~~~~~TD~~G~F~i~l~~~   94 (176)
                      .+|++||+|.+.-.+..... ....+.+||++|.+.|.++..
T Consensus       161 GkPl~~a~V~~~~~~~~~~~~~~~~~~~TD~~G~~~~~~~~~  202 (215)
T PF10670_consen  161 GKPLAGAEVEAFSPGGWYDVEHEAKTLKTDANGRATFTLPRP  202 (215)
T ss_pred             CeEcccEEEEEEECCCccccccceEEEEECCCCEEEEecCCC
Confidence            38999999999999865321 114689999999999998764

>PRK15036 hydroxyisourate hydrolase; Provisional

Probab=91.26  E-value=1.2  Score=34.39  Aligned_cols=49  Identities=22%  Similarity=0.266  Sum_probs=34.7

Q ss_pred             EEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEEc
Q 048602           33 HVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVD   92 (176)
Q Consensus        33 ~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~   92 (176)
                      .|.|.|.=-          ....|.+|++|+|+=.+.++... ..++.||++|.|...++
T Consensus        28 ~Is~HVLDt----------~~G~PA~gV~V~L~~~~~~~w~~-l~~~~Td~dGR~~~l~~   76 (137)
T PRK15036         28 ILSVHILNQ----------QTGKPAADVTVTLEKKADNGWLQ-LNTAKTDKDGRIKALWP   76 (137)
T ss_pred             CeEEEEEeC----------CCCcCCCCCEEEEEEccCCceEE-EEEEEECCCCCCccccC
Confidence            377777632          34589999999997554433333 37999999999976444

>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length

Probab=91.16  E-value=1.4  Score=31.44  Aligned_cols=60  Identities=20%  Similarity=0.219  Sum_probs=43.7

Q ss_pred             CCCceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEEccccccCCCcccceEE
Q 048602           28 SAGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRIINGKELKAKLCSV  107 (176)
Q Consensus        28 ~~~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~~~~~~~~~~~~~C~v  107 (176)
                      .....+|+|+|. .+           ..|++||-|+|-=..  ++.  .+|-.|++.|.|+.-...         ....+
T Consensus         4 ~~ke~VItG~V~-~~-----------G~Pv~gAyVRLLD~s--gEF--taEvvts~~G~FRFfaap---------G~Wtv   58 (85)
T PF07210_consen    4 VEKETVITGRVT-RD-----------GEPVGGAYVRLLDSS--GEF--TAEVVTSATGDFRFFAAP---------GSWTV   58 (85)
T ss_pred             ccceEEEEEEEe-cC-----------CcCCCCeEEEEEcCC--CCe--EEEEEecCCccEEEEeCC---------CceEE
Confidence            345689999998 22           289999999997443  443  589999999999975433         44677


Q ss_pred             EEccC
Q 048602          108 RLVSS  112 (176)
Q Consensus       108 ~L~sS  112 (176)
                      +.++.
T Consensus        59 Ral~~   63 (85)
T PF07210_consen   59 RALSR   63 (85)
T ss_pred             EEEcc
Confidence            76654

Members of this family appear to be Actinomycete specific. The function of this family is unknown.

>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains

Probab=89.01  E-value=0.69  Score=30.50  Aligned_cols=32  Identities=28%  Similarity=0.333  Sum_probs=24.2

Q ss_pred             CCCCEEEEEecCCCCceEEEEEeEcCCCceEEEE
Q 048602           57 LKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMT   90 (176)
Q Consensus        57 i~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~   90 (176)
                      |+||++.|.-.+......  .+..||++|.|.+.
T Consensus         1 L~Ga~f~L~~~~~~~~~~--~~~~Td~~G~~~f~   32 (70)
T PF05738_consen    1 LAGATFELYDEDGNEVIE--VTVTTDENGKYTFK   32 (70)
T ss_dssp             -STEEEEEEETTSEEEEE--EEEEGGTTSEEEEE
T ss_pred             CCCeEEEEEECCCCEEEE--EEEEECCCCEEEEe
Confidence            689999999887653221  26899999999986

The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....

>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein

Probab=88.50  E-value=1.3  Score=34.23  Aligned_cols=43  Identities=23%  Similarity=0.378  Sum_probs=34.7

Q ss_pred             CCccCCCCEEEEEecCCCCceE--EEEEeEcCCCceEEEEEcccc
Q 048602           53 GSNPLKGVTVSLTCMDDRSRAM--CYKSDETDEQGQFYMTVDRII   95 (176)
Q Consensus        53 ~s~pi~GA~V~v~C~~~~~~~~--~~~~~~TD~~G~F~i~l~~~~   95 (176)
                      ..+|++|+...|.=+.....++  +.+...||+.|+|.+++..-.
