Citrus Sinensis ID: 048618

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
Protein Sequence
NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQPCKVFSSHKQNSGAKWFAIVFPVLGAVFVSMALIAIFILRKR
Secondary Structure (PSIPRED)
ccccEEEcccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccHHHHccccccEEEccccccccccHHHHHccccccccccccccccccccHHHHccccccEEEccccccccccccccccccccHHHHccccccccccccccccccccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEEcccccccccccccccccHHHHHHccccccccccccccccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
NSLTKLILRgnqltgrlpteigsfkeleyldlsanrfnnsvpkSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLseldlshnflggELLSQICNMESLEKLNLshnnlsgsipncfegmhglsvidisdnqlqgpvpnstafrnapvealegnkelcggvkgmqpckvfsshkqnsgakWFAIVFPVLGAVFVSMALIAIFILRKR
Flexible Loop (DISEMBL)
nsltklilrgnqltgrlpteiGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQPCKVFSSHKQNSGAKWFAIVFPVLGAVFVSMALIAIFILRKR
Low Complexity Region (SEG)
NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKslgsllklhylslsNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQPCKVFSSHKQNSGAKWFAIVFPVLGAVFVSMALIAIFILRKR
Disordered region (IsUnstruct)
*****LILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDN******************ALEGNKELCGGVKGMQPCKVFSSHKQNSGAKWFAIVFPVLGAVFVSMALIAIFIL***
Disordered Region (DISOPRED)
NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGV*********************AIVFPVLGAVFVSMALIAIFILRKR
Disordered Region (DISEMBL)
NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQPCKVFSSHKQNSGAKWFAIVFPVLGAVFVSMALIAIFILRKR
Disordered Region (DISPRO)
NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQPCKVFSSHKQNSGAKWFAIVFPVLGAVFVSMALIAIFILRKR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQPCKVFSSHKQNSGAKWFAIVFPVLGAVFVSMALIAIFILRKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	207	2.2.26 [Sep-21-2011]
Q8VZG8	1045	Probable LRR receptor-lik	yes	no	1.0	0.198	0.471	3e-49
Q9LP24	1120	Probable leucine-rich rep	no	no	0.975	0.180	0.457	2e-43
O82318	960	Probably inactive leucine	no	no	0.961	0.207	0.355	1e-22
Q9FL28	1173	LRR receptor-like serine/	no	no	0.864	0.152	0.335	3e-22
O49545	1003	Leucine-rich repeat recep	no	no	0.792	0.163	0.379	5e-22
C0LGQ9	1037	Probable LRR receptor-lik	no	no	0.521	0.104	0.421	1e-21
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.951	0.165	0.333	2e-21
Q9M2Z1	1002	Leucine-rich repeat recep	no	no	0.980	0.202	0.336	3e-21
Q9M0G7	1013	Leucine-rich repeat recep	no	no	0.956	0.195	0.310	3e-21
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.995	0.187	0.311	4e-21

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  194 bits (494), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 100/212 (47%), Positives = 146/212 (68%), Gaps = 5/212 (2%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
           N ++KL L GN+L+G++P+ I     LEYLDLS+NRF++ +P +L +L +L+Y++LS N 
Sbjct: 526 NRISKLQLNGNRLSGKIPSGIRLLTNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRND 585

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
             Q +P+ L KL QL  LDLS+N L GE+ SQ  ++++LE+L+LSHNNLSG IP  F+ M
Sbjct: 586 LDQTIPEGLTKLSQLQMLDLSYNQLDGEISSQFRSLQNLERLDLSHNNLSGQIPPSFKDM 645

Query: 121 HGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGV---KGMQPCKVFSSHKQNS 177
             L+ +D+S N LQGP+P++ AFRNAP +A EGNK+LCG V   +G++PC + SS K + 
Sbjct: 646 LALTHVDVSHNNLQGPIPDNAAFRNAPPDAFEGNKDLCGSVNTTQGLKPCSITSSKKSHK 705

Query: 178 GAKW-FAIVFPVLGAVFVSMALIAIFI-LRKR 207
                  I+ P++GA+ +      IFI  RKR
Sbjct: 706 DRNLIIYILVPIIGAIIILSVCAGIFICFRKR 737

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  175 bits (444), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 96/210 (45%), Positives = 143/210 (68%), Gaps = 8/210 (3%)

Query: 3   LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFV 62
           L++L L GNQL+GR+P  +     LE LDLS+N F++ +P++  S LKLH ++LS N+F 
Sbjct: 608 LSRLRLNGNQLSGRVPAGLSFLTNLESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFD 667

Query: 63  QELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHG 122
             +P+ L KL QL++LDLSHN L GE+ SQ+ +++SL+KL+LSHNNLSG IP  FEGM  
Sbjct: 668 GSIPR-LSKLTQLTQLDLSHNQLDGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGMIA 726

Query: 123 LSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGV--KGMQPCKVFSSHKQNSGAK 180
           L+ +DIS+N+L+GP+P++  FR A  +ALE N  LC  +  + ++PC+     K+N G  
Sbjct: 727 LTNVDISNNKLEGPLPDTPTFRKATADALEENIGLCSNIPKQRLKPCRELKKPKKN-GNL 785

Query: 181 WFAIVFPVLGAVFVSMALIA---IFILRKR 207
              I+ P+LG V V +++ A    + +RKR
Sbjct: 786 VVWILVPILG-VLVILSICANTFTYCIRKR 814

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score =  106 bits (265), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/208 (35%), Positives = 103/208 (49%), Gaps = 9/208 (4%)

Query: 3   LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFV 62
           L  L L  N+  G LP +    K L+ LDLS N+ +  VP+ L +  ++  L LS N+  
Sbjct: 457 LEMLDLSVNKFFGELP-DFSRSKRLKKLDLSRNKISGVVPQGLMTFPEIMDLDLSENEIT 515

Query: 63  QELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHG 122
             +P+EL     L  LDLSHN   GE+ S     + L  L+LS N LSG IP     +  
Sbjct: 516 GVIPRELSSCKNLVNLDLSHNNFTGEIPSSFAEFQVLSDLDLSCNQLSGEIPKNLGNIES 575

Query: 123 LSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCG--GVKGMQPCKVFSSHKQNSGAK 180
           L  ++IS N L G +P + AF      A+EGN +LC      G++PCKV    ++ S   
Sbjct: 576 LVQVNISHNLLHGSLPFTGAFLAINATAVEGNIDLCSENSASGLRPCKVV---RKRSTKS 632

Query: 181 WFAIV---FPVLGAVFVSMALIAIFILR 205
           W+ I+   F    AV VS   I +   R
Sbjct: 633 WWLIITSTFAAFLAVLVSGFFIVLVFQR 660

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  105 bits (261), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 61/182 (33%), Positives = 97/182 (53%), Gaps = 3/182 (1%)

Query: 11  NQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKEL- 69
           N LTG +P E+G  + ++ +DLS N F+ S+P+SL +   +  L  S N     +P E+ 
Sbjct: 635 NLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVF 694

Query: 70  EKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDIS 129
           + +  +  L+LS N   GE+     NM  L  L+LS NNL+G IP     +  L  + ++
Sbjct: 695 QGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLA 754

Query: 130 DNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQPCKVFSSHKQNSGAKWFAIVFPVL 189
            N L+G VP S  F+N     L GN +LCG  K ++PC +    K +  +K   ++  +L
Sbjct: 755 SNNLKGHVPESGVFKNINASDLMGNTDLCGSKKPLKPCTI--KQKSSHFSKRTRVILIIL 812

Query: 190 GA 191
           G+
Sbjct: 813 GS 814

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49545|BAME1_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1

 Score =  104 bits (259), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 90/166 (54%), Gaps = 2/166 (1%)

Query: 3   LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFV 62
           L ++ L  NQL+G LP  IG+F  ++ L L  N+F   +P  +G L +L  +  S+N F 
Sbjct: 457 LGQISLSNNQLSGPLPPAIGNFTGVQKLLLDGNKFQGPIPSEVGKLQQLSKIDFSHNLFS 516

Query: 63  QELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHG 122
             +  E+ +   L+ +DLS N L GE+ ++I  M+ L  LNLS N+L GSIP     M  
Sbjct: 517 GRIAPEISRCKLLTFVDLSRNELSGEIPNEITAMKILNYLNLSRNHLVGSIPGSISSMQS 576

Query: 123 LSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQPCK 168
           L+ +D S N L G VP +  F      +  GN +LCG   G  PCK
Sbjct: 577 LTSLDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGPYLG--PCK 620

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ9|Y4294_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g20940 OS=Arabidopsis thaliana GN=At4g20940 PE=1 SV=1

 Score =  102 bits (255), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/133 (42%), Positives = 80/133 (60%)

Query: 3   LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFV 62
           L KL +  N L+G LP ++GSFK L++LDLS N F++S+PK +G  + L  LSLS N F 
Sbjct: 80  LVKLSMSNNSLSGVLPNDLGSFKSLQFLDLSDNLFSSSLPKEIGRSVSLRNLSLSGNNFS 139

Query: 63  QELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHG 122
            E+P+ +  L+ L  LD+S N L G L   +  +  L  LNLS N  +G +P  FE +  
Sbjct: 140 GEIPESMGGLISLQSLDMSSNSLSGPLPKSLTRLNDLLYLNLSSNGFTGKMPRGFELISS 199

Query: 123 LSVIDISDNQLQG 135
           L V+D+  N + G
Sbjct: 200 LEVLDLHGNSIDG 212

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  102 bits (254), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 117/228 (51%), Gaps = 31/228 (13%)

Query: 3   LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFV 62
           LT L L GN LTG +P E+G+  +L+ L+L+ N+ N  +P+S G L  L  L+L+ N+  
Sbjct: 630 LTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNKLD 689

Query: 63  QELPKELEKLVQLSELDLSHNFLGGELLSQICNMESL----------------------- 99
             +P  L  L +L+ +DLS N L GEL S++  ME L                       
Sbjct: 690 GPVPASLGNLKELTHMDLSFNNLSGELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQ 749

Query: 100 -EKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELC 158
            E L++S N LSG IP    G+  L  ++++ N L+G VP+    ++     L GNKELC
Sbjct: 750 LEYLDVSENLLSGEIPTKICGLPNLEFLNLAKNNLRGEVPSDGVCQDPSKALLSGNKELC 809

Query: 159 GGVKGMQPCKVFSSHKQNSGAKWFAIVFPVLGAVFVSMALIAIFILRK 206
           G V G   CK+  +  +++    + I   +LG  F  +  + +F LR+
Sbjct: 810 GRVVGSD-CKIEGTKLRSA----WGIAGLMLG--FTIIVFVFVFSLRR 850

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1

 Score =  101 bits (252), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 104/205 (50%), Gaps = 2/205 (0%)

Query: 3   LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFV 62
           L ++ L  NQL+G LP  IG+   ++ L L  N+F+ S+P  +G L +L  L  S+N F 
Sbjct: 458 LGQISLSNNQLSGSLPAAIGNLSGVQKLLLDGNKFSGSIPPEIGRLQQLSKLDFSHNLFS 517

Query: 63  QELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHG 122
             +  E+ +   L+ +DLS N L G++ +++  M+ L  LNLS N+L GSIP     M  
Sbjct: 518 GRIAPEISRCKLLTFVDLSRNELSGDIPNELTGMKILNYLNLSRNHLVGSIPVTIASMQS 577

Query: 123 LSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQPCKVFSSHKQNSGAKWF 182
           L+ +D S N L G VP++  F      +  GN  LCG   G  PC   +           
Sbjct: 578 LTSVDFSYNNLSGLVPSTGQFSYFNYTSFVGNSHLCGPYLG--PCGKGTHQSHVKPLSAT 635

Query: 183 AIVFPVLGAVFVSMALIAIFILRKR 207
             +  VLG +F SM    + I++ R
Sbjct: 636 TKLLLVLGLLFCSMVFAIVAIIKAR 660

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M0G7|PXL2_ARATH Leucine-rich repeat receptor-like protein kinase PXL2 OS=Arabidopsis thaliana GN=PXL2 PE=2 SV=1

 Score =  101 bits (252), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 110/232 (47%), Gaps = 34/232 (14%)

Query: 3   LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFV 62
           L +L L GN+L+G +P +I     L ++D S N+  +S+P ++ S+  L    +++N   
Sbjct: 430 LQRLELAGNRLSGGIPGDISDSVSLSFIDFSRNQIRSSLPSTILSIHNLQAFLVADNFIS 489

Query: 63  QELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHG 122
            E+P + +    LS LDLS N L G + S I + E L  LNL +NNL+G IP     M  
Sbjct: 490 GEVPDQFQDCPSLSNLDLSSNTLTGTIPSSIASCEKLVSLNLRNNNLTGEIPRQITTMSA 549

Query: 123 LSVIDISD------------------------NQLQGPVPNSTAFRNAPVEALEGNKELC 158
           L+V+D+S+                        N+L GPVP +   +    + L GN  LC
Sbjct: 550 LAVLDLSNNSLTGVLPESIGTSPALELLNVSYNKLTGPVPINGFLKTINPDDLRGNSGLC 609

Query: 159 GGVKGMQPCKVF----SSHKQNSG----AKWFAIVFPVLGAVFVSMALIAIF 202
           GGV  + PC  F    SSH    G    A W   +  VL    +++    ++
Sbjct: 610 GGV--LPPCSKFQRATSSHSSLHGKRIVAGWLIGIASVLALGILTIVTRTLY 659

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  101 bits (251), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 112/241 (46%), Gaps = 35/241 (14%)

Query: 2   SLTKLI---LRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSN 58
           +LTK++   +  NQLTG +P E+GS   ++ LDLS N+F+  + + LG L+ L  L LS+
Sbjct: 521 NLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNKFSGYIAQELGQLVYLEILRLSD 580

Query: 59  NQFVQELPKELEKLVQLSELDL-------------------------SHNFLGGELLSQI 93
           N+   E+P     L +L EL L                         SHN L G +   +
Sbjct: 581 NRLTGEIPHSFGDLTRLMELQLGGNLLSENIPVELGKLTSLQISLNISHNNLSGTIPDSL 640

Query: 94  CNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEG 153
            N++ LE L L+ N LSG IP     +  L + +IS+N L G VP++  F+        G
Sbjct: 641 GNLQMLEILYLNDNKLSGEIPASIGNLMSLLICNISNNNLVGTVPDTAVFQRMDSSNFAG 700

Query: 154 NKELCGGVKG-MQPCKVFSSHKQN------SGAKWFAIVFPVLGAVFVSMALIAIFILRK 206
           N  LC   +   QP    S  K N         K   I   V+G+VF+   L   + +++
Sbjct: 701 NHGLCNSQRSHCQPLVPHSDSKLNWLINGSQRQKILTITCIVIGSVFLITFLGLCWTIKR 760

Query: 207 R 207
           R
Sbjct: 761 R 761

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
225456161	1037	PREDICTED: probable LRR receptor-like se	0.995	0.198	0.557	3e-56
359491512	1078	PREDICTED: probable LRR receptor-like se	0.995	0.191	0.566	4e-56
225456159	1038	PREDICTED: probable LRR receptor-like se	0.995	0.198	0.552	6e-56
147772402	996	hypothetical protein VITISV_022117 [Viti	0.995	0.206	0.557	3e-55
255545702	1008	receptor protein kinase, putative [Ricin	0.990	0.203	0.540	7e-52
147767326	1032	hypothetical protein VITISV_008862 [Viti	0.985	0.197	0.546	9e-48
359491509	1032	PREDICTED: probable LRR receptor-like se	0.985	0.197	0.546	1e-47
7267528	1027	receptor protein kinase-like protein [Ar	1.0	0.201	0.471	1e-47
186511602	1045	Leucine-rich repeat-containing protein [	1.0	0.198	0.471	1e-47
186511604	1009	Leucine-rich repeat-containing protein [	1.0	0.205	0.471	2e-47

>gi|225456161|ref|XP_002278590.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 117/210 (55%), Positives = 147/210 (70%), Gaps = 4/210 (1%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           SL  LIL  NQL+G +P E+GS   LEYLDLSANR N S+P+ LG  L LHYL+LSNN+ 
Sbjct: 522 SLLGLILNDNQLSGSIPPELGSLSHLEYLDLSANRLNGSIPEHLGDCLDLHYLNLSNNKL 581

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
              +P ++ KL  LS+LDLSHN L G + +QI  +ESLE L+LSHNNL G IP  FE M 
Sbjct: 582 SHGIPVQMGKLSHLSQLDLSHNLLTGGIPAQIQGLESLEMLDLSHNNLCGFIPKAFEDMP 641

Query: 122 GLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQPCKV-FSSHKQ---NS 177
            LS +DIS NQLQGP+P+S AFRNA +E L+GNK+LCG VKG+QPCK  F   +Q    S
Sbjct: 642 ALSYVDISYNQLQGPIPHSNAFRNATIEVLKGNKDLCGNVKGLQPCKYGFGVDQQPVKKS 701

Query: 178 GAKWFAIVFPVLGAVFVSMALIAIFILRKR 207
               F I+FP+LGA+ +  A I IF++ +R
Sbjct: 702 HKVVFIIIFPLLGALVLLSAFIGIFLIAER 731

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491512|ref|XP_002278614.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 119/210 (56%), Positives = 148/210 (70%), Gaps = 4/210 (1%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           SL +L L  NQL+G +P E+GS   L +LDLSANR N S+ ++LG+ L LHYL+LSNN+ 
Sbjct: 529 SLLELKLNDNQLSGSIPPELGSLFSLAHLDLSANRLNGSITENLGACLNLHYLNLSNNKL 588

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
              +P ++ KL  LS+LDLSHN L GE+  QI  +ESLE LNLSHNNLSG IP  FE M 
Sbjct: 589 SNRIPAQMGKLSHLSQLDLSHNLLSGEIPPQIEGLESLENLNLSHNNLSGFIPKAFEEMR 648

Query: 122 GLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQPCKVFSSHKQNSGAKW 181
           GLS IDIS NQLQGP+PNS AFR+A +E L+GNK+LCG VKG+QPCK  S   Q    K 
Sbjct: 649 GLSDIDISYNQLQGPIPNSKAFRDATIELLKGNKDLCGNVKGLQPCKNDSGAGQQPVKKG 708

Query: 182 ----FAIVFPVLGAVFVSMALIAIFILRKR 207
               F IVFP+LGA+ +  A I IF++ +R
Sbjct: 709 HKIVFIIVFPLLGALVLLFAFIGIFLIAER 738

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456159|ref|XP_002278561.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  222 bits (566), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 116/210 (55%), Positives = 146/210 (69%), Gaps = 4/210 (1%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           SL  LIL  NQL+G +P E+GS   LEYLDLSANR N S+P+ LG  L LHYL+LSNN+ 
Sbjct: 522 SLLGLILNDNQLSGSIPPELGSLSHLEYLDLSANRLNGSIPEHLGDCLDLHYLNLSNNKL 581

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
              +P ++ KL  LS+LDLSHN L G +  QI  ++SLE L+LSHNNL G IP  FE M 
Sbjct: 582 SHGIPVQMGKLSHLSQLDLSHNLLAGGIPPQIQGLQSLEMLDLSHNNLCGFIPKAFEDMP 641

Query: 122 GLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQPCKV-FSSHKQ---NS 177
            LS +DIS NQLQGP+P+S AFRNA +E L+GNK+LCG VKG+QPCK  F   +Q    S
Sbjct: 642 ALSYVDISYNQLQGPIPHSNAFRNATIEVLKGNKDLCGNVKGLQPCKYGFGVDQQPVKKS 701

Query: 178 GAKWFAIVFPVLGAVFVSMALIAIFILRKR 207
               F I+FP+LGA+ +  A I IF++ +R
Sbjct: 702 HKVVFIIIFPLLGALVLLFAFIGIFLIAER 731

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147772402|emb|CAN73988.1| hypothetical protein VITISV_022117 [Vitis vinifera]

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 117/210 (55%), Positives = 147/210 (70%), Gaps = 4/210 (1%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           SL KLIL  NQL+G +P E+GS  +L YLDLSANR N S+P+ LG  L L+YL+LSNN+ 
Sbjct: 480 SLWKLILNDNQLSGNIPPELGSLADLGYLDLSANRLNGSIPEHLGDCLGLNYLNLSNNKL 539

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
              +P ++ KL  LS+LDLSHN L G++  QI  ++SLE LNLSHNNLSG IP  FE M 
Sbjct: 540 SHGIPVQMGKLGHLSQLDLSHNLLTGDIPPQIEGLQSLENLNLSHNNLSGFIPKAFEEML 599

Query: 122 GLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQPCKVFSSHKQNSGAK- 180
           GLS +DIS NQLQGP+PNS AFR+A +EAL+GNK LCG VK ++PCK  S   Q    K 
Sbjct: 600 GLSDVDISYNQLQGPIPNSKAFRDATIEALKGNKGLCGNVKRLRPCKYGSGVDQQPVKKS 659

Query: 181 ---WFAIVFPVLGAVFVSMALIAIFILRKR 207
               F I+FP+LGA+ +  A I IF++  R
Sbjct: 660 HKVVFIIIFPLLGALVLLFAFIGIFLIAAR 689

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545702|ref|XP_002513911.1| receptor protein kinase, putative [Ricinus communis] gi|223546997|gb|EEF48494.1| receptor protein kinase, putative [Ricinus communis]

 Score =  209 bits (531), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 114/211 (54%), Positives = 150/211 (71%), Gaps = 6/211 (2%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           SL ++ L  NQL+  +P+E GS  +LE LDLSANRFN S+P ++G+L+KL+YL+LSNNQF
Sbjct: 493 SLVRVNLEDNQLSDGVPSEFGSLTDLESLDLSANRFNQSIPGNIGNLVKLNYLNLSNNQF 552

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
            QE+P +L KLV LS+LDLS NFL GE+ S++  M+SLE LNLS NNLSG IP   + MH
Sbjct: 553 SQEIPIQLGKLVHLSKLDLSQNFLIGEIPSELSGMQSLEVLNLSRNNLSGFIPGDLKEMH 612

Query: 122 GLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQPCKVFSSHKQNSGAK- 180
           GLS IDIS N+L+GPVP++ AF+N+ +EA +GNK LCG V+G+QPCK  SS +Q S  K 
Sbjct: 613 GLSSIDISYNKLEGPVPDNKAFQNSSIEAFQGNKGLCGHVQGLQPCKP-SSTEQGSSIKF 671

Query: 181 ----WFAIVFPVLGAVFVSMALIAIFILRKR 207
               +  I  P+ GA  +   L  +F   KR
Sbjct: 672 HKRLFLVISLPLFGAFLILSFLGVLFFQSKR 702

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767326|emb|CAN68996.1| hypothetical protein VITISV_008862 [Vitis vinifera]

 Score =  195 bits (496), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 112/205 (54%), Positives = 144/205 (70%), Gaps = 1/205 (0%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           SL KLIL  N+L+G +P E+GS  +L YLDLS NR N S+P+ LG+ L L+YL+LSNN+ 
Sbjct: 519 SLWKLILNDNRLSGNIPPELGSLADLGYLDLSGNRLNGSIPEHLGNCLDLNYLNLSNNKL 578

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
              +P ++ KL  LS LDLSHN L GE+ SQI  ++SLEKLNLSHNNLSG IP  FE MH
Sbjct: 579 SHGIPVQMGKLSHLSLLDLSHNLLTGEIPSQIQGLQSLEKLNLSHNNLSGIIPKAFEDMH 638

Query: 122 GLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQPCKVFSSHKQNSGAKW 181
           GL  +DIS N LQG +PNS AF+N  +E L+GNK LCG VKG+QPC+  S+ K    A  
Sbjct: 639 GLWQVDISYNDLQGSIPNSEAFQNVTIEVLQGNKGLCGSVKGLQPCENRSATKGTHKAV- 697

Query: 182 FAIVFPVLGAVFVSMALIAIFILRK 206
           F I+F +LGA+ +  A I I ++ +
Sbjct: 698 FIIIFSLLGALLILSAFIGISLISQ 722

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491509|ref|XP_002278522.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 112/205 (54%), Positives = 144/205 (70%), Gaps = 1/205 (0%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           SL KLIL  N+L+G +P E+GS  +L YLDLS NR N S+P+ LG+ L L+YL+LSNN+ 
Sbjct: 519 SLWKLILNDNRLSGNIPPELGSLADLGYLDLSGNRLNGSIPEHLGNCLDLNYLNLSNNKL 578

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
              +P ++ KL  LS LDLSHN L GE+ SQI  ++SLEKLNLSHNNLSG IP  FE MH
Sbjct: 579 SHGIPVQMGKLSHLSLLDLSHNLLTGEIPSQIQGLQSLEKLNLSHNNLSGIIPKAFEDMH 638

Query: 122 GLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQPCKVFSSHKQNSGAKW 181
           GL  +DIS N LQG +PNS AF+N  +E L+GNK LCG VKG+QPC+  S+ K    A  
Sbjct: 639 GLWQVDISYNDLQGSIPNSEAFQNVTIEVLQGNKGLCGSVKGLQPCENRSATKGTHKAV- 697

Query: 182 FAIVFPVLGAVFVSMALIAIFILRK 206
           F I+F +LGA+ +  A I I ++ +
Sbjct: 698 FIIIFSLLGALLILSAFIGISLISQ 722

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7267528|emb|CAB78010.1| receptor protein kinase-like protein [Arabidopsis thaliana] gi|7321074|emb|CAB82121.1| receptor protein kinase-like protein [Arabidopsis thaliana]

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 100/212 (47%), Positives = 146/212 (68%), Gaps = 5/212 (2%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
           N ++KL L GN+L+G++P+ I     LEYLDLS+NRF++ +P +L +L +L+Y++LS N 
Sbjct: 508 NRISKLQLNGNRLSGKIPSGIRLLTNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRND 567

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
             Q +P+ L KL QL  LDLS+N L GE+ SQ  ++++LE+L+LSHNNLSG IP  F+ M
Sbjct: 568 LDQTIPEGLTKLSQLQMLDLSYNQLDGEISSQFRSLQNLERLDLSHNNLSGQIPPSFKDM 627

Query: 121 HGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGV---KGMQPCKVFSSHKQNS 177
             L+ +D+S N LQGP+P++ AFRNAP +A EGNK+LCG V   +G++PC + SS K + 
Sbjct: 628 LALTHVDVSHNNLQGPIPDNAAFRNAPPDAFEGNKDLCGSVNTTQGLKPCSITSSKKSHK 687

Query: 178 GAKW-FAIVFPVLGAVFVSMALIAIFI-LRKR 207
                  I+ P++GA+ +      IFI  RKR
Sbjct: 688 DRNLIIYILVPIIGAIIILSVCAGIFICFRKR 719

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186511602|ref|NP_849538.2| Leucine-rich repeat-containing protein [Arabidopsis thaliana] gi|281185491|sp|Q8VZG8.3|Y4885_ARATH RecName: Full=Probable LRR receptor-like serine/threonine-protein kinase At4g08850; Flags: Precursor gi|18086327|gb|AAL57627.1| AT4g08850/T32A17_160 [Arabidopsis thaliana] gi|224589610|gb|ACN59338.1| leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana] gi|332657282|gb|AEE82682.1| Leucine-rich repeat-containing protein [Arabidopsis thaliana]

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 100/212 (47%), Positives = 146/212 (68%), Gaps = 5/212 (2%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
           N ++KL L GN+L+G++P+ I     LEYLDLS+NRF++ +P +L +L +L+Y++LS N 
Sbjct: 526 NRISKLQLNGNRLSGKIPSGIRLLTNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRND 585

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
             Q +P+ L KL QL  LDLS+N L GE+ SQ  ++++LE+L+LSHNNLSG IP  F+ M
Sbjct: 586 LDQTIPEGLTKLSQLQMLDLSYNQLDGEISSQFRSLQNLERLDLSHNNLSGQIPPSFKDM 645

Query: 121 HGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGV---KGMQPCKVFSSHKQNS 177
             L+ +D+S N LQGP+P++ AFRNAP +A EGNK+LCG V   +G++PC + SS K + 
Sbjct: 646 LALTHVDVSHNNLQGPIPDNAAFRNAPPDAFEGNKDLCGSVNTTQGLKPCSITSSKKSHK 705

Query: 178 GAKW-FAIVFPVLGAVFVSMALIAIFI-LRKR 207
                  I+ P++GA+ +      IFI  RKR
Sbjct: 706 DRNLIIYILVPIIGAIIILSVCAGIFICFRKR 737

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186511604|ref|NP_192625.4| Leucine-rich repeat-containing protein [Arabidopsis thaliana] gi|222423559|dbj|BAH19749.1| AT4G08850 [Arabidopsis thaliana] gi|332657283|gb|AEE82683.1| Leucine-rich repeat-containing protein [Arabidopsis thaliana]

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 100/212 (47%), Positives = 146/212 (68%), Gaps = 5/212 (2%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
           N ++KL L GN+L+G++P+ I     LEYLDLS+NRF++ +P +L +L +L+Y++LS N 
Sbjct: 526 NRISKLQLNGNRLSGKIPSGIRLLTNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRND 585

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
             Q +P+ L KL QL  LDLS+N L GE+ SQ  ++++LE+L+LSHNNLSG IP  F+ M
Sbjct: 586 LDQTIPEGLTKLSQLQMLDLSYNQLDGEISSQFRSLQNLERLDLSHNNLSGQIPPSFKDM 645

Query: 121 HGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGV---KGMQPCKVFSSHKQNS 177
             L+ +D+S N LQGP+P++ AFRNAP +A EGNK+LCG V   +G++PC + SS K + 
Sbjct: 646 LALTHVDVSHNNLQGPIPDNAAFRNAPPDAFEGNKDLCGSVNTTQGLKPCSITSSKKSHK 705

Query: 178 GAKW-FAIVFPVLGAVFVSMALIAIFI-LRKR 207
                  I+ P++GA+ +      IFI  RKR
Sbjct: 706 DRNLIIYILVPIIGAIIILSVCAGIFICFRKR 737

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
TAIR|locus:2138268	1045	AT4G08850 [Arabidopsis thalian	1.0	0.198	0.443	4.5e-42
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.975	0.180	0.419	3.5e-37
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.927	0.163	0.311	7.1e-22
TAIR|locus:2046525	1124	AT2G33170 [Arabidopsis thalian	0.961	0.177	0.344	3.7e-21
TAIR|locus:2169965	1003	BAM1 "BARELY ANY MERISTEM 1" [	0.985	0.203	0.327	6.6e-21
TAIR|locus:2054421	890	AT2G41820 [Arabidopsis thalian	0.990	0.230	0.319	7e-21
TAIR|locus:2161825	1090	AT5G56040 [Arabidopsis thalian	0.951	0.180	0.330	7.5e-21
TAIR|locus:2097310	1002	BAM2 "BARELY ANY MERISTEM 2" [	0.971	0.200	0.323	8.4e-21
TAIR|locus:2033379	685	AT1G66830 [Arabidopsis thalian	0.980	0.296	0.336	9.1e-21
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.618	0.128	0.342	8.6e-13

TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 4.5e-42, P = 4.5e-42
 Identities = 94/212 (44%), Positives = 134/212 (63%)

Query:     1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKXXXXXXXXXXXXXXNNQ 60
             N ++KL L GN+L+G++P+ I     LEYLDLS+NRF++ +P                N 
Sbjct:   526 NRISKLQLNGNRLSGKIPSGIRLLTNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRND 585

Query:    61 FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
               Q +P+ L KL QL  LDLS+N L GE+ SQ  ++++LE+L+LSHNNLSG IP  F+ M
Sbjct:   586 LDQTIPEGLTKLSQLQMLDLSYNQLDGEISSQFRSLQNLERLDLSHNNLSGQIPPSFKDM 645

Query:   121 HGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGV---KGMQPCKVFSSHKQNS 177
               L+ +D+S N LQGP+P++ AFRNAP +A EGNK+LCG V   +G++PC + SS K + 
Sbjct:   646 LALTHVDVSHNNLQGPIPDNAAFRNAPPDAFEGNKDLCGSVNTTQGLKPCSITSSKKSHK 705

Query:   178 GAKWFA-IVFPVLGAVFVSMALIAIFI-LRKR 207
                    I+ P++GA+ +      IFI  RKR
Sbjct:   706 DRNLIIYILVPIIGAIIILSVCAGIFICFRKR 737

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 411 (149.7 bits), Expect = 3.5e-37, P = 3.5e-37
 Identities = 89/212 (41%), Positives = 134/212 (63%)

Query:     2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKXXXXXXXXXXXXXXNNQF 61
             +L++L L GNQL+GR+P  +     LE LDLS+N F++ +P+               N+F
Sbjct:   607 NLSRLRLNGNQLSGRVPAGLSFLTNLESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKF 666

Query:    62 VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
                +P+ L KL QL++LDLSHN L GE+ SQ+ +++SL+KL+LSHNNLSG IP  FEGM 
Sbjct:   667 DGSIPR-LSKLTQLTQLDLSHNQLDGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGMI 725

Query:   122 GLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGV--KGMQPCKVFSSHKQNSG- 178
              L+ +DIS+N+L+GP+P++  FR A  +ALE N  LC  +  + ++PC+     K+N   
Sbjct:   726 ALTNVDISNNKLEGPLPDTPTFRKATADALEENIGLCSNIPKQRLKPCRELKKPKKNGNL 785

Query:   179 AKWFAIVFPVLGAVFVSMALIA---IFILRKR 207
               W  I+ P+LG V V +++ A    + +RKR
Sbjct:   786 VVW--ILVPILG-VLVILSICANTFTYCIRKR 814

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 7.1e-22, P = 7.1e-22
 Identities = 61/196 (31%), Positives = 98/196 (50%)

Query:    11 NQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKXXXXXXXXXXXXXXNNQFVQELPKEL- 69
             N LTG +P E+G  + ++ +DLS N F+ S+P+               N     +P E+ 
Sbjct:   635 NLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVF 694

Query:    70 EKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDIS 129
             + +  +  L+LS N   GE+     NM  L  L+LS NNL+G IP     +  L  + ++
Sbjct:   695 QGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLA 754

Query:   130 DNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQPCKVFSSHKQNSGAKWFAIVFPVL 189
              N L+G VP S  F+N     L GN +LCG  K ++PC +    K +  +K   ++  +L
Sbjct:   755 SNNLKGHVPESGVFKNINASDLMGNTDLCGSKKPLKPCTI--KQKSSHFSKRTRVILIIL 812

Query:   190 G-AVFVSMALIAIFIL 204
             G A  + + L+ + IL
Sbjct:   813 GSAAALLLVLLLVLIL 828

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 3.7e-21, P = 3.7e-21
 Identities = 72/209 (34%), Positives = 105/209 (50%)

Query:     3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKXXXXXXXXXXXXXXNNQFV 62
             L +L L  N   G LP E+GS  +LE L LS NRF+ ++P                N F 
Sbjct:   567 LQRLDLSRNSFIGSLPPELGSLHQLEILRLSENRFSGNIPFTIGNLTHLTELQMGGNLFS 626

Query:    63 QELPKELEKLVQLS-ELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
               +P +L  L  L   ++LS+N   GE+  +I N+  L  L+L++N+LSG IP  FE + 
Sbjct:   627 GSIPPQLGLLSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSGEIPTTFENLS 686

Query:   122 GLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGG-VKGMQPCKV----FSSHKQN 176
              L   + S N L G +P++  F+N  + +  GNK LCGG ++   P        SS K  
Sbjct:   687 SLLGCNFSYNNLTGQLPHTQIFQNMTLTSFLGNKGLCGGHLRSCDPSHSSWPHISSLKAG 746

Query:   177 SGAKW--FAIVFPVLGAVFVSMALIAIFI 203
             S  +     IV  V+G +  S+ LIAI +
Sbjct:   747 SARRGRIIIIVSSVIGGI--SLLLIAIVV 773

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

TAIR|locus:2169965 BAM1 "BARELY ANY MERISTEM 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 6.6e-21, P = 6.6e-21
 Identities = 69/211 (32%), Positives = 102/211 (48%)

Query:     2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKXXXXXXXXXXXXXXNNQF 61
             +L ++ L  NQL+G LP  IG+F  ++ L L  N+F   +P               +N F
Sbjct:   456 NLGQISLSNNQLSGPLPPAIGNFTGVQKLLLDGNKFQGPIPSEVGKLQQLSKIDFSHNLF 515

Query:    62 VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
                +  E+ +   L+ +DLS N L GE+ ++I  M+ L  LNLS N+L GSIP     M 
Sbjct:   516 SGRIAPEISRCKLLTFVDLSRNELSGEIPNEITAMKILNYLNLSRNHLVGSIPGSISSMQ 575

Query:   122 GLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQPCK---VFSSHKQNSG 178
              L+ +D S N L G VP +  F      +  GN +LCG   G  PCK       H+ +S 
Sbjct:   576 SLTSLDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGPYLG--PCKDGVAKGGHQSHSK 633

Query:   179 AKWFAIV--FPVLGAVFVSMALIAIFILRKR 207
                 A +    VLG +  S+A   + I++ R
Sbjct:   634 GPLSASMKLLLVLGLLVCSIAFAVVAIIKAR 664

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=IGI;RCA

GO:0048229 "gametophyte development" evidence=IGI

GO:0048437 "floral organ development" evidence=IGI

GO:0010480 "microsporocyte differentiation" evidence=IGI

GO:0048653 "anther development" evidence=IGI;RCA

GO:0009934 "regulation of meristem structural organization" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0043621 "protein self-association" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2054421 AT2G41820 [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 7.0e-21, P = 7.0e-21
 Identities = 68/213 (31%), Positives = 106/213 (49%)

Query:     2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKXXXXXXXXXXXXXXNNQF 61
             +L KL L  N+L G +P E+ S   L+YL L  N     +P                N  
Sbjct:   351 NLNKLDLSNNRLNGTIPKELCSMPRLQYLLLDQNSIRGDIPHEIGNCVKLLQLQLGRNYL 410

Query:    62 VQELPKELEKLVQLS-ELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
                +P E+ ++  L   L+LS N L G L  ++  ++ L  L++S+N L+GSIP   +GM
Sbjct:   411 TGTIPPEIGRMRNLQIALNLSFNHLHGSLPPELGKLDKLVSLDVSNNLLTGSIPPLLKGM 470

Query:   121 HGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQPCKVFSS--HKQNSG 178
               L  ++ S+N L GPVP    F+ +P  +  GNKELCG       C       H + + 
Sbjct:   471 MSLIEVNFSNNLLNGPVPVFVPFQKSPNSSFLGNKELCGAPLSSS-CGYSEDLDHLRYNH 529

Query:   179 AKWFAIVFPVLG---AVFVSMALIAI-FILRKR 207
                + IV  V+G   AVFVS+ ++ + F++R++
Sbjct:   530 RVSYRIVLAVIGSGVAVFVSVTVVVLLFMMREK 562

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

TAIR|locus:2161825 AT5G56040 [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 7.5e-21, P = 7.5e-21
 Identities = 68/206 (33%), Positives = 107/206 (51%)

Query:     2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKXXXXXXXXXXXXXXNNQF 61
             SL  + L  N LTG LPT IGS  EL  L+L+ NRF+  +P+              +N F
Sbjct:   528 SLQFIDLSDNSLTGSLPTGIGSLTELTKLNLAKNRFSGEIPREISSCRSLQLLNLGDNGF 587

Query:    62 VQELPKELEKLVQLS-ELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
               E+P EL ++  L+  L+LS N   GE+ S+  ++ +L  L++SHN L+G++ N    +
Sbjct:   588 TGEIPNELGRIPSLAISLNLSCNHFTGEIPSRFSSLTNLGTLDVSHNKLAGNL-NVLADL 646

Query:   121 HGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQPCKVFSSHKQNSGAK 180
               L  ++IS N+  G +PN+  FR  P+  LE NK L   +       + + H+  S  K
Sbjct:   647 QNLVSLNISFNEFSGELPNTLFFRKLPLSVLESNKGLF--ISTRPENGIQTRHR--SAVK 702

Query:   181 WFAIVFPVLGAVFVSMALIAIFILRK 206
                +   +L A  V + L+A++ L K
Sbjct:   703 ---VTMSILVAASVVLVLMAVYTLVK 725

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2097310 BAM2 "BARELY ANY MERISTEM 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 8.4e-21, P = 8.4e-21
 Identities = 67/207 (32%), Positives = 101/207 (48%)

Query:     3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKXXXXXXXXXXXXXXNNQFV 62
             L ++ L  NQL+G LP  IG+   ++ L L  N+F+ S+P               +N F 
Sbjct:   458 LGQISLSNNQLSGSLPAAIGNLSGVQKLLLDGNKFSGSIPPEIGRLQQLSKLDFSHNLFS 517

Query:    63 QELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHG 122
               +  E+ +   L+ +DLS N L G++ +++  M+ L  LNLS N+L GSIP     M  
Sbjct:   518 GRIAPEISRCKLLTFVDLSRNELSGDIPNELTGMKILNYLNLSRNHLVGSIPVTIASMQS 577

Query:   123 LSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQPCK--VFSSHKQNSGAK 180
             L+ +D S N L G VP++  F      +  GN  LCG   G  PC      SH +   A 
Sbjct:   578 LTSVDFSYNNLSGLVPSTGQFSYFNYTSFVGNSHLCGPYLG--PCGKGTHQSHVKPLSAT 635

Query:   181 WFAIVFPVLGAVFVSMALIAIFILRKR 207
                ++  VLG +F SM    + I++ R
Sbjct:   636 TKLLL--VLGLLFCSMVFAIVAIIKAR 660

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=IGI;RCA

GO:0048229 "gametophyte development" evidence=IGI

GO:0048437 "floral organ development" evidence=IGI

GO:0010480 "microsporocyte differentiation" evidence=IGI

GO:0048653 "anther development" evidence=IGI;RCA

GO:0009934 "regulation of meristem structural organization" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2033379 AT1G66830 [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 9.1e-21, P = 9.1e-21
 Identities = 73/217 (33%), Positives = 104/217 (47%)

Query:     3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKXXXXXXXXXXXXXXNNQFV 62
             L  L+L GN  +G +P EIGS K L  LDLS N FN S+                 N F 
Sbjct:   116 LQSLVLSGNSFSGFVPEEIGSLKSLMTLDLSENSFNGSISLSLIPCKKLKTLVLSKNSFS 175

Query:    63 QELPKEL-EKLVQLSELDLSHNFLGGELLSQICNMESLE-KLNLSHNNLSGSIPNCFEGM 120
              +LP  L   LV L  L+LS N L G +   + ++E+L+  L+LSHN  SG IP     +
Sbjct:   176 GDLPTGLGSNLVHLRTLNLSFNRLTGTIPEDVGSLENLKGTLDLSHNFFSGMIPTSLGNL 235

Query:   121 HGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCG-------GVKGMQ--PCKVFS 171
               L  +D+S N L GP+P      NA   A +GN  LCG         +  Q  P ++++
Sbjct:   236 PELLYVDLSYNNLSGPIPKFNVLLNAGPNAFQGNPFLCGLPIKISCSTRNTQVVPSQLYT 295

Query:   172 SHKQNSGAKWFAIVFPVLGAV--FVSMALIAIFILRK 206
               + N  ++   I+    G V   + +A + I+ LRK
Sbjct:   296 -RRANHHSRLCIILTATGGTVAGIIFLASLFIYYLRK 331

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 8.6e-13, P = 8.6e-13
 Identities = 49/143 (34%), Positives = 70/143 (48%)

Query:     2 SLTKLILRGNQLTGRLPT-EIGSFKELEYLDLSANRFNNSVP-KXXXXXXXXXXXXXXNN 59
             SL  L L GN + G  P  E+     +E LDLS NRFN S+P +              +N
Sbjct:   174 SLKSLSLWGNNMGGPFPAKELRDLTNVELLDLSRNRFNGSIPVRALFALRKLKALDLSDN 233

Query:    60 QFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEG 119
             +F              S ++L   F   + LS  C  +++E+L LS+N L+G  P C   
Sbjct:   234 EFS-------------SSVELQGKFAKTKPLSGTCPWKNMEELKLSNNKLAGQFPLCLTS 280

Query:   120 MHGLSVIDISDNQLQGPVPNSTA 142
             + GL V+D+S NQL G VP++ A
Sbjct:   281 LTGLRVLDLSSNQLTGNVPSALA 303

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT4G08850	kinase; kinase; FUNCTIONS IN- kinase activity; INVOLVED IN- protein amino acid phosphorylation; LOCATED IN- plasma membrane, membrane; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Protein kinase, ATP binding site (InterPro-IPR017441), Protein kinase, core (InterPro-IPR000719), Leucine-rich repeat, N-terminal (InterPro-IPR013210), Tyrosine protein kinase, active site (InterPro-IPR008266), Leucine-rich repeat (InterPro-IPR001611), Serine/threonine protein kinase-related (InterPro-IPR017442), Protein kinase-like (InterPro-IPR011009); B [...] (1045 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	Rps2	RPS2 (RESISTANT TO P. SYRINGAE 2); protein binding; Encodes a plasma membrane protein with leuc [...] (909 aa)				•	•			•	0.878
	AT2G31880	leucine-rich repeat transmembrane protein kinase, putative; Encodes a putative leucine rich rep [...] (641 aa)				•				•	0.754
	AT5G48380	leucine-rich repeat family protein / protein kinase family protein; leucine-rich repeat family [...] (620 aa)				•				•	0.704
	EDA39	EDA39 (embryo sac development arrest 39); calmodulin binding; embryo sac development arrest 39 [...] (526 aa)				•					0.696
	RPP13L4	disease resistance protein (CC-NBS-LRR class), putative; disease resistance protein (CC-NBS-LRR [...] (852 aa)				•					0.645
	AT2G39210	nodulin family protein; nodulin family protein; FUNCTIONS IN- molecular_function unknown; INVOL [...] (601 aa)				•					0.641
	PEN3	PEN3 (PENETRATION 3); ATPase, coupled to transmembrane movement of substances / cadmium ion tra [...] (1469 aa)				•					0.631
	DL3220C	zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein; zinc finge [...] (376 aa)				•					0.625
	AT1G19380	unknown protein; unknown protein; INVOLVED IN- biological_process unknown; EXPRESSED IN- 24 pla [...] (147 aa)				•			•		0.614
	AT4G38550	unknown protein; LOCATED IN- chloroplast; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- [...] (612 aa)				•					0.605

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	207
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-33
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-25
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-22
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-20
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-18
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-18
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-10
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  125 bits (315), Expect = 3e-33
 Identities = 84/211 (39%), Positives = 114/211 (54%), Gaps = 12/211 (5%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           SL  L L  N+  G LP   GS K LE LDLS N+F+ +VP+ LGSL +L  L LS N+ 
Sbjct: 453 SLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL 511

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
             E+P EL    +L  LDLSHN L G++ +    M  L +L+LS N LSG IP     + 
Sbjct: 512 SGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVE 571

Query: 122 GLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVK--GMQPCKVFSSHKQNSGA 179
            L  ++IS N L G +P++ AF      A+ GN +LCGG    G+ PCK           
Sbjct: 572 SLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRVRKTPS---- 627

Query: 180 KWFAIVFPVLGAVFVSMALIA---IFILRKR 207
            W+  +   LGA F+ +AL+A   +FI  + 
Sbjct: 628 -WWFYITCTLGA-FLVLALVAFGFVFIRGRN 656

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  103 bits (258), Expect = 1e-25
 Identities = 53/138 (38%), Positives = 82/138 (59%)

Query: 3   LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFV 62
           L  L L  N L+G +P +IGSF  L+ LDL  N     +P SL +L  L +L+L++NQ V
Sbjct: 142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV 201

Query: 63  QELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHG 122
            ++P+EL ++  L  + L +N L GE+  +I  + SL  L+L +NNL+G IP+    +  
Sbjct: 202 GQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKN 261

Query: 123 LSVIDISDNQLQGPVPNS 140
           L  + +  N+L GP+P S
Sbjct: 262 LQYLFLYQNKLSGPIPPS 279

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 94.9 bits (236), Expect = 1e-22
 Identities = 51/144 (35%), Positives = 74/144 (51%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           SL  + L  N L+G +P EIG    L +LDL  N     +P SLG+L  L YL L  N+ 
Sbjct: 213 SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
              +P  +  L +L  LDLS N L GE+   +  +++LE L+L  NN +G IP     + 
Sbjct: 273 SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLP 332

Query: 122 GLSVIDISDNQLQGPVPNSTAFRN 145
            L V+ +  N+  G +P +    N
Sbjct: 333 RLQVLQLWSNKFSGEIPKNLGKHN 356

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 88.0 bits (218), Expect = 2e-20
 Identities = 55/140 (39%), Positives = 76/140 (54%), Gaps = 1/140 (0%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
           N+LT L L  N LTG +P  + S   L  L L +N     +PKSLG+   L  + L +N 
Sbjct: 356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS 415

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
           F  ELP E  KL  +  LD+S+N L G + S+  +M SL+ L+L+ N   G +P+ F G 
Sbjct: 416 FSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GS 474

Query: 121 HGLSVIDISDNQLQGPVPNS 140
             L  +D+S NQ  G VP  
Sbjct: 475 KRLENLDLSRNQFSGAVPRK 494

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 82.2 bits (203), Expect = 3e-18
 Identities = 54/140 (38%), Positives = 74/140 (52%), Gaps = 3/140 (2%)

Query: 2   SLTKLI---LRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSN 58
           SL KLI   L  N L+G +P  +   + LE L L +N F   +P +L SL +L  L L +
Sbjct: 282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341

Query: 59  NQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFE 118
           N+F  E+PK L K   L+ LDLS N L GE+   +C+  +L KL L  N+L G IP    
Sbjct: 342 NKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG 401

Query: 119 GMHGLSVIDISDNQLQGPVP 138
               L  + + DN   G +P
Sbjct: 402 ACRSLRRVRLQDNSFSGELP 421

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 80.7 bits (199), Expect = 8e-18
 Identities = 51/133 (38%), Positives = 70/133 (52%), Gaps = 3/133 (2%)

Query: 8   LRGNQLTGRLPTEI-GSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELP 66
           L  NQL+G +P +I  +   L YL+LS N F  S+P+  GS+  L  L LSNN    E+P
Sbjct: 100 LSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIP 157

Query: 67  KELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVI 126
            ++     L  LDL  N L G++ + + N+ SLE L L+ N L G IP     M  L  I
Sbjct: 158 NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217

Query: 127 DISDNQLQGPVPN 139
            +  N L G +P 
Sbjct: 218 YLGYNNLSGEIPY 230

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 68.7 bits (168), Expect = 1e-13
 Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 9/156 (5%)

Query: 54  LSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSI 113
           L L N      +P ++ KL  L  ++LS N + G +   + ++ SLE L+LS+N+ +GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 114 PNCFEGMHGLSVIDISDNQLQGPVPNSTAFR--NAPVEALEGNKELCGGVKGMQPCKVFS 171
           P     +  L +++++ N L G VP +   R  +        N  LC G+ G++ C    
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC-GIPGLRAC---G 538

Query: 172 SHKQNSGAKWFAIVFPVLGAVFVSMALIAIFILRKR 207
            H  + GAK   I F V  A F+ + + A+   ++R
Sbjct: 539 PH-LSVGAK-IGIAFGVSVA-FLFLVICAMCWWKRR 571

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 66.8 bits (163), Expect = 5e-13
 Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 2/159 (1%)

Query: 3   LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFV 62
           L  L L  N+ +G +P  +G    L  LDLS N     +P+ L S   L  L L +N   
Sbjct: 334 LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLE 393

Query: 63  QELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHG 122
            E+PK L     L  + L  N   GEL S+   +  +  L++S+NNL G I +    M  
Sbjct: 394 GEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPS 453

Query: 123 LSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGV 161
           L ++ ++ N+  G +P+S  F +  +E L+ ++    G 
Sbjct: 454 LQMLSLARNKFFGGLPDS--FGSKRLENLDLSRNQFSGA 490

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 66.4 bits (162), Expect = 7e-13
 Identities = 43/137 (31%), Positives = 74/137 (54%), Gaps = 3/137 (2%)

Query: 3   LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSL-LKLHYLSLSNNQF 61
           +  + L G  ++G++ + I     ++ ++LS N+ +  +P  + +    L YL+LSNN F
Sbjct: 71  VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF 130

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
              +P+    +  L  LDLS+N L GE+ + I +  SL+ L+L  N L G IPN    + 
Sbjct: 131 TGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT 188

Query: 122 GLSVIDISDNQLQGPVP 138
            L  + ++ NQL G +P
Sbjct: 189 SLEFLTLASNQLVGQIP 205

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.4 bits (144), Expect = 1e-10
 Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 11  NQ-LTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKEL 69
           NQ L G +P +I   + L+ ++LS N    ++P SLGS+  L  L LS N F   +P+ L
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 70  EKLVQLSELDLSHNFLGGEL 89
            +L  L  L+L+ N L G +
Sbjct: 487 GQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.4 bits (144), Expect = 2e-10
 Identities = 29/67 (43%), Positives = 38/67 (56%)

Query: 3   LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFV 62
           L  + L GN + G +P  +GS   LE LDLS N FN S+P+SLG L  L  L+L+ N   
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 63  QELPKEL 69
             +P  L
Sbjct: 504 GRVPAAL 510

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 55.4 bits (133), Expect = 3e-09
 Identities = 49/151 (32%), Positives = 71/151 (47%), Gaps = 6/151 (3%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           +L  L L  N L+  LP  + +   L  LDLS N+ +  +P  +  L  L  L LSNN  
Sbjct: 164 NLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNS- 220

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
           + EL   L  L  LS L+LS+N L  +L   I N+ +LE L+LS+N +  S  +    + 
Sbjct: 221 IIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQI--SSISSLGSLT 277

Query: 122 GLSVIDISDNQLQGPVPNSTAFRNAPVEALE 152
            L  +D+S N L   +P            L 
Sbjct: 278 NLRELDLSGNSLSNALPLIALLLLLLELLLN 308

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 21/66 (31%), Positives = 35/66 (53%)

Query: 75  LSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQ 134
           +  L L +  L G + + I  +  L+ +NLS N++ G+IP     +  L V+D+S N   
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 135 GPVPNS 140
           G +P S
Sbjct: 480 GSIPES 485

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 41/156 (26%), Positives = 62/156 (39%), Gaps = 22/156 (14%)

Query: 3   LTKLILRGNQLTGR----LPTEIGSFKELEYLDLSAN------RFNNSVPKSLGSLLKLH 52
           L  L L GN L       L + +     L+ L LS N      R   S+ + L     L 
Sbjct: 25  LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQ 84

Query: 53  YLSLSNNQFVQELPKELEKLVQ---LSELDLSHNFLGGELLSQIC-----NMESLEKLNL 104
            L LS+N    +    LE L++   L EL L++N LG   L  +         +LEKL L
Sbjct: 85  ELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVL 144

Query: 105 SHNNLSG----SIPNCFEGMHGLSVIDISDNQLQGP 136
             N L G    ++         L  +++++N +   
Sbjct: 145 GRNRLEGASCEALAKALRANRDLKELNLANNGIGDA 180

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.2 bits (108), Expect = 4e-07
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 74  QLSELDLSHNFLGGELLSQIC--NMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDN 131
            L  LDLS+N L    +       + +L+ L+LS NNL+   P  F G+  L  +D+S N
Sbjct: 1   NLKSLDLSNNRLTV--IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Query: 132 QL 133
            L
Sbjct: 59  NL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 4/103 (3%)

Query: 54  LSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNM-ESLEKLNLSHNNLSGS 112
           + LS      ++   + +L  +  ++LS+N L G +   I     SL  LNLS+NN +GS
Sbjct: 74  IDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS 133

Query: 113 IPNCFEGMHGLSVIDISDNQLQGPVPNSTA-FRNAPVEALEGN 154
           IP     +  L  +D+S+N L G +PN    F +  V  L GN
Sbjct: 134 IPRGS--IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN 174

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 74  QLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIP-NCFEGMHGLSVIDISDNQ 132
           ++  +DLS   + G++ S I  +  ++ +NLS+N LSG IP + F     L  +++S+N 
Sbjct: 70  RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN 129

Query: 133 LQGPVPNSTAF 143
             G +P  +  
Sbjct: 130 FTGSIPRGSIP 140

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 6/123 (4%)

Query: 25  KELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLV-QLSELDLSHN 83
             L  LDL+ NR  ++    L  L  L  L L NN    ++P  +  L   L ELDLS N
Sbjct: 93  LPLPSLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDN 150

Query: 84  FLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAF 143
            +   L S + N+ +L+ L+LS N+LS  +P     +  L+ +D+S N++   +P     
Sbjct: 151 KIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL 207

Query: 144 RNA 146
            +A
Sbjct: 208 LSA 210

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 41/126 (32%), Positives = 59/126 (46%), Gaps = 17/126 (13%)

Query: 2   SLTKLILRGNQLTGR-LPTEIGSFKE----LEYLDLSANRFNNSVPKSLGSLL----KLH 52
           SL +L L  N L  R L       K+    LE L L  NR   +  ++L   L     L 
Sbjct: 109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLK 168

Query: 53  YLSLSNNQF----VQELPKELEKLVQLSELDLSHNFLGGELLSQIC----NMESLEKLNL 104
            L+L+NN      ++ L + L+    L  LDL++N L  E  S +     +++SLE LNL
Sbjct: 169 ELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNL 228

Query: 105 SHNNLS 110
             NNL+
Sbjct: 229 GDNNLT 234

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 17/125 (13%)

Query: 2   SLTKLILRGNQLTGRLPTEIG----SFKELEYLDLSANRFNNSVPKSLGSLLK----LHY 53
           +L KL+L  N+L G     +     + ++L+ L+L+ N   ++  ++L   LK    L  
Sbjct: 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEV 197

Query: 54  LSLSNNQF----VQELPKELEKLVQLSELDLSHNFLGGELLSQICN-----MESLEKLNL 104
           L L+NN         L + L  L  L  L+L  N L     + + +       SL  L+L
Sbjct: 198 LDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSL 257

Query: 105 SHNNL 109
           S N++
Sbjct: 258 SCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.001
 Identities = 21/57 (36%), Positives = 24/57 (42%)

Query: 27 LEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHN 83
          L+ LDLS NR       +   L  L  L LS N      P+    L  L  LDLS N
Sbjct: 2  LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.001
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 2  SLTKLILRGNQLTGRLPTEI-GSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
          +L  L L  N+LT  +P         L+ LDLS N   +  P++   L  L  L LS N 
Sbjct: 1  NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 61 F 61
           
Sbjct: 60 L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 34.8 bits (81), Expect = 0.003
 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 50  KLHYLSLSNNQFVQELPKE-LEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNN 108
            L  L LSNN+    +P    + L  L  LDLS N L          + SL  L+LS NN
Sbjct: 1   NLKSLDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 109 L 109
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 34.8 bits (81), Expect = 0.003
 Identities = 14/37 (37%), Positives = 23/37 (62%)

Query: 98  SLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQ 134
           +L+ L+LS+N L+      F+G+  L V+D+S N L 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT 37

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	207
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.92
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.82
PLN03150	623	hypothetical protein; Provisional	99.72
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.71
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.68
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.67
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.63
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.63
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.51
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.5
PLN03150	623	hypothetical protein; Provisional	99.48
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.46
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.46
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.39
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.37
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.35
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.32
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.29
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.28
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.28
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.27
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.23
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.22
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.19
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.17
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.12
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.12
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.1
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.03
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.03
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.03
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.98
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.89
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.88
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.78
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.76
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.68
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.61
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.57
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.54
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.53
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.53
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.47
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.45
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.45
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.45
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.42
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.37
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.3
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.26
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.16
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.06
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.96
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.96
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.95
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.78
PRK15386	426	type III secretion protein GogB; Provisional	97.76
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.74
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.73
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.71
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.63
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.51
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.49
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.39
PRK15386	426	type III secretion protein GogB; Provisional	96.89
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.65
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.55
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	96.11
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.06
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.04
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	94.96
PTZ00382	96	Variant-specific surface protein (VSP); Provisiona	94.89
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.88
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.73
smart00370	26	LRR Leucine-rich repeats, outliers.	94.22
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.22
KOG4308	478	consensus LRR-containing protein [Function unknown	94.12
TIGR01478	295	STEVOR variant surface antigen, stevor family. Thi	94.08
PTZ00370	296	STEVOR; Provisional	94.02
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.0
smart00370	26	LRR Leucine-rich repeats, outliers.	94.0
PF14991	118	MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P	93.91
KOG1947	482	consensus Leucine rich repeat proteins, some prote	93.87
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.33
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.91
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	92.83
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	92.7
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	92.29
PF15102	146	TMEM154: TMEM154 protein family	91.82
KOG4308	478	consensus LRR-containing protein [Function unknown	91.41
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	91.23
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.75
PF02009	299	Rifin_STEVOR: Rifin/stevor family; InterPro: IPR00	88.92
PF12191	129	stn_TNFRSF12A: Tumour necrosis factor receptor stn	88.11
PF01034	64	Syndecan: Syndecan domain; InterPro: IPR001050 The	87.45
PHA03265	402	envelope glycoprotein D; Provisional	86.59
PF01299	306	Lamp: Lysosome-associated membrane glycoprotein (L	86.4
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	86.06
PF08374	221	Protocadherin: Protocadherin; InterPro: IPR013585	86.03
PF05624	49	LSR: Lipolysis stimulated receptor (LSR); InterPro	85.67
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	84.78
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	84.34
KOG4341	483	consensus F-box protein containing LRR [General fu	83.47
PF06365	202	CD34_antigen: CD34/Podocalyxin family; InterPro: I	83.16
PF12191	129	stn_TNFRSF12A: Tumour necrosis factor receptor stn	81.37

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.92  E-value=3e-24  Score=188.42  Aligned_cols=160  Identities=43%  Similarity=0.669  Sum_probs=137.9

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +|+.|++++|.+.+..|..+ ...+|+.|++++|++.+..|..+.++++|+.|++++|.+.+..|+.+..+++|+.|+++
T Consensus       453 ~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  531 (968)
T PLN00113        453 SLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLS  531 (968)
T ss_pred             CCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECC
Confidence            45666666666665555543 35677888888888888888888899999999999999998999999999999999999


Q ss_pred             CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCCCCCCC
Q 048618           82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGV  161 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~~c~~~  161 (207)
                      +|.+++..|..+..+++|+.|++++|.+++..|..+..+++|+.+++++|++.+.+|....+..+....+.+|+.+|+..
T Consensus       532 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        532 HNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             CCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            99999999999999999999999999999999999999999999999999999999988877778888889999999865


Q ss_pred             C
Q 048618          162 K  162 (207)
Q Consensus       162 ~  162 (207)
                      +
T Consensus       612 ~  612 (968)
T PLN00113        612 T  612 (968)
T ss_pred             c
Confidence            3

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.82  E-value=1.9e-19  Score=158.34  Aligned_cols=157  Identities=34%  Similarity=0.517  Sum_probs=118.4

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcC-----------------------CCCCCeeeccC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGS-----------------------LLKLHYLSLSN   58 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-----------------------l~~L~~L~l~~   58 (207)
                      +|+.|++++|.+++..|..+.+++.|+.|++++|.+.+.++..+..                       .++|+.|++++
T Consensus       405 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~  484 (968)
T PLN00113        405 SLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSR  484 (968)
T ss_pred             CCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcC
Confidence            4555666666665555555555555555555555555444443333                       35566677777


Q ss_pred             CcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCC
Q 048618           59 NQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVP  138 (207)
Q Consensus        59 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  138 (207)
                      |++.+..|..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..|
T Consensus       485 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  564 (968)
T PLN00113        485 NQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP  564 (968)
T ss_pred             CccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCC
Confidence            77777778888888899999999999988889999999999999999999999999999999999999999999998777


Q ss_pred             CC-cccCCCCcccccCCCCCC
Q 048618          139 NS-TAFRNAPVEALEGNKELC  158 (207)
Q Consensus       139 ~~-~~~~~~~~~~~~~n~~~c  158 (207)
                      .. ..+..+..+++.+|...+
T Consensus       565 ~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        565 KNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             hhHhcCcccCEEeccCCccee
Confidence            65 556677888888877554

>PLN03150 hypothetical protein; Provisional

Probab=99.72  E-value=1.1e-16  Score=134.09  Aligned_cols=117  Identities=29%  Similarity=0.537  Sum_probs=92.0

Q ss_pred             CCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCC
Q 048618           51 LHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISD  130 (207)
Q Consensus        51 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~  130 (207)
                      ++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|.+++.+|+.+..+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            66788888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CcCcccCCCCcc--cCCCCcccccCCCCCCCCCCCCCCCc
Q 048618          131 NQLQGPVPNSTA--FRNAPVEALEGNKELCGGVKGMQPCK  168 (207)
Q Consensus       131 n~~~~~~~~~~~--~~~~~~~~~~~n~~~c~~~~~~~~~~  168 (207)
                      |++++.+|....  ...+....+.+|..+|+.+ ....|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p-~l~~C~  538 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP-GLRACG  538 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCC-CCCCCc
Confidence            888888776522  2334556778888888743 345564

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.71  E-value=1e-18  Score=139.38  Aligned_cols=160  Identities=27%  Similarity=0.278  Sum_probs=127.2

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +|+.|+|++|.|..+.+++..-.+.|++|+|++|+|+...+..|..+..|++|+|+.|.+...-...|..+.+|+.|+|+
T Consensus       294 ~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr  373 (873)
T KOG4194|consen  294 SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLR  373 (873)
T ss_pred             hhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCc
Confidence            56778888888887777777777888888888888887777778888888888888888877667778888888888888


Q ss_pred             CCCCCCchh---HHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCCCC
Q 048618           82 HNFLGGELL---SQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELC  158 (207)
Q Consensus        82 ~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~~c  158 (207)
                      +|.+.+.+.   ..|.++++|+.|++.+|++......+|.++.+|++||+.+|.+-..-+..+.-..++.+.+.....+|
T Consensus       374 ~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflC  453 (873)
T KOG4194|consen  374 SNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLC  453 (873)
T ss_pred             CCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEE
Confidence            888766433   45667888888889898888777788889999999999999888777777655577777778888888


Q ss_pred             CCC
Q 048618          159 GGV  161 (207)
Q Consensus       159 ~~~  161 (207)
                      ++.
T Consensus       454 DCq  456 (873)
T KOG4194|consen  454 DCQ  456 (873)
T ss_pred             ecc
Confidence            753

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.68  E-value=1.9e-17  Score=132.30  Aligned_cols=153  Identities=25%  Similarity=0.254  Sum_probs=96.6

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCC--------
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLV--------   73 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--------   73 (207)
                      ++++|+|++|+|+..-...|.++.+|..|.|++|+++...+..|.++++|+.|+|..|.+.-.---.|++++        
T Consensus       174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklq  253 (873)
T KOG4194|consen  174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQ  253 (873)
T ss_pred             CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhh
Confidence            578888888888888888888888888888888888877777888888888888888876432223344444        


Q ss_pred             ----------------CCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccC
Q 048618           74 ----------------QLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPV  137 (207)
Q Consensus        74 ----------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~  137 (207)
                                      .+++|+|+.|+++..-.+.+.+++.|+.|+|++|.|....++.|...++|++|++++|.++...
T Consensus       254 rN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~  333 (873)
T KOG4194|consen  254 RNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLD  333 (873)
T ss_pred             hcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCC
Confidence                            4555555555544333344445555555555555555555555655666666666666665544


Q ss_pred             CCC-cccCCCCcccccCC
Q 048618          138 PNS-TAFRNAPVEALEGN  154 (207)
Q Consensus       138 ~~~-~~~~~~~~~~~~~n  154 (207)
                      +.. ..+..+..+.++.|
T Consensus       334 ~~sf~~L~~Le~LnLs~N  351 (873)
T KOG4194|consen  334 EGSFRVLSQLEELNLSHN  351 (873)
T ss_pred             hhHHHHHHHhhhhccccc
Confidence            443 33344444444444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.67  E-value=5.9e-19  Score=121.06  Aligned_cols=135  Identities=30%  Similarity=0.453  Sum_probs=83.2

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCC-ccchhhhCCCCCCEEec
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQ-ELPKELEKLVQLSELDL   80 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l   80 (207)
                      +|+.|++.+|.|+ ++|.++..++.|+.|++..|++. ..|..|+.++.|+.||+++|++.. .+|+.|.-++.|+.|++
T Consensus        57 nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl  134 (264)
T KOG0617|consen   57 NLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYL  134 (264)
T ss_pred             hhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHh
Confidence            4455555555555 45555555666666665555554 555666666666666666666543 35555555666666666


Q ss_pred             CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC
Q 048618           81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS  140 (207)
Q Consensus        81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~  140 (207)
                      ++|.+. ..|..++.+++|+.|.+++|.+- .+|..++.+..|++|.+.+|.++-..|..
T Consensus       135 ~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel  192 (264)
T KOG0617|consen  135 GDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPEL  192 (264)
T ss_pred             cCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhh
Confidence            666665 55666667777777777777665 55666777777777777777776544443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.63  E-value=1.2e-16  Score=122.25  Aligned_cols=159  Identities=26%  Similarity=0.336  Sum_probs=127.4

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccC-CcCC------------------
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSN-NQFV------------------   62 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~------------------   62 (207)
                      +...+.|..|.|+.+.+++|+.+++|+.|+|++|.|+.+-|++|.++.++..|-+-+ |+|+                  
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            346688888999888888889999999999999998888888887776665554433 4322                  


Q ss_pred             --------------------------------------------------------------------------------
Q 048618           63 --------------------------------------------------------------------------------   62 (207)
Q Consensus        63 --------------------------------------------------------------------------------   62 (207)
                                                                                                      
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~  227 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS  227 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence                                                                                            


Q ss_pred             -----------------------------------Cccc-hhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCC
Q 048618           63 -----------------------------------QELP-KELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSH  106 (207)
Q Consensus        63 -----------------------------------~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  106 (207)
                                                         ...| .-|..+++|+.+++++|++++..+..|.+...++.|.|..
T Consensus       228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~  307 (498)
T KOG4237|consen  228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR  307 (498)
T ss_pred             hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence                                               0111 1367788999999999999988889999999999999999


Q ss_pred             CcCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccccCCCCCCCC
Q 048618          107 NNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGNKELCGG  160 (207)
Q Consensus       107 n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~n~~~c~~  160 (207)
                      |++......+|.++.+|++|++.+|++++..|.. .....+..+.+-+|++.|.+
T Consensus       308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC  362 (498)
T KOG4237|consen  308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC  362 (498)
T ss_pred             chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc
Confidence            9998777788999999999999999999888876 44566777788899998874

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.63  E-value=3e-18  Score=117.61  Aligned_cols=151  Identities=29%  Similarity=0.440  Sum_probs=128.4

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +++.|.|++|.++ ..|+.+..+.+|+.|++.+|++. ..|.++.++++|+.|++.-|.+. ..|..|+.++.|+.|+++
T Consensus        34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt  110 (264)
T KOG0617|consen   34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT  110 (264)
T ss_pred             hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence            4677899999999 67778999999999999999998 78889999999999999999874 789999999999999999


Q ss_pred             CCCCCC-chhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCC
Q 048618           82 HNFLGG-ELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKE  156 (207)
Q Consensus        82 ~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~  156 (207)
                      +|++.. ..|+.|..+..|+.|+|++|.+. .+|..++.+++|+.|.+++|.+-......+.+..+..+.+.+|..
T Consensus       111 ynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  111 YNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             ccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccccee
Confidence            999865 47788888899999999999998 677789999999999999998875544445566666666666653

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.51  E-value=2.2e-15  Score=121.92  Aligned_cols=149  Identities=29%  Similarity=0.409  Sum_probs=84.3

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      .|+.|||++|.++ +.|..+....++-.|+|++|+|..+...-|.+++.|-.||++.|.+.. +|....++..|++|.|+
T Consensus       104 dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls  181 (1255)
T KOG0444|consen  104 DLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLS  181 (1255)
T ss_pred             cceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcC
Confidence            3566667777666 666666666666666666666664444445566666666666666643 33334455555555555


Q ss_pred             CCCCCC-------------------------chhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCccc
Q 048618           82 HNFLGG-------------------------ELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGP  136 (207)
Q Consensus        82 ~n~l~~-------------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~  136 (207)
                      +|.+..                         .+|..+..+.+|..+|++.|.+. ..|+++..+++|+.|++++|+++..
T Consensus       182 ~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL  260 (1255)
T KOG0444|consen  182 NNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITEL  260 (1255)
T ss_pred             CChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeee
Confidence            553311                         23444444555566666666665 5666666666666666666666543


Q ss_pred             CCCCcccCCCCcccccC
Q 048618          137 VPNSTAFRNAPVEALEG  153 (207)
Q Consensus       137 ~~~~~~~~~~~~~~~~~  153 (207)
                      -.....+..+..+.++.
T Consensus       261 ~~~~~~W~~lEtLNlSr  277 (1255)
T KOG0444|consen  261 NMTEGEWENLETLNLSR  277 (1255)
T ss_pred             eccHHHHhhhhhhcccc
Confidence            33333333333333333

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.50  E-value=2e-15  Score=122.10  Aligned_cols=155  Identities=26%  Similarity=0.305  Sum_probs=115.0

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCC-------------------
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFV-------------------   62 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-------------------   62 (207)
                      ++-.|+|++|.|..+..+.|.++..|-+|+|++|++. ..|+....+..||+|++++|.+.                   
T Consensus       127 n~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms  205 (1255)
T KOG0444|consen  127 NSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMS  205 (1255)
T ss_pred             CcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcc
Confidence            5567888888888666667778888888888888886 55666677777777777777532                   


Q ss_pred             ------CccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCccc
Q 048618           63 ------QELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGP  136 (207)
Q Consensus        63 ------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~  136 (207)
                            .-+|..+..+.+|..++++.|++. ..|+.+..+.+|+.|+|++|.++ .+......+.+|++|+++.|+++..
T Consensus       206 ~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~L  283 (1255)
T KOG0444|consen  206 NTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTVL  283 (1255)
T ss_pred             cccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhccc
Confidence                  124556667778999999999997 78999999999999999999998 5566677788899999999998755


Q ss_pred             CCCCcccCCCCcccccCCCCCCC
Q 048618          137 VPNSTAFRNAPVEALEGNKELCG  159 (207)
Q Consensus       137 ~~~~~~~~~~~~~~~~~n~~~c~  159 (207)
                      ......+..+..+...+|...-.
T Consensus       284 P~avcKL~kL~kLy~n~NkL~Fe  306 (1255)
T KOG0444|consen  284 PDAVCKLTKLTKLYANNNKLTFE  306 (1255)
T ss_pred             hHHHhhhHHHHHHHhccCccccc
Confidence            44445555555555555544333

>PLN03150 hypothetical protein; Provisional

Probab=99.48  E-value=2.2e-13  Score=114.39  Aligned_cols=113  Identities=27%  Similarity=0.432  Sum_probs=103.6

Q ss_pred             CCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCC
Q 048618           26 ELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLS  105 (207)
Q Consensus        26 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  105 (207)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCccccccCC-CCCCEEECCCCcCcccCC
Q 048618          106 HNNLSGSIPNCFEGM-HGLSVIDISDNQLQGPVP  138 (207)
Q Consensus       106 ~n~l~~~~~~~~~~~-~~L~~l~l~~n~~~~~~~  138 (207)
                      +|.+++.+|..+... .++..+++.+|+..|..|
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            999999999888764 467789999998776544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.46  E-value=4.2e-14  Score=108.48  Aligned_cols=95  Identities=24%  Similarity=0.302  Sum_probs=85.4

Q ss_pred             hcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCC
Q 048618           45 LGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLS  124 (207)
Q Consensus        45 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~  124 (207)
                      |..+++|++|++++|+++.+-+.+|.++..+++|.|..|++.......|.++..|++|+|.+|+|+...|..|..+.+|.
T Consensus       270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~  349 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS  349 (498)
T ss_pred             HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence            56678999999999999988889999999999999999999877778899999999999999999988899999999999


Q ss_pred             EEECCCCcCcccCCC
Q 048618          125 VIDISDNQLQGPVPN  139 (207)
Q Consensus       125 ~l~l~~n~~~~~~~~  139 (207)
                      ++.+-.|++.|.+.-
T Consensus       350 ~l~l~~Np~~CnC~l  364 (498)
T KOG4237|consen  350 TLNLLSNPFNCNCRL  364 (498)
T ss_pred             eeehccCcccCccch
Confidence            999999999776644

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.46  E-value=7.9e-14  Score=98.18  Aligned_cols=112  Identities=29%  Similarity=0.350  Sum_probs=38.1

Q ss_pred             cCCCCCCCEeeCcCCCCCCCcchhhc-CCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCC
Q 048618           21 IGSFKELEYLDLSANRFNNSVPKSLG-SLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESL   99 (207)
Q Consensus        21 ~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L   99 (207)
                      +.+...+++|+|++|.|+. +. .+. .+.+|+.|++++|.+...  +.+..++.|++|++++|+++...+.....+++|
T Consensus        15 ~~n~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L   90 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNL   90 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred             ccccccccccccccccccc-cc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence            4455667888888888874 32 343 467788888888887653  346677888888888888875433323457788


Q ss_pred             CEEeCCCCcCCCCc-cccccCCCCCCEEECCCCcCccc
Q 048618          100 EKLNLSHNNLSGSI-PNCFEGMHGLSVIDISDNQLQGP  136 (207)
Q Consensus       100 ~~L~l~~n~l~~~~-~~~~~~~~~L~~l~l~~n~~~~~  136 (207)
                      +.|++++|.+.... -..+..+++|+.|++.+||++..
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~  128 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK  128 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence            88888888886532 24566778888888888888643

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.39  E-value=9.2e-13  Score=92.80  Aligned_cols=123  Identities=31%  Similarity=0.364  Sum_probs=53.8

Q ss_pred             CccEEECCCCCCcccCCcccC-CCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            2 SLTKLILRGNQLTGRLPTEIG-SFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      ++++|+|++|.|+.+  +.+. .+.+|+.|++++|.|... + .+..+++|+.|++++|.++...+.....+++|++|++
T Consensus        20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL   95 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred             ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence            468899999999954  3354 578999999999999854 3 5888999999999999998654433356899999999


Q ss_pred             CCCCCCCc-hhHHhhcCCCCCEEeCCCCcCCCCc---cccccCCCCCCEEEC
Q 048618           81 SHNFLGGE-LLSQICNMESLEKLNLSHNNLSGSI---PNCFEGMHGLSVIDI  128 (207)
Q Consensus        81 ~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~~~L~~l~l  128 (207)
                      ++|++... ....+..+++|+.|++.+|+++...   ...+..+|+|+.||-
T Consensus        96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            99999753 2356678999999999999998541   235678899997765

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.37  E-value=6.4e-14  Score=117.24  Aligned_cols=129  Identities=31%  Similarity=0.358  Sum_probs=77.0

Q ss_pred             CCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeC
Q 048618           25 KELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNL  104 (207)
Q Consensus        25 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  104 (207)
                      +.|+.|.+.+|.+++..-+.+.++.+|+.|+|++|++.......+.++..|++|+|++|+++ .+|..+..+..|++|..
T Consensus       359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~a  437 (1081)
T KOG0618|consen  359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRA  437 (1081)
T ss_pred             HHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhh
Confidence            44555666666666665556666666666666666665444444566666666666666666 45566666666666666


Q ss_pred             CCCcCCCCccccccCCCCCCEEECCCCcCcccC-CCCcccCCCCcccccCCCC
Q 048618          105 SHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPV-PNSTAFRNAPVEALEGNKE  156 (207)
Q Consensus       105 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~~~~~~~~~n~~  156 (207)
                      .+|.+. ..| .+..++.|+.+|++.|.++-.. +.....+.+..+++.||..
T Consensus       438 hsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  438 HSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             cCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence            666665 344 4556666666666666665322 2222225566666666653

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.35  E-value=1.2e-13  Score=106.40  Aligned_cols=114  Identities=36%  Similarity=0.568  Sum_probs=53.4

Q ss_pred             CcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCC
Q 048618           18 PTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNME   97 (207)
Q Consensus        18 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~   97 (207)
                      |..++.+++|..|+|++|.+. .+|..+..+..||.|+++.|.+. ..|+-...+..++.+-.++|++....++.+..+.
T Consensus       428 ~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~  505 (565)
T KOG0472|consen  428 PLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMR  505 (565)
T ss_pred             hHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhh
Confidence            333344444444444444443 33444444444444444444432 3343333333344444444444444444455555


Q ss_pred             CCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCc
Q 048618           98 SLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQ  134 (207)
Q Consensus        98 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~  134 (207)
                      +|.+|||.+|.+. .+|..++.+.+|++|++.+|+|.
T Consensus       506 nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  506 NLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            5555555555554 44445555555555555555554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.32  E-value=2e-12  Score=100.42  Aligned_cols=133  Identities=28%  Similarity=0.357  Sum_probs=65.2

Q ss_pred             CccEEECCCCCCcccCCcccCCCCC---CCEeeCcCCCCCC----CcchhhcCC-CCCCeeeccCCcCCCc----cchhh
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKE---LEYLDLSANRFNN----SVPKSLGSL-LKLHYLSLSNNQFVQE----LPKEL   69 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~---L~~L~L~~n~i~~----~~~~~~~~l-~~L~~L~l~~n~l~~~----~~~~~   69 (207)
                      +|+.|++++|.+.+..+..+..+..   |++|++++|.+++    .+...+..+ ++|+.|++++|.+++.    .+..+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            4555566655555444444433333   5666666555542    112223344 5556666666655421    22334


Q ss_pred             hCCCCCCEEecCCCCCCCch----hHHhhcCCCCCEEeCCCCcCCCC----ccccccCCCCCCEEECCCCcCc
Q 048618           70 EKLVQLSELDLSHNFLGGEL----LSQICNMESLEKLNLSHNNLSGS----IPNCFEGMHGLSVIDISDNQLQ  134 (207)
Q Consensus        70 ~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~l~l~~n~~~  134 (207)
                      ..+.+|++|++++|.+++..    +..+...++|+.|++++|.+++.    +...+..+++|+.|++++|+++
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence            44455666666666555321    12233344566666666655432    2233444555666666666554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.29  E-value=2.5e-13  Score=104.72  Aligned_cols=151  Identities=34%  Similarity=0.456  Sum_probs=126.5

Q ss_pred             ccEEECCCCCCcccCCcccCCCCCCCEe-eCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            3 LTKLILRGNQLTGRLPTEIGSFKELEYL-DLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         3 L~~L~l~~n~i~~~~~~~~~~l~~L~~L-~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      ++..+++.|++. ++|..+..+..+++. .+++|.++ .+|..++.+++|..|++++|-+ ..+|..++.+..|+.++++
T Consensus       390 Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~L-n~LP~e~~~lv~Lq~LnlS  466 (565)
T KOG0472|consen  390 VTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLL-NDLPEEMGSLVRLQTLNLS  466 (565)
T ss_pred             eEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchh-hhcchhhhhhhhhheeccc
Confidence            456788888888 777777666666554 45555554 7888889999999999998876 4678888899999999999


Q ss_pred             CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCCC
Q 048618           82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKEL  157 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~~  157 (207)
                      +|++. ..|.....+..++.+-.++|++....++-++.+.+|.+||+.+|.+....|..+.+.++..+.+.||++-
T Consensus       467 ~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  467 FNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence            99887 7888888888888888888999866677799999999999999999999998899999999999999864

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.28  E-value=2.9e-12  Score=99.55  Aligned_cols=154  Identities=29%  Similarity=0.329  Sum_probs=95.0

Q ss_pred             CccEEECCCCCCcc------cCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCC---CCeeeccCCcCCC----ccchh
Q 048618            2 SLTKLILRGNQLTG------RLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLK---LHYLSLSNNQFVQ----ELPKE   68 (207)
Q Consensus         2 ~L~~L~l~~n~i~~------~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~---L~~L~l~~n~l~~----~~~~~   68 (207)
                      +++.++++++.+.+      .++..+..+++|+.|++++|.+....+..+..+.+   |+.|++++|++..    .+...
T Consensus        52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~  131 (319)
T cd00116          52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG  131 (319)
T ss_pred             CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH
Confidence            46777777776652      23345566778888888887776555555555554   8888888877753    22334


Q ss_pred             hhCC-CCCCEEecCCCCCCCch----hHHhhcCCCCCEEeCCCCcCCCC----ccccccCCCCCCEEECCCCcCcccCCC
Q 048618           69 LEKL-VQLSELDLSHNFLGGEL----LSQICNMESLEKLNLSHNNLSGS----IPNCFEGMHGLSVIDISDNQLQGPVPN  139 (207)
Q Consensus        69 ~~~l-~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~l~l~~n~~~~~~~~  139 (207)
                      +..+ ++|+.+++++|.+++..    +..+..+.+|++|++++|.+++.    ++..+...++|+.|++++|.+++....
T Consensus       132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  211 (319)
T cd00116         132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS  211 (319)
T ss_pred             HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH
Confidence            4555 77788888888776432    23344556788888888877642    233344556788888888877532211


Q ss_pred             -----CcccCCCCcccccCCC
Q 048618          140 -----STAFRNAPVEALEGNK  155 (207)
Q Consensus       140 -----~~~~~~~~~~~~~~n~  155 (207)
                           ....+.+..+++.+|.
T Consensus       212 ~l~~~~~~~~~L~~L~ls~n~  232 (319)
T cd00116         212 ALAETLASLKSLEVLNLGDNN  232 (319)
T ss_pred             HHHHHhcccCCCCEEecCCCc
Confidence                 1234556666666554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.28  E-value=5.2e-13  Score=111.92  Aligned_cols=128  Identities=32%  Similarity=0.358  Sum_probs=103.6

Q ss_pred             ccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCC
Q 048618            3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSH   82 (207)
Q Consensus         3 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   82 (207)
                      |+.|.+.+|.+++..-+.+.++.+|+.|+|++|++.......+.++..|+.|++++|++. .+|.....+..|++|...+
T Consensus       361 Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahs  439 (1081)
T KOG0618|consen  361 LQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHS  439 (1081)
T ss_pred             HHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcC
Confidence            567888899999888888889999999999999998666677888999999999999986 5668888888899999988


Q ss_pred             CCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcC
Q 048618           83 NFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQL  133 (207)
Q Consensus        83 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~  133 (207)
                      |.+. ..| .+..++.|+.+|++.|.++...-......++|+.||+++|..
T Consensus       440 N~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  440 NQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             Ccee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence            8887 556 778888999999999988753222223347899999999874

>PLN03210 Resistant to P

Probab=99.27  E-value=6.2e-11  Score=106.14  Aligned_cols=55  Identities=20%  Similarity=0.267  Sum_probs=29.8

Q ss_pred             CCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCccccc
Q 048618           98 SLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALE  152 (207)
Q Consensus        98 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~  152 (207)
                      +|+.|++++|.....+|..+..+++|+.|++++|..-..+|....+..+..+.+.
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls  833 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLS  833 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECC
Confidence            4555555555544456666667777777777776543344433333344444443

syringae 6; Provisional

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.23  E-value=1.4e-12  Score=97.45  Aligned_cols=132  Identities=30%  Similarity=0.348  Sum_probs=107.0

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      .|+++||++|.|+ .+.++..-++.++.|++++|.|...  +.++.+++|+.||+++|.++. +.+.-..+.++++|.|+
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehh
Confidence            4788999999999 7888889999999999999999844  338889999999999998863 33444567889999999


Q ss_pred             CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCc-cccccCCCCCCEEECCCCcCcccCCC
Q 048618           82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSI-PNCFEGMHGLSVIDISDNQLQGPVPN  139 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~  139 (207)
                      .|.+.+  ...+..+.+|..||+++|+|.... ...++.+|-|+++.+.+|++.+...-
T Consensus       361 ~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY  417 (490)
T KOG1259|consen  361 QNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY  417 (490)
T ss_pred             hhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence            998853  345667888999999999997432 24678888899999999999765443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.22  E-value=8.5e-12  Score=72.94  Aligned_cols=60  Identities=38%  Similarity=0.543  Sum_probs=35.1

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCc
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ   60 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~   60 (207)
                      ++|++|++++|.++...+..|.++++|++|++++|.+....+..|.++++|+.|++++|+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            355666666666665555555666666666666666655555555566666666665554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.19  E-value=9.4e-12  Score=72.77  Aligned_cols=61  Identities=41%  Similarity=0.534  Sum_probs=43.1

Q ss_pred             CCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCC
Q 048618           25 KELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFL   85 (207)
Q Consensus        25 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l   85 (207)
                      ++|++|++++|++....+..|.++++|+.|++++|.+....++.|.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4567777777777765556677777777777777777666666777777777777777754

...

