Citrus Sinensis ID: 048635

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560--
Protein Sequence
MKNSFIFDVDSTPPAKMSQWSDSTNCCDWTGVDCDEAGHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKHVLPNFNLHRRQLQAMKLIGSS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccEEEcccccEEEEEccccccccccccccccHHHHccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccccccccccEEEcccEEEEcccccccccccccccccEEEcccccccccccHHHHccccccHHHHccccccccEEEccccccEEcccccccccccccEEEcccccccccccccccccccccEEEEEccccEEEccccccccccccEEcccccccEEcccccccccccccEEEccccccEEEcccccccccccEEEcccccccEEEEcccccccccccccHHcccccccEEEccccEEEEcccccccccccccEEEcccccccccccHHccccccccEEEccccEEEEEccccccccccccccEEEcccccccccccHHHHcccccEEEcccccccccccHHHHcccccccEEccccccccccHHHHHccccccEEEccccccccccHHHHHccccccEEEcccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHcccccccccccccccccccccEEEEEcccccEEEEEcccccccccccHHHHHHHHcccccccHHHcccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHcccccHHHccccccEEEEEcccccccccccccHHHccccccEEEEEccccccccccHHHcccccccHHHHHcccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEEcccccccccccccccccccEEEEcccccccccccccccccccccHHHHHccccccEEEEccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEEccccccccccccHHHcccccccEEEcccccccccccHHHcccccEEEEEccccccccccHHHcccccccEEEcccccEEccccHHHcccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccHHHHHccccEEEEEccccccccccc
Coil and Loop (DISEMBL)
mknsfifdvdstppakmsqwsdstnccdwtgvdcdeaghvigldlsaepiligrlenasgLFSLQYMQSQFGlanltnltylnlshcgftgeipteisslprlvtldlssrepisgfswrlgipnfnfFQNLKELRELYLDnvdlsglgterckalsflpnlqvlnlssclllgpinhhlanlrshsQFFFVANLLNltnldlsqcdlrgkypekilQVSTLETldlsynpllqgslpnfpknsylqnlnlantsfsgilpdpigILKYLTrvdlrscsftgpiptsttnltqlfhvdfssnhfsgpipsfhesrnlnyldlssnnlngvlnlgrnnlngtlsdiifprncglhildlsgnqlqgvvpkslancnmlQVLDfrnnhisdnfpcwlrnASSLQVLVLRSnnfsghisyprnnvswplLQIVDfasnkfggrlsqkcstTLGMRYQATNKRCRDQATEEMGRFKSLYALNMshnaltgsipssfgnlkQIESLDLsmnnlsgkipAQLASLNFLSVLNLSYNnlvgqiptakhvlpnfnlHRRQLQAMKLIGSS
Flexible Loop (DISEMBL)
mknsfifdvdstppakmsqwsDSTNCCDWTGVDCDEAGHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKcsttlgmryqatnkRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKHVLPNFNLHRRQLQAMKLIGSS
Low Complexity Region (SEG)
MKNSFIFDVDSTPPAKMSQWSDSTNCCDWTGVDCDEAGHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGlanltnltylnlSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPnlqvlnlssclllGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHEsrnlnyldlssnnlngvlnlgrnnlngtlsDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQlaslnflsvlnlsynnlVGQIPTAKHVLPNFNLHRRQLQAMKLIGSS
Disordered region (IsUnstruct)
*******************WSDSTNCCDWTGVDCDEAGHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNK*C********GRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKHVLPNFNLHRRQL*********
Disordered Region (DISOPRED)
MKNSFIFDV**TPPAKMSQWSDSTNCCDWTGVDCDEAGHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKHVLPNFNLHRRQLQAMKLI***
Disordered Region (DISEMBL)
MKNSFIFDVDST**********STNCCDWTGVDCDEAGHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKHVLPNFNLHRRQLQAMKLIGSS
Disordered Region (DISPRO)
****FIFDVD*TPPAKMSQWSDSTNCCDWTGVDCDEAGHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKHVLPNFNLHRRQLQA*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKNSFIFDVDSTPPAKMSQWSDSTNCCDWTGVDCDEAGHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKHVLPNFNLHRRQLQAMKLIGSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	562	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.918	0.609	0.303	4e-54
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.861	0.387	0.307	2e-42
Q9FRS6	1029	Leucine-rich repeat recep	no	no	0.866	0.473	0.297	8e-41
Q9LP24	1120	Probable leucine-rich rep	no	no	0.907	0.455	0.283	9e-40
Q9FL28	1173	LRR receptor-like serine/	no	no	0.790	0.378	0.318	2e-39
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.807	0.362	0.290	2e-39
O82318	960	Probably inactive leucine	no	no	0.850	0.497	0.302	6e-39
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.841	0.396	0.307	9e-39
Q9M2Z1	1002	Leucine-rich repeat recep	no	no	0.875	0.491	0.285	4e-38
Q9LHP4	1141	Receptor-like protein kin	no	no	0.891	0.439	0.277	4e-38

