Citrus Sinensis ID: 048606

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------
Protein Sequence
SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILKLCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFAELKVESKLKETTTKLEQQLAEEQAARLKGEEAAQLAQRKSNDEIRKLKENLKRAQREIEDQMHESNEYQIKRITEMVESNLKETTTRLEQQLAEEQVARLKGEEVAQVAQRKSNDKIHKLRDNLESAQRETEDQMHESYEDQIKRITEVVFFMLLLLTSKYDMHIVHF
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHcHHHHccEEEEEEcccccccccccHHHHHcccccccHHHHHHHccccEEEEEcccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHcHHHccEEEEEEEcccccccccccHHHHHHccccHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEc
Coil and Loop (DISEMBL)
SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTggddlednEKTLEDylglecpkpLKEILKLCDhrcvlfdnktkyKVKRTEQVQQLLSLVNAvnvknggqpytnEFFAELKVESKLKETTTKLEQQLAEEQAARLKGEEAAQLAQRKSNDEIRKLKENLKRAQREIEDQMHESNEYQIKRITEMVESNLKETTTRLEQQLAEEQVARLKGEEVAQVAQRKSNDKIHKLRDNLESAQRETEDQMHESYEDQIKRITEVVFFMLLLLTskydmhivhf
Flexible Loop (DISEMBL)
SRFSQEEEAAVHHLqtlfgkkiFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILKLCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFAELKVESKLKETTTKLEQQLAEEQAARLKGEEAaqlaqrksndeirKLKENLKRAQReiedqmhesneyqiKRITEMVESNLKETTTRLEQQLAEEQVArlkgeevaqvaqrksndkihklrDNLESAQRETEDQMHESYEDQIKRITEVVFFMLLLLtskydmhivhf
Low Complexity Region (SEG)
SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILKLCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFAELKVESKLKETTTKLEQQLAEEQAARLKGEEAAQLAQRKSNDEIRKLKENLKRAQREIEDQMHESNEYQIKRITEMVESNLKETTTRLEQQLAEEQVARLKGEEVAQVAQRKSNDKIHKLRDNLESAQRETEDQMHESYEDQIKRITEVVFFMLLLLTSKYDMHIVHF
Disordered region (IsUnstruct)
**********VHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILKLCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFAELK******************************************************************************************************************************************QIKRITEVVFFMLLLLTSKYDMHIV**
Disordered Region (DISOPRED)
SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILKLCDHRCVLFDNKTKYK*KRTEQVQQLLSLVNAVNVKNGGQPYTNEFFA**********************************************************************************************************************************************IKRITEVVFFMLLLLTSKYDMHIVHF
Disordered Region (DISEMBL)
**********VHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILKLCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFAELKVESKLKETTTKLEQQLAEEQAARLKGEEAAQLAQRKSNDEIRKLKENLKRAQREIEDQMHESNEYQIKRITEMVESNLKETTTRLEQQLAEEQVARLKGEEVAQVAQRKSNDKIHKLRDNL**************YEDQIKRITEVVFFMLLLLTSKYDMHIVHF
Disordered Region (DISPRO)
*RFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILKLCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFAELKVESKLKETTTKLEQQLAEEQAARLKGEEAAQLAQRKSNDEIRKLKENLKRAQREIEDQMHESNEYQIKRITEMVESNLKETTTRLEQQLAEEQVARLKGEEVAQVAQRKSNDKIHKLRDNLESAQRETEDQMHESYEDQIKRITEVVFFMLLLLTSKYDMHIVHF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILKLCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFAELKVxxxxxxxxxxxxxxxxxxxxxRLKGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRITEMVESNLKETTTRLEQQLAEEQVARLKGEEVAQVAxxxxxxxxxxxxxxxxxxxxxxxxxxxxSYEDQIKRITEVVFFMLLLLTSKYDMHIVHF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	276	2.2.26 [Sep-21-2011]
O81025	463	Putative protein PHLOEM P	no	no	0.597	0.356	0.416	4e-28
P54120	353	Protein AIG1 OS=Arabidops	no	no	0.583	0.456	0.405	4e-25
Q8WWP7	306	GTPase IMAP family member	yes	no	0.474	0.428	0.294	6e-10
Q75N62	688	GTPase IMAP family member	no	no	0.384	0.154	0.378	9e-09
Q8ND71	665	GTPase IMAP family member	no	no	0.387	0.160	0.348	3e-08
Q4KLG2	688	GTPase IMAP family member	no	no	0.318	0.127	0.406	3e-07
Q8NHV1	300	GTPase IMAP family member	no	no	0.376	0.346	0.287	3e-07
Q8K3K9	310	GTPase IMAP family member	no	no	0.365	0.325	0.352	8e-07
P70224	277	GTPase IMAP family member	no	no	0.376	0.375	0.289	1e-06
Q9NUV9	329	GTPase IMAP family member	no	no	0.373	0.313	0.308	2e-06

>sp|O81025|P2A03_ARATH Putative protein PHLOEM PROTEIN 2-LIKE A3 OS=Arabidopsis thaliana GN=PP2A3 PE=4 SV=1

 Score =  125 bits (313), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 72/173 (41%), Positives = 109/173 (63%), Gaps = 8/173 (4%)

Query: 1   SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILK 60
            R S+EEE+ V+ LQ +FG +I DY IVVFTGGDDLE++++TL+DY    CP+ L ++L+
Sbjct: 101 GRISKEEESTVNTLQCIFGSQILDYCIVVFTGGDDLEEDDQTLDDYFRAGCPEFLTKVLR 160

Query: 61  LCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFAELKVES------ 114
           LC  R VLFDNK+K + K+ EQV+QLL+ V  V  + GG PYT +   ++K E+      
Sbjct: 161 LCGGRKVLFDNKSKDEKKKVEQVKQLLARVENVGEQTGGIPYTYQLHRKIKEENDERLRE 220

Query: 115 --KLKETTTKLEQQLAEEQAARLKGEEAAQLAQRKSNDEIRKLKENLKRAQRE 165
             ++ E+  + E +LAE Q   L  +E  Q+ + K+   I + + N K  ++E
Sbjct: 221 EERVIESKNRAEAELAEMQQNLLMEKEKLQMEEAKNKQLIAQAEANEKLMEQE 273

Arabidopsis thaliana (taxid: 3702)

>sp|P54120|AIG1_ARATH Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 SV=1

 Score =  115 bits (287), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/190 (40%), Positives = 103/190 (54%), Gaps = 29/190 (15%)

Query: 1   SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILK 60
           +R SQEEE  +  LQ LFG KI DY+IVVFTGGD LED+  TLEDYLG   P  LK +L 
Sbjct: 138 TRISQEEEMVLSTLQVLFGSKIVDYLIVVFTGGDVLEDDGMTLEDYLGDNMPDFLKRVLI 197

Query: 61  LCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFAELKVESKLKETT 120
           LC  R +LFDNKTK   K+T+QV +LL L++ V  +N   PYT+E +  +K E+      
Sbjct: 198 LCGQRMILFDNKTKDDEKKTKQVHELLKLIDLVRKQNNNIPYTDEMYHMIKEEN------ 251

Query: 121 TKLEQQLAEEQAARLKGEEAAQLAQRKSNDEIRKLKENLKRAQREIEDQMHESNEYQIKR 180
              E+   E++    KG    QLA                     +  ++   NE  +K 
Sbjct: 252 ---ERHKKEQEELESKGHSEEQLAA--------------------LMKELQIMNERNLKA 288

Query: 181 ITEMVESNLK 190
           + EM+E N+K
Sbjct: 289 MAEMMEKNMK 298

Arabidopsis thaliana (taxid: 3702)

>sp|Q8WWP7|GIMA1_HUMAN GTPase IMAP family member 1 OS=Homo sapiens GN=GIMAP1 PE=1 SV=1

 Score = 64.7 bits (156), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 78/136 (57%), Gaps = 5/136 (3%)

Query: 1   SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILK 60
            RF+ +++ AV  ++ +FG+ +  +M++VFT  +DL     +L DY+     + L+E++ 
Sbjct: 122 GRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGG--SLHDYVSNTENRALRELVA 179

Query: 61  LCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFAELKVESKLKETT 120
            C  R   FDN+   + ++  QV+QLL +V  + +++ G  Y+NE + EL    +     
Sbjct: 180 ECGGRVCAFDNRATGR-EQEAQVEQLLGMVEGLVLEHKGAHYSNEVY-ELAQVLRWAGPE 237

Query: 121 TKLEQQLAEEQAARLK 136
            +L +++AE  AAR++
Sbjct: 238 ERL-RRVAERVAARVQ 252

May regulate lymphocyte survival. Required for normal levels of mature T-lymphocytes and mature B-cells.

Homo sapiens (taxid: 9606)

>sp|Q75N62|GIMA8_MOUSE GTPase IMAP family member 8 OS=Mus musculus GN=Gimap8 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 62/111 (55%), Gaps = 5/111 (4%)

Query: 1   SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILK 60
            RF+QE+E  V  L+  F + I  YMIV+FT  +DL D +  L DY      K LK+ILK
Sbjct: 572 GRFTQEDEVVVEQLEASFEENIMKYMIVLFTRKEDLGDGD--LHDYTNNTKNKALKKILK 629

Query: 61  LCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFAELK 111
            C+ R   F+NK   + + T QV+ LL + N+  +K     ++N +  +LK
Sbjct: 630 KCNGRVCAFNNKETGEDQET-QVKGLLKIANS--LKKNYDEHSNSWVGQLK 677

Exerts an anti-apoptotic effect in the immune system and is involved in responses to infections.

Mus musculus (taxid: 10090)

>sp|Q8ND71|GIMA8_HUMAN GTPase IMAP family member 8 OS=Homo sapiens GN=GIMAP8 PE=1 SV=2

 Score = 59.3 bits (142), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 62/112 (55%), Gaps = 5/112 (4%)

Query: 1   SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILK 60
            RF++E++ AV  L+ +FG     Y I++FT  +DL      LED++     K L+ I K
Sbjct: 535 GRFTEEDKTAVAKLEAIFGADFTKYAIMLFTRKEDL--GAGNLEDFMKNSDNKALRRIFK 592

Query: 61  LCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNG--GQPYTNEFFAEL 110
            C  R   F+NK   + + T QV+ LL+ VN +  ++G  G P+T E  ++L
Sbjct: 593 KCGRRVCAFNNKETGQAQET-QVKALLTKVNDLRKESGWSGYPHTQENVSKL 643

Exerts an anti-apoptotic effect in the immune system and is involved in responses to infections.