>PLN03210 Resistant to P

Probab=99.17  E-value=2.2e-10  Score=102.70  Aligned_cols=126  Identities=25%  Similarity=0.304  Sum_probs=97.3

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +|+.|++++|...+.+|..+.++++|+.|++++|...+.+|... ++++|+.|++++|......|..   ..+++.|+++
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls  854 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLS  854 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECC
Confidence            57888888887777888888899999999998876555666555 6888999999887655555543   3578889999


Q ss_pred             CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCc
Q 048618           82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQ  132 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~  132 (207)
                      +|.+. ..|..+..+++|+.|++++|.--..+|..+..+++|+.+++++|.
T Consensus       855 ~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        855 RTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            99887 567788889999999998854333566667778888888888774

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.12  E-value=2.9e-10  Score=96.90  Aligned_cols=97  Identities=32%  Similarity=0.484  Sum_probs=52.7

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +++.|++++|.++ .+|..+.  .+|++|++++|++. .+|..+.  ..|+.|++++|++. .+|..+.  .+|+.|+++
T Consensus       200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls  270 (754)
T PRK15370        200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLF  270 (754)
T ss_pred             CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECc
Confidence            4566666666666 3444332  36666666666665 3444332  25666666666654 3343332  256666666


Q ss_pred             CCCCCCchhHHhhcCCCCCEEeCCCCcCC
Q 048618           82 HNFLGGELLSQICNMESLEKLNLSHNNLS  110 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  110 (207)
                      +|++. .+|..+.  .+|+.|++++|.++
T Consensus       271 ~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt  296 (754)
T PRK15370        271 HNKIS-CLPENLP--EELRYLSVYDNSIR  296 (754)
T ss_pred             CCccC-ccccccC--CCCcEEECCCCccc
Confidence            66665 2343332  35666666666655

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.12  E-value=2e-10  Score=97.83  Aligned_cols=140  Identities=25%  Similarity=0.369  Sum_probs=85.5

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +|+.|++++|.++ .+|..+.  .+|+.|++++|.+. .+|..+.  .+|+.|++++|++.. +|..+.  .+|+.|+++
T Consensus       221 nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls  291 (754)
T PRK15370        221 NIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVY  291 (754)
T ss_pred             CCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECC
Confidence            6788888888887 4565443  46888888888877 5555553  367788888777763 444332  367777777


Q ss_pred             CCCCCCchhHHhh-------------------cCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcc
Q 048618           82 HNFLGGELLSQIC-------------------NMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTA  142 (207)
Q Consensus        82 ~n~l~~~~~~~~~-------------------~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~  142 (207)
                      +|+++.. |..+.                   ..++|+.|++++|.+++ +|..+.  ++|+.|++++|+++. +|.. .
T Consensus       292 ~N~Lt~L-P~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-LP~~-l  365 (754)
T PRK15370        292 DNSIRTL-PAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-LPET-L  365 (754)
T ss_pred             CCccccC-cccchhhHHHHHhcCCccccCCccccccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-CChh-h
Confidence            7777632 22111                   11356666666666653 343332  577888888887763 3322 1


Q ss_pred             cCCCCcccccCCCC
Q 048618          143 FRNAPVEALEGNKE  156 (207)
Q Consensus       143 ~~~~~~~~~~~n~~  156 (207)
                      ...+..+++.+|..
T Consensus       366 p~~L~~LdLs~N~L  379 (754)
T PRK15370        366 PPTITTLDVSRNAL  379 (754)
T ss_pred             cCCcCEEECCCCcC
Confidence            24566666666643

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.10  E-value=1.8e-10  Score=98.00  Aligned_cols=128  Identities=26%  Similarity=0.327  Sum_probs=71.2

Q ss_pred             CccEEECCCCCCccc--CCcccCC--------------CCCCCEeeCcCCCCCCCcchhhcC-----------------C
Q 048618            2 SLTKLILRGNQLTGR--LPTEIGS--------------FKELEYLDLSANRFNNSVPKSLGS-----------------L   48 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~--~~~~~~~--------------l~~L~~L~L~~n~i~~~~~~~~~~-----------------l   48 (207)
                      +|+.|++++|.+++.  .|..+..              ..+|+.|++++|++.+ +|....+                 .
T Consensus       303 ~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~~LP~l~  381 (788)
T PRK15387        303 GLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALP  381 (788)
T ss_pred             ccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCC-CCCCCcccceehhhccccccCcccc
Confidence            566777777766642  1111111              1367778888887774 3321111                 1


Q ss_pred             CCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEEC
Q 048618           49 LKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDI  128 (207)
Q Consensus        49 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l  128 (207)
                      .+|+.|++++|.+.. +|..   ..+|+.|++++|.++. +|..   ..+|+.|++++|.++ .+|+.+..+++|+.+++
T Consensus       382 ~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL  452 (788)
T PRK15387        382 SGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  452 (788)
T ss_pred             cccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence            235555555555543 2221   2346666666666653 3332   234566777777776 55666777777778888


Q ss_pred             CCCcCcccCCC
Q 048618          129 SDNQLQGPVPN  139 (207)
Q Consensus       129 ~~n~~~~~~~~  139 (207)
                      ++|++++..+.
T Consensus       453 s~N~Ls~~~~~  463 (788)
T PRK15387        453 EGNPLSERTLQ  463 (788)
T ss_pred             CCCCCCchHHH
Confidence            88877765443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.03  E-value=6.3e-12  Score=100.74  Aligned_cols=108  Identities=33%  Similarity=0.585  Sum_probs=70.1

Q ss_pred             CCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCC
Q 048618           27 LEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSH  106 (207)
Q Consensus        27 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  106 (207)
                      |+.|.+++|++. .+|..++.+.+|..||.++|++. .+|..+..+.+|+.|++..|.+. ..|..+..+ .|..||++.
T Consensus       145 Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfSc  220 (722)
T KOG0532|consen  145 LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSC  220 (722)
T ss_pred             ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeeccc
Confidence            344444444443 33444444455555555666553 34445555666666666666665 445556654 478899999


Q ss_pred             CcCCCCccccccCCCCCCEEECCCCcCcccCCC
Q 048618          107 NNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPN  139 (207)
Q Consensus       107 n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  139 (207)
                      |+++ .+|-+|..+..|+.|.|.+|+++.....
T Consensus       221 Nkis-~iPv~fr~m~~Lq~l~LenNPLqSPPAq  252 (722)
T KOG0532|consen  221 NKIS-YLPVDFRKMRHLQVLQLENNPLQSPPAQ  252 (722)
T ss_pred             Ccee-ecchhhhhhhhheeeeeccCCCCCChHH
Confidence            9998 7788999999999999999999855443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.03  E-value=8.1e-10  Score=94.03  Aligned_cols=142  Identities=32%  Similarity=0.333  Sum_probs=77.4

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcch---hhc-------------CC-CCCCeeeccCCcCCCc
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPK---SLG-------------SL-LKLHYLSLSNNQFVQE   64 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~---~~~-------------~l-~~L~~L~l~~n~l~~~   64 (207)
                      +|+.|++++|.++ .+|..   .++|+.|++++|++.+. |.   .+.             .+ .+|+.|++++|++.. 
T Consensus       283 ~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~L-p~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~-  356 (788)
T PRK15387        283 GLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASL-PALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS-  356 (788)
T ss_pred             hcCEEECcCCccc-ccccc---ccccceeECCCCccccC-CCCcccccccccccCccccccccccccceEecCCCccCC-
Confidence            5678889999888 45542   47899999999998853 22   111             11 268888888888865 


Q ss_pred             cchhhhCCCCCCEEecCCCCCCCchhHHhh-----------------cCCCCCEEeCCCCcCCCCccccccCCCCCCEEE
Q 048618           65 LPKELEKLVQLSELDLSHNFLGGELLSQIC-----------------NMESLEKLNLSHNNLSGSIPNCFEGMHGLSVID  127 (207)
Q Consensus        65 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----------------~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~  127 (207)
                      +|...   .+|+.|++++|.+.. +|....                 ...+|+.|++++|.+++ +|..   ..+|+.|+
T Consensus       357 LP~lp---~~L~~L~Ls~N~L~~-LP~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~  428 (788)
T PRK15387        357 LPTLP---SELYKLWAYNNRLTS-LPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTS-LPML---PSGLLSLS  428 (788)
T ss_pred             CCCCC---cccceehhhcccccc-CcccccccceEEecCCcccCCCCcccCCCEEEccCCcCCC-CCcc---hhhhhhhh
Confidence            33221   234444444444442 222110                 11344445555554442 2321   12345556


Q ss_pred             CCCCcCcccCCCCcccCCCCcccccCCCCC
Q 048618          128 ISDNQLQGPVPNSTAFRNAPVEALEGNKEL  157 (207)
Q Consensus       128 l~~n~~~~~~~~~~~~~~~~~~~~~~n~~~  157 (207)
                      +++|+++........+..+..+++.+|+..
T Consensus       429 Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        429 VYRNQLTRLPESLIHLSSETTVNLEGNPLS  458 (788)
T ss_pred             hccCcccccChHHhhccCCCeEECCCCCCC
Confidence            666665532222244566667777777654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.03  E-value=3.2e-11  Score=96.77  Aligned_cols=124  Identities=36%  Similarity=0.480  Sum_probs=84.8

Q ss_pred             ccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCC
Q 048618            3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSH   82 (207)
Q Consensus         3 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   82 (207)
                      |+.|.+++|+++ .+|..++.+.+|..|+.+.|.+. ..|..++++.+|+.|.++.|++.. +|+.+..| .|..||++.
T Consensus       145 Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~L-pLi~lDfSc  220 (722)
T KOG0532|consen  145 LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSL-PLIRLDFSC  220 (722)
T ss_pred             ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCC-ceeeeeccc
Confidence            567777777777 67777777788888888888776 566677778888888888887754 44444454 477788888


Q ss_pred             CCCCCchhHHhhcCCCCCEEeCCCCcCCCCcccc--ccCCCC-CCEEECCCCc
Q 048618           83 NFLGGELLSQICNMESLEKLNLSHNNLSGSIPNC--FEGMHG-LSVIDISDNQ  132 (207)
Q Consensus        83 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~~~~-L~~l~l~~n~  132 (207)
                      |++. .+|-.|..|..|+.|-|.+|.+. ..|..  .++..+ .++|+...++
T Consensus       221 Nkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  221 NKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             Ccee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            8887 66777788888888888888887 33332  222222 3556665554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.98  E-value=4.8e-10  Score=89.80  Aligned_cols=146  Identities=37%  Similarity=0.550  Sum_probs=70.8

Q ss_pred             ccEEECCCCCCcccCCcccCCCC-CCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            3 LTKLILRGNQLTGRLPTEIGSFK-ELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         3 L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      ++.|++.+|.++ .++.....+. +|+.|++++|.+. .++..+..++.|+.|++++|++.. .|.....++.|+.++++
T Consensus       118 l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~ls  194 (394)
T COG4886         118 LTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLS  194 (394)
T ss_pred             eeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhh-hhhhhhhhhhhhheecc
Confidence            455555555555 3333344442 5555555555554 333344555555555555555542 22222244445555555


Q ss_pred             CCCCCCchhH-----------------------HhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCC
Q 048618           82 HNFLGGELLS-----------------------QICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVP  138 (207)
Q Consensus        82 ~n~l~~~~~~-----------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  138 (207)
                      +|++. .+|.                       .+..+..+..+.+.+|.+. ..+..+..+++++.+++++|.++....
T Consensus       195 ~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~  272 (394)
T COG4886         195 GNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS  272 (394)
T ss_pred             CCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc
Confidence            55544 2222                       2233333333333344333 124455556667777777777764443


Q ss_pred             CCcccCCCCcccccCC
Q 048618          139 NSTAFRNAPVEALEGN  154 (207)
Q Consensus       139 ~~~~~~~~~~~~~~~n  154 (207)
                       ......+..+++.++
T Consensus       273 -~~~~~~l~~L~~s~n  287 (394)
T COG4886         273 -LGSLTNLRELDLSGN  287 (394)
T ss_pred             -ccccCccCEEeccCc
Confidence             444455555555554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.89  E-value=2.4e-10  Score=85.62  Aligned_cols=107  Identities=32%  Similarity=0.392  Sum_probs=89.5

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      +.++.|++++|.|+..  +.+..+++|+.|||++|.++ .+..+--.+.++++|.++.|.+..  -+.+..+.+|..|++
T Consensus       307 Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl  381 (490)
T KOG1259|consen  307 PKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDL  381 (490)
T ss_pred             cceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccc
Confidence            4689999999999944  33889999999999999998 566676778899999999999854  255778899999999


Q ss_pred             CCCCCCCc-hhHHhhcCCCCCEEeCCCCcCCCC
Q 048618           81 SHNFLGGE-LLSQICNMESLEKLNLSHNNLSGS  112 (207)
Q Consensus        81 ~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~  112 (207)
                      ++|++... ....++.++.|+++.|.+|.+.+.
T Consensus       382 ~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  382 SSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             cccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            99999743 235678899999999999999854

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.88  E-value=2.4e-09  Score=85.82  Aligned_cols=125  Identities=34%  Similarity=0.490  Sum_probs=97.4

Q ss_pred             EEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCC-CCCeeeccCCcCCCccchhhhCCCCCCEEecCCC
Q 048618            5 KLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLL-KLHYLSLSNNQFVQELPKELEKLVQLSELDLSHN   83 (207)
Q Consensus         5 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   83 (207)
                      .+.+..+.+. .....+..++.++.|++.+|.+. .++.....+. +|+.|++++|.+. ..|.....++.|+.|++++|
T Consensus        97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            4677777774 23344566789999999999998 5565666664 9999999999986 45567789999999999999


Q ss_pred             CCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCc
Q 048618           84 FLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQ  134 (207)
Q Consensus        84 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~  134 (207)
                      +++ ..+......+.|+.|++++|.++ .+|........|+.+.+++|++.
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~  222 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII  222 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce
Confidence            998 45555557889999999999998 55655555566888888888543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.78  E-value=5.3e-11  Score=98.13  Aligned_cols=128  Identities=30%  Similarity=0.322  Sum_probs=100.0

Q ss_pred             ccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchh-hhCCCCCCEEecC
Q 048618            3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKE-LEKLVQLSELDLS   81 (207)
Q Consensus         3 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~   81 (207)
                      |...+.++|.+. ....++.-++.++.|+|+.|++...  +.+..+++|++||+++|.+.. +|.. ..++ .|+.|+++
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc-~L~~L~lr  240 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGC-KLQLLNLR  240 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccchhhh-hheeeeec
Confidence            556778888887 7778888999999999999999743  378899999999999999864 4433 2333 49999999


Q ss_pred             CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCcc-ccccCCCCCCEEECCCCcCcccC
Q 048618           82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIP-NCFEGMHGLSVIDISDNQLQGPV  137 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~~  137 (207)
                      +|.++.  ...+.++.+|+.||+++|.+.+... ..+..+..|+.|.+.||++.|-.
T Consensus       241 nN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  241 NNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             ccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            998874  2456788999999999999875422 33455677899999999997653

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=2.9e-09  Score=83.24  Aligned_cols=112  Identities=24%  Similarity=0.263  Sum_probs=63.8

Q ss_pred             CCCCCEeeCcCCCCCCCcch-hhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCch-hHHhhcCCCCCE
Q 048618           24 FKELEYLDLSANRFNNSVPK-SLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGEL-LSQICNMESLEK  101 (207)
Q Consensus        24 l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~  101 (207)
                      +++|+.|.++.|.++...-. ....+|+|+.|++.+|...........-++.|++|+|++|.+.+.. ....+.++.|..
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence            45555555555555432111 1234556666666666422222222334556777888888776432 134556777888


Q ss_pred             EeCCCCcCCCC-cccc-----ccCCCCCCEEECCCCcCcc
Q 048618          102 LNLSHNNLSGS-IPNC-----FEGMHGLSVIDISDNQLQG  135 (207)
Q Consensus       102 L~l~~n~l~~~-~~~~-----~~~~~~L~~l~l~~n~~~~  135 (207)
                      |+++.+.+++. .|++     ....++|+.|++..|++..
T Consensus       276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~  315 (505)
T KOG3207|consen  276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD  315 (505)
T ss_pred             hhccccCcchhcCCCccchhhhcccccceeeecccCcccc
Confidence            88887777653 3333     3456788888888888753

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=4.9e-09  Score=81.97  Aligned_cols=150  Identities=22%  Similarity=0.167  Sum_probs=94.6

Q ss_pred             CccEEECCCCCCcccCC--cccCCCCCCCEeeCcCCCCCCCc--chhhcCCCCCCeeeccCCcCCCccchh-hhCCCCCC
Q 048618            2 SLTKLILRGNQLTGRLP--TEIGSFKELEYLDLSANRFNNSV--PKSLGSLLKLHYLSLSNNQFVQELPKE-LEKLVQLS   76 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~   76 (207)
                      +|+...|.++.+. ..+  +....|++++.|+|+.|-+....  -.....+++|+.|+++.|.+.....+. -..+..++
T Consensus       122 kL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK  200 (505)
T KOG3207|consen  122 KLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK  200 (505)
T ss_pred             hhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence            5677788888776 223  46678888889998888766321  122356888888888888875322222 12456788


Q ss_pred             EEecCCCCCCCchhH-HhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccC--CCCcccCCCCccccc
Q 048618           77 ELDLSHNFLGGELLS-QICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPV--PNSTAFRNAPVEALE  152 (207)
Q Consensus        77 ~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~--~~~~~~~~~~~~~~~  152 (207)
                      .|.++.|.+++.... ....+++|+.|+|.+|..-.........++.|+.||+++|++-...  +....++.+..+.+.
T Consensus       201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls  279 (505)
T KOG3207|consen  201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS  279 (505)
T ss_pred             eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence            888888888764433 3446788888888887532233333445567788888888775443  222444554444443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.61  E-value=1.8e-08  Score=76.74  Aligned_cols=132  Identities=28%  Similarity=0.389  Sum_probs=81.2

Q ss_pred             CccEEECCCCCCccc----CCcccCCCCCCCEeeCcCCCCCCC----cchhhcCCCCCCeeeccCCcCCCc----cchhh
Q 048618            2 SLTKLILRGNQLTGR----LPTEIGSFKELEYLDLSANRFNNS----VPKSLGSLLKLHYLSLSNNQFVQE----LPKEL   69 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~   69 (207)
                      .|+.++..+|++...    ....|+..++|+.+.+.+|.|...    ....|...++|+.|||+.|-++..    +...+
T Consensus       158 ~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL  237 (382)
T KOG1909|consen  158 KLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL  237 (382)
T ss_pred             ceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh
Confidence            566777777776633    223455667777777777766532    233456677777777777766543    33445


Q ss_pred             hCCCCCCEEecCCCCCCCchhHHhh-----cCCCCCEEeCCCCcCCCC----ccccccCCCCCCEEECCCCcC
Q 048618           70 EKLVQLSELDLSHNFLGGELLSQIC-----NMESLEKLNLSHNNLSGS----IPNCFEGMHGLSVIDISDNQL  133 (207)
Q Consensus        70 ~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~l~l~~n~~  133 (207)
                      ..+++|+.+++++|.+.......+.     ..++|+.+.+.+|.++..    +..++...+.|..|++++|.+
T Consensus       238 ~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  238 SSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            5566777777777776554333322     356777777777777632    334455566777777777776

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.57  E-value=2.2e-09  Score=71.54  Aligned_cols=104  Identities=28%  Similarity=0.469  Sum_probs=61.3

Q ss_pred             CCEeeCcCCCCCCCcchh---hcCCCCCCeeeccCCcCCCccchhhh-CCCCCCEEecCCCCCCCchhHHhhcCCCCCEE
Q 048618           27 LEYLDLSANRFNNSVPKS---LGSLLKLHYLSLSNNQFVQELPKELE-KLVQLSELDLSHNFLGGELLSQICNMESLEKL  102 (207)
Q Consensus        27 L~~L~L~~n~i~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  102 (207)
                      +-.++|++|.+. -+++.   +.....|...++++|.+. ..|..|. ..+.++.+++++|++. ..|..+..|+.|+.+
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            345566666554 23333   233445555677777664 3344443 3446677777777776 455567777777777


Q ss_pred             eCCCCcCCCCccccccCCCCCCEEECCCCcCc
Q 048618          103 NLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQ  134 (207)
Q Consensus       103 ~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~  134 (207)
                      +++.|.+. ..|..+..+.++..|+..+|...
T Consensus       106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             ccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            77777776 44555555666666666666554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.54  E-value=2.1e-07  Score=66.05  Aligned_cols=124  Identities=23%  Similarity=0.254  Sum_probs=75.6

Q ss_pred             cEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCC
Q 048618            4 TKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHN   83 (207)
Q Consensus         4 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   83 (207)
                      +.++|++..+..+.- -=........+||++|.+.. . ..|..+++|++|.+.+|.|+.+-|..-..+++|+.|.+.+|
T Consensus        22 ~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN   98 (233)
T KOG1644|consen   22 RELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN   98 (233)
T ss_pred             cccccccccccchhh-ccccccccceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence            346666666552211 11223455667777777652 2 34667777777777777777666666556677777777777


Q ss_pred             CCCCch-hHHhhcCCCCCEEeCCCCcCCCC---ccccccCCCCCCEEECCC
Q 048618           84 FLGGEL-LSQICNMESLEKLNLSHNNLSGS---IPNCFEGMHGLSVIDISD  130 (207)
Q Consensus        84 ~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~l~l~~  130 (207)
                      .+.... .+-+..+++|+.|.+-+|.++..   -.-.+..+++|+.||.+.
T Consensus        99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen   99 SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            765321 12344567777777777777632   123455677777777654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.53  E-value=1.2e-09  Score=90.42  Aligned_cols=127  Identities=31%  Similarity=0.321  Sum_probs=92.5

Q ss_pred             CCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCC
Q 048618           27 LEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSH  106 (207)
Q Consensus        27 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  106 (207)
                      |.+.+.++|.+. ....++.-++.++.|+|+.|++...  +.+..++.|++|||++|.+. ..|..-..-+.|..|.+++
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrn  241 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRN  241 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecc
Confidence            344455556655 5566677778889999999988654  37788899999999999886 4454433446689999999


Q ss_pred             CcCCCCccccccCCCCCCEEECCCCcCcccCC--CCcccCCCCcccccCCCCCCC
Q 048618          107 NNLSGSIPNCFEGMHGLSVIDISDNQLQGPVP--NSTAFRNAPVEALEGNKELCG  159 (207)
Q Consensus       107 n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~--~~~~~~~~~~~~~~~n~~~c~  159 (207)
                      |.++..  .-+.++.+|+.||+++|-+.+...  ..+.+..+..+.++||+.-|.
T Consensus       242 N~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  242 NALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             cHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            988743  225677889999999998875433  236667778888899997775

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.53  E-value=8.9e-08  Score=73.06  Aligned_cols=132  Identities=23%  Similarity=0.248  Sum_probs=72.5

Q ss_pred             CccEEECCCCCCcccCCcc----cCCCCCCCEeeCcCCCCCCCcchh-------------hcCCCCCCeeeccCCcCCCc
Q 048618            2 SLTKLILRGNQLTGRLPTE----IGSFKELEYLDLSANRFNNSVPKS-------------LGSLLKLHYLSLSNNQFVQE   64 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~----~~~l~~L~~L~L~~n~i~~~~~~~-------------~~~l~~L~~L~l~~n~l~~~   64 (207)
                      .|+.|+|++|-+....++.    +.++..|+.|.|.+|.+...-...             .++-+.|+++...+|.+...
T Consensus        93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~  172 (382)
T KOG1909|consen   93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG  172 (382)
T ss_pred             ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence            6788999999887554443    366788888888888876322211             12334566666666655422


Q ss_pred             ----cchhhhCCCCCCEEecCCCCCCCc----hhHHhhcCCCCCEEeCCCCcCCCC----ccccccCCCCCCEEECCCCc
Q 048618           65 ----LPKELEKLVQLSELDLSHNFLGGE----LLSQICNMESLEKLNLSHNNLSGS----IPNCFEGMHGLSVIDISDNQ  132 (207)
Q Consensus        65 ----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~l~l~~n~  132 (207)
                          ....|+..+.|+.+.++.|.+...    ....+..++.|+.|||++|-++..    +...+..+++|+.+++++|.
T Consensus       173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl  252 (382)
T KOG1909|consen  173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL  252 (382)
T ss_pred             cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence                223344455555555555554321    122344455555555555555422    23344445555555555554


Q ss_pred             C
Q 048618          133 L  133 (207)
Q Consensus       133 ~  133 (207)
                      +
T Consensus       253 l  253 (382)
T KOG1909|consen  253 L  253 (382)
T ss_pred             c
Confidence            4

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.47  E-value=1.1e-07  Score=82.64  Aligned_cols=103  Identities=31%  Similarity=0.379  Sum_probs=53.0

Q ss_pred             ccEEECCCCC--CcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            3 LTKLILRGNQ--LTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         3 L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      |+.|-+.+|.  +....++.|..++.|+.|||++|.-.+..|..++.+-+|++|+++++.+. .+|..+.++..|.+|++
T Consensus       547 L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl  625 (889)
T KOG4658|consen  547 LRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNL  625 (889)
T ss_pred             cceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecc
Confidence            4445555553  33233333455555555555555444455555555555555555555553 45555555555555555


Q ss_pred             CCCCCCCchhHHhhcCCCCCEEeCCC
Q 048618           81 SHNFLGGELLSQICNMESLEKLNLSH  106 (207)
Q Consensus        81 ~~n~l~~~~~~~~~~l~~L~~L~l~~  106 (207)
                      .++.-....+.....+.+|++|.+..
T Consensus       626 ~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  626 EVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             ccccccccccchhhhcccccEEEeec
Confidence            55543333344444455555555543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.45  E-value=1.6e-08  Score=67.51  Aligned_cols=132  Identities=24%  Similarity=0.277  Sum_probs=93.1

Q ss_pred             ccEEECCCCCCcccCCccc---CCCCCCCEeeCcCCCCCCCcchhh-cCCCCCCeeeccCCcCCCccchhhhCCCCCCEE
Q 048618            3 LTKLILRGNQLTGRLPTEI---GSFKELEYLDLSANRFNNSVPKSL-GSLLKLHYLSLSNNQFVQELPKELEKLVQLSEL   78 (207)
Q Consensus         3 L~~L~l~~n~i~~~~~~~~---~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   78 (207)
                      +..++|+.|.+. -++++.   .....|+..+|++|.+. ..|..| ..++.+++|+|..|.+. .+|..+..++.|+.+
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            456788888776 344443   44566677789999987 445555 44568899999999986 567779999999999


Q ss_pred             ecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCC
Q 048618           79 DLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPN  139 (207)
Q Consensus        79 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  139 (207)
                      +++.|.+. ..|..+..+.++..|+..+|.+....-+.+ .-...-..++.++++.+.++.
T Consensus       106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~dl~-~s~~~al~~lgnepl~~~~~~  164 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVDLF-YSSLPALIKLGNEPLGDETKK  164 (177)
T ss_pred             ccccCccc-cchHHHHHHHhHHHhcCCCCccccCcHHHh-ccccHHHHHhcCCcccccCcc
Confidence            99999997 667777778889999999998874433422 222223345577777665553

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.45  E-value=2.7e-08  Score=80.27  Aligned_cols=125  Identities=30%  Similarity=0.339  Sum_probs=65.1

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +++.|++.+|.|..+ ...+..+++|++|++++|.|+...  .+..++.|+.|++.+|.+...  ..+..++.|+.++++
T Consensus        96 ~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~  170 (414)
T KOG0531|consen   96 SLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLS  170 (414)
T ss_pred             ceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhhcccCC
Confidence            455666666666632 222455666666666666665432  244455566666666665432  233345566666666


Q ss_pred             CCCCCCchh-HHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCc
Q 048618           82 HNFLGGELL-SQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQ  134 (207)
Q Consensus        82 ~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~  134 (207)
                      +|.+....+ . ...+..++.+++.+|.+...  +.+.....+..+++..|.++
T Consensus       171 ~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~  221 (414)
T KOG0531|consen  171 YNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKIS  221 (414)
T ss_pred             cchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccce
Confidence            666654333 1 34556666666666665422  12222233333355555554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.45  E-value=2.6e-07  Score=80.45  Aligned_cols=127  Identities=27%  Similarity=0.329  Sum_probs=101.4

Q ss_pred             ccEEECCCCCCcccCCcccCCCCCCCEeeCcCCC--CCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANR--FNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         3 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      .+...+-+|.+. .++.+. ..+.|++|.+..|.  +.......|..++.|..||+++|.-.+.+|..++.+-+|++|++
T Consensus       525 ~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L  602 (889)
T KOG4658|consen  525 VRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL  602 (889)
T ss_pred             eeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence            345555666665 344433 34589999999986  55455555888999999999998877889999999999999999


Q ss_pred             CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCc
Q 048618           81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQ  132 (207)
Q Consensus        81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~  132 (207)
                      ++..+. ..|..+..+..|.+|++..+.-....+.....+++|+.|.+....
T Consensus       603 ~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  603 SDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             cCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            999998 789999999999999999887655567777778999999887654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.42  E-value=4.7e-08  Score=78.91  Aligned_cols=125  Identities=30%  Similarity=0.426  Sum_probs=74.2

Q ss_pred             ccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCC
Q 048618            3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSH   82 (207)
Q Consensus         3 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   82 (207)
                      ++.+.+..|.+.. .-..+..+.++..|++.+|.|. .+...+..+++|+.|++++|.|+...  .+..++.|+.|++++
T Consensus        74 l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   74 LKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSG  149 (414)
T ss_pred             HHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhheecc
Confidence            3445556666553 2334566677777777777776 33333556677777777777775542  234455577777777


Q ss_pred             CCCCCchhHHhhcCCCCCEEeCCCCcCCCCcc-ccccCCCCCCEEECCCCcCc
Q 048618           83 NFLGGELLSQICNMESLEKLNLSHNNLSGSIP-NCFEGMHGLSVIDISDNQLQ  134 (207)
Q Consensus        83 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~  134 (207)
                      |.+...  ..+..+..|+.+++++|.++...+ . ...+.+++.+++.+|.+.
T Consensus       150 N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  150 NLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             Ccchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence            776532  233446667777777777764433 1 355566666777776654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.37  E-value=3e-07  Score=49.54  Aligned_cols=37  Identities=41%  Similarity=0.604  Sum_probs=20.6

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCC
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFN   38 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~   38 (207)
                      ++|++|++++|.|+ .+|+.+.++++|++|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            35666666666666 34444566666666666666655

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.30  E-value=1.2e-06  Score=62.24  Aligned_cols=109  Identities=17%  Similarity=0.139  Sum_probs=83.3

Q ss_pred             CCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEe
Q 048618           24 FKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLN  103 (207)
Q Consensus        24 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  103 (207)
                      ...-+.++|++.++.. +..--.-+.+...+|+++|.+..  .+.|..+++|.+|.+++|+++...|..-.-+++|+.|.
T Consensus        18 ~~~e~e~~LR~lkip~-ienlg~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~   94 (233)
T KOG1644|consen   18 SVRERELDLRGLKIPV-IENLGATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLI   94 (233)
T ss_pred             hccccccccccccccc-hhhccccccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEE
Confidence            3346678888887763 22211234567899999999854  35677889999999999999987776666678899999


Q ss_pred             CCCCcCCCCc-cccccCCCCCCEEECCCCcCcc
Q 048618          104 LSHNNLSGSI-PNCFEGMHGLSVIDISDNQLQG  135 (207)
Q Consensus       104 l~~n~l~~~~-~~~~~~~~~L~~l~l~~n~~~~  135 (207)
                      |.+|.+.... -+-+..+++|+.|.+-+|+++.
T Consensus        95 LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~  127 (233)
T KOG1644|consen   95 LTNNSIQELGDLDPLASCPKLEYLTLLGNPVEH  127 (233)
T ss_pred             ecCcchhhhhhcchhccCCccceeeecCCchhc
Confidence            9999997432 3457788999999999999864

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.26  E-value=1.6e-06  Score=46.76  Aligned_cols=36  Identities=44%  Similarity=0.607  Sum_probs=17.1

Q ss_pred             CCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCC
Q 048618           26 ELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFV   62 (207)
Q Consensus        26 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~   62 (207)
                      +|++|++++|+|+ .+|..+.++++|+.|++++|.++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 33334555555555555555543

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.16  E-value=2.3e-06  Score=72.85  Aligned_cols=132  Identities=19%  Similarity=0.246  Sum_probs=94.3

Q ss_pred             CccEEECCCCCCcccCC--cccCCCCCCCEeeCcCCCCCCC-cchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEE
Q 048618            2 SLTKLILRGNQLTGRLP--TEIGSFKELEYLDLSANRFNNS-VPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSEL   78 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   78 (207)
                      +|+.|+++|...-..-+  ..-.-+|.|+.|.+.+-.+... .-.-..++++|..||++++++...  ..++++++|+.|
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L  200 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL  200 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence            67888888865432211  1224579999999988766432 223356789999999999998755  677889999999


Q ss_pred             ecCCCCCCC-chhHHhhcCCCCCEEeCCCCcCCCC------ccccccCCCCCCEEECCCCcCcc
Q 048618           79 DLSHNFLGG-ELLSQICNMESLEKLNLSHNNLSGS------IPNCFEGMHGLSVIDISDNQLQG  135 (207)
Q Consensus        79 ~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~~~~L~~l~l~~n~~~~  135 (207)
                      .+.+=.+.. ..-..+..+++|+.||++.......      .-++-..+|+|+.||.++..+..
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            888776653 3344667899999999988655422      23455568999999999887754

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=1.8e-06  Score=65.11  Aligned_cols=61  Identities=28%  Similarity=0.282  Sum_probs=34.8

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCC-CCCCc-chhhcCCCCCCeeeccCCcCC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANR-FNNSV-PKSLGSLLKLHYLSLSNNQFV   62 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i~~~~-~~~~~~l~~L~~L~l~~n~l~   62 (207)
                      +|+.|.+.|+++.+.+...+.+-.+|+.|+++.++ ++..- .--+.+++.|+.|++++|.+.
T Consensus       211 kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~  273 (419)
T KOG2120|consen  211 KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLF  273 (419)
T ss_pred             hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhcc
Confidence            35566666666666555666666667777766653 22111 112455666667777666543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.96  E-value=5.1e-07  Score=67.32  Aligned_cols=100  Identities=23%  Similarity=0.259  Sum_probs=54.5

Q ss_pred             CCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCch-hHHhhcCCCCCEE
Q 048618           24 FKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGEL-LSQICNMESLEKL  102 (207)
Q Consensus        24 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L  102 (207)
                      +.+.+.|+..+|.+.++  .....++.|+.|.|+-|+++..  +.+..+++|++|+|..|.|.+.. ...+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            44555666666665532  1234566666666666666443  33556666666666666665422 1334466666666


Q ss_pred             eCCCCcCCCCcc-----ccccCCCCCCEEE
Q 048618          103 NLSHNNLSGSIP-----NCFEGMHGLSVID  127 (207)
Q Consensus       103 ~l~~n~l~~~~~-----~~~~~~~~L~~l~  127 (207)
                      +|..|.-.+.-+     ..+..+++|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            666666554322     2344555555543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.96  E-value=3.2e-06  Score=62.34  Aligned_cols=109  Identities=28%  Similarity=0.295  Sum_probs=76.9

Q ss_pred             cCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCC--cCCCccchhhhCCCCCCEEecCCCCCCCchhHHh
Q 048618           16 RLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNN--QFVQELPKELEKLVQLSELDLSHNFLGGELLSQI   93 (207)
Q Consensus        16 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~   93 (207)
                      .+......+..|+.|.+.+..++..  ..|..+++|+.|.++.|  .+.+.++-....+++|++++++.|++..  +..+
T Consensus        34 ~~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl  109 (260)
T KOG2739|consen   34 KLGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTL  109 (260)
T ss_pred             Ccccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--cccc
Confidence            3555666778888888888877632  35778889999999999  4444444445567999999999999863  3333


Q ss_pred             ---hcCCCCCEEeCCCCcCCCC---ccccccCCCCCCEEEC
Q 048618           94 ---CNMESLEKLNLSHNNLSGS---IPNCFEGMHGLSVIDI  128 (207)
Q Consensus        94 ---~~l~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~l~l  128 (207)
                         ..+.+|..|++.+|..+..   -...+.-+++|+.+|-
T Consensus       110 ~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  110 RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence               4567788899998887753   1234556677776654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.95  E-value=2.7e-05  Score=52.18  Aligned_cols=106  Identities=13%  Similarity=0.196  Sum_probs=44.1

Q ss_pred             cccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCC
Q 048618           19 TEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMES   98 (207)
Q Consensus        19 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~   98 (207)
                      .+|.++.+|+.+.+.. .+.......|.+.++|+.+.+..+ +.......|..+++++.+.+.+ .+.......|....+
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            4455555666666553 343344445555556666665543 4434444455555566666644 333233344455556


Q ss_pred             CCEEeCCCCcCCCCccccccCCCCCCEEECC
Q 048618           99 LEKLNLSHNNLSGSIPNCFEGMHGLSVIDIS  129 (207)
Q Consensus        99 L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~  129 (207)
                      ++.+.+..+ +.......+... .++.+.+.
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence            666666543 332333444444 55555554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.78  E-value=1.4e-06  Score=64.98  Aligned_cols=98  Identities=27%  Similarity=0.222  Sum_probs=78.5

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccc-hhhhCCCCCCEEec
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELP-KELEKLVQLSELDL   80 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l   80 (207)
                      ++++|+..|+.+.++  ....+|+.|+.|.|+-|+|+..-  .|..+++|+.|+|+.|.|...-. .-+.++++|+.|.|
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            467889999998865  44578999999999999998653  47788999999999999975422 22678999999999


Q ss_pred             CCCCCCCchhH-----HhhcCCCCCEEe
Q 048618           81 SHNFLGGELLS-----QICNMESLEKLN  103 (207)
Q Consensus        81 ~~n~l~~~~~~-----~~~~l~~L~~L~  103 (207)
                      ..|...+..+.     .+..+++|+.||
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhcc
Confidence            99998776543     355688999886

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.76  E-value=0.0002  Score=57.17  Aligned_cols=71  Identities=17%  Similarity=0.302  Sum_probs=44.9

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +++.|++++|.++ .+|. +  ..+|++|.+++|.-....|..+.  .+|+.|++++|.-...+|.      +|+.|++.
T Consensus        53 ~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~  120 (426)
T PRK15386         53 ASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVRSLEIK  120 (426)
T ss_pred             CCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccceEEeC
Confidence            5778999999877 4552 2  24688899888654445665553  4788888888732223332      35556665


Q ss_pred             CCC
Q 048618           82 HNF   84 (207)
Q Consensus        82 ~n~   84 (207)
                      .+.
T Consensus       121 ~n~  123 (426)
T PRK15386        121 GSA  123 (426)
T ss_pred             CCC
Confidence            554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.74  E-value=8.3e-06  Score=61.60  Aligned_cols=82  Identities=23%  Similarity=0.341  Sum_probs=52.3

Q ss_pred             CccEEECCCCCCcc--cCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccch-hhhCCCCCCEE
Q 048618            2 SLTKLILRGNQLTG--RLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPK-ELEKLVQLSEL   78 (207)
Q Consensus         2 ~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L   78 (207)
                      .++.|||.+|.|+.  ++...+.+++.|++|+++.|++...+..-=..+.+|+.|-+.+..+.-...+ .+..+|.++++
T Consensus        72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel  151 (418)
T KOG2982|consen   72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL  151 (418)
T ss_pred             hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence            35678888888773  4556667888888888888887754432113455677777766665433322 23456666666


Q ss_pred             ecCCC
Q 048618           79 DLSHN   83 (207)
Q Consensus        79 ~l~~n   83 (207)
                      .++.|
T Consensus       152 HmS~N  156 (418)
T KOG2982|consen  152 HMSDN  156 (418)
T ss_pred             hhccc
Confidence            66666

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=1.1e-06  Score=66.28  Aligned_cols=131  Identities=26%  Similarity=0.280  Sum_probs=85.0

Q ss_pred             CccEEECCCCCCccc-CCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCc--cchhhhCCCCCCEE
Q 048618            2 SLTKLILRGNQLTGR-LPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQE--LPKELEKLVQLSEL   78 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L   78 (207)
                      .|+.+||+.-.|+.. .-..+..+.+|+.|.+.++.+.+.+...++.-..|..|+++.++-...  ..-.+.++..|.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            477889998888732 234457789999999999999988888899999999999998752222  22336788999999


Q ss_pred             ecCCCCCCCchhHHh-hc-CCCCCEEeCCCCcCC---CCccccccCCCCCCEEECCCCc
Q 048618           79 DLSHNFLGGELLSQI-CN-MESLEKLNLSHNNLS---GSIPNCFEGMHGLSVIDISDNQ  132 (207)
Q Consensus        79 ~l~~n~l~~~~~~~~-~~-l~~L~~L~l~~n~l~---~~~~~~~~~~~~L~~l~l~~n~  132 (207)
                      +++++.+........ .+ -.+|+.|+++|..-.   +.+....+.++.+.+||+++|-
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v  324 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV  324 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence            999997654322111 11 245555555553211   1112223345555556665553

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.71  E-value=3e-05  Score=66.20  Aligned_cols=125  Identities=24%  Similarity=0.303  Sum_probs=89.7

Q ss_pred             CCccEEECCCCCCcc-cCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCC-ccchhhhCCCCCCEE
Q 048618            1 NSLTKLILRGNQLTG-RLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQ-ELPKELEKLVQLSEL   78 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L   78 (207)
                      |+|+.|.+.+-.+.. ..-....++++|..||+++.+++..  ..+.++++||.|.|++=.+.. ..-..+.+|++|+.|
T Consensus       148 PsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL  225 (699)
T KOG3665|consen  148 PSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL  225 (699)
T ss_pred             cccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence            578899999877652 3345567899999999999999855  568899999999998877654 223456689999999


Q ss_pred             ecCCCCCCCch--h----HHhhcCCCCCEEeCCCCcCCCCcccc-ccCCCCCCEEE
Q 048618           79 DLSHNFLGGEL--L----SQICNMESLEKLNLSHNNLSGSIPNC-FEGMHGLSVID  127 (207)
Q Consensus        79 ~l~~n~l~~~~--~----~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~L~~l~  127 (207)
                      |+|..+.....  .    +....++.|+.||.+++.+....-+. +..-++|+.+.
T Consensus       226 DIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~  281 (699)
T KOG3665|consen  226 DISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA  281 (699)
T ss_pred             eccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence            99998765322  1    12235899999999999887644333 23344454433

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.63  E-value=1.2e-05  Score=60.74  Aligned_cols=106  Identities=26%  Similarity=0.322  Sum_probs=54.6

Q ss_pred             CCCEeeCcCCCCCCCcch-hhc-CCCCCCeeeccCCcCCCc--cchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCE
Q 048618           26 ELEYLDLSANRFNNSVPK-SLG-SLLKLHYLSLSNNQFVQE--LPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEK  101 (207)
Q Consensus        26 ~L~~L~L~~n~i~~~~~~-~~~-~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  101 (207)
                      .++.+.+.++.|..+... .|+ ..+.++.+|+.+|.++..  +...+.++|.|+.|+++.|.+...+...-....+|+.
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            334445555554422211 122 234566677777776543  3334566777777777777665432211124456666


Q ss_pred             EeCCCCcCCC-CccccccCCCCCCEEECCCC
Q 048618          102 LNLSHNNLSG-SIPNCFEGMHGLSVIDISDN  131 (207)
Q Consensus       102 L~l~~n~l~~-~~~~~~~~~~~L~~l~l~~n  131 (207)
                      |-|.+..+.- .....+..+|.+++|.++.|
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence            6666655431 12233445556666666665

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.51  E-value=0.0002  Score=47.93  Aligned_cols=117  Identities=14%  Similarity=0.228  Sum_probs=63.7

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +|+.+.+.. .+..+...+|.++.+|+.+.+..+ +.......|.+..+++.+.+.. .+.......|..+++++.+.+.
T Consensus        13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~   89 (129)
T PF13306_consen   13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP   89 (129)
T ss_dssp             T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred             CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence            577777775 566677778888888999998775 6656667788887888888865 4444555667778889999987


Q ss_pred             CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCC
Q 048618           82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLS  124 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~  124 (207)
                      .+ +.......+... .++.+.+.. .++.....+|.++++|+
T Consensus        90 ~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   90 SN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             TT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             cc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            65 544555566665 888888776 44435566777766653

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.49  E-value=0.00029  Score=52.88  Aligned_cols=133  Identities=23%  Similarity=0.254  Sum_probs=65.2

Q ss_pred             CCccEEECCCCCCcccCCcc----cCCCCCCCEeeCcCCCCCCCcchhh-------------cCCCCCCeeeccCCcCCC
Q 048618            1 NSLTKLILRGNQLTGRLPTE----IGSFKELEYLDLSANRFNNSVPKSL-------------GSLLKLHYLSLSNNQFVQ   63 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~----~~~l~~L~~L~L~~n~i~~~~~~~~-------------~~l~~L~~L~l~~n~l~~   63 (207)
                      +.|+..+|++|.+....|+.    +.+-..|..|.+++|.+...-...+             .+-|.|+......|++..
T Consensus        92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen  171 (388)
T COG5238          92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN  171 (388)
T ss_pred             CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc
Confidence            35677777887777555543    3556777777777776642211111             233556666666665532


Q ss_pred             ccc----hhhhCCCCCCEEecCCCCCCCchhH-----HhhcCCCCCEEeCCCCcCCCC----ccccccCCCCCCEEECCC
Q 048618           64 ELP----KELEKLVQLSELDLSHNFLGGELLS-----QICNMESLEKLNLSHNNLSGS----IPNCFEGMHGLSVIDISD  130 (207)
Q Consensus        64 ~~~----~~~~~l~~L~~L~l~~n~l~~~~~~-----~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~l~l~~  130 (207)
                      -..    ..+..-..|+++.+..|.+......     .+..+.+|+.|++..|-++-.    +...+..|+.|+.|.+..
T Consensus       172 gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnD  251 (388)
T COG5238         172 GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLND  251 (388)
T ss_pred             CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccc
Confidence            111    1122223455555555544322111     112234555555555555421    223344455555555555


Q ss_pred             CcC
Q 048618          131 NQL  133 (207)
Q Consensus       131 n~~  133 (207)
                      |-+
T Consensus       252 Cll  254 (388)
T COG5238         252 CLL  254 (388)
T ss_pred             hhh
Confidence            544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.39  E-value=0.00013  Score=53.98  Aligned_cols=100  Identities=25%  Similarity=0.209  Sum_probs=67.4

Q ss_pred             ccEEECCCCCCcccCCcccCCCCCCCEeeCcCC--CCCCCcchhhcCCCCCCeeeccCCcCCCc-cchhhhCCCCCCEEe
Q 048618            3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSAN--RFNNSVPKSLGSLLKLHYLSLSNNQFVQE-LPKELEKLVQLSELD   79 (207)
Q Consensus         3 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~   79 (207)
                      |+.|++.+..++..  ..+..+++|+.|.++.|  .+.+..+......++|++|++++|++.-. .-.....+.+|..|+
T Consensus        45 le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ld  122 (260)
T KOG2739|consen   45 LELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLD  122 (260)
T ss_pred             hhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhh
Confidence            45556666666522  34667899999999999  56555554455669999999999998521 112245677888999


Q ss_pred             cCCCCCCCc---hhHHhhcCCCCCEEeC
Q 048618           80 LSHNFLGGE---LLSQICNMESLEKLNL  104 (207)
Q Consensus        80 l~~n~l~~~---~~~~~~~l~~L~~L~l  104 (207)
                      +.+|..+..   --..|.-+++|+.|+-
T Consensus       123 l~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  123 LFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             cccCCccccccHHHHHHHHhhhhccccc
Confidence            999876542   2234555677777753

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.89  E-value=0.0049  Score=49.44  Aligned_cols=100  Identities=17%  Similarity=0.262  Sum_probs=64.4

Q ss_pred             CCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCC-CCCCchhHHhhcCCCCC
Q 048618           22 GSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHN-FLGGELLSQICNMESLE  100 (207)
Q Consensus        22 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~  100 (207)
                      ..+.+++.|++++|.+. ..| .+.  .+|+.|.++++.-...+|+.+.  .+|+.|++++| .+. .+|.      .|+
T Consensus        49 ~~~~~l~~L~Is~c~L~-sLP-~LP--~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe  115 (426)
T PRK15386         49 EEARASGRLYIKDCDIE-SLP-VLP--NELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVR  115 (426)
T ss_pred             HHhcCCCEEEeCCCCCc-ccC-CCC--CCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccc
Confidence            45789999999999887 445 222  3699999988655456666543  47999999998 454 4443      466


Q ss_pred             EEeCCCCcCC--CCccccccCC------------------CCCCEEECCCCcCc
Q 048618          101 KLNLSHNNLS--GSIPNCFEGM------------------HGLSVIDISDNQLQ  134 (207)
Q Consensus       101 ~L~l~~n~l~--~~~~~~~~~~------------------~~L~~l~l~~n~~~  134 (207)
                      .|++..+...  ..+|..+..+                  ++|+.|++++|...
T Consensus       116 ~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i  169 (426)
T PRK15386        116 SLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI  169 (426)
T ss_pred             eEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc
Confidence            6666655432  1233322221                  36788888877654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.65  E-value=0.00073  Score=30.37  Aligned_cols=21  Identities=38%  Similarity=0.612  Sum_probs=11.8

Q ss_pred             CccEEECCCCCCcccCCcccCC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGS   23 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~   23 (207)
                      +|++|++++|.++ .+|..|.+
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            3566666666666 44444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.55  E-value=0.0088  Score=45.18  Aligned_cols=84  Identities=26%  Similarity=0.350  Sum_probs=41.5

Q ss_pred             CccEEECCCCCCcccCCc----ccCCCCCCCEeeCcCCCCC---CCcch-------hhcCCCCCCeeeccCCcCCCccch
Q 048618            2 SLTKLILRGNQLTGRLPT----EIGSFKELEYLDLSANRFN---NSVPK-------SLGSLLKLHYLSLSNNQFVQELPK   67 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~----~~~~l~~L~~L~L~~n~i~---~~~~~-------~~~~l~~L~~L~l~~n~l~~~~~~   67 (207)
                      .+..++|+||.|..+-..    .+.+-.+|+..+++.-...   ..++.       .+..+++|+..+++.|-+....|+
T Consensus        31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e  110 (388)
T COG5238          31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE  110 (388)
T ss_pred             ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence            467788888888754332    2333455555554443221   11111       233455566666666655444333


Q ss_pred             hh----hCCCCCCEEecCCCCC
Q 048618           68 EL----EKLVQLSELDLSHNFL   85 (207)
Q Consensus        68 ~~----~~l~~L~~L~l~~n~l   85 (207)
                      .+    +.-+.|.+|.+++|.+
T Consensus       111 ~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238         111 ELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             HHHHHHhcCCCceeEEeecCCC
Confidence            32    3334555555555544

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=96.11  E-value=0.0051  Score=31.81  Aligned_cols=27  Identities=26%  Similarity=0.312  Sum_probs=16.2

Q ss_pred             eEeehHHHHHHHHHHHHHHHHhhhhcC
Q 048618          181 WFAIVFPVLGAVFVSMALIAIFILRKR  207 (207)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~rr  207 (207)
                      ..+++++++++++++.+++.+|++|+|
T Consensus        14 a~~VvVPV~vI~~vl~~~l~~~~rR~k   40 (40)
T PF08693_consen   14 AVGVVVPVGVIIIVLGAFLFFWYRRKK   40 (40)
T ss_pred             EEEEEechHHHHHHHHHHhheEEeccC
Confidence            566667666666666555554555543

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.06  E-value=0.0027  Score=28.47  Aligned_cols=10  Identities=50%  Similarity=0.860  Sum_probs=3.8

Q ss_pred             CeeeccCCcC
Q 048618           52 HYLSLSNNQF   61 (207)
Q Consensus        52 ~~L~l~~n~l   61 (207)
                      +.|++++|++
T Consensus         3 ~~Ldls~n~l   12 (22)
T PF00560_consen    3 EYLDLSGNNL   12 (22)
T ss_dssp             SEEEETSSEE
T ss_pred             cEEECCCCcC
Confidence            3333333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.04  E-value=0.014  Score=24.26  Aligned_cols=13  Identities=46%  Similarity=0.539  Sum_probs=5.6

Q ss_pred             CccEEECCCCCCc
Q 048618            2 SLTKLILRGNQLT   14 (207)
Q Consensus         2 ~L~~L~l~~n~i~   14 (207)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4555555555554

...

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=94.96  E-value=0.02  Score=37.80  Aligned_cols=28  Identities=32%  Similarity=0.433  Sum_probs=18.4

Q ss_pred             eeEeehHHHHHHHHHHHHHHHHhhhhcC
Q 048618          180 KWFAIVFPVLGAVFVSMALIAIFILRKR  207 (207)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~rr  207 (207)
                      ...+|++++++.++.+++++.|+++|||
T Consensus        65 ~i~~Ii~gv~aGvIg~Illi~y~irR~~   92 (122)
T PF01102_consen   65 AIIGIIFGVMAGVIGIILLISYCIRRLR   92 (122)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ceeehhHHHHHHHHHHHHHHHHHHHHHh
Confidence            3666777777666666666666666654

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>PTZ00382 Variant-specific surface protein (VSP); Provisional

Probab=94.89  E-value=0.035  Score=35.21  Aligned_cols=28  Identities=18%  Similarity=0.173  Sum_probs=14.3

Q ss_pred             eeEeehHHHHHHHHHHHHHH-HHhhhhcC
Q 048618          180 KWFAIVFPVLGAVFVSMALI-AIFILRKR  207 (207)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~-~~~~~~rr  207 (207)
                      ...+|++++++++.+++.++ .||++|||
T Consensus        67 aiagi~vg~~~~v~~lv~~l~w~f~~r~k   95 (96)
T PTZ00382         67 AIAGISVAVVAVVGGLVGFLCWWFVCRGK   95 (96)
T ss_pred             cEEEEEeehhhHHHHHHHHHhheeEEeec
Confidence            36666665555554444444 34444554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.88  E-value=0.027  Score=46.17  Aligned_cols=60  Identities=28%  Similarity=0.275  Sum_probs=24.0

Q ss_pred             CCCCCEEecCCCC-CCCchhHHhhc-CCCCCEEeCCCCc-CCCC-ccccccCCCCCCEEECCCC
Q 048618           72 LVQLSELDLSHNF-LGGELLSQICN-MESLEKLNLSHNN-LSGS-IPNCFEGMHGLSVIDISDN  131 (207)
Q Consensus        72 l~~L~~L~l~~n~-l~~~~~~~~~~-l~~L~~L~l~~n~-l~~~-~~~~~~~~~~L~~l~l~~n  131 (207)
                      +.+|+.++++++. +++..-..+.. .++|+.|.+.++. ++.. +......++.|++|+++++
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c  305 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC  305 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence            3444455554444 33332222222 3445555444443 3322 1222233444555555444

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.73  E-value=0.0062  Score=43.79  Aligned_cols=83  Identities=19%  Similarity=0.213  Sum_probs=55.6

Q ss_pred             CCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCC-chhHHhh-cCCCCCEEeCCCCc-CCCCccccccCCCCCCEE
Q 048618           50 KLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGG-ELLSQIC-NMESLEKLNLSHNN-LSGSIPNCFEGMHGLSVI  126 (207)
Q Consensus        50 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~-~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~l  126 (207)
                      .++.+|-++..+....-+.+.++++++.|.+.+++--+ ...+.++ ..++|+.|++++|. ||..--.++..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            46677777777776666677777888888877775322 2222222 35788888888774 776666777778888877


Q ss_pred             ECCCCc
Q 048618          127 DISDNQ  132 (207)
Q Consensus       127 ~l~~n~  132 (207)
                      .+.+=+
T Consensus       182 ~l~~l~  187 (221)
T KOG3864|consen  182 HLYDLP  187 (221)
T ss_pred             HhcCch
Confidence            776544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.22  E-value=0.05  Score=25.22  Aligned_cols=11  Identities=64%  Similarity=0.754  Sum_probs=4.3

Q ss_pred             CCeeeccCCcC
Q 048618           51 LHYLSLSNNQF   61 (207)
Q Consensus        51 L~~L~l~~n~l   61 (207)
                      |+.|++.+|.+
T Consensus         4 L~~L~L~~N~l   14 (26)
T smart00370        4 LRELDLSNNQL   14 (26)
T ss_pred             CCEEECCCCcC
Confidence            33333333333

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.22  E-value=0.05  Score=25.22  Aligned_cols=11  Identities=64%  Similarity=0.754  Sum_probs=4.3

Q ss_pred             CCeeeccCCcC
Q 048618           51 LHYLSLSNNQF   61 (207)
Q Consensus        51 L~~L~l~~n~l   61 (207)
                      |+.|++.+|.+
T Consensus         4 L~~L~L~~N~l   14 (26)
T smart00369        4 LRELDLSNNQL   14 (26)
T ss_pred             CCEEECCCCcC
Confidence            33333333333

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.12  E-value=0.00089  Score=54.99  Aligned_cols=113  Identities=28%  Similarity=0.350  Sum_probs=52.5

Q ss_pred             CCCCCCCEeeCcCCCCCC----Ccchhhc----CCCCCCeeeccCCcCCCc----cchhhhCCCC-CCEEecCCCCCCCc
Q 048618           22 GSFKELEYLDLSANRFNN----SVPKSLG----SLLKLHYLSLSNNQFVQE----LPKELEKLVQ-LSELDLSHNFLGGE   88 (207)
Q Consensus        22 ~~l~~L~~L~L~~n~i~~----~~~~~~~----~l~~L~~L~l~~n~l~~~----~~~~~~~l~~-L~~L~l~~n~l~~~   88 (207)
                      .....++.++++.|.+..    .++..+.    ...++++|.+.+|.++..    ....+...++ +..+++.+|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            334555555555555421    1111222    244555566655555421    1112222333 44466666655432


Q ss_pred             hh----HHhhcC-CCCCEEeCCCCcCCCC----ccccccCCCCCCEEECCCCcCc
Q 048618           89 LL----SQICNM-ESLEKLNLSHNNLSGS----IPNCFEGMHGLSVIDISDNQLQ  134 (207)
Q Consensus        89 ~~----~~~~~l-~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~l~l~~n~~~  134 (207)
                      ..    ..+..+ +.++.+++..|.++..    ..+++..++.++.+.+..|++.
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            11    122223 4556666666666543    2334445556666666666653

>TIGR01478 STEVOR variant surface antigen, stevor family

Probab=94.08  E-value=0.043  Score=41.35  Aligned_cols=27  Identities=26%  Similarity=0.397  Sum_probs=18.4

Q ss_pred             eEeehHHHHHHHHHHHHHHHHhhhhcC
Q 048618          181 WFAIVFPVLGAVFVSMALIAIFILRKR  207 (207)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~rr  207 (207)
                      .-+|.+.|+.++.|+++++.+|+||||
T Consensus       260 Pcgiaalvllil~vvliiLYiWlyrrR  286 (295)
T TIGR01478       260 PYGIAALVLIILTVVLIILYIWLYRRR  286 (295)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            445555555666666777788888887

This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.

>PTZ00370 STEVOR; Provisional

Probab=94.02  E-value=0.045  Score=41.33  Aligned_cols=27  Identities=26%  Similarity=0.397  Sum_probs=18.2

Q ss_pred             eEeehHHHHHHHHHHHHHHHHhhhhcC
Q 048618          181 WFAIVFPVLGAVFVSMALIAIFILRKR  207 (207)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~rr  207 (207)
                      ..+|.+.|+.++.|+++++.+|+||||
T Consensus       256 Pygiaalvllil~vvliilYiwlyrrR  282 (296)
T PTZ00370        256 PYGIAALVLLILAVVLIILYIWLYRRR  282 (296)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            445555555566666777778888887

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.00  E-value=0.06  Score=24.95  Aligned_cols=22  Identities=32%  Similarity=0.507  Sum_probs=13.3

Q ss_pred             CCCCCEeeCcCCCCCCCcchhh
Q 048618           24 FKELEYLDLSANRFNNSVPKSL   45 (207)
Q Consensus        24 l~~L~~L~L~~n~i~~~~~~~~   45 (207)
                      +++|+.|+|++|.+....+..|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            3566777777777764444433

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.00  E-value=0.06  Score=24.95  Aligned_cols=22  Identities=32%  Similarity=0.507  Sum_probs=13.3

Q ss_pred             CCCCCEeeCcCCCCCCCcchhh
Q 048618           24 FKELEYLDLSANRFNNSVPKSL   45 (207)
Q Consensus        24 l~~L~~L~L~~n~i~~~~~~~~   45 (207)
                      +++|+.|+|++|.+....+..|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            3566777777777764444433

>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P

Probab=93.91  E-value=0.011  Score=37.86  Aligned_cols=23  Identities=17%  Similarity=0.281  Sum_probs=1.3

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhcC
Q 048618          185 VFPVLGAVFVSMALIAIFILRKR  207 (207)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~rr  207 (207)
                      .++++++++.+++++.+|+||||
T Consensus        28 GIGiL~VILgiLLliGCWYckRR   50 (118)
T PF14991_consen   28 GIGILIVILGILLLIGCWYCKRR   50 (118)
T ss_dssp             SSS--------------------
T ss_pred             cceeHHHHHHHHHHHhheeeeec
Confidence            34455566677777888888887

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=93.87  E-value=0.053  Score=44.49  Aligned_cols=90  Identities=30%  Similarity=0.190  Sum_probs=42.0

Q ss_pred             ccCCCCCCCEeeCcCC-CCCCCcc----hhhcCCCCCCeeeccCCc-CCCccchhhh-CCCCCCEEecCCCC-CCCchhH
Q 048618           20 EIGSFKELEYLDLSAN-RFNNSVP----KSLGSLLKLHYLSLSNNQ-FVQELPKELE-KLVQLSELDLSHNF-LGGELLS   91 (207)
Q Consensus        20 ~~~~l~~L~~L~L~~n-~i~~~~~----~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-~l~~L~~L~l~~n~-l~~~~~~   91 (207)
                      ....++.|+.|+++++ ......+    ......++|+.|+++++. ++...-..+. .+++|+.|.+.++. +++..-.
T Consensus       209 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~  288 (482)
T KOG1947|consen  209 LALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLV  288 (482)
T ss_pred             HHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHH
Confidence            3345566666666652 1111111    112334556666666655 3332222222 25566666655555 4443333


Q ss_pred             Hhh-cCCCCCEEeCCCCcC
Q 048618           92 QIC-NMESLEKLNLSHNNL  109 (207)
Q Consensus        92 ~~~-~l~~L~~L~l~~n~l  109 (207)
                      .+. .++.|++|+++++..
T Consensus       289 ~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  289 SIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             HHHHhcCcccEEeeecCcc
Confidence            322 345566666665543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.33  E-value=0.0013  Score=48.31  Aligned_cols=87  Identities=26%  Similarity=0.282  Sum_probs=44.9

Q ss_pred             cCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCC
Q 048618           21 IGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLE  100 (207)
Q Consensus        21 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  100 (207)
                      +......+.||++.|++. .....|.-++++..|+++.|.+ ...|..+.....+..+++..|... ..|..++..+.++
T Consensus        38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~-~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQI-KFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK  114 (326)
T ss_pred             hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhH-hhChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence            344455555555555543 2333344455555555555554 244555555555555555555554 4455555555555


Q ss_pred             EEeCCCCcCC
Q 048618          101 KLNLSHNNLS  110 (207)
Q Consensus       101 ~L~l~~n~l~  110 (207)
                      .+++.+|.++
T Consensus       115 ~~e~k~~~~~  124 (326)
T KOG0473|consen  115 KNEQKKTEFF  124 (326)
T ss_pred             hhhhccCcch
Confidence            5555555543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.91  E-value=0.0011  Score=48.79  Aligned_cols=88  Identities=23%  Similarity=0.248  Sum_probs=52.6

Q ss_pred             hhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCC
Q 048618           43 KSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHG  122 (207)
Q Consensus        43 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~  122 (207)
                      ..+..+.+...||++.|.+. .+...|+-++.+..++++.|.+. ..|..++....+..+++..|..+ ..|..++..+.
T Consensus        36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~  112 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH  112 (326)
T ss_pred             hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence            34555566666666666653 23334555566666666666665 45555555555666666666655 55666666666


Q ss_pred             CCEEECCCCcC
Q 048618          123 LSVIDISDNQL  133 (207)
Q Consensus       123 L~~l~l~~n~~  133 (207)
                      ++.+++-++++
T Consensus       113 ~k~~e~k~~~~  123 (326)
T KOG0473|consen  113 PKKNEQKKTEF  123 (326)
T ss_pred             cchhhhccCcc
Confidence            66666666655

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=92.83  E-value=0.053  Score=37.00  Aligned_cols=27  Identities=11%  Similarity=0.246  Sum_probs=17.2

Q ss_pred             eeEeehHHHHHHHHHHHHHHHHhhhhc
Q 048618          180 KWFAIVFPVLGAVFVSMALIAIFILRK  206 (207)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~r  206 (207)
                      ..+++++++.+.+++++++++|++|+|
T Consensus        50 IVIGvVVGVGg~ill~il~lvf~~c~r   76 (154)
T PF04478_consen   50 IVIGVVVGVGGPILLGILALVFIFCIR   76 (154)
T ss_pred             EEEEEEecccHHHHHHHHHhheeEEEe
Confidence            477777777776666666665555443

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>TIGR00864 PCC polycystin cation channel protein

Probab=92.70  E-value=0.077  Score=51.65  Aligned_cols=38  Identities=24%  Similarity=0.281  Sum_probs=24.6

Q ss_pred             eCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC
Q 048618          103 NLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS  140 (207)
Q Consensus       103 ~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~  140 (207)
                      ||++|.|+...+..|..+++|+.|+|++|++.|.|...
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~   38 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLA   38 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccccccccH
Confidence            45666666555566666666777777777777666654

Note: this model has been restricted to the amino half because for technical reasons.

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=92.29  E-value=0.049  Score=24.74  Aligned_cols=13  Identities=46%  Similarity=0.611  Sum_probs=4.9

Q ss_pred             CCCEEecCCCCCC
Q 048618           74 QLSELDLSHNFLG   86 (207)
Q Consensus        74 ~L~~L~l~~n~l~   86 (207)
                      +|++|++++|.++
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            3444444444443

...

>PF15102 TMEM154: TMEM154 protein family

Probab=91.82  E-value=0.21  Score=33.89  Aligned_cols=27  Identities=7%  Similarity=0.253  Sum_probs=13.5

Q ss_pred             eeEeehHHHHH-HHHHHHHHHHHhhhhc
Q 048618          180 KWFAIVFPVLG-AVFVSMALIAIFILRK  206 (207)
Q Consensus       180 ~~~~~~~~~~~-~~~~~~~~~~~~~~~r  206 (207)
                      +.++|+++.++ ++++++++++++++||
T Consensus        57 fiLmIlIP~VLLvlLLl~vV~lv~~~kR   84 (146)
T PF15102_consen   57 FILMILIPLVLLVLLLLSVVCLVIYYKR   84 (146)
T ss_pred             eEEEEeHHHHHHHHHHHHHHHheeEEee
Confidence            37777777333 3334444444444444

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.41  E-value=0.0026  Score=52.34  Aligned_cols=108  Identities=34%  Similarity=0.365  Sum_probs=55.4

Q ss_pred             ccEEECCCCCCccc----CCcccCCCCCCCEeeCcCCCCCCCcchhhc----CC-CCCCeeeccCCcCCCc----cchhh
Q 048618            3 LTKLILRGNQLTGR----LPTEIGSFKELEYLDLSANRFNNSVPKSLG----SL-LKLHYLSLSNNQFVQE----LPKEL   69 (207)
Q Consensus         3 L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~----~l-~~L~~L~l~~n~l~~~----~~~~~   69 (207)
                      +..|.|.+|.+...    +...+...++|+.|++++|.+.+.....+.    .. ..+++|++..|.++..    +.+.+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            45566667766643    223445667777777777777643322221    11 3345566666655543    23334


Q ss_pred             hCCCCCCEEecCCCCCCC----chhHHhh----cCCCCCEEeCCCCcCC
Q 048618           70 EKLVQLSELDLSHNFLGG----ELLSQIC----NMESLEKLNLSHNNLS  110 (207)
Q Consensus        70 ~~l~~L~~L~l~~n~l~~----~~~~~~~----~l~~L~~L~l~~n~l~  110 (207)
                      .....++.++++.|.+..    ..+..+.    ...++++|.+.+|.++
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t  217 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT  217 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence            445556666666665521    1122222    2455556666555554

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=91.23  E-value=0.31  Score=24.84  Aligned_cols=12  Identities=17%  Similarity=0.293  Sum_probs=4.5

Q ss_pred             ehHHHHHHHHHH
Q 048618          184 IVFPVLGAVFVS  195 (207)
Q Consensus       184 ~~~~~~~~~~~~  195 (207)
                      +++++++.+.++
T Consensus         8 IIv~V~vg~~ii   19 (38)
T PF02439_consen    8 IIVAVVVGMAII   19 (38)
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.75  E-value=0.077  Score=38.33  Aligned_cols=85  Identities=22%  Similarity=0.212  Sum_probs=57.7

Q ss_pred             CCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCC-ccchhhh-CCCCCCEEecCCC-CCCCchhHHhhcCCCCC
Q 048618           24 FKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQ-ELPKELE-KLVQLSELDLSHN-FLGGELLSQICNMESLE  100 (207)
Q Consensus        24 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~-~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~  100 (207)
                      -..++.++-+++.|..+.-+.+.++++++.|.+.+|.--+ ..-+-++ -.++|+.|+++.| .|++.....+..+++|+
T Consensus       100 ~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr  179 (221)
T KOG3864|consen  100 NVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR  179 (221)
T ss_pred             cceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence            3456777888887776666667778888888877765322 1112222 3468999999977 47777777777888888


Q ss_pred             EEeCCCCc
Q 048618          101 KLNLSHNN  108 (207)
Q Consensus       101 ~L~l~~n~  108 (207)
                      .|.+.+-.
T Consensus       180 ~L~l~~l~  187 (221)
T KOG3864|consen  180 RLHLYDLP  187 (221)
T ss_pred             HHHhcCch
Confidence            88776543

>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world

Probab=88.92  E-value=0.4  Score=37.08  Aligned_cols=16  Identities=19%  Similarity=0.397  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHhhhhc
Q 048618          191 AVFVSMALIAIFILRK  206 (207)
Q Consensus       191 ~~~~~~~~~~~~~~~r  206 (207)
                      ++++.+++..+++|||
T Consensus       268 IVLIMvIIYLILRYRR  283 (299)
T PF02009_consen  268 IVLIMVIIYLILRYRR  283 (299)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333444566666

Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].

>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins

Probab=88.11  E-value=0.29  Score=32.23  Aligned_cols=12  Identities=17%  Similarity=0.332  Sum_probs=4.9

Q ss_pred             CCCCCCCCCCcc
Q 048618          158 CGGVKGMQPCKV  169 (207)
Q Consensus       158 c~~~~~~~~~~~  169 (207)
                      |...+....|..
T Consensus        55 C~~~P~S~~C~~   66 (129)
T PF12191_consen   55 CPAYPKSPFCQG   66 (129)
T ss_dssp             HCC-TT-CCCCC
T ss_pred             CCCCCCCccccC
Confidence            444455555543

Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.

>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]

Probab=87.45  E-value=0.18  Score=28.98  Aligned_cols=7  Identities=43%  Similarity=0.771  Sum_probs=0.4

Q ss_pred             HHhhhhc
Q 048618          200 AIFILRK  206 (207)
Q Consensus       200 ~~~~~~r  206 (207)
                      ++|++|+
T Consensus        32 ~iyR~rk   38 (64)
T PF01034_consen   32 LIYRMRK   38 (64)
T ss_dssp             -----S-
T ss_pred             HHHHHHh
Confidence            3444444

Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.

>PHA03265 envelope glycoprotein D; Provisional

Probab=86.59  E-value=0.57  Score=36.56  Aligned_cols=27  Identities=22%  Similarity=0.250  Sum_probs=14.3

Q ss_pred             eEeehHHHHHHHHHHHHHHHHhhhhcC
Q 048618          181 WFAIVFPVLGAVFVSMALIAIFILRKR  207 (207)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~rr  207 (207)
                      ..+++++.+++-++++.++.+++||||
T Consensus       349 ~~g~~ig~~i~glv~vg~il~~~~rr~  375 (402)
T PHA03265        349 FVGISVGLGIAGLVLVGVILYVCLRRK  375 (402)
T ss_pred             ccceEEccchhhhhhhhHHHHHHhhhh
Confidence            444444455555555555556666554

>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear

Probab=86.40  E-value=0.49  Score=36.89  Aligned_cols=27  Identities=33%  Similarity=0.313  Sum_probs=14.9

Q ss_pred             eEeehHHHHHHHHHHHHHHHHhhhhcC
Q 048618          181 WFAIVFPVLGAVFVSMALIAIFILRKR  207 (207)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~rr  207 (207)
                      +.-|+++++.+++++++++++++.|||
T Consensus       272 ~vPIaVG~~La~lvlivLiaYli~Rrr  298 (306)
T PF01299_consen  272 LVPIAVGAALAGLVLIVLIAYLIGRRR  298 (306)
T ss_pred             hHHHHHHHHHHHHHHHHHHhheeEecc
Confidence            445544444455555555566666665

Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=86.06  E-value=0.5  Score=39.31  Aligned_cols=64  Identities=34%  Similarity=0.377  Sum_probs=31.0

Q ss_pred             CCCCCCeeeccCCcCCCc--cchhhhCCCCCCEEecCCC--CCCCc-hhHHhhcCCCCCEEeCCCCcCCC
Q 048618           47 SLLKLHYLSLSNNQFVQE--LPKELEKLVQLSELDLSHN--FLGGE-LLSQICNMESLEKLNLSHNNLSG  111 (207)
Q Consensus        47 ~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n--~l~~~-~~~~~~~l~~L~~L~l~~n~l~~  111 (207)
                      +.+.+..+.+++|++...  ....-+..++|+.|+|++|  .+... ..+.+ ....|++|.+.||.+..
T Consensus       216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~-k~l~Leel~l~GNPlc~  284 (585)
T KOG3763|consen  216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL-KGLPLEELVLEGNPLCT  284 (585)
T ss_pred             CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh-cCCCHHHeeecCCcccc
Confidence            344555666666665433  1112233456666677666  33211 11111 22346666666666653

>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains

Probab=86.03  E-value=0.73  Score=33.48  Aligned_cols=25  Identities=20%  Similarity=0.327  Sum_probs=12.7

Q ss_pred             eEeehHHHHHHHHHHHHHHHHhhhh
Q 048618          181 WFAIVFPVLGAVFVSMALIAIFILR  205 (207)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~  205 (207)
                      .++++++++++++++++++++.+||
T Consensus        40 ~iaiVAG~~tVILVI~i~v~vR~CR   64 (221)
T PF08374_consen   40 MIAIVAGIMTVILVIFIVVLVRYCR   64 (221)
T ss_pred             eeeeecchhhhHHHHHHHHHHHHHh
Confidence            5555555555555555554444344

They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].

>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues

Probab=85.67  E-value=1.9  Score=22.90  Aligned_cols=22  Identities=23%  Similarity=0.622  Sum_probs=16.7

Q ss_pred             eEeehHHHHHHHHHHHHHHHHh
Q 048618          181 WFAIVFPVLGAVFVSMALIAIF  202 (207)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~  202 (207)
                      |+.++.++++++++++++.+.|
T Consensus         2 Wl~V~~iilg~~ll~~LigiCw   23 (49)
T PF05624_consen    2 WLFVVLIILGALLLLLLIGICW   23 (49)
T ss_pred             eEEEeHHHHHHHHHHHHHHHHH
Confidence            6778888888888777777654

LISCH7 is a liver-specific BHLH-ZIP transcription factor.

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=84.78  E-value=1  Score=21.22  Aligned_cols=14  Identities=64%  Similarity=0.831  Sum_probs=8.1

Q ss_pred             CCCEEecCCCCCCC
Q 048618           74 QLSELDLSHNFLGG   87 (207)
Q Consensus        74 ~L~~L~l~~n~l~~   87 (207)
                      +|++|+|++|.+..
T Consensus         3 ~L~~LdL~~N~i~~   16 (28)
T smart00368        3 SLRELDLSNNKLGD   16 (28)
T ss_pred             ccCEEECCCCCCCH
Confidence            45666666666543

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=84.34  E-value=0.91  Score=21.16  Aligned_cols=13  Identities=31%  Similarity=0.442  Sum_probs=7.9

Q ss_pred             CccEEECCCCCCc
Q 048618            2 SLTKLILRGNQLT   14 (207)
Q Consensus         2 ~L~~L~l~~n~i~   14 (207)
                      +|+.|++++|.|+
T Consensus         3 ~L~~L~L~~NkI~   15 (26)
T smart00365        3 NLEELDLSQNKIK   15 (26)
T ss_pred             ccCEEECCCCccc
Confidence            4566666666665

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=83.47  E-value=0.76  Score=37.08  Aligned_cols=112  Identities=24%  Similarity=0.266  Sum_probs=65.2

Q ss_pred             CCCCCCCEeeCcCCCC-CCCcchhh-cCCCCCCeeeccCCcCCCc--cchhhhCCCCCCEEecCCCCC-CCchhHHh---
Q 048618           22 GSFKELEYLDLSANRF-NNSVPKSL-GSLLKLHYLSLSNNQFVQE--LPKELEKLVQLSELDLSHNFL-GGELLSQI---   93 (207)
Q Consensus        22 ~~l~~L~~L~L~~n~i-~~~~~~~~-~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~---   93 (207)
                      .+..+|++|.+..++. +......+ .+.+.|+.+++..+.....  +.+.-.+++.|+.+.++++.. ++.....+   
T Consensus       317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~  396 (483)
T KOG4341|consen  317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS  396 (483)
T ss_pred             cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence            4567777777777652 22111112 3456777777776654321  222234567888888888864 32211222   


Q ss_pred             -hcCCCCCEEeCCCCcCCC-CccccccCCCCCCEEECCCCcC
Q 048618           94 -CNMESLEKLNLSHNNLSG-SIPNCFEGMHGLSVIDISDNQL  133 (207)
Q Consensus        94 -~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~l~l~~n~~  133 (207)
                       ..+..|+.+.|++++... ..-+.+..+++|+.+++-+++-
T Consensus       397 ~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  397 SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             cccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence             245677788888876542 2334566677888887777654

>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins

Probab=83.16  E-value=2.9  Score=30.34  Aligned_cols=26  Identities=12%  Similarity=0.100  Sum_probs=12.7

Q ss_pred             EeehHHHHH--HHHHHHHHHHHhhhhcC
Q 048618          182 FAIVFPVLG--AVFVSMALIAIFILRKR  207 (207)
Q Consensus       182 ~~~~~~~~~--~~~~~~~~~~~~~~~rr  207 (207)
                      ..|++.+.+  .+++++++.++++++||
T Consensus       101 ~lI~lv~~g~~lLla~~~~~~Y~~~~Rr  128 (202)
T PF06365_consen  101 TLIALVTSGSFLLLAILLGAGYCCHQRR  128 (202)
T ss_pred             EEEehHHhhHHHHHHHHHHHHHHhhhhc
Confidence            444444444  33334444456777665

The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].