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  213 bits (541), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 208/685 (30%), Positives = 291/685 (42%), Gaps = 169/685 (24%)

Query: 20  WSDSTNCCDWTGVDC-DEAGHVIGLDLSAEPILIGRLENASGLFSLQYMQ-------SQF 71
           W+ ST+CC W GV C D++G VI LD+     L   L+  S LF LQY++       + +
Sbjct: 65  WNKSTDCCLWNGVTCNDKSGQVISLDI-PNTFLNNYLKTNSSLFKLQYLRHLDLTNCNLY 123

Query: 72  G-----LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLG---- 122
           G     L NL++LT +NL    F GEIP  I +L +L  L L++          LG    
Sbjct: 124 GEIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGEIPSSLGNLSR 183

Query: 123 IPNFNFFQN------------LKELRELYLDNVDLSG---------------------LG 149
           + N   F N            LK+LR L L + +L G                     L 
Sbjct: 184 LVNLELFSNRLVGKIPDSIGDLKQLRNLSLASNNLIGEIPSSLGNLSNLVHLVLTHNQLV 243

Query: 150 TERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVAN------------LLN 197
            E   ++  L  L+V++  +  L G I    ANL   S F   +N              N
Sbjct: 244 GEVPASIGNLIELRVMSFENNSLSGNIPISFANLTKLSIFVLSSNNFTSTFPFDMSIFHN 303

Query: 198 LTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQG-SLPNFPKNSYLQNLNLANTSF 256
           L   D+S     G +P+ +L + +LE++ L  N         N   ++ LQ+L L     
Sbjct: 304 LEYFDVSYNSFSGPFPKSLLLIPSLESIYLQENQFTGPIEFANTSSSTKLQDLILGRNRL 363

Query: 257 SGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIP------- 309
            G +P+ I  L  L  +D+   +FTG IP + + L  L H+D S N+  G +P       
Sbjct: 364 HGPIPESISRLLNLEELDISHNNFTGAIPPTISKLVNLLHLDLSKNNLEGEVPACLWRLN 423

Query: 310 -------SFHESRN-------------------------------LNYLDLSSNNLNGV- 330
                  SF    N                               L +LDLS+N  +G  
Sbjct: 424 TMVLSHNSFSSFENTSQEEALIEELDLNSNSFQGPIPYMICKLSSLGFLDLSNNLFSGSI 483

Query: 331 -------------LNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNML 377
                        LNLG NN +GTL DI F +   L  LD+S NQL+G  PKSL NC  L
Sbjct: 484 PSCIRNFSGSIKELNLGDNNFSGTLPDI-FSKATELVSLDVSHNQLEGKFPKSLINCKAL 542

Query: 378 QVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKF 437
           ++++  +N I D FP WL +  SL VL LRSN F G + +   ++ +  L+I+D + N F
Sbjct: 543 ELVNVESNKIKDIFPSWLESLPSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNF 602

Query: 438 GGRL------SQKCSTTLGM---RYQATNKRCRDQATEEM-------------------- 468
            G L      + K  TTL     +Y     R  D    EM                    
Sbjct: 603 SGTLPPYYFSNWKDMTTLTEEMDQYMTEFWRYADSYYHEMEMVNKGVDMSFERIRRDFRA 662

Query: 469 ----------------GRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKI 512
                           G  K L  LN+S NA T  IP    NL ++E+LD+S N LSG+I
Sbjct: 663 IDFSGNKINGNIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQI 722

Query: 513 PAQLASLNFLSVLNLSYNNLVGQIP 537
           P  LA+L+FLS +N S+N L G +P
Sbjct: 723 PQDLAALSFLSYMNFSHNLLQGPVP 747

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  174 bits (440), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 175/570 (30%), Positives = 256/570 (44%), Gaps = 86/570 (15%)

Query: 1   MKNSFIFDVDSTPPAKMSQW-SDSTNCCDWTGVDCDEAG--HVIGLDLSAEPILIGRLEN 57
           +K S + +     P  + QW SD+ N C WTGV CD  G   VI L+L+           
Sbjct: 33  VKKSLVTNPQEDDP--LRQWNSDNINYCSWTGVTCDNTGLFRVIALNLT----------- 79

Query: 58  ASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGF 117
             GL     +   FG     NL +L+LS     G IPT +S+L  L +L L S +     
Sbjct: 80  --GLGLTGSISPWFG--RFDNLIHLDLSSNNLVGPIPTALSNLTSLESLFLFSNQLTGEI 135