T Consensus        13 ~G~pv~g~~I~L~A~~tS~~Vv~~t~as~~t~~~G~Ys~~~epG~   57 (134)
T PF08400_consen   13 AGKPVPGCTITLKARRTSSTVVVGTVASVVTGEAGEYSFDVEPGV   57 (134)
T ss_pred             CCCcCCCCEEEEEEccCchheEEEEEEEEEcCCCceEEEEecCCe
Confidence            3489999999999998775433  457889999999999986653

The characteristics of the protein distribution suggest prophage matches.

>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs)

Probab=88.01  E-value=1.1  Score=39.63  Aligned_cols=43  Identities=23%  Similarity=0.282  Sum_probs=33.0

Q ss_pred             EEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEEccc
Q 048602           33 HVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRI   94 (176)
Q Consensus        33 ~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~~~   94 (176)
                      .|.|+|.-.+           ..||+||+|.|+  +.      .....||.+|.|.+.+|..
T Consensus       299 ~i~G~V~d~~-----------g~pl~~A~V~i~--~~------~~~~~Td~~G~f~~~l~~G  341 (374)
T cd03858         299 GIKGFVRDAN-----------GNPIANATISVE--GI------NHDVTTAEDGDYWRLLLPG  341 (374)
T ss_pred             ceEEEEECCC-----------CCccCCeEEEEe--cc------eeeeEECCCceEEEecCCE
Confidence            7899998742           279999999993  11      2467899999999987643

The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr

>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs)

Probab=85.20  E-value=2.2  Score=38.08  Aligned_cols=46  Identities=22%  Similarity=0.413  Sum_probs=32.4

Q ss_pred             eEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEEccc
Q 048602           32 IHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRI   94 (176)
Q Consensus        32 v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~~~   94 (176)
                      ..|.|.|. |.         . ..||+||+|.|+  +.+ .   .....||++|.|.+.++..
T Consensus       295 ~gI~G~V~-D~---------~-g~pi~~A~V~v~--g~~-~---~~~~~T~~~G~y~~~l~pG  340 (376)
T cd03866         295 LGVKGQVF-DS---------N-GNPIPNAIVEVK--GRK-H---ICPYRTNVNGEYFLLLLPG  340 (376)
T ss_pred             CceEEEEE-CC---------C-CCccCCeEEEEE--cCC-c---eeEEEECCCceEEEecCCe
Confidence            36899998 43         1 279999999997  221 1   1345799999997766543

The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont

>COG5266 CbiK ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]

Probab=84.54  E-value=1.9  Score=36.85  Aligned_cols=41  Identities=17%  Similarity=0.166  Sum_probs=29.3

Q ss_pred             CccCCCCEEEEEecCC--------C-CceEEEEEeEcCCCceEEEEEccc
Q 048602           54 SNPLKGVTVSLTCMDD--------R-SRAMCYKSDETDEQGQFYMTVDRI   94 (176)
Q Consensus        54 s~pi~GA~V~v~C~~~--------~-~~~~~~~~~~TD~~G~F~i~l~~~   94 (176)
                      .+||+||+|.++-.+.        . .+..-..+..||.+|+|.+..+..
T Consensus       182 GkPv~nA~V~v~~~n~~~~d~~a~~~~~ek~~~~~~TD~kG~~~fip~r~  231 (264)
T COG5266         182 GKPVPNATVEVEFDNIDTKDNRAKTGNTEKTALVQFTDDKGEVSFIPLRA  231 (264)
T ss_pred             CccCCCcEEEEEEecccccccccccCCCCCcceEEEcCCCceEEEEEccC
Confidence            4899999999995441        1 122224688999999999875543

>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial

Probab=84.09  E-value=4.9  Score=34.76  Aligned_cols=51  Identities=27%  Similarity=0.283  Sum_probs=36.3

Q ss_pred             CCceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCce----------EEEEEeEcCCCceEEEE
Q 048602           29 AGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRA----------MCYKSDETDEQGQFYMT   90 (176)
Q Consensus        29 ~~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~----------~~~~~~~TD~~G~F~i~   90 (176)
                      ...+.|+|.|. |.          .-.||+||.|.|=.-+.+|.-          -+.....||++|.|.+.
T Consensus       130 G~pl~v~G~V~-D~----------~G~Pv~gA~VdiWqada~G~Ys~~~~~~~~~~lRGr~~TDadG~y~F~  190 (281)
T TIGR02438       130 GTPLVFSGQVT-DL----------DGNGLAGAKVELWHADDDGFYSQFAPGIPEWNLRGTIIADDEGRFEIT  190 (281)
T ss_pred             CCEEEEEEEEE-cC----------CCCCcCCCEEEEEecCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEE
Confidence            34588999998 32          127999999999555544321          13577889999998875

Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.