Homo sapiens (taxid: 9606)

>sp|Q4KLG2|GIMA8_RAT GTPase IMAP family member 8 OS=Rattus norvegicus GN=Gimap8 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 51/91 (56%), Gaps = 3/91 (3%)

Query: 1   SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILK 60
            RF+QE+EA V  L+  F + I  YMIV+FT  +DL D +  L D+      K LK I K
Sbjct: 572 GRFTQEDEAVVEQLEASFEENIMKYMIVLFTRKEDLGDGD--LYDFTNNTKNKVLKRIFK 629

Query: 61  LCDHRCVLFDNKTKYKVKRTEQVQQLLSLVN 91
            C  R   F+NK   + + T QV+ LL++ N
Sbjct: 630 KCKGRVCAFNNKETGEDQET-QVKALLTIAN 659

Exerts an anti-apoptotic effect in the immune system and is involved in responses to infections.

Rattus norvegicus (taxid: 10116)

>sp|Q8NHV1|GIMA7_HUMAN GTPase IMAP family member 7 OS=Homo sapiens GN=GIMAP7 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 62/108 (57%), Gaps = 4/108 (3%)

Query: 1   SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILK 60
            R+++EE+  V  ++ +FGK    +M+++FT  ++LE   ++  D++  +    LK I+K
Sbjct: 102 GRYTEEEQKTVALIKAVFGKSAMKHMVILFTRKEELEG--QSFHDFIA-DADVGLKSIVK 158

Query: 61  LCDHRCVLFDNKTK-YKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFF 107
            C +RC  F N  K  K ++  QVQ+L+ L+  +   N G  ++++ +
Sbjct: 159 ECGNRCCAFSNSKKTSKAEKESQVQELVELIEKMVQCNEGAYFSDDIY 206

Homo sapiens (taxid: 9606)

>sp|Q8K3K9|GIMA4_RAT GTPase IMAP family member 4 OS=Rattus norvegicus GN=Gimap4 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 64/105 (60%), Gaps = 4/105 (3%)

Query: 3   FSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILKLC 62
           ++ EE  A   L ++F KK   +MI++ T  DDLED +  + +YL    P+ L+E++   
Sbjct: 126 YTVEEHKATRKLLSMFEKKARRFMILLLTRKDDLEDTD--IHEYLE-TAPEVLQELIYEF 182

Query: 63  DHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFF 107
            +R  LF+NK     ++ EQ +QLL+LV ++  +NGG+ +TN+ +
Sbjct: 183 RNRYCLFNNKAS-GAEQEEQKRQLLTLVQSMVRENGGKYFTNKMY 226

May play a role in regulating lymphocyte apoptosis. Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium.

Rattus norvegicus (taxid: 10116)

>sp|P70224|GIMA1_MOUSE GTPase IMAP family member 1 OS=Mus musculus GN=Gimap1 PE=1 SV=3

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 60/107 (56%), Gaps = 3/107 (2%)

Query: 1   SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILK 60
            RF+ ++  A+  ++ LFGK++    +VVFT  +DL  +  +L+DY+     + L++++ 
Sbjct: 98  GRFTMQDSQALAAVKRLFGKQVMARTVVVFTRQEDLAGD--SLQDYVHCTDNRALRDLVA 155

Query: 61  LCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFF 107
            C  R    +N+     +R  Q +QLL +V  +  ++GG  Y+NE +
Sbjct: 156 ECGGRVCALNNRATGS-EREAQAEQLLGMVACLVREHGGAHYSNEVY 201

May regulate lymphocyte survival. Required for normal levels of mature T-lymphocytes and mature B-cells.

Mus musculus (taxid: 10090)

>sp|Q9NUV9|GIMA4_HUMAN GTPase IMAP family member 4 OS=Homo sapiens GN=GIMAP4 PE=1 SV=1

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 4/107 (3%)

Query: 1   SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILK 60
            R+++EE  A   +  +FG++   +MI++FT  DDL D    L DYL  E P+ +++++ 
Sbjct: 124 GRYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDT--NLHDYL-REAPEDIQDLMD 180

Query: 61  LCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFF 107
           +   R    +NK     ++  Q  QLL L+  V  +N    YTN  +
Sbjct: 181 IFGDRYCALNNKAT-GAEQEAQRAQLLGLIQRVVRENKEGCYTNRMY 226

May play a role in regulating lymphocyte apoptosis (By similarity). Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
255539412	339	aig1, putative [Ricinus communis] gi|223	0.608	0.495	0.596	2e-60
296089429	345	unnamed protein product [Vitis vinifera]	0.608	0.486	0.586	8e-59
225460273	340	PREDICTED: protein AIG1 [Vitis vinifera]	0.608	0.494	0.586	9e-59
363814318	336	uncharacterized protein LOC100807910 [Gl	0.601	0.494	0.549	2e-54
356526433	350	PREDICTED: protein AIG1-like [Glycine ma	0.601	0.474	0.545	5e-54
449464872	341	PREDICTED: protein AIG1-like [Cucumis sa	0.630	0.510	0.557	3e-53
224146305	335	predicted protein [Populus trichocarpa]	0.612	0.504	0.534	6e-53
4097585	344	NTGP4, partial [Nicotiana tabacum]	0.655	0.526	0.491	3e-50
388500386	335	unknown [Lotus japonicus]	0.601	0.495	0.497	2e-48
388511317	335	unknown [Lotus japonicus]	0.601	0.495	0.492	8e-48

>gi|255539412|ref|XP_002510771.1| aig1, putative [Ricinus communis] gi|223551472|gb|EEF52958.1| aig1, putative [Ricinus communis]

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 127/213 (59%), Positives = 146/213 (68%), Gaps = 45/213 (21%)

Query: 1   SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILK 60
           +RFSQEEEAA+  LQTLFG KIFDYMIVVFTGGD+LEDN++TLEDYLG ECP+PL+EIL 
Sbjct: 115 TRFSQEEEAALRSLQTLFGSKIFDYMIVVFTGGDELEDNDETLEDYLGRECPQPLQEILT 174

Query: 61  LCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFAELK--------- 111
           LC +R VLFDNKTK + KR EQV QLLSLVN V  +NGGQPYT+E F ELK         
Sbjct: 175 LCKNRLVLFDNKTKDEFKRAEQVHQLLSLVNLVIAENGGQPYTDELFVELKARAIKLRDQ 234

Query: 112 ------------------------------------VESKLKETTTKLEQQLAEEQAARL 135
                                               VE KL+ETT +LEQQLAEEQAARL
Sbjct: 235 QEEVDSLKGYSKGEILELKEQMHRSYEEQLKRITEMVELKLRETTNRLEQQLAEEQAARL 294

Query: 136 KGEEAAQLAQRKSNDEIRKLKENLKRAQREIED 168
           K EE AQLAQ KSNDEIR+L+ENL+RAQ+E ++
Sbjct: 295 KAEEKAQLAQMKSNDEIRQLRENLERAQKETQE 327

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089429|emb|CBI39248.3| unnamed protein product [Vitis vinifera]

 Score =  233 bits (593), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 125/213 (58%), Positives = 146/213 (68%), Gaps = 45/213 (21%)

Query: 1   SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILK 60
           +RFS+EEEAA+H LQTLFG KI DYMIVVFTGGD+LEDN++TLEDYLG ECP+PLK+ L 
Sbjct: 120 TRFSKEEEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDETLEDYLGRECPEPLKQTLL 179

Query: 61  LCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFAELK--------- 111
           LC +R VLFDNKTK + K+ EQVQ+LLSLVN+V ++NGGQPYT+E F ELK         
Sbjct: 180 LCQNRLVLFDNKTKDEAKKYEQVQKLLSLVNSVILQNGGQPYTDELFMELKKGAQKLRDQ 239

Query: 112 ------------------------------------VESKLKETTTKLEQQLAEEQAARL 135
                                               VE KL+ETT KLE+QLAEEQAARL
Sbjct: 240 TEEVDSLEGYSKREILVLKEQMHKSYEEQLKRITEMVEVKLRETTMKLERQLAEEQAARL 299

Query: 136 KGEEAAQLAQRKSNDEIRKLKENLKRAQREIED 168
           K EE AQ AQ  SNDEIRKL+ENL+RAQRE E+
Sbjct: 300 KAEEIAQRAQLASNDEIRKLRENLERAQRETEE 332

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460273|ref|XP_002281996.1| PREDICTED: protein AIG1 [Vitis vinifera]

 Score =  233 bits (593), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 125/213 (58%), Positives = 146/213 (68%), Gaps = 45/213 (21%)

Query: 1   SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILK 60
           +RFS+EEEAA+H LQTLFG KI DYMIVVFTGGD+LEDN++TLEDYLG ECP+PLK+ L 
Sbjct: 115 TRFSKEEEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDETLEDYLGRECPEPLKQTLL 174

Query: 61  LCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFAELK--------- 111
           LC +R VLFDNKTK + K+ EQVQ+LLSLVN+V ++NGGQPYT+E F ELK         
Sbjct: 175 LCQNRLVLFDNKTKDEAKKYEQVQKLLSLVNSVILQNGGQPYTDELFMELKKGAQKLRDQ 234

Query: 112 ------------------------------------VESKLKETTTKLEQQLAEEQAARL 135
                                               VE KL+ETT KLE+QLAEEQAARL
Sbjct: 235 TEEVDSLEGYSKREILVLKEQMHKSYEEQLKRITEMVEVKLRETTMKLERQLAEEQAARL 294

Query: 136 KGEEAAQLAQRKSNDEIRKLKENLKRAQREIED 168
           K EE AQ AQ  SNDEIRKL+ENL+RAQRE E+
Sbjct: 295 KAEEIAQRAQLASNDEIRKLRENLERAQRETEE 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814318|ref|NP_001242800.1| uncharacterized protein LOC100807910 [Glycine max] gi|255639255|gb|ACU19926.1| unknown [Glycine max]

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 116/211 (54%), Positives = 139/211 (65%), Gaps = 45/211 (21%)

Query: 1   SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILK 60
           +RF++EEE A+  LQTLFG KI DYMIVVFTGGD+LE+N +TLEDYLG ECP+PLKEIL 
Sbjct: 115 TRFTEEEETALRSLQTLFGSKIVDYMIVVFTGGDELEENAETLEDYLGRECPEPLKEILV 174

Query: 61  LCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFAELK--------- 111
           LCD+RCVLFDNKTK + KR  QVQQLLS VN V  +NGG+PYT+E F +LK         
Sbjct: 175 LCDNRCVLFDNKTKDEGKRFGQVQQLLSFVNTVLSRNGGRPYTDELFTQLKKGAMELHNQ 234

Query: 112 ------------------------------------VESKLKETTTKLEQQLAEEQAARL 135
                                               VESKL+E T +LEQQL EEQAARL
Sbjct: 235 QREVDSLKGYSKGEILKFKKQMQQTYDDQLKRITEIVESKLREATMRLEQQLVEEQAARL 294

Query: 136 KGEEAAQLAQRKSNDEIRKLKENLKRAQREI 166
           K EE A LAQ +S+DEIRKL+E+L++A  E+
Sbjct: 295 KAEENAMLAQMRSDDEIRKLREHLEKAHEEL 325