>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins

Probab=81.37  E-value=0.72  Score=30.44  Aligned_cols=8  Identities=13%  Similarity=0.061  Sum_probs=0.0

Q ss_pred             HHHhhhhc
Q 048618          199 IAIFILRK  206 (207)
Q Consensus       199 ~~~~~~~r  206 (207)
                      ++++.+||
T Consensus        99 lv~rrcrr  106 (129)
T PF12191_consen   99 LVWRRCRR  106 (129)
T ss_dssp             --------
T ss_pred             HHHhhhhc
Confidence            33444444

Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	207
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-11
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-10
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-11
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-10
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		5e-06

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 69/138 (50%)
Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKXXXXXXXXXXXXXXNNQ 60
           N+L +L L+ N  TG++P  + +  EL  L LS N  + ++P                N 
Sbjct: 391 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
              E+P+EL  +  L  L L  N L GE+ S + N  +L  ++LS+N L+G IP     +
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 121 HGLSVIDISDNQLQGPVP 138
             L+++ +S+N   G +P
Sbjct: 511 ENLAILKLSNNSFSGNIP 528

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 50/101 (49%)
Query: 59  NQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFE 118
           N     +PKE+  +  L  L+L HN + G +  ++ ++  L  L+LS N L G IP    
Sbjct: 639 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 698
Query: 119 GMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCG 159
            +  L+ ID+S+N L GP+P    F   P      N  LCG
Sbjct: 699 ALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 739

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 69/138 (50%)
Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKXXXXXXXXXXXXXXNNQ 60
           N+L +L L+ N  TG++P  + +  EL  L LS N  + ++P                N 
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
              E+P+EL  +  L  L L  N L GE+ S + N  +L  ++LS+N L+G IP     +
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 121 HGLSVIDISDNQLQGPVP 138
             L+++ +S+N   G +P
Sbjct: 514 ENLAILKLSNNSFSGNIP 531

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 50/101 (49%)
Query: 59  NQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFE 118
           N     +PKE+  +  L  L+L HN + G +  ++ ++  L  L+LS N L G IP    
Sbjct: 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701
Query: 119 GMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCG 159
            +  L+ ID+S+N L GP+P    F   P      N  LCG
Sbjct: 702 ALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 70/182 (38%), Gaps = 25/182 (13%)
Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKXXXXXXXX-XXXXXXNNQ 60
           +L  L    N L+G LP  I S   L  +    NR + ++P                 N+
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185
Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGEL-----------------------LSQICNME 97
              ++P     L  L+ +DLS N L G+                        L ++   +
Sbjct: 186 LTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK 244
Query: 98  SLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKEL 157
           +L  L+L +N + G++P     +  L  +++S N L G +P     +   V A   NK L
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304
Query: 158 CG 159
           CG
Sbjct: 305 CG 306

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	207
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-46
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-35
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-44
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-35
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-33
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-33
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-33
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-31
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-29
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-28
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-31
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-30
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-27
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-25
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-25
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-26
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-23
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-23
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-21
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-17
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-16
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-12
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-12
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	6e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	8e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	6e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	9e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	6e-06
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	3e-05
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	4e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-04
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	3e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  154 bits (393), Expect = 1e-46
 Identities = 42/167 (25%), Positives = 77/167 (46%), Gaps = 5/167 (2%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKEL-EYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
           +L  +   GN+++G +P   GSF +L   + +S NR    +P +  +L  L ++ LS N 
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNM 208

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
              +            ++ L+ N L  +L  ++   ++L  L+L +N + G++P     +
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQL 267

Query: 121 HGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQPC 167
             L  +++S N L G +P     +   V A   NK LCG    +  C
Sbjct: 268 KFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS--PLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  125 bits (316), Expect = 3e-35
 Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 4/144 (2%)

Query: 1   NSLTKLILRGNQLTGR--LPTEIGSFKELEYLDLS-ANRFNNSVPKSLGSLLKLHYLSLS 57
             +  L L G  L     +P+ + +   L +L +   N     +P ++  L +LHYL ++
Sbjct: 50  YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109

Query: 58  NNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCF 117
           +      +P  L ++  L  LD S+N L G L   I ++ +L  +    N +SG+IP+ +
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169

Query: 118 EGMHGLS-VIDISDNQLQGPVPNS 140
                L   + IS N+L G +P +
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPT 193

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 81.0 bits (201), Expect = 1e-18
 Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 3/114 (2%)

Query: 30  LDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF--VQELPKELEKLVQLSELDLSH-NFLG 86
            D     +   +  +     +++ L LS         +P  L  L  L+ L +   N L 
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 87  GELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS 140
           G +   I  +  L  L ++H N+SG+IP+    +  L  +D S N L G +P S
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.5 bits (101), Expect = 4e-05
 Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 76  SELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGS--IPNCFEGMHGLSVIDISD-NQ 132
              D  +    G L         +  L+LS  NL     IP+    +  L+ + I   N 
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 133 LQGPVPNS 140
           L GP+P +
Sbjct: 89  LVGPIPPA 96

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  155 bits (393), Expect = 5e-44
 Identities = 37/155 (23%), Positives = 66/155 (42%)

Query: 6   LILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQEL 65
                 +  G    ++         ++++  +      +  +   + +L +S N     +
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648

Query: 66  PKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSV 125
           PKE+  +  L  L+L HN + G +  ++ ++  L  L+LS N L G IP     +  L+ 
Sbjct: 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708

Query: 126 IDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGG 160
           ID+S+N L GP+P    F   P      N  LCG 
Sbjct: 709 IDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGY 743

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  133 bits (336), Expect = 3e-36
 Identities = 51/140 (36%), Positives = 78/140 (55%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
           N+L +L L+ N  TG++P  + +  EL  L LS N  + ++P SLGSL KL  L L  N 
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
              E+P+EL  +  L  L L  N L GE+ S + N  +L  ++LS+N L+G IP     +
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513

Query: 121 HGLSVIDISDNQLQGPVPNS 140
             L+++ +S+N   G +P  
Sbjct: 514 ENLAILKLSNNSFSGNIPAE 533

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  132 bits (334), Expect = 5e-36
 Identities = 45/139 (32%), Positives = 68/139 (48%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
            L  L L  N L+G +P+ +GS  +L  L L  N     +P+ L  +  L  L L  N  
Sbjct: 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
             E+P  L     L+ + LS+N L GE+   I  +E+L  L LS+N+ SG+IP       
Sbjct: 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 538

Query: 122 GLSVIDISDNQLQGPVPNS 140
            L  +D++ N   G +P +
Sbjct: 539 SLIWLDLNTNLFNGTIPAA 557

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  130 bits (329), Expect = 3e-35
 Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 2/141 (1%)

Query: 2   SLTKLILRGNQLTGRLPTEIG--SFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNN 59
           SL  L L  N  +G +   +       L+ L L  N F   +P +L +  +L  L LS N
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428

Query: 60  QFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEG 119
                +P  L  L +L +L L  N L GE+  ++  +++LE L L  N+L+G IP+    
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488

Query: 120 MHGLSVIDISDNQLQGPVPNS 140
              L+ I +S+N+L G +P  
Sbjct: 489 CTNLNWISLSNNRLTGEIPKW 509

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  125 bits (315), Expect = 2e-33
 Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 4/141 (2%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           +L  L +  N  +  +P  +G    L++LD+S N+ +    +++ +  +L  L++S+NQF
Sbjct: 201 NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQIC-NMESLEKLNLSHNNLSGSIPNCFEGM 120
           V  +P     L  L  L L+ N   GE+   +    ++L  L+LS N+  G++P  F   
Sbjct: 260 VGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317

Query: 121 HGLSVIDISDNQLQGPVPNST 141
             L  + +S N   G +P  T
Sbjct: 318 SLLESLALSSNNFSGELPMDT 338

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  124 bits (314), Expect = 3e-33
 Identities = 53/143 (37%), Positives = 73/143 (51%), Gaps = 4/143 (2%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPK-SLGSLLKLHYLSLSNNQ 60
           +LT L L GN   G +P   GS   LE L LS+N F+  +P  +L  +  L  L LS N+
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354

Query: 61  FVQELPKELEKL-VQLSELDLSHNFLGGELLSQICN--MESLEKLNLSHNNLSGSIPNCF 117
           F  ELP+ L  L   L  LDLS N   G +L  +C     +L++L L +N  +G IP   
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414

Query: 118 EGMHGLSVIDISDNQLQGPVPNS 140
                L  + +S N L G +P+S
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSS 437

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  124 bits (313), Expect = 4e-33
 Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 4/139 (2%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
            L  L L  N L G +P E+   K LE L L  N     +P  L +   L+++SLSNN+ 
Sbjct: 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
             E+PK + +L  L+ L LS+N   G + +++ +  SL  L+L+ N  +G+IP       
Sbjct: 503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM---- 558

Query: 122 GLSVIDISDNQLQGPVPNS 140
                 I+ N + G     
Sbjct: 559 FKQSGKIAANFIAGKRYVY 577

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  119 bits (300), Expect = 2e-31
 Identities = 37/161 (22%), Positives = 70/161 (43%), Gaps = 22/161 (13%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSL------------- 48
           +L  L L  N  +G +P E+G  + L +LDL+ N FN ++P ++                
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574

Query: 49  ---------LKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESL 99
                     K  + + +  +F     ++L +L   +  +++    GG       N  S+
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634

Query: 100 EKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS 140
             L++S+N LSG IP     M  L ++++  N + G +P+ 
Sbjct: 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  112 bits (283), Expect = 4e-29
 Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 7/143 (4%)

Query: 2   SLTKLILRGNQLTGRLPTEIG-SFKELEYLDLSANRFNNSVPKSL---GSLLKLHYLSLS 57
            L  L +  N L        G     LE LDLSAN  + +            +L +L++S
Sbjct: 127 GLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS 186

Query: 58  NNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCF 117
            N+   ++   + + V L  LD+S N     +   + +  +L+ L++S N LSG      
Sbjct: 187 GNKISGDVD--VSRCVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAI 243

Query: 118 EGMHGLSVIDISDNQLQGPVPNS 140
                L +++IS NQ  GP+P  
Sbjct: 244 STCTELKLLNISSNQFVGPIPPL 266

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  109 bits (275), Expect = 5e-28
 Identities = 38/162 (23%), Positives = 58/162 (35%), Gaps = 22/162 (13%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
            +L  LIL  N LTG +P+ + +   L ++ LS NR    +PK +G L  L  L LSNN 
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNL---------------- 104
           F   +P EL     L  LDL+ N   G + + +         N                 
Sbjct: 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK 585

Query: 105 ------SHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS 140
                 +     G        +   +  +I+     G    +
Sbjct: 586 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  107 bits (270), Expect = 2e-27
 Identities = 39/147 (26%), Positives = 59/147 (40%), Gaps = 10/147 (6%)

Query: 1   NSLTKLILRGNQLT---GRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLS 57
           + +T + L    L      + + + S   LE L LS +  N SV         L  L LS
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLS 108

Query: 58  NNQFVQELP--KELEKLVQLSELDLSHNFLGGEL-LSQICNMESLEKLNLSHNNLSGSIP 114
            N     +     L     L  L++S N L     +S    + SLE L+LS N++SG+  
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV 168

Query: 115 NCFEGMHGLS---VIDISDNQLQGPVP 138
             +    G      + IS N++ G V 
Sbjct: 169 VGWVLSDGCGELKHLAISGNKISGDVD 195

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 68.4 bits (168), Expect = 9e-14
 Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 3/103 (2%)

Query: 44  SLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLN 103
               +  +   S   N     +   L  L  L  L LS++ + G  +S      SL  L+
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGS-VSGFKCSASLTSLD 106

Query: 104 LSHNNLSGSIPNCFE--GMHGLSVIDISDNQLQGPVPNSTAFR 144
           LS N+LSG +          GL  +++S N L  P   S   +
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK 149

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 4/74 (5%)

Query: 75  LSELDLSHNFL---GGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDN 131
           ++ +DLS   L      + S + ++  LE L LS+++++GS+   F+    L+ +D+S N
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRN 110

Query: 132 QLQGPVPNSTAFRN 145
            L GPV   T+  +
Sbjct: 111 SLSGPVTTLTSLGS 124

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  111 bits (279), Expect = 1e-28
 Identities = 37/141 (26%), Positives = 56/141 (39%), Gaps = 1/141 (0%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
            S   L L  N L         SF EL+ LDLS          +  SL  L  L L+ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNL-SGSIPNCFEG 119
                      L  L +L      L       I ++++L++LN++HN + S  +P  F  
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 120 MHGLSVIDISDNQLQGPVPNS 140
           +  L  +D+S N++Q      
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTD 168

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  110 bits (278), Expect = 1e-28
 Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 2/142 (1%)

Query: 1   NSLTKLILRGNQLTGRLPTEI-GSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNN 59
             L  L  + + L       +  S + L YLD+S      +       L  L  L ++ N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 60  QFVQELPKE-LEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFE 118
            F +    +   +L  L+ LDLS   L     +   ++ SL+ LN+SHNN        ++
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 515

Query: 119 GMHGLSVIDISDNQLQGPVPNS 140
            ++ L V+D S N +       
Sbjct: 516 CLNSLQVLDYSLNHIMTSKKQE 537

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  106 bits (267), Expect = 4e-27
 Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 2/136 (1%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSV-PKSLGSLLKLHYLSLSNNQ 60
           +L  L +                  LE L ++ N F  +  P     L  L +L LS  Q
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
             Q  P     L  L  L++SHN            + SL+ L+ S N++  S     +  
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 541

Query: 121 HG-LSVIDISDNQLQG 135
              L+ ++++ N    
Sbjct: 542 PSSLAFLNLTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 99.3 bits (248), Expect = 2e-24
 Identities = 30/144 (20%), Positives = 52/144 (36%), Gaps = 5/144 (3%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
            L  L L   ++         S   L  L L+ N   +    +   L  L  L       
Sbjct: 53  ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112

Query: 62  VQELPKELEKLVQLSELDLSHNFL-GGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
                  +  L  L EL+++HN +   +L     N+ +LE L+LS N +          +
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

Query: 121 HGLSV----IDISDNQLQGPVPNS 140
           H + +    +D+S N +    P +
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGA 196

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 85.9 bits (213), Expect = 8e-20
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 2/116 (1%)

Query: 2   SLTKLILRGNQLTGRLPTEI-GSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
           SL  L + GN        +I    + L +LDLS  +     P +  SL  L  L++S+N 
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 505

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNME-SLEKLNLSHNNLSGSIPN 115
           F        + L  L  LD S N +      ++ +   SL  LNL+ N+ + +  +
Sbjct: 506 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 561

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 85.1 bits (211), Expect = 1e-19
 Identities = 36/143 (25%), Positives = 52/143 (36%), Gaps = 9/143 (6%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
                L L   +     PT     K L+ L  ++N+  N    S   L  L +L LS N 
Sbjct: 304 FGWQHLELVNCKFGQ-FPT--LKLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNG 358

Query: 61  --FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIP-NCF 117
             F     +       L  LDLS N +   + S    +E LE L+  H+NL      + F
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417

Query: 118 EGMHGLSVIDISDNQLQGPVPNS 140
             +  L  +DIS    +      
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGI 440

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 72.4 bits (178), Expect = 3e-15
 Identities = 30/154 (19%), Positives = 53/154 (34%), Gaps = 15/154 (9%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEY----LDLSANRFNNSVPKSLGSLLKLHYLSL 56
            +L  L L  N++     T++    ++      LDLS N   N +       ++LH L+L
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLHKLTL 207

Query: 57  SNNQFVQELPKE-LEKLVQLSELDLSHNFLGGE---LLSQICNMESLEKLNLSHNNLS-- 110
            NN     + K  ++ L  L    L       E          +E L  L +    L+  
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

Query: 111 ----GSIPNCFEGMHGLSVIDISDNQLQGPVPNS 140
                 I + F  +  +S   +    ++     S
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS 301

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.7 bits (166), Expect = 1e-13
 Identities = 27/175 (15%), Positives = 46/175 (26%), Gaps = 31/175 (17%)

Query: 2   SLTKLILRGNQLTGRLPTE-IGSFKELEYLDLSANRF---NNSVPKSLGSLLKLHYLSLS 57
            L KL LR N  +  +    I     LE   L    F    N       +L  L  L++ 
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 58  NNQ------FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLS- 110
             +      ++ ++      L  +S   L    +    +         + L L +     
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQ 318

Query: 111 ------------------GSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAP 147
                             G        +  L  +D+S N L      S +     
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  108 bits (272), Expect = 1e-27
 Identities = 35/145 (24%), Positives = 58/145 (40%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
            ++T L L  NQL          + +L  LD+  N  +   P+    L  L  L+L +N+
Sbjct: 25  TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
             Q   K       L+EL L  N +     +     ++L  L+LSHN LS +       +
Sbjct: 85  LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 144

Query: 121 HGLSVIDISDNQLQGPVPNSTAFRN 145
             L  + +S+N++Q           
Sbjct: 145 ENLQELLLSNNKIQALKSEELDIFA 169

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  107 bits (268), Expect = 3e-27
 Identities = 37/160 (23%), Positives = 62/160 (38%), Gaps = 5/160 (3%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKS-LGSLLKLHYLSLSNN 59
           + L  L L  N+++            LE LDL  N     +       L  +  + LS N
Sbjct: 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440

Query: 60  QFVQELPKELEKLVQLSELDLSHNFLGG--ELLSQICNMESLEKLNLSHNNLSGSIPNCF 117
           +++Q        +  L  L L    L       S    + +L  L+LS+NN++    +  
Sbjct: 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 500

Query: 118 EGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKEL 157
           EG+  L ++D+  N L     +  A    P+  L+G   L
Sbjct: 501 EGLEKLEILDLQHNNLARLWKH--ANPGGPIYFLKGLSHL 538

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  104 bits (261), Expect = 3e-26
 Identities = 39/153 (25%), Positives = 58/153 (37%), Gaps = 9/153 (5%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANR--------FNNSVPKSLGSLLKLHY 53
           +LT L L  N +       +   ++LE LDL  N                 L  L  LH 
Sbjct: 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540

Query: 54  LSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSI 113
           L+L +N F +   +  + L +L  +DL  N L     S   N  SL+ LNL  N ++   
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600

Query: 114 PNCFE-GMHGLSVIDISDNQLQGPVPNSTAFRN 145
              F      L+ +D+  N       +   F N
Sbjct: 601 KKVFGPAFRNLTELDMRFNPFDCTCESIAWFVN 633

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  103 bits (260), Expect = 4e-26
 Identities = 32/149 (21%), Positives = 58/149 (38%), Gaps = 5/149 (3%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLG----SLLKLHYLSLS 57
            L  L +  N + G           L+YL LS +  +     +      +   LH L+L+
Sbjct: 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT 389

Query: 58  NNQFVQELPKELEKLVQLSELDLSHNFLGGEL-LSQICNMESLEKLNLSHNNLSGSIPNC 116
            N+  +        L  L  LDL  N +G EL   +   +E++ ++ LS+N       N 
Sbjct: 390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS 449

Query: 117 FEGMHGLSVIDISDNQLQGPVPNSTAFRN 145
           F  +  L  + +    L+    + + F+ 
Sbjct: 450 FALVPSLQRLMLRRVALKNVDSSPSPFQP 478

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  102 bits (256), Expect = 2e-25
 Identities = 35/141 (24%), Positives = 51/141 (36%), Gaps = 2/141 (1%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
            L  L L+ N+L+            L  L L +N               L  L LS+N  
Sbjct: 74  MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 133

Query: 62  VQELPKELEKLVQLSELDLSHNFLGG--ELLSQICNMESLEKLNLSHNNLSGSIPNCFEG 119
                    +L  L EL LS+N +         I    SL+KL LS N +    P CF  
Sbjct: 134 SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA 193

Query: 120 MHGLSVIDISDNQLQGPVPNS 140
           +  L  + +++ QL   +   
Sbjct: 194 IGRLFGLFLNNVQLGPSLTEK 214

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  101 bits (254), Expect = 2e-25
 Identities = 38/163 (23%), Positives = 58/163 (35%), Gaps = 11/163 (6%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFK--ELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSN 58
            S+  L L  +QL+    T     K   L  LDLS N  N     S   L +L Y  L  
Sbjct: 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281

Query: 59  NQFVQELPKELEKLVQLSELDLSHNFLGGEL---------LSQICNMESLEKLNLSHNNL 109
           N         L  L  +  L+L  +F    +               ++ LE LN+  N++
Sbjct: 282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341

Query: 110 SGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALE 152
            G   N F G+  L  + +S++        +  F +     L 
Sbjct: 342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLH 384

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 99.3 bits (248), Expect = 2e-24
 Identities = 35/141 (24%), Positives = 56/141 (39%), Gaps = 2/141 (1%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
            LT L +  N ++   P        L+ L+L  N  +    K+      L  L L +N  
Sbjct: 50  QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 109

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
            +       K   L  LDLSHN L    L     +E+L++L LS+N +        +   
Sbjct: 110 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169

Query: 122 G--LSVIDISDNQLQGPVPNS 140
              L  +++S NQ++   P  
Sbjct: 170 NSSLKKLELSSNQIKEFSPGC 190

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 98.5 bits (246), Expect = 3e-24
 Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 3/139 (2%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           S         +LT ++P ++     +  L+L+ N+       +     +L  L +  N  
Sbjct: 5   SHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
            +  P+  +KL  L  L+L HN L            +L +L+L  N++     N F    
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 122 GLSVIDISDNQLQGPVPNS 140
            L  +D+S N L      +
Sbjct: 122 NLITLDLSHNGLSSTKLGT 140

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 97.8 bits (244), Expect = 5e-24
 Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 5/143 (3%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLG---SLLKLHYLSLSN 58
           SL KL L  NQ+    P    +   L  L L+  +   S+ + L    +   +  LSLSN
Sbjct: 172 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 231

Query: 59  NQFVQELPKELE--KLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNC 116
           +Q            K   L+ LDLS+N L          +  LE   L +NN+     + 
Sbjct: 232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS 291

Query: 117 FEGMHGLSVIDISDNQLQGPVPN 139
             G+  +  +++  +  +  +  
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISL 314

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 95.8 bits (239), Expect = 3e-23
 Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 7/146 (4%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSL--LKLHYLSLSNN 59
           +L  L L  N L+          + L+ L LS N+      + L       L  L LS+N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181

Query: 60  QFVQELPKELEKLVQLSELDLSHNFLGGELLSQIC---NMESLEKLNLSHNNLSGSIPNC 116
           Q  +  P     + +L  L L++  LG  L  ++C      S+  L+LS++ LS +    
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

Query: 117 FEGMHG--LSVIDISDNQLQGPVPNS 140
           F G+    L+++D+S N L     +S
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNVVGNDS 267

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 11/76 (14%)

Query: 73  VQLSELDLSHNFLG---GELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDIS 129
           V     D SH  L     +L +      ++  LNL+HN L       F     L+ +D+ 
Sbjct: 4   VSHEVADCSHLKLTQVPDDLPT------NITVLNLTHNQLRRLPAANFTRYSQLTSLDVG 57

Query: 130 DNQLQGPVPNSTAFRN 145
            N +    P     + 
Sbjct: 58  FNTISKLEPE--LCQK 71

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  103 bits (259), Expect = 5e-26
 Identities = 32/155 (20%), Positives = 58/155 (37%), Gaps = 15/155 (9%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFN---------NSVPKSLGSLLKLH 52
            LT + L       +LP  +    EL+ L+++ NR             +     +  K+ 
Sbjct: 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551

Query: 53  YLSLSNNQFVQELPKE--LEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLS 110
              +  N   +E P    L+K+V+L  LD  HN +    L        L  L L +N + 
Sbjct: 552 IFYMGYNNL-EEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIE 608

Query: 111 GSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRN 145
               +       +  +  S N+L+  +PN    ++
Sbjct: 609 EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKS 642

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =   99 bits (249), Expect = 1e-24
 Identities = 34/177 (19%), Positives = 65/177 (36%), Gaps = 23/177 (12%)

Query: 2   SLTKLILRGNQLT-------GRLPTEIGSFKELEYLDLSANRFNNSVPKSL--GSLLKLH 52
            ++ +IL  N +T               +   L  +DL  N+   S+       +L  L 
Sbjct: 698 PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLS 756

Query: 53  YLSLSNNQFVQELPKELEKLVQLSELDLSH------NFLGGELLSQICNMESLEKLNLSH 106
            + +S N F    P +     QL    + H      N +  +  + I    SL +L +  
Sbjct: 757 NMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS 815

Query: 107 NNLSGSIPNCFEGMHGLSVIDISDNQL-QGPVPNSTAFRNAPVEALEGNK--ELCGG 160
           N++   +    +    L ++DI+DN      V +   +  A +  L  +K  ++ G 
Sbjct: 816 NDIR-KVDE--KLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGC 869

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 92.2 bits (229), Expect = 5e-22
 Identities = 18/153 (11%), Positives = 53/153 (34%), Gaps = 16/153 (10%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
             T++    N++T  +   I    +L+ +  + + F           +     +    + 
Sbjct: 426 KDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFT-----YDNIAVDWEDANSDYAKQ 479

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSG---------S 112
            +        L  L++++L +     +L   + ++  L+ LN++ N              
Sbjct: 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539

Query: 113 IPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRN 145
           + +  +    + +  +  N L+   P S + + 
Sbjct: 540 LADDEDTGPKIQIFYMGYNNLEE-FPASASLQK 571

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 90.3 bits (224), Expect = 2e-21
 Identities = 30/149 (20%), Positives = 56/149 (37%), Gaps = 13/149 (8%)

Query: 1   NSLTKLILRGNQLTGRLPTE--IGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSN 58
             +    +  N L    P    +    +L  LD   N+      ++ G+ +KL  L L  
Sbjct: 548 PKIQIFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDY 604

Query: 59  NQFVQELPKEL-EKLVQLSELDLSHNFLGG-ELLSQICNMESLEKLNLSHNNLSGSIPNC 116
           NQ  +E+P++      Q+  L  SHN L     +    ++  +  ++ S+N +     N 
Sbjct: 605 NQI-EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663

Query: 117 FEGMHG-----LSVIDISDNQLQGPVPNS 140
              M        S + +S N++Q      
Sbjct: 664 SCSMDDYKGINASTVTLSYNEIQKFPTEL 692

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 89.9 bits (223), Expect = 3e-21
 Identities = 30/162 (18%), Positives = 62/162 (38%), Gaps = 20/162 (12%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSF-KELEYLDLSANRFNNSVPK--SLGSLLKLHYLSLSN 58
            LT L L  NQ+   +P +  +F  ++E L  S N+    +P   +  S+  +  +  S 
Sbjct: 596 KLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSY 653

Query: 59  NQFVQELPKELE------KLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLS-- 110
           N+      + +       K +  S + LS+N +             +  + LS+N ++  
Sbjct: 654 NKI-GSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSI 712

Query: 111 -----GSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAP 147
                      ++  + L+ ID+  N+L   + +       P
Sbjct: 713 PENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLP 753

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 89.5 bits (222), Expect = 5e-21
 Identities = 28/151 (18%), Positives = 53/151 (35%), Gaps = 18/151 (11%)

Query: 1   NSLTKLILRGNQLTGRLP--TEIGSFKELEYLDLSANRF-----NNSVPKSLGSLLKLHY 53
           + +  L    N+L   +P      S   +  +D S N+      N S        +    
Sbjct: 619 DQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST 677

Query: 54  LSLSNNQFVQELPKELEKLVQLSELDLSHNFLG-------GELLSQICNMESLEKLNLSH 106
           ++LS N+  +   +       +S + LS+N +                N   L  ++L  
Sbjct: 678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737

Query: 107 NNLSGSIPN--CFEGMHGLSVIDISDNQLQG 135
           N L+ S+ +      +  LS +D+S N    
Sbjct: 738 NKLT-SLSDDFRATTLPYLSNMDVSYNCFSS 767

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 81.8 bits (202), Expect = 2e-18
 Identities = 20/154 (12%), Positives = 48/154 (31%), Gaps = 13/154 (8%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNN------SVPKSLGSLLKLHYLS 55
            L    L  + +      E+   K+   + L   +  N       + K++  L KL  + 
Sbjct: 397 RLNLSDLLQDAINRNP--EMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIY 454

Query: 56  LSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPN 115
            +N+ F           V   + +  +            N++ L  + L +      +P+
Sbjct: 455 FANSPF-----TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD 509

Query: 116 CFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVE 149
               +  L  ++I+ N+          +     +
Sbjct: 510 FLYDLPELQSLNIACNRGISAAQLKADWTRLADD 543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 77.2 bits (190), Expect = 9e-17
 Identities = 23/145 (15%), Positives = 48/145 (33%), Gaps = 9/145 (6%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
             +T L L G    GR+P  IG   EL+ L    +    S        L         ++
Sbjct: 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHR 382

Query: 61  FVQELPKE-LEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSG------SI 113
                 K  L+   +L+  DL  + +      ++  ++   +++L    +         I
Sbjct: 383 IRMHYKKMFLDYDQRLNLSDLLQDAINR--NPEMKPIKKDSRISLKDTQIGNLTNRITFI 440

Query: 114 PNCFEGMHGLSVIDISDNQLQGPVP 138
               + +  L +I  +++       
Sbjct: 441 SKAIQRLTKLQIIYFANSPFTYDNI 465

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.8 bits (137), Expect = 8e-10
 Identities = 11/105 (10%), Positives = 34/105 (32%), Gaps = 1/105 (0%)

Query: 30  LDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGEL 89
            +   + + +     L +  ++  LSL+       +P  + +L +L  L    +      
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 90  LSQICNMESLEKLNLSHNNLSGSIPNCF-EGMHGLSVIDISDNQL 133
                   + +      + +       F +    L++ D+  + +
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAI 408

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.3 bits (120), Expect = 1e-07
 Identities = 8/85 (9%), Positives = 31/85 (36%)

Query: 68  ELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVID 127
           +L+   +++ L L+     G +   I  +  L+ L+   ++ + S     +      + +
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377

Query: 128 ISDNQLQGPVPNSTAFRNAPVEALE 152
              ++++          +  +   +
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSD 402

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.0 bits (109), Expect = 4e-06
 Identities = 10/81 (12%), Positives = 24/81 (29%)

Query: 77  ELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGP 136
             +   +  G +    + N   +  L+L+     G +P+    +  L V+    +     
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 137 VPNSTAFRNAPVEALEGNKEL 157
                     P  + E    +
Sbjct: 363 GRLFGDEELTPDMSEERKHRI 383

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  102 bits (257), Expect = 1e-25
 Identities = 28/153 (18%), Positives = 62/153 (40%), Gaps = 11/153 (7%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRF--------NNSVPKSLGSLLKLHY 53
            LT + +       +LPT + +  E++ ++++ NR         +           K+  
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 54  LSLSNNQFVQ-ELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGS 112
           + +  N      +   L+K+ +L  L+  +N L G  L    +   L  LNL++N ++  
Sbjct: 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEI 368

Query: 113 IPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRN 145
             N       +  +  + N+L+  +PN    ++
Sbjct: 369 PANFCGFTEQVENLSFAHNKLKY-IPNIFDAKS 400

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  100 bits (251), Expect = 6e-25
 Identities = 24/146 (16%), Positives = 56/146 (38%), Gaps = 14/146 (9%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
            L +  +  +        E    +  EY          +      +L  L  + + N   
Sbjct: 207 KLRQFYMGNSPFVAENICEAWENENSEYAQQY-----KTEDLKWDNLKDLTDVEVYNCPN 261

Query: 62  VQELPKELEKLVQLSELDLSHNFL--------GGELLSQICNMESLEKLNLSHNNL-SGS 112
           + +LP  L+ L ++  ++++ N            + L+     E ++ + + +NNL +  
Sbjct: 262 LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP 321

Query: 113 IPNCFEGMHGLSVIDISDNQLQGPVP 138
           +    + M  L +++   NQL+G +P
Sbjct: 322 VETSLQKMKKLGMLECLYNQLEGKLP 347

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 98.6 bits (246), Expect = 3e-24
 Identities = 31/150 (20%), Positives = 61/150 (40%), Gaps = 12/150 (8%)

Query: 1   NSLTKLILRGNQL-TGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNN 59
             +  + +  N L T  + T +   K+L  L+   N+       + GS +KL  L+L+ N
Sbjct: 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL-EGKLPAFGSEIKLASLNLAYN 363

Query: 60  QFVQELPKEL-EKLVQLSELDLSHNFLGG-ELLSQICNMESLEKLNLSHNNLSGSIPNCF 117
           Q   E+P        Q+  L  +HN L     +    ++  +  ++ S+N +       F
Sbjct: 364 QI-TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422

Query: 118 EGMHG-------LSVIDISDNQLQGPVPNS 140
           + +         +S I++S+NQ+       
Sbjct: 423 DPLDPTPFKGINVSSINLSNNQISKFPKEL 452

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 97.4 bits (243), Expect = 8e-24
 Identities = 32/155 (20%), Positives = 51/155 (32%), Gaps = 20/155 (12%)

Query: 1   NSLTKLILRGNQLTG-------RLPTEIGSFKELEYLDLSANRFNNSVPKSL--GSLLKL 51
           + L+ + L GN LT               +   L  +DL  N+    +       +L  L
Sbjct: 457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYL 515

Query: 52  HYLSLSNNQFVQELPKELEKLVQLSEL------DLSHNFLGGELLSQICNMESLEKLNLS 105
             + LS N F  + P +      L         D   N    E    I    SL +L + 
Sbjct: 516 VGIDLSYNSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574

Query: 106 HNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS 140
            N++   +         +SV+DI DN       + 
Sbjct: 575 SNDIR-KVNEKI--TPNISVLDIKDNPNISIDLSY 606

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 97.4 bits (243), Expect = 9e-24
 Identities = 31/160 (19%), Positives = 57/160 (35%), Gaps = 18/160 (11%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSL--GSLLKLHYLSLSNN 59
            L  L L  NQ+T       G  +++E L  + N+    +P      S+  +  +  S N
Sbjct: 354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYN 412

Query: 60  QF-------VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSG- 111
           +           L     K + +S ++LS+N +             L  +NL  N L+  
Sbjct: 413 EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472

Query: 112 ------SIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRN 145
                      F+  + L+ ID+  N+L   + +      
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATT 511

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 96.6 bits (241), Expect = 2e-23
 Identities = 28/152 (18%), Positives = 52/152 (34%), Gaps = 18/152 (11%)

Query: 1   NSLTKLILRGNQLTGRLP--TEIGSFKELEYLDLSANRFN-------NSVPKSLGSLLKL 51
             +  L    N+L   +P   +  S   +  +D S N          + +  +    + +
Sbjct: 377 EQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435

Query: 52  HYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGG-------ELLSQICNMESLEKLNL 104
             ++LSNNQ  +   +       LS ++L  N L         +      N   L  ++L
Sbjct: 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495

Query: 105 SHNNLSGSIPNCFEG-MHGLSVIDISDNQLQG 135
             N L+    +     +  L  ID+S N    
Sbjct: 496 RFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK 527

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 92.8 bits (231), Expect = 3e-22
 Identities = 20/145 (13%), Positives = 45/145 (31%), Gaps = 7/145 (4%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRF----NNSVPKSLGSLLKLHYLSLS 57
            +T L L G   +GR+P  IG   ELE L L ++          PK + + +        
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 58  NNQFVQELPKELEKLV--QLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPN 115
              + +       +     L +  ++ +     +           ++    NN++  +  
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSK 200

Query: 116 CFEGMHGLSVIDISDNQLQGPVPNS 140
               +  L    + ++         
Sbjct: 201 AVMRLTKLRQFYMGNSPFVAENICE 225

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 87.8 bits (218), Expect = 2e-20
 Identities = 18/144 (12%), Positives = 48/144 (33%), Gaps = 6/144 (4%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
            L K  +  +     +        +   +   +N     V K++  L KL    + N+ F
Sbjct: 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPF 218

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
           V E   E  +       +  +         +  N++ L  + + +      +P   + + 
Sbjct: 219 VAENICEAWEN-----ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273

Query: 122 GLSVIDISDNQLQGPVPNSTAFRN 145
            + +I+++ N+          ++ 
Sbjct: 274 EMQLINVACNRGISGEQLKDDWQA 297

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 87.0 bits (216), Expect = 3e-20
 Identities = 26/141 (18%), Positives = 54/141 (38%), Gaps = 13/141 (9%)

Query: 2   SLTKLILRGNQLTGRLPTEI--GSFKELEYLDLSANRFNNSVPKSLGSLLKL------HY 53
            LT + LR N+LT  L  +    +   L  +DLS N F+   P    +   L      + 
Sbjct: 489 LLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFS-KFPTQPLNSSTLKGFGIRNQ 546

Query: 54  LSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSI 113
                N+ ++E P+ +     L++L +  N +   +  +I    ++  L++  N      
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISID 603

Query: 114 PNCFEGMHGLSVIDISDNQLQ 134
            +         +  +  ++ Q
Sbjct: 604 LSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 85.1 bits (211), Expect = 2e-19
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 11/121 (9%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYL------DLSANRFNNSVPKSLGSLLKLHYLS 55
            L  + L  N  +   PT+  +   L+        D   NR     P+ +     L  L 
Sbjct: 514 YLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ 572

Query: 56  LSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPN 115
           + +N   +++ +++     +S LD+  N      LS +C         L ++     I  
Sbjct: 573 IGSNDI-RKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ-DIRG 628

Query: 116 C 116
           C
Sbjct: 629 C 629

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.8 bits (174), Expect = 1e-14
 Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 6/122 (4%)

Query: 20  EIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF----VQELPKELEKLVQL 75
            + S   +  L L     +  VP ++G L +L  L+L ++          PK +   +  
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 76  SELDLSHNFLGGELLSQI--CNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQL 133
            +            +      +   L K  ++ +    SI          + I    N +
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 134 QG 135
             
Sbjct: 196 TF 197

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.8 bits (161), Expect = 7e-13
 Identities = 19/116 (16%), Positives = 36/116 (31%), Gaps = 6/116 (5%)

Query: 31  DLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGG--- 87
           +   + +      SL S  ++  LSL        +P  + +L +L  L L  +       
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 88  -ELLSQICNMESLEKLNLSHNNLSGSIPN--CFEGMHGLSVIDISDNQLQGPVPNS 140
                 I    S E+      +   +  +    E    L    I+ +  Q  +  S
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS 178

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 99.0 bits (247), Expect = 2e-24
 Identities = 33/141 (23%), Positives = 53/141 (37%), Gaps = 2/141 (1%)

Query: 2   SLTKLILRGNQLTGRLPTE-IGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
            L  L  + + L          S ++L YLD+S              L  L+ L ++ N 
Sbjct: 400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459

Query: 61  FVQELPKE-LEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEG 119
           F              L+ LDLS   L          +  L+ LN+SHNNL     + +  
Sbjct: 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519

Query: 120 MHGLSVIDISDNQLQGPVPNS 140
           ++ LS +D S N+++      
Sbjct: 520 LYSLSTLDCSFNRIETSKGIL 540

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 99.0 bits (247), Expect = 2e-24
 Identities = 37/141 (26%), Positives = 55/141 (39%), Gaps = 1/141 (0%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
           +S   + L  N L         +F EL++LDLS         K+   L  L  L L+ N 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSG-SIPNCFEG 119
                P     L  L  L      L       I  + +L+KLN++HN +    +P  F  
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151

Query: 120 MHGLSVIDISDNQLQGPVPNS 140
           +  L  +D+S N +Q    N 
Sbjct: 152 LTNLVHVDLSYNYIQTITVND 172

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 96.3 bits (240), Expect = 2e-23
 Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 1/133 (0%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKS-LGSLLKLHYLSLSNNQ 60
            L  L +                  L  L ++ N F ++   +   +   L +L LS  Q
Sbjct: 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
             Q      + L +L  L++SHN L     S    + SL  L+ S N +  S        
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFP 544

Query: 121 HGLSVIDISDNQL 133
             L+  ++++N +
Sbjct: 545 KSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 91.6 bits (228), Expect = 8e-22
 Identities = 28/142 (19%), Positives = 49/142 (34%), Gaps = 4/142 (2%)

Query: 4   TKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQ 63
                   +L+ ++P +I      + +DLS N        S  +  +L +L LS  +   
Sbjct: 14  ITYQCMDQKLS-KVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET 70

Query: 64  ELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGL 123
              K    L  LS L L+ N +          + SLE L      L+         +  L
Sbjct: 71  IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130

Query: 124 SVIDISDNQLQGPVPNSTAFRN 145
             ++++ N +         F N
Sbjct: 131 KKLNVAHNFIHS-CKLPAYFSN 151

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 90.9 bits (226), Expect = 1e-21
 Identities = 36/150 (24%), Positives = 59/150 (39%), Gaps = 7/150 (4%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSL--GSLLKLHYLSLSN 58
             L  L L  N+ +  +  +  +   L YLDLS N  + S   S        L +L LS 
Sbjct: 328 PFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF 385

Query: 59  NQFVQELPKELEKLVQLSELDLSHNFLGGEL-LSQICNMESLEKLNLSHNNLSGSIPNCF 117
           N     +      L +L  LD  H+ L      S   ++E L  L++S+ N        F
Sbjct: 386 NGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF 444

Query: 118 EGMHGLSVIDISDNQLQGPVPNSTAFRNAP 147
            G+  L+ + ++ N  +    ++  F N  
Sbjct: 445 LGLTSLNTLKMAGNSFKDNTLSN-VFANTT 473

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 86.6 bits (215), Expect = 4e-20
 Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 5/138 (3%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
            L  L L   ++             L  L L+ N   +  P S   L  L  L     + 
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116

Query: 62  VQELPKELEKLVQLSELDLSHNFLGG-ELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
                  + +L+ L +L+++HNF+   +L +   N+ +L  ++LS+N +     N  + +
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176

Query: 121 HGLS----VIDISDNQLQ 134
                    +D+S N + 
Sbjct: 177 RENPQVNLSLDMSLNPID 194

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 82.0 bits (203), Expect = 1e-18
 Identities = 32/143 (22%), Positives = 48/143 (33%), Gaps = 9/143 (6%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
                L +   QL             L+ L L+ N+   S+     +L  L YL LS N 
Sbjct: 307 FKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNA 361

Query: 61  --FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIP-NCF 117
             F             L  LDLS N     + +    +E L+ L+  H+ L      + F
Sbjct: 362 LSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAF 420

Query: 118 EGMHGLSVIDISDNQLQGPVPNS 140
             +  L  +DIS    +      
Sbjct: 421 LSLEKLLYLDISYTNTKIDFDGI 443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 74.7 bits (184), Expect = 6e-16
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 1/111 (0%)

Query: 1   NSLTKLILRGNQLTGRLPTEI-GSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNN 59
            SL  L + GN       + +  +   L +LDLS  +          +L +L  L++S+N
Sbjct: 448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507

Query: 60  QFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLS 110
             +        +L  LS LD S N +           +SL   NL++N+++
Sbjct: 508 NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 74.3 bits (183), Expect = 6e-16
 Identities = 31/156 (19%), Positives = 55/156 (35%), Gaps = 13/156 (8%)

Query: 2   SLTKLILRGNQLTG-RLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLH----YLSL 56
           +L KL +  N +   +LP    +   L ++DLS N         L  L +       L +
Sbjct: 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188

Query: 57  SNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQIC-NMESLEKLNLSHN------NL 109
           S N     +  +  + ++L EL L  NF    ++     N+  L    L         NL
Sbjct: 189 SLNPI-DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247

Query: 110 SGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRN 145
               P+  EG+  +++ +           +   F  
Sbjct: 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHC 283

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 69.7 bits (171), Expect = 3e-14
 Identities = 28/148 (18%), Positives = 49/148 (33%), Gaps = 12/148 (8%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           ++ +  L           +      +  + L+         + +    K   LS+   Q 
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQL 319

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFE--G 119
            ++ P     L  L  L L+ N     +  +   + SL  L+LS N LS S    +   G
Sbjct: 320 -KQFPT--LDLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLG 374

Query: 120 MHGLSVIDISDNQLQGPVPNSTAFRNAP 147
            + L  +D+S N        S  F    
Sbjct: 375 TNSLRHLDLSFNGAIIM---SANFMGLE 399

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.1 bits (159), Expect = 1e-12
 Identities = 23/144 (15%), Positives = 52/144 (36%), Gaps = 12/144 (8%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPK-SLGSLLKLHYLSLSNN 59
                L +  N +   +  +     +L  L L  N  ++++ K  L +L  LH   L   
Sbjct: 181 QVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239

Query: 60  QFVQEL------PKELEKLVQLS--ELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSG 111
           +F  E       P  +E L  ++  E  L++     + + +   + ++  ++L+  ++  
Sbjct: 240 EFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY 299

Query: 112 SIPNCFEGMHGLSVIDISDNQLQG 135
                         + I   QL+ 
Sbjct: 300 LEDVPK--HFKWQSLSIIRCQLKQ 321

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 98.9 bits (247), Expect = 2e-24
 Identities = 29/135 (21%), Positives = 45/135 (33%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
           NS   L    N L     T       L +LDL+  +       +  S  +L  L L+ N 
Sbjct: 33  NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
            +      L     L  L      +       + N ++LE L L  N++S          
Sbjct: 93  LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152

Query: 121 HGLSVIDISDNQLQG 135
             L V+D  +N +  
Sbjct: 153 EKLKVLDFQNNAIHY 167

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 94.7 bits (236), Expect = 7e-23
 Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 4/144 (2%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKS-LGSLLKLHYLSLSNN 59
           + L  L L  N+             +LE LDL+  R      +S   +L  L  L+LS++
Sbjct: 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435

Query: 60  QFVQELPKELEKLVQLSELDLSHNFLGG---ELLSQICNMESLEKLNLSHNNLSGSIPNC 116
                  +  + L  L  L+L  N       +  + +  +  LE L LS  +LS    + 
Sbjct: 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495

Query: 117 FEGMHGLSVIDISDNQLQGPVPNS 140
           F  +  ++ +D+S N+L      +
Sbjct: 496 FTSLKMMNHVDLSHNRLTSSSIEA 519

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 94.3 bits (235), Expect = 8e-23
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 4/138 (2%)

Query: 2   SLTKLILRGNQLTGRLPTE-IGSFKELEYLDLSANRFNNS--VPKSLGSLLKLHYLSLSN 58
           SLT L ++GN     L T  + + + L  LDLS +    S      L +L  L  L+LS 
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385

Query: 59  NQFVQELPKELEKLVQLSELDLSHNFLGG-ELLSQICNMESLEKLNLSHNNLSGSIPNCF 117
           N+ +    +  ++  QL  LDL+   L   +  S   N+  L+ LNLSH+ L  S    F
Sbjct: 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445

Query: 118 EGMHGLSVIDISDNQLQG 135
           +G+  L  +++  N    
Sbjct: 446 DGLPALQHLNLQGNHFPK 463

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 93.2 bits (232), Expect = 2e-22
 Identities = 32/172 (18%), Positives = 56/172 (32%), Gaps = 2/172 (1%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           +LT L L   Q+         S   L+ L L+AN        +L     L +L       
Sbjct: 58  NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGI 117

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
                  L     L  L L  N +    L +    E L+ L+  +N +          + 
Sbjct: 118 SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177

Query: 122 GLSVI--DISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQPCKVFS 171
             + +  +++ N + G  P +            G + L    KG++   + S
Sbjct: 178 QATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQS 229

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 93.2 bits (232), Expect = 2e-22
 Identities = 36/150 (24%), Positives = 62/150 (41%), Gaps = 6/150 (4%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
            S+  + L+ +            F  L+ LDL+A    + +P  L  L  L  L LS N+
Sbjct: 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANK 312

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQ-ICNMESLEKLNLSHNNL--SGSIPNCF 117
           F             L+ L +  N    EL +  + N+E+L +L+LSH+++  S       
Sbjct: 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372

Query: 118 EGMHGLSVIDISDNQLQGPVPNSTAFRNAP 147
             +  L  +++S N+         AF+  P
Sbjct: 373 RNLSHLQSLNLSYNEPLSLKTE--AFKECP 400

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 90.5 bits (225), Expect = 2e-21
 Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 4/137 (2%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRF---NNSVPKSLGSLLKLHYLSLSN 58
            L  L L  + L             L++L+L  N F   N     SL +L +L  L LS 
Sbjct: 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485

Query: 59  NQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFE 118
                        L  ++ +DLSHN L    +  + +++ +  LNL+ N++S  +P+   
Sbjct: 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLP 544

Query: 119 GMHGLSVIDISDNQLQG 135
            +     I++  N L  
Sbjct: 545 ILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 88.1 bits (219), Expect = 1e-20
 Identities = 31/143 (21%), Positives = 62/143 (43%), Gaps = 5/143 (3%)

Query: 2   SLTKLILRGNQLTGRLP-TEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
            L  L L   +L  +   +   +   L+ L+LS +  + S  +    L  L +L+L  N 
Sbjct: 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460

Query: 61  FVQ---ELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCF 117
           F +   +    L+ L +L  L LS   L         +++ +  ++LSHN L+ S     
Sbjct: 461 FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL 520

Query: 118 EGMHGLSVIDISDNQLQGPVPNS 140
             + G+  ++++ N +   +P+ 
Sbjct: 521 SHLKGI-YLNLASNHISIILPSL 542

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 87.4 bits (217), Expect = 2e-20
 Identities = 21/133 (15%), Positives = 40/133 (30%), Gaps = 3/133 (2%)

Query: 8   LRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPK 67
                L   +P  +      E L+ S N        +   L+ L +L L+  Q       
Sbjct: 19  CENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHED 75

Query: 68  ELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVID 127
             +   +L  L L+ N L     + +   ++L+ L      +S            L  + 
Sbjct: 76  TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLY 135

Query: 128 ISDNQLQGPVPNS 140
           +  N +       
Sbjct: 136 LGSNHISSIKLPK 148

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 85.5 bits (212), Expect = 1e-19
 Identities = 26/144 (18%), Positives = 45/144 (31%), Gaps = 5/144 (3%)

Query: 2   SLTKLILRGNQLTGRLPTEIG--SFKELEYLDLSANRFNNSVPKSLGSL--LKLHYLSLS 57
               L   G Q    +   +   + + L           +  P     L  + +  ++L 
Sbjct: 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ 262

Query: 58  NNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCF 117
            + F             L ELDL+   L  EL S +  + +L+KL LS N          
Sbjct: 263 KHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISA 321

Query: 118 EGMHGLSVIDISDNQLQGPVPNST 141
                L+ + I  N  +  +    
Sbjct: 322 SNFPSLTHLSIKGNTKRLELGTGC 345

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 78.5 bits (194), Expect = 3e-17
 Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 9/140 (6%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELE--YLDLSANRFNNSVPKSLGSLLKLHYLSLSNN 59
            L  L  + N +      ++ S ++     L+L+ N     +            L+    
Sbjct: 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGT 212

Query: 60  QFVQELPKELE--KLVQLSELDLSHN---FLGGELLSQICNMESLEKLNLSHNNLSGSIP 114
           Q +  + K L+   +  L            +   +   +C M S+E +NL  +       
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM-SVESINLQKHYFFNISS 271

Query: 115 NCFEGMHGLSVIDISDNQLQ 134
           N F    GL  +D++   L 
Sbjct: 272 NTFHCFSGLQELDLTATHLS 291

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 74.3 bits (183), Expect = 7e-16
 Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 4/118 (3%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKE---LEYLDLSANRFNNSVPKSLGSLLKLHYLSLS 57
            +L  L L+GN        +  S +    LE L LS    ++    +  SL  ++++ LS
Sbjct: 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS 508

Query: 58  NNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPN 115
           +N+      + L  L  +  L+L+ N +   L S +  +     +NL  N L  +  N
Sbjct: 509 HNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 95.4 bits (238), Expect = 8e-24
 Identities = 37/144 (25%), Positives = 54/144 (37%), Gaps = 13/144 (9%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGS---------LLKL 51
             L  L L  N L   LP  I S   L  L + A      +P+ L S         L+ L
Sbjct: 127 AGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL 185

Query: 52  HYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSG 111
             L L      + LP  +  L  L  L + ++ L   L   I ++  LE+L+L       
Sbjct: 186 QSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPL-SALGPAIHHLPKLEELDLRGCTALR 243

Query: 112 SIPNCFEGMHGLSVIDISD-NQLQ 134
           + P  F G   L  + + D + L 
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLL 267

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 94.2 bits (235), Expect = 2e-23
 Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 2/132 (1%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           +L  L L    +   LP  I + + L+ L +  +  + ++  ++  L KL  L L     
Sbjct: 184 NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTA 241

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
           ++  P        L  L L        L   I  +  LEKL+L        +P+    + 
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301

Query: 122 GLSVIDISDNQL 133
              +I +  +  
Sbjct: 302 ANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 89.2 bits (222), Expect = 2e-21
 Identities = 30/148 (20%), Positives = 51/148 (34%), Gaps = 11/148 (7%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKE---------LEYLDLSANRFNNSVPKSLGSLLKLH 52
            L +L +R       LP  + S            L+ L L       S+P S+ +L  L 
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLK 209

Query: 53  YLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGS 112
            L + N+     L   +  L +L ELDL                  L++L L   +   +
Sbjct: 210 SLKIRNSPL-SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT 268

Query: 113 IPNCFEGMHGLSVIDISDNQLQGPVPNS 140
           +P     +  L  +D+        +P+ 
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSL 296

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 86.5 bits (215), Expect = 2e-20
 Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 1/115 (0%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
            +L  L +R + L+  L   I    +LE LDL       + P   G    L  L L +  
Sbjct: 206 QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPN 115
            +  LP ++ +L QL +LDL        L S I  + +   + +  +  +    +
Sbjct: 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 85.0 bits (211), Expect = 5e-20
 Identities = 23/145 (15%), Positives = 49/145 (33%), Gaps = 15/145 (10%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKE--LEYLDLSANRFNNSVPKSLGSLLKLHYLSLSN 58
           N+       G  L       +    +     L+L +       P     L  L ++++  
Sbjct: 56  NNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDA 113

Query: 59  NQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPN--- 115
                ELP  +++   L  L L+ N L   L + I ++  L +L++        +P    
Sbjct: 114 AGL-MELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLA 171

Query: 116 ------CFEGMHGLSVIDISDNQLQ 134
                   +G+  L  + +    ++
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIR 196

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 73.4 bits (181), Expect = 8e-16
 Identities = 17/135 (12%), Positives = 40/135 (29%), Gaps = 9/135 (6%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
               L  +G+         +  ++     D +             +       + +    
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGRAL 68

Query: 62  VQELPKELEKLVQ--LSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEG 119
            +     LE   Q     L+L    L  +   Q   +  L+ + +    L   +P+  + 
Sbjct: 69  -KATADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQ 125

Query: 120 MHGLSVIDISDNQLQ 134
             GL  + ++ N L+
Sbjct: 126 FAGLETLTLARNPLR 140

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 50.3 bits (121), Expect = 7e-08
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 2   SLTKLILRG-NQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
            L +LIL+  + L   LP +I    +LE LDL      + +P  +  L     + +  + 
Sbjct: 254 PLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312

Query: 61  FVQELPKEL 69
             Q L +  
Sbjct: 313 QAQ-LDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 11/116 (9%), Positives = 22/116 (18%), Gaps = 22/116 (18%)

Query: 40  SVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLS-------- 91
           S             L    +  ++     L +  +    D +         +        
Sbjct: 3   SSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIET 62

Query: 92  -------------QICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQ 134
                        +         L L    L    P+    +  L  + I    L 
Sbjct: 63  RTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM 117

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 92.0 bits (229), Expect = 1e-22
 Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 5/135 (3%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNN-SVPKSLGSLLKLHYLSLSNN 59
                + L  N++T     + G    ++YLDL  N  +  +  +   S   L +L+L  N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 60  QFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEG 119
             + ++  ++    +L  LDLS N L   +  +  +   +  ++L +N L   I      
Sbjct: 180 F-IYDVKGQV-VFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRF 235

Query: 120 MHGLSVIDISDNQLQ 134
              L   D+  N   
Sbjct: 236 SQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 82.0 bits (203), Expect = 6e-19
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 10/134 (7%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
           N      +  + L   L +   S   ++ LDLS N  +      L    KL  L+LS+N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
              E   +LE L  L  LDL++N      + ++    S+E L+ ++NN+S  +       
Sbjct: 70  L-YETL-DLESLSTLRTLDLNNN-----YVQELLVGPSIETLHAANNNIS-RVS--CSRG 119

Query: 121 HGLSVIDISDNQLQ 134
            G   I +++N++ 
Sbjct: 120 QGKKNIYLANNKIT 133

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 82.0 bits (203), Expect = 6e-19
 Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 10/133 (7%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           ++ +L L GN L+     ++  F +LE L+LS+N         L SL  L  L L+NN  
Sbjct: 35  NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV 92

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
                +EL     +  L  ++N +           +  + + L++N ++           
Sbjct: 93  -----QELLVGPSIETLHAANNNISR---VSCSRGQGKKNIYLANNKITMLRDLDEGCRS 144

Query: 122 GLSVIDISDNQLQ 134
            +  +D+  N++ 
Sbjct: 145 RVQYLDLKLNEID 157

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 73.1 bits (180), Expect = 1e-15
 Identities = 18/118 (15%), Positives = 44/118 (37%), Gaps = 7/118 (5%)

Query: 17  LPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLS 76
           +     +    +   ++ +    ++     S   +  L LS N   Q    +L    +L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 77  ELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQ 134
            L+LS N L       + ++ +L  L+L++N +   +         +  +  ++N + 
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-ELLV----GPSIETLHAANNNIS 112

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 2/95 (2%)

Query: 40  SVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESL 99
           ++ +   +  +     ++++   Q L    +    + ELDLS N L     + +     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 100 EKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQ 134
           E LNLS N L     +  E +  L  +D+++N +Q
Sbjct: 61  ELLNLSSNVLY-ETLD-LESLSTLRTLDLNNNYVQ 93

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.3 bits (113), Expect = 8e-07
 Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 2/79 (2%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFN-NSVPKSLGSLLKLHYLSLSNN 59
             +T + LR N+L   +   +   + LE+ DL  N F+  ++        ++  ++    
Sbjct: 214 AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272

Query: 60  QFVQELPKELEKLVQLSEL 78
           + +    +E   +  L   
Sbjct: 273 KKLTGQNEEECTVPTLGHY 291

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 90.9 bits (226), Expect = 1e-21
 Identities = 37/141 (26%), Positives = 56/141 (39%), Gaps = 1/141 (0%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
            S   L L  N L         SF EL+ LDLS          +  SL  L  L L+ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNL-SGSIPNCFEG 119
                      L  L +L      L       I ++++L++LN++HN + S  +P  F  
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 120 MHGLSVIDISDNQLQGPVPNS 140
           +  L  +D+S N++Q      
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTD 168

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 89.0 bits (221), Expect = 5e-21
 Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 5/136 (3%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKS-LGSLLKLHYLSLSNNQ 60
           SL  L L  N +   + +     ++LE+LD   +        S   SL  L YL +S+  
Sbjct: 374 SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 61  FVQELPKE-LEKLVQLSELDLSHNFLGGELLSQI-CNMESLEKLNLSHNNLSGSIPNCFE 118
             +         L  L  L ++ N      L  I   + +L  L+LS   L    P  F 
Sbjct: 433 T-RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 119 GMHGLSVIDISDNQLQ 134
            +  L V++++ NQL+
Sbjct: 492 SLSSLQVLNMASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 85.2 bits (211), Expect = 2e-19
 Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 2/136 (1%)

Query: 1   NSLTKLILRGNQLTGRLPTEI-GSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNN 59
             L  L  + + L       +  S + L YLD+S      +       L  L  L ++ N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 60  QFVQELPKE-LEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFE 118
            F +    +   +L  L+ LDLS   L     +   ++ SL+ LN++ N L       F+
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD 515

Query: 119 GMHGLSVIDISDNQLQ 134
            +  L  I +  N   
Sbjct: 516 RLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 84.8 bits (210), Expect = 2e-19
 Identities = 37/144 (25%), Positives = 57/144 (39%), Gaps = 6/144 (4%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFN--NSVPKSLGSLLKLHYLSLSN 58
            SL +L    N+      +E+     LE+LDLS N  +      +S      L YL LS 
Sbjct: 325 KSLKRLTFTSNKGGN-AFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 59  NQFVQELPKELEKLVQLSELDLSHNFLGG-ELLSQICNMESLEKLNLSHNNLSGSIPNCF 117
           N     +      L QL  LD  H+ L      S   ++ +L  L++SH +   +    F
Sbjct: 383 NGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 118 EGMHGLSVIDISDNQLQGPVPNST 141
            G+  L V+ ++ N  Q       
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDI 465

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 79.8 bits (197), Expect = 9e-18
 Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 5/138 (3%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
            L  L L   ++         S   L  L L+ N   +    +   L  L  L       
Sbjct: 53  ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112

Query: 62  VQELPKELEKLVQLSELDLSHNFLG-GELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
                  +  L  L EL+++HN +   +L     N+ +LE L+LS N +          +
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

Query: 121 HGLSV----IDISDNQLQ 134
           H + +    +D+S N + 
Sbjct: 173 HQMPLLNLSLDLSLNPMN 190

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 68.2 bits (167), Expect = 8e-14
 Identities = 26/116 (22%), Positives = 40/116 (34%), Gaps = 3/116 (2%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPK-SLGSLLKLHYLSLSNNQ 60
           +L  L +                  LE L ++ N F  +        L  L +L LS  Q
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 61  FVQELPKE-LEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPN 115
             ++L       L  L  L+++ N L          + SL+K+ L  N    S P 
Sbjct: 482 L-EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.7 bits (145), Expect = 8e-11
 Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 17/149 (11%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEY----LDLSANRFNNSVPKSLGSLLKLHYLSL 56
            +L  L L  N++     T++    ++      LDLS N  N  +       ++LH L+L
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTL 207

Query: 57  SNNQFVQELPKE-LEKLVQLSELDLSHNFLGGE---------LLSQICNMESLEKLNLSH 106
            NN     + K  ++ L  L    L       E          L  +CN+ ++E+  L++
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL-TIEEFRLAY 266

Query: 107 NNLSGS-IPNCFEGMHGLSVIDISDNQLQ 134
            +     I + F  +  +S   +    ++
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.0 bits (130), Expect = 7e-09
 Identities = 31/175 (17%), Positives = 55/175 (31%), Gaps = 31/175 (17%)

Query: 2   SLTKLILRGNQLTGRLP-TEIGSFKELEYLDLSANRF---NNSVPKSLGSLLKLHYLSLS 57
            L KL LR N  +  +  T I     LE   L    F    N       +L  L  L++ 
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 58  NNQ------FVQELPKELEKLVQLSELDLSHNFLGG-------------ELLSQICN--- 95
             +      ++ ++      L  +S   L    +               EL++       
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP 320

Query: 96  ---MESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAP 147
              ++SL++L  + N    +       +  L  +D+S N L      S +     
Sbjct: 321 TLKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 89.1 bits (222), Expect = 2e-21
 Identities = 30/134 (22%), Positives = 56/134 (41%), Gaps = 8/134 (5%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           SL       NQ+T    T + +   L  L +  N+  +     L +L +L +L +  NQ 
Sbjct: 200 SLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDL--SPLANLSQLTWLEIGTNQI 255

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
                  ++ L +L  L++  N +    +S + N+  L  L L++N L         G+ 
Sbjct: 256 --SDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311

Query: 122 GLSVIDISDNQLQG 135
            L+ + +S N +  
Sbjct: 312 NLTTLFLSQNHITD 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 87.2 bits (217), Expect = 1e-20
 Identities = 31/133 (23%), Positives = 64/133 (48%), Gaps = 8/133 (6%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
            L  L +  N++T    + + +  +L +L++  N+ ++    ++  L KL  L++ +NQ 
Sbjct: 222 RLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQI 277

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
                  L  L QL+ L L++N LG E +  I  + +L  L LS N+++   P     + 
Sbjct: 278 SD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLS 333

Query: 122 GLSVIDISDNQLQ 134
            +   D ++  ++
Sbjct: 334 KMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 83.7 bits (208), Expect = 2e-19
 Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 9/135 (6%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
            +L  L L GNQ+T    + + +  +L  L +  N+   +   +L +L  L  L L+ + 
Sbjct: 66  TNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDN 121

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
                   L  L ++  L+L  N      LS + NM  L  L ++ + +    P     +
Sbjct: 122 ISD--ISPLANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IANL 176

Query: 121 HGLSVIDISDNQLQG 135
             L  + ++ NQ++ 
Sbjct: 177 TDLYSLSLNYNQIED 191

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 83.7 bits (208), Expect = 2e-19
 Identities = 28/134 (20%), Positives = 65/134 (48%), Gaps = 9/134 (6%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           +L +L L  + ++    + + +  ++  L+L AN  N S    L ++  L+YL+++ ++ 
Sbjct: 111 NLRELYLNEDNISD--ISPLANLTKMYSLNLGANH-NLSDLSPLSNMTGLNYLTVTESK- 166

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
           V+++   +  L  L  L L++N +    +S + ++ SL       N ++   P     M 
Sbjct: 167 VKDVT-PIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITP--VANMT 221

Query: 122 GLSVIDISDNQLQG 135
            L+ + I +N++  
Sbjct: 222 RLNSLKIGNNKITD 235

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 82.6 bits (205), Expect = 4e-19
 Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 9/135 (6%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
            S+TKL++ G ++       I     LEYL+L+ N+  +  P  L +L+KL  L +  N+
Sbjct: 44  ESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNK 99

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
                   L+ L  L EL L+ + +    +S + N+  +  LNL  N+    +      M
Sbjct: 100 I--TDISALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLSP-LSNM 154

Query: 121 HGLSVIDISDNQLQG 135
            GL+ + +++++++ 
Sbjct: 155 TGLNYLTVTESKVKD 169

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 81.4 bits (202), Expect = 1e-18
 Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 9/135 (6%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
            +  L L  N       + + +   L YL ++ ++  +  P  + +L  L+ LSL+ NQ 
Sbjct: 133 KMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ- 188

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
           ++++   L  L  L       N +    ++ + NM  L  L + +N ++   P     + 
Sbjct: 189 IEDIS-PLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSP--LANLS 243

Query: 122 GLSVIDISDNQLQGP 136
            L+ ++I  NQ+   
Sbjct: 244 QLTWLEIGTNQISDI 258

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 79.1 bits (196), Expect = 8e-18
 Identities = 30/137 (21%), Positives = 61/137 (44%), Gaps = 10/137 (7%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
            L  L +  +++     T I +  +L  L L+ N+  +     L SL  LHY +   NQ 
Sbjct: 156 GLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIEDI--SPLASLTSLHYFTAYVNQ- 210

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
           + ++   +  + +L+ L + +N +    LS + N+  L  L +  N +S  I    + + 
Sbjct: 211 ITDIT-PVANMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQIS-DINA-VKDLT 265

Query: 122 GLSVIDISDNQLQGPVP 138
            L ++++  NQ+     
Sbjct: 266 KLKMLNVGSNQISDISV 282

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 75.7 bits (187), Expect = 1e-16
 Identities = 25/138 (18%), Positives = 60/138 (43%), Gaps = 10/138 (7%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
              + +L+   +T          + +  L ++  +  +   + +  L  L YL+L+ NQ 
Sbjct: 23  EGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQ- 77

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
           + ++   L  LV+L+ L +  N +    +S + N+ +L +L L+ +N+S   P     + 
Sbjct: 78  ITDIS-PLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP--LANLT 132

Query: 122 GLSVIDISDNQLQGPVPN 139
            +  +++  N     +  
Sbjct: 133 KMYSLNLGANHNLSDLSP 150

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.6 bits (148), Expect = 2e-11
 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 4/85 (4%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
             L  L +  NQ++    + + +  +L  L L+ N+  N   + +G L  L  L LS N 
Sbjct: 265 TKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322

Query: 61  FVQELPKELEKLVQLSELDLSHNFL 85
            + ++   L  L ++   D ++  +
Sbjct: 323 -ITDIR-PLASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.7 bits (143), Expect = 1e-10
 Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 8/109 (7%)

Query: 30  LDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGEL 89
           L       N   P     L +     L        +    E+L  +++L ++   +    
Sbjct: 5   LATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS-- 58

Query: 90  LSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVP 138
           +  I  + +LE LNL+ N ++   P     +  L+ + I  N++     
Sbjct: 59  IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISA 105

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 85.4 bits (212), Expect = 4e-21
 Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 5/133 (3%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
           NSLT + L    +T    T I     ++ L ++     N  P  +  L  L  L +    
Sbjct: 44  NSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKD 99

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
              +    L  L  L+ LD+SH+     +L++I  +  +  ++LS+N     I    + +
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTL 158

Query: 121 HGLSVIDISDNQL 133
             L  ++I  + +
Sbjct: 159 PELKSLNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 78.8 bits (195), Expect = 1e-18
 Identities = 22/134 (16%), Positives = 50/134 (37%), Gaps = 5/134 (3%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           ++  L +     T      I     LE L +      +    +L  L  L  L +S++  
Sbjct: 67  NIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
              +  ++  L +++ +DLS+N    ++   +  +  L+ LN+  + +        E   
Sbjct: 125 DDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFP 181

Query: 122 GLSVIDISDNQLQG 135
            L+ +      + G
Sbjct: 182 KLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 17/109 (15%), Positives = 46/109 (42%), Gaps = 4/109 (3%)

Query: 25  KELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNF 84
              +         +++   +   +  L Y++L+N   V +L   +E    + +L +++  
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANIN-VTDL-TGIEYAHNIKDLTINNIH 77

Query: 85  LGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQL 133
                 + I  + +LE+L +   +++        G+  L+++DIS +  
Sbjct: 78  ATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.5 bits (137), Expect = 3e-10
 Identities = 19/108 (17%), Positives = 44/108 (40%), Gaps = 21/108 (19%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           +L +L + G  +T      +     L  LD+S +  ++S+   + +L K++ + LS N  
Sbjct: 89  NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148

Query: 62  VQELP---------------------KELEKLVQLSELDLSHNFLGGE 88
           + ++                      + +E   +L++L      +GG+
Sbjct: 149 ITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGGK 196

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 87.2 bits (216), Expect = 2e-20
 Identities = 30/155 (19%), Positives = 57/155 (36%), Gaps = 5/155 (3%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNN-SVPKSLGSLLKLHYLSLSNN 59
                + L  N++T     + G    ++YLDL  N  +  +  +   S   L +L+L  N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 60  QFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEG 119
               ++  ++    +L  LDLS N L   +  +  +   +  ++L +N L   I      
Sbjct: 180 FI-YDVKGQV-VFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRF 235

Query: 120 MHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGN 154
              L   D+  N            +N  V+ +   
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 81.4 bits (201), Expect = 2e-18
 Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 10/133 (7%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           ++ +L L GN L+     ++  F +LE L+LS+N         L SL  L  L L+NN  
Sbjct: 35  NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV 92

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
                +EL     +  L  ++N +     S     +  + + L++N ++           
Sbjct: 93  -----QELLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRS 144

Query: 122 GLSVIDISDNQLQ 134
            +  +D+  N++ 
Sbjct: 145 RVQYLDLKLNEID 157

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 79.1 bits (195), Expect = 1e-17
 Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 10/133 (7%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
           N      +  + L   L +   S   ++ LDLS N  +      L    KL  L+LS+N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
              E   +LE L  L  LDL++N      + ++    S+E L+ ++NN+S  +       
Sbjct: 70  L-YETL-DLESLSTLRTLDLNNN-----YVQELLVGPSIETLHAANNNIS-RVS--CSRG 119

Query: 121 HGLSVIDISDNQL 133
            G   I +++N++
Sbjct: 120 QGKKNIYLANNKI 132

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 69.9 bits (171), Expect = 2e-14
 Identities = 18/117 (15%), Positives = 44/117 (37%), Gaps = 7/117 (5%)

Query: 17  LPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLS 76
           +     +    +   ++ +    ++     S   +  L LS N   Q    +L    +L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 77  ELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQL 133
            L+LS N L       + ++ +L  L+L++N +   +         +  +  ++N +
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-ELLV----GPSIETLHAANNNI 111

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 62.9 bits (153), Expect = 6e-12
 Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 2/95 (2%)

Query: 40  SVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESL 99
           ++ +   +  +     ++++   Q L    +    + ELDLS N L     + +     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 100 EKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQ 134
           E LNLS N L  ++    E +  L  +D+++N +Q
Sbjct: 61  ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ 93

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.0 bits (148), Expect = 3e-11
 Identities = 20/167 (11%), Positives = 49/167 (29%), Gaps = 28/167 (16%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFN-NSVPKSLGSLLKLHYLSLSNN 59
             +T + LR N+L   +   +   + LE+ DL  N F+  ++        ++  ++    
Sbjct: 214 AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272

Query: 60  QFVQELPKE----------------------LEKLVQLSELDLSHNFLGGELLSQI---- 93
           + +    +E                       ++L+ L   + +     G    ++    
Sbjct: 273 KKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECER 332

Query: 94  CNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS 140
            N     +++         I            ++     L   V N 
Sbjct: 333 ENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNG 379

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 14/146 (9%), Positives = 29/146 (19%), Gaps = 7/146 (4%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLS--- 57
            +     +    +                    A    +        L+ L     +   
Sbjct: 260 KNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLS 319

Query: 58  -NNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNC 116
                 + L  E E   +  E+D         +       ++   L      L   + N 
Sbjct: 320 GQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNG 379

Query: 117 FEGMHGLSVI---DISDNQLQGPVPN 139
                 L       +   +LQ     
Sbjct: 380 RRAHAELDGTLQQAVGQIELQHATEE 405

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 39.1 bits (91), Expect = 5e-04
 Identities = 13/134 (9%), Positives = 33/134 (24%), Gaps = 3/134 (2%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
                L  +G++   RL  E  +      +D    ++   + +          L      
Sbjct: 313 KEHALLSGQGSETE-RLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKA 371

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLS-GSIPNCFEG 119
             +++        +L            EL         L+ L           +      
Sbjct: 372 LDEQVSNGRRAHAELDGTLQQAVGQ-IELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQ 430

Query: 120 MHGLSVIDISDNQL 133
            + +   D+  ++ 
Sbjct: 431 NNAIRDWDMYQHKE 444

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 83.5 bits (207), Expect = 2e-19
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 12/140 (8%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKE---LEYLDLSANRFNNSVPKSLGSLLKLHYLSLSN 58
            L  L  + + L  ++  E   F     L YLD+S      +       L  L  L ++ 
Sbjct: 102 QLEHLDFQHSNLK-QMS-EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159

Query: 59  NQFVQELPKE-LEKLVQLSELDLSHN---FLGGELLSQICNMESLEKLNLSHNNLSGSIP 114
           N F +    +   +L  L+ LDLS      L     +   ++ SL+ LN+SHNN      
Sbjct: 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN---SLSSLQVLNMSHNNFFSLDT 216

Query: 115 NCFEGMHGLSVIDISDNQLQ 134
             ++ ++ L V+D S N + 
Sbjct: 217 FPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 75.0 bits (185), Expect = 2e-16
 Identities = 37/137 (27%), Positives = 56/137 (40%), Gaps = 9/137 (6%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ- 60
           S T++      LT  +PT I        L+L +N+  +        L +L  LSLS+N  
Sbjct: 8   SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 61  -FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNC--F 117
            F     +       L  LDLS N +   + S    +E LE L+  H+NL   +     F
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVF 122

Query: 118 EGMHGLSVIDISDNQLQ 134
             +  L  +DIS    +
Sbjct: 123 LSLRNLIYLDISHTHTR 139

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 71.6 bits (176), Expect = 3e-15
 Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 6/138 (4%)

Query: 1   NSLTKLILRGNQLTGRLPTEI-GSFKELEYLDLSANRFNNSV-PKSLGSLLKLHYLSLSN 58
            +L  L +            I      LE L ++ N F  +  P     L  L +L LS 
Sbjct: 126 RNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 59  NQFVQELPKE-LEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCF 117
            Q  ++L       L  L  L++SHN            + SL+ L+ S N++  S     
Sbjct: 185 CQL-EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243

Query: 118 EGM-HGLSVIDISDNQLQ 134
           +     L+ ++++ N   
Sbjct: 244 QHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 11/48 (22%), Positives = 18/48 (37%)

Query: 98  SLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRN 145
           S  +L L  N L       F+ +  L+ + +S N L      S +   
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG 76

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 84.9 bits (210), Expect = 2e-19
 Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 4/137 (2%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSV-PKSLGSLLKLHYLSLSNNQ 60
           +  +L+L  N +     +     ++L+ L+L +     ++  ++  +L  L  L L +++
Sbjct: 25  TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQ--ICNMESLEKLNLSHNNLSG-SIPNCF 117
                P   + L  L EL L    L   +L      N+++L +L+LS N +    +   F
Sbjct: 85  IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSF 144

Query: 118 EGMHGLSVIDISDNQLQ 134
             ++ L  ID S NQ+ 
Sbjct: 145 GKLNSLKSIDFSSNQIF 161

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 76.0 bits (187), Expect = 2e-16
 Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 5/133 (3%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
           +S+  L L    +         + K+L+ L+L+ N+ N    ++   L  L  L+LS N 
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
             +        L +++ +DL  N +          +E L+ L+L  N L+         +
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFI 380

Query: 121 HGLSVIDISDNQL 133
             +  I +S N+L
Sbjct: 381 PSIPDIFLSGNKL 393

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 76.0 bits (187), Expect = 2e-16
 Identities = 26/136 (19%), Positives = 53/136 (38%), Gaps = 2/136 (1%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKE--LEYLDLSANRFNNSVPKSLGSLLKLHYLSLSN 58
           + +       + +               + +LDLS     +   +   +L  L  L+L+ 
Sbjct: 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY 299

Query: 59  NQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFE 118
           N+  +   +    L  L  L+LS+N LG    S    +  +  ++L  N+++      F+
Sbjct: 300 NKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK 359

Query: 119 GMHGLSVIDISDNQLQ 134
            +  L  +D+ DN L 
Sbjct: 360 FLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 76.0 bits (187), Expect = 2e-16
 Identities = 31/139 (22%), Positives = 49/139 (35%), Gaps = 6/139 (4%)

Query: 2   SLTKLILRGNQLTGRLPTEI-GSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
            L  L L        +  E   +   L  LDL +++     P +   L  L  L L    
Sbjct: 49  QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCG 108

Query: 61  FVQEL--PKELEKLVQLSELDLSHNFLGG-ELLSQICNMESLEKLNLSHNNLSGSIPNCF 117
               +        L  L+ LDLS N +    L      + SL+ ++ S N +     +  
Sbjct: 109 LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL 168

Query: 118 EGMHG--LSVIDISDNQLQ 134
           E + G  LS   ++ N L 
Sbjct: 169 EPLQGKTLSFFSLAANSLY 187

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 75.2 bits (185), Expect = 4e-16
 Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 9/134 (6%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
            L  L L  N++             L+ L+LS N        +   L K+ Y+ L  N  
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
                +  + L +L  LDL  N      L+ I  + S+  + LS N L            
Sbjct: 351 AIIQDQTFKFLEKLQTLDLRDN-----ALTTIHFIPSIPDIFLSGNKLVTLPKINLT--- 402

Query: 122 GLSVIDISDNQLQG 135
             ++I +S+N+L+ 
Sbjct: 403 -ANLIHLSENRLEN 415

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 74.5 bits (183), Expect = 6e-16
 Identities = 33/141 (23%), Positives = 54/141 (38%), Gaps = 8/141 (5%)

Query: 8   LRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPK 67
            R   LT ++P  + +    E L LS N        S   L +L  L L +      + K
Sbjct: 11  YRFCNLT-QVPQVLNT---TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDK 66

Query: 68  E-LEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSI--PNCFEGMHGLS 124
           E    L  L  LDL  + +          +  L +L L    LS ++     F  +  L+
Sbjct: 67  EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126

Query: 125 VIDISDNQLQGPVPNSTAFRN 145
            +D+S NQ++  +    +F  
Sbjct: 127 RLDLSKNQIRS-LYLHPSFGK 146

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 74.1 bits (182), Expect = 1e-15
 Identities = 35/141 (24%), Positives = 59/141 (41%), Gaps = 11/141 (7%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNN-SVPKSLGSLLKLHYLSLSNN 59
            S+  + L GN+L   LP    +      + LS NR  N  +   L  +  L  L L+ N
Sbjct: 381 PSIPDIFLSGNKLV-TLPKINLT---ANLIHLSENRLENLDILYFLLRVPHLQILILNQN 436

Query: 60  QFVQELPKEL-EKLVQLSELDLSHNFLGGELLSQIC-----NMESLEKLNLSHNNLSGSI 113
           +F      +   +   L +L L  N L     +++C      +  L+ L L+HN L+   
Sbjct: 437 RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLP 496

Query: 114 PNCFEGMHGLSVIDISDNQLQ 134
           P  F  +  L  + ++ N+L 
Sbjct: 497 PGVFSHLTALRGLSLNSNRLT 517

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 72.5 bits (178), Expect = 3e-15
 Identities = 28/116 (24%), Positives = 44/116 (37%), Gaps = 6/116 (5%)

Query: 35  NRFNN--SVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQ 92
            RF N   VP+ L +      L LS N            L QL  L+L   +    +  +
Sbjct: 11  YRFCNLTQVPQVLNTT---ERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKE 67

Query: 93  IC-NMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAP 147
              N+ +L  L+L  + +    P+ F+G+  L  + +    L   V     FRN  
Sbjct: 68  AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 70.6 bits (173), Expect = 2e-14
 Identities = 28/147 (19%), Positives = 55/147 (37%), Gaps = 14/147 (9%)

Query: 2   SLTKLILRGNQLTGRLP---------TEIGSF---KELEYLDLSANRFNNSVPKSLGSL- 48
            L  L + GN  T  +          ++  S      +       +   +    +   L 
Sbjct: 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLA 264

Query: 49  -LKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHN 107
              + +L LS+        +  E L  L  L+L++N +          +++L+ LNLS+N
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324

Query: 108 NLSGSIPNCFEGMHGLSVIDISDNQLQ 134
            L     + F G+  ++ ID+  N + 
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIA 351

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 68.3 bits (167), Expect = 1e-13
 Identities = 33/156 (21%), Positives = 55/156 (35%), Gaps = 23/156 (14%)

Query: 2   SLTKLILRGNQLTG-RLPTEIGSFKELEYLDLSANRFNNSVPKSLGSL--LKLHYLSLSN 58
           +LT+L L  NQ+    L    G    L+ +D S+N+        L  L    L + SL+ 
Sbjct: 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183

Query: 59  NQFVQELPKELEKL------VQLSELDLSHNFLGGELLSQICN------------MESLE 100
           N     +  +  K       + L  LD+S N    ++     N               + 
Sbjct: 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243

Query: 101 KLNLSHNNLSGSIPNCFEGMHGLSV--IDISDNQLQ 134
                 +N+     N F G+   SV  +D+S   + 
Sbjct: 244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF 279

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.8 bits (163), Expect = 3e-13
 Identities = 34/153 (22%), Positives = 56/153 (36%), Gaps = 20/153 (13%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKE------LEYLDLSANRFNNSVPK------------ 43
           +L+   L  N L  R+  + G          LE LD+S N +   +              
Sbjct: 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF 234

Query: 44  SLGSLLKLHYLSLSNNQFVQELPKELEKLVQLS--ELDLSHNFLGGELLSQICNMESLEK 101
           SL     +       +            L + S   LDLSH F+          ++ L+ 
Sbjct: 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294

Query: 102 LNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQ 134
           LNL++N ++      F G+  L V+++S N L 
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.0 bits (161), Expect = 6e-13
 Identities = 39/139 (28%), Positives = 54/139 (38%), Gaps = 11/139 (7%)

Query: 2   SLTKLILRGNQLTGRLPTEI-GSFKELEYLDLSANRFNNSVPKSL-----GSLLKLHYLS 55
            L  LIL  N+ +     +       LE L L  N    +    L       L  L  L 
Sbjct: 427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLY 486

Query: 56  LSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPN 115
           L++N      P     L  L  L L+ N L   +LS      +LE L++S N L    P+
Sbjct: 487 LNHNYLNSLPPGVFSHLTALRGLSLNSNRL--TVLSHNDLPANLEILDISRNQLLAPNPD 544