>PF15240 Pro-rich: Proline-rich

Probab=83.70  E-value=0.59  Score=37.81  Aligned_cols=14  Identities=29%  Similarity=0.325  Sum_probs=9.3

Q ss_pred             HHHHHH-HHHHHHHh
Q 048602            4 MALMLS-AAFFMGCT   17 (176)
Q Consensus         4 ~~~~l~-~s~~~~~~   17 (176)
                      |||||| |+||+|||
T Consensus         1 MLlVLLSvALLALSS   15 (179)
T PF15240_consen    1 MLLVLLSVALLALSS   15 (179)
T ss_pred             ChhHHHHHHHHHhhh
Confidence            444555 88888875

>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases

Probab=83.53  E-value=2.8  Score=33.79  Aligned_cols=53  Identities=19%  Similarity=0.273  Sum_probs=36.4

Q ss_pred             CCCCceEEEEEEEcccCCCCCccccCCCccCCCCEEEE-EecCCC-------C----ceEEEEEeEcCCCceEEEE
Q 048602           27 ASAGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSL-TCMDDR-------S----RAMCYKSDETDEQGQFYMT   90 (176)
Q Consensus        27 ~~~~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v-~C~~~~-------~----~~~~~~~~~TD~~G~F~i~   90 (176)
                      ++...+.|.|.|.=.+|           .||+||.|.| +|....       +    ...+.....||++|.|.+.
T Consensus        25 ~~G~~l~l~G~V~D~~g-----------~Pv~~A~veiWqada~G~Ys~~~~~~~~~~~~~rG~~~Td~~G~y~f~   89 (183)
T PF00775_consen   25 APGEPLVLHGRVIDTDG-----------KPVPGALVEIWQADADGRYSGQDPGSDQPDFNLRGRFRTDADGRYSFR   89 (183)
T ss_dssp             SSS-EEEEEEEEEETTS-----------SB-TTEEEEEEE--TTS--TTTBTTSSSSTTTTEEEEEECTTSEEEEE
T ss_pred             CCCCEEEEEEEEECCCC-----------CCCCCcEEEEEecCCCCccccccccccccCCCcceEEecCCCCEEEEE
Confidence            45568999999995444           7999999999 887542       1    1124578889999999764

Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....

>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit

Probab=83.20  E-value=6.5  Score=32.76  Aligned_cols=51  Identities=22%  Similarity=0.240  Sum_probs=37.1

Q ss_pred             CCceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCce---------------EEEEEeEcCCCceEEEE
Q 048602           29 AGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRA---------------MCYKSDETDEQGQFYMT   90 (176)
Q Consensus        29 ~~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~---------------~~~~~~~TD~~G~F~i~   90 (176)
                      ...+.|+|.|.=.+|           .||+||.|.|=--+..|.-               ..+....||++|.|.+.
T Consensus        63 G~~i~l~G~V~D~~G-----------~PV~~A~VEIWQad~~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~  128 (220)
T cd03464          63 GERIIVHGRVLDEDG-----------RPVPNTLVEIWQANAAGRYRHKRDQHDAPLDPNFGGAGRTLTDDDGYYRFR  128 (220)
T ss_pred             CCEEEEEEEEECCCC-----------CCCCCCEEEEEecCCCCcccCccCCcccccCCCCCCEEEEEECCCccEEEE
Confidence            345999999994333           7999999999776654311               12456689999998885

3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.

>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit

Probab=83.06  E-value=6.6  Score=31.79  Aligned_cols=51  Identities=22%  Similarity=0.327  Sum_probs=37.2

Q ss_pred             CCceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCc------------eEE--EEEeEcCCCceEEEE
Q 048602           29 AGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSR------------AMC--YKSDETDEQGQFYMT   90 (176)
Q Consensus        29 ~~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~------------~~~--~~~~~TD~~G~F~i~   90 (176)
                      ...+.|+|.|.=.+           -.||+||.|.|=.-+.+|.            ..+  +....||++|.|.+.
T Consensus        34 G~~l~l~G~V~D~~-----------g~Pi~gA~VeiWqad~~G~Y~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F~   98 (185)
T cd03463          34 GERITLEGRVYDGD-----------GAPVPDAMLEIWQADAAGRYAHPADSRRRLDPGFRGFGRVATDADGRFSFT   98 (185)
T ss_pred             CCEEEEEEEEECCC-----------CCCCCCCEEEEEcCCCCCccCCcCCcccccCCCCCcEEEEEECCCCCEEEE
Confidence            46799999999322           2799999999977766531            112  345679999999885

3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.

>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate

Probab=82.75  E-value=7.4  Score=30.66  Aligned_cols=52  Identities=21%  Similarity=0.255  Sum_probs=38.1

Q ss_pred             CCCceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCce-------------E--EEEEeEcCCCceEEEE
Q 048602           28 SAGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRA-------------M--CYKSDETDEQGQFYMT   90 (176)
Q Consensus        28 ~~~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~-------------~--~~~~~~TD~~G~F~i~   90 (176)
                      +...+.|+|.|.=.+|           .||+||.|.|=--+..|.-             .  .+....||++|.|.+.