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526433|ref|XP_003531822.1| PREDICTED: protein AIG1-like [Glycine max]

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 115/211 (54%), Positives = 141/211 (66%), Gaps = 45/211 (21%)

Query: 1   SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILK 60
           +RF++EEE A+  LQTLFG KI DYMIVVFTGGD+LE+N++TLEDYLG ECP+PLKEIL 
Sbjct: 129 TRFTEEEETALRSLQTLFGSKIVDYMIVVFTGGDELEENDETLEDYLGRECPEPLKEILV 188

Query: 61  LCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFAELK--------- 111
           LC++RCVLFDNKTK + KR  QVQQLLS VN V  +NGG+PYT+E F +LK         
Sbjct: 189 LCENRCVLFDNKTKDEGKRFGQVQQLLSFVNMVLSRNGGRPYTDELFTQLKKGAMELHNQ 248

Query: 112 ------------------------------------VESKLKETTTKLEQQLAEEQAARL 135
                                               VESKL+E T +LE+QLAEEQAARL
Sbjct: 249 QREVDSLKGYSKGEILEFKKQMQQTYDEQLKRITEMVESKLREATMRLEEQLAEEQAARL 308

Query: 136 KGEEAAQLAQRKSNDEIRKLKENLKRAQREI 166
           K EE A LAQ +S+DEIRKL+E+L++A  E+
Sbjct: 309 KAEENAMLAQMRSDDEIRKLREHLEKAHEEL 339

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464872|ref|XP_004150153.1| PREDICTED: protein AIG1-like [Cucumis sativus] gi|449520867|ref|XP_004167454.1| PREDICTED: protein AIG1-like [Cucumis sativus]

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 122/219 (55%), Positives = 147/219 (67%), Gaps = 45/219 (20%)

Query: 1   SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILK 60
           +RFS EEEAA+  LQTLFG KI +YMIVVFTGGD+LE+NE+TLEDYLG  CP PLK+IL 
Sbjct: 119 TRFSLEEEAALRSLQTLFGSKIVNYMIVVFTGGDELEENEETLEDYLGRSCPDPLKDILA 178

Query: 61  LCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFAELK--------- 111
           LC +RCVLFDNKTK + ++  QVQQLLSLVN + ++NGGQPY++E F+ELK         
Sbjct: 179 LCQNRCVLFDNKTKDEGRKVGQVQQLLSLVNGIVMQNGGQPYSDELFSELKAGAMKLRDQ 238

Query: 112 ------------------------------------VESKLKETTTKLEQQLAEEQAARL 135
                                               VESKL+ETT +LEQQLAEEQAARL
Sbjct: 239 QKEVDSLEGYTRQELKELKEQMHRSYDEQLKRITEMVESKLRETTMRLEQQLAEEQAARL 298

Query: 136 KGEEAAQLAQRKSNDEIRKLKENLKRAQREIEDQMHESN 174
           K EE AQ AQRKSNDEIR+L+E+L+RAQ E+  +   SN
Sbjct: 299 KAEENAQHAQRKSNDEIRQLREHLQRAQEELRKRGESSN 337

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146305|ref|XP_002325957.1| predicted protein [Populus trichocarpa] gi|222862832|gb|EEF00339.1| predicted protein [Populus trichocarpa]

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 115/215 (53%), Positives = 143/215 (66%), Gaps = 46/215 (21%)

Query: 1   SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILK 60
           +RFSQEEEAA+  LQTLFG KI DYMIVVFTGGD+LEDN++TLEDYLG ECP+PLKE+L 
Sbjct: 115 TRFSQEEEAALRSLQTLFGSKILDYMIVVFTGGDELEDNDETLEDYLGRECPQPLKEVLT 174

Query: 61  LCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFAELK--------- 111
           LC++R VLF+NKTK  +K  EQVQ+LLSLVN V  +NGGQPY++E FAE++         
Sbjct: 175 LCENRRVLFNNKTKDVLKGVEQVQELLSLVNRVIEQNGGQPYSDELFAEIQKGEMNFRGQ 234

Query: 112 -------------------------------------VESKLKETTTKLEQQLAEEQAAR 134
                                                VE KLKE T  LE++LAEEQAAR
Sbjct: 235 QEEVDSLKGNFSIGEISELQEQMKRQYEDQLKRVTDMVEMKLKEATGNLERRLAEEQAAR 294

Query: 135 LKGEEAAQLAQRKSNDEIRKLKENLKRAQREIEDQ 169
           L+ EE+AQL QRKSN+EIR L+E L++A  E+ ++
Sbjct: 295 LRAEESAQLEQRKSNEEIRMLRERLEKAHEELRNK 329

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4097585|gb|AAD09518.1| NTGP4, partial [Nicotiana tabacum]

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 111/226 (49%), Positives = 147/226 (65%), Gaps = 45/226 (19%)

Query: 1   SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILK 60
           +RFS+EE+AAV  L+  FG KI DYM++VFTGGDDLEDNE+TLEDYLG +CP+PLK+IL 
Sbjct: 118 TRFSREEQAAVQSLREFFGGKISDYMVLVFTGGDDLEDNEETLEDYLGRDCPEPLKDILA 177

Query: 61  LCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFAELK--------- 111
           +C +R VLFDNK+K  +K+ +Q++QLLSLVN V   NGG+PYT++ F ELK         
Sbjct: 178 MCGNRRVLFDNKSKDHLKKADQLKQLLSLVNVVVENNGGKPYTDDLFKELKKGAIKLRNQ 237

Query: 112 ------------------------------------VESKLKETTTKLEQQLAEEQAARL 135
                                               VESKLK+TT +LE+QLA+EQAARL
Sbjct: 238 ATEVNNLVGYSKQEILELKEQMQKSYEEQLRRITEVVESKLKDTTHRLEEQLAKEQAARL 297

Query: 136 KGEEAAQLAQRKSNDEIRKLKENLKRAQREIEDQMHESNEYQIKRI 181
           + E +A+ AQ+KS++EIRKL+E L+RAQRE E+    S +  +  I
Sbjct: 298 EAELSAKEAQKKSDNEIRKLREYLERAQRETEELRGRSADRGVCNI 343

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500386|gb|AFK38259.1| unknown [Lotus japonicus]

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 105/211 (49%), Positives = 139/211 (65%), Gaps = 45/211 (21%)

Query: 1   SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILK 60
           +RFSQEE  A+  LQTLFG KI+DY +VVFTGGD+LE+ ++TLEDYLG +CP+PLK++L 
Sbjct: 114 TRFSQEEATALRSLQTLFGDKIYDYTVVVFTGGDELEEEDQTLEDYLGCDCPEPLKDLLS 173

Query: 61  LCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFAELK--------- 111
           LC++R +LFDNKTK + KR+EQVQQL S VN V  +NGG+PYT++ FAELK         
Sbjct: 174 LCENRRLLFDNKTKDERKRSEQVQQLFSFVNMVLSQNGGRPYTDDLFAELKKGALKLHNQ 233

Query: 112 ------------------------------------VESKLKETTTKLEQQLAEEQAARL 135
                                               VESKL++ T +LEQQLA+EQAARL
Sbjct: 234 QSQVNSLEGHSNKEILEYKKQAKQAYDDQLKRIAEMVESKLRDATLRLEQQLAKEQAARL 293

Query: 136 KGEEAAQLAQRKSNDEIRKLKENLKRAQREI 166
           K EE A LA+ +S+ EIR+L+++L+RA  E+
Sbjct: 294 KAEENANLARVRSDKEIRELRKHLERAHEEL 324

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511317|gb|AFK43720.1| unknown [Lotus japonicus]

 Score =  196 bits (498), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 104/211 (49%), Positives = 138/211 (65%), Gaps = 45/211 (21%)

Query: 1   SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILK 60
           +RFSQEE  A+  LQTLFG KI+DY +VVFTGGD+LE+ ++ LEDYLG +CP+PLK++L 
Sbjct: 114 TRFSQEEATALRSLQTLFGDKIYDYTVVVFTGGDELEEEDQALEDYLGCDCPEPLKDLLS 173

Query: 61  LCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFAELK--------- 111
           LC++R +LFDNKTK + KR+EQVQQL S VN V  +NGG+PYT++ FAELK         
Sbjct: 174 LCENRRLLFDNKTKDERKRSEQVQQLFSFVNMVLSQNGGRPYTDDLFAELKKGALKLHNQ 233

Query: 112 ------------------------------------VESKLKETTTKLEQQLAEEQAARL 135
                                               VESKL++ T +LEQQLA+EQAARL
Sbjct: 234 QSQVNSLEGHSNKEILEYKKQAKQAYDDQLKRIAEMVESKLRDATLRLEQQLAKEQAARL 293

Query: 136 KGEEAAQLAQRKSNDEIRKLKENLKRAQREI 166
           K EE A LA+ +S+ EIR+L+++L+RA  E+
Sbjct: 294 KAEENANLARVRSDKEIRELRKHLERAHEEL 324

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
TAIR|locus:2009041	342	AT1G33970 [Arabidopsis thalian	0.728	0.587	0.412	5.1e-35
TAIR|locus:2203807	353	AIG1 "AVRRPT2-INDUCED GENE 1"	0.742	0.580	0.400	1.1e-32
TAIR|locus:2203817	311	AT1G33950 [Arabidopsis thalian	0.637	0.565	0.394	3.8e-30
TAIR|locus:2203827	252	AT1G33870 [Arabidopsis thalian	0.615	0.674	0.429	1e-29
TAIR|locus:2039528	463	PP2-A3 "phloem protein 2-A3" [	0.594	0.354	0.424	1e-29
TAIR|locus:2203802	334	AT1G33890 [Arabidopsis thalian	0.724	0.598	0.372	1.3e-29
TAIR|locus:2203797	326	AT1G33900 [Arabidopsis thalian	0.648	0.549	0.378	2.8e-27
TAIR|locus:2203832	336	AT1G33930 [Arabidopsis thalian	0.724	0.595	0.380	3.5e-27
TAIR|locus:2203792	301	AT1G33910 [Arabidopsis thalian	0.644	0.591	0.405	2.5e-26
TAIR|locus:2140558	394	AT4G09940 [Arabidopsis thalian	0.844	0.591	0.325	1.8e-25

TAIR|locus:2009041 AT1G33970 [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 89/216 (41%), Positives = 133/216 (61%)

Query:     2 RFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILKL 61
             R ++EE+  +  LQ LFG KI DYMIVVFTGGD+LE+NE+TLE+YL   CP+ LKEIL +
Sbjct:   120 RLAEEEQTVLSFLQALFGSKIADYMIVVFTGGDELEENEETLEEYLADYCPEFLKEILGI 179

Query:    62 CDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFAELKVES-KLKETT 120
             CD+R VLF+NKT  KVK+ EQVQ+LLSLV +V  +N G+PY++E F EL+ E+ KL++  
Sbjct:   180 CDNRLVLFNNKTTDKVKKAEQVQKLLSLVESVVKQNNGKPYSDELFHELQEEAIKLRDQK 239