Query: 116 CFEGMHGLSVIDISDNQLQ 134
            F     LSV+DI+ N+  
Sbjct: 545 VF---VSLSVLDITHNKFI 560

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 82.5 bits (204), Expect = 9e-19
 Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 4/135 (2%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
               L L  N++      E  SF  LE L+L+ N  +   P +  +L  L  L L +N+ 
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 62  VQELPKE-LEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIP-NCFEG 119
            + +P      L  L++LD+S N +   L     ++ +L+ L +  N+L   I    F G
Sbjct: 93  -KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSG 150

Query: 120 MHGLSVIDISDNQLQ 134
           ++ L  + +    L 
Sbjct: 151 LNSLEQLTLEKCNLT 165

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 80.5 bits (199), Expect = 5e-18
 Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 10/139 (7%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
           NSL +L L    LT      +     L  L L     N     S   L +L  L +S+  
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQI-----CNMESLEKLNLSHNNLSGSIPN 115
           ++  +       + L+ L ++H       L+ +      ++  L  LNLS+N +S    +
Sbjct: 212 YLDTMTPNCLYGLNLTSLSITHC-----NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS 266

Query: 116 CFEGMHGLSVIDISDNQLQ 134
               +  L  I +   QL 
Sbjct: 267 MLHELLRLQEIQLVGGQLA 285

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 80.1 bits (198), Expect = 5e-18
 Identities = 28/150 (18%), Positives = 55/150 (36%), Gaps = 10/150 (6%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFK---ELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSN 58
           +L  L +  N L   +     +F     LE L L      +   ++L  L  L  L L +
Sbjct: 129 NLKSLEVGDNDLV-YISH--RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185

Query: 59  NQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIP-NCF 117
                      ++L +L  L++SH      +        +L  L+++H NL+ ++P    
Sbjct: 186 LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAV 244

Query: 118 EGMHGLSVIDISDNQLQGPVPNSTAFRNAP 147
             +  L  +++S N +     +        
Sbjct: 245 RHLVYLRFLNLSYNPISTIEGS--MLHELL 272

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 74.8 bits (184), Expect = 5e-16
 Identities = 25/136 (18%), Positives = 46/136 (33%), Gaps = 6/136 (4%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
            L  L +        +         L  L ++          ++  L+ L +L+LS N  
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260

Query: 62  VQELPKELEKLVQLSELDLSHN---FLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFE 118
                  L +L++L E+ L       +          +  L  LN+S N L+    + F 
Sbjct: 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR---GLNYLRVLNVSGNQLTTLEESVFH 317

Query: 119 GMHGLSVIDISDNQLQ 134
            +  L  + +  N L 
Sbjct: 318 SVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 73.6 bits (181), Expect = 1e-15
 Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 9/137 (6%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
                ++    +    +P  I    E   LDL  NR          S   L  L L+ N 
Sbjct: 11  AQDRAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI 67

Query: 61  FVQELPKELEKLVQLSELDLSHNFLG---GELLSQICNMESLEKLNLSHNNLSGSIPNCF 117
                P     L  L  L L  N L      + +    + +L KL++S N +   +   F
Sbjct: 68  VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT---GLSNLTKLDISENKIVILLDYMF 124

Query: 118 EGMHGLSVIDISDNQLQ 134
           + ++ L  +++ DN L 
Sbjct: 125 QDLYNLKSLEVGDNDLV 141

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 82.5 bits (204), Expect = 1e-18
 Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 2/135 (1%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           ++  L L  N++T     ++ +   L+ L L ++R N     +  SL  L +L LS+N  
Sbjct: 27  AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQIC-NMESLEKLNLSHNNLSGSIP-NCFEG 119
                     L  L  L+L  N      ++ +  N+ +L+ L + +      I    F G
Sbjct: 87  SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146

Query: 120 MHGLSVIDISDNQLQ 134
           +  L+ ++I    L+
Sbjct: 147 LTSLNELEIKALSLR 161

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 80.5 bits (199), Expect = 6e-18
 Identities = 25/138 (18%), Positives = 55/138 (39%), Gaps = 6/138 (4%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           ++ +L +    L   L T     ++++ + +  ++           L  L +L LS N  
Sbjct: 287 TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM 346

Query: 62  VQELPKE---LEKLVQLSELDLSHNFLG--GELLSQICNMESLEKLNLSHNNLSGSIPNC 116
           V+E  K          L  L LS N L    +    +  +++L  L++S N     +P+ 
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDS 405

Query: 117 FEGMHGLSVIDISDNQLQ 134
            +    +  +++S   ++
Sbjct: 406 CQWPEKMRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 79.8 bits (197), Expect = 1e-17
 Identities = 37/153 (24%), Positives = 56/153 (36%), Gaps = 24/153 (15%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKE---LEYLDLSANRFNNSVPKSLGSLLKLHYLSLSN 58
           SL  L+L  N L   +            L  LD+S N F+  +P S     K+ +L+LS+
Sbjct: 362 SLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSS 419

Query: 59  NQFV---QELPKELEKL--------------VQLSELDLSHNFLGGELLSQICNMESLEK 101
                    +P+ LE L               +L EL +S N L  + L        L  
Sbjct: 420 TGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKL--KTLPDASLFPVLLV 477

Query: 102 LNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQ 134
           + +S N L       F+ +  L  I +  N   
Sbjct: 478 MKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 77.5 bits (191), Expect = 6e-17
 Identities = 27/142 (19%), Positives = 55/142 (38%), Gaps = 4/142 (2%)

Query: 2   SLTKLILRGNQLTGRLPTEI-GSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
           +L  LIL+ +++   +  +   S   LE+LDLS N  ++      G L  L YL+L  N 
Sbjct: 51  NLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 109

Query: 61  FVQ-ELPKELEKLVQLSELDLSHNFLGGELLSQ-ICNMESLEKLNLSHNNLSGSIPNCFE 118
           +    +      L  L  L + +     E+       + SL +L +   +L        +
Sbjct: 110 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169

Query: 119 GMHGLSVIDISDNQLQGPVPNS 140
            +  +  + +  ++    +   
Sbjct: 170 SIRDIHHLTLHLSESAFLLEIF 191

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 75.5 bits (186), Expect = 2e-16
 Identities = 30/147 (20%), Positives = 49/147 (33%), Gaps = 13/147 (8%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKE--------LEYLDLSANRFNNSVPKSLGSLLKLH 52
           + +       N L    P+E     E        +  L +        +      L K+ 
Sbjct: 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313

Query: 53  YLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQ---ICNMESLEKLNLSHNNL 109
            +++ N++         + L  L  LDLS N +  E L          SL+ L LS N+L
Sbjct: 314 RITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL 373

Query: 110 S--GSIPNCFEGMHGLSVIDISDNQLQ 134
                       +  L+ +DIS N   
Sbjct: 374 RSMQKTGEILLTLKNLTSLDISRNTFH 400

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 64.4 bits (157), Expect = 2e-12
 Identities = 22/141 (15%), Positives = 43/141 (30%), Gaps = 2/141 (1%)

Query: 2   SLTKLILRGNQLTG-RLPTEIGSFKELEYLDLSANRFNNSVPK-SLGSLLKLHYLSLSNN 59
           SL  L L GN      + +   +   L+ L +      + + +     L  L+ L +   
Sbjct: 99  SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158

Query: 60  QFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEG 119
                  + L+ +  +  L L  +     L      + S+  L L   NL+    +    
Sbjct: 159 SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPV 218

Query: 120 MHGLSVIDISDNQLQGPVPNS 140
               S +     +       S
Sbjct: 219 DEVSSPMKKLAFRGSVLTDES 239

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.5 bits (147), Expect = 4e-11
 Identities = 24/164 (14%), Positives = 61/164 (37%), Gaps = 18/164 (10%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
           +S+  L LR   L     + +   +    +   A R +    +S   LLKL    L  ++
Sbjct: 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255

Query: 61  F---------VQELPKELE---------KLVQLSELDLSHNFLGGELLSQICNMESLEKL 102
                     + +               + V +  L +   +L  +L +    +E ++++
Sbjct: 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRI 315

Query: 103 NLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNA 146
            + ++ +     +  + +  L  +D+S+N +      ++A + A
Sbjct: 316 TVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.4 bits (144), Expect = 9e-11
 Identities = 25/142 (17%), Positives = 47/142 (33%), Gaps = 8/142 (5%)

Query: 2   SLTKLILRGNQLTGRLPTE-IGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
           +L  L +   +    +          L  L++ A    N   +SL S+  +H+L+L  ++
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLS-------GSI 113
               L    + L  +  L+L    L     S +   E    +       S         +
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243

Query: 114 PNCFEGMHGLSVIDISDNQLQG 135
                 +  LS ++  D  L G
Sbjct: 244 LKLLRYILELSEVEFDDCTLNG 265

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 6/83 (7%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
            +L  L +  N L       +     L+ L +S N+   ++P +      L  + +S NQ
Sbjct: 431 QTLEVLDVSNNNLD-SFSLFLPR---LQELYISRNKL-KTLPDA-SLFPVLLVMKISRNQ 484

Query: 61  FVQELPKELEKLVQLSELDLSHN 83
                    ++L  L ++ L  N
Sbjct: 485 LKSVPDGIFDRLTSLQKIWLHTN 507

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 81.9 bits (202), Expect = 2e-18
 Identities = 35/134 (26%), Positives = 50/134 (37%), Gaps = 19/134 (14%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
           N    L +  + LT  LP  +     +  L +  N    S+P       +L  L +S NQ
Sbjct: 40  NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPALPP---ELRTLEVSGNQ 92

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
               LP     L++LS        L             L KL +  N L+ S+P      
Sbjct: 93  L-TSLPVLPPGLLELSIFSNPLTHLPALP-------SGLCKLWIFGNQLT-SLPVLPP-- 141

Query: 121 HGLSVIDISDNQLQ 134
            GL  + +SDNQL 
Sbjct: 142 -GLQELSVSDNQLA 154

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 73.8 bits (181), Expect = 1e-15
 Identities = 37/146 (25%), Positives = 54/146 (36%), Gaps = 28/146 (19%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLL------------ 49
            L  L + GNQLT  LP       EL            ++P  L  L             
Sbjct: 82  ELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP-ALPSGLCKLWIFGNQLTSLPVL 139

Query: 50  --KLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHN 107
              L  LS+S+NQ    LP       +L +L   +N L   L         L++L++S N
Sbjct: 140 PPGLQELSVSDNQL-ASLPALPS---ELCKLWAYNNQLT-SLPMLPSG---LQELSVSDN 191

Query: 108 NLSGSIPNCFEGMHGLSVIDISDNQL 133
            L+ S+P        L  +   +N+L
Sbjct: 192 QLA-SLP---TLPSELYKLWAYNNRL 213

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 73.4 bits (180), Expect = 1e-15
 Identities = 34/133 (25%), Positives = 51/133 (38%), Gaps = 20/133 (15%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
            L +L +  NQL   LP        L  L    N+   S+P     L     LS+S+NQ 
Sbjct: 142 GLQELSVSDNQLA-SLPALPSE---LCKLWAYNNQLT-SLPMLPSGL---QELSVSDNQL 193

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
              LP    +L +L   +     L             L++L +S N L+ S+P       
Sbjct: 194 -ASLPTLPSELYKLWAYNNRLTSLPALP-------SGLKELIVSGNRLT-SLP---VLPS 241

Query: 122 GLSVIDISDNQLQ 134
            L  + +S N+L 
Sbjct: 242 ELKELMVSGNRLT 254

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 66.5 bits (162), Expect = 4e-13
 Identities = 31/122 (25%), Positives = 47/122 (38%), Gaps = 9/122 (7%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
            L +LI+ GN+LT  LP        L+ L +S NR   S+P     L     LS+  NQ 
Sbjct: 222 GLKELIVSGNRLT-SLPVLPSE---LKELMVSGNRLT-SLPMLPSGL---LSLSVYRNQL 273

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
              LP+ L  L   + ++L  N L    L  +  + S    +        +  +      
Sbjct: 274 -TRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETR 332

Query: 122 GL 123
            L
Sbjct: 333 AL 334

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.4 bits (136), Expect = 9e-10
 Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 8/116 (6%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
            L +L++ GN+LT  LP        L  L +  N+    +P+SL  L     ++L  N  
Sbjct: 242 ELKELMVSGNRLT-SLPMLPSG---LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 296

Query: 62  ---VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIP 114
                +  +E+      S   +  +  G     +   +       L         P
Sbjct: 297 SERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAP 352

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 81.2 bits (201), Expect = 3e-18
 Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 10/138 (7%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
            +L +L L GNQL       + S   L  LDL+ N+ +N  P  L  L KL  L L  NQ
Sbjct: 221 TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 276

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
            +  +   L  L  L+ L+L+ N L    +S I N+++L  L L  NN+S   P     +
Sbjct: 277 -ISNIS-PLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSL 330

Query: 121 HGLSVIDISDNQLQGPVP 138
             L  +   +N++     
Sbjct: 331 TKLQRLFFYNNKVSDVSS 348

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 78.5 bits (194), Expect = 2e-17
 Identities = 29/139 (20%), Positives = 58/139 (41%), Gaps = 10/139 (7%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
            LT+L L  NQ++    + +     L  L+L+ N+  +     + +L  L YL+L  N  
Sbjct: 266 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 321

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
                  +  L +L  L   +N +    +S + N+ ++  L+  HN +S   P     + 
Sbjct: 322 SD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLT 375

Query: 122 GLSVIDISDNQLQGPVPNS 140
            ++ + ++D        N 
Sbjct: 376 RITQLGLNDQAWTNAPVNY 394

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 78.1 bits (193), Expect = 3e-17
 Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 10/137 (7%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           +L  LI   NQ++    T +G    L+ L L+ N+  +    +L SL  L  L L+NNQ 
Sbjct: 200 NLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQ- 254

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
           +  L   L  L +L+EL L  N +    +S +  + +L  L L+ N L    P     + 
Sbjct: 255 ISNLA-PLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLK 309

Query: 122 GLSVIDISDNQLQGPVP 138
            L+ + +  N +    P
Sbjct: 310 NLTYLTLYFNNISDISP 326

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 77.3 bits (191), Expect = 7e-17
 Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 8/136 (5%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
            +LT L L  NQL     + I + K L YL L  N  ++  P  + SL KL  L   NN+
Sbjct: 287 TALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNK 342

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
                   L  L  ++ L   HN +    L+ + N+  + +L L+    + +  N    +
Sbjct: 343 V--SDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 398

Query: 121 HGLSVIDISDNQLQGP 136
              + +      L  P
Sbjct: 399 SIPNTVKNVTGALIAP 414

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 76.5 bits (189), Expect = 1e-16
 Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 11/134 (8%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
            L  +++  NQ+     T + +   L  L L  N+  +  P  L +L  L+ L LS+N  
Sbjct: 91  KLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI 146

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
                  L  L  L +L   +       L  + N+ +LE+L++S N +S    +    + 
Sbjct: 147 SD--ISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSD--ISVLAKLT 199

Query: 122 GLSVIDISDNQLQG 135
            L  +  ++NQ+  
Sbjct: 200 NLESLIATNNQISD 213

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 76.5 bits (189), Expect = 1e-16
 Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 11/138 (7%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
           N+LT++    NQLT    T + +  +L  + ++ N+  +  P  L +L  L  L+L NNQ
Sbjct: 68  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 123

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
                   L+ L  L+ L+LS N +    +S +  + SL++L+   N ++   P     +
Sbjct: 124 ITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTDLKP--LANL 176

Query: 121 HGLSVIDISDNQLQGPVP 138
             L  +DIS N++     
Sbjct: 177 TTLERLDISSNKVSDISV 194

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 75.8 bits (187), Expect = 2e-16
 Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 11/135 (8%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
            SL +L   GNQ+T   P  + +   LE LD+S+N+ ++     L  L  L  L  +NNQ
Sbjct: 156 TSLQQLSF-GNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQ 210

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
                P  L  L  L EL L+ N L    +  + ++ +L  L+L++N +S   P    G+
Sbjct: 211 ISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGL 264

Query: 121 HGLSVIDISDNQLQG 135
             L+ + +  NQ+  
Sbjct: 265 TKLTELKLGANQISN 279

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 75.4 bits (186), Expect = 3e-16
 Identities = 23/137 (16%), Positives = 58/137 (42%), Gaps = 10/137 (7%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
              K +L    +T  +        ++  L        +     +  L  L  ++ SNNQ 
Sbjct: 25  EKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQ- 79

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
           + ++   L+ L +L ++ +++N +    ++ + N+ +L  L L +N ++   P   + + 
Sbjct: 80  LTDIT-PLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITDIDP--LKNLT 134

Query: 122 GLSVIDISDNQLQGPVP 138
            L+ +++S N +     
Sbjct: 135 NLNRLELSSNTISDISA 151

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 72.7 bits (179), Expect = 2e-15
 Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 10/133 (7%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
           + +T L      +       +     L  ++ S N+  +  P  L +L KL  + ++NNQ
Sbjct: 46  DQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ 101

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
                   L  L  L+ L L +N +    +  + N+ +L +L LS N +S    +   G+
Sbjct: 102 IAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGL 155

Query: 121 HGLSVIDISDNQL 133
             L  +   +   
Sbjct: 156 TSLQQLSFGNQVT 168

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.4 bits (142), Expect = 2e-10
 Identities = 15/109 (13%), Positives = 42/109 (38%), Gaps = 6/109 (5%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
            L +L    N+++    + + +   + +L    N+ ++  P  L +L ++  L L++  +
Sbjct: 332 KLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW 387

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLS 110
                     +   + +      L     + I +  S  + +++ N  S
Sbjct: 388 TNAPVNYKANVSIPNTVKNVTGAL--IAPATISDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.6 bits (132), Expect = 4e-09
 Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 6/95 (6%)

Query: 44  SLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLN 103
           +  +L +     L        +      L Q++ L      +    +  +  + +L ++N
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQIN 74

Query: 104 LSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVP 138
            S+N L+   P   + +  L  I +++NQ+    P
Sbjct: 75  FSNNQLTDITP--LKNLTKLVDILMNNNQIADITP 107

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 81.2 bits (200), Expect = 3e-18
 Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 20/134 (14%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
             +T L +  N L   LP    S   LEYLD   NR + ++P+   SL  L    + NNQ
Sbjct: 80  PQITVLEITQNALI-SLPELPAS---LEYLDACDNRLS-TLPELPASLKHLD---VDNNQ 131

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
               LP+       L  ++  +N L   L     +   LE L++ +N L+  +P   E  
Sbjct: 132 L-TMLPELPA---LLEYINADNNQLT-MLPELPTS---LEVLSVRNNQLT-FLP---ELP 179

Query: 121 HGLSVIDISDNQLQ 134
             L  +D+S N L+
Sbjct: 180 ESLEALDVSTNLLE 193

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 67.3 bits (164), Expect = 2e-13
 Identities = 29/160 (18%), Positives = 48/160 (30%), Gaps = 12/160 (7%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKL----HYLSLS 57
           SL  L +R NQLT  LP    S   LE LD+S N    S+P              +    
Sbjct: 161 SLEVLSVRNNQLT-FLPELPES---LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCR 215

Query: 58  NNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCF 117
            N+    +P+ +  L     + L  N L    + +  + ++ +                 
Sbjct: 216 ENRI-THIPENILSLDPTCTIILEDNPL-SSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

Query: 118 EGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKEL 157
             +H   + D           +  +      E  E     
Sbjct: 274 NTLH-RPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTF 312

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 63.8 bits (155), Expect = 3e-12
 Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 12/125 (9%)

Query: 11  NQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLK-LHYLSLSNNQFVQELPKEL 69
           N ++G       ++ + E   L     N +V      L+     L L+       LP  L
Sbjct: 20  NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNL-SSLPDNL 78

Query: 70  EKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDIS 129
               Q++ L+++ N L   L     +   LE L+   N LS ++P     +  L   D+ 
Sbjct: 79  PP--QITVLEITQNAL-ISLPELPAS---LEYLDACDNRLS-TLPELPASLKHL---DVD 128

Query: 130 DNQLQ 134
           +NQL 
Sbjct: 129 NNQLT 133

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 57.3 bits (138), Expect = 4e-10
 Identities = 17/119 (14%), Positives = 34/119 (28%), Gaps = 8/119 (6%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELE----YLDLSANRFNNSVPKSLGSLLKLHYLSL 56
            SL  L +  N L   LP         E    +     NR    +P+++ SL     + L
Sbjct: 180 ESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIIL 237

Query: 57  SNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPN 115
            +N     + + L +     +      +    +     N       +        +  +
Sbjct: 238 EDNPLSSRIRESLSQQTAQPDYHGPRIYF--SMSDGQQNTLHRPLADAVTAWFPENKQS 294

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 11/99 (11%)

Query: 40  SVPKSLGSLLKLHYLSLSNN--QFVQELPKELEKLVQLSELDLSHNFLGGELLSQI--CN 95
           S+   + +   L   S  N       +     +K  + +    + N    E +S +  C 
Sbjct: 2   SIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRN----EAVSLLKECL 57

Query: 96  MESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQ 134
           +    +L L+  NLS S+P+       ++V++I+ N L 
Sbjct: 58  INQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI 93

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 80.2 bits (198), Expect = 6e-18
 Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 5/135 (3%)

Query: 2   SLTKLILRGNQLTGRLPTEI-GSFKELEYLDLS-ANRFNNSVPKSLGSLLKLHYLSLSNN 59
            L +L LR N +   +P+        L  LDL    +       +   L  L YL+L   
Sbjct: 148 KLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206

Query: 60  QFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEG 119
              +++P  L  LV L EL++S N            + SL+KL + ++ +S    N F+G
Sbjct: 207 NI-KDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG 264

Query: 120 MHGLSVIDISDNQLQ 134
           +  L  ++++ N L 
Sbjct: 265 LASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 71.7 bits (176), Expect = 5e-15
 Identities = 30/140 (21%), Positives = 50/140 (35%), Gaps = 14/140 (10%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
           N  +K++     L+  +P  I       YL+L  N        +   L  L  L L  N 
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQI-----CNMESLEKLNLSHNNLSGSIPN 115
             Q        L  L+ L+L  N      L+ I       +  L +L L +N +      
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDN-----WLTVIPSGAFEYLSKLRELWLRNNPIESIPSY 165

Query: 116 CFEGMHGLSVIDISD-NQLQ 134
            F  +  L  +D+ +  +L+
Sbjct: 166 AFNRVPSLMRLDLGELKKLE 185

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.8 bits (194), Expect = 8e-18
 Identities = 38/142 (26%), Positives = 47/142 (33%), Gaps = 11/142 (7%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKS----LGSLLKLHYLSLS 57
            L  L +           ++  F  L  LDLS N                   L  L+L 
Sbjct: 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209

Query: 58  NNQFVQ---ELPKELEKLVQLSELDLSHNFLGGELLSQIC-NMESLEKLNLSHNNLSGSI 113
           N                 VQL  LDLSHN L     +  C     L  LNLS   L   +
Sbjct: 210 NAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QV 268

Query: 114 PNCFEGMHGLSVIDISDNQLQG 135
           P        LSV+D+S N+L  
Sbjct: 269 PKGLP--AKLSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 71.5 bits (175), Expect = 3e-15
 Identities = 37/154 (24%), Positives = 61/154 (39%), Gaps = 13/154 (8%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSF--KELEYLDLSANRFNN--SVPKSLGSLLK--LHYL 54
           + L +L L   ++TG  P  +      +L  L+L    +    +    L   LK  L  L
Sbjct: 95  SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVL 154

Query: 55  SLSNNQFVQELPKELEKLVQLSELDLSHNFLGGE--LLSQIC--NMESLEKLNLSHNN-- 108
           S++    +    +++     LS LDLS N   GE  L+S +C     +L+ L L +    
Sbjct: 155 SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214

Query: 109 -LSGSIPNCFEGMHGLSVIDISDNQLQGPVPNST 141
             SG           L  +D+S N L+      +
Sbjct: 215 TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 67.6 bits (165), Expect = 9e-14
 Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 9/115 (7%)

Query: 2   SLTKLILRGNQLT---GRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLL-KLHYLSLS 57
           +L  L LR   +    G       +  +L+ LDLS N   ++          +L+ L+LS
Sbjct: 202 TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS 261

Query: 58  NNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGS 112
                +++PK L    +LS LDLS+N L  +       +  +  L+L  N    S
Sbjct: 262 FTGL-KQVPKGL--PAKLSVLDLSYNRL--DRNPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 65.7 bits (160), Expect = 4e-13
 Identities = 30/146 (20%), Positives = 52/146 (35%), Gaps = 12/146 (8%)

Query: 1   NSLTKLILRGNQLTGRLP--TEIGSFKE--LEYLDLSANRFNNSVPKSLGSLLKLHYLSL 56
             L  L LR      R     E+  + +  L+ L ++     N   + +     L  L L
Sbjct: 121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDL 180

Query: 57  SNNQFVQELPKE----LEKLVQLSELDLSHNF---LGGELLSQICNMESLEKLNLSHNNL 109
           S+N  + E          K   L  L L +       G   +       L+ L+LSHN+L
Sbjct: 181 SDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL 240

Query: 110 SGSIPN-CFEGMHGLSVIDISDNQLQ 134
             +      +    L+ +++S   L+
Sbjct: 241 RDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.1 bits (135), Expect = 8e-10
 Identities = 32/162 (19%), Positives = 55/162 (33%), Gaps = 10/162 (6%)

Query: 1   NSLTKLILRGNQLTGRLP-TEIGSFKELEYLDLSANRFNNSVPKSLGSLL---KLHYLSL 56
            SL  L+ R +        T+I     L+ L + A R  + +      +L    L  L+L
Sbjct: 43  RSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTL 102

Query: 57  SNNQFVQELPKELEKLV--QLSELDLSHNFLGGELLS----QICNMESLEKLNLSHNNLS 110
            N +     P  L +     L+ L+L +             Q      L+ L+++  +  
Sbjct: 103 ENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL 162

Query: 111 GSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALE 152
                       LS +D+SDN   G     +A        L+
Sbjct: 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ 204

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 78.5 bits (194), Expect = 2e-17
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 4/136 (2%)

Query: 1   NSLTKLILRGNQLTGRLPTEI-GSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNN 59
           N+   +  + + +  +LP  +  SF+++E L+L+  +       +      +  L +  N
Sbjct: 45  NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 103

Query: 60  QFVQELPKELEKLVQLSELDLSHNFLGGELLSQI-CNMESLEKLNLSHNNLSGSIPNCFE 118
                 P   + +  L+ L L  N L   L   I  N   L  L++S+NNL     + F+
Sbjct: 104 AIRYLPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 162

Query: 119 GMHGLSVIDISDNQLQ 134
               L  + +S N+L 
Sbjct: 163 ATTSLQNLQLSSNRLT 178

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 75.5 bits (186), Expect = 2e-16
 Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 13/133 (9%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           SL  L L  N+LT  +   +     L + ++S N        +L   + +  L  S+N  
Sbjct: 166 SLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSI 217

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
              +   +   V+L+ L L HN L     + + N   L +++LS+N L   + + F  M 
Sbjct: 218 -NVVRGPV--NVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 272

Query: 122 GLSVIDISDNQLQ 134
            L  + IS+N+L 
Sbjct: 273 RLERLYISNNRLV 285

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 68.5 bits (168), Expect = 5e-14
 Identities = 21/139 (15%), Positives = 46/139 (33%), Gaps = 5/139 (3%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKE-----LEYLDLSANRFNNSVPKSLGSLLKLHYLS 55
           N     +     +  +       F++      + +    +         L S  ++  L+
Sbjct: 16  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 75

Query: 56  LSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPN 115
           L++ Q  +           + +L +  N +         N+  L  L L  N+LS     
Sbjct: 76  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 135

Query: 116 CFEGMHGLSVIDISDNQLQ 134
            F     L+ + +S+N L+
Sbjct: 136 IFHNTPKLTTLSMSNNNLE 154

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 66.2 bits (162), Expect = 4e-13
 Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 7/110 (6%)

Query: 2   SLTKLILRGNQLTGRLPTEI-GSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
            L ++ L  N+L  ++        + LE L +S NR   ++      +  L  L LS+N 
Sbjct: 249 GLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNH 306

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLS 110
               + +   +  +L  L L HN +   L  ++    +L+ L LSHN+  
Sbjct: 307 L-LHVERNQPQFDRLENLYLDHNSI-VTL--KLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 65.5 bits (160), Expect = 6e-13
 Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 13/134 (9%)

Query: 2   SLTKLILRGNQLTGRLPTEI-GSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
            LT L+L  N L+  LP  I  +  +L  L +S N        +  +   L  L LS+N+
Sbjct: 118 LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 176

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
               +   L  +  L   ++S+N      LS +    ++E+L+ SHN+++  +       
Sbjct: 177 L-THVD--LSLIPSLFHANVSYNL-----LSTLAIPIAVEELDASHNSIN-VVRG--PVN 225

Query: 121 HGLSVIDISDNQLQ 134
             L+++ +  N L 
Sbjct: 226 VELTILKLQHNNLT 239

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.8 bits (148), Expect = 3e-11
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 17  LPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKE-LEKLVQL 75
           + + +        + +     +        +L     ++  N+   ++LP   L+   Q+
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM-RKLPAALLDSFRQV 71

Query: 76  SELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQ 134
             L+L+   +            +++KL +  N +    P+ F+ +  L+V+ +  N L 
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 57.7 bits (140), Expect = 3e-10
 Identities = 28/123 (22%), Positives = 44/123 (35%), Gaps = 9/123 (7%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
             L +L +  N+L   L         L+ LDLS N     V ++     +L  L L +N 
Sbjct: 272 QRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNS 329

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
               L   L     L  L LSHN      L  +    ++ +  +   +        ++  
Sbjct: 330 I-VTLK--LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQ--HCKIDYQLE 382

Query: 121 HGL 123
           HGL
Sbjct: 383 HGL 385

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 51.2 bits (123), Expect = 4e-08
 Identities = 10/95 (10%), Positives = 29/95 (30%)

Query: 39  NSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMES 98
             +  +L      + + +           E   L     +   ++ +     + + +   
Sbjct: 11  KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQ 70

Query: 99  LEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQL 133
           +E LNL+   +       F   H +  + +  N +
Sbjct: 71  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI 105

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 77.7 bits (192), Expect = 2e-17
 Identities = 30/151 (19%), Positives = 59/151 (39%), Gaps = 15/151 (9%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           +  ++ L GN+++        + + L  L L +N        +   L  L  L LS+N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 62  VQELPKE-LEKLVQLSELDLSHNFLGGELLSQI-----CNMESLEKLNLSHNNLSGSIP- 114
           ++ +       L +L  L L         L ++       + +L+ L L  N L  ++P 
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRC-----GLQELGPGLFRGLAALQYLYLQDNALQ-ALPD 146

Query: 115 NCFEGMHGLSVIDISDNQLQGPVPNSTAFRN 145
           + F  +  L+ + +  N++        AFR 
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPER--AFRG 175

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 70.0 bits (172), Expect = 9e-15
 Identities = 30/132 (22%), Positives = 46/132 (34%), Gaps = 14/132 (10%)

Query: 9   RGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKE 68
               L   +P  I      + + L  NR ++    S  +   L  L L +N   +     
Sbjct: 19  PQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA 75

Query: 69  LEKLVQLSELDLSHNFLGGELLSQI-----CNMESLEKLNLSHNNLSGSIP-NCFEGMHG 122
              L  L +LDLS N      L  +       +  L  L+L    L   +    F G+  
Sbjct: 76  FTGLALLEQLDLSDN----AQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAA 130

Query: 123 LSVIDISDNQLQ 134
           L  + + DN LQ
Sbjct: 131 LQYLYLQDNALQ 142

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.9 bits (143), Expect = 9e-11
 Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 12/114 (10%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFK---ELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSN 58
           +L  L L+ N L   LP    +F+    L +L L  NR ++   ++   L  L  L L  
Sbjct: 130 ALQYLYLQDNALQ-ALPD--DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186

Query: 59  NQFVQELPKELEKLVQLSELDLSHN---FLGGELLSQICNMESLEKLNLSHNNL 109
           N+     P     L +L  L L  N    L  E L+    + +L+ L L+ N  
Sbjct: 187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA---PLRALQYLRLNDNPW 237

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 78.0 bits (192), Expect = 4e-17
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 4/136 (2%)

Query: 1   NSLTKLILRGNQLTGRLPTEI-GSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNN 59
           N+   +  + + +  +LP  +  SF+++E L+L+  +       +      +  L +  N
Sbjct: 51  NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 109

Query: 60  QFVQELPKELEKLVQLSELDLSHNFLGGELLSQI-CNMESLEKLNLSHNNLSGSIPNCFE 118
                 P   + +  L+ L L  N L   L   I  N   L  L++S+NNL     + F+
Sbjct: 110 AIRYLPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 168

Query: 119 GMHGLSVIDISDNQLQ 134
               L  + +S N+L 
Sbjct: 169 ATTSLQNLQLSSNRLT 184

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 74.2 bits (182), Expect = 7e-16
 Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 13/133 (9%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           SL  L L  N+LT  +   +     L + ++S N        +L   + +  L  S+N  
Sbjct: 172 SLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSI 223

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
              +   +   V+L+ L L HN L     + + N   L +++LS+N L   + + F  M 
Sbjct: 224 -NVVRGPV--NVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278

Query: 122 GLSVIDISDNQLQ 134
            L  + IS+N+L 
Sbjct: 279 RLERLYISNNRLV 291

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 67.6 bits (165), Expect = 2e-13
 Identities = 21/139 (15%), Positives = 46/139 (33%), Gaps = 5/139 (3%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKE-----LEYLDLSANRFNNSVPKSLGSLLKLHYLS 55
           N     +     +  +       F++      + +    +         L S  ++  L+
Sbjct: 22  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 81

Query: 56  LSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPN 115
           L++ Q  +           + +L +  N +         N+  L  L L  N+LS     
Sbjct: 82  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 141

Query: 116 CFEGMHGLSVIDISDNQLQ 134
            F     L+ + +S+N L+
Sbjct: 142 IFHNTPKLTTLSMSNNNLE 160

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 64.9 bits (158), Expect = 1e-12
 Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 5/109 (4%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
            L ++ L  N+L   +       + LE L +S NR   ++      +  L  L LS+N  
Sbjct: 255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL 313

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLS 110
              + +   +  +L  L L HN +   L  ++    +L+ L LSHN+  
Sbjct: 314 -LHVERNQPQFDRLENLYLDHNSI-VTL--KLSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 64.6 bits (157), Expect = 1e-12
 Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 13/134 (9%)

Query: 2   SLTKLILRGNQLTGRLPTEI-GSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
            LT L+L  N L+  LP  I  +  +L  L +S N        +  +   L  L LS+N+
Sbjct: 124 LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
               +   L  +  L   ++S+N     LLS +    ++E+L+ SHN+++          
Sbjct: 183 L-THVD--LSLIPSLFHANVSYN-----LLSTLAIPIAVEELDASHNSINVVRGPVNV-- 232

Query: 121 HGLSVIDISDNQLQ 134
             L+++ +  N L 
Sbjct: 233 -ELTILKLQHNNLT 245

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 57.2 bits (138), Expect = 5e-10
 Identities = 27/119 (22%), Positives = 41/119 (34%), Gaps = 7/119 (5%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
             L +L +  N+L   L         L+ LDLS N     V ++     +L  L L +N 
Sbjct: 278 QRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNS 335

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEG 119
               L   L     L  L LSHN      L  +    ++ +  +   +    I    E 
Sbjct: 336 I-VTLK--LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEH 389

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.8 bits (116), Expect = 3e-07
 Identities = 10/95 (10%), Positives = 29/95 (30%)

Query: 39  NSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMES 98
             +  +L      + + +           E   L     +   ++ +     + + +   
Sbjct: 17  KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQ 76

Query: 99  LEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQL 133
           +E LNL+   +       F   H +  + +  N +
Sbjct: 77  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI 111

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 4/85 (4%), Positives = 28/85 (32%)

Query: 50  KLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNL 109
           +  Y         + +   L+      ++ +           +   + + + +   ++ +
Sbjct: 4   QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM 63

Query: 110 SGSIPNCFEGMHGLSVIDISDNQLQ 134
                   +    + +++++D Q++
Sbjct: 64  RKLPAALLDSFRQVELLNLNDLQIE 88

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 77.0 bits (190), Expect = 4e-17
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 19/142 (13%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFK--ELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSN 58
            ++  + + GN L      E G+F   +L YL +S  +    +PK L     L+ L L +
Sbjct: 147 RNMNCIEMGGNPLE-NSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLDH 202

Query: 59  NQFVQELPKE-LEKLVQLSELDLSHNFLGGELLSQI-----CNMESLEKLNLSHNNLSGS 112
           N+  Q +  E L +  +L  L L HN      +  I       + +L +L+L +N LS  
Sbjct: 203 NKI-QAIELEDLLRYSKLYRLGLGHN-----QIRMIENGSLSFLPTLRELHLDNNKLS-R 255

Query: 113 IPNCFEGMHGLSVIDISDNQLQ 134
           +P     +  L V+ +  N + 
Sbjct: 256 VPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 72.7 bits (179), Expect = 1e-15
 Identities = 34/153 (22%), Positives = 61/153 (39%), Gaps = 12/153 (7%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
            L  L +   +LT  +P      + L  L L  N+      + L    KL+ L L +NQ 
Sbjct: 173 KLNYLRISEAKLT-GIPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ- 228

Query: 62  VQELPKE-LEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
           ++ +    L  L  L EL L +N L   + + + +++ L+ + L  NN++    N F  +
Sbjct: 229 IRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV 287

Query: 121 HG------LSVIDISDNQLQGPVPNSTAFRNAP 147
                    + I + +N +         FR   
Sbjct: 288 GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVT 320

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 72.4 bits (178), Expect = 2e-15
 Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 16/140 (11%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKE---LEYLDLSANRFNNS-VPKSLGSLLKLHYLSLS 57
           SL +L +  N++  ++P   G F     +  +++  N   NS         LKL+YL +S
Sbjct: 124 SLVELRIHDNRIR-KVPK--GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRIS 180

Query: 58  NNQFVQELPKELEKLVQLSELDLSHN---FLGGELLSQICNMESLEKLNLSHNNLSGSIP 114
             +    +PK+L     L+EL L HN    +  E L        L +L L HN +     
Sbjct: 181 EAKL-TGIPKDL--PETLNELHLDHNKIQAIELEDLL---RYSKLYRLGLGHNQIRMIEN 234

Query: 115 NCFEGMHGLSVIDISDNQLQ 134
                +  L  + + +N+L 
Sbjct: 235 GSLSFLPTLRELHLDNNKLS 254

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 70.8 bits (174), Expect = 6e-15
 Identities = 35/147 (23%), Positives = 54/147 (36%), Gaps = 12/147 (8%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
            L  +      L   +P EI    +   LDL  N  +         L  L+ L L NN+ 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 62  VQELPKELEKLVQLSELDLSHNFLG---GELLSQICNMESLEKLNLSHNNLSGSIPNCFE 118
            +   K    L +L +L +S N L      L S      SL +L +  N +       F 
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS------SLVELRIHDNRIRKVPKGVFS 144

Query: 119 GMHGLSVIDISDNQLQGPVPNSTAFRN 145
           G+  ++ I++  N L+       AF  
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDG 171

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 70.8 bits (174), Expect = 7e-15
 Identities = 28/140 (20%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 2   SLTKLILRGNQLTGRLPTEI-GSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
           +L +L L  N++   +  E    + +L  L L  N+       SL  L  L  L L NN+
Sbjct: 194 TLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGG------ELLSQICNMESLEKLNLSHNNLSGSI- 113
               +P  L  L  L  + L  N +          +           ++L +N +     
Sbjct: 253 L-SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV 311

Query: 114 -PNCFEGMHGLSVIDISDNQ 132
            P  F  +     I   + +
Sbjct: 312 QPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 65.8 bits (161), Expect = 4e-13
 Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 12/137 (8%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
             T L L+ N ++     +    + L  L L  N+ +    K+   L KL  L +S N  
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114

Query: 62  VQELPKELEKLVQLSELDLSHN---FLGGELLSQICNMESLEKLNLSHNNLSGSI--PNC 116
             E+P  L     L EL +  N    +   + S    + ++  + +  N L  S   P  
Sbjct: 115 -VEIPPNL--PSSLVELRIHDNRIRKVPKGVFS---GLRNMNCIEMGGNPLENSGFEPGA 168

Query: 117 FEGMHGLSVIDISDNQL 133
           F+G+  L+ + IS+ +L
Sbjct: 169 FDGLK-LNYLRISEAKL 184

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 77.2 bits (190), Expect = 5e-17
 Identities = 36/143 (25%), Positives = 57/143 (39%), Gaps = 13/143 (9%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSF---KELEYLDLSANRFNNSVPKSLGSLLKLHYLSLS 57
            +L  L+L  N L   + +   +F     L YLDLS+N  +         L  L  L L 
Sbjct: 64  TNLHSLLLSHNHLN-FISS--EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120

Query: 58  NNQFVQELPKE-LEKLVQLSELDLSHN---FLGGELLSQICNMESLEKLNLSHNNLSGSI 113
           NN  +  + +   E + QL +L LS N       EL+     +  L  L+LS N L    
Sbjct: 121 NNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179

Query: 114 PNCFEGMHGLSV--IDISDNQLQ 134
               + +       + + +N L+
Sbjct: 180 LTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 69.9 bits (171), Expect = 2e-14
 Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 20/145 (13%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSF---KELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSN 58
               L L  N L+ RL  E  +      L  L LS N  N    ++   +  L YL LS+
Sbjct: 40  YTALLDLSHNNLS-RLRAE-WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97

Query: 59  NQFVQELPKE-LEKLVQLSELDLSHNFLGGELLSQI-----CNMESLEKLNLSHNNLSGS 112
           N  +  L +     L  L  L L +N      +  +      +M  L+KL LS N +S  
Sbjct: 98  NH-LHTLDEFLFSDLQALEVLLLYNN-----HIVVVDRNAFEDMAQLQKLYLSQNQISRF 151

Query: 113 IPNCFEGMHGLS---VIDISDNQLQ 134
                +  + L    ++D+S N+L+
Sbjct: 152 PVELIKDGNKLPKLMLLDLSSNKLK 176

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 77.3 bits (191), Expect = 6e-17
 Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 16/134 (11%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
           + L  + +  N L  +LP    S   LE++    N+        L +L  L  +   NN 
Sbjct: 153 SFLKIIDVDNNSLK-KLPDLPPS---LEFIAAGNNQL--EELPELQNLPFLTAIYADNNS 206

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
             ++LP      + L  +   +N L  E L ++ N+  L  +   +N L  ++P   +  
Sbjct: 207 L-KKLPDLP---LSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLP---DLP 256

Query: 121 HGLSVIDISDNQLQ 134
             L  +++ DN L 
Sbjct: 257 PSLEALNVRDNYLT 270

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 74.6 bits (184), Expect = 5e-16
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 18/134 (13%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
               +L L    L+  LP        LE L  S N     +P+   SL  L   + +   
Sbjct: 71  RQAHELELNNLGLS-SLPELPP---HLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 125

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
              +LP  LE       L +S+N L  E L ++ N   L+ +++ +N+L   +P   +  
Sbjct: 126 L-SDLPPLLE------YLGVSNNQL--EKLPELQNSSFLKIIDVDNNSLK-KLP---DLP 172

Query: 121 HGLSVIDISDNQLQ 134
             L  I   +NQL+
Sbjct: 173 PSLEFIAAGNNQLE 186

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 73.1 bits (180), Expect = 2e-15
 Identities = 31/150 (20%), Positives = 53/150 (35%), Gaps = 26/150 (17%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPK---------------SLG 46
            L  L+   N LT  LP    S K L   + +    ++  P                 L 
Sbjct: 92  HLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQ 150

Query: 47  SLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSH 106
           +   L  + + NN   ++LP        L  +   +N L  E L ++ N+  L  +   +
Sbjct: 151 NSSFLKIIDVDNNSL-KKLPDLPP---SLEFIAAGNNQL--EELPELQNLPFLTAIYADN 204

Query: 107 NNLSGSIPNCFEGMHGLSVIDISDNQLQGP 136
           N+L   +P   +    L  I   +N L+  
Sbjct: 205 NSLK-KLP---DLPLSLESIVAGNNILEEL 230

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 70.8 bits (174), Expect = 1e-14
 Identities = 32/146 (21%), Positives = 52/146 (35%), Gaps = 26/146 (17%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLL------------ 49
            L + +   + LT  +P E  + K       + + +  + P   G               
Sbjct: 12  FLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD 70

Query: 50  -KLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNN 108
            + H L L+N      LP+       L  L  S N L  EL     +++SL   N +   
Sbjct: 71  RQAHELELNNLGL-SSLPELPP---HLESLVASCNSL-TELPELPQSLKSLLVDNNNLKA 125

Query: 109 LSGSIPNCFEGMHGLSVIDISDNQLQ 134
           LS   P        L  + +S+NQL+
Sbjct: 126 LSDLPPL-------LEYLGVSNNQLE 144

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 66.6 bits (163), Expect = 3e-13
 Identities = 31/146 (21%), Positives = 54/146 (36%), Gaps = 24/146 (16%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           SL  ++   N L      E+ +   L  +    N    ++P    SL     L++ +N  
Sbjct: 216 SLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSL---EALNVRDNYL 269

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGEL------------LSQICN-MESLEKLNLSHNN 108
             +LP+  + L  L   +   + L                +  +C+   SLE+LN+S+N 
Sbjct: 270 -TDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK 328

Query: 109 LSGSIPNCFEGMHGLSVIDISDNQLQ 134
           L   +P        L  +  S N L 
Sbjct: 329 LI-ELP---ALPPRLERLIASFNHLA 350

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.9 bits (151), Expect = 1e-11
 Identities = 31/149 (20%), Positives = 49/149 (32%), Gaps = 31/149 (20%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           SL +L +  N+L   LP        LE L  S N     VP+   +L +LH   +  N  
Sbjct: 318 SLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPELPQNLKQLH---VEYNPL 369

Query: 62  VQELPKELEKLVQLS----------------ELDLSHNFLGGELLSQICN-MESLEKLNL 104
            +E P   E +  L                 +L +  N      L +  +  ES+E L +
Sbjct: 370 -REFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN-----PLREFPDIPESVEDLRM 423

Query: 105 SHNNLSGSIPNCFEGMHGLSVIDISDNQL 133
           +   +        E    L       +  
Sbjct: 424 NSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 59.6 bits (145), Expect = 7e-11
 Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 21/133 (15%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           +L  L    N++   L     S   LE L++S N+    +P       +L  L  S N  
Sbjct: 298 NLYYLNASSNEIR-SLCDLPPS---LEELNVSNNKLI-ELPALPP---RLERLIASFNHL 349

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
             E+P+  + L    +L + +N L  E      ++E     +L  N+    +P   E   
Sbjct: 350 -AEVPELPQNL---KQLHVEYNPLR-EFPDIPESVE-----DLRMNSHLAEVP---ELPQ 396

Query: 122 GLSVIDISDNQLQ 134
            L  + +  N L+
Sbjct: 397 NLKQLHVETNPLR 409

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 21/125 (16%), Positives = 37/125 (29%), Gaps = 25/125 (20%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLH--------- 52
            L +LI   N L   +P    +   L+ L +  N      P    S+  L          
Sbjct: 338 RLERLIASFNHLA-EVPELPQN---LKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVP 392

Query: 53  -------YLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLS 105
                   L +  N   +E P   E    + +L ++   +           + LE     
Sbjct: 393 ELPQNLKQLHVETNPL-REFPDIPE---SVEDLRMNSERVVDPYEFAHETTDKLEDDVFE 448

Query: 106 HNNLS 110
           H++  
Sbjct: 449 HHHHH 453

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 76.7 bits (189), Expect = 9e-17
 Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 6/138 (4%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPK-SLGSLLKLHYLSLSNNQ 60
            +  + L  N +     T     ++L++L +        +   +   L  L  L L  NQ
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 61  FVQELPKE-LEKLVQLSELDLSHNFLGGELLSQIC--NMESLEKLNLSHNNLSGSIPNC- 116
           F  +L       L  L  L L+   L G +LS      + SLE L L  NN+    P   
Sbjct: 91  F-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 117 FEGMHGLSVIDISDNQLQ 134
           F  M    V+D++ N+++
Sbjct: 150 FLNMRRFHVLDLTFNKVK 167

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 69.8 bits (171), Expect = 2e-14
 Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 4/122 (3%)

Query: 27  LEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKEL-EKLVQLSELDLSHNFL 85
           + Y+DLS N        S   L  L +L +        +       L  L  L L +N  
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 86  GGELLSQICNMESLEKLNLSHNNLSGSI--PNCFEGMHGLSVIDISDNQLQGPVPNSTAF 143
                     + +LE L L+  NL G++   N F+ +  L ++ + DN ++  +  ++ F
Sbjct: 92  LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK-IQPASFF 150

Query: 144 RN 145
            N
Sbjct: 151 LN 152

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 69.8 bits (171), Expect = 3e-14
 Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 12/140 (8%)

Query: 1   NSLTKLILRGNQLTGRLPTEI-GSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNN 59
           + +    L  +++   L   +   F +LE L L+ N  N     +   L  L  L+LS N
Sbjct: 275 SGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333

Query: 60  QFVQELPKEL-EKLVQLSELDLSHN---FLGGELLSQICNMESLEKLNLSHNNLSGSIP- 114
                +   + E L +L  LDLS+N    LG +       + +L++L L  N L  S+P 
Sbjct: 334 FL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL---GLPNLKELALDTNQLK-SVPD 388

Query: 115 NCFEGMHGLSVIDISDNQLQ 134
             F+ +  L  I +  N   
Sbjct: 389 GIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 61.3 bits (149), Expect = 2e-11
 Identities = 26/161 (16%), Positives = 42/161 (26%), Gaps = 4/161 (2%)

Query: 2   SLTKLILRGNQLTGRLPTEI-GSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
            L  L +        +          L  L L  N+F      +   L  L  L+L+   
Sbjct: 55  DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCN 114

Query: 61  F-VQELPKEL-EKLVQLSELDLSHNFLGG-ELLSQICNMESLEKLNLSHNNLSGSIPNCF 117
                L     + L  L  L L  N +   +  S   NM     L+L+ N +        
Sbjct: 115 LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174

Query: 118 EGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELC 158
               G     +  + +     N              N  + 
Sbjct: 175 LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSIT 215

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 32/154 (20%), Positives = 52/154 (33%), Gaps = 27/154 (17%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYL-------------DLSANRFNNSVPKSLGSL 48
           S+T L L GN     +            +                   F +    +   L
Sbjct: 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGL 272

Query: 49  L--KLHYLSLSNNQFVQELPKEL-EKLVQLSELDLSHNFLGGELLSQI-----CNMESLE 100
               +    LS ++    L K +      L +L L+ N      +++I       +  L 
Sbjct: 273 EASGVKTCDLSKSKI-FALLKSVFSHFTDLEQLTLAQN-----EINKIDDNAFWGLTHLL 326

Query: 101 KLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQ 134
           KLNLS N L       FE +  L V+D+S N ++
Sbjct: 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 54.0 bits (130), Expect = 6e-09
 Identities = 28/159 (17%), Positives = 54/159 (33%), Gaps = 26/159 (16%)

Query: 2   SLTKLILRGNQLTGRLPTEI-GSFKELEYLDLSANRFNNSVPKSLGSLLKLH-------- 52
           SL  L+LR N +    P     + +    LDL+ N+  +   + L +    H        
Sbjct: 130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189

Query: 53  --YLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKL-------- 102
                ++      E      K   ++ LDLS N     +  +  +  +  K+        
Sbjct: 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249

Query: 103 -----NLSHNNLSGSIPNCFEGMH--GLSVIDISDNQLQ 134
                +  H N        F+G+   G+   D+S +++ 
Sbjct: 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF 288

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 53.6 bits (129), Expect = 8e-09
 Identities = 34/158 (21%), Positives = 54/158 (34%), Gaps = 25/158 (15%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFK--------ELEYLDLSANRFNNSVPKSLGSLLKLH 52
              T L L    L       +G  K         +  LDLS N F  S+ K     +   
Sbjct: 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT 239

Query: 53  YL-------------SLSNNQFVQELPKELEKLV--QLSELDLSHNFLGGELLSQIC-NM 96
            +             S  +  F        + L    +   DLS + +   LL  +  + 
Sbjct: 240 KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI-FALLKSVFSHF 298

Query: 97  ESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQ 134
             LE+L L+ N ++    N F G+  L  +++S N L 
Sbjct: 299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 25/161 (15%), Positives = 51/161 (31%), Gaps = 29/161 (18%)

Query: 1   NSLTKLILRGNQLTGRLPTEI---GSFKELEYLDLSANRFNNSVPKSLGS--------LL 49
                L L  N++   +  E       K    L LS+    +     LG           
Sbjct: 154 RRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT 212

Query: 50  KLHYLSLSNNQFVQELPK---ELEKLVQLSELDLSHNFLGGELLSQIC------------ 94
            +  L LS N F + + K   +     ++  L LS+++  G                   
Sbjct: 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGL 272

Query: 95  NMESLEKLNLSHNNLSGSIPNC-FEGMHGLSVIDISDNQLQ 134
               ++  +LS + +  ++    F     L  + ++ N++ 
Sbjct: 273 EASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN 312

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 75.8 bits (187), Expect = 1e-16
 Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 12/154 (7%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
             L+ + +    +T  +P   G    L  L L  N+       SL  L  L  L LS N 
Sbjct: 171 KKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227

Query: 61  FVQELPKE-LEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSG------SI 113
            +  +    L     L EL L++N L  ++   + + + ++ + L +NN+S         
Sbjct: 228 -ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285

Query: 114 PNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAP 147
           P         S + +  N +Q      + FR   
Sbjct: 286 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 319

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 75.0 bits (185), Expect = 2e-16
 Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 10/138 (7%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSF---KELEYLDLSANRFNNSVPKSLGSLLKLHYLSLS 57
           N +  + L  N L      E G+F   K+L Y+ ++      ++P+  G    L  L L 
Sbjct: 145 NQMIVVELGTNPLK-SSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLD 200

Query: 58  NNQFVQELPKE-LEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNC 116
            N+   ++    L+ L  L++L LS N +       + N   L +L+L++N L   +P  
Sbjct: 201 GNKI-TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG 258

Query: 117 FEGMHGLSVIDISDNQLQ 134
                 + V+ + +N + 
Sbjct: 259 LADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 73.1 bits (180), Expect = 1e-15
 Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 12/149 (8%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
            L  +      L  ++P ++    +   LDL  N+          +L  LH L L NN+ 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 62  VQELPKELEKLVQLSELDLSHNFLG---GELLSQICNMESLEKLNLSHNNLSGSIPNCFE 118
            +  P     LV+L  L LS N L     ++        +L++L +  N ++    + F 
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPK------TLQELRVHENEITKVRKSVFN 142

Query: 119 GMHGLSVIDISDNQLQGPVPNSTAFRNAP 147
           G++ + V+++  N L+     + AF+   
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQGMK 171

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 72.3 bits (178), Expect = 2e-15
 Identities = 29/141 (20%), Positives = 59/141 (41%), Gaps = 17/141 (12%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKE---LEYLDLSANRFNNSV--PKSLGSLLKLHYLSL 56
           +L +L +  N++T ++      F     +  ++L  N   +S     +   + KL Y+ +
Sbjct: 122 TLQELRVHENEIT-KVRK--SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178

Query: 57  SNNQFVQELPKELEKLVQLSELDLSHN---FLGGELLSQICNMESLEKLNLSHNNLSGSI 113
           ++      +P+ L     L+EL L  N    +    L     + +L KL LS N++S   
Sbjct: 179 ADTNI-TTIPQGL--PPSLTELHLDGNKITKVDAASLK---GLNNLAKLGLSFNSISAVD 232

Query: 114 PNCFEGMHGLSVIDISDNQLQ 134
                    L  + +++N+L 
Sbjct: 233 NGSLANTPHLRELHLNNNKLV 253

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 70.0 bits (172), Expect = 1e-14
 Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 11/139 (7%)

Query: 2   SLTKLILRGNQLTGRLPTEI-GSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
           SLT+L L GN++T ++          L  L LS N  +     SL +   L  L L+NN+
Sbjct: 193 SLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGG------ELLSQICNMESLEKLNLSHNNLSGSI- 113
              ++P  L     +  + L +N +                  S   ++L  N +     
Sbjct: 252 L-VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI 310

Query: 114 -PNCFEGMHGLSVIDISDN 131
            P+ F  ++  + + + + 
Sbjct: 311 QPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 22/115 (19%), Positives = 37/115 (32%), Gaps = 9/115 (7%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
           N+L KL L  N ++      + +   L  L L+ N+    VP  L     +  + L NN 
Sbjct: 216 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNN 274

Query: 61  FVQ------ELPKELEKLVQLSELDLSHNFLGGELLSQ--ICNMESLEKLNLSHN 107
                      P    K    S + L  N +    +       +     + L + 
Sbjct: 275 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 76.4 bits (188), Expect = 1e-16
 Identities = 30/137 (21%), Positives = 60/137 (43%), Gaps = 5/137 (3%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
           +++       +                 +LD S N   ++V ++ G L +L  L L  NQ
Sbjct: 300 SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359

Query: 61  F--VQELPKELEKLVQLSELDLSHNFLGGELLSQIC-NMESLEKLNLSHNNLSGSIPNCF 117
              + ++ +   ++  L +LD+S N +  +     C   +SL  LN+S N L+ +I  C 
Sbjct: 360 LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419

Query: 118 EGMHGLSVIDISDNQLQ 134
                + V+D+  N+++
Sbjct: 420 P--PRIKVLDLHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 70.3 bits (172), Expect = 2e-14
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 10/138 (7%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSF---KELEYLDLSANRFNNSVPKSL-GSLLKLHYLSLS 57
            L  LIL+ NQL   L          K L+ LD+S N  +    K        L  L++S
Sbjct: 349 ELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407

Query: 58  NNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNC- 116
           +N     + + L    ++  LDL  N +   +  Q+  +E+L++LN++ N L  S+P+  
Sbjct: 408 SNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGI 463

Query: 117 FEGMHGLSVIDISDNQLQ 134
           F+ +  L  I +  N   
Sbjct: 464 FDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 68.0 bits (166), Expect = 1e-13
 Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 4/133 (3%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
             T L +  N ++    ++I S  +L  L +S NR             +L YL LS+N+ 
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81

Query: 62  VQELPKELEKLVQLSELDLSHNFLGG-ELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
             ++       V L  LDLS N      +  +  NM  L+ L LS  +L  S       +
Sbjct: 82  -VKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL 138

Query: 121 HGLSVIDISDNQL 133
           +   V+ +     
Sbjct: 139 NISKVLLVLGETY 151

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 67.6 bits (165), Expect = 1e-13
 Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 11/130 (8%)

Query: 8   LRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPK 67
              N L   +P ++   ++   L++S N  +      + SL KL  L +S+N+  Q L  
Sbjct: 7   RSKNGLI-HVPKDL--SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRI-QYLDI 62

Query: 68  E-LEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNC--FEGMHGLS 124
              +   +L  LDLSHN L    +S      +L+ L+LS N    ++P C  F  M  L 
Sbjct: 63  SVFKFNQELEYLDLSHNKLVK--IS-CHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLK 118

Query: 125 VIDISDNQLQ 134
            + +S   L+
Sbjct: 119 FLGLSTTHLE 128

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 62.6 bits (152), Expect = 8e-12
 Identities = 25/144 (17%), Positives = 45/144 (31%), Gaps = 4/144 (2%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
            S++ + L+G            S K L    + ++ F             ++  + + + 
Sbjct: 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG 311

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNC---F 117
                     K+     LD S+N L   +     ++  LE L L  N L   +       
Sbjct: 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMT 370

Query: 118 EGMHGLSVIDISDNQLQGPVPNST 141
             M  L  +DIS N +        
Sbjct: 371 TQMKSLQQLDISQNSVSYDEKKGD 394

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 60.6 bits (147), Expect = 3e-11
 Identities = 26/144 (18%), Positives = 52/144 (36%), Gaps = 7/144 (4%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           +L+   +  +            F  +   + + +            +    +L  SNN  
Sbjct: 277 ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL 336

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQIC----NMESLEKLNLSHNNLSGSIP-NC 116
              + +    L +L  L L  N L  + LS+I      M+SL++L++S N++S       
Sbjct: 337 TDTVFENCGHLTELETLILQMNQL--KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394

Query: 117 FEGMHGLSVIDISDNQLQGPVPNS 140
                 L  +++S N L   +   
Sbjct: 395 CSWTKSLLSLNMSSNILTDTIFRC 418

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 53.7 bits (129), Expect = 8e-09
 Identities = 21/151 (13%), Positives = 46/151 (30%), Gaps = 8/151 (5%)

Query: 3   LTKLILRGNQLTGRLPTEIGSF---KELEYLDLSANRFN-----NSVPKSLGSLLKLHYL 54
           L+ L L   + T      I        + Y  +S  +            S  SL  L   
Sbjct: 222 LSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIH 281

Query: 55  SLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIP 114
            + ++ F        E    ++  + + +      +     +     L+ S+N L+ ++ 
Sbjct: 282 QVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVF 341

Query: 115 NCFEGMHGLSVIDISDNQLQGPVPNSTAFRN 145
                +  L  + +  NQL+     +     
Sbjct: 342 ENCGHLTELETLILQMNQLKELSKIAEMTTQ 372

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 22/132 (16%), Positives = 44/132 (33%), Gaps = 3/132 (2%)

Query: 2   SLTKLILRGNQLTG-RLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
           +L  L L  N      +  E G+  +L++L LS      S    +  L     L +    
Sbjct: 91  NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGET 150

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
           + ++   + E L   +   L   F   +    I ++      NL  +N+   + +     
Sbjct: 151 YGEKE--DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY 208

Query: 121 HGLSVIDISDNQ 132
               +  +  N 
Sbjct: 209 FLSILAKLQTNP 220

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 75.6 bits (185), Expect = 3e-16
 Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 6/125 (4%)

Query: 11  NQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELE 70
           ++           + ++  L L+      +V   L  LL + +L LS+N+  + LP  L 
Sbjct: 427 SKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRL-RALPPALA 483

Query: 71  KLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSG-SIPNCFEGMHGLSVIDIS 129
            L  L  L  S N L  E +  + N+  L++L L +N L   +          L ++++ 
Sbjct: 484 ALRCLEVLQASDNAL--ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541

Query: 130 DNQLQ 134
            N L 
Sbjct: 542 GNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.4 bits (112), Expect = 1e-06
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 4/75 (5%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNN-SVPKSLGSLLKLHYLSLSNNQ 60
            L  L    N L   +   + +   L+ L L  NR    +  + L S  +L  L+L  N 
Sbjct: 487 CLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544

Query: 61  FVQELPKELEKLVQL 75
            + +     E+L ++
Sbjct: 545 -LCQEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.0 bits (103), Expect = 2e-05
 Identities = 28/142 (19%), Positives = 58/142 (40%), Gaps = 22/142 (15%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
             L +  L   + T  L +E+ S KEL+ L+          P++   LL +  L +    
Sbjct: 349 EQLFRCELSVEKST-VLQSELESCKELQELE----------PENKWCLLTII-LLMRALD 396

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQ--------ICNMESLEKLNLSHNNLSGS 112
            +    + L+    L  +D        +L S+              +  L+L+H +L+  
Sbjct: 397 PLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-V 455

Query: 113 IPNCFEGMHGLSVIDISDNQLQ 134
           + +  E +  ++ +D+S N+L+
Sbjct: 456 LCH-LEQLLLVTHLDLSHNRLR 476

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 75.5 bits (185), Expect = 3e-16
 Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 10/133 (7%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
           NS+ ++I   + +   +   I     +  L L+ N+  +  P  L +L  L +L L  N+
Sbjct: 43  NSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK 98

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
            +++L   L+ L +L  L L HN +    ++ + ++  LE L L +N ++  I      +
Sbjct: 99  -IKDLS-SLKDLKKLKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKIT-DITV-LSRL 152

Query: 121 HGLSVIDISDNQL 133
             L  + + DNQ+
Sbjct: 153 TKLDTLSLEDNQI 165

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 75.5 bits (185), Expect = 3e-16
 Identities = 34/140 (24%), Positives = 55/140 (39%), Gaps = 8/140 (5%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
             L  L L  N ++      +    +LE L L  N+  +     L  L KL  LSL +NQ
Sbjct: 109 KKLKSLSLEHNGIS--DINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQ 164

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
            + ++   L  L +L  L LS N +    L  +  +++L+ L L          N    +
Sbjct: 165 -ISDIV-PLAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNL 220

Query: 121 HGLSVIDISDNQLQGPVPNS 140
              + +  +D  L  P   S
Sbjct: 221 VVPNTVKNTDGSLVTPEIIS 240

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.1 bits (176), Expect = 5e-15
 Identities = 25/132 (18%), Positives = 57/132 (43%), Gaps = 10/132 (7%)

Query: 3   LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFV 62
             K  L+   +T  +         ++ +  + +   +   + +  L  +  L L+ N+ +
Sbjct: 23  TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNK-L 77

Query: 63  QELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHG 122
            ++ K L  L  L  L L  N +  + LS + +++ L+ L+L HN +S  I      +  
Sbjct: 78  TDI-KPLTNLKNLGWLFLDENKI--KDLSSLKDLKKLKSLSLEHNGIS-DING-LVHLPQ 132

Query: 123 LSVIDISDNQLQ 134
           L  + + +N++ 
Sbjct: 133 LESLYLGNNKIT 144

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 54.0 bits (129), Expect = 7e-09
 Identities = 23/130 (17%), Positives = 46/130 (35%), Gaps = 6/130 (4%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
            L  L L  NQ++      +    +L+ L LS N  ++   ++L  L  L  L L + + 
Sbjct: 154 KLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQEC 209

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
           + +       LV  + +  +   L       I +    EK N+  +    +    F    
Sbjct: 210 LNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQ 267

Query: 122 GLSVIDISDN 131
            +++      
Sbjct: 268 PVTIGKAKAR 277

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 46.3 bits (109), Expect = 3e-06
 Identities = 5/81 (6%), Positives = 34/81 (41%), Gaps = 6/81 (7%)

Query: 54  LSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSI 113
               +   ++++    +   +  + +L    +          + S++++  +++++  S+
Sbjct: 4   TITVSTP-IKQIFP-DDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SV 58

Query: 114 PNCFEGMHGLSVIDISDNQLQ 134
               + +  ++ + ++ N+L 
Sbjct: 59  QG-IQYLPNVTKLFLNGNKLT 78

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 73.2 bits (180), Expect = 8e-16
 Identities = 45/138 (32%), Positives = 66/138 (47%), Gaps = 13/138 (9%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
            LT+L L   +LT +L  + G+   L  LDLS N+   S+P    +L  L  L +S N+ 
Sbjct: 56  RLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112

Query: 62  VQELPKEL-EKLVQLSELDLSHN---FLGGELLSQICNMESLEKLNLSHNNLSGSIP-NC 116
              LP      L +L EL L  N    L   LL+       LEKL+L++NNL+  +P   
Sbjct: 113 -TSLPLGALRGLGELQELYLKGNELKTLPPGLLT---PTPKLEKLSLANNNLT-ELPAGL 167

Query: 117 FEGMHGLSVIDISDNQLQ 134
             G+  L  + + +N L 
Sbjct: 168 LNGLENLDTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 68.2 bits (167), Expect = 4e-14
 Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 8/134 (5%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           S  ++      LT  LP ++   K+   L LS N        +L    +L  L+L   + 
Sbjct: 11  SHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE- 66

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIP-NCFEGM 120
           + +L      L  L  LDLSHN L   L      + +L  L++S N L+ S+P     G+
Sbjct: 67  LTKLQ-VDGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGL 123

Query: 121 HGLSVIDISDNQLQ 134
             L  + +  N+L+
Sbjct: 124 GELQELYLKGNELK 137

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 7/61 (11%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFK---ELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSN 58
            L KL L  N LT  LP   G       L+ L L  N    ++PK       L +  L  
Sbjct: 149 KLEKLSLANNNLT-ELPA--GLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHG 204

Query: 59  N 59
           N
Sbjct: 205 N 205

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 71.3 bits (175), Expect = 5e-15
 Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 10/133 (7%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
             +T+L L GN L     + I   + ++ LDL++ +  +  P  L  L  L  L L  NQ
Sbjct: 85  TKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQ 140

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
            +  +   L  L  L  L + +  +    L+ + N+  L  L    N +S  I      +
Sbjct: 141 -ITNIS-PLAGLTNLQYLSIGNAQV--SDLTPLANLSKLTTLKADDNKIS-DISP-LASL 194

Query: 121 HGLSVIDISDNQL 133
             L  + + +NQ+
Sbjct: 195 PNLIEVHLKNNQI 207

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 70.9 bits (174), Expect = 6e-15
 Identities = 28/132 (21%), Positives = 60/132 (45%), Gaps = 10/132 (7%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           +L  L L+ NQ+T      + +  ++  L+LS N   N    ++  L  +  L L++ Q 
Sbjct: 64  NLIGLELKDNQITD--LAPLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQ- 118

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
           + ++   L  L  L  L L  N +    +S +  + +L+ L++ +  +S  +      + 
Sbjct: 119 ITDVT-PLAGLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVS-DLTP-LANLS 173

Query: 122 GLSVIDISDNQL 133
            L+ +   DN++
Sbjct: 174 KLTTLKADDNKI 185

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 69.3 bits (170), Expect = 2e-14
 Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 10/133 (7%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
           + +T L   G  +T      +     L  L+L  N+  +  P  L +L K+  L LS N 
Sbjct: 41  DGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP 96

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
                   +  L  +  LDL+   +    ++ +  + +L+ L L  N ++ +I     G+
Sbjct: 97  LKN--VSAIAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQIT-NISP-LAGL 150

Query: 121 HGLSVIDISDNQL 133
             L  + I + Q+
Sbjct: 151 TNLQYLSIGNAQV 163

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.0 bits (164), Expect = 1e-13
 Identities = 29/132 (21%), Positives = 58/132 (43%), Gaps = 10/132 (7%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           +  K+    + +T            +  L            + +  L  L  L L +NQ 
Sbjct: 20  NAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQ- 74

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
           + +L   L+ L +++EL+LS N L  + +S I  ++S++ L+L+   ++   P    G+ 
Sbjct: 75  ITDLA-PLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLS 129

Query: 122 GLSVIDISDNQL 133
            L V+ +  NQ+
Sbjct: 130 NLQVLYLDLNQI 141

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.4 bits (152), Expect = 6e-12
 Identities = 29/140 (20%), Positives = 59/140 (42%), Gaps = 8/140 (5%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
           ++L  L L  NQ+T    + +     L+YL +   + ++  P  L +L KL  L   +N+
Sbjct: 129 SNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
            + ++   L  L  L E+ L +N +    +S + N  +L  + L++  ++         +
Sbjct: 185 -ISDIS-PLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLTNQTITNQPVFYNNNL 240

Query: 121 HGLSVIDISDNQLQGPVPNS 140
              +V+         P   S
Sbjct: 241 VVPNVVKGPSGAPIAPATIS 260

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.4 bits (113), Expect = 9e-07
 Identities = 10/89 (11%), Positives = 32/89 (35%), Gaps = 6/89 (6%)

Query: 45  LGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNL 104
             +L     ++   +     +      L  ++ L      +    +  +  + +L  L L
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGV--TTIEGVQYLNNLIGLEL 70

Query: 105 SHNNLSGSIPNCFEGMHGLSVIDISDNQL 133
             N ++  +    + +  ++ +++S N L
Sbjct: 71  KDNQIT-DLAP-LKNLTKITELELSGNPL 97

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.9 bits (174), Expect = 9e-15
 Identities = 41/170 (24%), Positives = 62/170 (36%), Gaps = 31/170 (18%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           +   L L  NQ+           + LE L LS N        +   L  L+ L L +N+ 
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR- 123

Query: 62  VQELPKE-LEKLVQLSELDLSHNFL--------------------GGELLSQI-----CN 95
           +  +P      L +L EL L +N +                      + LS I       
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183

Query: 96  MESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRN 145
           + +L  LNL+  NL   IPN    +  L  +D+S N L    P   +F+ 
Sbjct: 184 LSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPG--SFQG 229

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.9 bits (174), Expect = 1e-14
 Identities = 31/140 (22%), Positives = 49/140 (35%), Gaps = 14/140 (10%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
           N  +K+I     L   +P  I        L+L  N+       S   L  L  L LS N 
Sbjct: 43  NQFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQI-----CNMESLEKLNLSHNNLSGSIPN 115
                      L  L+ L+L  N      L+ I       +  L++L L +N +      
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDN-----RLTTIPNGAFVYLSKLKELWLRNNPIESIPSY 154

Query: 116 CFEGMHGLSVIDISD-NQLQ 134
            F  +  L  +D+ +  +L 
Sbjct: 155 AFNRIPSLRRLDLGELKRLS 174

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 61.3 bits (149), Expect = 2e-11
 Identities = 38/181 (20%), Positives = 62/181 (34%), Gaps = 37/181 (20%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFK---ELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSN 58
           +L  L L    L      EI +     +L+ LDLS N  +   P S   L+ L  L +  
Sbjct: 186 NLRYLNLAMCNLR-----EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240

Query: 59  NQFVQELPKELEKLVQLSELDLSHN---FLGGELLSQICNMESLEKLNLSHNNL------ 109
           +Q         + L  L E++L+HN    L  +L +    +  LE+++L HN        
Sbjct: 241 SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT---PLHHLERIHLHHNPWNCNCDI 297

Query: 110 --------------SGSIPNCF--EGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEG 153
                         +     C     + G  + ++  N      P       A +   EG
Sbjct: 298 LWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVE-PPADLNVTEG 356

Query: 154 N 154
            
Sbjct: 357 M 357

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.5 bits (173), Expect = 9e-15
 Identities = 26/144 (18%), Positives = 54/144 (37%), Gaps = 10/144 (6%)

Query: 1   NSLTKLILRGNQLTGRLPTEI-GSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNN 59
             L  L +       ++  +       LE L++ A+   +  PKSL S+  + +L L   
Sbjct: 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208

Query: 60  QFVQELPKELEKLVQLSELDLSHNFLGGELLSQIC--------NMESLEKLNLSHNNLSG 111
           Q +  L   ++    +  L+L    L     S++            +   + ++  +L  
Sbjct: 209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF- 267

Query: 112 SIPNCFEGMHGLSVIDISDNQLQG 135
            +      + GL  ++ S NQL+ 
Sbjct: 268 QVMKLLNQISGLLELEFSRNQLKS 291

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 68.2 bits (167), Expect = 6e-14
 Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 28/160 (17%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           ++  L L  N++T    +++     L+ L L++N  N     S  SL  L +L LS N  
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY- 111

Query: 62  VQELPKEL-EKLVQLSELDLSHN---------------------FLGGELLSQIC----- 94
           +  L     + L  L+ L+L  N                         +  ++I      
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171

Query: 95  NMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQ 134
            +  LE+L +  ++L    P   + +  +S + +   Q  
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 61.7 bits (150), Expect = 1e-11
 Identities = 25/142 (17%), Positives = 50/142 (35%), Gaps = 11/142 (7%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
            L +L +  + L    P  + S + + +L L   +    +   +     +  L L +   
Sbjct: 175 FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234

Query: 62  ----VQELPK----ELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSI 113
                 EL       L K      + ++   L  +++  +  +  L +L  S N L  S+
Sbjct: 235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SV 292

Query: 114 P-NCFEGMHGLSVIDISDNQLQ 134
           P   F+ +  L  I +  N   
Sbjct: 293 PDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 54.4 bits (131), Expect = 4e-09
 Identities = 31/154 (20%), Positives = 56/154 (36%), Gaps = 31/154 (20%)

Query: 8   LRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPK 67
                L   +P+ +   + ++ LDLS NR        L   + L  L L++N  +  + +
Sbjct: 38  GSSGSLN-SIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEE 93

Query: 68  EL-EKLVQLSELDLSHN-------------------FLGGELLSQIC------NMESLEK 101
           +    L  L  LDLS+N                    L G     +       ++  L+ 
Sbjct: 94  DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153

Query: 102 LNLSHNNLSGSIP-NCFEGMHGLSVIDISDNQLQ 134
           L + + +    I    F G+  L  ++I  + LQ
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 65.4 bits (160), Expect = 4e-13
 Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 5/136 (3%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           S   L L  N L         SF EL+ LDLS          +  SL  L  L L+ N  
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP- 87

Query: 62  VQELPKEL-EKLVQLSELDLSHNFLGGELLSQI-CNMESLEKLNLSHNNL-SGSIPNCFE 118
           +Q L       L  L +L      L   L +    ++++L++LN++HN + S  +P  F 
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 119 GMHGLSVIDISDNQLQ 134
            +  L  +D+S N++Q
Sbjct: 147 NLTNLEHLDLSSNKIQ 162

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 8/136 (5%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNN-SVPKSLGSLLKLHYLSLSNNQ 60
           SL KL+     L       IG  K L+ L+++ N   +  +P+   +L  L +L LS+N+
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 61  FVQELPKE-LEKLVQL----SELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPN 115
             Q +    L  L Q+      LDLS N +   +         L++L L  N L      
Sbjct: 161 I-QSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDG 218

Query: 116 CFEGMHGLSVIDISDN 131
            F+ +  L  I +  N
Sbjct: 219 IFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.4 bits (142), Expect = 1e-10
 Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 16/124 (12%)

Query: 18  PTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKEL-EKLVQLS 76
           P  +      + LDLS N   +    S  S  +L  L LS  + +Q +     + L  LS
Sbjct: 23  PDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLS 79

Query: 77  ELDLSHNFLGGELLSQI-----CNMESLEKLNLSHNNLSGSIP-NCFEGMHGLSVIDISD 130
            L L+ N      +  +       + SL+KL     NL+ S+       +  L  ++++ 
Sbjct: 80  TLILTGN-----PIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAH 133

Query: 131 NQLQ 134
           N +Q
Sbjct: 134 NLIQ 137

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 65.1 bits (159), Expect = 5e-13
 Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 10/133 (7%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
           NS+ ++I   + +   +   I     +  L L+ N+  +  P  L +L  L +L L  N+
Sbjct: 46  NSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK 101

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
            V++L   L+ L +L  L L HN +    ++ + ++  LE L L +N ++  I      +
Sbjct: 102 -VKDL-SSLKDLKKLKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKIT-DITV-LSRL 155

Query: 121 HGLSVIDISDNQL 133
             L  + + DNQ+
Sbjct: 156 TKLDTLSLEDNQI 168

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.5 bits (155), Expect = 2e-12
 Identities = 34/139 (24%), Positives = 55/139 (39%), Gaps = 8/139 (5%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
            L  L L  N ++      +    +LE L L  N+  +     L  L KL  LSL +NQ 
Sbjct: 113 KLKSLSLEHNGIS--DINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQ- 167

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
           + ++   L  L +L  L LS N +    L  +  +++L+ L L          N    + 
Sbjct: 168 ISDIV-PLAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLV 224

Query: 122 GLSVIDISDNQLQGPVPNS 140
             + +  +D  L  P   S
Sbjct: 225 VPNTVKNTDGSLVTPEIIS 243

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.4 bits (152), Expect = 5e-12
 Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 10/132 (7%)

Query: 3   LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFV 62
             K  L+   +T            ++ +  + +   +   + +  L  +  L L+ N+ +
Sbjct: 26  TIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNK-L 80

Query: 63  QELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHG 122
            ++ K L  L  L  L L  N +  + LS + +++ L+ L+L HN +S  I      +  
Sbjct: 81  TDI-KPLANLKNLGWLFLDENKV--KDLSSLKDLKKLKSLSLEHNGIS-DING-LVHLPQ 135

Query: 123 LSVIDISDNQLQ 134
           L  + + +N++ 
Sbjct: 136 LESLYLGNNKIT 147

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 56.2 bits (136), Expect = 7e-10
 Identities = 19/130 (14%), Positives = 53/130 (40%), Gaps = 10/130 (7%)

Query: 4   TKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQ 63
           ++ I     +         +F E    +L      ++V      L  +  +  +N+  ++
Sbjct: 5   SETITVPTPIKQIFS--DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSD-IK 59

Query: 64  ELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGL 123
            + + ++ L  +++L L+ N L    +  + N+++L  L L  N +   + +  + +  L
Sbjct: 60  SV-QGIQYLPNVTKLFLNGNKL--TDIKPLANLKNLGWLFLDENKVK-DLSS-LKDLKKL 114

Query: 124 SVIDISDNQL 133
             + +  N +
Sbjct: 115 KSLSLEHNGI 124

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 6/109 (5%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
            L  L L  NQ++      +    +L+ L LS N  ++   ++L  L  L  L L + + 
Sbjct: 157 KLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQEC 212

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLS 110
           + +       LV  + +  +   L       I +    EK N+  +   
Sbjct: 213 LNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPE 259

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 65.4 bits (160), Expect = 7e-13
 Identities = 36/156 (23%), Positives = 53/156 (33%), Gaps = 22/156 (14%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSF----KELEYLDLSANRFNNSVPKSLGSLLK-----L 51
                + L    LT     +I S       L  L+L +N   +     +   L+     +
Sbjct: 28  QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKI 87

Query: 52  HYLSLSNNQF----VQELPKELEKLVQLSELDLSHNFLGGELLSQICNME-----SLEKL 102
             LSL N          L   L  L  L EL LS N LG   L  +C         LEKL
Sbjct: 88  QKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKL 147

Query: 103 NLSHNNLS----GSIPNCFEGMHGLSVIDISDNQLQ 134
            L + +LS      + +          + +S+N + 
Sbjct: 148 QLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 62.3 bits (152), Expect = 9e-12
 Identities = 31/155 (20%), Positives = 54/155 (34%), Gaps = 22/155 (14%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSF----KELEYLDLSANRFNNSVPKSLGSLLK-----LH 52
            L KL L    L+      + S      + + L +S N  N +  + L   LK     L 
Sbjct: 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE 202

Query: 53  YLSLSNNQF----VQELPKELEKLVQLSELDLSHNFLGGELLSQICNME-----SLEKLN 103
            L L +        ++L   +     L EL L  N LG   ++++C         L  L 
Sbjct: 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262

Query: 104 LSHNNLS----GSIPNCFEGMHGLSVIDISDNQLQ 134
           +    ++    G +         L  + ++ N+L 
Sbjct: 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 60.7 bits (148), Expect = 3e-11
 Identities = 24/124 (19%), Positives = 51/124 (41%), Gaps = 14/124 (11%)

Query: 25  KELEYLDLSANRFNNSVPKSLGSLLK-LHYLSLSNNQF----VQELPKELEKLVQLSELD 79
            +++ LD+     +++    L  LL+    + L +        +++   L     L+EL+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 80  LSHNFLGGELLSQICNM-----ESLEKLNLSHNNLS----GSIPNCFEGMHGLSVIDISD 130
           L  N LG   +  +          ++KL+L +  L+    G + +    +  L  + +SD
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 131 NQLQ 134
           N L 
Sbjct: 123 NLLG 126

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 59.6 bits (145), Expect = 6e-11
 Identities = 33/155 (21%), Positives = 51/155 (32%), Gaps = 22/155 (14%)

Query: 2   SLTKLILRGNQLTGR----LPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLK-----LH 52
            L  L L    +T      L   + S   L  L L +N+  +     L   L      L 
Sbjct: 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259

Query: 53  YLSLSNNQF----VQELPKELEKLVQLSELDLSHNFLGGELLSQICNM-----ESLEKLN 103
            L +           +L + L     L EL L+ N LG E    +C         LE L 
Sbjct: 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319

Query: 104 LSHNNLSG----SIPNCFEGMHGLSVIDISDNQLQ 134
           +   + +        +       L  + IS+N+L+
Sbjct: 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 31/127 (24%), Positives = 45/127 (35%), Gaps = 18/127 (14%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSF----KELEYLDLSANRFNNSVPKSLGSLLK-----LH 52
            L  L ++    T    +   S     + L  L +S NR  ++  + L   L      L 
Sbjct: 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLR 373

Query: 53  YLSLSNNQF----VQELPKELEKLVQLSELDLSHNFLGGELLSQIC-----NMESLEKLN 103
            L L++          L   L     L ELDLS+N LG   + Q+          LE+L 
Sbjct: 374 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV 433