T Consensus        12 ~G~~l~l~g~V~D~~g-----------~Pv~~A~veiWqad~~G~Y~~~~~~~~~~~~~~f~~rG~~~Td~~G~~~f~   78 (158)
T cd03459          12 IGERIILEGRVLDGDG-----------RPVPDALVEIWQADAAGRYRHPRDSHRAPLDPNFTGFGRVLTDADGRYRFR   78 (158)
T ss_pred             CCcEEEEEEEEECCCC-----------CCCCCCEEEEEccCCCCccCCccCCcccccCCCCCceeEEEECCCCcEEEE
Confidence            3467999999994333           7999999999776654311             1  1356789999999985

3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.

>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates

Probab=82.43  E-value=7.1  Score=30.05  Aligned_cols=52  Identities=19%  Similarity=0.275  Sum_probs=38.8

Q ss_pred             CCCceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCc------------eEEEEEeEcCCCceEEEE
Q 048602           28 SAGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSR------------AMCYKSDETDEQGQFYMT   90 (176)
Q Consensus        28 ~~~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~------------~~~~~~~~TD~~G~F~i~   90 (176)
                      +...+.|.|.|.=.+           ..|++||.|.|---+..|.            ........||++|.|.+.
T Consensus         8 ~G~~l~l~G~V~D~~-----------g~pv~~A~VeiW~~d~~G~Y~~~~~~~~~~~~~~rg~~~Td~~G~y~f~   71 (146)
T cd00421           8 PGEPLTLTGTVLDGD-----------GCPVPDALVEIWQADADGRYSGQDDSGLDPEFFLRGRQITDADGRYRFR   71 (146)
T ss_pred             CCCEEEEEEEEECCC-----------CCCCCCcEEEEEecCCCCccCCcCccccCCCCCCEEEEEECCCcCEEEE
Confidence            345789999999433           2789999999987776431            123567899999999985

This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.

>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit

Probab=81.65  E-value=8.1  Score=32.20  Aligned_cols=51  Identities=22%  Similarity=0.225  Sum_probs=36.9

Q ss_pred             CCceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCce---------------EEEEEeEcCCCceEEEE
Q 048602           29 AGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRA---------------MCYKSDETDEQGQFYMT   90 (176)
Q Consensus        29 ~~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~---------------~~~~~~~TD~~G~F~i~   90 (176)
                      ...+.|+|.|.=.+|           .||+||.|.|=--+..|.-               .......||++|.|.+.
T Consensus        58 G~~i~l~G~V~D~~g-----------~PV~~A~VEIWQada~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~  123 (220)
T TIGR02422        58 GERIIVHGRVLDEDG-----------RPVPNTLVEVWQANAAGRYRHKNDQYLAPLDPNFGGVGRTLTDSDGYYRFR  123 (220)
T ss_pred             CCEEEEEEEEECCCC-----------CCCCCCEEEEEecCCCCcccCccCccccccCCCCCCEEEEEECCCccEEEE
Confidence            356999999994333           7999999999666554311               12456779999999885

This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=80.20  E-value=1.8  Score=31.46  Aligned_cols=21  Identities=19%  Similarity=0.241  Sum_probs=12.7

Q ss_pred             hHHHHHHHHHHHHHHhhhhhh
Q 048602            2 LSMALMLSAAFFMGCTNLAVA   22 (176)
Q Consensus         2 ~~~~~~l~~s~~~~~~~~~~a   22 (176)
                      ++||.+||+++|+++|-.+++
T Consensus         6 ~llL~l~LA~lLlisSevaa~   26 (95)
T PF07172_consen    6 FLLLGLLLAALLLISSEVAAR   26 (95)
T ss_pred             HHHHHHHHHHHHHHHhhhhhH
Confidence            456666667777776654443

Some of them may be involved in resistance to environmental stress [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	176
3irp_X	429	URO-adherence factor A; DEV-IGG fold, cell WALL, h	93.73
3uaf_A	117	TTR-52; beta barrel/sandwich, cell engulfment, sec	92.94
3e8v_A	82	Possible transglutaminase-family protein; structur	92.44
3kcp_A	321	Cellulosomal-scaffolding protein A; dockerin, X-mo	87.64
4ank_A	147	Transthyretin; hormone binding protein, thyroxine	86.8
2bum_B	241	Protocatechuate 3,4-dioxygenase beta chain; oxidor	80.83
3mn8_A	435	LP15968P; catalytic domain of alpha/beta-hydrolase	80.78
2boy_A	254	3-chlorocatechol 1,2-dioxygenase; beta barrel, oxi	80.31

>3irp_X URO-adherence factor A; DEV-IGG fold, cell WALL, hemagglutinin, peptidoglycan-anchor secreted, virulence, cell adhesion; 1.50A {Staphylococcus saprophyticus subsp} PDB: 3irz_A 3is0_X 3is1_X

Probab=93.73  E-value=0.23  Score=43.81  Aligned_cols=58  Identities=21%  Similarity=0.341  Sum_probs=44.4

Q ss_pred             CceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEE-Ecc
Q 048602           30 GVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMT-VDR   93 (176)
Q Consensus        30 ~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~-l~~   93 (176)
                      ....|.|.||-|.=+.+-..  .+..+|+|++|.|.  +..|.++  ...+||++|.|.+. |+.