Query: 118 SWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPIN 177
             +LG        +L  +R L + + +L G   +  + L  L NLQ+L L+SC L GPI 
Sbjct: 136 PSQLG--------SLVNIRSLRIGDNELVG---DIPETLGNLVNLQMLALASCRLTGPIP 184

Query: 178 HHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSL 237
             L              L+ + +L L    L G  P ++   S L     + N +L G++
Sbjct: 185 SQLGR------------LVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAEN-MLNGTI 231

Query: 238 P-NFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFH 296
           P    +   L+ LNLAN S +G +P  +G +  L  + L +    G IP S  +L  L  
Sbjct: 232 PAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQT 291

Query: 297 VDFSSNHFSGPIPSFHESRNLN-YLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHI 355
           +D S+N+ +G IP   E  N++  LDL          L  N+L+G+L   I   N  L  
Sbjct: 292 LDLSANNLTGEIP--EEFWNMSQLLDLV---------LANNHLSGSLPKSICSNNTNLEQ 340

Query: 356 LDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWL-------------------- 395
           L LSG QL G +P  L+ C  L+ LD  NN ++ + P  L                    
Sbjct: 341 LVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTL 400

Query: 396 ----RNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCS--TTL 449
                N ++LQ LVL  NN  G +  P+   +   L+++    N+F G + Q+    T+L
Sbjct: 401 SPSISNLTNLQWLVLYHNNLEGKL--PKEISALRKLEVLFLYENRFSGEIPQEIGNCTSL 458

Query: 450 GMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS 509
            M     N     +    +GR K L  L++  N L G +P+S GN  Q+  LDL+ N LS
Sbjct: 459 KMIDMFGN-HFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLS 517

Query: 510 GKIPAQLASLNFLSVLNLSYNNLVGQIPTA 539
           G IP+    L  L  L L  N+L G +P +
Sbjct: 518 GSIPSSFGFLKGLEQLMLYNNSLQGNLPDS 547

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FRS6|PXL1_ARATH Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana GN=PXL1 PE=2 SV=1

 Score =  168 bits (426), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 162/545 (29%), Positives = 242/545 (44%), Gaps = 58/545 (10%)

Query: 10  DSTPPAKMSQWSDSTNCCDWTGVDCDEAGHVIGLDLSAEPILIGRLENASGLFSLQYMQS 69
           D   P   + +S+  +C  WTGV CD  G+V  L LS          N SG  S Q    
Sbjct: 50  DWKRPENATTFSELVHC-HWTGVHCDANGYVAKLLLSNM--------NLSGNVSDQ---- 96

Query: 70  QFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFF 129
              + +  +L  L+LS+  F   +P  +S+L  L  +D+S       F + LG+      
Sbjct: 97  ---IQSFPSLQALDLSNNAFESSLPKSLSNLTSLKVIDVSVNSFFGTFPYGLGMAT---- 149

Query: 130 QNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQF 189
                L  +   + + SG   E    L     L+VL+       G +     NL+     
Sbjct: 150 ----GLTHVNASSNNFSGFLPED---LGNATTLEVLDFRGGYFEGSVPSSFKNLK----- 197

Query: 190 FFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLP-NFPKNSYLQN 248
                  NL  L LS  +  GK P+ I ++S+LET+ L YN  + G +P  F K + LQ 
Sbjct: 198 -------NLKFLGLSGNNFGGKVPKVIGELSSLETIILGYNGFM-GEIPEEFGKLTRLQY 249

Query: 249 LNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPI 308
           L+LA  + +G +P  +G LK LT V L     TG +P     +T L  +D S N  +G I
Sbjct: 250 LDLAVGNLTGQIPSSLGQLKQLTTVYLYQNRLTGKLPRELGGMTSLVFLDLSDNQITGEI 309

Query: 309 P-SFHESRNLNYLDLSSNNLNG-------------VLNLGRNNLNGTLSDIIFPRNCGLH 354
           P    E +NL  L+L  N L G             VL L +N+L G+L  +   +N  L 
Sbjct: 310 PMEVGELKNLQLLNLMRNQLTGIIPSKIAELPNLEVLELWQNSLMGSLP-VHLGKNSPLK 368

Query: 355 ILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGH 414
            LD+S N+L G +P  L     L  L   NN  S   P  + +  +L  + ++ N+ SG 
Sbjct: 369 WLDVSSNKLSGDIPSGLCYSRNLTKLILFNNSFSGQIPEEIFSCPTLVRVRIQKNHISGS 428

Query: 415 ISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSL 474
           I  P  +   P+LQ ++ A N   G++    + +  + +   +       +  +    +L
Sbjct: 429 I--PAGSGDLPMLQHLELAKNNLTGKIPDDIALSTSLSFIDISFNHLSSLSSSIFSSPNL 486