Query:   121 TKLE--QQLAEEQAARLKGE----------EAAQLAQRKSNDEIRKLKENLKRAQREIED 168
              ++E  Q  +  +    K +             ++ + K  D  ++L++ L   Q    +
Sbjct:   240 KEVELLQGYSNNEIDEFKKQIDMSYDRQLSRITEMVETKLRDTAKRLEQQLGEEQAARLE 299

Query:   169 QMHESNEYQIKRITEMVESNLKETTTRLEQQLAEEQ 204
                 +NE Q KR ++ ++  L+E   R E++  E Q
Sbjct:   300 AEKRANEVQ-KRSSDEIKK-LRENLERAEKETKELQ 333

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203807 AIG1 "AVRRPT2-INDUCED GENE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 85/212 (40%), Positives = 127/212 (59%)

Query:     1 SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILK 60
             +R SQEEE  +  LQ LFG KI DY+IVVFTGGD LED+  TLEDYLG   P  LK +L 
Sbjct:   138 TRISQEEEMVLSTLQVLFGSKIVDYLIVVFTGGDVLEDDGMTLEDYLGDNMPDFLKRVLI 197

Query:    61 LCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFAELKVESKL-KET 119
             LC  R +LFDNKTK   K+T+QV +LL L++ V  +N   PYT+E +  +K E++  K+ 
Sbjct:   198 LCGQRMILFDNKTKDDEKKTKQVHELLKLIDLVRKQNNNIPYTDEMYHMIKEENERHKKE 257

Query:   120 TTKLEQQ-LAEEQAARLKGEEAAQLAQRKSNDEIRKLKENLK---RAQREIEDQMHESNE 175
               +LE +  +EEQ A L  +E   + +R        +++N+K    AQ ++ +Q  ++ E
Sbjct:   258 QEELESKGHSEEQLAALM-KELQIMNERNLKAMAEMMEKNMKIAMEAQEKLFEQREKAQE 316

Query:   176 YQIKRITEMVESNLKETTTRLEQQLAEEQVAR 207
                ++  EM E  LK+   R+  ++  + ++R
Sbjct:   317 MSYQQKMEMQEK-LKQMEGRMRAEMEAQMLSR 347

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=IEP;ISS

GO:0006897 "endocytosis" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2203817 AT1G33950 [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 75/190 (39%), Positives = 120/190 (63%)

Query:     1 SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILK 60
             +R +QEEE  +  LQ LFG +I DY++VVFTGGD LE+ ++TLEDYLG +CP  +KE+++
Sbjct:   112 TRITQEEENTLRTLQALFGSQILDYVVVVFTGGDVLEECKETLEDYLGRDCPTFIKEVMR 171

Query:    61 LCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFAELKVES-KLKET 119
             +  +R V+ DNKT  + K+ EQV +LLSLV+ +     G+ YT++ +  +K ES KL++ 
Sbjct:   172 MSSNRKVVIDNKTHDEGKKAEQVHKLLSLVDDIRRSKCGEAYTDDTYHMIKEESEKLRKH 231

Query:   120 TTKLEQQ-LAEEQAARLKGEEAAQLAQRKSNDEIRKLKENLKRAQREIEDQMHESNEYQI 178
               +LE +  +EE AA +K            N  +   KENLK+   ++E ++ ++ E Q 
Sbjct:   232 HEELESKNYSEECAAEMK------------NQSLILYKENLKQMSEQLEKKLKDAAEAQE 279

Query:   179 KRITEMVESN 188
             K +++M + N
Sbjct:   280 KALSKMTQEN 289

GO:0005525 "GTP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2203827 AT1G33870 [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 76/177 (42%), Positives = 110/177 (62%)

Query:     1 SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILK 60
             +R +QEEE+ +  LQ +F  KI DY IVVFTGGD LE NE+TL+DY    CPK L  +L+
Sbjct:    72 NRITQEEESTLDTLQLIFDSKILDYFIVVFTGGDKLEANEQTLDDYFSEGCPKFLTGVLR 131

Query:    61 LCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFAELKVES-KLKET 119
             LC  R V+F+N TK KVK  +QV+QLL+ V A+   NGG+PYTN+    +K +  KL+E 
Sbjct:   132 LCGGRKVVFNNMTKDKVKNAKQVKQLLAHVEAIEKNNGGKPYTNQMHRMIKEKGDKLREQ 191

Query:   120 TTKLE-QQLAEEQAARLKGEEAAQLAQRKSNDEI--RKLKENLK---RAQREIEDQM 170
               K++ ++LA E     +  E     + +   ++  R+LK+N +   RA RE+ + M
Sbjct:   192 QRKVKSKKLASEIEVMKQDLELEHDEKMRRMTQLLERRLKQNSEAHERAMREMREAM 248

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0045036 "protein targeting to chloroplast" evidence=RCA

TAIR|locus:2039528 PP2-A3 "phloem protein 2-A3" [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 73/172 (42%), Positives = 110/172 (63%)

Query:     2 RFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILKL 61
             R S+EEE+ V+ LQ +FG +I DY IVVFTGGDDLE++++TL+DY    CP+ L ++L+L
Sbjct:   102 RISKEEESTVNTLQCIFGSQILDYCIVVFTGGDDLEEDDQTLDDYFRAGCPEFLTKVLRL 161

Query:    62 CDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFAELKVES--KLKE- 118
             C  R VLFDNK+K + K+ EQV+QLL+ V  V  + GG PYT +   ++K E+  +L+E 
Sbjct:   162 CGGRKVLFDNKSKDEKKKVEQVKQLLARVENVGEQTGGIPYTYQLHRKIKEENDERLREE 221

Query:   119 -----TTTKLEQQLAEEQAARLKGEEAAQLAQRKSNDEIRKLKENLKRAQRE 165
                  +  + E +LAE Q   L  +E  Q+ + K+   I + + N K  ++E
Sbjct:   222 ERVIESKNRAEAELAEMQQNLLMEKEKLQMEEAKNKQLIAQAEANEKLMEQE 273

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0006826 "iron ion transport" evidence=RCA

GO:0006897 "endocytosis" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2203802 AT1G33890 [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 76/204 (37%), Positives = 119/204 (58%)

Query:     1 SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILK 60
             +R +QEEE  +  LQ LFG +I DY+IV+FTGGD+LE N +TL+DY    CP  LK +L 
Sbjct:   109 TRITQEEENTLSTLQVLFGNEILDYLIVLFTGGDELEANNQTLDDYFHQGCPYFLKTVLG 168

Query:    61 LCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFAELKVESK-LKET 119
             LCD R V+F+N TK K K+ EQVQQ L+LV  V  +N G+P+  + + E+K E++ LK+ 
Sbjct:   169 LCDDRKVMFNNMTKDKHKKVEQVQQFLALVAKVEERNEGKPFRGKMYLEIKEETEWLKKQ 228

Query:   120 TTKLE-QQLAEEQAARLKGEEAAQLAQRKSN--DEIRKLKENLKRAQREIEDQMHESNEY 176
                +E   L E + A++K E   +   R S   D ++ + +    A   +   ++E+ E 
Sbjct:   229 KKAVEASNLGEAELAKMKKELQMEHDTRMSQMEDMVKNMLKETSAAHERMVSMLNENLEN 288

Query:   177 QIKRITEMVESNLKETTTRLEQQL 200
               +   ++ +++  E   R+  QL
Sbjct:   289 AHRENIDLRKAHDHEQKKRMMIQL 312

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203797 AT1G33900 [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 72/190 (37%), Positives = 112/190 (58%)

Query:     1 SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILK 60
             +R SQEEEA ++ LQ +FG +I DY++V+FTGGD+LE N  TL+DYL   CP+ LK +L+
Sbjct:   115 TRISQEEEATLNTLQVIFGSQIIDYLVVLFTGGDELEANNMTLDDYLSKGCPEFLKTVLR 174

Query:    61 LCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFAELKVESKLKETT 120
             LC  R +LFDN+T  + K+ +QVQ+LL+ V A+     G P+T+E   +++     KE  
Sbjct:   175 LCGGRRILFDNRTTDEGKKVKQVQELLAHVAAIEKSTSGIPFTDEMHRKIQ-----KEAE 229

Query:   121 TKLEQQLAEEQAARLKGEEAAQLAQRKSNDEIRKLKENLKRAQREIEDQMHESNEYQIKR 180
             T  EQQ   E     K   AA++ + K + +    K N+      + +++ E +E Q K 
Sbjct:   230 TLREQQKEVES----KDLAAAEIEKWKKHYQTEHDK-NMNMMAEMLGNRLREDSERQEKM 284

Query:   181 ITEMVESNLK 190
             +  +   NL+
Sbjct:   285 LLAL-RDNLE 293

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203832 AT1G33930 [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 81/213 (38%), Positives = 124/213 (58%)

Query:     1 SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILK 60
             +R SQEEE A+  LQ LFG KI DY+IVVFT GD LED   TLEDYL   CP+ LK +L+
Sbjct:   131 TRISQEEENALCTLQMLFGGKIVDYLIVVFTCGDMLEDRNMTLEDYLSNGCPEFLKNVLR 190

Query:    61 LCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFAELKVES-KLKET 119
             LC  R V+FDN+TK +  + +QVQQLL  V A+  + GG P+T+     ++ E+ ++K  
Sbjct:   191 LCGGRRVVFDNRTKDEGVKAKQVQQLLVHVAAIEKETGGNPFTDTMHRRIQEEAARVKRE 250

Query:   120 TTKLEQQ-LAEEQAARLKGEEAAQLAQRKSNDEIRKLKENLKRAQREIEDQMHESNEYQI 178
               ++E++ +A+E+ A LK +     +Q   N  +  L   ++R  +E       +NE Q+
Sbjct:   251 EKEIEEKNIADEEKAALKKQLDMSYSQ---NMNMMALM--MERIFKETA----AANERQM 301

Query:   179 KRITEMVESNLKETTTRLEQQLAEEQVARLKGE 211
               + + +E ++       ++  AEE+ A  K E
Sbjct:   302 NMMKDFMEISIIGNDAHRKR--AEEKQAEKKQE 332

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2203792 AT1G33910 [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 77/190 (40%), Positives = 110/190 (57%)

Query:     5 QEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILKLCDH 64
             +EEEAA++ LQ LFG KI DY++V+FTGGD LE   KTL+DYL   CP+ LK +L+LC  
Sbjct:   107 KEEEAALNKLQLLFGSKIVDYLVVLFTGGDVLEKENKTLDDYLSRGCPEFLKTVLRLCGG 166

Query:    65 RCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFAELKVESKLKETTTKLE 124
             R VLF+NKT  +VK+ EQV+QLL+ V A+   NGG+      F E   E+ L E     E
Sbjct:   167 RRVLFNNKTTDEVKKIEQVKQLLAHVEAIENLNGGKA----LFTE---ENDLNEKRQG-E 218