T Consensus       304 G~~~igg~Vw~D~n~nG~~D--~~e~gl~gv~v~L~--d~~G~~v--~tttTd~~G~Y~F~~L~~  362 (429)
T 3irp_X          304 GFGGFGGYVWFDKNNDGVQN--DSNAAAAGITVNLL--DPTGIRL--ATTTTDITGHYNFDNLTN  362 (429)
T ss_dssp             CEEEEEEEEEECTTSSSSSC--CSSCBCTTCEEEEE--CTTSCEE--EEEECCTTSEEEEEEEES
T ss_pred             ceEEEccEEEEeCCCCCCcC--cCCCCcCCeEEEEE--cCCCCEE--EEEEeCCCCeEEeCCCCC
Confidence            34788999999985555444  45579999999997  5556654  68899999999986 444

>3uaf_A TTR-52; beta barrel/sandwich, cell engulfment, secreted, protein BIN; 2.01A {Caenorhabditis elegans}

Probab=92.94  E-value=0.081  Score=38.81  Aligned_cols=53  Identities=19%  Similarity=0.245  Sum_probs=34.7

Q ss_pred             CceEEEEEEEcccCCCCCccccCCCcc--CCCCEEEEEecCCCC--ceEEEEEeEcCCCceEEEEEccc
Q 048602           30 GVIHVGGQVLCQNCFKSYKEWVNGSNP--LKGVTVSLTCMDDRS--RAMCYKSDETDEQGQFYMTVDRI   94 (176)
Q Consensus        30 ~~v~V~G~VyCd~C~~~~~~~~~~s~p--i~GA~V~v~C~~~~~--~~~~~~~~~TD~~G~F~i~l~~~   94 (176)
                      ..|.|.|+..|..            .|  ..+++|+|-=.+..+  .-....+..||++|+|.|.=...
T Consensus         3 qsV~V~G~L~C~~------------~Pa~~~~V~V~L~d~~~~~~d~Ddll~~~~Td~~G~F~l~G~~~   59 (117)
T 3uaf_A            3 SCLMATGVLKCPT------------DPEAVKKVHIDLWDAAAAAAESDDLMGRTWSDRNGNFQVTGCAS   59 (117)
T ss_dssp             EEEEEEEEEECTT------------CGGGGSSCEEEEEEHHHHHTTSCCEEEEEECCTTSEEEEEEEEC
T ss_pred             EEEEEEEEEEeCC------------ccCCCCCEEEEEEecccccCCchHhheeeEECCCCEEEEEEEee
Confidence            4689999999954            45  456777664211111  11123688999999999975443

>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}

Probab=92.44  E-value=0.23  Score=34.33  Aligned_cols=39  Identities=18%  Similarity=0.258  Sum_probs=31.4

Q ss_pred             CCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEE
Q 048602           52 NGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTV   91 (176)
Q Consensus        52 ~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l   91 (176)
                      ..-+|.+||+|.++=-+...- ...+.-.||++|.|.+..
T Consensus        10 ~~GkPV~gA~Vefe~yNyae~-~~~~~~~TD~~G~~s~~~   48 (82)
T 3e8v_A           10 AEGQPVADATVEFKVYNYAEF-YTVATKHTDRSGHASLTA   48 (82)
T ss_dssp             TTSCBCTTCEEEEEEEETTEE-EEEEEEECCTTSEEEEEC
T ss_pred             CCCCCCCCCEEEEEEEEchhe-eEEEEEEECCCceEEEEE
Confidence            445899999999998887432 224778999999999987

>3kcp_A Cellulosomal-scaffolding protein A; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} PDB: 3p0d_C 4fl4_C 2b59_B

Probab=87.64  E-value=0.75  Score=39.19  Aligned_cols=57  Identities=19%  Similarity=0.171  Sum_probs=41.5

Q ss_pred             CCCCceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEE-EEcccc
Q 048602           27 ASAGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYM-TVDRII   95 (176)
Q Consensus        27 ~~~~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i-~l~~~~   95 (176)
                      .....-.|.|+|.++-=...  +  ...+.=.|++|+|.=.+        ..++||++|||+| .+|...