Query: 475 YALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVG 534
                SHN   G IP+   +   +  LDLS N+ SG IP ++AS   L  LNL  N LVG
Sbjct: 487 QTFIASHNNFAGKIPNQIQDRPSLSVLDLSFNHFSGGIPERIASFEKLVSLNLKSNQLVG 546

Query: 535 QIPTA 539
           +IP A
Sbjct: 547 EIPKA 551

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  165 bits (418), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 174/613 (28%), Positives = 256/613 (41%), Gaps = 103/613 (16%)

Query: 12  TPPAKMSQWSDSTN------CCDWTGVDCDEAGHVIGLDLSAEPILIGRLENASGLFSLQ 65
           T  +K+S W    N      C  W GV C+  G +  L+L+   I         G F   
Sbjct: 45  TNSSKLSSWVHDANTNTSFSCTSWYGVSCNSRGSIEELNLTNTGI--------EGTFQ-- 94

Query: 66  YMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPN 125
                F   +L+NL Y++LS    +G IP +  +L +L+  DLS+       S  LG   
Sbjct: 95  ----DFPFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEISPSLG--- 147

Query: 126 FNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRS 185
                NLK L  LYL    L+ +       L  + ++  L LS   L G I   L NL++
Sbjct: 148 -----NLKNLTVLYLHQNYLTSVIPSE---LGNMESMTDLALSQNKLTGSIPSSLGNLKN 199

Query: 186 HSQFFFVANLL------------NLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLL 233
               +   N L            ++T+L LSQ  L G  P  +  +  L  L L  N L 
Sbjct: 200 LMVLYLYENYLTGVIPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLT 259

Query: 234 QGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQ 293
               P       + NL L+    +G +P  +G LK LT + L     TG IP    N+  
Sbjct: 260 GVIPPEIGNMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIES 319

Query: 294 LFHVDFSSNHFSGPIP-SFHESRNLNYLDLSSNNLNGV-------------LNLGRNNLN 339
           +  ++ S+N  +G IP S    +NL  L L  N L GV             L L  N L 
Sbjct: 320 MIDLELSNNKLTGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNMESMIDLQLNNNKLT 379

Query: 340 GTLSDI-------------------IFPRNCG----LHILDLSGNQLQGVVPKSLANCNM 376
           G++                      + P+  G    +  LDLS N+L G VP S  N   
Sbjct: 380 GSIPSSFGNLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFTK 439

Query: 377 LQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSG-------------HISYPRNNVS 423
           L+ L  R NH+S   P  + N+S L  L+L +NNF+G             +IS   N++ 
Sbjct: 440 LESLYLRVNHLSGAIPPGVANSSHLTTLILDTNNFTGFFPETVCKGRKLQNISLDYNHLE 499

Query: 424 WPL---------LQIVDFASNKFGGRLSQKCSTTLGMRY-QATNKRCRDQATEEMGRFKS 473
            P+         L    F  NKF G + +       + +   ++ +   + +    +   
Sbjct: 500 GPIPKSLRDCKSLIRARFLGNKFTGDIFEAFGIYPDLNFIDFSHNKFHGEISSNWEKSPK 559

Query: 474 LYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV 533
           L AL MS+N +TG+IP+   N+ Q+  LDLS NNL G++P  + +L  LS L L+ N L 
Sbjct: 560 LGALIMSNNNITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLS 619

Query: 534 GQIPTAKHVLPNF 546
           G++P     L N 
Sbjct: 620 GRVPAGLSFLTNL 632

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  164 bits (414), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 158/496 (31%), Positives = 231/496 (46%), Gaps = 52/496 (10%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNF--NFFQ 130
           L  LT LT+L LS     G I  EI  L  L  L L S              NF   F Q
Sbjct: 308 LFRLTQLTHLGLSENHLVGPISEEIGFLESLEVLTLHSN-------------NFTGEFPQ 354

Query: 131 NLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLR------ 184
           ++  LR L +  V  + +  E    L  L NL+ L+    LL GPI   ++N        
Sbjct: 355 SITNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLD 414

Query: 185 -SHSQFFFVA----NLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN 239
            SH+Q           +NLT + + +    G+ P+ I   S LETL ++ N L     P 
Sbjct: 415 LSHNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPL 474

Query: 240 FPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDF 299
             K   L+ L ++  S +G +P  IG LK L  + L S  FTG IP   +NLT L  +  
Sbjct: 475 IGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRM 534

Query: 300 SSNHFSGPIPS-FHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDL 358
            SN   GPIP    + + L+ LDLS+N  +G +              +F +   L  L L
Sbjct: 535 YSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQI------------PALFSKLESLTYLSL 582

Query: 359 SGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPC-WLRNASSLQVLVLRSNNF-SGHIS 416
            GN+  G +P SL + ++L   D  +N ++   P   L +  ++Q+ +  SNN  +G I 
Sbjct: 583 QGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTI- 641