Query:   125 QQLAEEQAARLKGEEAAQLAQRKSNDEIRKLKENLKRAQREIEDQMHESN---EYQIKRI 181
               + +E   + K  E  ++ + K   EI   ++    AQ  +ED + ES+   E  +  +
Sbjct:   219 MLMEQEMEVQSKKPENTEVEEMKKQLEISYGQQMNMMAQM-VEDTLKESSASHERMLLAL 277

Query:   182 TEMVESNLKE 191
              + VE +  E
Sbjct:   278 KDKVERSYLE 287

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2140558 AT4G09940 [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 81/249 (32%), Positives = 134/249 (53%)

Query:     1 SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILK 60
             +R ++EE++A+  L+ LFG KI DYMIVVFT  D LED+  T E+YL  E     KEIL+
Sbjct:   143 NRLTEEEKSALFALKILFGSKIVDYMIVVFTNEDSLEDDGDTFEEYL--EDSPDFKEILE 200

Query:    61 LCDHRCVLFDNKTKYKV-KRTEQVQQLLSLVNAVNVKNGGQPYTNEFFAELKVESKLKET 119
              C+ R VLF N++   V ++ +QVQ+LL+ V  +   NG       + A+L  E +  ET
Sbjct:   201 PCNDRKVLFRNRSNAPVSQKAKQVQELLNYVEEIARLNG-----KSYMADLSHEIRENET 255

Query:   120 TTKLEQQLAEEQAARLKGEEAAQLAQ--RKS--NDEIRKLKENLKRAQREIEDQMHESNE 175
               +++QQ   E       +E  Q+ +   KS  N ++R++ E ++   RE ++++ +  +
Sbjct:   256 AFQIKQQEILEMKGLYTRQEMLQMKKDMEKSFENQQLRQMMERVETELRETKERLEQQLK 315

Query:   176 YQIKRITEMVESNLKETTTR---LEQQLAEEQVARLKGEEVAQVAQRKSNDKIHKLRDNL 232
              +     E+ E   KE   R   + ++L +EQ  RL+ E  A+ A ++SN  +  L   L
Sbjct:   316 EEKSARLEL-EKRAKEVEKRSSDVVKELNDEQAKRLESESRAKEAVKQSNGVVENLNKEL 374

Query:   233 ESAQRETED 241
                ++   D
Sbjct:   375 ARIKQMATD 383

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006897 "endocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00021940001 SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (340 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	276
pfam04548	211	pfam04548, AIG1, AIG1 family	3e-40
cd01852	201	cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1)	1e-35
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	0.003

>gnl|CDD|218141 pfam04548, AIG1, AIG1 family

 Score =  138 bits (350), Expect = 3e-40
 Identities = 62/112 (55%), Positives = 81/112 (72%), Gaps = 3/112 (2%)

Query: 2   RFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILKL 61
           RF++EEE A+  LQ LFG KI DYMIVVFT  DDLED+   L+DYL   CP+ LKE+L+ 
Sbjct: 95  RFTEEEEQALRTLQELFGSKILDYMIVVFTRKDDLEDDS--LDDYLSDGCPEFLKEVLRE 152

Query: 62  CDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFAELKVE 113
           C  R VLF+NK     ++ EQVQQLL+LV A+  +NGG+PYTN+ + ++K E
Sbjct: 153 CGGRYVLFNNKAD-GEEKEEQVQQLLALVEAIVKENGGKPYTNDLYEKIKEE 203

Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria. Length = 211

>gnl|CDD|206651 cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1)

 Score =  126 bits (318), Expect = 1e-35
 Identities = 52/110 (47%), Positives = 75/110 (68%), Gaps = 4/110 (3%)

Query: 2   RFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILKL 61
           RF++EEE AV  LQ LFG+K+ D+ IV+FT GDDLE    +LEDYL  +  + LK +L+ 
Sbjct: 95  RFTEEEEQAVEELQELFGEKVLDHTIVLFTRGDDLEGG--SLEDYLE-DSCEALKRLLEK 151

Query: 62  CDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFAELK 111
           C  R V F+NK K   ++ +QV++LL+ V  +  +NGG+PYTNE + E +
Sbjct: 152 CGGRYVAFNNKAK-GREQEQQVKELLAKVEEMVRENGGKPYTNEMYEEAE 200

This group represents Arabidoposis protein AIG1 (avrRpt2-induced gene 1) that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). Length = 201

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 38.2 bits (90), Expect = 0.003
 Identities = 26/137 (18%), Positives = 66/137 (48%), Gaps = 5/137 (3%)

Query: 106 FFAELKVESKLKETTTKLEQQLAEEQAARLKGEEAAQLAQRKSNDEIRKLKENLKRAQRE 165
           F  +   E+K+KE   + ++ L E   A+ + E   + A  ++ +EI KL+   ++  RE
Sbjct: 23  FVRKKIAEAKIKEAEEEAKRILEE---AKKEAEAIKKEALLEAKEEIHKLRNEFEKELRE 79

Query: 166 IEDQMHESNEYQIKRITEMVESNLKETTTRLEQQLAEEQVARLKGEEVAQVAQRKSNDKI 225
             +++ +  E ++ +  E ++  L E   + E++L +++    + ++  +  + +  + I
Sbjct: 80  RRNEL-QKLEKRLLQKEENLDRKL-ELLEKREEELEKKEKELEQKQQELEKKEEELEELI 137

Query: 226 HKLRDNLESAQRETEDQ 242
            +    LE     T ++
Sbjct: 138 EEQLQELERISGLTAEE 154

Length = 520

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	276
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.95
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.91
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.09
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	98.88
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	96.55
PF03904	230	DUF334: Domain of unknown function (DUF334); Inter	85.47
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	80.63

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.95  E-value=3.4e-28  Score=214.37  Aligned_cols=111  Identities=42%  Similarity=0.697  Sum_probs=97.8

Q ss_pred             CCCcHHHHHHHHHHHHHhchhhcceeEEEEecCCCCCCchhcHHHHhccCCCchHHHHHHHcCCceEEEecCCcCcccch
Q 048606            1 SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILKLCDHRCVLFDNKTKYKVKRT   80 (276)
Q Consensus         1 gRFTeEE~~ale~Iq~lFG~~a~kytIVLFT~gDeLe~~~~tlEdyL~~~~~~~LqeLIekCGgRyhvFNNK~~~~~~q~   80 (276)
                      +|||.+|+.+++.|..+||+++|+|+|||||++|.+.+  .++++||.+.+|..|++|+++||||||+|||++.+..+..
T Consensus        94 ~r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~--~~~~~~l~~~~~~~l~~li~~c~~R~~~f~n~~~~~~~~~  171 (212)
T PF04548_consen   94 GRFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED--DSLEDYLKKESNEALQELIEKCGGRYHVFNNKTKDKEKDE  171 (212)
T ss_dssp             TB-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT--TTHHHHHHHHHHHHHHHHHHHTTTCEEECCTTHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc--ccHHHHHhccCchhHhHHhhhcCCEEEEEeccccchhhhH
Confidence            58999999999999999999999999999999999998  6799999854577899999999999999999954443457


Q ss_pred             hHHHHHHHHHHHHHHHcCCCCCChHHHHHHHhh
Q 048606           81 EQVQQLLSLVNAVNVKNGGQPYTNEFFAELKVE  113 (276)
Q Consensus        81 ~QV~ELL~kIe~mV~eNgG~~YTnemf~eae~e  113 (276)
                      .||.+||++|+.||..|||.|||+++|+++++.
T Consensus       172 ~qv~~Ll~~ie~mv~~n~g~~~~~~~~~~~~~~  204 (212)
T PF04548_consen  172 SQVSELLEKIEEMVQENGGQYYSNEMFEEAEER  204 (212)
T ss_dssp             HHHHHHHHHHHHHHHHTTTT--B-HHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHH
Confidence            999999999999999999999999999999955

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.91  E-value=4.5e-24  Score=184.11  Aligned_cols=103  Identities=50%  Similarity=0.823  Sum_probs=96.1

Q ss_pred             CCCcHHHHHHHHHHHHHhchhhcceeEEEEecCCCCCCchhcHHHHhccCCCchHHHHHHHcCCceEEEecCCcCcccch
Q 048606            1 SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILKLCDHRCVLFDNKTKYKVKRT   80 (276)
Q Consensus         1 gRFTeEE~~ale~Iq~lFG~~a~kytIVLFT~gDeLe~~~~tlEdyL~~~~~~~LqeLIekCGgRyhvFNNK~~~~~~q~   80 (276)
                      ++||++|..+++.|+++||+.+++|+|||||++|+|.+  .++++|+. .++..|+.|+++||+|||+|||+.+ .....
T Consensus        94 ~~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~--~~~~~~~~-~~~~~l~~l~~~c~~r~~~f~~~~~-~~~~~  169 (196)
T cd01852          94 GRFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG--GTLEDYLE-NSCEALKRLLEKCGGRYVAFNNKAK-GEEQE  169 (196)
T ss_pred             CCcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCC--CcHHHHHH-hccHHHHHHHHHhCCeEEEEeCCCC-cchhH
Confidence            36899999999999999999999999999999999988  79999999 4678999999999999999999986 44668


Q ss_pred             hHHHHHHHHHHHHHHHcCCCCCChHHH
Q 048606           81 EQVQQLLSLVNAVNVKNGGQPYTNEFF  107 (276)
Q Consensus        81 ~QV~ELL~kIe~mV~eNgG~~YTnemf  107 (276)
                      .||.+||++|+.|+.+|||.|||+.||
T Consensus       170 ~q~~~Ll~~i~~~~~~~~~~~~~~~~~  196 (196)
T cd01852         170 QQVKELLAKVESMVKENGGKPYTNDMY  196 (196)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence            999999999999999999999999886

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.09  E-value=1.2e-10  Score=119.81  Aligned_cols=65  Identities=9%  Similarity=0.183  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHhchhhcceeEEEEecCCCCCCc-----hhcHHHHhccCCCchHHHHHHHcCCceEEEe
Q 048606            5 QEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDN-----EKTLEDYLGLECPKPLKEILKLCDHRCVLFD   70 (276)
Q Consensus         5 eEE~~ale~Iq~lFG~~a~kytIVLFT~gDeLe~~-----~~tlEdyL~~~~~~~LqeLIekCGgRyhvFN   70 (276)
                      .++..+++.|+.+||+++|+||||||||+|.+..+     +.|+++||. .++..||.+|..|+||+++||
T Consensus       218 ~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~-~rs~~Lq~~Irq~~g~~~l~n  287 (763)
T TIGR00993       218 SNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVA-QRSHIVQQAIGQAVGDLRLMN  287 (763)
T ss_pred             HHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHh-hChHHHHHHHHHhcCcceecc
Confidence            37889999999999999999999999999999632     368999998 589999999999999999999