T Consensus       153 ~~~~~~~vsGYi~~~~~~~~--~--~~~~~~~G~~V~i~gt~--------~sa~tD~~G~f~I~~vp~~~  210 (321)
T 3kcp_A          153 PVIEGYKVSGYILPDFSFDA--T--VAPLVKAGFKVEIVGTE--------LYAVTDANGYFEITGVPANA  210 (321)
T ss_dssp             CCCSSEEEEEEEEESSCCCT--T--THHHHHSCCEEEETTSS--------CEEECCTTSEEEEEEECCEE
T ss_pred             CCCCCceEEEEEcccccccc--c--cchhccCCcEEEEEecc--------ceeEECCCceEEEeccCCCC
Confidence            34556899999999742221  1  34456789999997665        3889999999999 577753

>4ank_A Transthyretin; hormone binding protein, thyroxine transport protein, hormon amyloidosis inhibition; 1.70A {Homo sapiens}

Probab=86.80  E-value=1.3  Score=33.62  Aligned_cols=37  Identities=19%  Similarity=0.180  Sum_probs=28.0

Q ss_pred             CCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEE
Q 048602           52 NGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFY   88 (176)
Q Consensus        52 ~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~   88 (176)
                      ....|-.|.+|+|.=.+.++.-....+++||++|...
T Consensus        40 ~~G~PA~gv~V~L~~~~~~~~~~~l~~~~Td~DGR~~   76 (147)
T 4ank_A           40 VRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELH   76 (147)
T ss_dssp             TTTEECCSCEEEEEEECTTSCEEEEEEEECCTTSEEC
T ss_pred             CCCcCCCCCEEEEEEECCCCCeEEEEEEEeCCCCCCC
Confidence            3447899999999877665543334799999999864

>2bum_B Protocatechuate 3,4-dioxygenase beta chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_B 1eoa_B 1eob_B* 1eoc_B* 1eo9_B 2buq_B 2bur_B* 2bux_B 2buy_B 2buz_B* 2bv0_B* 2buu_B* 2but_B* 2buv_B* 2buw_B*

Probab=80.83  E-value=5.2  Score=32.54  Aligned_cols=52  Identities=21%  Similarity=0.146  Sum_probs=37.2

Q ss_pred             CCCceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCc---------------eEEEEEeEcCCCceEEEE
Q 048602           28 SAGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSR---------------AMCYKSDETDEQGQFYMT   90 (176)
Q Consensus        28 ~~~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~---------------~~~~~~~~TD~~G~F~i~   90 (176)
                      ....+.|+|.|.=.+|           .||+||.|.|==-|..|.               ........||++|.|.+.
T Consensus        75 ~G~~i~v~G~V~D~~G-----------~Pv~~A~VeiWqada~G~Y~~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F~  141 (241)
T 2bum_B           75 IGERVIVHGYVRDQFG-----------RPVKNALVEVWQANASGRYRHPNDQYIGAMDPNFGGCGRMLTDDNGYYVFR  141 (241)
T ss_dssp             SSCEEEEEEEEEETTS-----------CBCCSCEEEEECCCTTSCCSSTTCCCSSCCCTTCCCEEEEECCTTSEEEEE
T ss_pred             CCcEEEEEEEEECCCC-----------CCCCCcEEEEEecCCCceeCCCCCCcccccCCCccceeEEEeCCCceEEEE
Confidence            3457999999996554           799999999943332221               112467789999999986

>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold, C-terminal, A transthyretin-like domain, hydrolase; HET: NAG GEM; 2.70A {Drosophila melanogaster}

Probab=80.78  E-value=1.7  Score=38.08  Aligned_cols=44  Identities=16%  Similarity=0.236  Sum_probs=31.0

Q ss_pred             EEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEEccc
Q 048602           33 HVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRI   94 (176)
Q Consensus        33 ~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~~~   94 (176)
                      .|.|+|.=.           ...||+||+|.|+  +...     ...+||++|.|.+.|+..
T Consensus       338 gv~G~V~D~-----------~G~pi~gA~V~v~--g~~~-----~~~~Td~~G~y~~~l~pG  381 (435)
T 3mn8_A          338 GIKGLVTDA-----------SGFPIADANVYVA--GLEE-----KPMRTSKRGEYWRLLTPG  381 (435)
T ss_dssp             SEEEEEECS-----------SSCBCTTCEEEET--TCTT-----SCEECCTTCEEEECCCSE
T ss_pred             eeEEEEECC-----------CCCccCceEEEEe--cccc-----cceEeCCCCeEEEecCCC
Confidence            588999632           1279999999993  3111     245799999998876543

>2boy_A 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: BHO LPP; 1.9A {Rhodococcus opacus}

Probab=80.31  E-value=5.4  Score=32.75  Aligned_cols=50  Identities=24%  Similarity=0.327  Sum_probs=35.6

Q ss_pred             CceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCc----------eEEEEEeEcCCCceEEEE
Q 048602           30 GVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSR----------AMCYKSDETDEQGQFYMT   90 (176)
Q Consensus        30 ~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~----------~~~~~~~~TD~~G~F~i~   90 (176)
                      ..+.|+|.|.=.+|           .||+||.|.|==-+..|.          ........||++|.|.+.