Query: 417 YPRNNVSWPLLQIVDFASNKFGG---RLSQKCSTTLGMRYQATN--KRCRDQATEEMGRF 471
            P+      ++Q +D ++N F G   R  Q C     + +   N      D+  + M   
Sbjct: 642 -PKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGM--- 697

Query: 472 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNN 531
             + +LN+S N+ +G IP SFGN+  + SLDLS NNL+G+IP  LA+L+ L  L L+ NN
Sbjct: 698 DMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNN 757

Query: 532 LVGQIPTAKHVLPNFN 547
           L G +P +  V  N N
Sbjct: 758 LKGHVPESG-VFKNIN 772

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  164 bits (414), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 163/562 (29%), Positives = 233/562 (41%), Gaps = 108/562 (19%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSRE---PISGFSWRLGIPNF--- 126
           L +L ++ YLNL      G IP  ++ L  L TLDLSS      I    WR+    F   
Sbjct: 260 LGDLVSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVL 319

Query: 127 -----------NFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGP 175
                          N   L++L+L    LSG   E    +S   +L++L+LS+  L G 
Sbjct: 320 AKNRLSGSLPKTICSNNTSLKQLFLSETQLSG---EIPAEISNCQSLKLLDLSNNTLTGQ 376

Query: 176 INHHLANLRSHSQFFF------------VANLLNLTNLDLSQCDLRGKYPEKILQVSTLE 223
           I   L  L   +  +             ++NL NL    L   +L GK P++I  +  LE
Sbjct: 377 IPDSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLE 436

Query: 224 TLDLSYNPLLQGSLPNFPKN-SYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTG 282
            + L Y     G +P    N + LQ ++      SG +P  IG LK LTR+ LR     G
Sbjct: 437 IMYL-YENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVG 495

Query: 283 PIPTSTTNLTQLFHVDFSSNHFSGPIPS-------------FHES------------RNL 317
            IP S  N  Q+  +D + N  SG IPS             ++ S            +NL
Sbjct: 496 NIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSLINLKNL 555

Query: 318 NYLDLSSNNLNGV------------------------------------LNLGRNNLNGT 341
             ++ SSN  NG                                     L LG+N   G 
Sbjct: 556 TRINFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGR 615

Query: 342 LSDIIFPRNCG----LHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRN 397
           +     PR  G    L +LD+S N L G++P  L  C  L  +D  NN++S   P WL  
Sbjct: 616 I-----PRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGK 670

Query: 398 ASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGM-RYQAT 456
              L  L L SN F G  S P    S   +  +    N   G + Q+      +      
Sbjct: 671 LPLLGELKLSSNKFVG--SLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLE 728

Query: 457 NKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIES-LDLSMNNLSGKIPAQ 515
             +        +G+   L+ L +S NALTG IP   G L+ ++S LDLS NN +G+IP+ 
Sbjct: 729 ENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPST 788

Query: 516 LASLNFLSVLNLSYNNLVGQIP 537
           +++L  L  L+LS+N LVG++P
Sbjct: 789 ISTLPKLESLDLSHNQLVGEVP 810

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score =  162 bits (410), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 177/585 (30%), Positives = 262/585 (44%), Gaps = 107/585 (18%)

Query: 13  PPAKMSQWSDST--NCCDWTGVDCDEAGHVIGLDLSAEPILIGRLENASGLFSLQYMQSQ 70
           P   +S WS S+  + C W+GV C+    V+ LDLS +  + G++  A+  F L ++Q+ 
Sbjct: 45  PLKHLSSWSYSSTNDVCLWSGVVCNNISRVVSLDLSGKN-MSGQILTAAT-FRLPFLQT- 101

Query: 71  FGLANLTN------------------LTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSRE 112
               NL+N                  L YLNLS+  F+G IP     LP L TLDLS+  
Sbjct: 102 ---INLSNNNLSGPIPHDIFTTSSPSLRYLNLSNNNFSGSIPRGF--LPNLYTLDLSN-- 154

Query: 113 PISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLL 172
                         N F       E+Y D              +    NL+VL+L   +L
Sbjct: 155 --------------NMFTG-----EIYND--------------IGVFSNLRVLDLGGNVL 181

Query: 173 LGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPL 232
            G +  +L NL S  +F           L L+   L G  P ++ ++  L+ + L YN L
Sbjct: 182 TGHVPGYLGNL-SRLEF-----------LTLASNQLTGGVPVELGKMKNLKWIYLGYNNL 229

Query: 233 LQGSLP-NFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNL 291
             G +P      S L +L+L   + SG +P  +G LK L  + L     +G IP S  +L
Sbjct: 230 -SGEIPYQIGGLSSLNHLDLVYNNLSGPIPPSLGDLKKLEYMFLYQNKLSGQIPPSIFSL 288