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=98.88  E-value=1e-08  Score=97.51  Aligned_cols=95  Identities=17%  Similarity=0.254  Sum_probs=75.2

Q ss_pred             CCCcHHHHHHHHHHHHHhchhhcceeEEEEecCCCCCCchhcHHHHhccCCCchHHHHHHHcCC-----------ceEEE
Q 048606            1 SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILKLCDH-----------RCVLF   69 (276)
Q Consensus         1 gRFTeEE~~ale~Iq~lFG~~a~kytIVLFT~gDeLe~~~~tlEdyL~~~~~~~LqeLIekCGg-----------RyhvF   69 (276)
                      +|+|+.|..+++.|+..||+.+|+|+||||||+|.+..++.++++|+. .++..|+.+|+.|-+           -+++.
T Consensus       131 ~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~-~~~~~lq~~i~~~~~~~~~~~~~~~~pv~lv  209 (313)
T TIGR00991       131 YRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFS-KRSEALLRVIHSGAGLKKRDYQDFPIPVALV  209 (313)
T ss_pred             ccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHH-hcHHHHHHHHHHHhcccccccccccCCEEEE
Confidence            378999999999999999999999999999999988544589999999 489999999998764           22555


Q ss_pred             ecCC--c--Ccccc-----hhHHHHHHHHHHHHHHH
Q 048606           70 DNKT--K--YKVKR-----TEQVQQLLSLVNAVNVK   96 (276)
Q Consensus        70 NNK~--~--~~~~q-----~~QV~ELL~kIe~mV~e   96 (276)
                      .|..  .  ...++     ...+..||..|-.|+..
T Consensus       210 en~~~c~~n~~ge~vlp~g~~w~~~l~~~~~~~~~~  245 (313)
T TIGR00991       210 ENSGRCKKNESDEKILPDGTPWIPKLMKEITEVISN  245 (313)
T ss_pred             ecCCcccCCCCCCeECCCCCccHHHHHHHHHHHHhC
Confidence            6632  1  11111     46889999999888653

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=96.55  E-value=0.0021  Score=59.11  Aligned_cols=88  Identities=19%  Similarity=0.249  Sum_probs=59.3

Q ss_pred             CCcHHHHHHHHHHHHHhchhhcceeEEEEecCCCCCCchh-----cHHHHhccCCCchHHHHHHHcC----------Cce
Q 048606            2 RFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEK-----TLEDYLGLECPKPLKEILKLCD----------HRC   66 (276)
Q Consensus         2 RFTeEE~~ale~Iq~lFG~~a~kytIVLFT~gDeLe~~~~-----tlEdyL~~~~~~~LqeLIekCG----------gRy   66 (276)
                      |++..|..+++.|...||..+|+|+||||||.|.+..++.     +.+.|..     .++.++..|.          ...
T Consensus       128 r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~pv  202 (249)
T cd01853         128 RRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDGLNGTPFSYDRFVA-----QRSHIVQQAIQQAAGDPRLENPV  202 (249)
T ss_pred             CCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCCCCCCcchHHHHHH-----HHHHHHHHHhhhhccCccccCCE
Confidence            6889999999999999999999999999999998754322     2333332     2444444442          356


Q ss_pred             EEEecCCc----Ccccc-----hhHHHHHHHHHHHHH
Q 048606           67 VLFDNKTK----YKVKR-----TEQVQQLLSLVNAVN   94 (276)
Q Consensus        67 hvFNNK~~----~~~~q-----~~QV~ELL~kIe~mV   94 (276)
                      ++.+|...    ...++     ...+..||..+-.|.
T Consensus       203 ~lven~~~c~~n~~~~~vlp~g~~w~~~~~~~~~~~~  239 (249)
T cd01853         203 SLVENHPRCRKNREGEKVLPNGTVWKPQLLLLCYSVK  239 (249)
T ss_pred             EEEeCCCcccCCCCCCeECCCCCccHHHHHHHHHHHH
Confidence            77777532    11111     357778887776664

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function

Probab=85.47  E-value=32  Score=32.17  Aligned_cols=75  Identities=23%  Similarity=0.453  Sum_probs=45.4

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhcHH
Q 048606          172 ESNEYQIKRITEMVESNLKETTTRLEQQ----------LAEEQVARLKGEEVAQVAQRKSNDKIHKLRDNLESAQRETED  241 (276)
Q Consensus       172 ~~~~~~~~~~~~~~e~~l~~~~~~le~~----------l~~eq~arl~~e~~~~~~~~~s~~~i~~l~~~le~a~~~~~~  241 (276)
                      ..++.+++.|+.    +|.+|+...-..          ...+.-.+.+.+.....    +..+|.++++.+++.-++...
T Consensus        67 d~reK~~~~I~s----sL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~tde~k~~----~~~ei~k~r~e~~~ml~evK~  138 (230)
T PF03904_consen   67 DIREKNLKEIKS----SLEETTKDFIDKTEKVHNDFQDILQDELKDVDTDELKNI----AQNEIKKVREENKSMLQEVKQ  138 (230)
T ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            345566666665    455554444211          12233445555544444    445699999999999999554


Q ss_pred             HhhhhhHHhhhhhh
Q 048606          242 QMHESYEDQIKRIT  255 (276)
Q Consensus       242 ~~~~~~~~~~~~~~  255 (276)
                       -|+.|..-.+.++
T Consensus       139 -~~E~y~k~~k~~~  151 (230)
T PF03904_consen  139 -SHEKYQKRQKSMY  151 (230)
T ss_pred             -HHHHHHHHHHHHH
Confidence             6777877777774

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=80.63  E-value=29  Score=37.08  Aligned_cols=62  Identities=32%  Similarity=0.439  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHH---HHHHHHHHHHHHHhhhhHHHHHHH------------------HhhcHHHHHHHHHHHHHHHhhcHH
Q 048606          183 EMVESNLKETT---TRLEQQLAEEQVARLKGEEVAQVA------------------QRKSNDKIHKLRDNLESAQRETED  241 (276)
Q Consensus       183 ~~~e~~l~~~~---~~le~~l~~eq~arl~~e~~~~~~------------------~~~s~~~i~~l~~~le~a~~~~~~  241 (276)
                      ..||.+|++-.   ..+|+||.+|+.+|.++|..|..+                  ...-+.|+.+||.+|-..+.....
T Consensus       491 ~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~  570 (697)
T PF09726_consen  491 QQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRE  570 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677666543   557999999999999887776643                  334567788888877765555444


Q ss_pred             Hhh
Q 048606          242 QMH  244 (276)
Q Consensus       242 ~~~  244 (276)
                      +-.
T Consensus       571 ~e~  573 (697)
T PF09726_consen  571 LES  573 (697)
T ss_pred             HHH
Confidence            433

; GO: 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	276
3v70_A	247	Crystal Structure Of Human Gtpase Imap Family Membe		2e-10
2xto_A	240	Crystal Structure Of Gdp-Bound Human Gimap2, Amino		6e-06
3p1j_A	209	Crystal Structure Of Human Gtpase Imap Family Membe		7e-06
2xtm_A	234	Crystal Structure Of Gdp-Bound Human Gimap2, Amino		7e-06
2xtp_A	260	Crystal Structure Of Nucleotide-Free Human Gimap2,		7e-05
3lxx_A	239	Crystal Structure Of Human Gtpase Imap Family Membe		7e-05

>pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1 Length = 247

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 77/136 (56%), Gaps = 5/136 (3%)
Query: 1   SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILK 60
            RF+ +++ AV  ++ +FG+ +  +M++VFT  +DL     +L DY+     + L+E++ 
Sbjct: 116 GRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGG--SLHDYVSNTENRALRELVA 173
Query: 61  LCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFAELKVESKLKETT 120
            C  R   FDN+   + ++  QV QLL +V  + +++ G  Y+NE + EL    +     
Sbjct: 174 ECGGRVCAFDNRATGR-EQEAQVVQLLGMVEGLVLEHKGAHYSNEVY-ELAQVLRWAGPE 231
Query: 121 TKLEQQLAEEQAARLK 136
            +L +++AE  AAR++
Sbjct: 232 ERL-RRVAERVAARVQ 246

>pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid Residues 21-260 Length = 240

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 1   SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILK 60
            R++ +++ A   ++ +FG+    + IV+FT  +DL  N  +L DY+     K L +++ 
Sbjct: 96  GRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDL--NGGSLMDYMHDSDNKALSKLVA 153
Query: 61  LCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFA 108
            C  R   F+N+ +    + +QV++L+  +  + ++  G  YTN  ++
Sbjct: 154 ACGGRICAFNNRAE-GSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYS 200

>pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In The Nucleotide-Free State Length = 209

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 1   SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILK 60
            R++ +++ A   ++ +FG+    + IV+FT  +DL  N  +L DY+     K L +++ 
Sbjct: 99  GRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDL--NGGSLMDYMHDSDNKALSKLVA 156
Query: 61  LCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFA 108
            C  R   F+N+ +    + +QV++L+  +  + ++  G  YTN  ++
Sbjct: 157 ACGGRICAFNNRAE-GSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYS 203

>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid Residues 1-234 Length = 234

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 1   SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILK 60
            R++ +++ A   ++ +FG+    + IV+FT  +DL  N  +L DY+     K L +++ 
Sbjct: 116 GRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDL--NGGSLMDYMHDSDNKALSKLVA 173
Query: 61  LCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFA 108
            C  R   F+N+ +    + +QV++L+  +  + ++  G  YTN  ++
Sbjct: 174 ACGGRICAFNNRAE-GSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYS 220

>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino Acid Residues 1-260 Length = 260

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 1   SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILK 60
            R++ +++ A   ++ +FG+    + IV+FT  +DL  N  +L DY      K L +++ 
Sbjct: 116 GRYTSQDQQAAQRVKEIFGEDAXGHTIVLFTHKEDL--NGGSLXDYXHDSDNKALSKLVA 173
Query: 61  LCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFA 108
            C  R   F+N+ +    + +QV++L   +  +  +  G  YTN  ++
Sbjct: 174 ACGGRICAFNNRAE-GSNQDDQVKELXDCIEDLLXEKNGDHYTNGLYS 220

>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4 Length = 239

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 1   SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILK 60
            R+++EE  A   +   FG++   + I++FT  DDL D    L DYL  E P+ ++++  
Sbjct: 123 GRYTEEEHKATEKILKXFGERARSFXILIFTRKDDLGDT--NLHDYL-REAPEDIQDLXD 179
Query: 61  LCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFF 107
           +   R    +NK     ++  Q  QLL L+  V  +N    YTN  +
Sbjct: 180 IFGDRYCALNNKAT-GAEQEAQRAQLLGLIQRVVRENKEGCYTNRXY 225

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	276
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	3e-25
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	4e-25
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	3e-23
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	2e-17
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	2e-13
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-04
3ghg_C	411	Fibrinogen gamma chain; triple-stranded coiled coi	6e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	9e-06
3ghg_B	461	Fibrinogen beta chain; triple-stranded coiled coil	9e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A Length = 260