T Consensus       101 ~~l~l~G~V~D~~G-----------~Pv~~A~VeiWqada~G~Y~~~~~~~~~~~~rGr~~Td~~G~y~F~  160 (254)
T 2boy_A          101 DTLIFRGEVVDQEG-----------APLADVLLDMWQADAAGEYSFINPTLPDYLFRGKIRTDENGRFTLR  160 (254)
T ss_dssp             CEEEEEEEEECTTS-----------CBCCSCEEEEECCCTTSCCBTTBTTSCTTTTEEEEECCTTSEEEEE
T ss_pred             CEEEEEEEEECCCC-----------CCCCCCEEEEEcCCCCCccCCcCCCCCCCCCeeEEEeCCCceEEEE
Confidence            45899999986544           799999999943332221          111356789999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	176
d1vlfn1	79	Transhydroxylase beta subunit, BthL, C-terminal do	95.91
d1h8la1	79	Carboxypeptidase D C-terminal domain {Crested duck	94.62
d1uwya1	107	Carboxypeptidase M C-terminal domain {Human (Homo	89.96
d3pccm_	236	Protocatechuate-3,4-dioxygenase, beta chain {Pseud	89.26
d2burb1	238	Protocatechuate-3,4-dioxygenase, beta chain {Acine	80.8

>d1vlfn1 b.3.5.1 (N:196-274) Transhydroxylase beta subunit, BthL, C-terminal domain {Pelobacter acidigallici [TaxId: 35816]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Cna protein B-type domain
family: Cna protein B-type domain
domain: Transhydroxylase beta subunit, BthL, C-terminal domain
species: Pelobacter acidigallici [TaxId: 35816]

Probab=95.91  E-value=0.008  Score=39.36  Aligned_cols=46  Identities=24%  Similarity=0.351  Sum_probs=32.8

Q ss_pred             ceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEE-Eccc
Q 048602           31 VIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMT-VDRI   94 (176)
Q Consensus        31 ~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~-l~~~   94 (176)
                      .++|.|.|- |            ..||+||.|.|.  +. +..+  ....||++|.|+++ ++..
T Consensus         2 n~~~~gi~~-~------------G~~v~gA~V~L~--~~-~~~v--~~t~Td~~G~F~f~~l~~G   48 (79)
T d1vlfn1           2 NYVTAGILV-Q------------GDCFEGAKVVLK--SG-GKEV--ASAETNFFGEFKFDALDNG   48 (79)
T ss_dssp             EEEEEEEEE-T------------TEECTTCEEEEE--ET-TEEE--EEEECCTTSEEEEEEECSE
T ss_pred             CcEEeeEEE-C------------CccccccEEEEE--CC-CCeE--EeeEECCCCcEEEEecCCC
Confidence            457778774 2            279999999995  32 3333  46789999999997 5554

>d1h8la1 b.3.2.1 (A:305-383) Carboxypeptidase D C-terminal domain {Crested duck (Lophonetta specularioides) [TaxId: 8836]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Carboxypeptidase regulatory domain-like
family: Carboxypeptidase regulatory domain
domain: Carboxypeptidase D C-terminal domain
species: Crested duck (Lophonetta specularioides) [TaxId: 8836]

Probab=94.62  E-value=0.023  Score=36.38  Aligned_cols=43  Identities=19%  Similarity=0.212  Sum_probs=30.4

Q ss_pred             EEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEEccc
Q 048602           34 VGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRI   94 (176)
Q Consensus        34 V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~~~   94 (176)
                      |.|+|.=.          ....||+||.|.|.  +.      .....||++|.|.+.+|.-
T Consensus         2 I~G~V~d~----------~tg~pi~~a~V~v~--~~------~~~~~Td~~G~f~~~l~~G   44 (79)
T d1h8la1           2 IWGFVLDA----------TDGRGILNATISVA--DI------NHPVTTYKDGDYWRLLVQG   44 (79)
T ss_dssp             EEEEEEET----------TTCSBCTTCEEEET--TE------EEEEECCTTSEEEECCCSE
T ss_pred             cEEEEEEC----------CCCCCcCCeEEEEe--Cc------cccEEecCCCCEEEEeecc
Confidence            66777632          23489999999983  21      1356799999998877654

>d1uwya1 b.3.2.1 (A:297-403) Carboxypeptidase M C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Carboxypeptidase regulatory domain-like
family: Carboxypeptidase regulatory domain
domain: Carboxypeptidase M C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.96  E-value=0.11  Score=34.93  Aligned_cols=44  Identities=30%  Similarity=0.469  Sum_probs=29.8

Q ss_pred             EEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEEccc
Q 048602           34 VGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRI   94 (176)
Q Consensus        34 V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~~~   94 (176)
                      |.|+|. |.          ...||+||.|.|+  +.+..    ....||++|+|.+.++..