Query: 292 TQLFHVDFSSNHFSGPIPSF-HESRNLNYLDLSSNNLNG-------------VLNLGRNN 337
             L  +DFS N  SG IP    + ++L  L L SNNL G             VL L  N 
Sbjct: 289 QNLISLDFSDNSLSGEIPELVAQMQSLEILHLFSNNLTGKIPEGVTSLPRLKVLQLWSNR 348

Query: 338 LNGTLSDIIFPRNCGLH----ILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPC 393
            +G +     P N G H    +LDLS N L G +P +L +   L  L   +N +    P 
Sbjct: 349 FSGGI-----PANLGKHNNLTVLDLSTNNLTGKLPDTLCDSGHLTKLILFSNSLDSQIPP 403

Query: 394 WLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRY 453
            L    SL+ + L++N FSG +  PR      L+  +D ++N   G ++      L M  
Sbjct: 404 SLGMCQSLERVRLQNNGFSGKL--PRGFTKLQLVNFLDLSNNNLQGNINTWDMPQLEMLD 461

Query: 454 QATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP 513
            + NK   +    +  R K L  L++S N ++G +P       +I  LDLS N ++G IP
Sbjct: 462 LSVNKFFGE--LPDFSRSKRLKKLDLSRNKISGVVPQGLMTFPEIMDLDLSENEITGVIP 519

Query: 514 AQLASLNFLSVLNLSYNNLVGQIPTA---KHVLPNFNLHRRQLQA 555
            +L+S   L  L+LS+NN  G+IP++     VL + +L   QL  
Sbjct: 520 RELSSCKNLVNLDLSHNNFTGEIPSSFAEFQVLSDLDLSCNQLSG 564

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  162 bits (409), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 168/547 (30%), Positives = 251/547 (45%), Gaps = 74/547 (13%)

Query: 27  CDWTGVDCDEAGHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSH 86
           CDW GV C                L+GR+ + S        Q    +++L NL  L L+ 
Sbjct: 55  CDWVGVTC----------------LLGRVNSLSLPSLSLRGQIPKEISSLKNLRELCLAG 98

Query: 87  CGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRE-LYLDNVDL 145
             F+G+IP EI +L  L TLDLS    ++G   RL          L EL + LYLD  D 
Sbjct: 99  NQFSGKIPPEIWNLKHLQTLDLSGNS-LTGLLPRL----------LSELPQLLYLDLSDN 147

Query: 146 SGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFF------------VA 193
              G+        LP L  L++S+  L G I   +  L + S  +             + 
Sbjct: 148 HFSGSLPPSFFISLPALSSLDVSNNSLSGEIPPEIGKLSNLSNLYMGLNSFSGQIPSEIG 207

Query: 194 NLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLP-NFPKNSYLQNLNLA 252
           N+  L N     C   G  P++I ++  L  LDLSYNP L+ S+P +F +   L  LNL 
Sbjct: 208 NISLLKNFAAPSCFFNGPLPKEISKLKHLAKLDLSYNP-LKCSIPKSFGELHNLSILNLV 266

Query: 253 NTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFH 312
           +    G++P  +G  K L  + L   S +GP+P   + +  L       N  SG +PS+ 
Sbjct: 267 SAELIGLIPPELGNCKSLKSLMLSFNSLSGPLPLELSEIP-LLTFSAERNQLSGSLPSWM 325

Query: 313 -ESRNLNYLDLSSNNLNGV-------------LNLGRNNLNGTLSDIIFPRN-CG---LH 354
            + + L+ L L++N  +G              L+L  N L+G++     PR  CG   L 
Sbjct: 326 GKWKVLDSLLLANNRFSGEIPHEIEDCPMLKHLSLASNLLSGSI-----PRELCGSGSLE 380

Query: 355 ILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGH 414
            +DLSGN L G + +    C+ L  L   NN I+ + P  L     L  L L SNNF+G 
Sbjct: 381 AIDLSGNLLSGTIEEVFDGCSSLGELLLTNNQINGSIPEDLWKL-PLMALDLDSNNFTGE 439

Query: 415 ISYPRNNVSWPLLQIVDFAS--NKFGGRLSQKCSTTLGM-RYQATNKRCRDQATEEMGRF 471
           I  P++   W    +++F +  N+  G L  +      + R   ++ +   +   E+G+ 
Sbjct: 440 I--PKS--LWKSTNLMEFTASYNRLEGYLPAEIGNAASLKRLVLSDNQLTGEIPREIGKL 495

Query: 472 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNN 531
            SL  LN++ N   G IP   G+   + +LDL  NNL G+IP ++ +L  L  L LSYNN
Sbjct: 496 TSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNN 555