Query: 104 LSHNNLS 110
           L     S
Sbjct: 434 LYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 51.1 bits (123), Expect = 6e-08
 Identities = 23/125 (18%), Positives = 53/125 (42%), Gaps = 14/125 (11%)

Query: 2   SLTKLILRGNQLTGRLPTEIGS-FKELEYLDLSANRFNNSVPKSLGSLLK----LHYLSL 56
            +  L ++  +L+     E+    ++ + + L       +  K + S L+    L  L+L
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 57  SNNQF----VQELPKELEKL-VQLSELDLSHNFLGGELLSQICNM----ESLEKLNLSHN 107
            +N+     V  + + L+    ++ +L L +  L G     + +      +L++L+LS N
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123

Query: 108 NLSGS 112
            L  +
Sbjct: 124 LLGDA 128

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 48.4 bits (116), Expect = 4e-07
 Identities = 31/160 (19%), Positives = 53/160 (33%), Gaps = 33/160 (20%)

Query: 2   SLTKLILRGNQLTGR-----LPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLK----LH 52
           SL +L L  N+L         P  +     L  L +            L  +L+    L 
Sbjct: 228 SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLK 287

Query: 53  YLSLSNNQF----VQELPKELEK-LVQLSELDLSHNFLGGELLSQICNM----ESLEKLN 103
            LSL+ N+      + L + L +   QL  L +          S   ++      L +L 
Sbjct: 288 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ 347

Query: 104 LSHNNLSGS----------IPNCFEGMHGLSVIDISDNQL 133
           +S+N L  +           P        L V+ ++D  +
Sbjct: 348 ISNNRLEDAGVRELCQGLGQPGS-----VLRVLWLADCDV 382

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 18/128 (14%)

Query: 1   NSLTKLILRGNQLTGRLPTEIG-----SFKELEYLDLSANRFNNSVPKSLGSLLK----L 51
            SL +L L GN+L       +         +LE L + +  F  +      S+L     L
Sbjct: 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343

Query: 52  HYLSLSNNQF----VQELPKELEK-LVQLSELDLSHNFLGGE----LLSQICNMESLEKL 102
             L +SNN+     V+EL + L +    L  L L+   +       L + +    SL +L
Sbjct: 344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL 403

Query: 103 NLSHNNLS 110
           +LS+N L 
Sbjct: 404 DLSNNCLG 411

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 63.9 bits (156), Expect = 7e-13
 Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 6/110 (5%)

Query: 28  EYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKEL-EKLVQLSELDLSHNFLG 86
             + L  N      P +     KL  + LSNNQ + EL  +  + L  L+ L L  N + 
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNKI- 92

Query: 87  GELLSQI-CNMESLEKLNLSHNNLSGSIPN-CFEGMHGLSVIDISDNQLQ 134
            EL   +   + SL+ L L+ N ++  +    F+ +H L+++ + DN+LQ
Sbjct: 93  TELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 63.9 bits (156), Expect = 7e-13
 Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 2/131 (1%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           ++T++ L  N +    P     +K+L  +DLS N+ +   P +   L  L+ L L  N+ 
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK- 91

Query: 62  VQELPKEL-EKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
           + ELPK L E L  L  L L+ N +    +    ++ +L  L+L  N L       F  +
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151

Query: 121 HGLSVIDISDN 131
             +  + ++ N
Sbjct: 152 RAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 8/111 (7%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSF---KELEYLDLSANRFNNSVPKSLGSLLKLHYLSLS 57
             L ++ L  NQ++  L     +F   + L  L L  N+           L  L  L L+
Sbjct: 56  KKLRRIDLSNNQIS-ELAP--DAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112

Query: 58  NNQFVQELPKEL-EKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHN 107
            N+ +  L  +  + L  L+ L L  N L          + +++ ++L+ N
Sbjct: 113 ANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 6/63 (9%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSF---KELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSN 58
           SL  L+L  N++   L     +F     L  L L  N+       +   L  +  + L+ 
Sbjct: 105 SLQLLLLNANKIN-CLRV--DAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161

Query: 59  NQF 61
           N F
Sbjct: 162 NPF 164

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 63.8 bits (156), Expect = 1e-12
 Identities = 41/134 (30%), Positives = 61/134 (45%), Gaps = 6/134 (4%)

Query: 1   NSLTKLILRGNQLTGRLPTEI-GSFKELEYLDLSANRFNNSVPKSL-GSLLKLHYLSLSN 58
            +L  L +  N+L   LP  +      L  L L  N+   S+P  +  SL KL YLSL  
Sbjct: 85  KNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGY 142

Query: 59  NQFVQELPKEL-EKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCF 117
           N+  Q LPK + +KL  L EL L +N L          +  L+ L L +N L       F
Sbjct: 143 NEL-QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF 201

Query: 118 EGMHGLSVIDISDN 131
           + +  L ++ + +N
Sbjct: 202 DSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 62.7 bits (153), Expect = 3e-12
 Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 24/145 (16%)

Query: 2   SLTKLILRGNQLTGRLPTEI-GSFKELEYLDLSANRFNNSVPKSL-GSLLKLHYLSLSNN 59
            L  L L  N+L   LP  I    K LE L ++ N+   ++P  +   L+ L  L L  N
Sbjct: 62  KLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRN 119

Query: 60  QFVQELPKEL-EKLVQLSELDLSHNFLGGELLSQICNME--------SLEKLNLSHNNLS 110
           Q  + LP  + + L +L+ L L +N        ++ ++         SL++L L +N L 
Sbjct: 120 QL-KSLPPRVFDSLTKLTYLSLGYN--------ELQSLPKGVFDKLTSLKELRLYNNQLK 170

Query: 111 GSIP-NCFEGMHGLSVIDISDNQLQ 134
             +P   F+ +  L  + + +NQL+
Sbjct: 171 -RVPEGAFDKLTELKTLKLDNNQLK 194

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.8 bits (130), Expect = 4e-09
 Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 9/137 (6%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
           N+   +     +LT  +P+ I    + + LDL +N+ ++   K+   L KL  L L++N+
Sbjct: 16  NNKNSVDCSSKKLT-AIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK 72

Query: 61  FVQELPKEL-EKLVQLSELDLSHNFLGGELLSQI-CNMESLEKLNLSHNNLSGSIP-NCF 117
             Q LP  + ++L  L  L ++ N L   L   +   + +L +L L  N L  S+P   F
Sbjct: 73  L-QTLPAGIFKELKNLETLWVTDNKL-QALPIGVFDQLVNLAELRLDRNQLK-SLPPRVF 129

Query: 118 EGMHGLSVIDISDNQLQ 134
           + +  L+ + +  N+LQ
Sbjct: 130 DSLTKLTYLSLGYNELQ 146

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 64.0 bits (155), Expect = 2e-12
 Identities = 24/106 (22%), Positives = 35/106 (33%), Gaps = 12/106 (11%)

Query: 35  NRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKE-LEKLVQLSELDLSHNFLGGELLSQI 93
                     L     L  L + N Q +Q L    L  L +L  L +  +      L  +
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-----GLRFV 71

Query: 94  -----CNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQ 134
                     L +LNLS N L        +G+  L  + +S N L 
Sbjct: 72  APDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.8 bits (126), Expect = 1e-08
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 9/100 (9%)

Query: 64  ELPKELEKLVQLSELDLSHNFLGGELLSQI-----CNMESLEKLNLSHNNLSGSIPNCFE 118
           +    L     L+EL + +     + L  +       +  L  L +  + L    P+ F 
Sbjct: 22  DSLHHLPGAENLTELYIENQ----QHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH 77

Query: 119 GMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELC 158
               LS +++S N L+     +    +     L GN   C
Sbjct: 78  FTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.7 bits (118), Expect = 1e-07
 Identities = 25/123 (20%), Positives = 41/123 (33%), Gaps = 11/123 (8%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFK---ELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSN 58
           +LT+L +   Q    L       +   EL  L +  +      P +     +L  L+LS 
Sbjct: 32  NLTELYIENQQHLQHLEL--RDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89

Query: 59  NQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFE 118
           N   + L  +  + + L EL LS N      L   C +  L++                 
Sbjct: 90  NAL-ESLSWKTVQGLSLQELVLSGNP-----LHCSCALRWLQRWEEEGLGGVPEQKLQCH 143

Query: 119 GMH 121
           G  
Sbjct: 144 GQG 146

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.6 bits (115), Expect = 4e-07
 Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 2/93 (2%)

Query: 18  PTEIGSFKELEYLDLSANRFNNSVPK-SLGSLLKLHYLSLSNNQFVQELPKELEKLVQLS 76
              +   + L  L +   +    +    L  L +L  L++  +      P       +LS
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83

Query: 77  ELDLSHNFLGGELLSQICNMESLEKLNLSHNNL 109
            L+LS N L   L  +     SL++L LS N L
Sbjct: 84  RLNLSFNAL-ESLSWKTVQGLSLQELVLSGNPL 115

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 63.1 bits (154), Expect = 2e-12
 Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 11/133 (8%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
            +L +L L  NQ++    + +    +LE L ++ NR  N    +      L  L L NN+
Sbjct: 63  TNLKELHLSHNQISD--LSPLKDLTKLEELSVNRNRLKNL---NGIPSACLSRLFLDNNE 117

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
                   L  L  L  L + +N L  + +  +  +  LE L+L  N ++ +       +
Sbjct: 118 LRD--TDSLIHLKNLEILSIRNNKL--KSIVMLGFLSKLEVLDLHGNEIT-NTGG-LTRL 171

Query: 121 HGLSVIDISDNQL 133
             ++ ID++  + 
Sbjct: 172 KKVNWIDLTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 61.6 bits (150), Expect = 8e-12
 Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 11/133 (8%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
            +       + +       +  F  L+ L LS N+ ++     L  L KL  LS++ N+ 
Sbjct: 42  GVQNFNGDNSNIQS--LAGMQFFTNLKELHLSHNQISD--LSPLKDLTKLEELSVNRNR- 96

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
           ++ L         LS L L +N L       + ++++LE L++ +N L  SI      + 
Sbjct: 97  LKNL--NGIPSACLSRLFLDNNEL--RDTDSLIHLKNLEILSIRNNKLK-SIVM-LGFLS 150

Query: 122 GLSVIDISDNQLQ 134
            L V+D+  N++ 
Sbjct: 151 KLEVLDLHGNEIT 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 56.2 bits (136), Expect = 6e-10
 Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 11/130 (8%)

Query: 5   KLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQE 64
           + I R   +    P            +L      + V      L  +   +  N+     
Sbjct: 1   ESIQRPTPINQVFP--DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQS- 55

Query: 65  LPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLS 124
               ++    L EL LSHN +    LS + ++  LE+L+++ N L  ++         LS
Sbjct: 56  -LAGMQFFTNLKELHLSHNQI--SDLSPLKDLTKLEELSVNRNRLK-NLNGI--PSACLS 109

Query: 125 VIDISDNQLQ 134
            + + +N+L+
Sbjct: 110 RLFLDNNELR 119

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.2 bits (97), Expect = 8e-05
 Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 10/111 (9%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           +L  L +R N+L       +G   +LE LDL  N   N     L  L K++++ L+  + 
Sbjct: 129 NLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLTGQKC 184

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLS--QICNMESLEKLNLSHNNLS 110
           V E  K   +L   + +        G  +S   I N  S     +      
Sbjct: 185 VNEPVKYQPELYITNTV----KDPDGRWISPYYISNGGSYVDGCVLWELPV 231

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 64.1 bits (156), Expect = 2e-12
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 8/111 (7%)

Query: 27  LEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKEL-EKLVQLSELDLSHNFL 85
            + L LS N  +      +  L +L  L LS+N+  + L   +      L  LD+SHN L
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRI-RSLDFHVFLFNQDLEYLDVSHNRL 112

Query: 86  GGELLSQICNMESLEKLNLSHNNLSGSIPNC--FEGMHGLSVIDISDNQLQ 134
              +      M SL  L+LS N+    +P C  F  +  L+ + +S  + +
Sbjct: 113 -QNISCC--PMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFR 159

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 64.1 bits (156), Expect = 2e-12
 Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 8/137 (5%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           S T L    N  T  +     + K L+ L L  N    +  K       +  L   +   
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSL 412

Query: 62  VQELPKELEKLVQ----LSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCF 117
                   ++       +  L+LS N L G +   +     ++ L+L +N +  SIP   
Sbjct: 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDV 469

Query: 118 EGMHGLSVIDISDNQLQ 134
             +  L  ++++ NQL+
Sbjct: 470 THLQALQELNVASNQLK 486

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 60.7 bits (147), Expect = 4e-11
 Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 7/111 (6%)

Query: 2   SLTKLILRGNQLT----GRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLS 57
           +++ L      L               + +  L+LS+N    SV + L    K+  L L 
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLH 458

Query: 58  NNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNN 108
           NN+    +PK++  L  L EL+++ N L          + SL+ + L  N 
Sbjct: 459 NNRI-MSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 56.4 bits (136), Expect = 9e-10
 Identities = 32/140 (22%), Positives = 48/140 (34%), Gaps = 13/140 (9%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
               L L  N ++     +I    EL  L LS NR  +           L YL +S+N+ 
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112

Query: 62  VQELPKELEKLVQLSELDLSHNFL-----GGELLSQICNMESLEKLNLSHNNLSGSIPNC 116
            Q +      +  L  LDLS N         E      N+  L  L LS           
Sbjct: 113 -QNIS--CCPMASLRHLDLSFNDFDVLPVCKEFG----NLTKLTFLGLSAAKFRQLDLLP 165

Query: 117 FEGMHGLSV-IDISDNQLQG 135
              +H   + +D+    ++G
Sbjct: 166 VAHLHLSCILLDLVSYHIKG 185

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 55.6 bits (134), Expect = 2e-09
 Identities = 22/141 (15%), Positives = 51/141 (36%), Gaps = 8/141 (5%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSF---KELEYLDLSANRFNNSVPK-----SLGSLLKLHY 53
           +L  + L+  + T +   ++  F   + +EYL++        + +     S  +L  L  
Sbjct: 250 TLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMI 309

Query: 54  LSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSI 113
             + N  F+           +++   LS +      +    +  S   LN + N  + S+
Sbjct: 310 EHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSV 369

Query: 114 PNCFEGMHGLSVIDISDNQLQ 134
                 +  L  + +  N L+
Sbjct: 370 FQGCSTLKRLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 54.9 bits (132), Expect = 3e-09
 Identities = 32/143 (22%), Positives = 52/143 (36%), Gaps = 3/143 (2%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
            SL    ++              F E+    LS +           S     +L+ + N 
Sbjct: 305 KSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV 364

Query: 61  FVQELPKELEKLVQLSELDLSHNFLG--GELLSQICNMESLEKLNLSHNNL-SGSIPNCF 117
           F   + +    L +L  L L  N L    ++     NM SLE L++S N+L S +     
Sbjct: 365 FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424

Query: 118 EGMHGLSVIDISDNQLQGPVPNS 140
                + V+++S N L G V   
Sbjct: 425 AWAESILVLNLSSNMLTGSVFRC 447

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.1 bits (117), Expect = 3e-07
 Identities = 36/118 (30%), Positives = 50/118 (42%), Gaps = 9/118 (7%)

Query: 29  YLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGE 88
            +D S       VPK L    K   LSLS N   +    ++  L +L  L LSHN +   
Sbjct: 35  MVDYSNRNLT-HVPKDLPPRTK--ALSLSQNSISELRMPDISFLSELRVLRLSHNRI-RS 90

Query: 89  LLSQIC-NMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRN 145
           L   +    + LE L++SHN L  +I      M  L  +D+S N     +P    F N
Sbjct: 91  LDFHVFLFNQDLEYLDVSHNRLQ-NIS--CCPMASLRHLDLSFNDFDV-LPVCKEFGN 144

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPK-SLGSLLKLHYLSLSNNQ 60
            +  L L  N++   +P ++   + L+ L++++N+   SVP      L  L Y+ L +N 
Sbjct: 451 KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL-KSVPDGVFDRLTSLQYIWLHDNP 508

Query: 61  F 61
           +
Sbjct: 509 W 509

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 62.7 bits (151), Expect = 7e-12
 Identities = 25/128 (19%), Positives = 47/128 (36%), Gaps = 18/128 (14%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGS--FKELEYLDLSANRFN---NSVPKSLGSLL------ 49
            +L  L +    L   +  +I       LE L L     +   +        L       
Sbjct: 193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFP 252

Query: 50  KLHYLSLSNNQFVQELPKEL---EKLVQLSELDLSHNFLGGE----LLSQICNMESLEKL 102
            L +L + + +    + +     + L QL  +D+S   L  E    LL  +  ++ L+ +
Sbjct: 253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFI 312

Query: 103 NLSHNNLS 110
           N+ +N LS
Sbjct: 313 NMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 52.3 bits (124), Expect = 2e-08
 Identities = 14/82 (17%), Positives = 33/82 (40%), Gaps = 7/82 (8%)

Query: 22  GSFKELEYLDLSANRFNNSVPKSLGS---LLKLHYLSLSNNQF----VQELPKELEKLVQ 74
             F  L++L +      N V +       L +L  + +S         + L   ++K+  
Sbjct: 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH 308

Query: 75  LSELDLSHNFLGGELLSQICNM 96
           L  +++ +N+L  E+  ++   
Sbjct: 309 LKFINMKYNYLSDEMKKELQKS 330

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 62.4 bits (152), Expect = 7e-12
 Identities = 29/133 (21%), Positives = 47/133 (35%), Gaps = 14/133 (10%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
             LT L    N LT     ++    +L  LD   N         +    +L  L  S N+
Sbjct: 127 PLLTYLNCARNTLT---EIDVSHNTQLTELDCHLN--KKITKLDVTPQTQLTTLDCSFNK 181

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
             +    ++ +   L+ L+   N +    L  +     L  L+ S N L+  I      +
Sbjct: 182 ITEL---DVSQNKLLNRLNCDTNNI--TKLD-LNQNIQLTFLDCSSNKLT-EID--VTPL 232

Query: 121 HGLSVIDISDNQL 133
             L+  D S N L
Sbjct: 233 TQLTYFDCSVNPL 245

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.5 bits (147), Expect = 3e-11
 Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 14/133 (10%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
            LT L    N+LT     ++     L YL+ + N         +    +L  L    N+ 
Sbjct: 107 KLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLTE---IDVSHNTQLTELDCHLNKK 160

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
           + +L   +    QL+ LD S N +    +S     + L +LN   NN++  +        
Sbjct: 161 ITKLD--VTPQTQLTTLDCSFNKITELDVS---QNKLLNRLNCDTNNIT-KLD--LNQNI 212

Query: 122 GLSVIDISDNQLQ 134
            L+ +D S N+L 
Sbjct: 213 QLTFLDCSSNKLT 225

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 59.3 bits (144), Expect = 8e-11
 Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 14/132 (10%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           +LT L    N+LT  L   +    +L YL+   N+        +     L YL+ + N  
Sbjct: 86  NLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLTKL---DVSQNPLLTYLNCARNTL 139

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
             E+   +    QL+ELD   N    +L   +     L  L+ S N ++  +        
Sbjct: 140 -TEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT-ELD--VSQNK 191

Query: 122 GLSVIDISDNQL 133
            L+ ++   N +
Sbjct: 192 LLNRLNCDTNNI 203

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 29/133 (21%), Positives = 47/133 (35%), Gaps = 14/133 (10%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
            +LT L    + +T    T I     L  L  ++N         L     L YL+  +N+
Sbjct: 42  ATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNITT---LDLSQNTNLTYLACDSNK 96

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
               L   +  L +L+ L+   N L       +     L  LN + N L+  I       
Sbjct: 97  L-TNLD--VTPLTKLTYLNCDTNKLTK---LDVSQNPLLTYLNCARNTLT-EID--VSHN 147

Query: 121 HGLSVIDISDNQL 133
             L+ +D   N+ 
Sbjct: 148 TQLTELDCHLNKK 160

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.2 bits (141), Expect = 2e-10
 Identities = 27/151 (17%), Positives = 48/151 (31%), Gaps = 29/151 (19%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRF------------------NNSVPK 43
            LT L    N+LT  +   +    +L Y D S N                     + +  
Sbjct: 213 QLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEI 269

Query: 44  SLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLN 103
            L    +L Y      + ++EL  ++    QL  LD     +    L  +     L  L 
Sbjct: 270 DLTHNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAAGI--TELD-LSQNPKLVYLY 324

Query: 104 LSHNNLSGSIPNCFEGMHGLSVIDISDNQLQ 134
           L++  L+  +         L  +   +  +Q
Sbjct: 325 LNNTELT-ELD--VSHNTKLKSLSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 20/136 (14%), Positives = 46/136 (33%), Gaps = 17/136 (12%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
           + LT L      L      ++    +L Y      R    +   +    +L+ L      
Sbjct: 254 SKLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAG 308

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQI--CNMESLEKLNLSHNNLSGSIPNCFE 118
              EL   L +  +L  L L++       L+++   +   L+ L+  + ++     +   
Sbjct: 309 I-TELD--LSQNPKLVYLYLNNT-----ELTELDVSHNTKLKSLSCVNAHIQ-DFSS-VG 358

Query: 119 GMHGLSVIDISDNQLQ 134
            +  L+    ++ Q  
Sbjct: 359 KIPALNNNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.8 bits (122), Expect = 7e-08
 Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 8/107 (7%)

Query: 27  LEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLG 86
                 +A     +   S   L  L  L   N+    ++   +EKL  L++L  + N + 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSI-TDMT-GIEKLTGLTKLICTSNNI- 76

Query: 87  GELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQL 133
             L   +    +L  L    N L+ ++      +  L+ ++   N+L
Sbjct: 77  TTL--DLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKL 118

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 24/120 (20%), Positives = 40/120 (33%), Gaps = 14/120 (11%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
            L  L L   +LT  L   +    +L+ L        +    S+G +  L+    +  Q 
Sbjct: 319 KLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQDF--SSVGKIPALNNNFEAEGQT 373

Query: 62  VQELPKE------LEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPN 115
           +  +PKE      L   V    LD   N +   +      +       ++  NLS   P 
Sbjct: 374 I-TMPKETLTNNSLTIAVSPDLLDQFGNPM--NIEPGDGGVYDQATNTITWENLSTDNPA 430

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 60.8 bits (148), Expect = 8e-12
 Identities = 27/143 (18%), Positives = 62/143 (43%), Gaps = 19/143 (13%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFK---ELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSN 58
              +L L  N+ T    T  G FK   +L  ++ S N+  +    +      ++ + L++
Sbjct: 33  YTAELRLNNNEFTVLEAT--GIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90

Query: 59  NQFVQELPKEL-EKLVQLSELDLSHNFLGGELLSQI-----CNMESLEKLNLSHNNLSGS 112
           N+ ++ +  ++ + L  L  L L  N      ++ +       + S+  L+L  N ++ +
Sbjct: 91  NR-LENVQHKMFKGLESLKTLMLRSN-----RITCVGNDSFIGLSSVRLLSLYDNQIT-T 143

Query: 113 IPN-CFEGMHGLSVIDISDNQLQ 134
           +    F+ +H LS +++  N   
Sbjct: 144 VAPGAFDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.8 bits (135), Expect = 7e-10
 Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 8/111 (7%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSF---KELEYLDLSANRFNNSVPKSLGSLLKLHYLSLS 57
             L K+    N++T  +    G+F     +  + L++NR  N   K    L  L  L L 
Sbjct: 57  PQLRKINFSNNKIT-DIEE--GAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113

Query: 58  NNQFVQELPKEL-EKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHN 107
           +N+ +  +  +    L  +  L L  N +          + SL  LNL  N
Sbjct: 114 SNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.4 bits (149), Expect = 2e-11
 Identities = 32/138 (23%), Positives = 59/138 (42%), Gaps = 7/138 (5%)

Query: 2   SLTKL-ILRGNQLTGRLPTEI-GSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNN 59
            L ++ I + N L   +  E   +   L+YL +S     +         L+   L + +N
Sbjct: 80  KLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN 138

Query: 60  QFVQELPKE-LEKL-VQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIP-NC 116
             +  + +     L  +   L L+ N +  E+ +   N   L++LNLS NN    +P + 
Sbjct: 139 INIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDV 197

Query: 117 FEGMHGLSVIDISDNQLQ 134
           F G  G  ++DIS  ++ 
Sbjct: 198 FHGASGPVILDISRTRIH 215

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 60.2 bits (146), Expect = 4e-11
 Identities = 19/133 (14%), Positives = 52/133 (39%), Gaps = 7/133 (5%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           S    + + +++T  +P+++   +    L     +       +      L  + +S N  
Sbjct: 10  SNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66

Query: 62  VQELPKE-LEKLVQLSELDLSHNFLGGELLSQIC-NMESLEKLNLSHNNLSGSIPN-CFE 118
           ++ +  +    L +L E+ +        +  +   N+ +L+ L +S+  +   +P+    
Sbjct: 67  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKI 125

Query: 119 GMHGLSVIDISDN 131
                 ++DI DN
Sbjct: 126 HSLQKVLLDIQDN 138

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.1 bits (130), Expect = 4e-09
 Identities = 23/138 (16%), Positives = 46/138 (33%), Gaps = 12/138 (8%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSL--GSLLKLHYLSLSNN 59
           +L  L++    +            +   LD+  N   +++ ++   G   +   L L+ N
Sbjct: 105 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164

Query: 60  QFVQELPKELEKLVQLSELDLSHNFLGGELLSQIC-----NMESLEKLNLSHNNLSGSIP 114
              QE+        QL EL+LS N      L ++             L++S   +     
Sbjct: 165 GI-QEIHNSAFNGTQLDELNLSDN----NNLEELPNDVFHGASGPVILDISRTRIHSLPS 219

Query: 115 NCFEGMHGLSVIDISDNQ 132
              E +  L      + +
Sbjct: 220 YGLENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 27/119 (22%), Positives = 42/119 (35%), Gaps = 13/119 (10%)

Query: 1   NSLTKLILRGNQLTGRLPTEI-GSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNN 59
                 +   N L   LP ++         LD+S  R ++     L +L KL   S  N 
Sbjct: 178 QLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 236

Query: 60  QFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFE 118
           +   +LP  LEKLV L E  L++        S  C   +  +     + +        E
Sbjct: 237 K---KLP-TLEKLVALMEASLTYP-------SHCCAFANWRRQISELHPICNKSILRQE 284

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.4 bits (105), Expect = 8e-06
 Identities = 16/109 (14%), Positives = 31/109 (28%), Gaps = 8/109 (7%)

Query: 1   NSLTKLILRGNQLTGRLPTEI-GSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNN 59
                L L  N +   +        +  E      N                  L +S  
Sbjct: 154 FESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT 212

Query: 60  QFVQELPKE-LEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHN 107
           +    LP   LE L +L      +     + L  +  + +L + +L++ 
Sbjct: 213 RI-HSLPSYGLENLKKLRARSTYNL----KKLPTLEKLVALMEASLTYP 256

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 58.5 bits (142), Expect = 4e-11
 Identities = 29/144 (20%), Positives = 56/144 (38%), Gaps = 7/144 (4%)

Query: 3   LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFV 62
             +L      +  ++   + + K  ++L LS N        SL  +  L  LSL  N   
Sbjct: 27  KVELHGMIPPIE-KMDATLSTLKACKHLALSTNNI--EKISSLSGMENLRILSLGRNLI- 82

Query: 63  QELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSG-SIPNCFEGMH 121
           +++         L EL +S+N +    LS I  + +L  L +S+N ++     +    + 
Sbjct: 83  KKIENLDAVADTLEELWISYNQI--ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALD 140

Query: 122 GLSVIDISDNQLQGPVPNSTAFRN 145
            L  + ++ N L      + A   
Sbjct: 141 KLEDLLLAGNPLYNDYKENNATSE 164

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 14/111 (12%)

Query: 2   SLTKLILRGNQLTGRLPTEI---GSFKELEYLDLSANRFNNSVPKSLGSLL-KLHYLSLS 57
           +   L L  N +      +I      + L  L L  N       ++L ++   L  L +S
Sbjct: 49  ACKHLALSTNNIE-----KISSLSGMENLRILSLGRNLI--KKIENLDAVADTLEELWIS 101

Query: 58  NNQFVQELPKELEKLVQLSELDLSHNFLGG-ELLSQICNMESLEKLNLSHN 107
            NQ +  L   +EKLV L  L +S+N +     + ++  ++ LE L L+ N
Sbjct: 102 YNQ-IASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 59.7 bits (145), Expect = 5e-11
 Identities = 27/168 (16%), Positives = 51/168 (30%), Gaps = 35/168 (20%)

Query: 2   SLTKLILRGNQLTGR----LPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLK----LHY 53
           S+    L+ + +T      +   +     ++ + LS N       + L   +     L  
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 54  LSLSNNQF----------VQELPKELEKLVQLSELDLSHNFLGGELLSQIC----NMESL 99
              S+             ++ L + L K  +L  + LS N  G      +         L
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 100 EKLNLSHNNLS-------------GSIPNCFEGMHGLSVIDISDNQLQ 134
           E L L +N L               ++    +    L  I    N+L+
Sbjct: 125 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 57.0 bits (138), Expect = 4e-10
 Identities = 42/192 (21%), Positives = 70/192 (36%), Gaps = 40/192 (20%)

Query: 1   NSLTKLILRGNQLTGR----LPTEIGSFKELEYLDLSAN---RFNNSVPKSLGSLLK--- 50
           +S+ +++L GN +       L   I S K+LE  + S     R  + +P++L  LL+   
Sbjct: 32  DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL 91

Query: 51  ----LHYLSLSNNQF----VQELPKELEKLVQLSELDLSHNFLGGE-------------L 89
               LH + LS+N F     + L   L K   L  L L +N LG +             +
Sbjct: 92  KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAV 151

Query: 90  LSQICNMESLEKLNLSHNNLSG----SIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRN 145
             +  N   L  +    N L           F+    L  + +  N +           +
Sbjct: 152 NKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGI-----RPEGIEH 206

Query: 146 APVEALEGNKEL 157
             +E L   +EL
Sbjct: 207 LLLEGLAYCQEL 218

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 28/129 (21%), Positives = 45/129 (34%), Gaps = 20/129 (15%)

Query: 2   SLTKLILRGNQLTGR-----LPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLK----LH 52
            L  + +  N +        L   +   +EL+ LDL  N F +    +L   LK    L 
Sbjct: 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 247

Query: 53  YLSLSNNQF----VQELPKELEKLV--QLSELDLSHNFLGGELLSQIC-----NMESLEK 101
            L L++          +     KL    L  L L +N +  + +  +       M  L  
Sbjct: 248 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 307

Query: 102 LNLSHNNLS 110
           L L+ N  S
Sbjct: 308 LELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.9 bits (122), Expect = 6e-08
 Identities = 30/164 (18%), Positives = 51/164 (31%), Gaps = 32/164 (19%)

Query: 2   SLTKLILRGNQLT-------------GRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSL 48
            L  L L  N L                +  +  +   L  +    NR  N   K     
Sbjct: 123 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182

Query: 49  LK----LHYLSLSNNQF-----VQELPKELEKLVQLSELDLSHNFLGGELLSQICNM--- 96
            +    LH + +  N          L + L    +L  LDL  N       S +      
Sbjct: 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242

Query: 97  -ESLEKLNLSHNNLSG----SIPNCFEGMH--GLSVIDISDNQL 133
             +L +L L+   LS     ++ + F  +   GL  + +  N++
Sbjct: 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.2 bits (136), Expect = 6e-10
 Identities = 25/142 (17%), Positives = 55/142 (38%), Gaps = 13/142 (9%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFK---ELEYLDLSANRFNNSVP--KSLGSLLKLHYLSL 56
            +T + +R  +    +     + K    L++L +         P    + S      L +
Sbjct: 81  KVTHIEIRNTRNLTYIDP--DALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEI 137

Query: 57  SNNQFVQELPKE-LEKLV-QLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIP 114
           ++N ++  +P    + L  +   L L +N     +     N   L+ + L+ N     I 
Sbjct: 138 TDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVID 196

Query: 115 -NCFEGMH-GLSVIDISDNQLQ 134
            + F G++ G S++D+S   + 
Sbjct: 197 KDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 22/153 (14%), Positives = 56/153 (36%), Gaps = 18/153 (11%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
           +      +    +  R+P+   S    + L L           +  +L  +  + +S + 
Sbjct: 11  HQEEDFRVTCKDIQ-RIPSLPPS---TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66

Query: 61  FVQELPKEL-EKLVQLSELDLSHNFLGGELLSQI-----CNMESLEKLNLSHNNLSGSIP 114
            +Q+L       L +++ +++ +       L+ I       +  L+ L + +  L    P
Sbjct: 67  TLQQLESHSFYNLSKVTHIEIRNT----RNLTYIDPDALKELPLLKFLGIFNTGLK-MFP 121

Query: 115 NC--FEGMHGLSVIDISDNQLQGPVPNSTAFRN 145
           +           +++I+DN     +P + AF+ 
Sbjct: 122 DLTKVYSTDIFFILEITDNPYMTSIPVN-AFQG 153

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 9/91 (9%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSF----KELEYLDLSANRFNNSVPKSLGSLLKLHYLSL 56
           +    L +  N     +P    +F     E   L L  N F  SV     +  KL  + L
Sbjct: 130 DIFFILEITDNPYMTSIPV--NAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYL 186

Query: 57  SNNQFVQELPKE-LEKLVQ-LSELDLSHNFL 85
           + N+++  + K+    +    S LD+S   +
Sbjct: 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 55.9 bits (135), Expect = 8e-10
 Identities = 44/152 (28%), Positives = 65/152 (42%), Gaps = 22/152 (14%)

Query: 4   TKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQ 63
            KL L+   L            +L +L+L  N+           L +L  L L+NNQ   
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-A 96

Query: 64  ELPKEL-EKLVQLSELDLSHNFLGGELLSQICNMES--------LEKLNLSHNNLSGSIP 114
            LP  + + L QL +L L  N        Q+ ++ S        L++L L+ N L  SIP
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGN--------QLKSLPSGVFDRLTKLKELRLNTNQLQ-SIP 147

Query: 115 N-CFEGMHGLSVIDISDNQLQGPVPNSTAFRN 145
              F+ +  L  + +S NQLQ  VP+  AF  
Sbjct: 148 AGAFDKLTNLQTLSLSTNQLQS-VPHG-AFDR 177

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 45/146 (30%), Positives = 66/146 (45%), Gaps = 28/146 (19%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSF---KELEYLDLSANRFNNSVPKSL-GSLLKLHYLSL 56
             LT L L  NQL   L    G F    EL  L L+ N+   S+P  +   L +L  L L
Sbjct: 59  TKLTWLNLDYNQLQT-LSA--GVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYL 114

Query: 57  SNNQFVQELPKEL-EKLVQLSELDLSHNFLGGELLSQIC--------NMESLEKLNLSHN 107
             NQ ++ LP  + ++L +L EL L+ N        Q+          + +L+ L+LS N
Sbjct: 115 GGNQ-LKSLPSGVFDRLTKLKELRLNTN--------QLQSIPAGAFDKLTNLQTLSLSTN 165

Query: 108 NLSGSIP-NCFEGMHGLSVIDISDNQ 132
            L  S+P   F+ +  L  I +  NQ
Sbjct: 166 QLQ-SVPHGAFDRLGKLQTITLFGNQ 190

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 56.3 bits (136), Expect = 1e-09
 Identities = 31/156 (19%), Positives = 57/156 (36%), Gaps = 24/156 (15%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSF-----KELEYLDLSANRFNNSVPKSLGSLLK-----L 51
           ++T L L  N  + +  +E           +  L+L  N         L  +L      +
Sbjct: 110 TITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV 169

Query: 52  HYLSLSNNQF----VQELPKELEKL-VQLSELDLSHNFLGGELLSQIC-----NMESLEK 101
           + L+L  N        EL K L  +   ++ LDLS N LG +  +++          +  
Sbjct: 170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS 229

Query: 102 LNLSHNNLSGS----IPNCFEGMHGLSVIDISDNQL 133
           LNL  N L G     +    + +  L  + +  + +
Sbjct: 230 LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV 265

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 53.6 bits (129), Expect = 7e-09
 Identities = 35/157 (22%), Positives = 59/157 (37%), Gaps = 25/157 (15%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSF-----KELEYLDLSANRFNNSVPKSLGSLLK-----L 51
           S+T L L GN L  +   E+          +  L+LS N  +      L   L      +
Sbjct: 52  SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTI 111

Query: 52  HYLSLSNNQF----VQELPKELEKL-VQLSELDLSHNFLGGELLSQICNM-----ESLEK 101
             L L  N F      E  +    L   ++ L+L  N LG +   ++  +      ++  
Sbjct: 112 TVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171

Query: 102 LNLSHNNLS----GSIPNCFEGMH-GLSVIDISDNQL 133
           LNL  NNL+      +      +   ++ +D+S N L
Sbjct: 172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL 208

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 51.2 bits (123), Expect = 5e-08
 Identities = 28/129 (21%), Positives = 49/129 (37%), Gaps = 20/129 (15%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSF-----KELEYLDLSANRFNNSVPKSLGSLLK-----L 51
           ++T L L GN L+ +   E+          +  LDL  N F++                +
Sbjct: 81  NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASI 140

Query: 52  HYLSLSNNQF----VQELPKELEKL-VQLSELDLSHNFLGGELLSQICNM-----ESLEK 101
             L+L  N        EL + L  +   ++ L+L  N L  +  +++         S+  
Sbjct: 141 TSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTS 200

Query: 102 LNLSHNNLS 110
           L+LS N L 
Sbjct: 201 LDLSANLLG 209

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 50.5 bits (121), Expect = 8e-08
 Identities = 33/163 (20%), Positives = 53/163 (32%), Gaps = 35/163 (21%)

Query: 2   SLTKLILRGNQLTGRLPTEIGS-----FKELEYLDLSANRFNNSVPKSLGSLLK-----L 51
            +T L L  N L      E+          +  L+LS N         L  +L      +
Sbjct: 23  GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82

Query: 52  HYLSLSNNQF----VQELPKELEKL-VQLSELDLSHNFLGGELLSQICNM-----ESLEK 101
             L+LS N        EL K L  +   ++ LDL  N    +  S+          S+  
Sbjct: 83  TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS 142

Query: 102 LNLSHNNLSG----------SIPNCFEGMHGLSVIDISDNQLQ 134
           LNL  N+L            +          ++ +++  N L 
Sbjct: 143 LNLRGNDLGIKSSDELIQILAAIPA-----NVNSLNLRGNNLA 180

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 20/130 (15%), Positives = 41/130 (31%), Gaps = 21/130 (16%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSF-----KELEYLDLSANRFNNSVPKSLGSLLK----LH 52
           S+T L L  N L  +   E+          +  L+L  N  +    ++L  L      L 
Sbjct: 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256

Query: 53  YLSLSNNQF-------VQELPKELEKLVQLSELDLSHNFLGGELLSQICNM-----ESLE 100
            + L  +          + L      + ++  +D +   +       I N+        +
Sbjct: 257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKAD 316

Query: 101 KLNLSHNNLS 110
             +L +  L 
Sbjct: 317 VPSLLNQCLI 326

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 29/116 (25%)

Query: 43  KSLGSLLK----LHYLSLSNNQF----VQELPKELEKLV-QLSELDLSHNFLGGELLSQI 93
             +         +  L LS N        EL +        ++ L+LS N LG +   ++
Sbjct: 12  NPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDEL 71

Query: 94  CNM-----ESLEKLNLSHNNLSG----------SIPNCFEGMHGLSVIDISDNQLQ 134
             +      ++  LNLS N LS           +          ++V+D+  N   
Sbjct: 72  VQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPF-----TITVLDLGWNDFS 122

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 18/130 (13%), Positives = 37/130 (28%), Gaps = 21/130 (16%)

Query: 1   NSLTKLILRGNQLTG----RLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLK------ 50
           N +  L L  N L G     L     S K L+ + L  +   N   +   +L        
Sbjct: 225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQ 284

Query: 51  -LHYLSLSNNQFVQELPKELEKLVQ-----LSELDLSHNFL-----GGELLSQICNMESL 99
            +  +  +  +        +  L++          L +  L         +  +   + L
Sbjct: 285 KIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDEL 344

Query: 100 EKLNLSHNNL 109
            +   +   L
Sbjct: 345 RESIQTCKPL 354

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 8/111 (7%)

Query: 1   NSLTKLILRGNQLT-GRLPTEIGSFKELEYLDLSANRFNNSVPK--SLGSLLKLHYLSLS 57
           + + +L+L  ++   G+L      F+ELE+L       N  +    +L  L KL  L LS
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTI----NVGLTSIANLPKLNKLKKLELS 72

Query: 58  NNQFVQELPKELEKLVQLSELDLSHNFLGG-ELLSQICNMESLEKLNLSHN 107
           +N+    L    EK   L+ L+LS N +     +  +  +E+L+ L+L + 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 52.0 bits (125), Expect = 6e-09
 Identities = 19/89 (21%), Positives = 42/89 (47%), Gaps = 3/89 (3%)

Query: 47  SLLKLHYLSLSNNQF-VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLS 105
           +   +  L L N++    +L    ++  +L  L   +  L    ++ +  +  L+KL LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL--TSIANLPKLNKLKKLELS 72

Query: 106 HNNLSGSIPNCFEGMHGLSVIDISDNQLQ 134
            N +SG +    E    L+ +++S N+++
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 54.4 bits (131), Expect = 1e-09
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 8/111 (7%)

Query: 1   NSLTKLILRGNQLT-GRLPTEIGSFKELEYLDLSANRFNNSVPK--SLGSLLKLHYLSLS 57
            ++ +L+L   +   G++      F  LE+L L     N  +    +L  L KL  L LS
Sbjct: 24  AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLI----NVGLISVSNLPKLPKLKKLELS 79

Query: 58  NNQFVQELPKELEKLVQLSELDLSHNFLGG-ELLSQICNMESLEKLNLSHN 107
            N+    L    EKL  L+ L+LS N L     L  +  +E L+ L+L + 
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.1 bits (120), Expect = 4e-08
 Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query: 47  SLLKLHYLSLSNNQFVQELPKEL-EKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLS 105
           +   +  L L N +      + L  + V L  L L +  L    +S +  +  L+KL LS
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL--ISVSNLPKLPKLKKLELS 79

Query: 106 HNNLSGSIPNCFEGMHGLSVIDISDNQLQ 134
            N + G +    E +  L+ +++S N+L+
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 5e-05
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 4/82 (4%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNN-SVPKSLGSLLKLHYLSLSNNQ 60
            L KL L  N++ G L         L +L+LS N+  + S  + L  L  L  L L N +
Sbjct: 72  KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131

Query: 61  FVQEL---PKELEKLVQLSELD 79
                       + L QL+ LD
Sbjct: 132 VTNLNDYRESVFKLLPQLTYLD 153

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 32/109 (29%), Positives = 45/109 (41%), Gaps = 4/109 (3%)

Query: 1   NSLTKLILRGNQLTGRLPTEI-GSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNN 59
            +L +L L  NQL   LP  +  S  +L  LDL  N+           L+ L  L +  N
Sbjct: 64  INLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN 122

Query: 60  QFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNN 108
           +   ELP+ +E+L  L+ L L  N L          + SL    L   N
Sbjct: 123 KL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL-FGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 53.2 bits (128), Expect = 6e-09
 Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 21/127 (16%)

Query: 28  EYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKEL-EKLVQLSELDLSHNFLG 86
           + L L  N+     P    SL+ L  L L +NQ    LP  + + L QL+ LDL  N   
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTN--- 98

Query: 87  GELLSQICNMES--------LEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVP 138
                Q+  + S        L++L +  N L+  +P   E +  L+ + +  NQL+  +P
Sbjct: 99  -----QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS-IP 151

Query: 139 NSTAFRN 145
           +  AF  
Sbjct: 152 HG-AFDR 157

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 42/132 (31%), Positives = 61/132 (46%), Gaps = 7/132 (5%)

Query: 4   TKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSL-GSLLKLHYLSLSNNQFV 62
             L L  NQ+T   P    S   L+ L L +N+   ++P  +  SL +L  L L  NQ +
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQ-L 100

Query: 63  QELPKEL-EKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPN-CFEGM 120
             LP  + ++LV L EL +  N L  EL   I  +  L  L L  N L  SIP+  F+ +
Sbjct: 101 TVLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRL 158

Query: 121 HGLSVIDISDNQ 132
             L+   +  N 
Sbjct: 159 SSLTHAYLFGNP 170

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.5 bits (129), Expect = 2e-09
 Identities = 16/105 (15%), Positives = 40/105 (38%), Gaps = 5/105 (4%)

Query: 30  LDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGEL 89
           + L+A     +      + ++   L L   + +  +      L Q   +D S N +    
Sbjct: 2   VKLTAELIEQA--AQYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEI--RK 56

Query: 90  LSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQ 134
           L     +  L+ L +++N +        + +  L+ + +++N L 
Sbjct: 57  LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.1 bits (128), Expect = 3e-09
 Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 8/109 (7%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPK--SLGSLLKLHYLSLSNN 59
              +L LRG ++   +     +  + + +D S    +N + K      L +L  L ++NN
Sbjct: 20  RDRELDLRGYKIP-VIENLGATLDQFDAIDFS----DNEIRKLDGFPLLRRLKTLLVNNN 74

Query: 60  QFVQELPKELEKLVQLSELDLSHNFLGG-ELLSQICNMESLEKLNLSHN 107
           +  +      + L  L+EL L++N L     L  + +++SL  L +  N
Sbjct: 75  RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 22/115 (19%), Positives = 49/115 (42%), Gaps = 6/115 (5%)

Query: 19  TEIGSFKELEYLDLSANRFNNSVPKSLGSLL-KLHYLSLSNNQFVQELPKELEKLVQLSE 77
            +  +      LDL   +    V ++LG+ L +   +  S+N+ +++L      L +L  
Sbjct: 13  AQYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNE-IRKLDG-FPLLRRLKT 68

Query: 78  LDLSHNFLGGELLSQICNMESLEKLNLSHNNLSG-SIPNCFEGMHGLSVIDISDN 131
           L +++N +          +  L +L L++N+L      +    +  L+ + I  N
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 1/65 (1%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNN-SVPKSLGSLLKLHYLSLSNN 59
             L  L++  N++         +  +L  L L+ N          L SL  L YL +  N
Sbjct: 64  RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

Query: 60  QFVQE 64
               +
Sbjct: 124 PVTNK 128

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 34/151 (22%), Positives = 54/151 (35%), Gaps = 18/151 (11%)

Query: 2   SLTKLILRGNQLTGRLPTEIGS-FKELEYLDLSANRFNNSVPKSLGSLLK-----LHYLS 55
           +L ++ L   QL       +   F     L L  N       K L  LL      +  L 
Sbjct: 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLR 161

Query: 56  LSNNQF----VQELPKELEKLVQLSELDLSHNFLGGELLSQICNM----ESLEKLNLSHN 107
           LSNN      V  L + L     ++ L L H  LG E L  +         L++LN+++N
Sbjct: 162 LSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN 221

Query: 108 NLSGS----IPNCFEGMHGLSVIDISDNQLQ 134
               +    +         L ++ +  N+L 
Sbjct: 222 GAGDTAALALARAAREHPSLELLHLYFNELS 252

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 21/125 (16%)

Query: 27  LEYLDLSANRFNNSVPKSLGSLLK-----LHYLSLSNNQF----VQELPKELEKLVQLSE 77
           L  L+L+  R        + ++L      L  ++L++ Q     ++ L   L   ++  +
Sbjct: 74  LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL---LPVFLRARK 130

Query: 78  LDLSHNFLGGELLSQIC-----NMESLEKLNLSHNNLSGS----IPNCFEGMHGLSVIDI 128
           L L  N LG E    +      +   +  L LS+N L+ +    +     G   ++ + +
Sbjct: 131 LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSL 190

Query: 129 SDNQL 133
               L
Sbjct: 191 LHTGL 195

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 44.7 bits (106), Expect = 6e-06
 Identities = 22/128 (17%), Positives = 37/128 (28%), Gaps = 19/128 (14%)

Query: 2   SLTKLILRGNQLTGR----LPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLK----LHY 53
            +T L L  N LT      L   +     + +L L      +   + L + L     L  
Sbjct: 156 QITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQE 215

Query: 54  LSLSNNQF----VQELPKELEKLVQLSELDLSHNFLG-------GELLSQICNMESLEKL 102
           L+++ N         L +   +   L  L L  N L         +L         +   
Sbjct: 216 LNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVS 275

Query: 103 NLSHNNLS 110
                 +S
Sbjct: 276 LTEGTAVS 283

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 19/115 (16%)

Query: 28  EYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKEL-EKLVQLSELDLSHNFLG 86
             L L  N+F   VPK L +   L  + LSNN+ +  L  +    + QL  L LS+N L 
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNRLR 91

Query: 87  GELLSQIC-------NMESLEKLNLSHNNLSGSIPN-CFEGMHGLSVIDISDNQL 133
                  C        ++SL  L+L  N++S  +P   F  +  LS + I  N L
Sbjct: 92  -------CIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPL 138

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 21/101 (20%)

Query: 54  LSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQIC--------NMESLEKLNLS 105
           L L  NQF   +PKEL     L+ +DLS+N        +I         NM  L  L LS
Sbjct: 36  LYLDGNQF-TLVPKELSNYKHLTLIDLSNN--------RISTLSNQSFSNMTQLLTLILS 86

Query: 106 HNNLSGSIPN-CFEGMHGLSVIDISDNQLQGPVPNSTAFRN 145
           +N L   IP   F+G+  L ++ +  N +   VP   AF +
Sbjct: 87  YNRLR-CIPPRTFDGLKSLRLLSLHGNDISV-VPEG-AFND 124

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 10/88 (11%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSF---KELEYLDLSANRFNNSVPKSL-GSLLKLHYLSL 56
             LT + L  N+++  L     SF    +L  L LS NR    +P      L  L  LSL
Sbjct: 54  KHLTLIDLSNNRIS-TLSN--QSFSNMTQLLTLILSYNRL-RCIPPRTFDGLKSLRLLSL 109

Query: 57  SNNQFVQELPKEL-EKLVQLSELDLSHN 83
             N  +  +P+     L  LS L +  N
Sbjct: 110 HGND-ISVVPEGAFNDLSALSHLAIGAN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 50.0 bits (120), Expect = 5e-08
 Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 19/114 (16%)

Query: 4   TKLILRGNQLTGRLPTEI-GSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFV 62
           T+L+L  N+L       + G    L  L+L  N+     P +      +  L L  N+  
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI- 90

Query: 63  QELPKEL-EKLVQLSELDLSHNFLGGELLSQIC--------NMESLEKLNLSHN 107
           +E+  ++   L QL  L+L  N        QI         ++ SL  LNL+ N
Sbjct: 91  KEISNKMFLGLHQLKTLNLYDN--------QISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 21/103 (20%)

Query: 53  YLSLSNNQFVQELPKEL-EKLVQLSELDLSHNFLGGELLSQICNMES--------LEKLN 103
            L L++N+  +     L  +L  L +L+L  N        Q+  +E         +++L 
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRN--------QLTGIEPNAFEGASHIQELQ 84

Query: 104 LSHNNLSGSIPN-CFEGMHGLSVIDISDNQLQGPVPNSTAFRN 145
           L  N +   I N  F G+H L  +++ DNQ+   V    +F +
Sbjct: 85  LGENKIK-EISNKMFLGLHQLKTLNLYDNQISC-VMPG-SFEH 124

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 50.4 bits (121), Expect = 7e-08
 Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 4/86 (4%)

Query: 2   SLTKLILRGNQLTGRLPTEI-GSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
           +L +L+L  NQL   LP  +      L YL+L+ N+  +        L  L  L LS NQ
Sbjct: 110 NLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ 168

Query: 61  FVQELPKEL-EKLVQLSELDLSHNFL 85
             Q LP+ + +KL QL +L L  N L
Sbjct: 169 L-QSLPEGVFDKLTQLKDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 38/145 (26%), Positives = 57/145 (39%), Gaps = 26/145 (17%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLG---SLLKLHYLSLS 57
           NS+ ++I   + +       I     + YL L  N+        +     L  L YL L+
Sbjct: 41  NSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKL-----HDISALKELTNLTYLILT 93

Query: 58  NNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMES--------LEKLNLSHNNL 109
            NQ         +KL  L EL L  N        Q+ ++          L  LNL+HN L
Sbjct: 94  GNQLQSLPNGVFDKLTNLKELVLVEN--------QLQSLPDGVFDKLTNLTYLNLAHNQL 145

Query: 110 SGSIPNCFEGMHGLSVIDISDNQLQ 134
                  F+ +  L+ +D+S NQLQ
Sbjct: 146 QSLPKGVFDKLTNLTELDLSYNQLQ 170

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 49.2 bits (118), Expect = 8e-08
 Identities = 33/105 (31%), Positives = 44/105 (41%), Gaps = 2/105 (1%)

Query: 4   TKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQ 63
           T+L L  N+L            +L  L LS N+  +        L KL  L L  N+  Q
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL-Q 89

Query: 64  ELPKEL-EKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHN 107
            LP  + +KL QL EL L  N L          + SL+K+ L  N
Sbjct: 90  SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 4/107 (3%)

Query: 28  EYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKEL-EKLVQLSELDLSHNFLG 86
             L+L +N+  +        L +L  LSLS NQ  Q LP  + +KL +L+ L L  N L 
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYLHENKLQ 89

Query: 87  GELLSQICNMESLEKLNLSHNNLSGSIPN-CFEGMHGLSVIDISDNQ 132
                    +  L++L L  N L  S+P+  F+ +  L  I +  N 
Sbjct: 90  SLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNP 135

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.7 bits (114), Expect = 4e-07
 Identities = 45/138 (32%), Positives = 60/138 (43%), Gaps = 18/138 (13%)

Query: 4   TKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSL-GSLLKLHYLSLSNNQFV 62
           T L L  N L             L  L L  N+   S+P  +   L  L YL+LS NQ  
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQL- 88

Query: 63  QELPKEL-EKLVQLSELDLSHNFLGG------ELLSQICNMESLEKLNLSHNNLSGSIPN 115
           Q LP  + +KL QL EL L+ N L        + L+Q      L+ L L  N L  S+P+
Sbjct: 89  QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQ------LKDLRLYQNQLK-SVPD 141

Query: 116 -CFEGMHGLSVIDISDNQ 132
             F+ +  L  I + DN 
Sbjct: 142 GVFDRLTSLQYIWLHDNP 159

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.4 bits (113), Expect = 5e-07
 Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 22/128 (17%)

Query: 28  EYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKEL-EKLVQLSELDLSHNFLG 86
            YLDL  N   +        L  L  L L  N+  Q LP  +  KL  L+ L+LS N   
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTN--- 86

Query: 87  GELLSQICNMES--------LEKLNLSHNNLSGSIPN-CFEGMHGLSVIDISDNQLQGPV 137
                Q+ ++ +        L++L L+ N L  S+P+  F+ +  L  + +  NQL+  V
Sbjct: 87  -----QLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKS-V 139

Query: 138 PNSTAFRN 145
           P+   F  
Sbjct: 140 PDG-VFDR 146

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 38.1 bits (89), Expect = 9e-04
 Identities = 29/85 (34%), Positives = 35/85 (41%), Gaps = 26/85 (30%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           SLT L L  NQL   LP   G F                       L +L  L+L+ NQ 
Sbjct: 77  SLTYLNLSTNQLQ-SLPN--GVFD---------------------KLTQLKELALNTNQL 112

Query: 62  VQELPKEL-EKLVQLSELDLSHNFL 85
            Q LP  + +KL QL +L L  N L
Sbjct: 113 -QSLPDGVFDKLTQLKDLRLYQNQL 136

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 44.2 bits (105), Expect = 6e-06
 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 14/99 (14%)

Query: 27  LEYLDLSANRFNNSVPKSLGSLLK----LHYLSLSNNQF----VQELPKELEKLVQLSEL 78
           ++   +   R N+ V  +L  +LK    L  L++ +N      +  L + L+    L EL
Sbjct: 67  VKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIEL 126

Query: 79  DLSHNF--LGGELLSQICNM----ESLEKLNLSHNNLSG 111
            + +    LG  +  +I NM     +L K          
Sbjct: 127 RIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 40.9 bits (96), Expect = 3e-05
 Identities = 17/108 (15%), Positives = 34/108 (31%), Gaps = 14/108 (12%)

Query: 40  SVPKSLGSLLKLHYLSLSNNQFVQELPKE-LEKLVQLSELDLSHNFLGGELLSQICNMES 98
           S+P +         L L+ N     LP   L+ L  L    L  N    +     C +  
Sbjct: 24  SLPTAFPVDTT--ELVLTGNNL-TALPPGLLDALPALRTAHLGANPWRCD-----CRLVP 75

Query: 99  LEKLNLSHNNLSGSIPNCF----EGMHGLSVIDISDNQLQGPVPNSTA 142
           L +  L+         +        + G  +  +++++L+        
Sbjct: 76  L-RAWLAGRPERAPYRDLRCVAPPALRGRLLPYLAEDELRAACAPGPL 122

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 12/97 (12%), Positives = 37/97 (38%), Gaps = 6/97 (6%)

Query: 16  RLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFV-----QELPKELE 70
            LPT      +++ +D + +   +     +  L  +  + L    ++     + L +   
Sbjct: 52  HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLEN 111

Query: 71  KLVQLSELDLSHNF-LGGELLSQICNMESLEKLNLSH 106
               + E+++     +  + +  + +  +L+ L LS 
Sbjct: 112 LQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSD 148

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 33/138 (23%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSA-NRFNNSVPKSLGSLL-KLHYLSLSN- 58
            L  L L G +L+  +   +     L  L+LS  + F+    ++L S   +L  L+LS  
Sbjct: 119 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178

Query: 59  --------NQFVQELPKELEKL---------------------VQLSELDLSH-NFLGGE 88
                      V  + + + +L                       L  LDLS    L  +
Sbjct: 179 FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND 238

Query: 89  LLSQICNMESLEKLNLSH 106
              +   +  L+ L+LS 
Sbjct: 239 CFQEFFQLNYLQHLSLSR 256

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 15/100 (15%)

Query: 27  LEYLDLSANRFNNSVPKSLGSLLK----LHYLSLSNNQF----VQELPKELEKLVQLSEL 78
           +E   L+    ++S  + L  L++    L  L++ +N      +  L +       + E 
Sbjct: 72  IEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEF 131

Query: 79  DLS---HNFLGGELLSQICNM----ESLEKLNLSHNNLSG 111
                  + LG ++   +       ESL ++ +S  ++  
Sbjct: 132 KADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEA 171

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	207
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.92
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.91
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.91
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.91
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.88
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.88
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.88
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.87
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.87
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.86
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.86
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.86
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.86
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.86
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.86
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.86
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.85
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.85
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.85
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.85
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.85
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.85
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.85
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.85
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.84
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.84
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.84
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.83
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.83
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.83
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.83
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.82
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.82
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.82
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.82
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.82
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.82
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.82
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.82
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.81
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.81
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.81
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.81
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.81
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.81
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.81
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.8
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.8
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.8
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.8
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.8
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.8
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.8
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.8
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.8
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.79
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.79
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.79
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.79
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.79
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.78
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.78
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.78
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.78
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.78
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.78
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.78
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.77
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.77
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.77
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.77
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.77
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.76
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.76
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.76
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.75
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.75
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.74
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.74
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.73
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.73
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.73
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.72
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.72
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.72
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.7
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.7
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.7
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.7
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.69
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.68
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.67
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.67
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.65
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.64
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.63
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.63
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.63
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.62
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.61
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.61
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.6
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.6
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.6
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.59
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.57
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.57
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.56
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.56
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.54
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.51
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.51
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.49
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.46
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.44
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.4
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.4
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.38
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.36
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.2
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.08
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.06
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.01
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.01
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.96
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.92
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.89
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.86
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.83
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.68
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.59
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.58
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.57
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.24
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.23
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.23
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.2
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.15
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.08
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.05
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.95
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.75
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.41
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	95.09
2k1k_A	38	Ephrin type-A receptor 1; EPHA1, receptor tyrosine	93.75
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	93.55
2k9y_A	41	Ephrin type-A receptor 2; receptor tyrosine kinase	92.42
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	92.01
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	91.95
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	88.06
1iij_A	35	ERBB-2 receptor protein-tyrosine kinase; alpha-hel	86.91
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	83.94

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.92  E-value=1.1e-24  Score=185.91  Aligned_cols=121  Identities=31%  Similarity=0.519  Sum_probs=109.6

Q ss_pred             CCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEE
Q 048618           48 LLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVID  127 (207)
Q Consensus        48 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~  127 (207)
                      +++|+.|++++|++++.+|..++.++.|+.|++++|.+++.+|..++.+++|+.|+|++|.+++.+|..+..+++|+.|+
T Consensus       631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~  710 (768)
T 3rgz_A          631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID  710 (768)
T ss_dssp             SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred             cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence            45677888888888888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcCcccCCCCcccCCCCcccccCCCCCCCCCCCCCCCccc
Q 048618          128 ISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQPCKVF  170 (207)
Q Consensus       128 l~~n~~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~~~~~~~~  170 (207)
                      +++|+++|.+|....+..+....+.+|+.+|+.+..  .|...
T Consensus       711 ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~--~C~~~  751 (768)
T 3rgz_A          711 LSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP--RCDPS  751 (768)
T ss_dssp             CCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC--CCCSC
T ss_pred             CcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc--CCCCC
Confidence            999999999999988999999999999999997643  66543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.91  E-value=2.1e-23  Score=155.77  Aligned_cols=158  Identities=24%  Similarity=0.292  Sum_probs=142.2

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +++.|++++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|..+++|++|+++
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  115 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG  115 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence            68899999999998888899999999999999999998888889999999999999999998888889999999999999


Q ss_pred             CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccccCCCCCCC
Q 048618           82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGNKELCG  159 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~n~~~c~  159 (207)
                      +|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++...+.. ..+..+..+.+.+|+..|.
T Consensus       116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            99999777777888999999999999999777778999999999999999999776643 5667888899999998886

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.91  E-value=1.1e-24  Score=159.78  Aligned_cols=139  Identities=21%  Similarity=0.294  Sum_probs=126.0

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      ++++.|++++|.+++..+..|..+++|++|+|++|.+.+..|..|.++++|+.|++++|.+....+..|..+++|++|++
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            36889999999999888888999999999999999999888889999999999999999998877777889999999999


Q ss_pred             CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCC
Q 048618           81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPN  139 (207)
Q Consensus        81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  139 (207)
                      ++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|++.|.+..
T Consensus       112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l  170 (220)
T 2v9t_B          112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL  170 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence            99999988888899999999999999999988888899999999999999999887664

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.91  E-value=5.4e-24  Score=163.94  Aligned_cols=160  Identities=26%  Similarity=0.399  Sum_probs=117.3

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCC-CCCeeeccCCc--------------------
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLL-KLHYLSLSNNQ--------------------   60 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~l~~n~--------------------   60 (207)
                      +|++|++++|.+++..|..+..+++|++|++++|.+++.+|..+..++ +|+.|++++|.                    
T Consensus       126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls  205 (313)
T 1ogq_A          126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLS  205 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECC
T ss_pred             CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECc
Confidence            456666666666656666666666666666666666555555555554 55555555554                    


Q ss_pred             ---CCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccC
Q 048618           61 ---FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPV  137 (207)
Q Consensus        61 ---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~  137 (207)
                         +.+..|..+..+++|+.|++++|.+++..+. +..+++|+.|++++|.+++..|..+..+++|+.|++++|++++.+
T Consensus       206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i  284 (313)
T 1ogq_A          206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI  284 (313)
T ss_dssp             SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred             CCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC
Confidence               4444555666677777777777777655444 667788899999999998888999999999999999999999999


Q ss_pred             CCCcccCCCCcccccCCCCCCCCCC
Q 048618          138 PNSTAFRNAPVEALEGNKELCGGVK  162 (207)
Q Consensus       138 ~~~~~~~~~~~~~~~~n~~~c~~~~  162 (207)
                      |....++.+..+.+.+|+.+|+.+.
T Consensus       285 p~~~~l~~L~~l~l~~N~~lc~~p~  309 (313)
T 1ogq_A          285 PQGGNLQRFDVSAYANNKCLCGSPL  309 (313)
T ss_dssp             CCSTTGGGSCGGGTCSSSEEESTTS
T ss_pred             CCCccccccChHHhcCCCCccCCCC
Confidence            9888888999999999999998654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.90  E-value=4.5e-24  Score=156.47  Aligned_cols=139  Identities=18%  Similarity=0.219  Sum_probs=118.8

Q ss_pred             CccEEECCCCCCcccCC-cccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            2 SLTKLILRGNQLTGRLP-TEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      .++.|++++|.+++..+ ..|.++++|++|++++|.+++..+..|..+++|+.|++++|.+.+..+..|..+++|++|++
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  112 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML  112 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence            46788999999887644 45788899999999999988777778888999999999999998888888888999999999


Q ss_pred             CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC
Q 048618           81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS  140 (207)
Q Consensus        81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~  140 (207)
                      ++|.+++..+..+..+++|+.|++++|.+++..|..+..+++|+.+++++|+++|.++..
T Consensus       113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~  172 (220)
T 2v70_A          113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLA  172 (220)
T ss_dssp             TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGH
T ss_pred             CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchH
Confidence            999998877888888889999999999998777888888899999999999998877643

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=2.3e-22  Score=151.67  Aligned_cols=159  Identities=23%  Similarity=0.273  Sum_probs=93.1

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +|+.|++++|.++...+..|.++++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|..+++|++|+++
T Consensus        62 ~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  141 (270)
T 2o6q_A           62 KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG  141 (270)
T ss_dssp             TCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECC
Confidence            34555555555554434444555555555555555554444445555555555555555555555555566666666666


Q ss_pred             CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccccCCCCCCCC
Q 048618           82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGNKELCGG  160 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~n~~~c~~  160 (207)
                      +|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++...+.. ..++.+..+.+.+|+..|+.
T Consensus       142 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          142 YNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred             CCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence            66665544444566666666666666666555555666677777777777766544432 34566667777777776664

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.89  E-value=1.8e-22  Score=148.84  Aligned_cols=139  Identities=26%  Similarity=0.281  Sum_probs=124.3

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      ++|+.|++++|.+++..|..|.++++|++|+|++|.+....+..|..+++|+.|++++|.+.+..+..|..+++|++|++
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            46899999999999888999999999999999999998777777899999999999999998887888889999999999


Q ss_pred             CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC
Q 048618           81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS  140 (207)
Q Consensus        81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~  140 (207)
                      ++|.++ .+|..+..+++|+.|++++|.+++..+..+..+++|+.+++++|++.|.++..
T Consensus       120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~  178 (229)
T 3e6j_A          120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDI  178 (229)
T ss_dssp             CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGG
T ss_pred             cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchh
Confidence            999998 66777888999999999999999777778889999999999999999887643

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=7.6e-22  Score=149.04  Aligned_cols=158  Identities=24%  Similarity=0.283  Sum_probs=125.6

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      ++|+.|++++|.+++.  +.+..+++|++|++++|.+++..+..|..+++|+.|++++|.+.+..+..+..+++|++|++
T Consensus        63 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  140 (272)
T 3rfs_A           63 PNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL  140 (272)
T ss_dssp             TTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence            4678888888888753  46788888888888888888777777788888888888888888777777888888888888


Q ss_pred             CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccccCCCCCCC
Q 048618           81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGNKELCG  159 (207)
Q Consensus        81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~n~~~c~  159 (207)
                      ++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+.. ..++.+..+++.+|+..|.
T Consensus       141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  220 (272)
T 3rfs_A          141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT  220 (272)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc
Confidence            888888766666778888888888888888777777788888888888888888766654 5667788888888877765


Q ss_pred             C
Q 048618          160 G  160 (207)
Q Consensus       160 ~  160 (207)
                      .
T Consensus       221 ~  221 (272)
T 3rfs_A          221 C  221 (272)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=4.9e-22  Score=148.36  Aligned_cols=139  Identities=26%  Similarity=0.268  Sum_probs=128.9

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      ++|+.|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|+.|++++|.+.+..+..|..+++|++|++
T Consensus        59 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  138 (251)
T 3m19_A           59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL  138 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEEC
Confidence            47899999999999988889999999999999999999888888999999999999999999888888899999999999


Q ss_pred             CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCC
Q 048618           81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPN  139 (207)
Q Consensus        81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  139 (207)
                      ++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|+++|....
T Consensus       139 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~  197 (251)
T 3m19_A          139 NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCE  197 (251)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTT
T ss_pred             cCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccc
Confidence            99999987777899999999999999999988888899999999999999999987443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.88  E-value=8.6e-22  Score=143.00  Aligned_cols=139  Identities=27%  Similarity=0.286  Sum_probs=123.7

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +++.|++++|.+++..+..+.++++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|++|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN  108 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence            68899999999997777788999999999999999997777778899999999999999988777778899999999999


Q ss_pred             CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC
Q 048618           82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS  140 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~  140 (207)
                      +|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|++.+.++..
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l  167 (208)
T 2o6s_A          109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI  167 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTTT
T ss_pred             CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCCCH
Confidence            99998777777888999999999999999777777889999999999999998887754

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.88  E-value=9.7e-23  Score=146.34  Aligned_cols=159  Identities=23%  Similarity=0.311  Sum_probs=133.0

Q ss_pred             cEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcch-hhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCC
Q 048618            4 TKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPK-SLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSH   82 (207)
Q Consensus         4 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   82 (207)
                      +.+++++|.++ .+|..+..  ++++|++++|.+.+..+. .|..+++|+.|++++|.+++..|..|..+++|++|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            67999999997 67776644  999999999999876664 489999999999999999998899999999999999999


Q ss_pred             CCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCCCCCCCC
Q 048618           83 NFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVK  162 (207)
Q Consensus        83 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~  162 (207)
                      |++++..+..+..+++|+.|++++|.+++..|..+..+++|+.+++++|+++|.++.......+......++...|..+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~  167 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS  167 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCCh
Confidence            99998888889999999999999999998889999999999999999999999877543222222233445566677665


Q ss_pred             CCC
Q 048618          163 GMQ  165 (207)
Q Consensus       163 ~~~  165 (207)
                      ...
T Consensus       168 ~l~  170 (192)
T 1w8a_A          168 KVR  170 (192)
T ss_dssp             TTT
T ss_pred             HHc
Confidence            443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.88  E-value=3.4e-22  Score=151.80  Aligned_cols=135  Identities=27%  Similarity=0.293  Sum_probs=70.8

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCC-CCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANR-FNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      +|+.|++++|.+++..|..+.++++|++|++++|. +....+..|..+++|+.|++++|.+.+..+..+..+++|++|++
T Consensus        57 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  136 (285)
T 1ozn_A           57 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL  136 (285)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEEC
Confidence            45556666666555555555555666666665554 44444555555555555555555555544555555555555555


Q ss_pred             CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCccc
Q 048618           81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGP  136 (207)
Q Consensus        81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~  136 (207)
                      ++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++.
T Consensus       137 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  192 (285)
T 1ozn_A          137 QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV  192 (285)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence            55555544444444455555555555555433333444444444444444444443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=8.8e-22  Score=148.68  Aligned_cols=140  Identities=29%  Similarity=0.348  Sum_probs=130.2

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      ++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|++|++
T Consensus        85 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  164 (272)
T 3rfs_A           85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL  164 (272)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence            47899999999999888888999999999999999999888888999999999999999999888888899999999999


Q ss_pred             CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC
Q 048618           81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS  140 (207)
Q Consensus        81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~  140 (207)
                      ++|++++..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|++.|.+|..
T Consensus       165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l  224 (272)
T 3rfs_A          165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI  224 (272)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             CCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcHH
Confidence            999999887777889999999999999999888888999999999999999999988864

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=1.3e-21  Score=149.04  Aligned_cols=138  Identities=29%  Similarity=0.300  Sum_probs=97.7

Q ss_pred             CCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCE
Q 048618           22 GSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEK  101 (207)
Q Consensus        22 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  101 (207)
                      ..+++|++|++++|.+. .+|..+..+++|+.|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|+.
T Consensus        74 ~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  152 (290)
T 1p9a_G           74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK  152 (290)
T ss_dssp             SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCE
Confidence            34445555555555554 44555667777777777777777666677777788888888888877666666777778888


Q ss_pred             EeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCCCCCC
Q 048618          102 LNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGG  160 (207)
Q Consensus       102 L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~~c~~  160 (207)
                      |++++|.+++..+..+..+++|+.|++++|+++...+.......+..+.+.+|+..|.+
T Consensus       153 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             EECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             EECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcC
Confidence            88888888766666677778888888888888755555555666777778888887753

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.88  E-value=7.6e-23  Score=155.39  Aligned_cols=161  Identities=22%  Similarity=0.255  Sum_probs=138.7

Q ss_pred             CCccEEECCCCC-CcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEe
Q 048618            1 NSLTKLILRGNQ-LTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELD   79 (207)
Q Consensus         1 ~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   79 (207)
                      ++|+.|++++|. +....+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|++|+
T Consensus        80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  159 (285)
T 1ozn_A           80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF  159 (285)
T ss_dssp             TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEE
Confidence            468999999997 8877788899999999999999999988888899999999999999999877777788899999999


Q ss_pred             cCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCC-CcccCCCCcccccCCCCCC
Q 048618           80 LSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPN-STAFRNAPVEALEGNKELC  158 (207)
Q Consensus        80 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~-~~~~~~~~~~~~~~n~~~c  158 (207)
                      +++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+. ...++.+..+++.+|+..|
T Consensus       160 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             CCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence            999999876666788899999999999999888888899999999999999999875544 2566778888889998888


Q ss_pred             CCC
Q 048618          159 GGV  161 (207)
Q Consensus       159 ~~~  161 (207)
                      +..
T Consensus       240 ~~~  242 (285)
T 1ozn_A          240 DCR  242 (285)
T ss_dssp             SGG
T ss_pred             CCC
Confidence            653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.88  E-value=1.3e-21  Score=143.30  Aligned_cols=154  Identities=25%  Similarity=0.336  Sum_probs=138.3

Q ss_pred             cEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCC
Q 048618            4 TKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHN   83 (207)
Q Consensus         4 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   83 (207)
                      +.++.+++.++ .+|..+.  ++++.|++++|.+.+..+..|..+++|+.|++++|.+.+..|+.|.++++|++|++++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            46889999998 5676554  78999999999999877778999999999999999999888999999999999999999


Q ss_pred             CCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccccCCCCCCCC
Q 048618           84 FLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGNKELCGG  160 (207)
Q Consensus        84 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~n~~~c~~  160 (207)
                      .++...+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.++...+.. ..+..+..+.+.+|+..|++
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  168 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC  168 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence            999777777889999999999999999888999999999999999999999877754 55788889999999998864

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.87  E-value=7.9e-21  Score=143.29  Aligned_cols=156  Identities=21%  Similarity=0.245  Sum_probs=139.3

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +++.|++++|.++...+..|.++++|++|++++|.+....+..|..+++|+.|++++|.+....+..|..+++|++|+++
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  117 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD  117 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence            68999999999998777899999999999999999997777778899999999999999998888888999999999999


Q ss_pred             CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccccCCCCC
Q 048618           82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGNKEL  157 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~n~~~  157 (207)
                      +|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.++...+.. ..+..+..+++.+|...
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (270)
T 2o6q_A          118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK  194 (270)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC
Confidence            99999888888899999999999999999777778899999999999999998776653 45678888888887544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.87  E-value=2.4e-22  Score=154.74  Aligned_cols=154  Identities=22%  Similarity=0.352  Sum_probs=80.5

Q ss_pred             CccEEECCC-CCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            2 SLTKLILRG-NQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         2 ~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      +|+.|++++ |.+.+.+|..+.++++|++|++++|.+.+..|..|..+++|++|++++|.+.+..|..+..+++|++|++
T Consensus        77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  156 (313)
T 1ogq_A           77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF  156 (313)
T ss_dssp             TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred             CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence            455555553 5555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CCCCCCCchhHHhhcCC-CCCEEeCCCCcCC-----------------------CCccccccCCCCCCEEECCCCcCccc
Q 048618           81 SHNFLGGELLSQICNME-SLEKLNLSHNNLS-----------------------GSIPNCFEGMHGLSVIDISDNQLQGP  136 (207)
Q Consensus        81 ~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~-----------------------~~~~~~~~~~~~L~~l~l~~n~~~~~  136 (207)
                      ++|.+++..|..+..+. .|+.|++++|.++                       +..+..+..+++|+.|++++|.+++.
T Consensus       157 ~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  236 (313)
T 1ogq_A          157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD  236 (313)
T ss_dssp             CSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred             cCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence            55555544444444444 4555555555444                       44444445555555555555555544


Q ss_pred             CCCCcccCCCCcccccCCC
Q 048618          137 VPNSTAFRNAPVEALEGNK  155 (207)
Q Consensus       137 ~~~~~~~~~~~~~~~~~n~  155 (207)
                      .+.....+.+..+++.+|.
T Consensus       237 ~~~~~~l~~L~~L~Ls~N~  255 (313)
T 1ogq_A          237 LGKVGLSKNLNGLDLRNNR  255 (313)
T ss_dssp             GGGCCCCTTCCEEECCSSC
T ss_pred             cCcccccCCCCEEECcCCc
Confidence            4443344444455554443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.86  E-value=6.6e-21  Score=139.61  Aligned_cols=155  Identities=21%  Similarity=0.270  Sum_probs=137.3

Q ss_pred             cEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcc-hhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCC
Q 048618            4 TKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVP-KSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSH   82 (207)
Q Consensus         4 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   82 (207)
                      +.+++++|.++ .+|..+.  ..+++|++++|.+++..+ ..|..+++|+.|++++|.+.+..+..|..+++|++|++++
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            57899999998 4676553  457899999999997644 4588999999999999999988888999999999999999


Q ss_pred             CCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccccCCCCCCCCC
Q 048618           83 NFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGNKELCGGV  161 (207)
Q Consensus        83 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~n~~~c~~~  161 (207)
                      |.+++..+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|.. ..+..+..+++.+|+..|...
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            9999888888999999999999999999888999999999999999999999886655 567888899999999988753

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.86  E-value=2.9e-21  Score=148.05  Aligned_cols=160  Identities=25%  Similarity=0.293  Sum_probs=123.0

Q ss_pred             CCccEEECCCCCCcccCC-cccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCC-ccchhhhCCCCCCEE
Q 048618            1 NSLTKLILRGNQLTGRLP-TEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQ-ELPKELEKLVQLSEL   78 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L   78 (207)
                      ++|+.|++++|.+++..+ ..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+ ..|..+..+++|++|
T Consensus       101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  180 (306)
T 2z66_A          101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL  180 (306)
T ss_dssp             TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred             CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence            356777777777775544 567778888888888888777777777788888888888888765 467777888888888


Q ss_pred             ecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-ccc-CCCCcccccCCCC
Q 048618           79 DLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAF-RNAPVEALEGNKE  156 (207)
Q Consensus        79 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~-~~~~~~~~~~n~~  156 (207)
                      ++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+.. ..+ ..+..+++.+|+.
T Consensus       181 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred             ECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence            88888888776777888888888888888888766667788888888888888888766654 333 4677788888887


Q ss_pred             CCCC
Q 048618          157 LCGG  160 (207)
Q Consensus       157 ~c~~  160 (207)
                      .|..
T Consensus       261 ~~~c  264 (306)
T 2z66_A          261 ACTC  264 (306)
T ss_dssp             ECSG
T ss_pred             eccc
Confidence            7764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.86  E-value=1.1e-21  Score=153.88  Aligned_cols=159  Identities=23%  Similarity=0.174  Sum_probs=131.9

Q ss_pred             CccEEECCCCCCcccCCcccC-CCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            2 SLTKLILRGNQLTGRLPTEIG-SFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      .++.|+|++|.+++..+..+. ++++|++|+|++|.+.+..+..|..+++|+.|++++|++....+..|..+++|+.|++
T Consensus        40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  119 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL  119 (361)
T ss_dssp             TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence            578999999999988888887 9999999999999999887888999999999999999998888888999999999999


Q ss_pred             CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccc---cCCCCCCEEECCCCcCcccCCCC-cccCC--CCcccccCC
Q 048618           81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCF---EGMHGLSVIDISDNQLQGPVPNS-TAFRN--APVEALEGN  154 (207)
Q Consensus        81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~l~l~~n~~~~~~~~~-~~~~~--~~~~~~~~n  154 (207)
                      ++|.+++..+..+..+++|+.|+|++|.++...+..+   ..+++|+.|++++|+++...+.. ..++.  +..+.+.+|
T Consensus       120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN  199 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred             CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence            9999998888889999999999999999997655666   56899999999999998543221 11221  245677788


Q ss_pred             CCCCCC
Q 048618          155 KELCGG  160 (207)
Q Consensus       155 ~~~c~~  160 (207)
                      +..|++
T Consensus       200 ~~~C~C  205 (361)
T 2xot_A          200 PLECDC  205 (361)
T ss_dssp             CEECCH
T ss_pred             CccCCc
Confidence            877763

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.86  E-value=1.2e-21  Score=140.79  Aligned_cols=133  Identities=28%  Similarity=0.305  Sum_probs=120.5

Q ss_pred             cEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCC
Q 048618            4 TKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHN   83 (207)
Q Consensus         4 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   83 (207)
                      +.+++++|.++ .+|..+.  +++++|++++|.++ .+|..|..+++|+.|++++|.+++..+..|..+++|++|++++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            56899999998 5676553  68999999999998 67789999999999999999999988889999999999999999


Q ss_pred             CCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC
Q 048618           84 FLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS  140 (207)
Q Consensus        84 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~  140 (207)
                      .+++..+..|..+++|+.|++++|.++...+..+..+++|+.+++++|++.|.+...
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~  145 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQ  145 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCH
Confidence            999888888999999999999999999777778999999999999999999887643

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.86  E-value=3.5e-21  Score=155.01  Aligned_cols=140  Identities=24%  Similarity=0.260  Sum_probs=127.5

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +|+.|++++|.+.+..|..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|++|+++
T Consensus       276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  355 (455)
T 3v47_A          276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS  355 (455)
T ss_dssp             CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred             CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence            68899999999998889999999999999999999998888889999999999999999988888889999999999999


Q ss_pred             CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCc
Q 048618           82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNST  141 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~  141 (207)
                      +|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.+++++|+++|.+|...
T Consensus       356 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~  415 (455)
T 3v47_A          356 YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  415 (455)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred             CCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcch
Confidence            999988878889999999999999999997777788899999999999999999998653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.86  E-value=2.1e-20  Score=137.76  Aligned_cols=153  Identities=24%  Similarity=0.275  Sum_probs=136.2

Q ss_pred             cEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCC
Q 048618            4 TKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHN   83 (207)
Q Consensus         4 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   83 (207)
                      +.++.+++.++ .+|..+.  ++|++|++++|.+.+..+..|..+++|+.|++++|.+....+..|..+++|++|++++|
T Consensus        22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            56888999988 5666554  89999999999999988999999999999999999998777788899999999999999


Q ss_pred             CCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccccCCCCCCCC
Q 048618           84 FLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGNKELCGG  160 (207)
Q Consensus        84 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~n~~~c~~  160 (207)
                      .+++..+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.++...+.. ..++.+..+.+.+|+..|..
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            999877777889999999999999999 67888899999999999999999766543 56788899999999998875

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.86  E-value=6.2e-22  Score=151.78  Aligned_cols=164  Identities=20%  Similarity=0.245  Sum_probs=141.5

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCC-CcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEe
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNN-SVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELD   79 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   79 (207)
                      ++|+.|++++|.+.+..+..+.++++|++|++++|.+.+ ..|..+..+++|+.|++++|.+.+..|..+..+++|++|+
T Consensus       126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  205 (306)
T 2z66_A          126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN  205 (306)
T ss_dssp             TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence            478999999999999999999999999999999999986 5788899999999999999999988899999999999999