 Score = 99.7 bits (248), Expect = 3e-25
 Identities = 30/148 (20%), Positives = 72/148 (48%), Gaps = 4/148 (2%)

Query: 2   RFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILKL 61
           R++ +++ A   ++ +FG+    + IV+FT  +DL     +L DY+     K L +++  
Sbjct: 117 RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG--GSLMDYMHDSDNKALSKLVAA 174

Query: 62  CDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFAELKVESKLKETTT 121
           C  R   F+N+ +   +  +QV++L+  +  + ++  G  YTN  ++ ++  SK     +
Sbjct: 175 CGGRICAFNNRAEGSNQD-DQVKELMDCIEDLLMEKNGDHYTNGLYSLIQ-RSKCGPVGS 232

Query: 122 KLEQQLAEEQAARLKGEEAAQLAQRKSN 149
               +  ++   +    + +  A  ++N
Sbjct: 233 DERVKEFKQSLIKYMETQRSYTALAEAN 260

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Length = 239

 Score = 93.9 bits (233), Expect = 3e-23
 Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 6/122 (4%)

Query: 2   RFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILKL 61
           R+++EE  A   +  +FG++   +MI++FT  DDL D    L DYL  E P+ +++++ +
Sbjct: 124 RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGD--TNLHDYLR-EAPEDIQDLMDI 180

Query: 62  CDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFAELKVESKLKETTT 121
              R    +NK     +   Q  QLL L+  V  +N    YTN  +     E ++++ T 
Sbjct: 181 FGDRYCALNNKATGAEQEA-QRAQLLGLIQRVVRENKEGCYTNRMYQR--AEEEIQKQTQ 237

Query: 122 KL 123
            +
Sbjct: 238 AM 239

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score = 79.1 bits (195), Expect = 2e-17
 Identities = 17/123 (13%), Positives = 35/123 (28%), Gaps = 19/123 (15%)

Query: 2   RFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILKL 61
              + ++  V  +   FGK+I+   ++V T       +E + E +        LK I   
Sbjct: 130 AVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTIRAG 189

Query: 62  CDHRCVLFDNKTKYKV-------------------KRTEQVQQLLSLVNAVNVKNGGQPY 102
              R   F++     V                        +  L+  +  V        +
Sbjct: 190 SKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIPNLVKAITDVATNQRKAIH 249

Query: 103 TNE 105
            + 
Sbjct: 250 VDA 252

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score = 67.7 bits (165), Expect = 2e-13
 Identities = 13/105 (12%), Positives = 33/105 (31%), Gaps = 17/105 (16%)

Query: 1   SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILK 60
            R    ++     +   FGK I++  IV  T       +    +++   +  + L ++++
Sbjct: 132 YRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFS-KRSEALLQVVR 190

Query: 61  LCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNE 105
                                        +  V ++N G+   N+
Sbjct: 191 SGASLKKDAQASD----------------IPVVLIENSGRCNKND 219

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 49.0 bits (117), Expect = 8e-07
 Identities = 22/159 (13%), Positives = 61/159 (38%), Gaps = 18/159 (11%)

Query: 107  FAELKVESKLKETTTKLEQQLAEEQAARLKGEEAAQLAQRKSNDEIRKLK---ENLKRAQ 163
                K+   L+    +L++++ E+        E     +   + E  KL+   E L+ ++
Sbjct: 917  ERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSE 976

Query: 164  REIEDQMHESNEYQ--IKRITEMVES------NLKETTTRLEQQLAEEQVARLKGEEVAQ 215
             E ++  +     Q  I ++ + +         ++E   + + +  E+ V+ LK +    
Sbjct: 977  EEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHET-EQLVSELKEQN--- 1032

Query: 216  VAQRKSNDKIHKLRDNLESAQRETEDQMHESYEDQIKRI 254
                    +  +L   +    +E  + M +   ++ K++
Sbjct: 1033 ---TLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQL 1068

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 22/134 (16%), Positives = 52/134 (38%), Gaps = 21/134 (15%)

Query: 113  ESKLKETTTKLEQQLAEEQAA----RLKGEEAAQLAQR--KSNDEIRKLKENLKRAQREI 166
              KL+    +L     E + A        EE A+L +   ++  E + ++E   + + E 
Sbjct: 962  TEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHET 1021

Query: 167  EDQMHESNEYQIKRITEMVESNLKETTTRLEQQLAEEQVARLKGEEVAQVAQRKSNDKIH 226
            E  + E  E           + LK     L +++ ++       +E+ +  ++K  ++  
Sbjct: 1022 EQLVSELKE---------QNTLLKTEKEELNRRIHDQA------KEITETMEKKLVEETK 1066

Query: 227  KLRDNLESAQRETE 240
            +L  +L   +   +
Sbjct: 1067 QLELDLNDERLRYQ 1080

>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C Length = 411

 Score = 46.0 bits (109), Expect = 6e-06
 Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 22/153 (14%)

Query: 50  ECPKPLKEILKLCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFAE 109
            C    +     C   C + D  + Y+ K  + +Q L  +++ V  K             
Sbjct: 7   NCCILDERFGSYCPTTCGIADFLSTYQTKVDKDLQSLEDILHQVENKT------------ 54

Query: 110 LKVESKLKETTTKLEQQLAEEQAARLKGEEAAQLAQRKSNDEIRKLKENLKRAQREIEDQ 169
               S++K+    ++     +++++    +AA L  RK  +EI K + ++      I   
Sbjct: 55  ----SEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRYL 110

Query: 170 MHESNEYQIKRITEMVESNLKETTTRLEQQLAE 202
               N    K        NLKE   +LE Q  E
Sbjct: 111 QEIYNSNNQKI------VNLKEKVAQLEAQCQE 137

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 46.0 bits (109), Expect = 9e-06
 Identities = 29/144 (20%), Positives = 69/144 (47%), Gaps = 15/144 (10%)

Query: 111  KVESKLKETTTKLEQQLAEEQAARLKGEEAAQLAQRKSND----------EIRKLKENLK 160
            K+++K +   ++LE +L +E+ +R + E+  +  + +S+D          +I +LK  L 
Sbjct: 1032 KLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLA 1091

Query: 161  RAQREIEDQMHESNEYQIKRITEMVE-SNLKETTTRLEQQLAEEQVARLKGEEVAQVAQR 219
            + + E++  +    +   ++   + +   L+   + L++ L  E+ AR K    A+  +R
Sbjct: 1092 KKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNK----AEKQKR 1147

Query: 220  KSNDKIHKLRDNLESAQRETEDQM 243
              ++++  L+  LE     T  Q 
Sbjct: 1148 DLSEELEALKTELEDTLDTTATQQ 1171

>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H* Length = 461

 Score = 42.3 bits (99), Expect = 9e-05
 Identities = 22/155 (14%), Positives = 58/155 (37%), Gaps = 28/155 (18%)

Query: 50  ECPKPLKEILKLCDHRCVLFDNKTKYKVKRTEQVQQLLSLVNAVNVKNGGQPYTNEFFAE 109
            C     ++  LC   C L +   + +      V +L + V AV+  +            
Sbjct: 64  GCLHADPDLGVLCPTGCQLQEALLQQERPIRNSVDELNNNVEAVSQTSSSS--------- 114

Query: 110 LKVESKLKETTTKLEQQLAEEQAARLKGEEAAQLAQRKSNDEIRKLKENLKRAQREIEDQ 169
            +    LK+   K ++Q+ + +                  + + +    L++ Q  I++ 
Sbjct: 115 FQYMYLLKDLWQKRQKQVKDNE------------------NVVNEYSSELEKHQLYIDET 156

Query: 170 MHESNEYQIKRITEMVESNLKETTTRLEQQLAEEQ 204
           ++ +    ++ +  ++E NL+    +LE  ++ + 
Sbjct: 157 VNSNIPTNLRVLRSILE-NLRSKIQKLESDVSAQM 190

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 3e-04
 Identities = 45/364 (12%), Positives = 99/364 (27%), Gaps = 103/364 (28%)

Query: 4   SQEEEAAVHHLQTLF---GKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILK 60
           S++  +    L        +++    +      + L  N K L   +  E  +P      
Sbjct: 57  SKDAVSGTLRLFWTLLSKQEEMVQKFV-----EEVLRINYKFLMSPIKTEQRQPSMMTRM 111

Query: 61  LCDHRCVLF-DNK--TKYKVKRTEQVQQL---L--------------------SLVNAVN 94
             + R  L+ DN+   KY V R +   +L   L                     +   V 
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV- 170

Query: 95  VKNGGQPYTNEF------FAELKVESKLKETTTKLEQQLAEEQAARLKGEEAAQLAQRKS 148
             +       +F               + E   KL  Q+     +R       +L     
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 149 NDEIRKL--KENLKRA---------------------------QREIEDQMHESNEYQIK 179
             E+R+L   +  +                              +++ D +  +    I 
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI- 289

Query: 180 RITEMVESNLKETTTRLEQQLA---EEQVARLKGEE-------VAQVAQRKSNDKIH--- 226
               +   ++  T   ++  L    + +   L  E        ++ +A+   +       
Sbjct: 290 ---SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346

Query: 227 -------KLRDNLE-SAQRETEDQMHESYED------QIKRITEVVFFMLLLLTSKYD-M 271
                  KL   +E S       +  + ++           I  ++  ++     K D M
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH-IPTILLSLIWFDVIKSDVM 405

Query: 272 HIVH 275
            +V+
Sbjct: 406 VVVN 409

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	276
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.76
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.62
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	98.91
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	97.08
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	96.88
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	82.36

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.62  E-value=6.3e-16  Score=133.88  Aligned_cols=109  Identities=31%  Similarity=0.571  Sum_probs=78.9

Q ss_pred             CCCcHHHHHHHHHHHHHhchhhcceeEEEEecCCCCCCchhcHHHHhccCCCchHHHHHHHcCCceEEEecCCcCcccch
Q 048606            1 SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILKLCDHRCVLFDNKTKYKVKRT   80 (276)
Q Consensus         1 gRFTeEE~~ale~Iq~lFG~~a~kytIVLFT~gDeLe~~~~tlEdyL~~~~~~~LqeLIekCGgRyhvFNNK~~~~~~q~   80 (276)
                      +++|..+...+..+...||..+..++|||||+.|.+.+  .++++|+. ..+..|+++++.||+|||+|+|++++. ...
T Consensus       123 ~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~i~-~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~~  198 (239)
T 3lxx_A          123 GRYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGD--TNLHDYLR-EAPEDIQDLMDIFGDRYCALNNKATGA-EQE  198 (239)
T ss_dssp             TCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC---------------CHHHHHHHHHHSSSEEECCTTCCHH-HHH
T ss_pred             CCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCc--ccHHHHHH-hchHHHHHHHHHcCCEEEEEECCCCcc-ccH
Confidence            46888999999999999999999999999999999887  78999998 367789999999999999999997543 346