Query: 532 LVGQIPT 538
           L G IP+
Sbjct: 556 LSGSIPS 562

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1

 Score =  159 bits (403), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 174/609 (28%), Positives = 258/609 (42%), Gaps = 117/609 (19%)

Query: 1   MKNSFIFDVDSTPPAKMSQWSDSTNCCDWTGVDCDEA-GHVIGLDLSA---EPILIGRLE 56
           +K+SF  D  S     ++ W+ ST  C WTGV CD +  HV  LDLS       L   + 
Sbjct: 34  LKSSFTIDEHS---PLLTSWNLSTTFCSWTGVTCDVSLRHVTSLDLSGLNLSGTLSSDVA 90

Query: 57  NASGLFSLQYMQSQFG------LANLTNLTYLNLSHCGFTGEIPTEISS-LPRLVTLDL- 108
           +   L +L    +Q        ++NL  L +LNLS+  F G  P E+SS L  L  LDL 
Sbjct: 91  HLPLLQNLSLAANQISGPIPPQISNLYELRHLNLSNNVFNGSFPDELSSGLVNLRVLDLY 150

Query: 109 ----SSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQV 164
               +   P+S               NL +LR L+L     SG   +        P L+ 
Sbjct: 151 NNNLTGDLPVS-------------LTNLTQLRHLHLGGNYFSG---KIPATYGTWPVLEY 194

Query: 165 LNLSSCLLLGPINHHLANLRSHSQFFF-------------VANLLNLTNLDLSQCDLRGK 211
           L +S   L G I   + NL +  + +              + NL  L   D + C L G+
Sbjct: 195 LAVSGNELTGKIPPEIGNLTTLRELYIGYYNAFENGLPPEIGNLSELVRFDAANCGLTGE 254

Query: 212 YPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLT 271
            P +I ++  L+TL L  N             S L++++L+N  F+G +P     LK LT
Sbjct: 255 IPPEIGKLQKLDTLFLQVNAFTGTITQELGLISSLKSMDLSNNMFTGEIPTSFSQLKNLT 314

Query: 272 RVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIP-SFHESRNLNYLDLSSNNLNGV 330
            ++L      G IP     + +L  +    N+F+G IP    E+  L  LDLSSN L G 
Sbjct: 315 LLNLFRNKLYGAIPEFIGEMPELEVLQLWENNFTGSIPQKLGENGRLVILDLSSNKLTGT 374

Query: 331 L-------------------------------------NLGRNNLNGTLSDIIF--PRNC 351
           L                                      +G N LNG++   +F  P+  
Sbjct: 375 LPPNMCSGNRLMTLITLGNFLFGSIPDSLGKCESLTRIRMGENFLNGSIPKELFGLPK-- 432

Query: 352 GLHILDLSGNQLQGVVPKSLANCNM-LQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNN 410
            L  ++L  N L G +P S    +  L  +   NN +S + P  + N S +Q L+L  N 
Sbjct: 433 -LSQVELQDNYLTGELPISGGGVSGDLGQISLSNNQLSGSLPAAIGNLSGVQKLLLDGNK 491

Query: 411 FSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGR 470
           FSG I  P        L  +DF+ N F GR++                        E+ R
Sbjct: 492 FSGSI--PPEIGRLQQLSKLDFSHNLFSGRIA-----------------------PEISR 526

Query: 471 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYN 530
            K L  +++S N L+G IP+    +K +  L+LS N+L G IP  +AS+  L+ ++ SYN
Sbjct: 527 CKLLTFVDLSRNELSGDIPNELTGMKILNYLNLSRNHLVGSIPVTIASMQSLTSVDFSYN 586

Query: 531 NLVGQIPTA 539
           NL G +P+ 
Sbjct: 587 NLSGLVPST 595

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  159 bits (403), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 167/601 (27%), Positives = 264/601 (43%), Gaps = 100/601 (16%)

Query: 22  DSTNCCDWTGVDCDEAGHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTN--- 78
           D+T C +WT + C   G +  +D+ + P+ +   +N     SLQ +      ANLT    
Sbjct: 65  DNTPCNNWTFITCSSQGFITDIDIESVPLQLSLPKNLPAFRSLQKLT--ISGANLTGTLP 122

Query: 79  --------LTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQ 130
                   L  L+LS  G  G+IP  +S L  L TL L+S +           P+ +   
Sbjct: 123 ESLGDCLGLKVLDLSSNGLVGDIPWSLSKLRNLETLILNSNQLTGKIP-----PDISKCS 177

Query: 131 NLKELRELYLDNV----------DLSGLGTERC--------------------------- 153
            LK L  +  DN+           LSGL   R                            
Sbjct: 178 KLKSL--ILFDNLLTGSIPTELGKLSGLEVIRIGGNKEISGQIPSEIGDCSNLTVLGLAE 235