Q ss_pred             cCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCC-CCCEEECCCCcCcccCCCC---cccCCCCcccccCCC
Q 048618           80 LSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH-GLSVIDISDNQLQGPVPNS---TAFRNAPVEALEGNK  155 (207)
Q Consensus        80 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~l~l~~n~~~~~~~~~---~~~~~~~~~~~~~n~  155 (207)
                      +++|.+++..+..+..+++|+.|++++|.+++..+..+..++ +|+.+++++|+++|.++..   .+++.........+.
T Consensus       206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~  285 (306)
T 2z66_A          206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVER  285 (306)
T ss_dssp             CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGG
T ss_pred             CCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccc
Confidence            999999987777888999999999999999988888898885 8999999999999887653   334444444455666


Q ss_pred             CCCCCCCCC
Q 048618          156 ELCGGVKGM  164 (207)
Q Consensus       156 ~~c~~~~~~  164 (207)
                      ..|..+...
T Consensus       286 ~~C~~p~~~  294 (306)
T 2z66_A          286 MECATPSDK  294 (306)
T ss_dssp             CBEEESGGG
T ss_pred             cccCCchhh
Confidence            677665543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.85  E-value=6.2e-21  Score=162.83  Aligned_cols=157  Identities=34%  Similarity=0.478  Sum_probs=122.8

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +|+.|++++|.+++.+|..+.++++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..+++|++|+++
T Consensus       395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  474 (768)
T 3rgz_A          395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD  474 (768)
T ss_dssp             CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred             CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence            46777777777777777778888888888888888877777788888888888888888877778778888888888888


Q ss_pred             CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccccCCCCCC
Q 048618           82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGNKELC  158 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~n~~~c  158 (207)
                      +|.+++..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..|.. ..++.+..+++.+|...+
T Consensus       475 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g  552 (768)
T 3rgz_A          475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG  552 (768)
T ss_dssp             SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred             CCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence            88887777777788888888888888888777888888888888888888887776654 556667777777776544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.85  E-value=1.1e-20  Score=146.33  Aligned_cols=148  Identities=25%  Similarity=0.353  Sum_probs=76.4

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhC---------C
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEK---------L   72 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------l   72 (207)
                      +|++|++++|.++ .+|..+.++++|++|++++|.+. .+|..+..+++|+.|++++|++.+..|..+..         +
T Consensus       105 ~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l  182 (328)
T 4fcg_A          105 HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL  182 (328)
T ss_dssp             TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred             CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence            4666666666666 56666666666666666666666 55556666666666666665554444443322         4


Q ss_pred             CCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccc
Q 048618           73 VQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEAL  151 (207)
Q Consensus        73 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~  151 (207)
                      ++|++|++++|.++ .+|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+.+..|.. ..+..+..+++
T Consensus       183 ~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L  260 (328)
T 4fcg_A          183 VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL  260 (328)
T ss_dssp             TTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred             CCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence            44555555555444 334444444444444444444442 2333444444444444444444443332 23333334443


Q ss_pred             cC
Q 048618          152 EG  153 (207)
Q Consensus       152 ~~  153 (207)
                      .+
T Consensus       261 ~~  262 (328)
T 4fcg_A          261 KD  262 (328)
T ss_dssp             TT
T ss_pred             CC
Confidence            33

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.85  E-value=6.7e-21  Score=158.47  Aligned_cols=161  Identities=24%  Similarity=0.234  Sum_probs=131.4

Q ss_pred             CCccEEECCCCCCcccCC-cccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCC-ccchhhhCCCCCCEE
Q 048618            1 NSLTKLILRGNQLTGRLP-TEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQ-ELPKELEKLVQLSEL   78 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L   78 (207)
                      ++|+.|++++|.+.+..| ..+.++++|++|++++|.+.+..|..+..+++|+.|++++|.+.+ ..|..+..+++|+.|
T Consensus       399 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  478 (606)
T 3vq2_A          399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL  478 (606)
T ss_dssp             TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred             CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEE
Confidence            367788888888877666 577888888888888888887778888888888888888888876 367778888899999


Q ss_pred             ecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccC-CCCcccccCCCCC
Q 048618           79 DLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFR-NAPVEALEGNKEL  157 (207)
Q Consensus        79 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~-~~~~~~~~~n~~~  157 (207)
                      ++++|.+++..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|+++...+....+. .+..+++.+|+..
T Consensus       479 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~  558 (606)
T 3vq2_A          479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA  558 (606)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred             ECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcc
Confidence            999998887778888888999999999999988888888888999999999999885544444444 4788888899988


Q ss_pred             CCCC
Q 048618          158 CGGV  161 (207)
Q Consensus       158 c~~~  161 (207)
                      |++.
T Consensus       559 c~c~  562 (606)
T 3vq2_A          559 CICE  562 (606)
T ss_dssp             CSST
T ss_pred             cCCc
Confidence            8654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.85  E-value=7.8e-21  Score=158.33  Aligned_cols=138  Identities=26%  Similarity=0.257  Sum_probs=126.9

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      ++++|+|++|.|+.+.+.+|.++++|++|+|++|.|++..+.+|.++++|++|+|++|++.+..++.|.++++|++|+++
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls  132 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  132 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence            68999999999998888899999999999999999998888899999999999999999998888889999999999999


Q ss_pred             CCCCCCchhHHhhcCCCCCEEeCCCCcCCCC-ccccccCCCCCCEEECCCCcCcccCCC
Q 048618           82 HNFLGGELLSQICNMESLEKLNLSHNNLSGS-IPNCFEGMHGLSVIDISDNQLQGPVPN  139 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~l~l~~n~~~~~~~~  139 (207)
                      +|++++..+..++.+++|+.|++++|.+++. .|..+..+++|+.|++++|++++..+.
T Consensus       133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  191 (635)
T 4g8a_A          133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  191 (635)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence            9999987777899999999999999999864 578889999999999999999876554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.85  E-value=4.3e-21  Score=154.48  Aligned_cols=137  Identities=23%  Similarity=0.263  Sum_probs=126.2

Q ss_pred             CCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeC
Q 048618           25 KELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNL  104 (207)
Q Consensus        25 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  104 (207)
                      ++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  354 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL  354 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence            68999999999999888999999999999999999999888999999999999999999999888889999999999999


Q ss_pred             CCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccccCCCCCCCCC
Q 048618          105 SHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGNKELCGGV  161 (207)
Q Consensus       105 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~n~~~c~~~  161 (207)
                      ++|.+++..|..+..+++|+.|++++|+++...+.. ..++.+..+++.+|+..|..+
T Consensus       355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            999999888999999999999999999999766654 567889999999999998865

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.85  E-value=2.7e-20  Score=141.81  Aligned_cols=136  Identities=29%  Similarity=0.291  Sum_probs=124.1

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      ++|+.|++++|.++ .+|..+..+++|++|++++|.+++..+..|..+++|+.|++++|++.+..+..|..+++|+.|++
T Consensus        77 ~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  155 (290)
T 1p9a_G           77 PVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL  155 (290)
T ss_dssp             TTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence            46889999999998 67888999999999999999999888889999999999999999999888888999999999999


Q ss_pred             CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCC
Q 048618           81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVP  138 (207)
Q Consensus        81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  138 (207)
                      ++|++++..+..+..+++|+.|++++|.++ .+|..+....+|+.+++++|++.|.+.
T Consensus       156 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~  212 (290)
T 1p9a_G          156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (290)
T ss_dssp             TTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             CCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence            999999777777888999999999999999 667777788899999999999998764

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.85  E-value=2.6e-20  Score=150.13  Aligned_cols=86  Identities=24%  Similarity=0.280  Sum_probs=53.7

Q ss_pred             CCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccccC
Q 048618           75 LSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEG  153 (207)
Q Consensus        75 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~  153 (207)
                      |+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.++...+.. ..++.+..+++.+
T Consensus       220 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  299 (452)
T 3zyi_A          220 LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH  299 (452)
T ss_dssp             CCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCS
T ss_pred             ccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccC
Confidence            333333444444344555555666666666666666555666666777777777777777555443 4466777888888


Q ss_pred             CCCCCCC
Q 048618          154 NKELCGG  160 (207)
Q Consensus       154 n~~~c~~  160 (207)
                      |+..|++
T Consensus       300 Np~~CdC  306 (452)
T 3zyi_A          300 NPWNCDC  306 (452)
T ss_dssp             SCEECST
T ss_pred             CCcCCCC
Confidence            8888765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.85  E-value=3.2e-20  Score=140.30  Aligned_cols=160  Identities=20%  Similarity=0.187  Sum_probs=107.0

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +|+.|++++|.+++..+..+.++++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|++|+++
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  132 (276)
T 2z62_A           53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA  132 (276)
T ss_dssp             TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECC
T ss_pred             CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECc
Confidence            56777777777776666677777777777777777776666667777777777777777766555556667777777777


Q ss_pred             CCCCCCc-hhHHhhcCCCCCEEeCCCCcCCCCccccccCC---------------------------CCCCEEECCCCcC
Q 048618           82 HNFLGGE-LLSQICNMESLEKLNLSHNNLSGSIPNCFEGM---------------------------HGLSVIDISDNQL  133 (207)
Q Consensus        82 ~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~---------------------------~~L~~l~l~~n~~  133 (207)
                      +|.+++. .|..+..+++|+.|++++|.+++..+..+..+                           .+|+.|++++|.+
T Consensus       133 ~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l  212 (276)
T 2z62_A          133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQL  212 (276)
T ss_dssp             SSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCC
T ss_pred             CCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCce
Confidence            7776653 35666666777777777776664433333222                           2566777777777


Q ss_pred             cccCCCC-cccCCCCcccccCCCCCCCCC
Q 048618          134 QGPVPNS-TAFRNAPVEALEGNKELCGGV  161 (207)
Q Consensus       134 ~~~~~~~-~~~~~~~~~~~~~n~~~c~~~  161 (207)
                      +...+.. ..+..+..+++.+|+..|+.+
T Consensus       213 ~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          213 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             SCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             eecCHhHhcccccccEEEccCCcccccCC
Confidence            6555443 456677777888888887753

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.84  E-value=2.2e-20  Score=150.02  Aligned_cols=86  Identities=24%  Similarity=0.266  Sum_probs=53.8

Q ss_pred             CCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccccC
Q 048618           75 LSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEG  153 (207)
Q Consensus        75 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~  153 (207)
                      |+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++...+.. ..+..+..+++.+
T Consensus       209 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  288 (440)
T 3zyj_A          209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH  288 (440)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCS
T ss_pred             cCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCC
Confidence            333333344444334445555555666666666665555566667777777777777777655544 4567778888889


Q ss_pred             CCCCCCC
Q 048618          154 NKELCGG  160 (207)
Q Consensus       154 n~~~c~~  160 (207)
                      |+..|++
T Consensus       289 Np~~CdC  295 (440)
T 3zyj_A          289 NPWNCNC  295 (440)
T ss_dssp             SCEECSS
T ss_pred             CCccCCC
Confidence            9888865

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.84  E-value=1.9e-20  Score=144.95  Aligned_cols=153  Identities=26%  Similarity=0.328  Sum_probs=105.6

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcC---------CCCCCeeeccCCcCCCccchhhhCC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGS---------LLKLHYLSLSNNQFVQELPKELEKL   72 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~---------l~~L~~L~l~~n~l~~~~~~~~~~l   72 (207)
                      +|+.|++++|.++ .+|..+.++++|++|++++|++.+.+|..+..         +++|+.|++++|.+. .+|..+..+
T Consensus       128 ~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l  205 (328)
T 4fcg_A          128 GLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANL  205 (328)
T ss_dssp             TCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGC
T ss_pred             CCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCC
Confidence            5677777777777 56767777777777777777666666665543         777777777777776 556667777


Q ss_pred             CCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccc
Q 048618           73 VQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEAL  151 (207)
Q Consensus        73 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~  151 (207)
                      ++|++|++++|.+++ .|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|.. ..++.+..+++
T Consensus       206 ~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L  284 (328)
T 4fcg_A          206 QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL  284 (328)
T ss_dssp             TTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEEC
T ss_pred             CCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeC
Confidence            777777777777764 4445667777777777777777677777777777777777777776666644 45566666666


Q ss_pred             cCCCCC
Q 048618          152 EGNKEL  157 (207)
Q Consensus       152 ~~n~~~  157 (207)
                      .+|...
T Consensus       285 ~~n~~~  290 (328)
T 4fcg_A          285 RGCVNL  290 (328)
T ss_dssp             TTCTTC
T ss_pred             CCCCch
Confidence            666543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.84  E-value=4.8e-20  Score=139.29  Aligned_cols=137  Identities=26%  Similarity=0.258  Sum_probs=125.7

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      ++++|++++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+.++++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            68999999999998888899999999999999999998777789999999999999999998888899999999999999


Q ss_pred             CCCCCCchhHHhhcCCCCCEEeCCCCcCCCC-ccccccCCCCCCEEECCCCcCcccCC
Q 048618           82 HNFLGGELLSQICNMESLEKLNLSHNNLSGS-IPNCFEGMHGLSVIDISDNQLQGPVP  138 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~l~l~~n~~~~~~~  138 (207)
                      +|.+.+..+..+..+++|++|++++|.+++. .|..+..+++|+.|++++|.+++..+
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~  166 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  166 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence            9999877666788999999999999999874 58899999999999999999986544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.84  E-value=1.2e-20  Score=157.25  Aligned_cols=165  Identities=21%  Similarity=0.256  Sum_probs=126.2

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCC-CCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFN-NSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      +++.+++++|.+.+..+..+..++.++.|++++|.+. ...|..|..+++|+.|++++|++.+..|..|.++++|++|++
T Consensus       446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L  525 (635)
T 4g8a_A          446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM  525 (635)
T ss_dssp             TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence            5677888888888888888888888888888888643 356677888888888999888888888888888888889999


Q ss_pred             CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCC-CCCCEEECCCCcCcccCCCCc---ccCCCCcccccCCCC
Q 048618           81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM-HGLSVIDISDNQLQGPVPNST---AFRNAPVEALEGNKE  156 (207)
Q Consensus        81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~l~l~~n~~~~~~~~~~---~~~~~~~~~~~~n~~  156 (207)
                      ++|++++..+..+..+++|+.|++++|.+++..|+.+..+ ++|+.|++++|++.|.|....   +++............
T Consensus       526 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~  605 (635)
T 4g8a_A          526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERM  605 (635)
T ss_dssp             TTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGC
T ss_pred             CCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCc
Confidence            8888887777888888888999998888888888888877 578888999998888876532   222222222223445


Q ss_pred             CCCCCCCCCC
Q 048618          157 LCGGVKGMQP  166 (207)
Q Consensus       157 ~c~~~~~~~~  166 (207)
                      .|..|....+
T Consensus       606 ~C~~P~~~~g  615 (635)
T 4g8a_A          606 ECATPSDKQG  615 (635)
T ss_dssp             BBCSSTTTTT
T ss_pred             eeCCchHHCC
Confidence            6776655443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=3e-19  Score=129.52  Aligned_cols=154  Identities=23%  Similarity=0.235  Sum_probs=134.0

Q ss_pred             cEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCC
Q 048618            4 TKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHN   83 (207)
Q Consensus         4 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   83 (207)
                      +.++.+++.++ .+|..+  .+++++|++++|.+.+..+..|..+++|+.|++++|++.+..+..|..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            46788888887 455544  468999999999999877778899999999999999999877778899999999999999


Q ss_pred             CCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccccCCCCCCCC
Q 048618           84 FLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGNKELCGG  160 (207)
Q Consensus        84 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~n~~~c~~  160 (207)
                      .+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+.. ..+..+..+++.+|+..|..
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  164 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC  164 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC
Confidence            999777777889999999999999999877788899999999999999999766653 56788899999999888764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.83  E-value=2.7e-20  Score=154.82  Aligned_cols=162  Identities=17%  Similarity=0.178  Sum_probs=136.1

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCC-CcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEe
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNN-SVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELD   79 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   79 (207)
                      ++|+.|++++|.+.+..|..+.++++|++|++++|.+.+ ..|..|..+++|+.|++++|.+.+..|..+..+++|++|+
T Consensus       424 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  503 (606)
T 3vq2_A          424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN  503 (606)
T ss_dssp             TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEE
Confidence            478999999999999999999999999999999999987 4788899999999999999999998899999999999999


Q ss_pred             cCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCC-CCCEEECCCCcCcccCCCCc---ccCCCCcccccCCC
Q 048618           80 LSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH-GLSVIDISDNQLQGPVPNST---AFRNAPVEALEGNK  155 (207)
Q Consensus        80 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~l~l~~n~~~~~~~~~~---~~~~~~~~~~~~n~  155 (207)
                      +++|++++..|..+..+++|+.|++++|.++ .+|..+..++ +|+.+++++|++.|.++...   +++...........
T Consensus       504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~~~~~~~~~~~  582 (606)
T 3vq2_A          504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQ  582 (606)
T ss_dssp             CCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTTTSSSSBSSGGG
T ss_pred             CCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccHHHHHHHHcCcccccCCcc
Confidence            9999999988999999999999999999999 5666688887 59999999999999888753   33222222223344


Q ss_pred             CCCCCCCC
Q 048618          156 ELCGGVKG  163 (207)
Q Consensus       156 ~~c~~~~~  163 (207)
                      ..|..+..
T Consensus       583 ~~C~~p~~  590 (606)
T 3vq2_A          583 MTCATPVE  590 (606)
T ss_dssp             CCCC----
T ss_pred             ceeCCChH
Confidence            55665443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.83  E-value=4.2e-20  Score=129.69  Aligned_cols=134  Identities=27%  Similarity=0.325  Sum_probs=118.2

Q ss_pred             CCccEEECCCCCCc-ccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEe
Q 048618            1 NSLTKLILRGNQLT-GRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELD   79 (207)
Q Consensus         1 ~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   79 (207)
                      ++|+.|++++|.++ +.+|..+..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+.+..|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            46899999999998 67888889999999999999999865  7788999999999999999887888888899999999


Q ss_pred             cCCCCCCCch-hHHhhcCCCCCEEeCCCCcCCCCcc---ccccCCCCCCEEECCCCcCccc
Q 048618           80 LSHNFLGGEL-LSQICNMESLEKLNLSHNNLSGSIP---NCFEGMHGLSVIDISDNQLQGP  136 (207)
Q Consensus        80 l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~l~l~~n~~~~~  136 (207)
                      +++|.+++.. +..+..+++|+.|++++|.+++..+   ..+..+++|+.|++++|.+...
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence            9999998643 3678899999999999999986655   4788999999999999987643

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.83  E-value=5.9e-20  Score=126.44  Aligned_cols=127  Identities=27%  Similarity=0.344  Sum_probs=111.7

Q ss_pred             CccEEECCCCCCc-ccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            2 SLTKLILRGNQLT-GRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         2 ~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      +++.|++++|.++ +.+|..+..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+.+..|..+..+++|++|++
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            6899999999998 77888889999999999999999866  67889999999999999998878888888999999999


Q ss_pred             CCCCCCCc-hhHHhhcCCCCCEEeCCCCcCCCCcc---ccccCCCCCCEEECCC
Q 048618           81 SHNFLGGE-LLSQICNMESLEKLNLSHNNLSGSIP---NCFEGMHGLSVIDISD  130 (207)
Q Consensus        81 ~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~l~l~~  130 (207)
                      ++|.+++. .+..+..+++|+.|++++|.+++..+   ..+..+++|+.|++++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999864 34778899999999999999987655   5788899999998863

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.83  E-value=9.1e-20  Score=146.89  Aligned_cols=151  Identities=22%  Similarity=0.226  Sum_probs=106.6

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +++.|+|++|.+++..+..|.++++|++|+|++|.+.+..+..|.++++|+.|++++|.+....+..|..+++|++|+++
T Consensus        76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  155 (452)
T 3zyi_A           76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR  155 (452)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred             CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence            67888888888888888888888888888888888887777888888888888888888887777778888888888888


Q ss_pred             CCCCCCchhHHhhcCCCCCEEeCCCC-cCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccC
Q 048618           82 HNFLGGELLSQICNMESLEKLNLSHN-NLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEG  153 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~  153 (207)
                      +|.+....+..+..+++|+.|++++| .+....+..+..+++|+.|++++|.++.. |....+..+..+++.+
T Consensus       156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~  227 (452)
T 3zyi_A          156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSG  227 (452)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CCCTTCTTCCEEECTT
T ss_pred             CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-ccccccccccEEECcC
Confidence            88887655556666666677766663 33333334455556666666666655532 3333333444444333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.82  E-value=3.7e-20  Score=150.00  Aligned_cols=135  Identities=24%  Similarity=0.278  Sum_probs=101.6

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +++.|+|++|.+++..+..|.++++|++|+|++|.+.+..|..|.++++|+.|++++|.+....+..|.++++|++|+++
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  112 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS  112 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence            56778888888887777778888888888888888777667777778888888888887776666667777778888888


Q ss_pred             CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCccc
Q 048618           82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGP  136 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~  136 (207)
                      +|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.++..
T Consensus       113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  167 (477)
T 2id5_A          113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI  167 (477)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred             CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence            8777766666777777777777777777766666677777777777777766543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.82  E-value=1.9e-19  Score=147.31  Aligned_cols=157  Identities=22%  Similarity=0.277  Sum_probs=130.7

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCC--CcchhhcCCCCCCeeeccCCcCCCccch-hhhCCCCCCE
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNN--SVPKSLGSLLKLHYLSLSNNQFVQELPK-ELEKLVQLSE   77 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~   77 (207)
                      ++|+.|++++|.+++..|..+.++++|++|++++|.+.+  ..|..+..+++|+.|++++|.+.+..|. .+..+++|++
T Consensus       324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~  403 (520)
T 2z7x_B          324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS  403 (520)
T ss_dssp             CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred             CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence            368899999999998888899999999999999999986  4557788999999999999999874554 4778889999


Q ss_pred             EecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCC-CcccCCCCcccccCCCC
Q 048618           78 LDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPN-STAFRNAPVEALEGNKE  156 (207)
Q Consensus        78 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~-~~~~~~~~~~~~~~n~~  156 (207)
                      |++++|.+++..+..+.  ++|+.|++++|.++ .+|..+..+++|+.|++++|+++...+. ...++.+..+++.+|+.
T Consensus       404 L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~  480 (520)
T 2z7x_B          404 LNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW  480 (520)
T ss_dssp             EECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             EECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCC
Confidence            99999998876665443  68999999999998 6677777999999999999999855444 35677888899999999


Q ss_pred             CCCC
Q 048618          157 LCGG  160 (207)
Q Consensus       157 ~c~~  160 (207)
                      .|.+
T Consensus       481 ~c~c  484 (520)
T 2z7x_B          481 DCSC  484 (520)
T ss_dssp             CCCH
T ss_pred             cccC
Confidence            8874

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.82  E-value=2.1e-19  Score=144.35  Aligned_cols=152  Identities=25%  Similarity=0.270  Sum_probs=99.7

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +++.|+|++|.++...+..|.++++|++|+|++|.+.+..+..|.++++|+.|++++|++....+..|..+++|++|+++
T Consensus        65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  144 (440)
T 3zyj_A           65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR  144 (440)
T ss_dssp             TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred             CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence            56778888888887777778888888888888888877777778888888888888888776666677777788888888


Q ss_pred             CCCCCCchhHHhhcCCCCCEEeCCCC-cCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCC
Q 048618           82 HNFLGGELLSQICNMESLEKLNLSHN-NLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGN  154 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n  154 (207)
                      +|.+....+..+..+++|+.|++++| .+....+..+..+++|+.|++++|.++. +|....+..+..+++.+|
T Consensus       145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~N  217 (440)
T 3zyj_A          145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IPNLTPLIKLDELDLSGN  217 (440)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CCCCTTCSSCCEEECTTS
T ss_pred             CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-ccccCCCcccCEEECCCC
Confidence            88777555555666666666666663 3332233345555555555555555542 233333333444444333

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.82  E-value=2.3e-19  Score=127.00  Aligned_cols=135  Identities=25%  Similarity=0.266  Sum_probs=119.3

Q ss_pred             ccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCC
Q 048618            3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSH   82 (207)
Q Consensus         3 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   82 (207)
                      .+.++++++.++ .+|..+  .++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            367899999998 455544  37999999999999987777889999999999999999988788889999999999999


Q ss_pred             CCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC
Q 048618           83 NFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS  140 (207)
Q Consensus        83 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~  140 (207)
                      |.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|++.|.++..
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l  143 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  143 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCccH
Confidence            9999877777889999999999999999777777889999999999999999887743

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.82  E-value=2.5e-20  Score=146.15  Aligned_cols=138  Identities=25%  Similarity=0.258  Sum_probs=123.3

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      ++|+.|+|++|.|++..+.+|.++++|++|+|++|.+....+..|..+++|+.|++++|.+....+..|..+++|+.|++
T Consensus        64 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L  143 (361)
T 2xot_A           64 TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL  143 (361)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEEC
Confidence            47899999999999888889999999999999999999877888999999999999999999888999999999999999


Q ss_pred             CCCCCCCchhHHh---hcCCCCCEEeCCCCcCCCCccccccCCCC--CCEEECCCCcCcccCC
Q 048618           81 SHNFLGGELLSQI---CNMESLEKLNLSHNNLSGSIPNCFEGMHG--LSVIDISDNQLQGPVP  138 (207)
Q Consensus        81 ~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~~~~--L~~l~l~~n~~~~~~~  138 (207)
                      ++|.+++..+..+   ..+++|+.|+|++|.++...+..+..++.  ++.+++++|++.|.+.
T Consensus       144 ~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~  206 (361)
T 2xot_A          144 SQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK  206 (361)
T ss_dssp             CSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred             CCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence            9999997655555   56899999999999999777778888876  4889999999988764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.82  E-value=9.8e-20  Score=147.53  Aligned_cols=154  Identities=23%  Similarity=0.245  Sum_probs=128.2

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      ++|+.|+|++|.+++..|.+|.++++|++|+|++|.+....+..|.++++|+.|++++|.+.+..+..|..+++|++|++
T Consensus        56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l  135 (477)
T 2id5_A           56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV  135 (477)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEE
T ss_pred             CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEEC
Confidence            47899999999999888999999999999999999998777777889999999999999998888888999999999999


Q ss_pred             CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccccCC
Q 048618           81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGN  154 (207)
Q Consensus        81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~n  154 (207)
                      ++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+....+.. ..+..+..+++.++
T Consensus       136 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~  210 (477)
T 2id5_A          136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW  210 (477)
T ss_dssp             CCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECC
T ss_pred             CCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCC
Confidence            999998777778888899999999999988777777888888888888888887655432 33444444444443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.82  E-value=5.8e-20  Score=141.32  Aligned_cols=156  Identities=22%  Similarity=0.223  Sum_probs=121.7

Q ss_pred             CCccEEECCCCCCcccCCccc--CCCCCCCEeeCcCCCCCCCcchhhcCC-----CCCCeeeccCCcCCCccchhhhCCC
Q 048618            1 NSLTKLILRGNQLTGRLPTEI--GSFKELEYLDLSANRFNNSVPKSLGSL-----LKLHYLSLSNNQFVQELPKELEKLV   73 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~   73 (207)
                      ++|++|++++|.+++..|..+  ..+++|++|++++|.+++. |..+..+     ++|+.|++++|++.+..++.+..++
T Consensus        95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~  173 (312)
T 1wwl_A           95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP  173 (312)
T ss_dssp             SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred             CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence            368899999999988888876  8899999999999999876 7777766     8899999999998888878888889


Q ss_pred             CCCEEecCCCCCCCc--hhHHh--hcCCCCCEEeCCCCcCCCC---ccccccCCCCCCEEECCCCcCcccCCC--CcccC
Q 048618           74 QLSELDLSHNFLGGE--LLSQI--CNMESLEKLNLSHNNLSGS---IPNCFEGMHGLSVIDISDNQLQGPVPN--STAFR  144 (207)
Q Consensus        74 ~L~~L~l~~n~l~~~--~~~~~--~~l~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~l~l~~n~~~~~~~~--~~~~~  144 (207)
                      +|++|++++|++.+.  .+..+  ..+++|+.|++++|.+++.   ....+..+++|+.|++++|.+++..|.  ...+.
T Consensus       174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~  253 (312)
T 1wwl_A          174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS  253 (312)
T ss_dssp             SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred             CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence            999999999987654  23444  6788889999999888732   223445778888888888888876532  24457


Q ss_pred             CCCcccccCCCCC
Q 048618          145 NAPVEALEGNKEL  157 (207)
Q Consensus       145 ~~~~~~~~~n~~~  157 (207)
                      .+..+++.+|...
T Consensus       254 ~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          254 QLNSLNLSFTGLK  266 (312)
T ss_dssp             TCCEEECTTSCCS
T ss_pred             CCCEEECCCCccC
Confidence            7777777777644

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.82  E-value=9.5e-20  Score=151.56  Aligned_cols=158  Identities=22%  Similarity=0.260  Sum_probs=97.7

Q ss_pred             CccEEECCCCCCcccCCcc-cCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCc---cchhhhCCCCCCE
Q 048618            2 SLTKLILRGNQLTGRLPTE-IGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQE---LPKELEKLVQLSE   77 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~   77 (207)
                      +|+.|++++|.+.+..+.. +..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.   .+..+..+++|+.
T Consensus       401 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~  480 (606)
T 3t6q_A          401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI  480 (606)
T ss_dssp             TCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCE
T ss_pred             cCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccE
Confidence            4555555555555443332 55555666666666665555555566666666666666665542   2234566666666


Q ss_pred             EecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccccCCCC
Q 048618           78 LDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGNKE  156 (207)
Q Consensus        78 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~n~~  156 (207)
                      |++++|.+++..|..+..+++|+.|++++|.+++..|+.+..++.| .+++++|++++..|.. ..++.+..+++.+|+.
T Consensus       481 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  559 (606)
T 3t6q_A          481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL  559 (606)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred             EECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCc
Confidence            6666666665556666666777777777777766666666666667 7777777776555543 4456677777788887


Q ss_pred             CCCC
Q 048618          157 LCGG  160 (207)
Q Consensus       157 ~c~~  160 (207)
                      .|.+
T Consensus       560 ~c~c  563 (606)
T 3t6q_A          560 DCTC  563 (606)
T ss_dssp             ECSG
T ss_pred             cccC
Confidence            7764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.81  E-value=2.4e-19  Score=150.98  Aligned_cols=160  Identities=26%  Similarity=0.289  Sum_probs=112.0

Q ss_pred             CccEEECCCCCCc--ccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccc--------hhhhC
Q 048618            2 SLTKLILRGNQLT--GRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELP--------KELEK   71 (207)
Q Consensus         2 ~L~~L~l~~n~i~--~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~   71 (207)
                      +|+.|++++|.+.  +..|..+.++++|++|++++|.+++..+..|.++++|+.|++++|.+.+..+        ..+..
T Consensus       455 ~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~  534 (680)
T 1ziw_A          455 SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG  534 (680)
T ss_dssp             TCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTT
T ss_pred             ccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcC
Confidence            3455555555544  3456667777777777777777776666667777777777777777765322        12566


Q ss_pred             CCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCc--ccCCCCcc
Q 048618           72 LVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNST--AFRNAPVE  149 (207)
Q Consensus        72 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~--~~~~~~~~  149 (207)
                      +++|+.|++++|.++...+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+...  .++.+..+
T Consensus       535 l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l  614 (680)
T 1ziw_A          535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL  614 (680)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEE
T ss_pred             CCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEE
Confidence            7777788888877775544567777888888888888876666667777888888888888776555432  46777788


Q ss_pred             cccCCCCCCCCC
Q 048618          150 ALEGNKELCGGV  161 (207)
Q Consensus       150 ~~~~n~~~c~~~  161 (207)
                      ++.+|+..|++.
T Consensus       615 ~l~~N~~~c~c~  626 (680)
T 1ziw_A          615 DMRFNPFDCTCE  626 (680)
T ss_dssp             ECTTCCCCBCCC
T ss_pred             EccCCCcccCCc
Confidence            888888888764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.81  E-value=5.2e-20  Score=143.82  Aligned_cols=153  Identities=23%  Similarity=0.210  Sum_probs=123.0

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +|+.|++++|.+++..+..+.++++|++|++++|.+.+..+..|.++++|+.|++++|.+.+..+..+..+++|++|+++
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  132 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL  132 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence            68899999999997777789999999999999999987778889999999999999999987777778889999999999


Q ss_pred             CCCCCCchh-HHhhcCCCCCEEeCCCC-cCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccccCC
Q 048618           82 HNFLGGELL-SQICNMESLEKLNLSHN-NLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGN  154 (207)
Q Consensus        82 ~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~n  154 (207)
                      +|.+++... ..+..+++|+.|++++| .++...+..+..+++|+.|++++|.+++..+.. ..++.+..+++.+|
T Consensus       133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  208 (353)
T 2z80_A          133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK  208 (353)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred             CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence            999885443 46778899999999988 466556678888888999999999888765543 33344444444444

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.81  E-value=4.1e-19  Score=127.84  Aligned_cols=147  Identities=19%  Similarity=0.238  Sum_probs=127.4

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +|+.|++++|.++ .+| .+..+++|++|++++|.+..  ...+..+++|+.|++++|.+.+..+..+..+++|++|+++
T Consensus        45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  120 (197)
T 4ezg_A           45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS  120 (197)
T ss_dssp             TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred             CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence            6899999999999 555 68999999999999997763  3478899999999999999988788889999999999999


Q ss_pred             CCCCCCchhHHhhcCCCCCEEeCCCCc-CCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCC
Q 048618           82 HNFLGGELLSQICNMESLEKLNLSHNN-LSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNK  155 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~  155 (207)
                      +|.+++..+..+..+++|+.|++++|. ++ ..+ .+..+++|+.|++++|+++.. +....++.+..+.+.+|.
T Consensus       121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          121 HSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             SSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-TTGGGCSSCCEEEECBC-
T ss_pred             CCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-HHhccCCCCCEEEeeCcc
Confidence            999998788899999999999999998 66 445 688999999999999999864 355667778888887776

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.81  E-value=3.9e-19  Score=146.84  Aligned_cols=157  Identities=22%  Similarity=0.237  Sum_probs=130.2

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCC--cchhhcCCCCCCeeeccCCcCCCccc-hhhhCCCCCCE
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNS--VPKSLGSLLKLHYLSLSNNQFVQELP-KELEKLVQLSE   77 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~   77 (207)
                      ++|+.|++++|.+++..|..+.++++|++|++++|.+.+.  .|..|..+++|+.|++++|.+.+..| ..+..+++|++
T Consensus       353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~  432 (562)
T 3a79_B          353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV  432 (562)
T ss_dssp             CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCE
T ss_pred             CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCE
Confidence            3688999999999988899999999999999999999863  34668899999999999999987444 45788899999


Q ss_pred             EecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCC-CcccCCCCcccccCCCC
Q 048618           78 LDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPN-STAFRNAPVEALEGNKE  156 (207)
Q Consensus        78 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~-~~~~~~~~~~~~~~n~~  156 (207)
                      |++++|.+++..+..+.  ++|+.|++++|.++ .+|..+..+++|+.|++++|+++...+. ...++.+..+++.+|+.
T Consensus       433 L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~  509 (562)
T 3a79_B          433 LNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW  509 (562)
T ss_dssp             EECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred             EECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCc
Confidence            99999999866554332  68999999999998 5666666899999999999999965544 46677888889999999


Q ss_pred             CCCC
Q 048618          157 LCGG  160 (207)
Q Consensus       157 ~c~~  160 (207)
                      .|++
T Consensus       510 ~c~c  513 (562)
T 3a79_B          510 DCTC  513 (562)
T ss_dssp             CCCH
T ss_pred             CCCc
Confidence            8864

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.81  E-value=8.5e-19  Score=138.64  Aligned_cols=107  Identities=20%  Similarity=0.144  Sum_probs=48.0

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +|+.|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+....+..|..+++|++|+++
T Consensus        70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~  149 (390)
T 3o6n_A           70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS  149 (390)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECC
Confidence            34445555555444444444444445555554444444444444444444444444444443333333444444444444


Q ss_pred             CCCCCCchhHHhhcCCCCCEEeCCCCc
Q 048618           82 HNFLGGELLSQICNMESLEKLNLSHNN  108 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~  108 (207)
                      +|.+++..+..+..+++|+.|++++|.
T Consensus       150 ~n~l~~~~~~~~~~l~~L~~L~l~~n~  176 (390)
T 3o6n_A          150 NNNLERIEDDTFQATTSLQNLQLSSNR  176 (390)
T ss_dssp             SSCCCBCCTTTTSSCTTCCEEECCSSC
T ss_pred             CCccCccChhhccCCCCCCEEECCCCc
Confidence            444443333333444444444444433

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.81  E-value=1.6e-19  Score=150.21  Aligned_cols=154  Identities=21%  Similarity=0.174  Sum_probs=127.4

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +++.|++++|.+++..|.+|.++++|++|++++|.+.+..|..|.++++|++|++++|.+.+..|..|..+++|++|+++
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  113 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI  113 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred             cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence            57899999999998888999999999999999999998888899999999999999999988888899999999999999


Q ss_pred             CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCC--cccccCCC
Q 048618           82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAP--VEALEGNK  155 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~--~~~~~~n~  155 (207)
                      +|.+++..+..+..+++|++|++++|.+++.....+..+++|+.|++++|.+++..+.. ..+..+.  .+++.+|.
T Consensus       114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~  190 (606)
T 3t6q_A          114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND  190 (606)
T ss_dssp             TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred             ccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc
Confidence            99998776777888999999999999998754444555889999999999888655432 3344444  44455543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.81  E-value=8.7e-19  Score=145.75  Aligned_cols=85  Identities=25%  Similarity=0.218  Sum_probs=39.9

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +|+.|+|++|.+++..|..|.++++|++|+|++|.+.+..+..|..+++|+.|++++|.+.+..|..+..+++|++|+++
T Consensus       100 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  179 (597)
T 3oja_B          100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS  179 (597)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECT
T ss_pred             CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECc
Confidence            34444444444444444444444444444444444443333334444455555555554444444444444444444444


Q ss_pred             CCCCC
Q 048618           82 HNFLG   86 (207)
Q Consensus        82 ~n~l~   86 (207)
                      +|.++
T Consensus       180 ~N~l~  184 (597)
T 3oja_B          180 SNRLT  184 (597)
T ss_dssp             TSCCS
T ss_pred             CCCCC
Confidence            44443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.80  E-value=5.4e-20  Score=136.23  Aligned_cols=152  Identities=16%  Similarity=0.170  Sum_probs=119.5

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCC-CCCCcchhhcCCCCCCeeeccC-CcCCCccchhhhCCCCCCEEe
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANR-FNNSVPKSLGSLLKLHYLSLSN-NQFVQELPKELEKLVQLSELD   79 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~   79 (207)
                      +++.|++++|.+++..+..|.++++|++|++++|. +....+..|..+++|+.|++++ |.+.+..+..|..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            68889999999997777788899999999999997 8766666888899999999998 888877777888889999999


Q ss_pred             cCCCCCCCchhHHhhcCCCCC---EEeCCCC-cCCCCccccccCCCCCC-EEECCCCcCcccCCCCcccCCCCcccccCC
Q 048618           80 LSHNFLGGELLSQICNMESLE---KLNLSHN-NLSGSIPNCFEGMHGLS-VIDISDNQLQGPVPNSTAFRNAPVEALEGN  154 (207)
Q Consensus        80 l~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~~~~L~-~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n  154 (207)
                      +++|.+++ .|. +..+++|+   .|++++| .+++..+..+..+++|+ .+++++|.++...+.......+..+++.+|
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n  189 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN  189 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTC
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCC
Confidence            99998875 444 67777777   8888888 78766666788888888 888888888744443333345566666666


Q ss_pred             C
Q 048618          155 K  155 (207)
Q Consensus       155 ~  155 (207)
                      .
T Consensus       190 ~  190 (239)
T 2xwt_C          190 K  190 (239)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.80  E-value=1.5e-19  Score=149.16  Aligned_cols=158  Identities=22%  Similarity=0.239  Sum_probs=88.6

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcc-hhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVP-KSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      +|+.|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+..+..+..+++|++|++
T Consensus       374 ~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  452 (570)
T 2z63_A          374 SLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM  452 (570)
T ss_dssp             CCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred             ccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEEC
Confidence            345555555555533222 5555555555555555554333 34555566666666666655555555556666666666


Q ss_pred             CCCCCC-CchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccccCCCCCC
Q 048618           81 SHNFLG-GELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGNKELC  158 (207)
Q Consensus        81 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~n~~~c  158 (207)
                      ++|.+. +..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..+.. ..++.+..+++.+|+..|
T Consensus       453 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence            666554 244555555666666666666666555555666666666666666665554432 344555566666666555


Q ss_pred             CC
Q 048618          159 GG  160 (207)
Q Consensus       159 ~~  160 (207)
                      ..
T Consensus       533 ~~  534 (570)
T 2z63_A          533 SC  534 (570)
T ss_dssp             CT
T ss_pred             CC
Confidence            43

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.80  E-value=3.8e-19  Score=140.65  Aligned_cols=136  Identities=19%  Similarity=0.233  Sum_probs=124.0

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      ++++.|++++|.++...+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..|..+..+++|++|++
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            36899999999999766667899999999999999999877889999999999999999999888889999999999999


Q ss_pred             CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCccc
Q 048618           81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGP  136 (207)
Q Consensus        81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~  136 (207)
                      ++|.++...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++..
T Consensus       125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  180 (390)
T 3o6n_A          125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV  180 (390)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred             CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence            99999966656678999999999999999988888899999999999999999764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.80  E-value=3.6e-19  Score=149.93  Aligned_cols=155  Identities=25%  Similarity=0.252  Sum_probs=132.9

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      ++++.|++++|.+++..+..|.++++|++|++++|.+.+..|..|.++++|+.|++++|.+.+..+..|..+++|++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            36899999999999877788999999999999999999888999999999999999999998777778999999999999


Q ss_pred             CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCc---ccCCCCcccccCCC
Q 048618           81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNST---AFRNAPVEALEGNK  155 (207)
Q Consensus        81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~---~~~~~~~~~~~~n~  155 (207)
                      ++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+...   ....+..+++.+|.
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~  182 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ  182 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred             CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence            9999987777888999999999999999998888888899999999999999887655431   23456666666653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.80  E-value=2.9e-19  Score=137.44  Aligned_cols=153  Identities=23%  Similarity=0.205  Sum_probs=124.4

Q ss_pred             CCccEEECCCCCCcccCCcccCCC-----CCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCc--cchhh--hC
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSF-----KELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQE--LPKEL--EK   71 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l-----~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~--~~   71 (207)
                      ++|+.|++++|.+++. |..+..+     ++|++|++++|.+.+..+..|..+++|+.|++++|++.+.  .+..+  ..
T Consensus       121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~  199 (312)
T 1wwl_A          121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK  199 (312)
T ss_dssp             CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred             CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence            4789999999999976 8878777     8999999999999988888999999999999999998664  33444  78


Q ss_pred             CCCCCEEecCCCCCCCc---hhHHhhcCCCCCEEeCCCCcCCCCcc-ccccCCCCCCEEECCCCcCcccCCCCcccCCCC
Q 048618           72 LVQLSELDLSHNFLGGE---LLSQICNMESLEKLNLSHNNLSGSIP-NCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAP  147 (207)
Q Consensus        72 l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~  147 (207)
                      +++|++|++++|.+++.   ....+..+++|+.|++++|.+++..| ..+..+++|+.|++++|.++ .+|.... ..+.
T Consensus       200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-~~L~  277 (312)
T 1wwl_A          200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-AKLS  277 (312)
T ss_dssp             CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-SEEE
T ss_pred             CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-CCce
Confidence            89999999999999842   22344578999999999999997664 45667889999999999998 4554433 6777


Q ss_pred             cccccCCCC
Q 048618          148 VEALEGNKE  156 (207)
Q Consensus       148 ~~~~~~n~~  156 (207)
                      .+++.+|..
T Consensus       278 ~L~Ls~N~l  286 (312)
T 1wwl_A          278 VLDLSYNRL  286 (312)
T ss_dssp             EEECCSSCC
T ss_pred             EEECCCCCC
Confidence            777877764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.80  E-value=1.2e-19  Score=156.34  Aligned_cols=68  Identities=25%  Similarity=0.363  Sum_probs=44.5

Q ss_pred             hhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC--------------------cccCCCCccccc
Q 048618           93 ICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS--------------------TAFRNAPVEALE  152 (207)
Q Consensus        93 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~--------------------~~~~~~~~~~~~  152 (207)
                      +..+++|+.|+|++|.+++..+..+..+++|+.|++++|.+++..+..                    ..+..+..+++.
T Consensus       476 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~  555 (844)
T 3j0a_A          476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDIT  555 (844)
T ss_dssp             SSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCCEEEEE
T ss_pred             hcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCCCCChhHhCCcCEEEec
Confidence            445566777777777777666666777777777777777666543322                    123356677788


Q ss_pred             CCCCCCCC
Q 048618          153 GNKELCGG  160 (207)
Q Consensus       153 ~n~~~c~~  160 (207)
                      +|+..|++
T Consensus       556 ~Np~~C~c  563 (844)
T 3j0a_A          556 HNKFICEC  563 (844)
T ss_dssp             EECCCCSS
T ss_pred             CCCccccc
Confidence            88888854

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.80  E-value=1.3e-19  Score=149.05  Aligned_cols=140  Identities=23%  Similarity=0.208  Sum_probs=123.9

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      ++|+.|++++|.+++..|.+|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+.++++|++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            36899999999999888899999999999999999999888889999999999999999999888888999999999999


Q ss_pred             CCCCCCCc-hhHHhhcCCCCCEEeCCCCcCCCCc-cccccCCCCCCEEECCCCcCcccCCCC
Q 048618           81 SHNFLGGE-LLSQICNMESLEKLNLSHNNLSGSI-PNCFEGMHGLSVIDISDNQLQGPVPNS  140 (207)
Q Consensus        81 ~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~  140 (207)
                      ++|.+++. .+..+..+++|++|++++|.+.+.. +..+..+++|+.|++++|.+++..|..
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  167 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS  167 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh
Confidence            99999863 4567888999999999999844444 467889999999999999998766554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.80  E-value=1.5e-19  Score=151.42  Aligned_cols=154  Identities=17%  Similarity=0.262  Sum_probs=84.9

Q ss_pred             CccEEECCCCCCccc-----------------CCcccC--CCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCc-C
Q 048618            2 SLTKLILRGNQLTGR-----------------LPTEIG--SFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ-F   61 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~-----------------~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l   61 (207)
                      +|+.|+|++|.+++.                 +|..+.  ++++|++|++++|.+.+.+|..|.++++|+.|++++|+ +
T Consensus       207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l  286 (636)
T 4eco_A          207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI  286 (636)
T ss_dssp             TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS
T ss_pred             CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC
Confidence            455555555555543                 555555  55555555555555555555555555555555555555 5


Q ss_pred             CC-ccchhhhCC------CCCCEEecCCCCCCCchhH--HhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCc
Q 048618           62 VQ-ELPKELEKL------VQLSELDLSHNFLGGELLS--QICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQ  132 (207)
Q Consensus        62 ~~-~~~~~~~~l------~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~  132 (207)
                      ++ .+|..+..+      ++|++|++++|.++ .+|.  .+..+++|+.|++++|.+++.+| .+..+++|+.|++++|.
T Consensus       287 ~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~  364 (636)
T 4eco_A          287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ  364 (636)
T ss_dssp             CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE
T ss_pred             ccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc
Confidence            54 455555443      55555555555555 4444  55555556666666665554555 55555556666666665


Q ss_pred             CcccCCCCcccCC-CCcccccCCCCC
Q 048618          133 LQGPVPNSTAFRN-APVEALEGNKEL  157 (207)
Q Consensus       133 ~~~~~~~~~~~~~-~~~~~~~~n~~~  157 (207)
                      ++........+.. +..+++.+|...
T Consensus       365 l~~lp~~l~~l~~~L~~L~Ls~N~l~  390 (636)
T 4eco_A          365 ITEIPANFCGFTEQVENLSFAHNKLK  390 (636)
T ss_dssp             EEECCTTSEEECTTCCEEECCSSCCS
T ss_pred             cccccHhhhhhcccCcEEEccCCcCc
Confidence            5522222344445 666666666533

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.80  E-value=4.4e-19  Score=146.42  Aligned_cols=138  Identities=26%  Similarity=0.264  Sum_probs=123.0

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +++.|++++|.+++..+.+|.++++|++|++++|.+.+..+..|.++++|++|++++|.+.+..++.|.++++|++|+++
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  108 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence            68899999999998888899999999999999999998778889999999999999999988888899999999999999


Q ss_pred             CCCCCCchhHHhhcCCCCCEEeCCCCcCCC-CccccccCCCCCCEEECCCCcCcccCCC
Q 048618           82 HNFLGGELLSQICNMESLEKLNLSHNNLSG-SIPNCFEGMHGLSVIDISDNQLQGPVPN  139 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~  139 (207)
                      +|.+++..+..+..+++|++|++++|.+++ ..|..+..+++|+.|++++|.++...+.
T Consensus       109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~  167 (570)
T 2z63_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  167 (570)
T ss_dssp             TSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG
T ss_pred             ccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH
Confidence            999987655568889999999999999986 3688899999999999999998866543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.79  E-value=1.1e-19  Score=152.11  Aligned_cols=152  Identities=22%  Similarity=0.345  Sum_probs=134.4

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCC-CCC-CcchhhcCC------CCCCeeeccCCcCCCccch--hhh
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANR-FNN-SVPKSLGSL------LKLHYLSLSNNQFVQELPK--ELE   70 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i~~-~~~~~~~~l------~~L~~L~l~~n~l~~~~~~--~~~   70 (207)
                      ++|+.|++++|.+.+.+|..+.++++|++|++++|. +++ .+|..+..+      ++|+.|++++|.+. .+|.  .+.
T Consensus       249 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~  327 (636)
T 4eco_A          249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ  327 (636)
T ss_dssp             TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT
T ss_pred             CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc
Confidence            478999999999999999999999999999999998 887 788888876      99999999999998 7777  899


Q ss_pred             CCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCC-CCEEECCCCcCcccCCCCcc---cCCC
Q 048618           71 KLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHG-LSVIDISDNQLQGPVPNSTA---FRNA  146 (207)
Q Consensus        71 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~l~l~~n~~~~~~~~~~~---~~~~  146 (207)
                      .+++|++|++++|.+++.+| .+..+++|+.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|....   +..+
T Consensus       328 ~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L  404 (636)
T 4eco_A          328 KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVM  404 (636)
T ss_dssp             TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCE
T ss_pred             cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCcc
Confidence            99999999999999998888 8889999999999999999 77888999999 999999999999 5555422   2356


Q ss_pred             CcccccCCCC
Q 048618          147 PVEALEGNKE  156 (207)
Q Consensus       147 ~~~~~~~n~~  156 (207)
                      ..+++.+|..
T Consensus       405 ~~L~Ls~N~l  414 (636)
T 4eco_A          405 SAIDFSYNEI  414 (636)
T ss_dssp             EEEECCSSCT
T ss_pred             CEEECcCCcC
Confidence            7777777764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.79  E-value=8.9e-19  Score=145.69  Aligned_cols=134  Identities=19%  Similarity=0.231  Sum_probs=79.4

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +++.+++++|.+....+..+.++++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..|..|..+++|++|+++
T Consensus        52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  131 (597)
T 3oja_B           52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE  131 (597)
T ss_dssp             CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence            34556666666654444445556666666666666665555556666666666666666655555555666666666666


Q ss_pred             CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcc
Q 048618           82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQG  135 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~  135 (207)
                      +|.+++..+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++
T Consensus       132 ~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          132 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred             CCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence            666654444445556666666666666665555556666666666666665554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.79  E-value=1.4e-18  Score=124.98  Aligned_cols=129  Identities=17%  Similarity=0.282  Sum_probs=112.2

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      ++|+.|++++|.++  .++.+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++
T Consensus        66 ~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L  143 (197)
T 4ezg_A           66 HNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL  143 (197)
T ss_dssp             TTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred             CCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence            47899999999776  3457899999999999999999878888999999999999999999888899999999999999


Q ss_pred             CCCC-CCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcc
Q 048618           81 SHNF-LGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQG  135 (207)
Q Consensus        81 ~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~  135 (207)
                      ++|. ++ ..+ .+..+++|+.|++++|.+++. + .+..+++|+.|++++|++.+
T Consensus       144 ~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          144 SYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred             cCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence            9998 66 444 688999999999999999854 3 68889999999999999864

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.79  E-value=5.8e-18  Score=130.99  Aligned_cols=130  Identities=27%  Similarity=0.353  Sum_probs=96.8

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +++.|++++|.+++..+..|.++++|++|++++|.+.+..|..|..+++|+.|++++|.+... |..+.  ++|++|+++
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l-~~~~~--~~L~~L~l~  129 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL-PEKMP--KTLQELRVH  129 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC-CSSCC--TTCCEEECC
T ss_pred             CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCcc-Chhhc--ccccEEECC
Confidence            678899999999977777889999999999999999887788898999999999998887643 33322  567777777


Q ss_pred             CCCCCCchhHHhhcCCCCCEEeCCCCcCCC--CccccccCCCCCCEEECCCCcCc
Q 048618           82 HNFLGGELLSQICNMESLEKLNLSHNNLSG--SIPNCFEGMHGLSVIDISDNQLQ  134 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~l~l~~n~~~  134 (207)
                      +|.+++..+..+..+++|+.|++++|.++.  ..+..+..+++|+.|++++|.++
T Consensus       130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  184 (330)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence            777776666667777777777777777653  44555666666666666666554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.79  E-value=8.4e-19  Score=151.08  Aligned_cols=156  Identities=22%  Similarity=0.297  Sum_probs=131.2

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCc-chhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEe
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSV-PKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELD   79 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   79 (207)
                      ++++.|+|++|.+++..|..|.++++|++|++++|...+.+ |..|.++++|++|++++|.+.+..|+.|.++++|++|+
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  103 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR  103 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence            46899999999999988999999999999999999655555 78899999999999999999988899999999999999


Q ss_pred             cCCCCCCCchhHH--hhcCCCCCEEeCCCCcCCCCcc-ccccCCCCCCEEECCCCcCcccCCCCc-cc--CCCCcccccC
Q 048618           80 LSHNFLGGELLSQ--ICNMESLEKLNLSHNNLSGSIP-NCFEGMHGLSVIDISDNQLQGPVPNST-AF--RNAPVEALEG  153 (207)
Q Consensus        80 l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~-~~--~~~~~~~~~~  153 (207)
                      +++|.+++..+..  +..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+++..+... .+  ..+..+.+..
T Consensus       104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~  183 (844)
T 3j0a_A          104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA  183 (844)
T ss_dssp             CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred             CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCC
Confidence            9999998755554  8899999999999999987654 678999999999999999987665442 12  4555555555


Q ss_pred             CCC
Q 048618          154 NKE  156 (207)
Q Consensus       154 n~~  156 (207)
                      |..
T Consensus       184 n~l  186 (844)
T 3j0a_A          184 NSL  186 (844)
T ss_dssp             SBS
T ss_pred             Ccc
Confidence            543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.78  E-value=2.7e-18  Score=132.86  Aligned_cols=150  Identities=19%  Similarity=0.277  Sum_probs=70.9

Q ss_pred             ccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCC--CcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNN--SVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         3 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      |+.|++++|.+++..+..+.++++|++|++++|.+..  ..+..|..+++|+.|++++|.+... |..+.  ++|++|++
T Consensus       123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~--~~L~~L~l  199 (330)
T 1xku_A          123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-PQGLP--PSLTELHL  199 (330)
T ss_dssp             CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC-CSSCC--TTCSEEEC
T ss_pred             ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC-Ccccc--ccCCEEEC
Confidence            4444444444443333344445555555555554432  3333444444444444444444321 11111  34444445


Q ss_pred             CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCC
Q 048618           81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNK  155 (207)
Q Consensus        81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~  155 (207)
                      ++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++........++.+..+++.+|.
T Consensus       200 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~  274 (330)
T 1xku_A          200 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN  274 (330)
T ss_dssp             TTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC
T ss_pred             CCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCc
Confidence            555554444455555555566666555555444445555555566666655555332333444445555555443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.78  E-value=2.5e-19  Score=139.93  Aligned_cols=159  Identities=23%  Similarity=0.238  Sum_probs=94.9

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcc-hhhcCCCCCCeeeccCCc-CCCccchhhhCCCCCCEEe
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVP-KSLGSLLKLHYLSLSNNQ-FVQELPKELEKLVQLSELD   79 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~   79 (207)
                      +|++|++++|.+++..+..+.++++|++|++++|.+....+ ..|..+++|+.|++++|+ +....+..+..+++|++|+
T Consensus       101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  180 (353)
T 2z80_A          101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE  180 (353)
T ss_dssp             TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred             CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence            46666666666664444446666666666666666653333 345556666666666652 3333344444455555555


Q ss_pred             cCCCCCCCchhHHhh------------------------cCCCCCEEeCCCCcCCCC-----------------------
Q 048618           80 LSHNFLGGELLSQIC------------------------NMESLEKLNLSHNNLSGS-----------------------  112 (207)
Q Consensus        80 l~~n~l~~~~~~~~~------------------------~l~~L~~L~l~~n~l~~~-----------------------  112 (207)
                      +++|.+.+..+..+.                        .+++|+.|++++|.+++.                       
T Consensus       181 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~  260 (353)
T 2z80_A          181 IDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK  260 (353)
T ss_dssp             EEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB
T ss_pred             CCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccc
Confidence            555544443333333                        355666666666666542                       


Q ss_pred             --------ccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccccCCCCCCCC
Q 048618          113 --------IPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGNKELCGG  160 (207)
Q Consensus       113 --------~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~n~~~c~~  160 (207)
                              +|+.+..+++|+.|++++|+++...+.. ..++.+..+++.+|+..|..
T Consensus       261 l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          261 ITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             CCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             ccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence                    2334566788888889888888544443 56778888888888888864

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.78  E-value=3.6e-18  Score=132.30  Aligned_cols=135  Identities=21%  Similarity=0.309  Sum_probs=73.4

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCC--CcchhhcCC--------------------CCCCeeeccCC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNN--SVPKSLGSL--------------------LKLHYLSLSNN   59 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l--------------------~~L~~L~l~~n   59 (207)
                      +|++|++++|.++...+..+.++++|++|++++|.+..  ..+..+..+                    ++|+.|++++|
T Consensus       124 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n  203 (332)
T 2ft3_A          124 SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHN  203 (332)
T ss_dssp             TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSS
T ss_pred             cCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCC
Confidence            45556666666655444556666666666666665532  333333332                    23444444444


Q ss_pred             cCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccC
Q 048618           60 QFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPV  137 (207)
Q Consensus        60 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~  137 (207)
                      .+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|+++...
T Consensus       204 ~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~  280 (332)
T 2ft3_A          204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVG  280 (332)
T ss_dssp             CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCC
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccC
Confidence            444444445555556666666666665554445555566666666666665 44555555666666666666655443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.78  E-value=6.1e-19  Score=143.34  Aligned_cols=153  Identities=23%  Similarity=0.206  Sum_probs=116.9

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhh-CCCCCCEEec
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELE-KLVQLSELDL   80 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l   80 (207)
                      +|+.|++++|.+++..+.   .+++|+.|++++|.+++..|..|..+++|+.|++++|.+.+..|..+. .+++|+.|++
T Consensus       100 ~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L  176 (487)
T 3oja_A          100 SIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL  176 (487)
T ss_dssp             TCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred             CcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence            566777777777655443   357788888888888877777888888888888888888887777765 6888888888


Q ss_pred             CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCCCCCC
Q 048618           81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGG  160 (207)
Q Consensus        81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~~c~~  160 (207)
                      ++|.+++..  ....+++|+.|++++|.+++..+ .+..+++|+.|++++|.+++..+....++.+..+++.+|+..|+.
T Consensus       177 s~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~  253 (487)
T 3oja_A          177 QYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT  253 (487)
T ss_dssp             TTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred             CCCcccccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcc
Confidence            888887552  23357888888888888885444 477888888899988888875555566677888888888887653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.78  E-value=6.7e-19  Score=126.26  Aligned_cols=156  Identities=21%  Similarity=0.274  Sum_probs=122.8

Q ss_pred             CccEEECCCCCCcccCCc-ccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            2 SLTKLILRGNQLTGRLPT-EIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      +++.|++++|.+++..+. .+..+++|++|++++|.+++..|..|..+++|+.|++++|.+.+..+..|..+++|++|++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            689999999999977664 5899999999999999999988999999999999999999999988888999999999999


Q ss_pred             CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccc-cccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCCCCC
Q 048618           81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPN-CFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCG  159 (207)
Q Consensus        81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~~c~  159 (207)
                      ++|++++..|..+..+++|+.|++++|.+++..+. .+..  .++...+.++...|..|.  .++.....++..+...|.
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~--~l~~~~~~~~~~~C~~P~--~l~~~~l~~l~~~~~~C~  185 (192)
T 1w8a_A          110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSLNGGAARCGAPS--KVRDVQIKDLPHSEFKCS  185 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCCSGGGCBBCSST--TTTTSBGGGSCTTTCCCC
T ss_pred             CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHH--HHHHcCCCCCCCCCCCCh--HHcCCChhhCcHhhcCcC
Confidence            99999988899999999999999999999875442 1111  112223344455554443  333344445556666676


Q ss_pred             CC
Q 048618          160 GV  161 (207)
Q Consensus       160 ~~  161 (207)
                      +.
T Consensus       186 ~~  187 (192)
T 1w8a_A          186 SE  187 (192)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.78  E-value=1.3e-18  Score=133.66  Aligned_cols=153  Identities=20%  Similarity=0.147  Sum_probs=107.1

Q ss_pred             CccEEECCCCCCcccCC----cccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCc--cc--hhhhCCC
Q 048618            2 SLTKLILRGNQLTGRLP----TEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQE--LP--KELEKLV   73 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~--~~~~~l~   73 (207)
                      +|+.|++++|.+++..+    ..+..+++|++|++++|.+.+..+..|..+++|+.|++++|++.+.  .+  ..+..++
T Consensus       118 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~  197 (310)
T 4glp_A          118 ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFP  197 (310)
T ss_dssp             CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSC
T ss_pred             CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCC
Confidence            57788888888876544    3445678888888888888777777788888888888888876542  11  1235677


Q ss_pred             CCCEEecCCCCCCCchhH----HhhcCCCCCEEeCCCCcCCCCccccccCC---CCCCEEECCCCcCcccCCCCcccCCC
Q 048618           74 QLSELDLSHNFLGGELLS----QICNMESLEKLNLSHNNLSGSIPNCFEGM---HGLSVIDISDNQLQGPVPNSTAFRNA  146 (207)
Q Consensus        74 ~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~---~~L~~l~l~~n~~~~~~~~~~~~~~~  146 (207)
                      +|++|++++|.++.. +.    .+..+++|++|++++|.+++..|..+..+   ++|+.|++++|.++. +|... .+.+
T Consensus       198 ~L~~L~Ls~N~l~~l-~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~-~~~L  274 (310)
T 4glp_A          198 AIQNLALRNTGMETP-TGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGL-PAKL  274 (310)
T ss_dssp             CCCSCBCCSSCCCCH-HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-CCSCC-CSCC
T ss_pred             CCCEEECCCCCCCch-HHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc-hhhhh-cCCC
Confidence            888888888888632 22    24567888888888888887666666655   578888888888873 34332 2667


Q ss_pred             CcccccCCCCC
Q 048618          147 PVEALEGNKEL  157 (207)
Q Consensus       147 ~~~~~~~n~~~  157 (207)
                      ..+++..|...
T Consensus       275 ~~L~Ls~N~l~  285 (310)
T 4glp_A          275 RVLDLSSNRLN  285 (310)
T ss_dssp             SCEECCSCCCC
T ss_pred             CEEECCCCcCC
Confidence            77777777543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.78  E-value=9.6e-19  Score=129.50  Aligned_cols=154  Identities=13%  Similarity=0.228  Sum_probs=128.4

Q ss_pred             CCccEEECCCCC-CcccCCcccCCCCCCCEeeCcC-CCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCC--
Q 048618            1 NSLTKLILRGNQ-LTGRLPTEIGSFKELEYLDLSA-NRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLS--   76 (207)
Q Consensus         1 ~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~--   76 (207)
                      ++|+.|++++|. ++...+.+|.++++|++|++++ |.+.+..+..|.++++|+.|++++|.+.+ +|. +..+++|+  
T Consensus        55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L  132 (239)
T 2xwt_C           55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIF  132 (239)
T ss_dssp             TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSE
T ss_pred             CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccc
Confidence            478999999997 8877777999999999999998 99997777889999999999999999976 555 88888888  


Q ss_pred             -EEecCCC-CCCCchhHHhhcCCCCC-EEeCCCCcCCCCccccccCCCCCCEEECCCCc-CcccCCCC-ccc-CCCCccc
Q 048618           77 -ELDLSHN-FLGGELLSQICNMESLE-KLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQ-LQGPVPNS-TAF-RNAPVEA  150 (207)
Q Consensus        77 -~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~-~~~-~~~~~~~  150 (207)
                       +|++++| .+++..+..+..+++|+ .|++++|.++...+..+.. ++|+.|++++|+ ++...+.. ..+ ..+..++
T Consensus       133 ~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~  211 (239)
T 2xwt_C          133 FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD  211 (239)
T ss_dssp             EEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEE
T ss_pred             cEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEE
Confidence             9999999 89877777788999999 9999999998444445555 789999999995 88665554 345 6788888


Q ss_pred             ccCCCCC
Q 048618          151 LEGNKEL  157 (207)
Q Consensus       151 ~~~n~~~  157 (207)
                      +.+|...
T Consensus       212 l~~N~l~  218 (239)
T 2xwt_C          212 VSQTSVT  218 (239)
T ss_dssp             CTTCCCC
T ss_pred             CCCCccc
Confidence            8887654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.77  E-value=1.2e-18  Score=149.62  Aligned_cols=154  Identities=19%  Similarity=0.242  Sum_probs=127.2

Q ss_pred             CCccEEECCCCCCccc-----------------CCcccC--CCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCc-
Q 048618            1 NSLTKLILRGNQLTGR-----------------LPTEIG--SFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ-   60 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~-----------------~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-   60 (207)
                      ++|+.|+|++|.++++                 +|..+.  ++++|++|+|++|.+.+.+|..|.++++|+.|++++|+ 
T Consensus       448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~  527 (876)
T 4ecn_A          448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG  527 (876)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred             CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence            4789999999999973                 888877  99999999999999988999999999999999999998 


Q ss_pred             CCC-ccchhhhCCC-------CCCEEecCCCCCCCchhH--HhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCC
Q 048618           61 FVQ-ELPKELEKLV-------QLSELDLSHNFLGGELLS--QICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISD  130 (207)
Q Consensus        61 l~~-~~~~~~~~l~-------~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~  130 (207)
                      +++ .+|..+..++       +|++|++++|.++ .+|.  .+..+++|+.|++++|.++ .+| .+..+++|+.|++++
T Consensus       528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~  604 (876)
T 4ecn_A          528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDY  604 (876)
T ss_dssp             SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCS
T ss_pred             cccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcC
Confidence            877 6777666554       8999999999998 6776  8889999999999999988 666 788888899999999


Q ss_pred             CcCcccCCCCcccCC-CCcccccCCCCC
Q 048618          131 NQLQGPVPNSTAFRN-APVEALEGNKEL  157 (207)
Q Consensus       131 n~~~~~~~~~~~~~~-~~~~~~~~n~~~  157 (207)
                      |.++...+....+.. +..+++.+|...
T Consensus       605 N~l~~lp~~l~~l~~~L~~L~Ls~N~L~  632 (876)
T 4ecn_A          605 NQIEEIPEDFCAFTDQVEGLGFSHNKLK  632 (876)
T ss_dssp             SCCSCCCTTSCEECTTCCEEECCSSCCC
T ss_pred             CccccchHHHhhccccCCEEECcCCCCC
Confidence            988833333455566 777777777543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=8.7e-18  Score=127.96  Aligned_cols=144  Identities=30%  Similarity=0.431  Sum_probs=91.7

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +|+.|++++|.+++..+  +.++++|++|++++|.+.+ ++ .+..+++|+.|++++|.+.+.  ..+..+++|+.|+++
T Consensus        69 ~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~  142 (291)
T 1h6t_A           69 NVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLG  142 (291)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECC
T ss_pred             CCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEcc
Confidence            56666666666664333  6666666666666666653 22 366666777777777766543  345666777777777


Q ss_pred             CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCC
Q 048618           82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKE  156 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~  156 (207)
                      +|.+++.  ..+..+++|+.|++++|.+++..+  +..+++|+.|++++|.++.. +....++.+..+++.+|+.
T Consensus       143 ~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~~l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          143 NNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             SSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEEEEEEEE
T ss_pred             CCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-hhhccCCCCCEEECcCCcc
Confidence            7777643  456667777777777777765443  66777777777777777653 3345556666666666543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.77  E-value=1.7e-17  Score=127.29  Aligned_cols=83  Identities=19%  Similarity=0.283  Sum_probs=35.8

Q ss_pred             hhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCc
Q 048618           69 LEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPV  148 (207)
Q Consensus        69 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~  148 (207)
                      +..+++|++|++++|.+++..+  +..+++|+.|++++|.+++..+  +..+++|+.|++++|++++..+ ...++.+..
T Consensus       147 l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~  221 (308)
T 1h6u_A          147 LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFI  221 (308)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCE
T ss_pred             ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCE
Confidence            3344444444444444433221  3444444444444444443222  4444455555555555543332 233444444


Q ss_pred             ccccCCCC
Q 048618          149 EALEGNKE  156 (207)
Q Consensus       149 ~~~~~n~~  156 (207)
                      +.+.+|+.
T Consensus       222 L~l~~N~i  229 (308)
T 1h6u_A          222 VTLTNQTI  229 (308)
T ss_dssp             EEEEEEEE
T ss_pred             EEccCCee
Confidence            44444443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.77  E-value=1.1e-17  Score=129.63  Aligned_cols=130  Identities=25%  Similarity=0.364  Sum_probs=89.7

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +++.|++++|.+++..+..|.++++|++|++++|.+.+..|..|..+++|+.|++++|.+... |..+.  ++|++|+++
T Consensus        55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~--~~L~~L~l~  131 (332)
T 2ft3_A           55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI-PPNLP--SSLVELRIH  131 (332)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSC-CSSCC--TTCCEEECC
T ss_pred             CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCcc-Ccccc--ccCCEEECC
Confidence            567778888877766677777788888888888877766677777777888888887777643 33322  577777777


Q ss_pred             CCCCCCchhHHhhcCCCCCEEeCCCCcCCC--CccccccCCCCCCEEECCCCcCcc
Q 048618           82 HNFLGGELLSQICNMESLEKLNLSHNNLSG--SIPNCFEGMHGLSVIDISDNQLQG  135 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~l~l~~n~~~~  135 (207)
                      +|.+.+..+..+..+++|+.|++++|.++.  ..+..+..+ +|+.+++++|.++.
T Consensus       132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred             CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence            777776655667777777777777777753  445555555 55555555555543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.77  E-value=1.2e-17  Score=128.24  Aligned_cols=146  Identities=23%  Similarity=0.345  Sum_probs=115.6

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      ++|+.|++++|.+++..+  +..+++|++|++++|.+.+. + .+..+++|+.|++++|.+.+..  .+..+++|++|++
T Consensus        63 ~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l  136 (308)
T 1h6u_A           63 NNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYL  136 (308)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEEC
T ss_pred             CCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEEC
Confidence            468889999999885444  88899999999999998754 3 6888899999999999887643  3788889999999


Q ss_pred             CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCCC
Q 048618           81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKEL  157 (207)
Q Consensus        81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~~  157 (207)
                      ++|.+++..+  +..+++|+.|++++|.+++..+  +..+++|+.|++++|.+++..+ ...++.+..+++.+|...
T Consensus       137 ~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~  208 (308)
T 1h6u_A          137 DLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQIS  208 (308)
T ss_dssp             CSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCC
T ss_pred             CCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccC
Confidence            9998886543  7788899999999998885443  7888899999999998876544 556677777777777543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.77  E-value=1.7e-18  Score=133.33  Aligned_cols=152  Identities=22%  Similarity=0.197  Sum_probs=106.2

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhh-hCCCCCCEEec
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKEL-EKLVQLSELDL   80 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l   80 (207)
                      +|+.|++++|.+++..+.   .+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+ ..+++|++|++
T Consensus       100 ~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L  176 (317)
T 3o53_A          100 SIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL  176 (317)
T ss_dssp             TCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred             CcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEEC
Confidence            466666666666654433   25667788888888877666677777888888888888777666655 36778888888


Q ss_pred             CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCCCCC
Q 048618           81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCG  159 (207)
Q Consensus        81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~~c~  159 (207)
                      ++|.+++. + ....+++|+.|++++|.+++. +..+..+++|+.|++++|+++...+....++.+..+++.+|+..|+
T Consensus       177 ~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~  252 (317)
T 3o53_A          177 QYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG  252 (317)
T ss_dssp             TTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHH
T ss_pred             CCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCc
Confidence            88887644 2 223467788888888888744 4447777888888888888876544445667777777777777754

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.77  E-value=1.1e-17  Score=125.55  Aligned_cols=147  Identities=23%  Similarity=0.298  Sum_probs=119.5

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      ++|+.|++++|.++. ++ .+..+++|++|++++|.+++..+  +..+++|+.|++++|.+.+. +.. .. ++|++|++
T Consensus        41 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l-~~~-~~-~~L~~L~L  113 (263)
T 1xeu_A           41 SGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNL-NGI-PS-ACLSRLFL  113 (263)
T ss_dssp             TTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCC-TTC-CC-SSCCEEEC
T ss_pred             CcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCc-Ccc-cc-CcccEEEc
Confidence            468999999999984 45 68899999999999999986554  88999999999999998764 322 22 78999999


Q ss_pred             CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCCCCC
Q 048618           81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCG  159 (207)
Q Consensus        81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~~c~  159 (207)
                      ++|.+++.  +.+..+++|+.|++++|.+++. + .+..+++|+.|++++|++++. +....++.+..+++.+|+..+.
T Consensus       114 ~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          114 DNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred             cCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCC
Confidence            99999864  3578899999999999999865 3 688899999999999999876 5556677778888877765554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.76  E-value=1.4e-18  Score=149.17  Aligned_cols=139  Identities=19%  Similarity=0.263  Sum_probs=124.5

Q ss_pred             CCcccCCCCCCCEeeCcCCCCCC-----------------Ccchhhc--CCCCCCeeeccCCcCCCccchhhhCCCCCCE
Q 048618           17 LPTEIGSFKELEYLDLSANRFNN-----------------SVPKSLG--SLLKLHYLSLSNNQFVQELPKELEKLVQLSE   77 (207)
Q Consensus        17 ~~~~~~~l~~L~~L~L~~n~i~~-----------------~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   77 (207)
                      +|..+.++++|++|+|++|.+++                 .+|..+.  ++++|+.|++++|.+.+.+|..+.++++|+.
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            78889999999999999999997                 2788877  9999999999999999999999999999999


Q ss_pred             EecCCCC-CCC-chhHHhhcCC-------CCCEEeCCCCcCCCCccc--cccCCCCCCEEECCCCcCcccCCCCcccCCC
Q 048618           78 LDLSHNF-LGG-ELLSQICNME-------SLEKLNLSHNNLSGSIPN--CFEGMHGLSVIDISDNQLQGPVPNSTAFRNA  146 (207)
Q Consensus        78 L~l~~n~-l~~-~~~~~~~~l~-------~L~~L~l~~n~l~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~  146 (207)
                      |++++|+ +++ .+|..+..++       +|+.|++++|.++ .+|.  .+..+++|+.|++++|.++ .+|....++.+
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L  597 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKL  597 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEE
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcc
Confidence            9999998 887 7888777665       9999999999999 7787  8999999999999999999 67766777788


Q ss_pred             CcccccCCCCC
Q 048618          147 PVEALEGNKEL  157 (207)
Q Consensus       147 ~~~~~~~n~~~  157 (207)
                      ..+.+.+|...
T Consensus       598 ~~L~Ls~N~l~  608 (876)
T 4ecn_A          598 TDLKLDYNQIE  608 (876)
T ss_dssp             SEEECCSSCCS
T ss_pred             eEEECcCCccc
Confidence            88888887654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.76  E-value=1.7e-17  Score=129.02  Aligned_cols=127  Identities=20%  Similarity=0.370  Sum_probs=61.7

Q ss_pred             cCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCC
Q 048618           21 IGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLE  100 (207)
Q Consensus        21 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  100 (207)
                      +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+...  ..+..+++|++|++++|.+++.  +.+..+++|+
T Consensus       217 ~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~  290 (347)
T 4fmz_A          217 VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLN  290 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred             hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCC
Confidence            3444445555555554443222  44455555555555544432  2344455555555555555432  2344455555


Q ss_pred             EEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCC
Q 048618          101 KLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGN  154 (207)
Q Consensus       101 ~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n  154 (207)
                      .|++++|.+++..++.+..+++|+.|++++|++++..| ...++.+..+++.+|
T Consensus       291 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N  343 (347)
T 4fmz_A          291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQ  343 (347)
T ss_dssp             EEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC
T ss_pred             EEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhh
Confidence            55555555554445555555555555555555554433 334444444444444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.76  E-value=1.9e-18  Score=140.45  Aligned_cols=131  Identities=21%  Similarity=0.207  Sum_probs=80.6

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccch--------------
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPK--------------   67 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------------   67 (207)
                      +|+.|+|++|.+++..|..|..+++|++|+|++|.+++..|  |..+++|+.|++++|.+.+..+.              
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~  112 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS  112 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCC
Confidence            68899999999998888899999999999999999886555  77777787777777765432211              


Q ss_pred             --hhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCcccccc-CCCCCCEEECCCCcCc
Q 048618           68 --ELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFE-GMHGLSVIDISDNQLQ  134 (207)
Q Consensus        68 --~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~l~l~~n~~~  134 (207)
                        ....+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|+.|++++|.++
T Consensus       113 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             CEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence              001223445555555555444444444455555555555555544444333 3444444444444443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.76  E-value=2.8e-18  Score=131.75  Aligned_cols=156  Identities=19%  Similarity=0.131  Sum_probs=129.3

Q ss_pred             CCccEEECCCCCCcccCCccc--CCCCCCCEeeCcCCCCCCCcc----hhhcCCCCCCeeeccCCcCCCccchhhhCCCC
Q 048618            1 NSLTKLILRGNQLTGRLPTEI--GSFKELEYLDLSANRFNNSVP----KSLGSLLKLHYLSLSNNQFVQELPKELEKLVQ   74 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~   74 (207)
                      ++|+.|++++|.+.+..|..+  ..+++|++|++++|.+.+..+    ..+..+++|+.|++++|.+.+..+..++.+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            358999999999999999988  899999999999999987544    44567999999999999999888899999999


Q ss_pred             CCEEecCCCCCCCc--hh--HHhhcCCCCCEEeCCCCcCCCCccc----cccCCCCCCEEECCCCcCcccCCCC-ccc--
Q 048618           75 LSELDLSHNFLGGE--LL--SQICNMESLEKLNLSHNNLSGSIPN----CFEGMHGLSVIDISDNQLQGPVPNS-TAF--  143 (207)
Q Consensus        75 L~~L~l~~n~l~~~--~~--~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~~~~L~~l~l~~n~~~~~~~~~-~~~--  143 (207)
                      |++|++++|++.+.  .+  ..+..+++|++|++++|.++. .+.    .+..+++|+.|++++|.+++..|.. ..+  
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  249 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW  249 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence            99999999998653  22  223578999999999999973 333    3578899999999999999875543 333  


Q ss_pred             -CCCCcccccCCCCC
Q 048618          144 -RNAPVEALEGNKEL  157 (207)
Q Consensus       144 -~~~~~~~~~~n~~~  157 (207)
                       +.+..+++.+|...
T Consensus       250 ~~~L~~L~Ls~N~l~  264 (310)
T 4glp_A          250 SSALNSLNLSFAGLE  264 (310)
T ss_dssp             CTTCCCEECCSSCCC
T ss_pred             cCcCCEEECCCCCCC
Confidence             68888888888655

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=4.9e-17  Score=123.82  Aligned_cols=145  Identities=23%  Similarity=0.349  Sum_probs=124.7

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +|+.|++++|.+... + .+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+.  ..+..+++|++|+++
T Consensus        47 ~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~  120 (291)
T 1h6t_A           47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLE  120 (291)
T ss_dssp             TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEECT
T ss_pred             cccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEECC
Confidence            689999999999854 3 48899999999999999996554  89999999999999999763  348899999999999


Q ss_pred             CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCCC
Q 048618           82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKEL  157 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~~  157 (207)
                      +|.+++.  +.+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+++..+ ...++.+..+++.+|...
T Consensus       121 ~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          121 HNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             TSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred             CCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCC
Confidence            9999864  4678899999999999999865  678899999999999999987655 666778888888877543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.75  E-value=1.1e-17  Score=119.93  Aligned_cols=110  Identities=29%  Similarity=0.395  Sum_probs=102.6

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      ++++.|++++|.++ .+|..|.++++|++|++++|.+++..+..|.++++|+.|++++|.+.+..+..|..+++|++|++
T Consensus        31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence            36899999999998 67899999999999999999999888889999999999999999999988899999999999999


Q ss_pred             CCCCCCCchhHHhhcCCCCCEEeCCCCcCCC
Q 048618           81 SHNFLGGELLSQICNMESLEKLNLSHNNLSG  111 (207)
Q Consensus        81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  111 (207)
                      ++|.++...+..+..+++|+.|++++|.+..
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A          110 HGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            9999997777778899999999999999875

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.75  E-value=2e-17  Score=116.97  Aligned_cols=114  Identities=29%  Similarity=0.284  Sum_probs=103.4

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      ++|+.|++++|.+++..+..+.++++|++|++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            36899999999999877788899999999999999999877778899999999999999999888888899999999999


Q ss_pred             CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCcc
Q 048618           81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIP  114 (207)
Q Consensus        81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  114 (207)
                      ++|.+++..+..+..+++|+.|++++|.+++..+
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            9999997766677889999999999999987644

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.74  E-value=9e-18  Score=118.67  Aligned_cols=127  Identities=22%  Similarity=0.279  Sum_probs=101.3

Q ss_pred             CccEEECCCCCCcccCCcccCCCC-CCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFK-ELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      +|+.|++++|.++. ++. +..+. +|++|++++|.+++.  ..|..+++|+.|++++|.+.+..+..+..+++|++|++
T Consensus        20 ~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   95 (176)
T 1a9n_A           20 RDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   95 (176)
T ss_dssp             SCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence            67889999999884 454 44444 899999999998854  57888889999999999988766666788899999999


Q ss_pred             CCCCCCCchhH--HhhcCCCCCEEeCCCCcCCCCccc----cccCCCCCCEEECCCCcCc
Q 048618           81 SHNFLGGELLS--QICNMESLEKLNLSHNNLSGSIPN----CFEGMHGLSVIDISDNQLQ  134 (207)
Q Consensus        81 ~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~----~~~~~~~L~~l~l~~n~~~  134 (207)
                      ++|.+.. .+.  .+..+++|+.|++++|.++. .|.    .+..+++|+.+++++|...
T Consensus        96 ~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           96 TNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence            9998864 444  67788899999999999874 344    4788889999999888764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=3.7e-17  Score=135.80  Aligned_cols=143  Identities=30%  Similarity=0.439  Sum_probs=92.8

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +|+.|+|++|.+.+..+  +..+++|+.|+|++|.+.+ ++ .+..+++|+.|++++|.+...  ..+..+++|+.|+|+
T Consensus        66 ~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls  139 (605)
T 1m9s_A           66 NVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLG  139 (605)
T ss_dssp             TCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECC
T ss_pred             CCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECC
Confidence            56777777777775443  6677777777777777664 22 566677777777777776543  346667777777777