T Consensus         2 I~G~V~-D~----------~g~pi~~A~V~i~--~~~~~----~~~~td~~G~f~~~~~~g   45 (107)
T d1uwya1           2 VKGQVF-DQ----------NGNPLPNVIVEVQ--DRKHI----CPYRTNKYGEYYLLLLPG   45 (107)
T ss_dssp             EEEEEE-CT----------TSCBCCSCEEEET--TCCCS----SCCBCCTTCEEEECCCSE
T ss_pred             cEEEEE-CC----------CCCCcCcEEEEEE--ccccc----ceeecchhheeeeecCCc
Confidence            678885 22          2369999999993  32211    234799999998876554

>d3pccm_ b.3.6.1 (M:) Protocatechuate-3,4-dioxygenase, beta chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Aromatic compound dioxygenase
family: Aromatic compound dioxygenase
domain: Protocatechuate-3,4-dioxygenase, beta chain
species: Pseudomonas putida [TaxId: 303]

Probab=89.26  E-value=0.43  Score=37.02  Aligned_cols=52  Identities=19%  Similarity=0.162  Sum_probs=38.9

Q ss_pred             CCCceEEEEEEEcccCCCCCccccCCCccCCCCEEEE-EecCCCC--------------ceEEEEEeEcCCCceEEEE
Q 048602           28 SAGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSL-TCMDDRS--------------RAMCYKSDETDEQGQFYMT   90 (176)
Q Consensus        28 ~~~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v-~C~~~~~--------------~~~~~~~~~TD~~G~F~i~   90 (176)
                      ....+.|.|+|.=.+|           .||+||.|.| +|.....              ....+....||++|.|.+.
T Consensus        74 ~Ge~i~v~GrV~D~~g-----------~Pv~~a~VEIWQana~G~Y~~~~d~~~~~~d~~f~grGr~~Td~~G~y~F~  140 (236)
T d3pccm_          74 IGERIIVAGRVVDQYG-----------KPVPNTLVEMWQANAGGRYRHKNDRYLAPLDPNFGGVGRCLTDSDGYYSFR  140 (236)
T ss_dssp             SSCEEEEEEEEEETTS-----------CBCTTCEEEEECCCTTSCCSSTTCCCSSCCCTTCCCEEEEECCTTSEEEEE
T ss_pred             CCCEEEEEEEEECCCC-----------CCcCCcEEEEEecCCCceECCCccccccccCCccceEEEEEcCCCCeEEEE
Confidence            3567999999995544           7999999999 7764320              0124577789999999885

>d2burb1 b.3.6.1 (B:303-540) Protocatechuate-3,4-dioxygenase, beta chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Aromatic compound dioxygenase
family: Aromatic compound dioxygenase
domain: Protocatechuate-3,4-dioxygenase, beta chain
species: Acinetobacter calcoaceticus, adp1 [TaxId: 471]

Probab=80.80  E-value=2.5  Score=32.50  Aligned_cols=51  Identities=22%  Similarity=0.161  Sum_probs=37.2

Q ss_pred             CCceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCc---------------eEEEEEeEcCCCceEEEE
Q 048602           29 AGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSR---------------AMCYKSDETDEQGQFYMT   90 (176)
Q Consensus        29 ~~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~---------------~~~~~~~~TD~~G~F~i~   90 (176)
                      ...+.|.|+|.=.+|           .||+||.|.|==-+..|+               ...+....||++|.|.+.
T Consensus        73 Ge~i~v~G~V~D~~g-----------~Pv~~A~VEiWQada~G~Y~~~~d~~~~~~d~~f~grGr~~TD~~G~y~F~  138 (238)
T d2burb1          73 GERVIVHGYVRDQFG-----------RPVKNALVEVWQANASGRYRHPNDQYIGAMDPNFGGCGRMLTDDNGYYVFR  138 (238)
T ss_dssp             SCEEEEEEEEEETTS-----------CBCCSCEEEEECCCTTSCCSSTTCCCSSCCCTTCCCEEEEECCTTSEEEEE
T ss_pred             cCEEEEEEEEECCCC-----------CCCCCcEEEEEecCCCcccCCccccccCccCCCcceEEEEEeCCCCeEEEE
Confidence            467999999996544           799999999943333221               112467789999999986