Q ss_pred             hHHHHHHHHHHHHHHHcCCCCCChHHHHHHHhh
Q 048606           81 EQVQQLLSLVNAVNVKNGGQPYTNEFFAELKVE  113 (276)
Q Consensus        81 ~QV~ELL~kIe~mV~eNgG~~YTnemf~eae~e  113 (276)
                      .||.+||.+|+.|+..|||.||++.+|..+++.
T Consensus       199 ~~v~~ll~~i~~~~~~~~g~~~~~~~~~~~e~~  231 (239)
T 3lxx_A          199 AQRAQLLGLIQRVVRENKEGCYTNRMYQRAEEE  231 (239)
T ss_dssp             HHHHHHHHHHHHHHHHCTTSCC-----------
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Confidence            899999999999999999999999999999844

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=98.91  E-value=1.1e-08  Score=89.09  Aligned_cols=108  Identities=24%  Similarity=0.522  Sum_probs=89.9

Q ss_pred             CCcHHHHHHHHHHHHHhchhhcceeEEEEecCCCCCCchhcHHHHhccCCCchHHHHHHHcCCceEEEecCCcCcccchh
Q 048606            2 RFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILKLCDHRCVLFDNKTKYKVKRTE   81 (276)
Q Consensus         2 RFTeEE~~ale~Iq~lFG~~a~kytIVLFT~gDeLe~~~~tlEdyL~~~~~~~LqeLIekCGgRyhvFNNK~~~~~~q~~   81 (276)
                      +|+..+...+..+..+||..+....|||||++.|+.+  .++.+|+....+..++.++..|+.||+.|++-..+ +....
T Consensus       117 ~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~S-A~~~~  193 (260)
T 2xtp_A          117 RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG--GSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEG-SNQDD  193 (260)
T ss_dssp             CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT--CCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCH-HHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC--ccHHHHHHhcchHHHHHHHHHhCCeEEEecCcccc-cccHH
Confidence            5788889999999999999988999999998877875  57999997545567999999999999989883221 13357


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCChHHHHHHHh
Q 048606           82 QVQQLLSLVNAVNVKNGGQPYTNEFFAELKV  112 (276)
Q Consensus        82 QV~ELL~kIe~mV~eNgG~~YTnemf~eae~  112 (276)
                      +|.+|+..|..++..++|.+|++.++.....
T Consensus       194 gv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~  224 (260)
T 2xtp_A          194 QVKELMDCIEDLLMEKNGDHYTNGLYSLIQR  224 (260)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCCCHHHHHC--
T ss_pred             HHHHHHHHHHHHHHhCCCCcCCHHHHHHHHH
Confidence            9999999999999999999999998877763

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=97.08  E-value=0.00065  Score=59.64  Aligned_cols=93  Identities=15%  Similarity=0.215  Sum_probs=70.3

Q ss_pred             CCcHHHHHHHHHHHHHhchhhcceeEEEEecCCCCCCchhcHHHHhccCCCchHHHHHHHcC-----------CceEEEe
Q 048606            2 RFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILKLCD-----------HRCVLFD   70 (276)
Q Consensus         2 RFTeEE~~ale~Iq~lFG~~a~kytIVLFT~gDeLe~~~~tlEdyL~~~~~~~LqeLIekCG-----------gRyhvFN   70 (276)
                      +|+..+...+..|...||..+++++|||+|..|....++.++++|+.. ....|++++..|.           ..+++++
T Consensus       130 ~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~pv~~ve  208 (262)
T 3def_A          130 AVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK-RSDSLLKTIRAGSKMRKQEFEDSAIAVVYAE  208 (262)
T ss_dssp             CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHH-HHHHHHHHHHHHHTCCHHHHHHHCCEEEECC
T ss_pred             CCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHh-hhHHHHHHHHHHhCccccccccccCCEEEEe
Confidence            578889999999999999999999999999998653334789999973 4667999999987           4455677


Q ss_pred             cCCcCccc---------chhHHHHHHHHHHHHHH
Q 048606           71 NKTKYKVK---------RTEQVQQLLSLVNAVNV   95 (276)
Q Consensus        71 NK~~~~~~---------q~~QV~ELL~kIe~mV~   95 (276)
                      |...-...         ....+..||..|..|+.
T Consensus       209 ~~~~~~~n~~g~~~lp~~~~w~~~~~~~~~~~~~  242 (262)
T 3def_A          209 NSGRCSKNDKDEKALPNGEAWIPNLVKAITDVAT  242 (262)
T ss_dssp             CCTTCCBCTTSCBBCTTSCBSCC-CHHHHHHHHT
T ss_pred             CCCCCCCCCCCCeECCCCCeeHHHHHHHHHHHHh
Confidence            76431100         12367889999998875

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=96.88  E-value=0.004  Score=54.67  Aligned_cols=107  Identities=14%  Similarity=0.284  Sum_probs=76.0

Q ss_pred             CCcHHHHHHHHHHHHHhchhhcceeEEEEecCCCCCCchhcHHHHhccCCCchHHHHHHHcCCce-----------EEEe
Q 048606            2 RFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILKLCDHRC-----------VLFD   70 (276)
Q Consensus         2 RFTeEE~~ale~Iq~lFG~~a~kytIVLFT~gDeLe~~~~tlEdyL~~~~~~~LqeLIekCGgRy-----------hvFN   70 (276)
                      +|+..+...+..+...||..++.++|||+|..|-...++.++++|+.. ....|+.+++. |.++           .+.+
T Consensus       133 ~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~~-~~~~l~~~~~~-~~~~~~~~~~~~~p~~~v~  210 (270)
T 1h65_A          133 RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK-RSEALLQVVRS-GASLKKDAQASDIPVVLIE  210 (270)
T ss_dssp             CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH-HHHHHHHHHHH-HTTCCTTSGGGCCCEEECC
T ss_pred             cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHHH-HHHHHHHHHHH-hhhhhhhhhhccCCEEEEe
Confidence            588888999999999999999999999999999655433589999973 45667777753 3332           3333


Q ss_pred             cCCc------Ccc---cchhHHHHHHHHHHHHHHHcCCCCCC-hHHHHHH
Q 048606           71 NKTK------YKV---KRTEQVQQLLSLVNAVNVKNGGQPYT-NEFFAEL  110 (276)
Q Consensus        71 NK~~------~~~---~q~~QV~ELL~kIe~mV~eNgG~~YT-nemf~ea  110 (276)
                      |...      +..   ....+...||..|..++..++...+. |.++...
T Consensus       211 ~~~~~~~~~~~~~v~~~~~~w~~~Ll~~l~~~~~~~~~~l~~d~~~~~~~  260 (270)
T 1h65_A          211 NSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIFVDKNLIDKL  260 (270)
T ss_dssp             CCTTCCBCTTSCBBCTTSCBHHHHHHHHHHHHHTSSSCCEECCHHHHHHH
T ss_pred             CCCcccccCCCceECCCCCCcHHHHHHHHHHHHhcCCCceecCHHHhcCC
Confidence            3211      000   12457889999999999998887544 4555544

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=82.36  E-value=35  Score=34.13  Aligned_cols=66  Identities=18%  Similarity=0.297  Sum_probs=39.3

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhh
Q 048606          167 EDQMHESNEYQIKRITEMVESNLKETTTRLEQQLAEEQVARLKGEEVAQVAQRKSNDKIHKLRDNLESAQRE  238 (276)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~e~~l~~~~~~le~~l~~eq~arl~~e~~~~~~~~~s~~~i~~l~~~le~a~~~  238 (276)
                      -++-+++|+++|++|++.+|+.-+-....++..|    +.+|+..+  ...+.-...++..|...+..-++.
T Consensus       517 ~~~~~~~~~e~~~ql~~kme~~~~~~~~e~~~~~----~~~~~~~~--~~~~~g~~~~~~~~~~ei~~l~~~  582 (592)
T 1f5n_A          517 MEQKERSYQEHLKQLTEKMENDRVQLLKEQERTL----ALKLQEQE--QLLKEGFQKESRIMKNEIQDLQTK  582 (592)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH--HHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3456789999999999999998877766666655    22232221  122223444555555554444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	276
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	4e-08

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 50.6 bits (120), Expect = 4e-08
 Identities = 9/69 (13%), Positives = 24/69 (34%), Gaps = 1/69 (1%)

Query: 1   SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILK 60
            R    ++     +   FGK I++  IV  T       +    +++   +  + L ++++
Sbjct: 125 YRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFS-KRSEALLQVVR 183

Query: 61  LCDHRCVLF 69
                    
Sbjct: 184 SGASLKKDA 192

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	276
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	98.95

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.95  E-value=9.1e-10  Score=96.24  Aligned_cols=104  Identities=13%  Similarity=0.235  Sum_probs=82.9

Q ss_pred             CCCcHHHHHHHHHHHHHhchhhcceeEEEEecCCCCCCchhcHHHHhccCCCchHHHHHHHcCCceE----------EEe
Q 048606            1 SRFSQEEEAAVHHLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILKLCDHRCV----------LFD   70 (276)
Q Consensus         1 gRFTeEE~~ale~Iq~lFG~~a~kytIVLFT~gDeLe~~~~tlEdyL~~~~~~~LqeLIekCGgRyh----------vFN   70 (276)
                      +|||.++..+++.+..+||+.+++|+|||||++|.+..++.++++|+.. .+..++.+|..|.++++          ++.
T Consensus       125 ~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~~e~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~l~e  203 (257)
T d1h65a_         125 YRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK-RSEALLQVVRSGASLKKDAQASDIPVVLIE  203 (257)
T ss_dssp             CCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH-HHHHHHHHHHHHTTCCTTSGGGCCCEEECC
T ss_pred             CCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCcHHHHHHh-hhHHHHHHHHHHhhhhhhhccccCCEEEEe
Confidence            4799999999999999999999999999999999998766899999984 67789999999998763          444


Q ss_pred             cCCcC----ccc-----chhHHHHHHHHHHHHHHHcCCCCCChH
Q 048606           71 NKTKY----KVK-----RTEQVQQLLSLVNAVNVKNGGQPYTNE  105 (276)
Q Consensus        71 NK~~~----~~~-----q~~QV~ELL~kIe~mV~eNgG~~YTne  105 (276)
                      |....    ..+     -..++.+|+..|-.|+..+++..+.++
T Consensus       204 n~~~~~~n~~~ekvlp~~~~~~~~lv~~i~~~~~~~~~~i~~~~  247 (257)
T d1h65a_         204 NSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIFVDK  247 (257)
T ss_dssp             CCTTCCBCTTSCBBCTTSCBHHHHHHHHHHHHHTSSSCCEECCH
T ss_pred             cCCcccccccccccccCCcchHHHHHHHHHHHHHcCCCCccccH
Confidence            43210    000     136899999999999977766555444