Q ss_pred             CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCC
Q 048618           82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNK  155 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~  155 (207)
                      +|.+++.  ..+..+++|+.|+|++|.+++..|  +..+++|+.|++++|++++. +....++.+..+++.+|.
T Consensus       140 ~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          140 NNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             SSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSEE
T ss_pred             CCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCCc
Confidence            7777654  456667777777777777765544  66677777777777777653 334445555555555543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.74  E-value=1.5e-17  Score=136.07  Aligned_cols=151  Identities=21%  Similarity=0.294  Sum_probs=108.5

Q ss_pred             ccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCC--ccchhhhCCCCCCEEec
Q 048618            3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQ--ELPKELEKLVQLSELDL   80 (207)
Q Consensus         3 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l   80 (207)
                      |+.|++++|.+....  .+..+++|++|++++|.+.+..|..+..+++|+.|++++|++.+  ..|..+..+++|++|++
T Consensus       304 L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~L  381 (520)
T 2z7x_B          304 IKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI  381 (520)
T ss_dssp             CSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEEC
T ss_pred             eeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEEC
Confidence            455555555544221  12577888888888888887777788888888888888888876  45567788888888888


Q ss_pred             CCCCCCCchhH-HhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCCC
Q 048618           81 SHNFLGGELLS-QICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKEL  157 (207)
Q Consensus        81 ~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~~  157 (207)
                      ++|.+.+..|. .+..+++|+.|++++|.+++..+..+.  ++|+.|++++|.++...+....++.+..+++.+|...
T Consensus       382 s~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~  457 (520)
T 2z7x_B          382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK  457 (520)
T ss_dssp             CSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC
Confidence            88888764444 466778888888888888766665543  6788888888888844433466777888888887654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.74  E-value=1.1e-17  Score=128.86  Aligned_cols=132  Identities=22%  Similarity=0.210  Sum_probs=115.6

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhc-CCCCCCeeeccCCcCCCccchhhhCCCCCCEEe
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLG-SLLKLHYLSLSNNQFVQELPKELEKLVQLSELD   79 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   79 (207)
                      ++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+.+. +. ...+++|++|+
T Consensus       120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~  197 (317)
T 3o53_A          120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLD  197 (317)
T ss_dssp             SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEE
T ss_pred             CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEE
Confidence            3689999999999988888999999999999999999987777764 789999999999999765 32 23589999999


Q ss_pred             cCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCccc
Q 048618           80 LSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGP  136 (207)
Q Consensus        80 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~  136 (207)
                      +++|.+++. +..+..+++|+.|++++|.++ .+|..+..+++|+.+++++|++.|.
T Consensus       198 Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~  252 (317)
T 3o53_A          198 LSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG  252 (317)
T ss_dssp             CCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHH
T ss_pred             CCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCc
Confidence            999999854 455889999999999999999 5677889999999999999999843

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.73  E-value=2.3e-17  Score=136.21  Aligned_cols=134  Identities=25%  Similarity=0.314  Sum_probs=109.5

Q ss_pred             CCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCc--cchhhhCCCCCCEEecCCCCCCCchh-HHhhcCCC
Q 048618           22 GSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQE--LPKELEKLVQLSELDLSHNFLGGELL-SQICNMES   98 (207)
Q Consensus        22 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~   98 (207)
                      ..+++|++|++++|.+++..|..+..+++|+.|++++|++.+.  .|..+..+++|++|++++|.+++..| ..+..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            6788999999999999988888899999999999999998763  35668889999999999999887344 45777889


Q ss_pred             CCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCCC
Q 048618           99 LEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKEL  157 (207)
Q Consensus        99 L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~~  157 (207)
                      |+.|++++|.+++..+..+.  ++|+.|++++|.++...+....++.+..+++.+|...
T Consensus       430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~  486 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK  486 (562)
T ss_dssp             CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC
T ss_pred             CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC
Confidence            99999999999876665443  6899999999999865555567788888888888654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.73  E-value=8.5e-17  Score=125.11  Aligned_cols=126  Identities=25%  Similarity=0.440  Sum_probs=110.9

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      ++|+.|++++|.++...+  +..+++|++|++++|.+.+.  +.+..+++|+.|++++|.+.+.  ..+..+++|+.|++
T Consensus       221 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L  294 (347)
T 4fmz_A          221 TRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFL  294 (347)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred             CcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEEC
Confidence            478999999999986544  89999999999999999864  4688999999999999999865  45889999999999


Q ss_pred             CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCc
Q 048618           81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQ  134 (207)
Q Consensus        81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~  134 (207)
                      ++|.+++..+..+..+++|+.|++++|.+++..|  +..+++|+.+++++|+++
T Consensus       295 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             cCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            9999998888999999999999999999997666  888999999999999985

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.73  E-value=2.2e-18  Score=141.77  Aligned_cols=133  Identities=20%  Similarity=0.283  Sum_probs=113.5

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCc-cchhhhCCCCCCEEe
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQE-LPKELEKLVQLSELD   79 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~   79 (207)
                      ++|++|++++|.+++..|.+|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+. .|..+..+++|++|+
T Consensus        50 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~  129 (549)
T 2z81_A           50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR  129 (549)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred             CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEE
Confidence            4789999999999998889999999999999999999988888899999999999999999863 567889999999999


Q ss_pred             cCCCCCCCchh-HHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcC
Q 048618           80 LSHNFLGGELL-SQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQL  133 (207)
Q Consensus        80 l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~  133 (207)
                      +++|.+.+..+ ..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+
T Consensus       130 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  184 (549)
T 2z81_A          130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES  184 (549)
T ss_dssp             EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred             CCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence            99998444444 6788899999999999999887777777666666666555554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.72  E-value=1.4e-16  Score=128.82  Aligned_cols=145  Identities=24%  Similarity=0.349  Sum_probs=88.2

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +|+.|++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +..+++|+.|+++
T Consensus       244 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~  317 (466)
T 1o6v_A          244 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLY  317 (466)
T ss_dssp             TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECC
T ss_pred             CCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECc
Confidence            45555555555554332  5556666666666666654333  5566666666666666654433  5566667777777


Q ss_pred             CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCCC
Q 048618           82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKEL  157 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~~  157 (207)
                      +|.+++..+  +..+++|+.|++++|.+++.  ..+..+++|+.|++++|++++..| ...++.+..+.+.+|...
T Consensus       318 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~  388 (466)
T 1o6v_A          318 FNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWT  388 (466)
T ss_dssp             SSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEE
T ss_pred             CCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCccc
Confidence            776665444  55666777777777776644  346667777777777777776655 455556666666555433

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.72  E-value=4.2e-17  Score=112.05  Aligned_cols=114  Identities=23%  Similarity=0.261  Sum_probs=102.1

Q ss_pred             CCCCCCEeeCcCCCCC-CCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCE
Q 048618           23 SFKELEYLDLSANRFN-NSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEK  101 (207)
Q Consensus        23 ~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  101 (207)
                      ..++++.|++++|.+. +.+|..+..+++|+.|++++|.+.+.  ..+..+++|++|++++|.+++..|..+..+++|+.
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            3588999999999998 67888889999999999999999876  77889999999999999999878888888999999


Q ss_pred             EeCCCCcCCCC-ccccccCCCCCCEEECCCCcCcccCC
Q 048618          102 LNLSHNNLSGS-IPNCFEGMHGLSVIDISDNQLQGPVP  138 (207)
Q Consensus       102 L~l~~n~l~~~-~~~~~~~~~~L~~l~l~~n~~~~~~~  138 (207)
                      |++++|.+++. .+..+..+++|+.|++++|++++..+
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  130 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND  130 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence            99999999864 34789999999999999999987654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.72  E-value=4e-17  Score=114.41  Aligned_cols=132  Identities=20%  Similarity=0.202  Sum_probs=113.1

Q ss_pred             CCCCCCEeeCcCCCCC-CCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCE
Q 048618           23 SFKELEYLDLSANRFN-NSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEK  101 (207)
Q Consensus        23 ~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  101 (207)
                      ..++|+.|++++|.+. +.+|..+..+++|+.|++++|.+.+.  ..+..+++|++|++++|.+.+..|..+..+++|+.
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            4588999999999997 67788889999999999999999876  77889999999999999999878888888999999


Q ss_pred             EeCCCCcCCCCc-cccccCCCCCCEEECCCCcCcccCC----CCcccCCCCcccccCCCC
Q 048618          102 LNLSHNNLSGSI-PNCFEGMHGLSVIDISDNQLQGPVP----NSTAFRNAPVEALEGNKE  156 (207)
Q Consensus       102 L~l~~n~l~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~----~~~~~~~~~~~~~~~n~~  156 (207)
                      |++++|.+++.. +..+..+++|+.|++++|+++...+    ....++.+..+++.+|..
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            999999998653 3788999999999999999987665    335667777777766653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.71  E-value=6.9e-17  Score=113.53  Aligned_cols=111  Identities=24%  Similarity=0.306  Sum_probs=77.8

Q ss_pred             CCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCC
Q 048618           27 LEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSH  106 (207)
Q Consensus        27 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  106 (207)
                      .+.+++++|.+. .+|..+  .++|+.|++++|.+.+..|..|..+++|++|++++|++++..+..|..+++|+.|++++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            456777777766 344433  25677777777777766677777777777777777777766666667777777777777


Q ss_pred             CcCCCCccccccCCCCCCEEECCCCcCcccCCCC
Q 048618          107 NNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS  140 (207)
Q Consensus       107 n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~  140 (207)
                      |.+++..+..+..+++|+.|++++|+++|.++..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l  121 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDI  121 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGG
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhH
Confidence            7777666666777777888888888877776543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=1.8e-16  Score=119.03  Aligned_cols=125  Identities=25%  Similarity=0.342  Sum_probs=108.8

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      ++|+.|++++|.+++..+  +.++++|++|++++|.+.+. +. +.. ++|+.|++++|.+.+.  ..+..+++|+.|++
T Consensus        63 ~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~L  135 (263)
T 1xeu_A           63 TNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSI  135 (263)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEEC
T ss_pred             CCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEEC
Confidence            478999999999996554  89999999999999999864 33 333 8999999999999864  35889999999999


Q ss_pred             CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCccc
Q 048618           81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGP  136 (207)
Q Consensus        81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~  136 (207)
                      ++|++++. + .+..+++|+.|++++|.+++.  ..+..+++|+.|++++|++++.
T Consensus       136 s~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          136 RNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            99999865 3 688899999999999999866  6788999999999999999865

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.70  E-value=2.1e-16  Score=111.10  Aligned_cols=108  Identities=28%  Similarity=0.297  Sum_probs=97.7

Q ss_pred             ccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCC
Q 048618            3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSH   82 (207)
Q Consensus         3 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   82 (207)
                      .+.+++++|.++ .+|..+.  +++++|+|++|.+++..+..|..+++|+.|++++|++.+..+..|..+++|++|++++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            468999999999 5676553  8999999999999988899999999999999999999988888899999999999999


Q ss_pred             CCCCCchhHHhhcCCCCCEEeCCCCcCCCCc
Q 048618           83 NFLGGELLSQICNMESLEKLNLSHNNLSGSI  113 (207)
Q Consensus        83 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  113 (207)
                      |++++..+..+..+++|+.|++++|.++...
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            9999877778999999999999999998553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.70  E-value=3e-16  Score=130.32  Aligned_cols=145  Identities=23%  Similarity=0.369  Sum_probs=125.3

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      ++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+.+..+  +..+++|+.|+|++|.+.+.  ..+..+++|+.|++
T Consensus        43 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~L  116 (605)
T 1m9s_A           43 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSL  116 (605)
T ss_dssp             TTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCEEEe
Confidence            368899999999984 34 58999999999999999997655  89999999999999999753  36889999999999


Q ss_pred             CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCC
Q 048618           81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKE  156 (207)
Q Consensus        81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~  156 (207)
                      ++|.+.+.  +.+..+++|+.|+|++|.+++.  ..+..+++|+.|++++|.+++..+ ...++.+..+++.+|..
T Consensus       117 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i  187 (605)
T 1m9s_A          117 EHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI  187 (605)
T ss_dssp             TTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred             cCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCC
Confidence            99999863  4588899999999999999865  678899999999999999998766 66777888888877754

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.70  E-value=6.2e-16  Score=124.99  Aligned_cols=144  Identities=31%  Similarity=0.381  Sum_probs=81.0

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +|+.|++++|.+++.  +.+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +..+++|+.|+++
T Consensus       222 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~  295 (466)
T 1o6v_A          222 NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN  295 (466)
T ss_dssp             TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred             CCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcC
Confidence            344445555544422  234555555555555555554332  5555566666666665554333  5556666666666


Q ss_pred             CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCC
Q 048618           82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKE  156 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~  156 (207)
                      +|.+.+..+  +..+++|+.|++++|.+++..+  +..+++|+.|++++|++++. +....++.+..+++.+|..
T Consensus       296 ~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l  365 (466)
T 1o6v_A          296 ENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQI  365 (466)
T ss_dssp             SSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCC
T ss_pred             CCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCcc
Confidence            666654333  5566666666666666665444  55666777777777766654 3334555666666666543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.70  E-value=1.4e-17  Score=129.05  Aligned_cols=131  Identities=22%  Similarity=0.288  Sum_probs=60.3

Q ss_pred             CccEEECCCCCCccc-CCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCC-cCCCc-cchhhhCCCCCCEE
Q 048618            2 SLTKLILRGNQLTGR-LPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNN-QFVQE-LPKELEKLVQLSEL   78 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L   78 (207)
                      +|+.|++++|.+.+. .+..+..+++|++|++++|.+++..+..+..+++|+.|++++| .++.. .+..+..+++|++|
T Consensus        94 ~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L  173 (336)
T 2ast_B           94 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  173 (336)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEE
Confidence            344555555554433 4444445555555555555544444444445555555555555 33321 33334444555555


Q ss_pred             ecCCC-CCCCc-hhHHhhcCC-CCCEEeCCCC--cCC-CCccccccCCCCCCEEECCCCc
Q 048618           79 DLSHN-FLGGE-LLSQICNME-SLEKLNLSHN--NLS-GSIPNCFEGMHGLSVIDISDNQ  132 (207)
Q Consensus        79 ~l~~n-~l~~~-~~~~~~~l~-~L~~L~l~~n--~l~-~~~~~~~~~~~~L~~l~l~~n~  132 (207)
                      ++++| .+++. .+..+..++ +|+.|++++|  .++ ..++..+..+++|+.|++++|.
T Consensus       174 ~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~  233 (336)
T 2ast_B          174 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV  233 (336)
T ss_dssp             ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred             cCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence            55555 44432 233344444 4555555544  232 1233334444455555555544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.69  E-value=2.3e-16  Score=111.24  Aligned_cols=111  Identities=23%  Similarity=0.297  Sum_probs=81.9

Q ss_pred             CCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCC
Q 048618           27 LEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSH  106 (207)
Q Consensus        27 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  106 (207)
                      -+.+++++|.+. .+|..+.  ++|+.|++++|.+.+..|..|..+++|++|++++|++++..+..+..+++|+.|++++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            367777777775 4555443  6777888888887777777777788888888888888766555667778888888888


Q ss_pred             CcCCCCccccccCCCCCCEEECCCCcCcccCCCC
Q 048618          107 NNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS  140 (207)
Q Consensus       107 n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~  140 (207)
                      |.+++..+..+..+++|+.|++++|++.+.++..
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~  124 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDI  124 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGG
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcccccccH
Confidence            8887665666777888888888888887776543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=3.3e-16  Score=129.28  Aligned_cols=107  Identities=26%  Similarity=0.306  Sum_probs=57.8

Q ss_pred             CCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCC
Q 048618           27 LEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSH  106 (207)
Q Consensus        27 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  106 (207)
                      |+.|++++|.+++ +|. |..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+++ +| .+..+++|+.|++++
T Consensus       443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred             ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence            5555555555553 333 555555555555555554 344555555555555555555553 33 455555555555555


Q ss_pred             CcCCCCc-cccccCCCCCCEEECCCCcCcccCC
Q 048618          107 NNLSGSI-PNCFEGMHGLSVIDISDNQLQGPVP  138 (207)
Q Consensus       107 n~l~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~  138 (207)
                      |.+++.. |..+..+++|+.|++++|++++..+
T Consensus       518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            5555443 5555555555555555555554443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.69  E-value=6e-17  Score=137.35  Aligned_cols=119  Identities=24%  Similarity=0.272  Sum_probs=83.4

Q ss_pred             cCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhc
Q 048618           16 RLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICN   95 (207)
Q Consensus        16 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~   95 (207)
                      ..+..+..+..|+.|+|++|.+. .+|..+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+..
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~  291 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS  291 (727)
T ss_dssp             -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred             cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence            34666777778888888888777 55555567777888888888776 56677777778888888888777 55777777


Q ss_pred             CCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCC
Q 048618           96 MESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVP  138 (207)
Q Consensus        96 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  138 (207)
                      +++|+.|+|++|.++ .+|..+..+++|+.|++++|++++..|
T Consensus       292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p  333 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFL  333 (727)
T ss_dssp             GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred             CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCCh
Confidence            778888888888776 556667777788888888887765443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.68  E-value=9.8e-17  Score=124.19  Aligned_cols=154  Identities=20%  Similarity=0.225  Sum_probs=121.5

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCC-CCCCC-cchhhcCCCCCCeeeccCC-cCCCc-cchhhhCCC-CC
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSAN-RFNNS-VPKSLGSLLKLHYLSLSNN-QFVQE-LPKELEKLV-QL   75 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~i~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~-~L   75 (207)
                      ++|+.|++++|.+++..+..+..+++|++|++++| .+++. .+..+..+++|+.|++++| .++.. .+..+..++ +|
T Consensus       118 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L  197 (336)
T 2ast_B          118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI  197 (336)
T ss_dssp             CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred             CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence            47899999999999888888999999999999999 67652 5666888999999999999 88754 567788899 99


Q ss_pred             CEEecCCC--CCC-CchhHHhhcCCCCCEEeCCCCc-CCCCccccccCCCCCCEEECCCCc-Cccc-CCCCcccCCCCcc
Q 048618           76 SELDLSHN--FLG-GELLSQICNMESLEKLNLSHNN-LSGSIPNCFEGMHGLSVIDISDNQ-LQGP-VPNSTAFRNAPVE  149 (207)
Q Consensus        76 ~~L~l~~n--~l~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~l~l~~n~-~~~~-~~~~~~~~~~~~~  149 (207)
                      ++|++++|  .++ +..+..+..+++|+.|++++|. +++..+..+..+++|+.|++++|. +... ......++.+..+
T Consensus       198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  277 (336)
T 2ast_B          198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL  277 (336)
T ss_dssp             CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEE
Confidence            99999999  455 3456677789999999999998 776777788889999999999985 3221 1112345666666


Q ss_pred             cccCC
Q 048618          150 ALEGN  154 (207)
Q Consensus       150 ~~~~n  154 (207)
                      ++.++
T Consensus       278 ~l~~~  282 (336)
T 2ast_B          278 QVFGI  282 (336)
T ss_dssp             ECTTS
T ss_pred             eccCc
Confidence            66665

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.67  E-value=6e-16  Score=109.13  Aligned_cols=106  Identities=25%  Similarity=0.311  Sum_probs=95.9

Q ss_pred             cEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCC
Q 048618            4 TKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHN   83 (207)
Q Consensus         4 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   83 (207)
                      +.+++++|.++ .+|..+.  ++|++|+|++|.+.+..|..|..+++|+.|++++|++.+..+..|..+++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            57899999997 6777664  89999999999999888999999999999999999999887778899999999999999


Q ss_pred             CCCCchhHHhhcCCCCCEEeCCCCcCCCC
Q 048618           84 FLGGELLSQICNMESLEKLNLSHNNLSGS  112 (207)
Q Consensus        84 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  112 (207)
                      .+++..+..+..+++|+.|++++|.+...
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            99977666789999999999999999854

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.67  E-value=1.6e-17  Score=140.85  Aligned_cols=114  Identities=25%  Similarity=0.303  Sum_probs=103.4

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      ++|+.|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..|..+++|+.|+|++|.+. .+|..+..+++|++|+|
T Consensus       224 ~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L  300 (727)
T 4b8c_D          224 QLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF  300 (727)
T ss_dssp             CCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEEC
T ss_pred             CCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEEC
Confidence            36889999999999 67877889999999999999999 78889999999999999999998 67888999999999999


Q ss_pred             CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCcccccc
Q 048618           81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFE  118 (207)
Q Consensus        81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  118 (207)
                      ++|.++ .+|..+..+++|+.|+|++|.+++..|..+.
T Consensus       301 ~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~  337 (727)
T 4b8c_D          301 FDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILT  337 (727)
T ss_dssp             CSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred             CCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence            999998 6677799999999999999999987776553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.65  E-value=5.5e-16  Score=109.43  Aligned_cols=131  Identities=16%  Similarity=0.160  Sum_probs=105.9

Q ss_pred             cccCCCCCCCEeeCcCCCCCCCcchhhcCCC-CCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCC
Q 048618           19 TEIGSFKELEYLDLSANRFNNSVPKSLGSLL-KLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNME   97 (207)
Q Consensus        19 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~   97 (207)
                      ..+.++.+|+.|++++|.+.. ++. +..+. +|+.|++++|.+.+.  ..+..+++|++|++++|.+++..+..+..++
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   88 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP   88 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred             HhcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence            456788999999999999984 454 55554 999999999999865  6788999999999999999966556668999


Q ss_pred             CCCEEeCCCCcCCCCccc--cccCCCCCCEEECCCCcCcccCCC----CcccCCCCcccccCC
Q 048618           98 SLEKLNLSHNNLSGSIPN--CFEGMHGLSVIDISDNQLQGPVPN----STAFRNAPVEALEGN  154 (207)
Q Consensus        98 ~L~~L~l~~n~l~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~----~~~~~~~~~~~~~~n  154 (207)
                      +|+.|++++|.++ ..|.  .+..+++|+.+++++|+++...+.    ...++.+..++..+|
T Consensus        89 ~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           89 DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            9999999999997 4454  788999999999999999855432    345566666665554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.64  E-value=7.6e-17  Score=126.35  Aligned_cols=133  Identities=22%  Similarity=0.250  Sum_probs=69.4

Q ss_pred             CccEEECCCCCCcccCC----cccCCCC-CCCEeeCcCCCCCCCcchhhcCC-----CCCCeeeccCCcCCCccchhh--
Q 048618            2 SLTKLILRGNQLTGRLP----TEIGSFK-ELEYLDLSANRFNNSVPKSLGSL-----LKLHYLSLSNNQFVQELPKEL--   69 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~----~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~--   69 (207)
                      +|+.|++++|.+++..+    ..+..++ +|++|++++|.+.+..+..+..+     ++|+.|++++|.+....+..+  
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~  102 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK  102 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence            36666666666665444    4555565 66666666666665555555443     566666666666655444432  


Q ss_pred             --hCC-CCCCEEecCCCCCCCchhHHhhc-----CCCCCEEeCCCCcCCCCc----cccccCCC-CCCEEECCCCcCc
Q 048618           70 --EKL-VQLSELDLSHNFLGGELLSQICN-----MESLEKLNLSHNNLSGSI----PNCFEGMH-GLSVIDISDNQLQ  134 (207)
Q Consensus        70 --~~l-~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~~~----~~~~~~~~-~L~~l~l~~n~~~  134 (207)
                        ..+ ++|++|++++|.+++..+..+..     ..+|+.|++++|.++...    +..+...+ +|+.|++++|.++
T Consensus       103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~  180 (362)
T 3goz_A          103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA  180 (362)
T ss_dssp             HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence              222 55666666666555444433322     135555555555554321    22223333 4555555555444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.63  E-value=8.8e-15  Score=118.00  Aligned_cols=118  Identities=22%  Similarity=0.218  Sum_probs=86.5

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      ++|+.|++++|.+++. | .+..+++|++|++++|.+++. +  +..+++|+.|++++|.+.+. +  +..+++|++|++
T Consensus        42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L  113 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNC  113 (457)
T ss_dssp             TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEEC
T ss_pred             CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEEC
Confidence            4678888888888854 4 578888888888888888764 3  77888888888888888764 2  677888888888


Q ss_pred             CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCc
Q 048618           81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQ  132 (207)
Q Consensus        81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~  132 (207)
                      ++|.+++. +  +..+++|+.|++++|.+++. +  +..+++|+.|++++|+
T Consensus       114 ~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~  159 (457)
T 3bz5_A          114 DTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNK  159 (457)
T ss_dssp             CSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCS
T ss_pred             CCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCC
Confidence            88888753 3  66778888888888877753 1  4445555555555553

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.63  E-value=8e-17  Score=127.15  Aligned_cols=132  Identities=18%  Similarity=0.221  Sum_probs=63.3

Q ss_pred             CccEEECCCCC---CcccCCccc-------CCCCCCCEeeCcCCCCCC----CcchhhcCCCCCCeeeccCCcCCCccch
Q 048618            2 SLTKLILRGNQ---LTGRLPTEI-------GSFKELEYLDLSANRFNN----SVPKSLGSLLKLHYLSLSNNQFVQELPK   67 (207)
Q Consensus         2 ~L~~L~l~~n~---i~~~~~~~~-------~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~   67 (207)
                      +|+.|+|++|.   +++.+|..+       ..+++|++|+|++|.+..    .++..+..+++|+.|++++|.+....+.
T Consensus        61 ~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~  140 (386)
T 2ca6_A           61 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA  140 (386)
T ss_dssp             TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH
T ss_pred             CccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH
Confidence            45566666542   223333333       455666666666666554    2444555555566666665555432222


Q ss_pred             hh----hCC---------CCCCEEecCCCCCCC-chh---HHhhcCCCCCEEeCCCCcCCC-----CccccccCCCCCCE
Q 048618           68 EL----EKL---------VQLSELDLSHNFLGG-ELL---SQICNMESLEKLNLSHNNLSG-----SIPNCFEGMHGLSV  125 (207)
Q Consensus        68 ~~----~~l---------~~L~~L~l~~n~l~~-~~~---~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~  125 (207)
                      .+    ..+         ++|++|++++|.++. ..+   ..+..+++|+.|++++|.++.     ..+..+..+++|+.
T Consensus       141 ~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~  220 (386)
T 2ca6_A          141 KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKV  220 (386)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCE
T ss_pred             HHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccE
Confidence            22    222         455555555555542 122   233344555555555555541     12224444555555


Q ss_pred             EECCCCcC
Q 048618          126 IDISDNQL  133 (207)
Q Consensus       126 l~l~~n~~  133 (207)
                      |++++|.+
T Consensus       221 L~Ls~n~l  228 (386)
T 2ca6_A          221 LDLQDNTF  228 (386)
T ss_dssp             EECCSSCC
T ss_pred             EECcCCCC
Confidence            55555554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.63  E-value=1.6e-18  Score=124.76  Aligned_cols=133  Identities=23%  Similarity=0.263  Sum_probs=113.4

Q ss_pred             CccEEECCCCCCcccCCc------ccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCC
Q 048618            2 SLTKLILRGNQLTGRLPT------EIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQL   75 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~------~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L   75 (207)
                      +++.++++++.+.+..|.      .+..+++|++|++++|.+.+ +| .+..+++|+.|++++|.+. .+|..+..+++|
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L   95 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL   95 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence            455667777777777666      89999999999999999986 56 8899999999999999997 567777778899


Q ss_pred             CEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCcc-ccccCCCCCCEEECCCCcCcccCCC
Q 048618           76 SELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIP-NCFEGMHGLSVIDISDNQLQGPVPN  139 (207)
Q Consensus        76 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~  139 (207)
                      ++|++++|.+++ .| .+..+++|+.|++++|.+++..+ ..+..+++|+.+++++|++++.+|.
T Consensus        96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A           96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            999999999986 44 68889999999999999985433 5788999999999999999887665

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.62  E-value=3.8e-16  Score=123.27  Aligned_cols=136  Identities=21%  Similarity=0.326  Sum_probs=89.4

Q ss_pred             CccEEECCCCCCc-ccCC---cccCCCCCCCEeeCcCCCCCC-----CcchhhcCCCCCCeeeccCCcCC----Cccchh
Q 048618            2 SLTKLILRGNQLT-GRLP---TEIGSFKELEYLDLSANRFNN-----SVPKSLGSLLKLHYLSLSNNQFV----QELPKE   68 (207)
Q Consensus         2 ~L~~L~l~~n~i~-~~~~---~~~~~l~~L~~L~L~~n~i~~-----~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~   68 (207)
                      +|+.|++++|.++ ...+   ..+..+++|++|++++|.+..     ..+..+..+++|+.|++++|.++    ..+|..
T Consensus       160 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~  239 (386)
T 2ca6_A          160 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA  239 (386)
T ss_dssp             CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred             CCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH
Confidence            5677777777776 2233   355567777777777777652     22335667777777777777764    445666


Q ss_pred             hhCCCCCCEEecCCCCCCCc----hhHHhhc--CCCCCEEeCCCCcCCC----Cccccc-cCCCCCCEEECCCCcCcccC
Q 048618           69 LEKLVQLSELDLSHNFLGGE----LLSQICN--MESLEKLNLSHNNLSG----SIPNCF-EGMHGLSVIDISDNQLQGPV  137 (207)
Q Consensus        69 ~~~l~~L~~L~l~~n~l~~~----~~~~~~~--l~~L~~L~l~~n~l~~----~~~~~~-~~~~~L~~l~l~~n~~~~~~  137 (207)
                      +..+++|++|++++|.+++.    ++..+..  +++|+.|++++|.++.    .++..+ ..+++|+.|++++|++++..
T Consensus       240 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            77777777777777777654    3344432  6777777777777775    355555 45677777777777776554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.61  E-value=4.9e-15  Score=122.13  Aligned_cols=32  Identities=16%  Similarity=0.103  Sum_probs=12.9

Q ss_pred             CEEECCCCcCcccCCCCcccCCCCcccccCCC
Q 048618          124 SVIDISDNQLQGPVPNSTAFRNAPVEALEGNK  155 (207)
Q Consensus       124 ~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~  155 (207)
                      +.|++++|.++...+....++.+..+++.+|+
T Consensus       210 ~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          210 IFFRCRENRITHIPENILSLDPTCTIILEDNP  241 (571)
T ss_dssp             EEEECCSSCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred             eEEecCCCcceecCHHHhcCCCCCEEEeeCCc
Confidence            44444444444322222333444444444443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.61  E-value=2.4e-16  Score=123.53  Aligned_cols=155  Identities=23%  Similarity=0.237  Sum_probs=99.7

Q ss_pred             CccEEECCCCCCcccCCcccCCC-----CCCCEeeCcCCCCCCCcchhhcC----C-CCCCeeeccCCcCCCccchhhh-
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSF-----KELEYLDLSANRFNNSVPKSLGS----L-LKLHYLSLSNNQFVQELPKELE-   70 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l-----~~L~~L~L~~n~i~~~~~~~~~~----l-~~L~~L~l~~n~l~~~~~~~~~-   70 (207)
                      +|+.|++++|.+++..+..+..+     ++|++|++++|.+++..+..+..    . ++|+.|++++|.+....+..+. 
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  131 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ  131 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence            67888888888887766666664     88888888888887666654433    3 7788888888887766554433 


Q ss_pred             ---C-CCCCCEEecCCCCCCCchh----HHhhcCC-CCCEEeCCCCcCCCCccc----cccCC-CCCCEEECCCCcCccc
Q 048618           71 ---K-LVQLSELDLSHNFLGGELL----SQICNME-SLEKLNLSHNNLSGSIPN----CFEGM-HGLSVIDISDNQLQGP  136 (207)
Q Consensus        71 ---~-l~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~----~~~~~-~~L~~l~l~~n~~~~~  136 (207)
                         . ..+|++|++++|.+++...    ..+..++ +|+.|++++|.+++..+.    .+... ++|+.|++++|.++..
T Consensus       132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~  211 (362)
T 3goz_A          132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK  211 (362)
T ss_dssp             HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred             HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh
Confidence               3 2478888888887765333    3334444 788888888877765543    33344 4777777777777652


Q ss_pred             CCC----C-cc-cCCCCcccccCCCC
Q 048618          137 VPN----S-TA-FRNAPVEALEGNKE  156 (207)
Q Consensus       137 ~~~----~-~~-~~~~~~~~~~~n~~  156 (207)
                      ...    . .. ...+..+++.+|..
T Consensus       212 ~~~~l~~~l~~~~~~L~~L~Ls~N~l  237 (362)
T 3goz_A          212 SYAELAYIFSSIPNHVVSLNLCLNCL  237 (362)
T ss_dssp             CHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCC
Confidence            111    1 11 23566666666543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.60  E-value=1.1e-14  Score=120.33  Aligned_cols=122  Identities=28%  Similarity=0.282  Sum_probs=107.0

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      .|+.|++++|.+++ +|. +..+++|+.|+|++|.++ .+|..|..+++|+.|++++|.+++ +| .+..+++|+.|+++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            57899999999996 566 999999999999999998 778899999999999999999987 56 78999999999999


Q ss_pred             CCCCCCch-hHHhhcCCCCCEEeCCCCcCCCCccc---cccCCCCCCEEEC
Q 048618           82 HNFLGGEL-LSQICNMESLEKLNLSHNNLSGSIPN---CFEGMHGLSVIDI  128 (207)
Q Consensus        82 ~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~~~L~~l~l  128 (207)
                      +|.+++.. |..+..+++|+.|++++|.+++..+.   .+..+++|+.|++
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            99999776 88999999999999999999876543   3445788998864

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.60  E-value=3.2e-15  Score=116.36  Aligned_cols=102  Identities=23%  Similarity=0.244  Sum_probs=56.7

Q ss_pred             EECCCC-CCcccCCcccCCCCCCCEeeCcC-CCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCC
Q 048618            6 LILRGN-QLTGRLPTEIGSFKELEYLDLSA-NRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHN   83 (207)
Q Consensus         6 L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   83 (207)
                      ++.+++ .++ .+|. +..+.+|++|+|++ |.+.+..+..|.++++|+.|+|++|++.+..|..|.++++|+.|+|++|
T Consensus        13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            455555 555 3444 55556666666654 5555555555556666666666666665555555555666666666666


Q ss_pred             CCCCchhHHhhcCCCCCEEeCCCCcCC
Q 048618           84 FLGGELLSQICNMESLEKLNLSHNNLS  110 (207)
Q Consensus        84 ~l~~~~~~~~~~l~~L~~L~l~~n~l~  110 (207)
                      ++++..+..+..+. |+.|++.+|.+.
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            65544443443333 555566555554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.60  E-value=3e-14  Score=114.87  Aligned_cols=122  Identities=25%  Similarity=0.306  Sum_probs=57.9

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccch--------------
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPK--------------   67 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------------   67 (207)
                      +|+.|++++|.+++. +  +.++++|++|++++|.+++. +  +..+++|+.|++++|.+.+....              
T Consensus        86 ~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~  159 (457)
T 3bz5_A           86 NLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNK  159 (457)
T ss_dssp             TCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCS
T ss_pred             CCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCC
Confidence            455666666665543 2  55555555555555555542 2  44555555555555554432100              


Q ss_pred             -----hhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcc
Q 048618           68 -----ELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQG  135 (207)
Q Consensus        68 -----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~  135 (207)
                           .+..+++|++|++++|.+++. +  +..+++|+.|++++|.+++.   .+..+++|+.|++++|++++
T Consensus       160 ~~~~~~~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~  226 (457)
T 3bz5_A          160 KITKLDVTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE  226 (457)
T ss_dssp             CCCCCCCTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC
T ss_pred             cccccccccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc
Confidence                 123344444444444444432 1  33444444444444444432   14444455555555555544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.59  E-value=2.1e-15  Score=117.58  Aligned_cols=156  Identities=17%  Similarity=0.136  Sum_probs=104.7

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcc-hhhcCCCCCCe-eeccCCcCCCccchhhhCCCCCCEE
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVP-KSLGSLLKLHY-LSLSNNQFVQELPKELEKLVQLSEL   78 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~-L~l~~n~l~~~~~~~~~~l~~L~~L   78 (207)
                      +++++|+|++|.|+.+.+.+|.++++|++|+|++|.+.+.++ ..|.++++++. +.+.+|++....|+.|..+++|++|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            368999999999997777789999999999999999876554 56888888775 5667788988888889999999999


Q ss_pred             ecCCCCCCCchhHHhhcCCC--------------------------CCEEeCCCCcCCCCccccccCCCCCCEEECCC-C
Q 048618           79 DLSHNFLGGELLSQICNMES--------------------------LEKLNLSHNNLSGSIPNCFEGMHGLSVIDISD-N  131 (207)
Q Consensus        79 ~l~~n~l~~~~~~~~~~l~~--------------------------L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~-n  131 (207)
                      ++++|.+....+..+....+                          ++.|++++|.++...+..+ ...+++.+++.+ |
T Consensus       110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n  188 (350)
T 4ay9_X          110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNN  188 (350)
T ss_dssp             EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCT
T ss_pred             cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCC
Confidence            99999887544333333333                          4445555555553222222 233455555543 3


Q ss_pred             cCcccCCCC-cccCCCCcccccCCCCC
Q 048618          132 QLQGPVPNS-TAFRNAPVEALEGNKEL  157 (207)
Q Consensus       132 ~~~~~~~~~-~~~~~~~~~~~~~n~~~  157 (207)
                      .++...+.. ..+..+..+++.+|...
T Consensus       189 ~l~~i~~~~f~~l~~L~~LdLs~N~l~  215 (350)
T 4ay9_X          189 NLEELPNDVFHGASGPVILDISRTRIH  215 (350)
T ss_dssp             TCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred             cccCCCHHHhccCcccchhhcCCCCcC
Confidence            333322222 34556666666666543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.57  E-value=3.4e-15  Score=116.15  Aligned_cols=109  Identities=21%  Similarity=0.194  Sum_probs=96.6

Q ss_pred             CEeeCcCC-CCCCCcchhhcCCCCCCeeeccC-CcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCC
Q 048618           28 EYLDLSAN-RFNNSVPKSLGSLLKLHYLSLSN-NQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLS  105 (207)
Q Consensus        28 ~~L~L~~n-~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  105 (207)
                      ..++.+++ .++ .+|. +..+++|+.|+|++ |.+.+..+..|.++++|+.|+|++|++++..+..|..+++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            45688888 887 5777 99999999999996 99988888899999999999999999998888899999999999999


Q ss_pred             CCcCCCCccccccCCCCCCEEECCCCcCcccCCC
Q 048618          106 HNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPN  139 (207)
Q Consensus       106 ~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  139 (207)
                      +|.+++..+..+..++ |+.|++.+|++.|.+..
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l  121 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCAL  121 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGG
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccCCCcc
Confidence            9999977777777666 99999999999987653

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.57  E-value=6.7e-16  Score=124.30  Aligned_cols=156  Identities=21%  Similarity=0.122  Sum_probs=94.9

Q ss_pred             CCccEEECCCCCCcccC-----CcccCCCCCCCEeeCcCCCCCCC----cchhhcCCCCCCeeeccCCcCCCccchhhhC
Q 048618            1 NSLTKLILRGNQLTGRL-----PTEIGSFKELEYLDLSANRFNNS----VPKSLGSLLKLHYLSLSNNQFVQELPKELEK   71 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~   71 (207)
                      ++|+.|++++|.+++..     +..+..+++|++|++++|.++..    ++..+..+++|+.|++++|.+....+..+..
T Consensus       227 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~  306 (461)
T 1z7x_W          227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE  306 (461)
T ss_dssp             TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHH
Confidence            36778888888776532     22223577788888888877643    4555666777888888877775443333322


Q ss_pred             -----CCCCCEEecCCCCCCCc----hhHHhhcCCCCCEEeCCCCcCCCCccccccC-----CCCCCEEECCCCcCcc--
Q 048618           72 -----LVQLSELDLSHNFLGGE----LLSQICNMESLEKLNLSHNNLSGSIPNCFEG-----MHGLSVIDISDNQLQG--  135 (207)
Q Consensus        72 -----l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----~~~L~~l~l~~n~~~~--  135 (207)
                           .++|++|++++|.+++.    .+..+..+++|+.|++++|.+++..+..+..     .++|+.|++++|.++.  
T Consensus       307 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~  386 (461)
T 1z7x_W          307 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS  386 (461)
T ss_dssp             HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH
T ss_pred             HhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhh
Confidence                 25777777777777654    3444555677777777777776543333322     4567777777777663  


Q ss_pred             --cCCCC-cccCCCCcccccCCCC
Q 048618          136 --PVPNS-TAFRNAPVEALEGNKE  156 (207)
Q Consensus       136 --~~~~~-~~~~~~~~~~~~~n~~  156 (207)
                        .++.. ...+.+..+++.+|..
T Consensus       387 ~~~l~~~l~~~~~L~~L~l~~N~i  410 (461)
T 1z7x_W          387 CSSLAATLLANHSLRELDLSNNCL  410 (461)
T ss_dssp             HHHHHHHHHHCCCCCEEECCSSSC
T ss_pred             HHHHHHHHHhCCCccEEECCCCCC
Confidence              22221 3345566666666643

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.56  E-value=6.5e-17  Score=116.38  Aligned_cols=128  Identities=23%  Similarity=0.275  Sum_probs=109.2

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      ++|+.|++++|.+++ +| .+.++++|++|++++|.+. .+|..+..+++|+.|++++|.+.+ +| .+..+++|++|++
T Consensus        48 ~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l  122 (198)
T 1ds9_A           48 KACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYM  122 (198)
T ss_dssp             TTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEE
T ss_pred             CCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEEC
Confidence            478999999999996 66 8899999999999999998 677778888999999999999986 44 6888899999999


Q ss_pred             CCCCCCCchh-HHhhcCCCCCEEeCCCCcCCCCccc----------cccCCCCCCEEECCCCcCcc
Q 048618           81 SHNFLGGELL-SQICNMESLEKLNLSHNNLSGSIPN----------CFEGMHGLSVIDISDNQLQG  135 (207)
Q Consensus        81 ~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~----------~~~~~~~L~~l~l~~n~~~~  135 (207)
                      ++|.+++..+ ..+..+++|+.|++++|.+++..|.          .+..+++|+.||  +++++.
T Consensus       123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             SEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            9999986443 5788999999999999999766544          378899999887  677653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.56  E-value=1.3e-14  Score=119.53  Aligned_cols=122  Identities=31%  Similarity=0.392  Sum_probs=82.5

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +|+.|++++|.+++ +|.   .+++|+.|++++|.+++ +|.   .+++|+.|++++|.+++ +|. +.  ++|+.|+++
T Consensus       121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls  188 (571)
T 3cvr_A          121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVS  188 (571)
T ss_dssp             TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECC
T ss_pred             CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECc
Confidence            35555555555554 333   45666666666666664 333   45677777777777765 444 44  678888888


Q ss_pred             CCCCCCchhHHhhcCCCC-------CEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC
Q 048618           82 HNFLGGELLSQICNMESL-------EKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS  140 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L-------~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~  140 (207)
                      +|.++ .+|. +..  +|       +.|++++|.++ .+|..+..+++|+.|++++|++++..|..
T Consensus       189 ~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~  249 (571)
T 3cvr_A          189 TNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRES  249 (571)
T ss_dssp             SSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred             CCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence            88887 4444 433  66       99999999998 56777777999999999999998766543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.54  E-value=1.3e-13  Score=111.15  Aligned_cols=120  Identities=29%  Similarity=0.390  Sum_probs=72.4

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +|++|++++|.+++ +| .+.++++|++|++++|.+++ +|..   ..+|+.|++++|.+.+ +| .+..+++|++|+++
T Consensus       132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~  203 (454)
T 1jl5_A          132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD  203 (454)
T ss_dssp             TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred             CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence            56666666666664 44 46667777777777776664 3322   2366666666666654 33 46666667777777


Q ss_pred             CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcc
Q 048618           82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQG  135 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~  135 (207)
                      +|.+++ .|..   ..+|+.|++++|.++ .+|+ +..+++|+.|++++|++++
T Consensus       204 ~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~  251 (454)
T 1jl5_A          204 NNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT  251 (454)
T ss_dssp             SSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS
T ss_pred             CCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc
Confidence            766654 2211   235666666666665 3443 5666667777777766664

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.51  E-value=3.3e-15  Score=120.24  Aligned_cols=155  Identities=22%  Similarity=0.170  Sum_probs=116.1

Q ss_pred             CccEEECCCCCCccc----CCcccCCCCCCCEeeCcCCCCCCCcc-----hhhcCCCCCCeeeccCCcCCCc----cchh
Q 048618            2 SLTKLILRGNQLTGR----LPTEIGSFKELEYLDLSANRFNNSVP-----KSLGSLLKLHYLSLSNNQFVQE----LPKE   68 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~~~-----~~~~~l~~L~~L~l~~n~l~~~----~~~~   68 (207)
                      +|+.|++++|.++..    ++..+..+++|++|++++|.+.+...     ..+..+++|+.|++++|.++..    ++..
T Consensus       200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  279 (461)
T 1z7x_W          200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV  279 (461)
T ss_dssp             CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence            789999999998864    46777788999999999998875332     2233578999999999988764    5667


Q ss_pred             hhCCCCCCEEecCCCCCCCchhHHhhc-----CCCCCEEeCCCCcCCCC----ccccccCCCCCCEEECCCCcCcccCCC
Q 048618           69 LEKLVQLSELDLSHNFLGGELLSQICN-----MESLEKLNLSHNNLSGS----IPNCFEGMHGLSVIDISDNQLQGPVPN  139 (207)
Q Consensus        69 ~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~l~l~~n~~~~~~~~  139 (207)
                      +..+++|++|++++|.+.+..+..+..     .++|+.|++++|.+++.    ++..+..+++|+.|++++|.++...+.
T Consensus       280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  359 (461)
T 1z7x_W          280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR  359 (461)
T ss_dssp             HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence            777899999999999887655555443     26899999999998865    456677789999999999988754322


Q ss_pred             Cc------ccCCCCcccccCCCC
Q 048618          140 ST------AFRNAPVEALEGNKE  156 (207)
Q Consensus       140 ~~------~~~~~~~~~~~~n~~  156 (207)
                      ..      ....+..+++.+|..
T Consensus       360 ~l~~~l~~~~~~L~~L~L~~n~i  382 (461)
T 1z7x_W          360 ELCQGLGQPGSVLRVLWLADCDV  382 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHHHHcCCCCceEEEECCCCCC
Confidence            10      134677777777753

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.51  E-value=3.7e-13  Score=108.43  Aligned_cols=117  Identities=24%  Similarity=0.317  Sum_probs=57.3

Q ss_pred             CCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCC
Q 048618           26 ELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLS  105 (207)
Q Consensus        26 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  105 (207)
                      +|++|++++|.+.+ +| .|..+++|+.|++++|++.+ +|..   ..+|++|++++|.+++ .| .+..+++|+.|+++
T Consensus       132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~  203 (454)
T 1jl5_A          132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD  203 (454)
T ss_dssp             TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred             CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence            44555555555443 33 34555555555555555443 2221   1345555555555543 23 34555555555555


Q ss_pred             CCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCC
Q 048618          106 HNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNK  155 (207)
Q Consensus       106 ~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~  155 (207)
                      +|.+++ +|..   .++|+.|++++|.++ .+|....+..+..+++.+|.
T Consensus       204 ~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~  248 (454)
T 1jl5_A          204 NNSLKK-LPDL---PLSLESIVAGNNILE-ELPELQNLPFLTTIYADNNL  248 (454)
T ss_dssp             SSCCSS-CCCC---CTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSC
T ss_pred             CCcCCc-CCCC---cCcccEEECcCCcCC-cccccCCCCCCCEEECCCCc
Confidence            555553 2221   135666666666655 33444445555555555553

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.49  E-value=2.1e-13  Score=113.62  Aligned_cols=38  Identities=18%  Similarity=0.383  Sum_probs=17.7

Q ss_pred             CCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcc
Q 048618           97 ESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQG  135 (207)
Q Consensus        97 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~  135 (207)
                      ++|+.|++++|.++ .+|..+..+++|+.|++++|++++
T Consensus       261 ~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          261 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE  298 (622)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCH
T ss_pred             ccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCC
Confidence            44444444444444 334444444444445555444443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.46  E-value=8.9e-13  Score=109.83  Aligned_cols=77  Identities=29%  Similarity=0.254  Sum_probs=47.1

Q ss_pred             CCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCccccc
Q 048618           73 VQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALE  152 (207)
Q Consensus        73 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~  152 (207)
                      ++|+.|++++|.+++ +|   ..+++|+.|++++|.++. +|.   .+++|+.|++++|.++...+....++.+..+++.
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~  292 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLE  292 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECC
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEec
Confidence            456666666666653 23   344667777777777663 333   4567778888888777433333556667777777


Q ss_pred             CCCCC
Q 048618          153 GNKEL  157 (207)
Q Consensus       153 ~n~~~  157 (207)
                      +|+..
T Consensus       293 ~N~l~  297 (622)
T 3g06_A          293 GNPLS  297 (622)
T ss_dssp             SCCCC
T ss_pred             CCCCC
Confidence            76543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.44  E-value=3.3e-14  Score=111.69  Aligned_cols=154  Identities=21%  Similarity=0.230  Sum_probs=86.5

Q ss_pred             CccEEECCCCCCcccCCcccCC-----CCCCCEeeCcCCCCCCCcchhhc-CCCCCCeeeccCCcCCCccchhh-----h
Q 048618            2 SLTKLILRGNQLTGRLPTEIGS-----FKELEYLDLSANRFNNSVPKSLG-SLLKLHYLSLSNNQFVQELPKEL-----E   70 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~-----l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~-----~   70 (207)
                      +|+.|++++|.++......+..     ..+|++|+|++|.++......+. .+++|+.|++++|.+.......+     .
T Consensus        73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~  152 (372)
T 3un9_A           73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH  152 (372)
T ss_dssp             TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred             hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence            5677777777776543333322     25777777777776543333332 34566777777777654433332     2


Q ss_pred             CCCCCCEEecCCCCCCCch----hHHhhcCCCCCEEeCCCCcCCCC----ccccccCCCCCCEEECCCCcCcccCCCC--
Q 048618           71 KLVQLSELDLSHNFLGGEL----LSQICNMESLEKLNLSHNNLSGS----IPNCFEGMHGLSVIDISDNQLQGPVPNS--  140 (207)
Q Consensus        71 ~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~l~l~~n~~~~~~~~~--  140 (207)
                      ..++|++|++++|.+++..    +..+...++|++|+|++|.++..    +.+.+...++|+.|++++|.++......  
T Consensus       153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~  232 (372)
T 3un9_A          153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA  232 (372)
T ss_dssp             TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred             cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence            3456777777777665422    23334566677777777776542    2445555666777777777665321111  


Q ss_pred             ---cccCCCCcccccCCC
Q 048618          141 ---TAFRNAPVEALEGNK  155 (207)
Q Consensus       141 ---~~~~~~~~~~~~~n~  155 (207)
                         ...+.+..+++.+|.
T Consensus       233 ~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          233 RAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             HHHHHCSSCCEEECTTSS
T ss_pred             HHHHhCCCCCEEeccCCC
Confidence               122455566666654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.40  E-value=4e-13  Score=104.68  Aligned_cols=137  Identities=24%  Similarity=0.260  Sum_probs=101.0

Q ss_pred             CCccEEECCCCCCcccCC-cccCCCCCCCE-eeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccc------------
Q 048618            1 NSLTKLILRGNQLTGRLP-TEIGSFKELEY-LDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELP------------   66 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~-L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------   66 (207)
                      ++|++|+|++|.+.+.+| .+|.+++++++ +.+..|++....+..|..+++|+.|++++|.+....+            
T Consensus        54 ~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l  133 (350)
T 4ay9_X           54 GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL  133 (350)
T ss_dssp             TTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEE
T ss_pred             CCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhh
Confidence            478899999998865444 57788888776 4556688887777888888889988888887654322            


Q ss_pred             -------------hhhhCC-CCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCC-CcCCCCccccccCCCCCCEEECCCC
Q 048618           67 -------------KELEKL-VQLSELDLSHNFLGGELLSQICNMESLEKLNLSH-NNLSGSIPNCFEGMHGLSVIDISDN  131 (207)
Q Consensus        67 -------------~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~l~l~~n  131 (207)
                                   ..|..+ ..++.|++++|.++...+.. ....+|+.+++.+ |.++...++.+..+++|+.|++++|
T Consensus       134 ~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~-f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N  212 (350)
T 4ay9_X          134 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA-FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT  212 (350)
T ss_dssp             EEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTS-STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS
T ss_pred             hhccccccccccccchhhcchhhhhhccccccccCCChhh-ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC
Confidence                         123333 25778999999998544443 3456899999975 6777566678899999999999999


Q ss_pred             cCcccCC
Q 048618          132 QLQGPVP  138 (207)
Q Consensus       132 ~~~~~~~  138 (207)
                      +++...+
T Consensus       213 ~l~~lp~  219 (350)
T 4ay9_X          213 RIHSLPS  219 (350)
T ss_dssp             CCCCCCS
T ss_pred             CcCccCh
Confidence            9986544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.40  E-value=2e-14  Score=112.96  Aligned_cols=135  Identities=23%  Similarity=0.252  Sum_probs=106.7

Q ss_pred             CccEEECCCCCCcccCCccc-CCCCCCCEeeCcCCCCCCCcchhhc-----CCCCCCeeeccCCcCCCc----cchhhhC
Q 048618            2 SLTKLILRGNQLTGRLPTEI-GSFKELEYLDLSANRFNNSVPKSLG-----SLLKLHYLSLSNNQFVQE----LPKELEK   71 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~-----~l~~L~~L~l~~n~l~~~----~~~~~~~   71 (207)
                      +|+.|+|++|.++......+ ..+.+|+.|+|++|.++......+.     ..++|+.|++++|.++..    ++..+..
T Consensus       102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~  181 (372)
T 3un9_A          102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG  181 (372)
T ss_dssp             CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT
T ss_pred             CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc
Confidence            68999999999986544444 3467899999999999865555542     467899999999998653    4455578


Q ss_pred             CCCCCEEecCCCCCCCch----hHHhhcCCCCCEEeCCCCcCCCC----ccccccCCCCCCEEECCCCcCccc
Q 048618           72 LVQLSELDLSHNFLGGEL----LSQICNMESLEKLNLSHNNLSGS----IPNCFEGMHGLSVIDISDNQLQGP  136 (207)
Q Consensus        72 l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~l~l~~n~~~~~  136 (207)
                      +++|++|++++|.+++..    ...+...++|+.|+|++|.++..    +...+...++|+.|++++|+++..
T Consensus       182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            899999999999997643    45566778999999999999853    345566789999999999998643

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.38  E-value=1.3e-12  Score=100.93  Aligned_cols=70  Identities=17%  Similarity=0.142  Sum_probs=50.3

Q ss_pred             CCccEEECCCCCCc--------------------ccCCcccCC--------CCCCCEeeCcCCCCCCCcchhhcCCCCCC
Q 048618            1 NSLTKLILRGNQLT--------------------GRLPTEIGS--------FKELEYLDLSANRFNNSVPKSLGSLLKLH   52 (207)
Q Consensus         1 ~~L~~L~l~~n~i~--------------------~~~~~~~~~--------l~~L~~L~L~~n~i~~~~~~~~~~l~~L~   52 (207)
                      ++|+.|+|++|.+.                    .+.+.+|.+        +++|+.++|.+ .+..+.+.+|.++++|+
T Consensus        49 ~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~  127 (329)
T 3sb4_A           49 PSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLK  127 (329)
T ss_dssp             TTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCC
T ss_pred             ccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccc
Confidence            36888888888887                    334456677        88888888888 77767777888888888


Q ss_pred             eeeccCCcCCCccchhhhC
Q 048618           53 YLSLSNNQFVQELPKELEK   71 (207)
Q Consensus        53 ~L~l~~n~l~~~~~~~~~~   71 (207)
                      .+++..|.+....+..|..
T Consensus       128 ~l~l~~n~i~~i~~~aF~~  146 (329)
T 3sb4_A          128 ICQIRKKTAPNLLPEALAD  146 (329)
T ss_dssp             EEEBCCSSCCEECTTSSCT
T ss_pred             eEEcCCCCccccchhhhcC
Confidence            8888888764444443433

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.36  E-value=3.4e-12  Score=98.63  Aligned_cols=54  Identities=15%  Similarity=0.280  Sum_probs=39.6

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeee
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLS   55 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~   55 (207)
                      ++|+.|++.+ .++.+.+.+|.++++|+.+++.+|.+....+..|.+..++..+.
T Consensus       101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~  154 (329)
T 3sb4_A          101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIP  154 (329)
T ss_dssp             TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEEC
T ss_pred             CCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEec
Confidence            3688889988 88878888999999999999999987655555555544444443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.20  E-value=4.5e-12  Score=104.97  Aligned_cols=134  Identities=16%  Similarity=0.082  Sum_probs=70.0

Q ss_pred             CccEEECCCCCCcccCCcccCC-CCCCCEeeCc----CCCCCCC-----cchhhcCCCCCCeeeccCCc--CCCccchhh
Q 048618            2 SLTKLILRGNQLTGRLPTEIGS-FKELEYLDLS----ANRFNNS-----VPKSLGSLLKLHYLSLSNNQ--FVQELPKEL   69 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~-l~~L~~L~L~----~n~i~~~-----~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~   69 (207)
                      +|+.|++..|.+++..+..+.. +++|+.|+++    .|.+++.     ++..+.++++|+.|++++|.  ++......+
T Consensus       379 ~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~  458 (592)
T 3ogk_B          379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI  458 (592)
T ss_dssp             TCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH
T ss_pred             cCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH
Confidence            3455555444544443333333 5555555553    3444432     22224445566666665432  333322222


Q ss_pred             -hCCCCCCEEecCCCCCCCch-hHHhhcCCCCCEEeCCCCcCCCC-ccccccCCCCCCEEECCCCcCcc
Q 048618           70 -EKLVQLSELDLSHNFLGGEL-LSQICNMESLEKLNLSHNNLSGS-IPNCFEGMHGLSVIDISDNQLQG  135 (207)
Q Consensus        70 -~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~l~l~~n~~~~  135 (207)
                       ..+++|++|++++|.+++.. +..+..+++|+.|++++|.++.. .+..+..+++|+.|++++|+++.
T Consensus       459 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          459 GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             HHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred             HHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence             23566777777777665432 33345566777777777776533 23344556677777777777654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.08  E-value=8.4e-11  Score=97.38  Aligned_cols=82  Identities=12%  Similarity=0.138  Sum_probs=38.7

Q ss_pred             CCCCCCEeeCcCCCCCCC----cchhhcCCCCCCeeeccCCcCCC----ccchhhhCCCCCCEEecCCCCCCCchhHHhh
Q 048618           23 SFKELEYLDLSANRFNNS----VPKSLGSLLKLHYLSLSNNQFVQ----ELPKELEKLVQLSELDLSHNFLGGELLSQIC   94 (207)
Q Consensus        23 ~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~   94 (207)
                      ++++|++|+|++|.+++.    ++..+..+++|+.|++++|.+.+    .++..+.++++|+.|++++|.+.+ .+..+.
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~  240 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK  240 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence            455555555555554433    22223345555555555555541    223333445555555555555442 334444


Q ss_pred             cCCCCCEEeCC
Q 048618           95 NMESLEKLNLS  105 (207)
Q Consensus        95 ~l~~L~~L~l~  105 (207)
                      .+++|+.|+++
T Consensus       241 ~~~~L~~L~l~  251 (592)
T 3ogk_B          241 AAANLEEFCGG  251 (592)
T ss_dssp             HCTTCCEEEEC
T ss_pred             hhhHHHhhccc
Confidence            44444444443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.06  E-value=1.9e-10  Score=81.59  Aligned_cols=117  Identities=18%  Similarity=0.175  Sum_probs=90.3

Q ss_pred             CcccCCCCCCCEeeCcCC-CCCCC----cchhhcCCCCCCeeeccCCcCCCc----cchhhhCCCCCCEEecCCCCCCCc
Q 048618           18 PTEIGSFKELEYLDLSAN-RFNNS----VPKSLGSLLKLHYLSLSNNQFVQE----LPKELEKLVQLSELDLSHNFLGGE   88 (207)
Q Consensus        18 ~~~~~~l~~L~~L~L~~n-~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~   88 (207)
                      ...+...++|++|+|++| .+...    +...+...++|+.|++++|.+...    +.+.+...++|++|+|++|.+.+.
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            345677899999999999 88753    334456678899999999998653    344556668899999999999865


Q ss_pred             h----hHHhhcCCCCCEEeC--CCCcCCCC----ccccccCCCCCCEEECCCCcCc
Q 048618           89 L----LSQICNMESLEKLNL--SHNNLSGS----IPNCFEGMHGLSVIDISDNQLQ  134 (207)
Q Consensus        89 ~----~~~~~~l~~L~~L~l--~~n~l~~~----~~~~~~~~~~L~~l~l~~n~~~  134 (207)
                      .    ...+...++|++|++  ++|.+...    +.+.+...++|+.|++++|.+.
T Consensus       109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            3    345556788999999  88999754    4456667789999999999875

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.01  E-value=2e-10  Score=81.44  Aligned_cols=110  Identities=16%  Similarity=0.180  Sum_probs=87.3

Q ss_pred             CCccEEECCCC-CCccc----CCcccCCCCCCCEeeCcCCCCCCCc----chhhcCCCCCCeeeccCCcCCCc----cch
Q 048618            1 NSLTKLILRGN-QLTGR----LPTEIGSFKELEYLDLSANRFNNSV----PKSLGSLLKLHYLSLSNNQFVQE----LPK   67 (207)
Q Consensus         1 ~~L~~L~l~~n-~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~~~   67 (207)
                      ++|+.|+|++| .+...    +...+...++|++|+|++|.+....    ...+...++|+.|++++|.+...    +.+
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~  115 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE  115 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence            46899999999 88753    4456677899999999999997543    34455668999999999999754    455


Q ss_pred             hhhCCCCCCEEec--CCCCCCCchh----HHhhcCCCCCEEeCCCCcCC
Q 048618           68 ELEKLVQLSELDL--SHNFLGGELL----SQICNMESLEKLNLSHNNLS  110 (207)
Q Consensus        68 ~~~~l~~L~~L~l--~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~  110 (207)
                      .+...++|++|++  ++|.+.....    ..+...++|+.|++++|.+.
T Consensus       116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            6677789999999  8899986543    34455689999999999885

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.01  E-value=8.8e-11  Score=97.25  Aligned_cols=132  Identities=12%  Similarity=0.107  Sum_probs=70.0

Q ss_pred             CccEEECCCCCCcccCCcccC-CCCCCCEeeCc--C----CCCCCCc-----chhhcCCCCCCeeeccCCcCCCccchhh
Q 048618            2 SLTKLILRGNQLTGRLPTEIG-SFKELEYLDLS--A----NRFNNSV-----PKSLGSLLKLHYLSLSNNQFVQELPKEL   69 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~L~--~----n~i~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~   69 (207)
                      +|+.|++..|.+++.....+. .+++|+.|+++  +    +.++...     +..+..+++|+.|++++ .++......+
T Consensus       373 ~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l  451 (594)
T 2p1m_B          373 KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYI  451 (594)
T ss_dssp             TCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHH
T ss_pred             hHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHH
Confidence            344454444454433333332 35566666665  2    3333111     11134456666666655 4443333333


Q ss_pred             hC-CCCCCEEecCCCCCCCchhHHh-hcCCCCCEEeCCCCcCCCCcc-ccccCCCCCCEEECCCCcCc
Q 048618           70 EK-LVQLSELDLSHNFLGGELLSQI-CNMESLEKLNLSHNNLSGSIP-NCFEGMHGLSVIDISDNQLQ  134 (207)
Q Consensus        70 ~~-l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~  134 (207)
                      .. +++|+.|++++|.+++.....+ ..+++|+.|++++|.+++... .....+++|+.|++++|+++
T Consensus       452 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          452 GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             HHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             HHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            33 6667777777777665444444 456777777777777653322 23344667777777777663

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.96  E-value=6e-11  Score=98.22  Aligned_cols=133  Identities=14%  Similarity=0.153  Sum_probs=91.1

Q ss_pred             CCCCCCEeeCcCCCCCCCcchhhc-CCCCCCeeecc--C----CcCCCc-----cchhhhCCCCCCEEecCCCCCCCchh
Q 048618           23 SFKELEYLDLSANRFNNSVPKSLG-SLLKLHYLSLS--N----NQFVQE-----LPKELEKLVQLSELDLSHNFLGGELL   90 (207)
Q Consensus        23 ~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~l~--~----n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~   90 (207)
                      ++++|+.|.+..+.+++.....+. .+++|+.|+++  +    +.++..     .+..+..+++|+.|++++ .+++..+
T Consensus       370 ~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~  448 (594)
T 2p1m_B          370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF  448 (594)
T ss_dssp             HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred             hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence            367777777777777655444454 47888888888  3    444421     223356788899999977 6666655


Q ss_pred             HHhhc-CCCCCEEeCCCCcCCCCccccc-cCCCCCCEEECCCCcCcccCCC--CcccCCCCcccccCCCC
Q 048618           91 SQICN-MESLEKLNLSHNNLSGSIPNCF-EGMHGLSVIDISDNQLQGPVPN--STAFRNAPVEALEGNKE  156 (207)
Q Consensus        91 ~~~~~-l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~l~l~~n~~~~~~~~--~~~~~~~~~~~~~~n~~  156 (207)
                      ..+.. +++|+.|++++|.+++.....+ ..+++|+.|++++|+++.....  ...++.+..+.+.+++.
T Consensus       449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            66654 8899999999999876555444 6789999999999998543221  23356677777766654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.92  E-value=2e-08  Score=79.61  Aligned_cols=149  Identities=11%  Similarity=0.073  Sum_probs=81.6

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCC---------------------c
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNN---------------------Q   60 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n---------------------~   60 (207)
                      +|+.+++.+|.++.+...+|. +.+|+.+.+..+ +.......|.++++|+.+++..+                     .
T Consensus       181 ~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~  258 (401)
T 4fdw_A          181 NLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNG  258 (401)
T ss_dssp             TCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETT
T ss_pred             cCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeCCC
Confidence            577888887777755555554 466777766633 44455556666666666666543                     2


Q ss_pred             CCCccchhhhCCCCCCEEecCCCCCC-----CchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcc
Q 048618           61 FVQELPKELEKLVQLSELDLSHNFLG-----GELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQG  135 (207)
Q Consensus        61 l~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~  135 (207)
                      +......+|.++++|+.+.+.+|.+.     ......|..+.+|+.+.+.+ .++.....+|..+.+|+.+.+..+ ++.
T Consensus       259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~  336 (401)
T 4fdw_A          259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQ  336 (401)
T ss_dssp             CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred             ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence            33333445556666666666555443     23445555666666666653 354444556666666666666443 332


Q ss_pred             cCCCCcccCCCCcccccCC
Q 048618          136 PVPNSTAFRNAPVEALEGN  154 (207)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~n  154 (207)
                      .....+..-.+..+.+.+|
T Consensus       337 I~~~aF~~~~L~~l~l~~n  355 (401)
T 4fdw_A          337 INFSAFNNTGIKEVKVEGT  355 (401)
T ss_dssp             ECTTSSSSSCCCEEEECCS
T ss_pred             EcHHhCCCCCCCEEEEcCC
Confidence            2222222114555555554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.89  E-value=1.9e-09  Score=84.26  Aligned_cols=130  Identities=16%  Similarity=0.209  Sum_probs=65.3

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhc--CCCCCCeeeccC--CcCCCc-----cchhh--h
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLG--SLLKLHYLSLSN--NQFVQE-----LPKEL--E   70 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~l~~--n~l~~~-----~~~~~--~   70 (207)
                      +|+.|.+++|.-. ..+. + .+++|+.|.+..|.+.......+.  .+++|+.|+|+.  +...+.     +...+  .
T Consensus       173 ~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~  249 (362)
T 2ra8_A          173 LLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKD  249 (362)
T ss_dssp             TCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTT
T ss_pred             CCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcC
Confidence            4555555555211 1222 2 255666666665555433222333  466677666642  111110     11112  1


Q ss_pred             CCCCCCEEecCCCCCCCchhHHhh---cCCCCCEEeCCCCcCCCCc----cccccCCCCCCEEECCCCcCc
Q 048618           71 KLVQLSELDLSHNFLGGELLSQIC---NMESLEKLNLSHNNLSGSI----PNCFEGMHGLSVIDISDNQLQ  134 (207)
Q Consensus        71 ~l~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~l~l~~n~~~  134 (207)
                      .+++|+.|++.+|.+.+..+..+.   .+++|++|+|+.|.++...    +..+..+++|+.|++++|.++
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            356677777777666543333333   3566777777777666432    223344567777777777664

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.86  E-value=1.3e-08  Score=80.59  Aligned_cols=131  Identities=11%  Similarity=0.130  Sum_probs=97.5

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcC---------------------CCCCCCcchhhcCCCCCCeeeccCCc
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSA---------------------NRFNNSVPKSLGSLLKLHYLSLSNNQ   60 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~---------------------n~i~~~~~~~~~~l~~L~~L~l~~n~   60 (207)
                      +|+.+.+..+ ++.+...+|.++.+|+.+.+..                     +.+.......|.++++|+.+++.++.
T Consensus       204 ~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~  282 (401)
T 4fdw_A          204 GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGST  282 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSC
T ss_pred             ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCcc
Confidence            4555566533 4445555666666666665543                     23444556778899999999998887


Q ss_pred             CC-----CccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcc
Q 048618           61 FV-----QELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQG  135 (207)
Q Consensus        61 l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~  135 (207)
                      +.     ...+..|.++++|+.+.+.+ .++......|.++.+|+.+.+..+ ++.....+|..+ +|+.+++.+|....
T Consensus       283 ~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~  359 (401)
T 4fdw_A          283 FNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ  359 (401)
T ss_dssp             CCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred             ccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence            64     45677899999999999994 577677788999999999999665 665677889999 99999999997654


Q ss_pred             c
Q 048618          136 P  136 (207)
Q Consensus       136 ~  136 (207)
                      .
T Consensus       360 l  360 (401)
T 4fdw_A          360 V  360 (401)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.83  E-value=9.4e-10  Score=82.15  Aligned_cols=67  Identities=27%  Similarity=0.310  Sum_probs=34.4

Q ss_pred             CCCCCCEEecCCCCCCC--chhHHhhcCCCCCEEeCCCCcCCCC-ccccccCCCCCCEEECCCCcCcccCC
Q 048618           71 KLVQLSELDLSHNFLGG--ELLSQICNMESLEKLNLSHNNLSGS-IPNCFEGMHGLSVIDISDNQLQGPVP  138 (207)
Q Consensus        71 ~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~l~l~~n~~~~~~~  138 (207)
                      ++++|+.|+|++|++++  .++..+..+++|+.|+|++|.+++. ..+.+..+ +|+.|++++|++++..|
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccC
Confidence            45556666666666654  2234444556666666666666543 11222222 56666666666654433

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.68  E-value=3.1e-08  Score=73.96  Aligned_cols=106  Identities=28%  Similarity=0.297  Sum_probs=73.5

Q ss_pred             cCCCCCCCE--eeCcCCCCCCCcch----hhcCCCCCCeeeccCCcCCC--ccchhhhCCCCCCEEecCCCCCCCc-hhH
Q 048618           21 IGSFKELEY--LDLSANRFNNSVPK----SLGSLLKLHYLSLSNNQFVQ--ELPKELEKLVQLSELDLSHNFLGGE-LLS   91 (207)
Q Consensus        21 ~~~l~~L~~--L~L~~n~i~~~~~~----~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~-~~~   91 (207)
                      +...+.|..  ++++.|... ..+.    ...++++|+.|+|++|++.+  .++..+..+++|+.|+|++|.+++. ...
T Consensus       137 l~~dp~L~~~~l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~  215 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELD  215 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGG
T ss_pred             cCCCcchhhcCccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhh
Confidence            334444554  556666432 2222    22467899999999999987  3457778899999999999999865 122


Q ss_pred             HhhcCCCCCEEeCCCCcCCCCcc-------ccccCCCCCCEEEC
Q 048618           92 QICNMESLEKLNLSHNNLSGSIP-------NCFEGMHGLSVIDI  128 (207)
Q Consensus        92 ~~~~l~~L~~L~l~~n~l~~~~~-------~~~~~~~~L~~l~l  128 (207)
                      .+..+ +|+.|+|++|.+++..|       ..+..+++|+.||-
T Consensus       216 ~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          216 KIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             GGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred             hcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence            33334 89999999999986544       34677899987763

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.59  E-value=4.7e-08  Score=68.19  Aligned_cols=82  Identities=12%  Similarity=0.128  Sum_probs=35.6

Q ss_pred             CCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCc-CCCccchhhhCC----CCCCEEecCCCC-CCCchhHHhhcCCCC
Q 048618           26 ELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ-FVQELPKELEKL----VQLSELDLSHNF-LGGELLSQICNMESL   99 (207)
Q Consensus        26 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~l~~n~-l~~~~~~~~~~l~~L   99 (207)
                      .|+.|++++|.++...-..+..+++|+.|++++|. ++...-..+..+    ++|++|++++|. +++.....+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            45555555555444333334444555555555542 332222222222    234555554442 444333444444445


Q ss_pred             CEEeCCCC
Q 048618          100 EKLNLSHN  107 (207)
Q Consensus       100 ~~L~l~~n  107 (207)
                      +.|+++++
T Consensus       142 ~~L~L~~c  149 (176)
T 3e4g_A          142 KYLFLSDL  149 (176)
T ss_dssp             CEEEEESC
T ss_pred             CEEECCCC
Confidence            55555444

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.58  E-value=2.9e-08  Score=77.48  Aligned_cols=130  Identities=21%  Similarity=0.254  Sum_probs=90.4

Q ss_pred             CCccEEECCCCCCcccCCcccC--CCCCCCEeeCcC--CCCCCC-----cchhh--cCCCCCCeeeccCCcCCCccchhh
Q 048618            1 NSLTKLILRGNQLTGRLPTEIG--SFKELEYLDLSA--NRFNNS-----VPKSL--GSLLKLHYLSLSNNQFVQELPKEL   69 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~--~l~~L~~L~L~~--n~i~~~-----~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~   69 (207)
                      ++|+.|++..+.++......+.  .+++|+.|+|+.  +...+.     +...+  ..+++|+.|++++|.+....+..+
T Consensus       193 ~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l  272 (362)
T 2ra8_A          193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF  272 (362)
T ss_dssp             TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHH
T ss_pred             CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHH
Confidence            4789999999888754444443  789999999863  221111     11223  247899999999998865444443


Q ss_pred             h---CCCCCCEEecCCCCCCCchhHHh----hcCCCCCEEeCCCCcCCCCccccccC-CCCCCEEECCCCc
Q 048618           70 E---KLVQLSELDLSHNFLGGELLSQI----CNMESLEKLNLSHNNLSGSIPNCFEG-MHGLSVIDISDNQ  132 (207)
Q Consensus        70 ~---~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~~~-~~~L~~l~l~~n~  132 (207)
                      .   .+++|++|+++.|.+.+..+..+    ..+++|+.|++++|.++......+.. +  ...+++++++
T Consensus       273 a~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          273 LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             HhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            3   47899999999999986544333    45799999999999998655454543 3  3557887776

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.57  E-value=3.7e-08  Score=68.72  Aligned_cols=85  Identities=11%  Similarity=0.149  Sum_probs=70.7

Q ss_pred             CCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCC-CCCchhHHhhcC----CCCCEEeCCCCc-CCCCccccccCCCC
Q 048618           49 LKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNF-LGGELLSQICNM----ESLEKLNLSHNN-LSGSIPNCFEGMHG  122 (207)
Q Consensus        49 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~l~~n~-l~~~~~~~~~~~~~  122 (207)
                      .+|+.||++++.++...-..+..+++|++|+|++|. +++..-..+..+    ++|++|++++|. +|...-..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            479999999999887666677899999999999995 777666667664    479999999985 88665566788999


Q ss_pred             CCEEECCCCcC
Q 048618          123 LSVIDISDNQL  133 (207)
Q Consensus       123 L~~l~l~~n~~  133 (207)
                      |+.|++++++-
T Consensus       141 L~~L~L~~c~~  151 (176)
T 3e4g_A          141 LKYLFLSDLPG  151 (176)
T ss_dssp             CCEEEEESCTT
T ss_pred             CCEEECCCCCC
Confidence            99999999863

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.24  E-value=1.9e-06  Score=61.17  Aligned_cols=113  Identities=19%  Similarity=0.224  Sum_probs=78.6

Q ss_pred             cCCCCCCCEeeCcCC-CCCCC----cchhhcCCCCCCeeeccCCcCCCc----cchhhhCCCCCCEEecCCCCCCCchhH
Q 048618           21 IGSFKELEYLDLSAN-RFNNS----VPKSLGSLLKLHYLSLSNNQFVQE----LPKELEKLVQLSELDLSHNFLGGELLS   91 (207)
Q Consensus        21 ~~~l~~L~~L~L~~n-~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~   91 (207)
                      +.+-+.|++|+|++| .|...    +...+..-+.|+.|+|++|.+...    +.+.+..-..|++|+|++|.+.+....
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            355678889999885 66542    344456667889999999988643    444555667899999999988765443


Q ss_pred             ----HhhcCCCCCEEeCCCC---cCCC----CccccccCCCCCCEEECCCCcC
Q 048618           92 ----QICNMESLEKLNLSHN---NLSG----SIPNCFEGMHGLSVIDISDNQL  133 (207)
Q Consensus        92 ----~~~~l~~L~~L~l~~n---~l~~----~~~~~~~~~~~L~~l~l~~n~~  133 (207)
                          .+..-..|+.|+|++|   .+..    .+.+.+...++|+.|+++.|.+
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence                3444567999999765   3332    2445677778899998887754

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.23  E-value=7e-06  Score=64.71  Aligned_cols=116  Identities=12%  Similarity=0.156  Sum_probs=92.0

Q ss_pred             cccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHh
Q 048618           14 TGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQI   93 (207)
Q Consensus        14 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~   93 (207)
                      +.+...+|.++..|+.+.+..+... .....|.+...|+.+.+. +.+.......|.++.+|+.+.+..+ ++.....+|
T Consensus       254 ~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF  330 (394)
T 4gt6_A          254 ARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAF  330 (394)
T ss_dssp             EEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTT
T ss_pred             eEcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHh
Confidence            3345567888999999998766543 666778889999999986 4466666778999999999999765 665667788


Q ss_pred             hcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcC
Q 048618           94 CNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQL  133 (207)
Q Consensus        94 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~  133 (207)
                      .++.+|+.+.+..+ ++.....+|.++.+|+.+++.++..
T Consensus       331 ~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~  369 (394)
T 4gt6_A          331 AGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS  369 (394)
T ss_dssp             TTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred             hCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence            89999999999755 6656678999999999999988754

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.23  E-value=6.3e-06  Score=64.51  Aligned_cols=108  Identities=12%  Similarity=0.119  Sum_probs=46.3

Q ss_pred             cccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCC
Q 048618           19 TEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMES   98 (207)
Q Consensus        19 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~   98 (207)
                      .++..+.+++.+.+..+ +.......|.+...|+.+.+..+ ++......|.++.+|+.+.+..+ +.......|..+.+
T Consensus       211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~  287 (379)
T 4h09_A          211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN  287 (379)
T ss_dssp             TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred             cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccc
Confidence            33444445555544332 22233334444445555544433 33333334444444444444332 22233334444444


Q ss_pred             CCEEeCCCCcCCCCccccccCCCCCCEEECC
Q 048618           99 LEKLNLSHNNLSGSIPNCFEGMHGLSVIDIS  129 (207)
Q Consensus        99 L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~  129 (207)
                      |+.+.+.++.++.....+|.++.+|+.+.+.
T Consensus       288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             CCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred             cccccccccccceehhhhhcCCCCCCEEEcC
Confidence            5555544444443334444444445544443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.20  E-value=6.5e-06  Score=64.89  Aligned_cols=125  Identities=13%  Similarity=0.174  Sum_probs=91.1

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +|+.+.+..+... +...+|.++..|+.+.+. +.+.......|.++.+|+.+++..+ ++.....+|.++.+|+.+.+.
T Consensus       266 ~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip  342 (394)
T 4gt6_A          266 YLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIP  342 (394)
T ss_dssp             SCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred             cccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEEC
Confidence            4667777665443 667889999999999996 4455567778999999999999764 666667889999999999997


Q ss_pred             CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcC
Q 048618           82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQL  133 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~  133 (207)
                      .+ ++.....+|.++.+|+.+++.++...   -..+....+|+.+.+..+.+
T Consensus       343 ~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          343 SS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred             cc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence            55 66677789999999999999887543   24566778888888776644

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.15  E-value=3.2e-06  Score=60.04  Aligned_cols=110  Identities=17%  Similarity=0.252  Sum_probs=81.6

Q ss_pred             CCccEEECCCC-CCccc----CCcccCCCCCCCEeeCcCCCCCCCc----chhhcCCCCCCeeeccCCcCCCc----cch
Q 048618            1 NSLTKLILRGN-QLTGR----LPTEIGSFKELEYLDLSANRFNNSV----PKSLGSLLKLHYLSLSNNQFVQE----LPK   67 (207)
Q Consensus         1 ~~L~~L~l~~n-~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~~~   67 (207)
                      +.|+.|+|++| .|...    +.+++..-.+|+.|+|++|.+....    ...+..-+.|+.|+|++|.+...    +.+
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~  120 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR  120 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence            36899999996 88743    4566777899999999999998543    34455668899999999999754    334


Q ss_pred             hhhCCCCCCEEecCCC---CCCCc----hhHHhhcCCCCCEEeCCCCcCC
Q 048618           68 ELEKLVQLSELDLSHN---FLGGE----LLSQICNMESLEKLNLSHNNLS  110 (207)
Q Consensus        68 ~~~~l~~L~~L~l~~n---~l~~~----~~~~~~~l~~L~~L~l~~n~l~  110 (207)
                      .+..-..|++|+|++|   .+...    +...+..-+.|+.|+++.|.+.
T Consensus       121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            4555678999999876   34432    3345566789999999877653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.08  E-value=1.5e-05  Score=62.77  Aligned_cols=123  Identities=15%  Similarity=0.093  Sum_probs=59.6

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +|+.+.+... ++.+...++.++..++.+.+..+... .....|.....++.+....+.+   ....|..+.+|+.+.+.
T Consensus       231 ~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~  305 (394)
T 4fs7_A          231 GVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLL  305 (394)
T ss_dssp             CCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEEC
T ss_pred             CCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccc
Confidence            3455555433 23344566777777777777665432 3444455555555554443322   12334445555555554


Q ss_pred             CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCC
Q 048618           82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDN  131 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n  131 (207)
                      .+ ++.....+|.++.+|+.+++..+ ++.....+|.++.+|+.+.+..+
T Consensus       306 ~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          306 DS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             TT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             cc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence            33 33333344445555555555432 33333444555555555555433

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.05  E-value=1.4e-05  Score=62.45  Aligned_cols=126  Identities=13%  Similarity=0.091  Sum_probs=99.9

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +++.+.+..+ +..+...++.++..|+.+.+..+ +.......|.+...|+.+.+..+ +.......|.++.+|+.+.+.
T Consensus       218 ~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~  294 (379)
T 4h09_A          218 NLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMD  294 (379)
T ss_dssp             SCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEEC
T ss_pred             ccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccccccc
Confidence            4556666544 44466778899999999999766 55566778889999999998654 555666789999999999999


Q ss_pred             CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCC
Q 048618           82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDN  131 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n  131 (207)
                      ++.++......|.++.+|+.+.+..+ ++.....+|.++.+|+.+.+..+
T Consensus       295 ~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          295 NSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             CTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             ccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            98888777788999999999999765 66566778999999998888654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.95  E-value=1.6e-05  Score=52.67  Aligned_cols=61  Identities=18%  Similarity=0.192  Sum_probs=42.9

Q ss_pred             EEecCCCCCC-CchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCC
Q 048618           77 ELDLSHNFLG-GELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPN  139 (207)
Q Consensus        77 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  139 (207)
                      .++.+++.++ ..+|..+  ..+++.|+|++|.|+...+..|..+++|+.|++++|++.|.+..
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l   73 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL   73 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence            5666676665 1233221  23578888888888876677788888888888888888877664

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.75  E-value=0.00028  Score=55.53  Aligned_cols=121  Identities=16%  Similarity=0.119  Sum_probs=68.2

Q ss_pred             ccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCC
Q 048618            3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSH   82 (207)
Q Consensus         3 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   82 (207)
                      ++.+.+..+... ....+|..+..++.+......+   ....|....+|+.+.+..+ +......+|.++.+|+.+++..
T Consensus       255 l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~  329 (394)
T 4fs7_A          255 LESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY  329 (394)
T ss_dssp             CCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT
T ss_pred             ceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCC
Confidence            444555444332 4455566666666666554432   2234556666666666543 4444455566666666666654


Q ss_pred             CCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCC
Q 048618           83 NFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISD  130 (207)
Q Consensus        83 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~  130 (207)
                      + ++.....+|.++.+|+.+.+..+ ++.....+|.++.+|+.+++..
T Consensus       330 ~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          330 L-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             T-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred             c-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence            3 44444556666666666666555 4444455666666666666643

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.41  E-value=0.00045  Score=45.64  Aligned_cols=34  Identities=26%  Similarity=0.240  Sum_probs=15.5

Q ss_pred             CCeeeccCCcCCCccchhhhCCCCCCEEecCCCC
Q 048618           51 LHYLSLSNNQFVQELPKELEKLVQLSELDLSHNF   84 (207)
Q Consensus        51 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   84 (207)
                      |+.|+|++|+++...++.|..+++|+.|+|++|.
T Consensus        33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            4444444444444444444444444444444443

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=95.09  E-value=0.032  Score=28.96  Aligned_cols=7  Identities=29%  Similarity=0.491  Sum_probs=3.0

Q ss_pred             ehHHHHH
Q 048618          184 IVFPVLG  190 (207)
Q Consensus       184 ~~~~~~~  190 (207)
                      |.+++++
T Consensus        13 IA~gVVg   19 (44)
T 2ks1_B           13 IATGMVG   19 (44)
T ss_dssp             STHHHHH
T ss_pred             EEeehhH
Confidence            4444443

>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A

Probab=93.75  E-value=0.029  Score=28.16  Aligned_cols=12  Identities=25%  Similarity=0.346  Sum_probs=7.1

Q ss_pred             HHHHHHhhhhcC
Q 048618          196 MALIAIFILRKR  207 (207)
Q Consensus       196 ~~~~~~~~~~rr  207 (207)
                      ++.+++|+||||
T Consensus        27 i~~l~~~~~rrr   38 (38)
T 2k1k_A           27 LLGILVFRSRRA   38 (38)
T ss_dssp             HHHHHHHHHCCC
T ss_pred             HHHHHHHHeecC
Confidence            334456777776

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=93.55  E-value=0.042  Score=28.41  Aligned_cols=9  Identities=33%  Similarity=0.678  Sum_probs=4.2

Q ss_pred             HHHhhhhcC
Q 048618          199 IAIFILRKR  207 (207)
Q Consensus       199 ~~~~~~~rr  207 (207)
                      +.+|++|||
T Consensus        31 ~~~~~RRR~   39 (44)
T 2jwa_A           31 FGILIKRRQ   39 (44)
T ss_dssp             HHHHHHHHC
T ss_pred             HHhheehhh
Confidence            344555543

>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}

Probab=92.42  E-value=0.11  Score=26.38  Aligned_cols=25  Identities=28%  Similarity=0.409  Sum_probs=9.8

Q ss_pred             eehHHHHHHHHHHH-HH-HHHhhhhcC
Q 048618          183 AIVFPVLGAVFVSM-AL-IAIFILRKR  207 (207)
Q Consensus       183 ~~~~~~~~~~~~~~-~~-~~~~~~~rr  207 (207)
                      .+++++++.+++++ ++ +.++++|||
T Consensus        14 ~I~~~vv~Gv~ll~~iv~~~~~~~rRr   40 (41)
T 2k9y_A           14 AVIGGVAVGVVLLLVLAGVGFFIHRRR   40 (41)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred             EEEeehhHHHHHHHHHHHHheeEeeec
Confidence            34444444333333 33 334444443

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=92.01  E-value=0.15  Score=26.30  Aligned_cols=8  Identities=38%  Similarity=0.492  Sum_probs=3.7

Q ss_pred             eehHHHHH
Q 048618          183 AIVFPVLG  190 (207)
Q Consensus       183 ~~~~~~~~  190 (207)
                      .|.+++++
T Consensus        11 aIA~gVVg   18 (44)
T 2l2t_A           11 LIAAGVIG   18 (44)
T ss_dssp             HHHHHHHH
T ss_pred             eEEEeehH
Confidence            34444444

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=91.95  E-value=0.14  Score=26.49  Aligned_cols=25  Identities=16%  Similarity=0.293  Sum_probs=11.6

Q ss_pred             eEeehHHHHHHHHHHHHHHHHhhhhc
Q 048618          181 WFAIVFPVLGAVFVSMALIAIFILRK  206 (207)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~r  206 (207)
                      ..+++++++++++++..++ +|++||
T Consensus        13 A~gVVgGv~~v~ii~~~~~-~~~RRR   37 (44)
T 2l2t_A           13 AAGVIGGLFILVIVGLTFA-VYVRRK   37 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHHTT
T ss_pred             EEeehHHHHHHHHHHHHHH-HHhhhh
Confidence            4455555555554443333 333333

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=88.06  E-value=0.53  Score=24.25  Aligned_cols=18  Identities=28%  Similarity=0.624  Sum_probs=6.8

Q ss_pred             ehHHHHHHHHHHHHHHHHh
Q 048618          184 IVFPVLGAVFVSMALIAIF  202 (207)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~  202 (207)
                      +++++++ +++++++...+
T Consensus        14 Ia~~vVG-vll~vi~~l~~   31 (44)
T 2jwa_A           14 IISAVVG-ILLVVVLGVVF   31 (44)
T ss_dssp             HHHHHHH-HHHHHHHHHHH
T ss_pred             hHHHHHH-HHHHHHHHHHH
Confidence            3343443 33333333333

>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1

Probab=86.91  E-value=0.18  Score=24.57  Aligned_cols=9  Identities=44%  Similarity=0.874  Sum_probs=4.8

Q ss_pred             HHHhhhhcC
Q 048618          199 IAIFILRKR  207 (207)
Q Consensus       199 ~~~~~~~rr  207 (207)
                      +++|++|||
T Consensus        27 ~~~~iRRr~   35 (35)
T 1iij_A           27 VGILIKRRR   35 (35)
T ss_dssp             TTHHHHHCC
T ss_pred             hheEEeecC
Confidence            345555554

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=83.94  E-value=3.5  Score=25.36  Aligned_cols=49  Identities=12%  Similarity=0.121  Sum_probs=30.4

Q ss_pred             CCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCC
Q 048618           10 GNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNN   59 (207)
Q Consensus        10 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n   59 (207)
                      +..++.+-..+|.++..|+.+.+..+ ++.+....|.+..+|+.+.+...
T Consensus         5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            34555556667777777777776654 33355566777777777666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	207
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-12
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-07
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	6e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	5e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	8e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	3e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-04

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 70.4 bits (171), Expect = 5e-15
 Identities = 33/150 (22%), Positives = 61/150 (40%), Gaps = 28/150 (18%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVP------------------- 42
           +LT L L  NQ++   P  +    +L  L L AN+ +N  P                   
Sbjct: 242 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED 299

Query: 43  -KSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEK 101
              + +L  L YL+L  N      P  +  L +L  L  ++N +    +S + N+ ++  
Sbjct: 300 ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINW 355

Query: 102 LNLSHNNLSGSIPNCFEGMHGLSVIDISDN 131
           L+  HN +S   P     +  ++ + ++D 
Sbjct: 356 LSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 68.1 bits (165), Expect = 3e-14
 Identities = 37/158 (23%), Positives = 61/158 (38%), Gaps = 28/158 (17%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
            +L +L L GNQL       + S   L  LDL+ N+ +N  P  L  L KL  L L  NQ
Sbjct: 219 TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 274

Query: 61  FVQELP--------------------KELEKLVQLSELDLSHNFLGGELLSQICNMESLE 100
                P                      +  L  L+ L L  N +    +S + ++  L+
Sbjct: 275 ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQ 332

Query: 101 KLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVP 138
           +L  ++N +S    +    +  ++ +    NQ+    P
Sbjct: 333 RLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 47  SLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSH 106
           +L +     L        + +    L Q++ L      +  + +  +  + +L ++N S+
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSN 75

Query: 107 NNLSGSIP 114
           N L+   P
Sbjct: 76  NQLTDITP 83

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 8e-04
 Identities = 14/86 (16%), Positives = 38/86 (44%), Gaps = 6/86 (6%)

Query: 23  SFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSH 82
           +  E     L      ++V ++   L ++  L       ++ +   +E L  L++++ S+
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLG-IKSI-DGVEYLNNLTQINFSN 75

Query: 83  NFLGGELLSQICNMESLEKLNLSHNN 108
           N L    ++ + N+  L  + +++N 
Sbjct: 76  NQLTD--ITPLKNLTKLVDILMNNNQ 99

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 64.8 bits (156), Expect = 4e-13
 Identities = 19/69 (27%), Positives = 34/69 (49%)

Query: 92  QICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEAL 151
           ++   ++L  L+L +N + G++P     +  L  +++S N L G +P     +   V A 
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAY 298

Query: 152 EGNKELCGG 160
             NK LCG 
Sbjct: 299 ANNKCLCGS 307

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 58.2 bits (139), Expect = 6e-11
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 8   LRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELP 66
           LR N++ G LP  +   K L  L++S N     +P   G+L +    + +NN+ +   P
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 54.8 bits (130), Expect = 1e-09
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 79  DLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQL 133
           DL +N + G L   +  ++ L  LN+S NNL G IP     +    V   ++N+ 
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 53.2 bits (126), Expect = 3e-09
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 24  FKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHN 83
            K L  LDL  NR   ++P+ L  L  LH L++S N    E+P +   L +      ++N
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANN 301

Query: 84  -FLGGELLS 91
             L G  L 
Sbjct: 302 KCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.8 bits (99), Expect = 1e-05
 Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 3/124 (2%)

Query: 3   LTKLILRGNQLTGR--LPTEIGSFKELEYLDLSAN-RFNNSVPKSLGSLLKLHYLSLSNN 59
           +  L L G  L     +P+ + +   L +L +         +P ++  L +LHYL +++ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 60  QFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEG 119
                +P  L ++  L  LD S+N L G L   I ++ +L  +    N +SG+IP+ +  
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 120 MHGL 123
              L
Sbjct: 172 FSKL 175

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 41.3 bits (95), Expect = 4e-05
 Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 3/117 (2%)

Query: 27  LEYLDLSANRFNN--SVPKSLGSLLKLHYLSLSNN-QFVQELPKELEKLVQLSELDLSHN 83
           +  LDLS         +P SL +L  L++L +      V  +P  + KL QL  L ++H 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 84  FLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS 140
            + G +   +  +++L  L+ S+N LSG++P     +  L  I    N++ G +P+S
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.2 bits (87), Expect = 4e-04
 Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRF 37
            L  L +  N L G +P + G+ +  +    + N+ 
Sbjct: 269 FLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKC 303

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (146), Expect = 8e-12
 Identities = 15/101 (14%), Positives = 34/101 (33%), Gaps = 5/101 (4%)

Query: 26  ELEYLDLSANRFNNSVPKSLGSLLK-LHYLSLSNNQF----VQELPKELEKLVQLSELDL 80
           +++ LD+     +++    L  LL+    + L +        +++   L     L+EL+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 81  SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
             N LG   +  +          +   +L            
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 103

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (127), Expect = 3e-09
 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 9/80 (11%)

Query: 50  KLHYLSLSNNQF----VQELPKELEKLVQLSELDLSHNFLGGELLSQIC-----NMESLE 100
            L  L L++          L   L     L ELDLS+N LG   + Q+          LE
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 101 KLNLSHNNLSGSIPNCFEGM 120
           +L L     S  + +  + +
Sbjct: 430 QLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (125), Expect = 5e-09
 Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 9/83 (10%)

Query: 1   NSLTKLILRGNQLTGR----LPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLK-----L 51
           + L  L L    ++      L   + +   L  LDLS N   ++    L   ++     L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 52  HYLSLSNNQFVQELPKELEKLVQ 74
             L L +  + +E+   L+ L +
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 1e-07
 Identities = 9/68 (13%), Positives = 26/68 (38%), Gaps = 5/68 (7%)

Query: 73  VQLSELDLSHNFLGGELLSQIC-NMESLEKLNLSHNNLSG----SIPNCFEGMHGLSVID 127
           + +  LD+    L     +++   ++  + + L    L+      I +       L+ ++
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 128 ISDNQLQG 135
           +  N+L  
Sbjct: 62  LRSNELGD 69

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 1e-07
 Identities = 16/74 (21%), Positives = 23/74 (31%), Gaps = 5/74 (6%)

Query: 49  LKLHYLSLSNNQFVQELPKEL-EKLVQLSELDLSHNFLGGELLSQIC----NMESLEKLN 103
           L +  L +   +       EL   L Q   + L    L       I        +L +LN
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 104 LSHNNLSGSIPNCF 117
           L  N L     +C 
Sbjct: 62  LRSNELGDVGVHCV 75

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 6e-07
 Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 15/97 (15%)

Query: 23  SFKELEYLDLSANRFNNSVPKSLGSLLK----LHYLSLSNNQFVQELPKELEKLVQ---- 74
               L  L L+    ++S   SL + L     L  L LSNN        +L + V+    
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 75  -LSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLS 110
            L +L L   +   E+       + L+ L     +L 
Sbjct: 427 LLEQLVLYDIYWSEEM------EDRLQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 3e-05
 Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 9/69 (13%)

Query: 2  SLTKLILRGNQLTGR----LPTEIGSFKELEYLDLSANRFNNSVPKSLGSLL-----KLH 52
              + L    LT      + + +     L  L+L +N   +     +   L     K+ 
Sbjct: 28 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQ 87

Query: 53 YLSLSNNQF 61
           LSL N   
Sbjct: 88 KLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (80), Expect = 0.003
 Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 4/47 (8%)

Query: 91  SQICNMESLEKLNLSHNNLSG----SIPNCFEGMHGLSVIDISDNQL 133
                   L  L L+  ++S     S+       H L  +D+S+N L
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 409

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 2e-10
 Identities = 33/159 (20%), Positives = 54/159 (33%), Gaps = 4/159 (2%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
            +L  L L+ N L             L +L L  NR ++   ++   L  L  L L  N+
Sbjct: 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188

Query: 61  FVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGM 120
                P     L +L  L L  N L       +  + +L+ L L+ N             
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLW 247

Query: 121 HGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCG 159
             L     S +++   +P         ++ L  N +L G
Sbjct: 248 AWLQKFRGSSSEVPCSLPQR--LAGRDLKRLAAN-DLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 2e-07
 Identities = 32/149 (21%), Positives = 45/149 (30%), Gaps = 1/149 (0%)

Query: 11  NQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELE 70
            QL    P        L  L L         P     L  L YL L +N           
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 71  KLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISD 130
            L  L+ L L  N +          + SL++L L  N ++   P+ F  +  L  + +  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 131 N-QLQGPVPNSTAFRNAPVEALEGNKELC 158
           N     P       R      L  N  +C
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVC 239

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 2e-06
 Identities = 25/165 (15%), Positives = 46/165 (27%), Gaps = 28/165 (16%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
                       L   +P  I +    + + L  NR ++    S  +   L  L L +N 
Sbjct: 11  EPKVTTSCPQQGLQ-AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV 67

Query: 61  FVQEL-------------------------PKELEKLVQLSELDLSHNFLGGELLSQICN 95
             +                           P     L +L  L L    L          
Sbjct: 68  LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG 127

Query: 96  MESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS 140
           + +L+ L L  N L     + F  +  L+ + +  N++      +
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.0 bits (131), Expect = 7e-10
 Identities = 27/154 (17%), Positives = 46/154 (29%), Gaps = 3/154 (1%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
            L  +      L  ++P ++    +   LDL  N+          +L  LH L L NN+ 
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
            +  P     LV+L  L LS N L          ++ L         +  S+ N    M 
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 122 GLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNK 155
            + +                  +      +    
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 161

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.9 bits (128), Expect = 2e-09
 Identities = 33/149 (22%), Positives = 51/149 (34%), Gaps = 10/149 (6%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
            L+ + +    +T       G    L  L L  N+       SL  L  L  L LS N  
Sbjct: 151 KLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
                  L     L EL L++N L         + + ++ + L +NN+S    N F    
Sbjct: 208 SAVDNGSLANTPHLRELHLNNNKLVKVPGGL-ADHKYIQVVYLHNNNISAIGSNDFCPPG 266

Query: 122 G------LSVIDISDNQLQGPVPNSTAFR 144
                   S + +  N +Q      + FR
Sbjct: 267 YNTKKASYSGVSLFSNPVQYWEIQPSTFR 295

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.7 bits (117), Expect = 5e-08
 Identities = 28/135 (20%), Positives = 52/135 (38%), Gaps = 4/135 (2%)

Query: 6   LILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQEL 65
           L     + +G         K+L Y+ ++             SL +LH   L  N+  +  
Sbjct: 131 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH---LDGNKITKVD 187

Query: 66  PKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSV 125
              L+ L  L++L LS N +       + N   L +L+L++N L   +P        + V
Sbjct: 188 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQV 246

Query: 126 IDISDNQLQGPVPNS 140
           + + +N +     N 
Sbjct: 247 VYLHNNNISAIGSND 261

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.3 bits (116), Expect = 8e-08
 Identities = 28/157 (17%), Positives = 57/157 (36%), Gaps = 4/157 (2%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
            L +L L  NQL         + +EL   +    +   SV   L  ++ +  L  +  + 
Sbjct: 80  KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKS 138

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
                   + + +LS + ++   +            SL +L+L  N ++       +G++
Sbjct: 139 SGIENGAFQGMKKLSYIRIADTNITTIPQG---LPPSLTELHLDGNKITKVDAASLKGLN 195

Query: 122 GLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELC 158
            L+ + +S N +      S A      E    N +L 
Sbjct: 196 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 232

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.1 bits (100), Expect = 9e-06
 Identities = 29/154 (18%), Positives = 61/154 (39%), Gaps = 5/154 (3%)

Query: 4   TKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNS--VPKSLGSLLKLHYLSLSNNQF 61
            +L +  N++T    +      ++  ++L  N   +S     +   + KL Y+ +++   
Sbjct: 103 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 162

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
              +P+ L     L+EL L  N +     + +  + +L KL LS N++S           
Sbjct: 163 -TTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 219

Query: 122 GLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNK 155
            L  + +++N+L          +   V  L  N 
Sbjct: 220 HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 253

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.0 bits (120), Expect = 2e-08
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 11/95 (11%)

Query: 32  LSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLS 91
              N  +N +         L  L++SNN+   ELP    +L     L  S N L     +
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKL-IELPALPPRL---ERLIASFNHL-----A 317

Query: 92  QICN-MESLEKLNLSHNNLSGSIPNCFEGMHGLSV 125
           ++    ++L++L++ +N L    P+  E +  L +
Sbjct: 318 EVPELPQNLKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.4 bits (116), Expect = 8e-08
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 9/74 (12%)

Query: 2   SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
           SL +L +  N+L   LP        LE L  S N     VP+   +L +LH   +  N  
Sbjct: 285 SLEELNVSNNKLI-ELPALPPR---LERLIASFNHL-AEVPELPQNLKQLH---VEYNPL 336

Query: 62  VQELPKELEKLVQL 75
            +E P   E +  L
Sbjct: 337 -REFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.1 bits (110), Expect = 4e-07
 Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 14/99 (14%)

Query: 8   LRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPK 67
              N  +  + +       LE L++S N+    +P        L  L  S N    E+P+
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKL-IELPALPPR---LERLIASFNHL-AEVPE 321

Query: 68  ELEKLVQLSELDLSHNFLGGELLSQICN-MESLEKLNLS 105
             +    L +L + +N      L +  +  ES+E L ++
Sbjct: 322 LPQN---LKQLHVEYNP-----LREFPDIPESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.4 bits (103), Expect = 3e-06
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 8/84 (9%)

Query: 52  HYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSG 111
                  N    E+    +    L EL++S+N L  EL +       LE+L  S N+L+ 
Sbjct: 263 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL-IELPALPPR---LERLIASFNHLA- 317

Query: 112 SIPNCFEGMHGLSVIDISDNQLQG 135
            +P        L  + +  N L+ 
Sbjct: 318 EVPEL---PQNLKQLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 2e-04
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 10/74 (13%)

Query: 62  VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMH 121
           V  L   L++  Q  EL+L++  L   L     +   LE L  S N+L+  +P       
Sbjct: 29  VSRLRDCLDR--QAHELELNNLGL-SSLPELPPH---LESLVASCNSLT-ELPELP---Q 78

Query: 122 GLSVIDISDNQLQG 135
            L  + + +N L+ 
Sbjct: 79  SLKSLLVDNNNLKA 92

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 4e-04
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 6/69 (8%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
               +L L    L+  LP        LE L  S N     +P+   S LK   +  +N +
Sbjct: 38  RQAHELELNNLGLS-SLPELPPH---LESLVASCNSL-TELPELPQS-LKSLLVDNNNLK 91

Query: 61  FVQELPKEL 69
            + +LP  L
Sbjct: 92  ALSDLPPLL 100

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.0 bits (111), Expect = 7e-08
 Identities = 29/107 (27%), Positives = 41/107 (38%), Gaps = 6/107 (5%)

Query: 6   LILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQEL 65
           L L    LT      +     + +LDLS NR     P +L +L  L  L  S+N      
Sbjct: 3   LHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD 59

Query: 66  PKELEKLVQLSELDLSHNFL-GGELLSQICNMESLEKLNLSHNNLSG 111
                  +Q  EL L +N L     +  + +   L  LNL  N+L  
Sbjct: 60  GVANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.6 bits (110), Expect = 1e-07
 Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 6/108 (5%)

Query: 29  YLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGE 88
            L L+      +V   L  LL + +L LS+N+     P  L  L  L  L  S N    E
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNA--LE 56

Query: 89  LLSQICNMESLEKLNLSHNNL-SGSIPNCFEGMHGLSVIDISDNQLQG 135
            +  + N+  L++L L +N L   +          L ++++  N L  
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 9e-08
 Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 5/100 (5%)

Query: 30  LDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ-FVQELPKELEKLVQLSELDLSHNFLGGE 88
           LDL+    +   P   G LL    ++    + F+ +   E     ++  +DLS++ +   
Sbjct: 5   LDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 89  LLSQI-CNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVID 127
            L  I      L+ L+L    LS  I N       L  ++
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 4e-04
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 2/85 (2%)

Query: 2   SLTKLILRGNQLTGRLPT-EIGSFKELEYLDLSANRFN-NSVPKSLGSLLKLHYLSLSNN 59
           S   +  R  +     P  E  S   ++++DLS +    +++   L    KL  LSL   
Sbjct: 22  SQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 81

Query: 60  QFVQELPKELEKLVQLSELDLSHNF 84
           +    +   L K   L  L+LS   
Sbjct: 82  RLSDPIVNTLAKNSNLVRLNLSGCS 106

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (110), Expect = 2e-07
 Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 7/136 (5%)

Query: 26  ELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFL 85
             + LDL   R        L +      L+  ++     L    E + +L  L+LS+N L
Sbjct: 23  SQQALDLKGLRS----DPDLVAQNIDVVLNRRSSMAAT-LRIIEENIPELLSLNLSNNRL 77

Query: 86  GG--ELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAF 143
               ++ S +    +L+ LNLS N L             L  + +  N L     + + +
Sbjct: 78  YRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY 137

Query: 144 RNAPVEALEGNKELCG 159
            +A  E       L G
Sbjct: 138 ISAIRERFPKLLRLDG 153

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 6e-04
 Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 3/104 (2%)

Query: 16  RLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF--VQELPKELEKLV 73
           R   ++ +      L+   +    ++     ++ +L  L+LSNN+   + ++   ++K  
Sbjct: 33  RSDPDLVAQNIDVVLNRR-SSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAP 91

Query: 74  QLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCF 117
            L  L+LS N L  E          LE+L L  N+LS +  +  
Sbjct: 92  NLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQS 135

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.5 bits (103), Expect = 4e-06
 Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 5/90 (5%)

Query: 49  LKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQIC----NMESLEKLNL 104
             L   +++     + +   L +   + E+ LS N +G E    +     + + LE    
Sbjct: 8   KSLKLDAITTED-EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 105 SHNNLSGSIPNCFEGMHGLSVIDISDNQLQ 134
           S            E +  L    +   +L 
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLH 96

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 3e-04
 Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 5/53 (9%)

Query: 71  KLVQLSELDLSHNFLGGELLSQIC-----NMESLEKLNLSHNNLSGSIPNCFE 118
           + + L  L L +N +  + +  +       M  L  L L+ N  S       E
Sbjct: 271 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDE 323

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 4e-04
 Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 19/91 (20%)

Query: 8   LRGNQLTGRLPTEIG------SFKELEYLDLSANRFNNSVPKSLGSLL-----KLHYLSL 56
           L    L+ R    +           L+ L L  N       ++L +++      L +L L
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309

Query: 57  SNNQF------VQELPKELEK--LVQLSELD 79
           + N+F      V E+ +        +L ELD
Sbjct: 310 NGNRFSEEDDVVDEIREVFSTRGRGELDELD 340

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 35.2 bits (79), Expect = 0.004
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 7/67 (10%)

Query: 44  SLGSLLKLHYLSLSNNQFVQELPKEL-----EKLVQLSELDLSHNFLG--GELLSQICNM 96
           S    + L  L L  N+   +  + L     EK+  L  L+L+ N      +++ +I  +
Sbjct: 268 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV 327

Query: 97  ESLEKLN 103
            S     
Sbjct: 328 FSTRGRG 334

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 5e-06
 Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 5/102 (4%)

Query: 32  LSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLS 91
           L+A     +      + ++   L L   +    +      L Q   +D S N +    L 
Sbjct: 3   LTAELIEQA--AQYTNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEI--RKLD 57

Query: 92  QICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQL 133
               +  L+ L +++N +        + +  L+ + +++N L
Sbjct: 58  GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 99

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 8e-05
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 80  LSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQ 134
           L+   +  E  +Q  N     +L+L    +   I N    +     ID SDN+++
Sbjct: 3   LTAELI--EQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR 54

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (78), Expect = 0.003
 Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 8/124 (6%)

Query: 3   LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFV 62
             +L LRG ++   +     +  + + +D S N            L +L  L ++NN+  
Sbjct: 20  DRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTLLVNNNRIC 76

Query: 63  QELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHG 122
           +      + L  L+EL L++N      L ++ +++ L  L           P   +  + 
Sbjct: 77  RIGEGLDQALPDLTELILTNNS-----LVELGDLDPLASLKSLTYLCILRNPVTNKKHYR 131

Query: 123 LSVI 126
           L VI
Sbjct: 132 LYVI 135

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 6e-06
 Identities = 38/179 (21%), Positives = 54/179 (30%), Gaps = 21/179 (11%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQ 60
              T L L  N L       +  +  L  L+L               +L    LS +  Q
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90

Query: 61  FVQE---------------------LPKELEKLVQLSELDLSHNFLGGELLSQICNMESL 99
            +                           L  L +L EL L  N L       +     L
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150

Query: 100 EKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELC 158
           EKL+L++NNL+        G+  L  + + +N L             P   L GN  LC
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 2e-05
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 3/60 (5%)

Query: 2  SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQF 61
          S  ++      LT  LP ++   K+   L LS N        +L    +L  L+L   + 
Sbjct: 11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 3e-05
 Identities = 24/109 (22%), Positives = 36/109 (33%), Gaps = 3/109 (2%)

Query: 27  LEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEK-LVQLSELDLSHNFL 85
              L  + +         L     L  L + N Q +Q L     + L +L  L +  + L
Sbjct: 10  SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 86  GGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQ 134
                        L +LNLS N L  S+         L  + +S N L 
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (79), Expect = 0.002
 Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 2/109 (1%)

Query: 51  LHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQIC-NMESLEKLNLSHNNL 109
              L  + +  + +    L     L+EL + +      L  +    +  L  L +  + L
Sbjct: 10  SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 110 SGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELC 158
               P+ F     LS +++S N L+     +    +     L GN   C
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHC 117

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 7e-05
 Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 5/64 (7%)

Query: 69  LEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDI 128
           L  L +L+ L    N +    +S + ++ +L +++L +N +S   P        L ++ +
Sbjct: 169 LANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

Query: 129 SDNQ 132
           + NQ
Sbjct: 225 T-NQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 4/74 (5%)

Query: 33  SANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQ 92
           S      S    L +L KL  L   +N+     P  L  L  L E+ L +N +    +S 
Sbjct: 157 SIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD--VSP 212

Query: 93  ICNMESLEKLNLSH 106
           + N  +L  + L++
Sbjct: 213 LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 2e-04
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 1   NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSN 58
           + LT L    N+++   P  + S   L  + L  N+ ++  P  L +   L  ++L+N
Sbjct: 173 SKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 8e-04
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 21  IGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL 80
           + +  +L  L    N+ ++  P  L SL  L  + L NNQ     P  L     L  + L
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

Query: 81  SH 82
           ++
Sbjct: 225 TN 226

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 2e-04
 Identities = 9/81 (11%), Positives = 18/81 (22%)

Query: 52  HYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSG 111
             L L+ N   +                  +N L                L++S   +  
Sbjct: 156 VILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 215

Query: 112 SIPNCFEGMHGLSVIDISDNQ 132
                 E +  L      + +
Sbjct: 216 LPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.001
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 15  GRLPTEI-GSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQEL 65
             LP ++         LD+S  R ++     L +L KL   S  N + +  L
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTL 241

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.2 bits (87), Expect = 2e-04
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 4/100 (4%)

Query: 42  PKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEK 101
            K    L +L  L+L +NQ    +P   E L  L+ L+   +             E L K
Sbjct: 95  NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN-LASNPFNCNCHLAWFAEWLRK 153

Query: 102 LNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNST 141
            +L+        P     +  + + D+  ++ +    NS 
Sbjct: 154 KSLNGGAARCGAP---SKVRDVQIKDLPHSEFKCSSENSE 190

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	207
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.87
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.84
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.83
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.82
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.78
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.77
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.74
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.73
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.67
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.65
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.64
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.58
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.57
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.54
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.52
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.5
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.5
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.45
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.4
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.32
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.23
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.22
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.05
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	99.01
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.0
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.94
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.93
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.79
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.68
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.6
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.52
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.49
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.1
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.08

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.87  E-value=2.5e-22  Score=142.51  Aligned_cols=158  Identities=23%  Similarity=0.300  Sum_probs=132.3

Q ss_pred             ccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCC-CcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNN-SVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         3 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      .+.++.+++.++ .+|..+.  +++++|+|++|.|+. ..+..|.++++|+.|++++|.+....++.|..+++|++|+++
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            357889999999 6676653  789999999999976 456678999999999999999999999999999999999999


Q ss_pred             CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCCCCCCC
Q 048618           82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGV  161 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~~c~~~  161 (207)
                      +|+++...+..|.++++|++|+|++|.+++..++.|..+++|+.+++++|++.+.++.......+....+..+...|..+
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p  166 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCC
Confidence            99999888888999999999999999999888899999999999999999998877654333334444455566667655


Q ss_pred             CC
Q 048618          162 KG  163 (207)
Q Consensus       162 ~~  163 (207)
                      ..
T Consensus       167 ~~  168 (192)
T d1w8aa_         167 SK  168 (192)
T ss_dssp             TT
T ss_pred             hh
Confidence            43

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.87  E-value=2.3e-22  Score=152.84  Aligned_cols=70  Identities=27%  Similarity=0.459  Sum_probs=62.0

Q ss_pred             hhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCCCCCCCC
Q 048618           93 ICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVK  162 (207)
Q Consensus        93 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~  162 (207)
                      +..+++|+.|++++|++++.+|+.+..+++|+.|++++|+++|.+|....+..+....+.+|+.+|+.+.
T Consensus       240 ~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~pl  309 (313)
T d1ogqa_         240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL  309 (313)
T ss_dssp             CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTS
T ss_pred             cccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCC
Confidence            4456778888999999998999999999999999999999999999888888999999999999999753

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.8e-20  Score=139.29  Aligned_cols=157  Identities=27%  Similarity=0.253  Sum_probs=115.0

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCC------------------
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQ------------------   63 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~------------------   63 (207)
                      ++++|+|++|.|++..+.+|.++++|++|+|++|+++. ++ .+..+++|+.|++++|++..                  
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~  109 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF  109 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCS
T ss_pred             CCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccccccccccccccccccccccccccccc
Confidence            57788888888886666777888888888888887763 33 24556666666666666543                  


Q ss_pred             -----ccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCC
Q 048618           64 -----ELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVP  138 (207)
Q Consensus        64 -----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  138 (207)
                           ..+..+..+.+++++++++|.+....+..+..++.++.+++++|.+++..++.+..+++|+.|++++|.++...+
T Consensus       110 ~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~  189 (266)
T d1p9ag_         110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK  189 (266)
T ss_dssp             SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             cccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccCh
Confidence                 233334444555555555555655555566678889999999999998778888999999999999999995545


Q ss_pred             CCcccCCCCcccccCCCCCCCC
Q 048618          139 NSTAFRNAPVEALEGNKELCGG  160 (207)
Q Consensus       139 ~~~~~~~~~~~~~~~n~~~c~~  160 (207)
                      .......+..+.+.+|+..|++
T Consensus       190 ~~~~~~~L~~L~L~~Np~~CdC  211 (266)
T d1p9ag_         190 GFFGSHLLPFAFLHGNPWLCNC  211 (266)
T ss_dssp             TTTTTCCCSEEECCSCCBCCSG
T ss_pred             hHCCCCCCCEEEecCCCCCCCc
Confidence            5577788889999999999974

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.4e-21  Score=146.58  Aligned_cols=161  Identities=19%  Similarity=0.158  Sum_probs=117.4

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      ++|+.|++++|.+....+..+..+.+|+.+++++|.+++..+..|..+++|+.|++++|++.+..+..|..+++|+.+++
T Consensus       105 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l  184 (284)
T d1ozna_         105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL  184 (284)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhh
Confidence            36778888888877666667777788888888888887666777777788888888888887777777778888888888


Q ss_pred             CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCCCCCC
Q 048618           81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGG  160 (207)
Q Consensus        81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~~c~~  160 (207)
                      ++|++++..|..|..+++|++|++++|.+++..+..+..+++|+.+++++|++.|.++.......+.......+...|..
T Consensus       185 ~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l~~~l~~~~~~~~~~~C~~  264 (284)
T d1ozna_         185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSL  264 (284)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEE
T ss_pred             hhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccchHHHHHHHhCcCCCCceEeCC
Confidence            88888777777777888888888888888777777777888888888888888877664322222223333344455543


Q ss_pred             C
Q 048618          161 V  161 (207)
Q Consensus       161 ~  161 (207)
                      +
T Consensus       265 p  265 (284)
T d1ozna_         265 P  265 (284)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.83  E-value=6.3e-21  Score=135.14  Aligned_cols=156  Identities=21%  Similarity=0.276  Sum_probs=129.1

Q ss_pred             CccEEECCCCCCcc-cCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            2 SLTKLILRGNQLTG-RLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         2 ~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      ++++|+|++|.|+. ..+..|.++++|+.|++++|.+....+..|..+++|+.|++++|++....++.|.++++|++|+|
T Consensus        30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L  109 (192)
T d1w8aa_          30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCccccccc
Confidence            68999999999985 45677899999999999999999999999999999999999999999888999999999999999


Q ss_pred             CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccc-cccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCCCCCC
Q 048618           81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPN-CFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCG  159 (207)
Q Consensus        81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~~~c~  159 (207)
                      ++|++++..++.|..+++|++++|++|.+...... .+.  ..++...+..+.+.|..|.  .++.....++..+...|.
T Consensus       110 ~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~~c~~p~--~l~~~~l~~L~~n~l~C~  185 (192)
T d1w8aa_         110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGAPS--KVRDVQIKDLPHSEFKCS  185 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCSST--TTTTSBGGGSCTTTCCCC
T ss_pred             CCccccccCHHHhcCCcccccccccccccccccchHHHh--hhhhhhcccCCCeEeCCCh--hhcCCEeeecCHhhCcCC
Confidence            99999988888899999999999999999754322 222  2245556777888776664  345555666777777776


Q ss_pred             CC
Q 048618          160 GV  161 (207)
Q Consensus       160 ~~  161 (207)
                      ..
T Consensus       186 ~~  187 (192)
T d1w8aa_         186 SE  187 (192)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.9e-19  Score=133.63  Aligned_cols=137  Identities=29%  Similarity=0.282  Sum_probs=115.9

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      ++|++|++++|.++ ..+..+.++++|+.|++++|.+....+..+..+.+++.|++++|.+....+..+..+++++.+++
T Consensus        77 ~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l  155 (266)
T d1p9ag_          77 PVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL  155 (266)
T ss_dssp             TTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cccccccccccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccc
Confidence            35677777777776 34566777777788888777777767777778888888999999998888888889999999999


Q ss_pred             CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCC
Q 048618           81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPN  139 (207)
Q Consensus        81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  139 (207)
                      ++|++++..+..+..+++|++|+|++|.++ .+|+.+..+++|+.+++++|++.|.+..
T Consensus       156 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~~  213 (266)
T d1p9ag_         156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI  213 (266)
T ss_dssp             TTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             ccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcch
Confidence            999999888888999999999999999999 6777788899999999999999987654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.3e-18  Score=130.28  Aligned_cols=150  Identities=21%  Similarity=0.263  Sum_probs=126.5

Q ss_pred             CCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhH
Q 048618           12 QLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLS   91 (207)
Q Consensus        12 ~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~   91 (207)
                      .+....+..|.++++|++|++++|.+....+..+....+|+.+++++|.+++..++.|..+++|+.|++++|.+++..+.
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~  171 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER  171 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             ccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchh
Confidence            33344466677888899999999988877777788888899999999999887788888889999999999999877788


Q ss_pred             HhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-cccCCCCcccccCCCCCCCCC
Q 048618           92 QICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-TAFRNAPVEALEGNKELCGGV  161 (207)
Q Consensus        92 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~n~~~c~~~  161 (207)
                      .+..+++|+.+++++|.+++..|..+..+++|+.+++++|.+....+.. .....+..+.+.+|+..|++.
T Consensus       172 ~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             hhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc
Confidence            8889999999999999999888899999999999999999998766554 466778888999999988753

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.77  E-value=5.1e-19  Score=134.16  Aligned_cols=139  Identities=27%  Similarity=0.534  Sum_probs=127.1

Q ss_pred             CccEEECCCCCCcc--cCCcccCCCCCCCEeeCcC-CCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEE
Q 048618            2 SLTKLILRGNQLTG--RLPTEIGSFKELEYLDLSA-NRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSEL   78 (207)
Q Consensus         2 ~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   78 (207)
                      .++.|+|+++.+.+  .+|.++.++++|++|+|++ |++++.+|..|.++++|++|++++|++.+..+..+..+..|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            47889999999987  4789999999999999987 78988999999999999999999999999889999999999999


Q ss_pred             ecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCC-CEEECCCCcCcccCCCC
Q 048618           79 DLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGL-SVIDISDNQLQGPVPNS  140 (207)
Q Consensus        79 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L-~~l~l~~n~~~~~~~~~  140 (207)
                      ++++|.+.+..|..+..++.++.+++++|.+++.+|+.+..+..+ +.+++++|.+++..+..
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~  193 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT  193 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG
T ss_pred             ccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccc
Confidence            999999988889999999999999999999998899888888775 88999999998776654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=5.5e-18  Score=116.45  Aligned_cols=123  Identities=21%  Similarity=0.234  Sum_probs=63.0

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      ++++|+|++|.|+. ++..+..+++|+.|++++|.+.. ++ .|..+++|+.|++++|++....+..+..+++|++|+++
T Consensus        19 ~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~   95 (162)
T d1a9na_          19 RDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   95 (162)
T ss_dssp             SCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             cCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCCCccccccccccccceec
Confidence            34555666665553 34444555556666666655552 22 35555555566666555554444444555555566665


Q ss_pred             CCCCCCch-hHHhhcCCCCCEEeCCCCcCCCCc---cccccCCCCCCEEE
Q 048618           82 HNFLGGEL-LSQICNMESLEKLNLSHNNLSGSI---PNCFEGMHGLSVID  127 (207)
Q Consensus        82 ~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~~~L~~l~  127 (207)
                      +|++.... ...+..+++|+.+++++|.++...   +..+..+++|+.||
T Consensus        96 ~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          96 NNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             SCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            55554321 133445555555555555554221   12344555555544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=4.2e-17  Score=107.00  Aligned_cols=118  Identities=29%  Similarity=0.307  Sum_probs=89.2

Q ss_pred             cEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCC
Q 048618            4 TKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHN   83 (207)
Q Consensus         4 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   83 (207)
                      |+|++++|.++ .++ .+..+++|++|++++|.+. .+|..|..+++|+.|++++|.++.. | .+..+++|+++++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCC
Confidence            57889999988 344 4788889999999999887 5666788888999999999988754 3 4778888889999888


Q ss_pred             CCCCch-hHHhhcCCCCCEEeCCCCcCCCC---ccccccCCCCCCEE
Q 048618           84 FLGGEL-LSQICNMESLEKLNLSHNNLSGS---IPNCFEGMHGLSVI  126 (207)
Q Consensus        84 ~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~l  126 (207)
                      ++++.. ...+..+++|+.+++++|.++..   .......+++++.+
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            887543 35677788888888888888643   22344456776654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.70  E-value=2.6e-16  Score=118.60  Aligned_cols=155  Identities=21%  Similarity=0.247  Sum_probs=105.7

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCcc---------------
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQEL---------------   65 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------------   65 (207)
                      +++++|+|++|.|+...+.+|.++++|++|++++|.+....|..|.++++|+.|++++|++....               
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n  110 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHEN  110 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSS
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhcccc
Confidence            36889999999999666678999999999999999999877888999999999999888653110               


Q ss_pred             --------------------------------chhhhCCCCCCEEecCCC---------------------CCCCchhHH
Q 048618           66 --------------------------------PKELEKLVQLSELDLSHN---------------------FLGGELLSQ   92 (207)
Q Consensus        66 --------------------------------~~~~~~l~~L~~L~l~~n---------------------~l~~~~~~~   92 (207)
                                                      +..+..+++|+.+++++|                     ......+..
T Consensus       111 ~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~  190 (305)
T d1xkua_         111 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAAS  190 (305)
T ss_dssp             CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGG
T ss_pred             chhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcccCCccCEEECCCCcCCCCChhH
Confidence                                            012233333444444444                     433344455


Q ss_pred             hhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCC
Q 048618           93 ICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNK  155 (207)
Q Consensus        93 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~  155 (207)
                      +..++.++.|++++|.+++..+..+..+++|+.|++++|.++...+....++.+..+.+.+|.
T Consensus       191 ~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~  253 (305)
T d1xkua_         191 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN  253 (305)
T ss_dssp             GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC
T ss_pred             hhccccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEECCCCc
Confidence            556666777777777776666666677777777777777776543333555666666666654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=1.5e-15  Score=107.68  Aligned_cols=144  Identities=24%  Similarity=0.348  Sum_probs=113.4

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      ++++.|++++|.++..  +.+..+++|++|++++|.+++..+  +.++++|+.|++++|.+... + .+.+++.|+.+++
T Consensus        40 ~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~l  113 (199)
T d2omxa2          40 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-T-PLANLTNLTGLTL  113 (199)
T ss_dssp             TTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEEEC
T ss_pred             cCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCcccccccccccccccc-c-ccccccccccccc
Confidence            3678999999998843  347889999999999999986543  88999999999999987653 2 4778899999999


Q ss_pred             CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCC
Q 048618           81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNK  155 (207)
Q Consensus        81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~  155 (207)
                      ++|.....  ..+..+++|+.+++++|.+.. . +.+..+++++.+++.+|.++.. +....++.+..+++.+|.
T Consensus       114 ~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l-~~l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         114 FNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL-KPLANLTTLERLDISSNK  183 (199)
T ss_dssp             CSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC-GGGTTCTTCCEEECCSSC
T ss_pred             cccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC-ccccCCCCCCEEECCCCC
Confidence            99888653  346778899999999998874 2 3577888999999999988754 334566777888887775

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.5e-16  Score=109.20  Aligned_cols=114  Identities=16%  Similarity=0.123  Sum_probs=97.8

Q ss_pred             ccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCC
Q 048618           20 EIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESL   99 (207)
Q Consensus        20 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L   99 (207)
                      .+.+...+++|+|++|+|+. ++..+..+++|+.|++++|.+...  +.+..+++|++|++++|+++...+..+..+++|
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccc
Confidence            46788899999999999984 566778899999999999999754  357889999999999999987666667789999


Q ss_pred             CEEeCCCCcCCCCcc-ccccCCCCCCEEECCCCcCccc
Q 048618          100 EKLNLSHNNLSGSIP-NCFEGMHGLSVIDISDNQLQGP  136 (207)
Q Consensus       100 ~~L~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~  136 (207)
                      +.|++++|.++.... ..+..+++|+.+++++|+++..
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~  127 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK  127 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccccc
Confidence            999999999985432 5688999999999999999744

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=5.8e-16  Score=105.54  Aligned_cols=140  Identities=18%  Similarity=0.127  Sum_probs=103.3

Q ss_pred             CCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCC-cCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCC
Q 048618           22 GSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNN-QFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLE  100 (207)
Q Consensus        22 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  100 (207)
                      +.+...+.++.+++.+. ..|..+..+++|+.|++.+| .++...+..|.++++|+.|++++|+++...+..|..+++|+
T Consensus         5 C~c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~   83 (156)
T d2ifga3           5 CCPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS   83 (156)
T ss_dssp             SCCSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred             CCcCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccc
Confidence            34455667888888877 56677888899999999766 47777778899999999999999999987788899999999


Q ss_pred             EEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCc--ccCCCCcccccCCCCCCCCCCC
Q 048618          101 KLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNST--AFRNAPVEALEGNKELCGGVKG  163 (207)
Q Consensus       101 ~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~--~~~~~~~~~~~~n~~~c~~~~~  163 (207)
                      .|+|++|.++...+..+... .|+.|++++|++.|.+....  .+.......+..+...|.++..
T Consensus        84 ~L~Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~C~C~~~~l~~~~~~~~~~~~~~~~~C~~p~~  147 (156)
T d2ifga3          84 RLNLSFNALESLSWKTVQGL-SLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGP  147 (156)
T ss_dssp             EEECCSSCCSCCCSTTTCSC-CCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSC
T ss_pred             ceeccCCCCcccChhhhccc-cccccccCCCcccCCchHHHHHHHHHhccCccCcCCcEECcChH
Confidence            99999999986555666544 69999999999987764421  1111122222345556665543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=2e-15  Score=107.82  Aligned_cols=143  Identities=22%  Similarity=0.329  Sum_probs=104.8

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +|+.|++++|.++...  .+..+++|++|++++|.+++..  .+..+++|+.|++++|+++. ++ .+..+++|+.++++
T Consensus        47 ~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred             CccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccccc
Confidence            5788889998888532  3778888999999999888543  36788889999998888865 33 47778888888888


Q ss_pred             CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccccCCC
Q 048618           82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEALEGNK  155 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~n~  155 (207)
                      +|.+...  ..+..++.++.+++++|.+++.  ..+..+++|+.+++++|+++.. +....++.+..+++.+|.
T Consensus       121 ~~~~~~~--~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i-~~l~~l~~L~~L~Ls~N~  189 (210)
T d1h6ta2         121 HNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNH  189 (210)
T ss_dssp             TSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GGGTTCTTCCEEECCSSC
T ss_pred             ccccccc--cccccccccccccccccccccc--cccccccccccccccccccccc-ccccCCCCCCEEECCCCC
Confidence            8887642  3466777888888888887642  3456677888888888887753 334455667777776664

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=5.1e-15  Score=104.81  Aligned_cols=125  Identities=30%  Similarity=0.426  Sum_probs=99.2

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      ++|++|++++|.+++..|  +.++++|++|++++|.+... + .+.++++|+.|++++|.....  ..+..+++|+.+++
T Consensus        62 ~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l  135 (199)
T d2omxa2          62 NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-T-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLEL  135 (199)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEEC
T ss_pred             CCcCcCccccccccCccc--ccCCcccccccccccccccc-c-ccccccccccccccccccccc--cccchhhhhHHhhh
Confidence            478899999999885433  78899999999999888743 3 478888999999988887643  34678888999999


Q ss_pred             CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcc
Q 048618           81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQG  135 (207)
Q Consensus        81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~  135 (207)
                      ++|++...  +.+..+++++.|++.+|.+++..  .+..+++|+.|++++|+++.
T Consensus       136 ~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         136 SSNTISDI--SALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             CSSCCCCC--GGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC
T ss_pred             hhhhhccc--ccccccccccccccccccccCCc--cccCCCCCCEEECCCCCCCC
Confidence            99988642  35778889999999999887542  37888899999999998874

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.65  E-value=1.7e-15  Score=114.01  Aligned_cols=151  Identities=22%  Similarity=0.276  Sum_probs=101.9

Q ss_pred             cEEECCCCCCc--ccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            4 TKLILRGNQLT--GRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         4 ~~L~l~~n~i~--~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      ..++...|...  ...+..+..+++|+.+++.+|.+.. ++..+  .++|+.|++++|......+..|.+++.++.|+++
T Consensus       127 ~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s  203 (305)
T d1xkua_         127 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS  203 (305)
T ss_dssp             CEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECC
T ss_pred             cccccccccccccCCCccccccccccCccccccCCccc-cCccc--CCccCEEECCCCcCCCCChhHhhccccccccccc
Confidence            44555555333  3445567777778888888877763 34332  4677788888877777777777777778888888


Q ss_pred             CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC-------cccCCCCcccccCC
Q 048618           82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS-------TAFRNAPVEALEGN  154 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-------~~~~~~~~~~~~~n  154 (207)
                      +|.+.+..+..+..+++|+.|+|++|.++ .+|+.+..+++|+.|++++|+++......       .....+..+.+.+|
T Consensus       204 ~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N  282 (305)
T d1xkua_         204 FNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN  282 (305)
T ss_dssp             SSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred             cccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCC
Confidence            88777766777777778888888888777 44667777788888888888776543222       22345556666777


Q ss_pred             CCCC
Q 048618          155 KELC  158 (207)
Q Consensus       155 ~~~c  158 (207)
                      +..+
T Consensus       283 ~~~~  286 (305)
T d1xkua_         283 PVQY  286 (305)
T ss_dssp             SSCG
T ss_pred             cCcc
Confidence            6543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=2.7e-15  Score=98.17  Aligned_cols=104  Identities=27%  Similarity=0.305  Sum_probs=90.1

Q ss_pred             CEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCC
Q 048618           28 EYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHN  107 (207)
Q Consensus        28 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  107 (207)
                      +.|++++|+++. ++ .+..+++|+.|++++|.+.. +|..+..+++|+.|++++|.+++. + .+..+++|+++++++|
T Consensus         1 R~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccCc-chhhhhhhhccccccccccccccc-C-ccccccccCeEECCCC
Confidence            579999999984 44 48899999999999999974 566789999999999999999854 4 4889999999999999


Q ss_pred             cCCCCc-cccccCCCCCCEEECCCCcCccc
Q 048618          108 NLSGSI-PNCFEGMHGLSVIDISDNQLQGP  136 (207)
Q Consensus       108 ~l~~~~-~~~~~~~~~L~~l~l~~n~~~~~  136 (207)
                      .++... ...+..+++|+.+++++|+++..
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcC
Confidence            998653 35788999999999999999754

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=2.9e-14  Score=101.72  Aligned_cols=140  Identities=29%  Similarity=0.405  Sum_probs=112.4

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      ++|++|++++|.+++..  .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|.+...  ..+..++.++.+++
T Consensus        68 ~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~~~--~~l~~l~~l~~l~~  141 (210)
T d1h6ta2          68 PNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYL  141 (210)
T ss_dssp             TTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEEC
T ss_pred             CCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-ccccccccccccccccccccc--cccccccccccccc
Confidence            47999999999998643  36889999999999999985 44 588899999999999987542  45788999999999


Q ss_pred             CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCcccCCCCcccc
Q 048618           81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNSTAFRNAPVEAL  151 (207)
Q Consensus        81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~  151 (207)
                      ++|.+++.  ..+..+++|+.+++++|.+++. + .+..+++|+.|++++|+++. ++....++.+..+++
T Consensus       142 ~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-l~~l~~l~~L~~L~L  207 (210)
T d1h6ta2         142 GNNKITDI--TVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLEL  207 (210)
T ss_dssp             CSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEEE
T ss_pred             cccccccc--cccccccccccccccccccccc-c-cccCCCCCCEEECCCCCCCC-ChhhcCCCCCCEEEc
Confidence            99998753  3567789999999999999854 3 37889999999999999974 344445555555544

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=6.3e-14  Score=101.02  Aligned_cols=145  Identities=21%  Similarity=0.324  Sum_probs=100.4

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +|+.|++.+|.|+. ++ .+..+++|++|++++|.+.+..+  +..+++++.+++++|.++..  ..+..+++|+.++++
T Consensus        42 ~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l~l~  115 (227)
T d1h6ua2          42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLT  115 (227)
T ss_dssp             TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECT
T ss_pred             CcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeecccc--cccccccccccccccccccc--ccccccccccccccc
Confidence            57888888888874 33 47888888888888888875433  77788888888888776532  235566777777777


Q ss_pred             CCCCCCch--------------------hHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCCc
Q 048618           82 HNFLGGEL--------------------LSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNST  141 (207)
Q Consensus        82 ~n~l~~~~--------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~  141 (207)
                      ++...+..                    ...+..+++|+.|++++|.++...  .+..+++|+.|++++|.++. ++...
T Consensus       116 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~~l~  192 (227)
T d1h6ua2         116 STQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-ISPLA  192 (227)
T ss_dssp             TSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CGGGG
T ss_pred             cccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccch--hhcccccceecccCCCccCC-Chhhc
Confidence            66544321                    122445677888888888876432  36778888888888888775 34345


Q ss_pred             ccCCCCcccccCCC
Q 048618          142 AFRNAPVEALEGNK  155 (207)
Q Consensus       142 ~~~~~~~~~~~~n~  155 (207)
                      .++.+..+++.+|.
T Consensus       193 ~l~~L~~L~Ls~N~  206 (227)
T d1h6ua2         193 SLPNLIEVHLKNNQ  206 (227)
T ss_dssp             GCTTCCEEECTTSC
T ss_pred             CCCCCCEEECcCCc
Confidence            66777777777775

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.57  E-value=3.8e-14  Score=109.34  Aligned_cols=144  Identities=26%  Similarity=0.392  Sum_probs=90.0

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccc--------------
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELP--------------   66 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------------   66 (207)
                      ++|+.|++++|.++..  +.+..+++|+.|++++|.+++..+  +..+++|+.|+++++.+.+..+              
T Consensus       219 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~  294 (384)
T d2omza2         219 TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNE  294 (384)
T ss_dssp             TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCS
T ss_pred             CCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCCccccccccccccccc
Confidence            3678888888888742  457788888888888888875433  6777888888888877654322              


Q ss_pred             ------hhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC
Q 048618           67 ------KELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS  140 (207)
Q Consensus        67 ------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~  140 (207)
                            ..+..+++++++++++|++++..  .+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|++++..| .
T Consensus       295 n~l~~~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~-l  369 (384)
T d2omza2         295 NQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP-L  369 (384)
T ss_dssp             SCCSCCGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG-G
T ss_pred             cccccccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh-h
Confidence                  22444556666666666665432  25556666666666666653 22 35666666666666666664433 3


Q ss_pred             cccCCCCcccccC
Q 048618          141 TAFRNAPVEALEG  153 (207)
Q Consensus       141 ~~~~~~~~~~~~~  153 (207)
                      ..++.+..+++.+
T Consensus       370 ~~l~~L~~L~L~~  382 (384)
T d2omza2         370 ANLTRITQLGLND  382 (384)
T ss_dssp             TTCTTCSEEECCC
T ss_pred             ccCCCCCEeeCCC
Confidence            3344444444443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.4e-14  Score=97.38  Aligned_cols=106  Identities=21%  Similarity=0.173  Sum_probs=91.8

Q ss_pred             ccEEECCCCCCcccCCcccCCCCCCCEeeCcCC-CCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            3 LTKLILRGNQLTGRLPTEIGSFKELEYLDLSAN-RFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         3 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      .+.++..++.+. ..|..+..+++|++|++++| .++...+..|.++++|+.|++++|++....+.+|..+++|++|+|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            456788888887 57888999999999999876 4887777889999999999999999998889999999999999999


Q ss_pred             CCCCCCchhHHhhcCCCCCEEeCCCCcCC
Q 048618           82 HNFLGGELLSQICNMESLEKLNLSHNNLS  110 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  110 (207)
                      +|+++...+..+.. .+|+.|+|++|.+.
T Consensus        89 ~N~l~~l~~~~~~~-~~l~~L~L~~Np~~  116 (156)
T d2ifga3          89 FNALESLSWKTVQG-LSLQELVLSGNPLH  116 (156)
T ss_dssp             SSCCSCCCSTTTCS-CCCCEEECCSSCCC
T ss_pred             CCCCcccChhhhcc-ccccccccCCCccc
Confidence            99999655555544 47999999999986

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.52  E-value=3.6e-13  Score=96.97  Aligned_cols=142  Identities=23%  Similarity=0.352  Sum_probs=108.7

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccc--------------
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELP--------------   66 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------------   66 (207)
                      ++|++|++++|.+.+..|  +.++++++++++++|.++. ++ .+..+++|+.++++++...+..+              
T Consensus        63 ~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~-i~-~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~  138 (227)
T d1h6ua2          63 NNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL  138 (227)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCS
T ss_pred             CCCcEeecCCceeecccc--ccccccccccccccccccc-cc-cccccccccccccccccccccchhccccchhhhhchh
Confidence            578999999999986543  8899999999999998874 33 57889999999998887543211              


Q ss_pred             ------hhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCCcCcccCCCC
Q 048618           67 ------KELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVPNS  140 (207)
Q Consensus        67 ------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~  140 (207)
                            ..+..+++|++|++++|.+.+..  .+..+++|+.|++++|.+++. + .+..+++|+.|++++|+++... ..
T Consensus       139 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~-~l  213 (227)
T d1h6ua2         139 NQITNISPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDVS-PL  213 (227)
T ss_dssp             SCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBCG-GG
T ss_pred             hhhchhhhhccccccccccccccccccch--hhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCCc-cc
Confidence                  23566778999999999887543  378899999999999999854 3 3788999999999999988543 23


Q ss_pred             cccCCCCcccc
Q 048618          141 TAFRNAPVEAL  151 (207)
Q Consensus       141 ~~~~~~~~~~~  151 (207)
                      ..++.+..+++
T Consensus       214 ~~l~~L~~L~l  224 (227)
T d1h6ua2         214 ANTSNLFIVTL  224 (227)
T ss_dssp             TTCTTCCEEEE
T ss_pred             ccCCCCCEEEe
Confidence            44444444443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.50  E-value=2.2e-13  Score=105.00  Aligned_cols=122  Identities=24%  Similarity=0.375  Sum_probs=94.1

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCc--------------------chhhcCCCCCCeeeccCCcC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSV--------------------PKSLGSLLKLHYLSLSNNQF   61 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~--------------------~~~~~~l~~L~~L~l~~n~l   61 (207)
                      +|+.|++++|.+++..  .+..+++|++|+++++.+.+..                    ...+..+++++.|++++|++
T Consensus       242 ~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l  319 (384)
T d2omza2         242 NLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI  319 (384)
T ss_dssp             TCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCC
T ss_pred             ccchhccccCccCCCC--cccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCC
Confidence            5667777777766432  2566667777777666655322                    12356678899999999999


Q ss_pred             CCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCccccccCCCCCCEEECCCC
Q 048618           62 VQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDN  131 (207)
Q Consensus        62 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n  131 (207)
                      .+..  .+..+++|+.|++++|++++. + .+..+++|++|++++|++++..|  +..+++|+.|++++|
T Consensus       320 ~~l~--~l~~l~~L~~L~L~~n~l~~l-~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         320 SDIS--PVSSLTKLQRLFFANNKVSDV-S-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             SCCG--GGGGCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCc--ccccCCCCCEEECCCCCCCCC-h-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            8653  378899999999999999853 3 58899999999999999997654  889999999999987

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.50  E-value=2.7e-16  Score=111.40  Aligned_cols=131  Identities=22%  Similarity=0.253  Sum_probs=103.2

Q ss_pred             ccEEECCCC--CCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            3 LTKLILRGN--QLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         3 L~~L~l~~n--~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      ++.+++.+.  .+. .++.++..+++|++|+|++|+|+.. + .+..+++|+.|++++|.+.. ++..+..+++|++|++
T Consensus        25 ~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l  100 (198)
T d1m9la_          25 AEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWI  100 (198)
T ss_dssp             CSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEEC
T ss_pred             cceeeeecccCchh-hhhhHHhcccccceeECcccCCCCc-c-cccCCccccChhhccccccc-cccccccccccccccc
Confidence            344556554  233 4567789999999999999999854 4 58899999999999999864 4555555668999999


Q ss_pred             CCCCCCCchhHHhhcCCCCCEEeCCCCcCCCCcc-ccccCCCCCCEEECCCCcCcccCCC
Q 048618           81 SHNFLGGELLSQICNMESLEKLNLSHNNLSGSIP-NCFEGMHGLSVIDISDNQLQGPVPN  139 (207)
Q Consensus        81 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~  139 (207)
                      ++|.++..  +.+..+++|+.|++++|.++.... ..+..+++|+.|++++|++....+.
T Consensus       101 ~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  158 (198)
T d1m9la_         101 SYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             SEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCT
T ss_pred             cccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccccCccc
Confidence            99999853  357788999999999999985432 5688999999999999998765544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.45  E-value=1.1e-15  Score=108.22  Aligned_cols=127  Identities=22%  Similarity=0.267  Sum_probs=95.5

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEec
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDL   80 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   80 (207)
                      ++|++|+|++|.|+. ++ .+.++++|+.|++++|.+. .++..+..+++|+.|++++|.++..  +.+..+++|+.|++
T Consensus        48 ~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L  122 (198)
T d1m9la_          48 KACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYM  122 (198)
T ss_dssp             TTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHHHHSSEEEE
T ss_pred             cccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc--cccccccccccccc
Confidence            468899999999884 33 4788899999999999887 4555555667899999999988753  34677888999999


Q ss_pred             CCCCCCCchh-HHhhcCCCCCEEeCCCCcCCCCccc----------cccCCCCCCEEECCCCcCc
Q 048618           81 SHNFLGGELL-SQICNMESLEKLNLSHNNLSGSIPN----------CFEGMHGLSVIDISDNQLQ  134 (207)
Q Consensus        81 ~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~----------~~~~~~~L~~l~l~~n~~~  134 (207)
                      ++|.++.... ..+..+++|+.|++++|.++...+.          .+..+++|+.||  +.+++
T Consensus       123 ~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~  185 (198)
T d1m9la_         123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred             ccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence            9999875432 5678889999999999987644332          256678888775  44443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=5.1e-13  Score=96.94  Aligned_cols=134  Identities=18%  Similarity=0.188  Sum_probs=91.4

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCC-cchhhcCCCCCCeeeccC-CcCCCccchhhhCCCCCCEEe
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNS-VPKSLGSLLKLHYLSLSN-NQFVQELPKELEKLVQLSELD   79 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~   79 (207)
                      ++++|++++|.|+...+.+|.++++|++|++++|.+... .+..|.+++.++.+.+.. |++....+..|.++++|++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            688899999999876667889999999999999988754 345688888998888754 667777777888899999999


Q ss_pred             cCCCCCCCchhH-HhhcCCCCCEEeCCCCcCCCCccccccCCC-CCCEEECCCCcCcc
Q 048618           80 LSHNFLGGELLS-QICNMESLEKLNLSHNNLSGSIPNCFEGMH-GLSVIDISDNQLQG  135 (207)
Q Consensus        80 l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~l~l~~n~~~~  135 (207)
                      +++|.+....+. .+..+..+..+...++.+....+..+..++ .+..+++++|+++.
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~  167 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  167 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             cchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence            999987643221 222334444444455555433334444432 45555665555543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=3.3e-12  Score=92.50  Aligned_cols=135  Identities=21%  Similarity=0.240  Sum_probs=87.8

Q ss_pred             CCccEEECCCCCCccc-CCcccCCCCCCCEeeCcC-CCCCCCcchhhcCCCCCCeeeccCCcCCCccch-----------
Q 048618            1 NSLTKLILRGNQLTGR-LPTEIGSFKELEYLDLSA-NRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPK-----------   67 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----------   67 (207)
                      ++|++|++++|.+... .+.+|.+++.++++.+.. |++....+..|.++++|+.+++++|.+....+.           
T Consensus        53 ~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~  132 (242)
T d1xwdc1          53 GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL  132 (242)
T ss_dssp             TTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEE
T ss_pred             chhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchhhhccccccccccccccccc
Confidence            4789999999988754 456788899999998764 677777778889999999999999877543221           


Q ss_pred             --------------hhhCCC-CCCEEecCCCCCCCchhHHhhcCCCCCEE-eCCCCcCCCCccccccCCCCCCEEECCCC
Q 048618           68 --------------ELEKLV-QLSELDLSHNFLGGELLSQICNMESLEKL-NLSHNNLSGSIPNCFEGMHGLSVIDISDN  131 (207)
Q Consensus        68 --------------~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~~~~L~~l~l~~n  131 (207)
                                    .|.+++ .++.+++++|.++...+..+ ...+++.+ ++++|.++...+..+..+++|+.|++++|
T Consensus       133 ~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N  211 (242)
T d1xwdc1         133 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT  211 (242)
T ss_dssp             EEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTS
T ss_pred             ccccccccccccccccccccccceeeecccccccccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCC
Confidence                          112221 34555666666553333322 22333333 45566666444556667777777777777


Q ss_pred             cCccc
Q 048618          132 QLQGP  136 (207)
Q Consensus       132 ~~~~~  136 (207)
                      +++..
T Consensus       212 ~l~~l  216 (242)
T d1xwdc1         212 RIHSL  216 (242)
T ss_dssp             CCCCC
T ss_pred             cCCcc
Confidence            77643

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.6e-11  Score=91.17  Aligned_cols=60  Identities=15%  Similarity=0.088  Sum_probs=34.5

Q ss_pred             hcCCCCCEEeCCCC-cCCCCccccccCCCCCCEEECCCC-cCcccCC-CCcccCCCCcccccC
Q 048618           94 CNMESLEKLNLSHN-NLSGSIPNCFEGMHGLSVIDISDN-QLQGPVP-NSTAFRNAPVEALEG  153 (207)
Q Consensus        94 ~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~l~l~~n-~~~~~~~-~~~~~~~~~~~~~~~  153 (207)
                      ..+++|++|++++| .+++.....+..+++|+.|++++| .++.... .....+.+..+++.+
T Consensus       172 ~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~  234 (284)
T d2astb2         172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG  234 (284)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred             cccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeC
Confidence            34667777777765 356555666677777777777775 3433211 113344555555544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.6e-11  Score=91.17  Aligned_cols=131  Identities=22%  Similarity=0.281  Sum_probs=91.4

Q ss_pred             CCccEEECCCCCCcccCCcccCCCCCCCEeeCcCC-CCCCCc-chhhcCCCCCCeeeccCCc-CC---------------
Q 048618            1 NSLTKLILRGNQLTGRLPTEIGSFKELEYLDLSAN-RFNNSV-PKSLGSLLKLHYLSLSNNQ-FV---------------   62 (207)
Q Consensus         1 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~i~~~~-~~~~~~l~~L~~L~l~~n~-l~---------------   62 (207)
                      ++|++|++++|.+.+..+..+..+++|++|++++| .+++.. .....++++|+.|++++|. ++               
T Consensus        71 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L  150 (284)
T d2astb2          71 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI  150 (284)
T ss_dssp             CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred             CCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccccccc
Confidence            36777777777777666666777777777777775 343211 1122346667777776642 11               


Q ss_pred             -------------Cc-cchhhhCCCCCCEEecCCC-CCCCchhHHhhcCCCCCEEeCCCC-cCCCCccccccCCCCCCEE
Q 048618           63 -------------QE-LPKELEKLVQLSELDLSHN-FLGGELLSQICNMESLEKLNLSHN-NLSGSIPNCFEGMHGLSVI  126 (207)
Q Consensus        63 -------------~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~l  126 (207)
                                   .. +...+..+++|++|++++| .+++.....+..+++|++|++++| .++......+..+++|+.|
T Consensus       151 ~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L  230 (284)
T d2astb2         151 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL  230 (284)
T ss_dssp             CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             chhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEE
Confidence                         00 1122356789999999986 477677778888999999999995 6776666678889999999


Q ss_pred             ECCCC
Q 048618          127 DISDN  131 (207)
Q Consensus       127 ~l~~n  131 (207)
                      +++++
T Consensus       231 ~l~~~  235 (284)
T d2astb2         231 QVFGI  235 (284)
T ss_dssp             ECTTS
T ss_pred             eeeCC
Confidence            99987

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.05  E-value=7.9e-11  Score=89.56  Aligned_cols=113  Identities=20%  Similarity=0.304  Sum_probs=50.7

Q ss_pred             CCCCCCCEeeCcCCCCCCC-----cchhhcCCCCCCeeeccCCcCCCc----cchhhhCCCCCCEEecCCCCCCCchhHH
Q 048618           22 GSFKELEYLDLSANRFNNS-----VPKSLGSLLKLHYLSLSNNQFVQE----LPKELEKLVQLSELDLSHNFLGGELLSQ   92 (207)
Q Consensus        22 ~~l~~L~~L~L~~n~i~~~-----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~   92 (207)
                      ..+.+|++|++++|.+...     ....+...++|+.|++++|.+...    +...+..+++|++|++++|.+.+.....
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~  262 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  262 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             hhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHH
Confidence            3445555555555554421     112234445555555555554322    2233344555555555555554432222


Q ss_pred             h----h--cCCCCCEEeCCCCcCCCC----cccccc-CCCCCCEEECCCCcCc
Q 048618           93 I----C--NMESLEKLNLSHNNLSGS----IPNCFE-GMHGLSVIDISDNQLQ  134 (207)
Q Consensus        93 ~----~--~l~~L~~L~l~~n~l~~~----~~~~~~-~~~~L~~l~l~~n~~~  134 (207)
                      +    .  ....|+.|++++|.++..    +...+. ..+.|+.+++++|.+.
T Consensus       263 l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         263 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            2    1  123455555555555432    122221 3445555555555553

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=3.9e-11  Score=81.68  Aligned_cols=66  Identities=32%  Similarity=0.277  Sum_probs=33.6

Q ss_pred             cCCCCCCeeeccCCcCCCc--cchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeCCCCcCCC
Q 048618           46 GSLLKLHYLSLSNNQFVQE--LPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNLSHNNLSG  111 (207)
Q Consensus        46 ~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  111 (207)
                      ..+++|+.|++++|+++..  .+..+..+++|+.|++++|.++...+-.......|+.+++++|.++.
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            3455566666666655543  23334555556666666665554333222233345555666665543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.00  E-value=1.9e-10  Score=87.46  Aligned_cols=38  Identities=18%  Similarity=0.318  Sum_probs=17.0

Q ss_pred             CCCCCEEeCCCCcCCCC----ccccccCCCCCCEEECCCCcC
Q 048618           96 MESLEKLNLSHNNLSGS----IPNCFEGMHGLSVIDISDNQL  133 (207)
Q Consensus        96 l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~l~l~~n~~  133 (207)
                      .++|+.|++++|.++..    +...+..+++|+.|++++|.+
T Consensus       214 ~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i  255 (344)
T d2ca6a1         214 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL  255 (344)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             hhhhcccccccccccccccccccccccccccchhhhhhcCcc
Confidence            44455555555544321    222334444455555555544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.94  E-value=1.3e-08  Score=76.66  Aligned_cols=120  Identities=24%  Similarity=0.224  Sum_probs=87.9

Q ss_pred             CccEEECCCCCCcccCCcccCCCCCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecC
Q 048618            2 SLTKLILRGNQLTGRLPTEIGSFKELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLS   81 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   81 (207)
                      +++.|+|+++.++ .+|+.   .++|++|++++|+++ .+|..   ..+|+.|++++|.+... ++.   .+.|++|+++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~l-~~l---p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccchh-hhh---cccccccccc
Confidence            5789999999998 57754   578999999999998 55654   45899999999988643 221   1369999999


Q ss_pred             CCCCCCchhHHhhcCCCCCEEeCCCCcCCCCcc------------------ccccCCCCCCEEECCCCcCcc
Q 048618           82 HNFLGGELLSQICNMESLEKLNLSHNNLSGSIP------------------NCFEGMHGLSVIDISDNQLQG  135 (207)
Q Consensus        82 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------------~~~~~~~~L~~l~l~~n~~~~  135 (207)
                      +|.+.. .|. +..++.|+.++++++.++....                  ..+..++.++.+++++|....
T Consensus       107 ~n~l~~-lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         107 NNQLEK-LPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             SSCCSS-CCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS
T ss_pred             cccccc-ccc-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceecccccccccc
Confidence            999974 443 5678999999999887753211                  123445667777777776543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2e-10  Score=89.74  Aligned_cols=110  Identities=18%  Similarity=0.236  Sum_probs=72.9

Q ss_pred             CccEEECCCCCCcccC-CcccCCCCCCCEeeCcCCCCCC----CcchhhcCCCCCCeeeccCCcCCCcc----chhhh-C
Q 048618            2 SLTKLILRGNQLTGRL-PTEIGSFKELEYLDLSANRFNN----SVPKSLGSLLKLHYLSLSNNQFVQEL----PKELE-K   71 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~-~   71 (207)
                      +|+.||++++.+++.. .+.+..+++++.|+|++|.++.    .++..+...++|+.|++++|.++...    .+.+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            5788888888887532 3345667888888888887763    22444567788888888888774321    12222 1


Q ss_pred             CCCCCEEecCCCCCCCch----hHHhhcCCCCCEEeCCCCcCCC
Q 048618           72 LVQLSELDLSHNFLGGEL----LSQICNMESLEKLNLSHNNLSG  111 (207)
Q Consensus        72 l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~  111 (207)
                      ..+|++|++++|.+++..    +..+...++|+.|++++|.++.
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            246888888888876542    3445567788888888887764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=2.5e-09  Score=83.35  Aligned_cols=134  Identities=22%  Similarity=0.220  Sum_probs=89.8

Q ss_pred             CccEEECCCCCCccc----CCcccCCCCCCCEeeCcCCCCCCCcchhh-----cCCCCCCeeeccCCcCCCccch----h
Q 048618            2 SLTKLILRGNQLTGR----LPTEIGSFKELEYLDLSANRFNNSVPKSL-----GSLLKLHYLSLSNNQFVQELPK----E   68 (207)
Q Consensus         2 ~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~~----~   68 (207)
                      .++.+++++|.+...    ....+...+.++.+++++|.+.......+     .....|+.+++++|.+......    .
T Consensus       256 ~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~  335 (460)
T d1z7xw1         256 RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV  335 (460)
T ss_dssp             CCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccc
Confidence            577888888887643    22334567888888888888764322222     1345688888888887654333    3


Q ss_pred             hhCCCCCCEEecCCCCCCCchhH----Hhh-cCCCCCEEeCCCCcCCCC----ccccccCCCCCCEEECCCCcCcc
Q 048618           69 LEKLVQLSELDLSHNFLGGELLS----QIC-NMESLEKLNLSHNNLSGS----IPNCFEGMHGLSVIDISDNQLQG  135 (207)
Q Consensus        69 ~~~l~~L~~L~l~~n~l~~~~~~----~~~-~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~l~l~~n~~~~  135 (207)
                      +...++|++|++++|.+++....    .+. ..+.|+.|++++|.++..    +.+.+..+++|+.|++++|+++.
T Consensus       336 ~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         336 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             cccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCH
Confidence            34566788888888887653222    222 356688888888888743    34556677888888888888763

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.68  E-value=1.6e-07  Score=70.49  Aligned_cols=100  Identities=27%  Similarity=0.321  Sum_probs=78.2

Q ss_pred             CCCCEeeCcCCCCCCCcchhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchhHHhhcCCCCCEEeC
Q 048618           25 KELEYLDLSANRFNNSVPKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELLSQICNMESLEKLNL  104 (207)
Q Consensus        25 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  104 (207)
                      .+++.|+|+++.++ .+|+.   .++|++|++++|+++ .+|+.   ..+|+.|++++|.++.. +.   -.+.|++|++
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~l-~~---lp~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKAL-SD---LPPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCC-CS---CCTTCCEEEC
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccchh-hh---hccccccccc
Confidence            46899999999998 56643   568999999999997 44544   46899999999998743 32   1246999999


Q ss_pred             CCCcCCCCccccccCCCCCCEEECCCCcCcccCC
Q 048618          105 SHNNLSGSIPNCFEGMHGLSVIDISDNQLQGPVP  138 (207)
Q Consensus       105 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  138 (207)
                      ++|.++ .+|. +..+++|+.++++++.+.....
T Consensus       106 ~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~~~  137 (353)
T d1jl5a_         106 SNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKLPD  137 (353)
T ss_dssp             CSSCCS-SCCC-CTTCTTCCEEECCSSCCSCCCC
T ss_pred             cccccc-cccc-hhhhccceeecccccccccccc
Confidence            999998 4454 5778999999999998865443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=2.4e-08  Score=67.52  Aligned_cols=82  Identities=27%  Similarity=0.235  Sum_probs=63.8

Q ss_pred             CCCCCCCEeeCcCCCCCCCc--chhhcCCCCCCeeeccCCcCCCccchhhhCCCCCCEEecCCCCCCCchh-------HH
Q 048618           22 GSFKELEYLDLSANRFNNSV--PKSLGSLLKLHYLSLSNNQFVQELPKELEKLVQLSELDLSHNFLGGELL-------SQ   92 (207)
Q Consensus        22 ~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~~   92 (207)
                      ..+++|++|++++|+|+...  +..+..+++|+.|++++|.+....+-.+....+|+.+++++|.+.....       ..
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            46889999999999998653  3557789999999999999987655445556689999999999875432       23


Q ss_pred             hhcCCCCCEEe
Q 048618           93 ICNMESLEKLN  103 (207)
Q Consensus        93 ~~~l~~L~~L~  103 (207)
                      +..+++|+.||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            45678888775

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.52  E-value=2.1e-07  Score=62.98  Aligned_cols=112  Identities=19%  Similarity=0.210  Sum_probs=76.3

Q ss_pred             CCCCCCCEeeCcCC-CCCCC----cchhhcCCCCCCeeeccCCcCCCc----cchhhhCCCCCCEEecCCCCCCCchhH-
Q 048618           22 GSFKELEYLDLSAN-RFNNS----VPKSLGSLLKLHYLSLSNNQFVQE----LPKELEKLVQLSELDLSHNFLGGELLS-   91 (207)
Q Consensus        22 ~~l~~L~~L~L~~n-~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~-   91 (207)
                      .+.++|++|+|+++ .++..    +...+...+.|+.|++++|.+...    +.+.+...+.|++|++++|.+.+.... 
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            34578888888864 45432    233455667888899988887632    334455667899999999988764333 


Q ss_pred             ---HhhcCCCCCEEeCCCCcCCCC-------ccccccCCCCCCEEECCCCcC
Q 048618           92 ---QICNMESLEKLNLSHNNLSGS-------IPNCFEGMHGLSVIDISDNQL  133 (207)
Q Consensus        92 ---~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~~~~L~~l~l~~n~~  133 (207)
                         .+...++|++|++++|.+...       +.+++...++|+.++++.+..
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence               344557799999988865432       345666778888888877643

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.49  E-value=1.9e-07  Score=63.24  Aligned_cols=109  Identities=15%  Similarity=0.188  Sum_probs=80.8

Q ss_pred             CCccEEECCCC-CCccc----CCcccCCCCCCCEeeCcCCCCCC----CcchhhcCCCCCCeeeccCCcCCCc----cch
Q 048618            1 NSLTKLILRGN-QLTGR----LPTEIGSFKELEYLDLSANRFNN----SVPKSLGSLLKLHYLSLSNNQFVQE----LPK   67 (207)
Q Consensus         1 ~~L~~L~l~~n-~i~~~----~~~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n~l~~~----~~~   67 (207)
                      ++|+.|+|+++ .++..    +..++...++|++|+|++|.+..    .+...+...+.|+.|++++|.+...    +.+
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            47899999985 57643    34467788999999999999874    3334456678999999999998754    233


Q ss_pred             hhhCCCCCCEEecCCCCCCCc-------hhHHhhcCCCCCEEeCCCCcC
Q 048618           68 ELEKLVQLSELDLSHNFLGGE-------LLSQICNMESLEKLNLSHNNL  109 (207)
Q Consensus        68 ~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~l~~n~l  109 (207)
                      .+...++|++|++++|.....       +...+...+.|+.++++.+..
T Consensus        95 aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          95 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            456678899999999876532       334455678999999977643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.10  E-value=2.3e-06  Score=57.58  Aligned_cols=113  Identities=19%  Similarity=0.197  Sum_probs=77.8

Q ss_pred             cCCCCCCCEeeCcC-CCCCCC----cchhhcCCCCCCeeeccCCcCCCc----cchhhhCCCCCCEEecCCCCCCCchh-
Q 048618           21 IGSFKELEYLDLSA-NRFNNS----VPKSLGSLLKLHYLSLSNNQFVQE----LPKELEKLVQLSELDLSHNFLGGELL-   90 (207)
Q Consensus        21 ~~~l~~L~~L~L~~-n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~-   90 (207)
                      ..+.+.|++|++++ +.++..    +...+...++|+.|++++|.+...    +.+.+.....++.+++++|.+..... 
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            35668899999987 445532    233455778899999999987653    33445667889999999998875433 


Q ss_pred             ---HHhhcCCCCCEEeC--CCCcCCC----CccccccCCCCCCEEECCCCcC
Q 048618           91 ---SQICNMESLEKLNL--SHNNLSG----SIPNCFEGMHGLSVIDISDNQL  133 (207)
Q Consensus        91 ---~~~~~l~~L~~L~l--~~n~l~~----~~~~~~~~~~~L~~l~l~~n~~  133 (207)
                         ..+...++|+.++|  ++|.+..    .+.+.+...++|+.|+++.+..
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence               34456678887666  4566654    2445666788999999887654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.08  E-value=2e-06  Score=57.84  Aligned_cols=109  Identities=17%  Similarity=0.190  Sum_probs=79.1

Q ss_pred             CCccEEECCC-CCCccc----CCcccCCCCCCCEeeCcCCCCCCCc----chhhcCCCCCCeeeccCCcCCCc----cch
Q 048618            1 NSLTKLILRG-NQLTGR----LPTEIGSFKELEYLDLSANRFNNSV----PKSLGSLLKLHYLSLSNNQFVQE----LPK   67 (207)
Q Consensus         1 ~~L~~L~l~~-n~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~~~   67 (207)
                      ++|++|++++ +.++..    +..++...++|++|++++|.++...    ...+...++++.+++++|.+...    +.+
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            4789999998 467643    3455678899999999999987543    33455678999999999988643    334


Q ss_pred             hhhCCCCCCEEec--CCCCCCCc----hhHHhhcCCCCCEEeCCCCcC
Q 048618           68 ELEKLVQLSELDL--SHNFLGGE----LLSQICNMESLEKLNLSHNNL  109 (207)
Q Consensus        68 ~~~~l~~L~~L~l--~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l  109 (207)
                      .+...++|+.+++  ++|.+...    +...+...++|+.|++..+..
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            4566788987665  56677653    334455789999999987654