Query: 154 --------KALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVAN----------- 194
                    +L  L  L+ L++ + ++ G I   L N       F   N           
Sbjct: 236 TSVSGNLPSSLGKLKKLETLSIYTTMISGEIPSDLGNCSELVDLFLYENSLSGSIPREIG 295

Query: 195 -LLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN-FPKNSYLQNLNLA 252
            L  L  L L Q  L G  PE+I   S L+ +DLS N LL GS+P+   + S+L+   ++
Sbjct: 296 QLTKLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLSLN-LLSGSIPSSIGRLSFLEEFMIS 354

Query: 253 NTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIP-SF 311
           +  FSG +P  I     L ++ L     +G IP+    LT+L      SN   G IP   
Sbjct: 355 DNKFSGSIPTTISNCSSLVQLQLDKNQISGLIPSELGTLTKLTLFFAWSNQLEGSIPPGL 414

Query: 312 HESRNLNYLDLSSNNLNGVLNLG-------------RNNLNGTLSDIIFPRNCG-LHILD 357
            +  +L  LDLS N+L G +  G              N+L+G +   I   NC  L  L 
Sbjct: 415 ADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLISNSLSGFIPQEI--GNCSSLVRLR 472

Query: 358 LSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISY 417
           L  N++ G +P  + +   +  LDF +N +    P  + + S LQ++ L +N+  G +  
Sbjct: 473 LGFNRITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGSLPN 532

Query: 418 PRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRC-RDQATEEMGRFKSLYA 476
           P +++S   LQ++D ++N+F G++       + +     +K          +G    L  
Sbjct: 533 PVSSLSG--LQVLDVSANQFSGKIPASLGRLVSLNKLILSKNLFSGSIPTSLGMCSGLQL 590

Query: 477 LNMSHNALTGSIPSSFGNLKQIE-SLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQ 535
           L++  N L+G IPS  G+++ +E +L+LS N L+GKIP+++ASLN LS+L+LS+N L G 
Sbjct: 591 LDLGSNELSGEIPSELGDIENLEIALNLSSNRLTGKIPSKIASLNKLSILDLSHNMLEGD 650

Query: 536 I 536
           +
Sbjct: 651 L 651

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	562
356523336	876	PREDICTED: receptor-like protein 12-like	0.957	0.614	0.368	7e-99
297735657	774	unnamed protein product [Vitis vinifera]	0.925	0.671	0.381	4e-87
359481298	1070	PREDICTED: LRR receptor-like serine/thre	0.911	0.478	0.396	1e-85
37956237	1051	resistance protein SlVe1 precursor [Sola	0.932	0.498	0.399	2e-85
359481300	1054	PREDICTED: leucine-rich repeat receptor	0.923	0.492	0.423	3e-85
49073108	1051	verticillium wilt disease resistance pro	0.927	0.495	0.4	4e-84
34761800	1138	verticillium wilt disease resistance pro	0.928	0.458	0.392	4e-84
224139184	1032	predicted protein [Populus trichocarpa]	0.923	0.502	0.395	1e-83
237899609	1139	verticillium wilt disease resistance pro	0.939	0.463	0.372	1e-83
237899605	1139	verticillium wilt disease resistance pro	0.939	0.463	0.372	2e-83

>gi|356523336|ref|XP_003530296.1| PREDICTED: receptor-like protein 12-like [Glycine max]

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 269/729 (36%), Positives = 349/729 (47%), Gaps = 191/729 (26%)

Query: 1   MKNSFIFDVDSTPPAKMSQWSDSTNCCDWTGVDCDEAGHVIGLDLSAEPILIGRLENASG 60
           +KN   F+ + +   K+  W+ S +CC+W GV CDE GHVIGLDLS E I  G L+N+S 
Sbjct: 43  LKNGLKFNPEKS--RKLVTWNQSIDCCEWRGVTCDEEGHVIGLDLSGESI-NGGLDNSST 99

Query: 61  LFSLQYMQSQFGLA-------------NLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLD 107
           LF LQ +Q Q  LA              L  LTYLNLSH GF G+IP EIS L  LVTLD
Sbjct: 100 LFKLQNLQ-QLNLAANNLGSEIPSGFNKLKRLTYLNLSHAGFVGQIPIEISYLTWLVTLD 158

Query: 108 LSSREPISGFSWRLGIPNFNFF-QNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLN 166
           +SS   + G   +L   +     QNL  +R+LY++ V +S  G E C AL  L NLQ L 
Sbjct: 159 ISSVSYLYGQPLKLENIDLQMLVQNLTMIRQLYMNGVSVSAQGNEWCNALLQLHNLQELG 218

Query: 167 LSSCLLLGPINHHLANLRSHSQFFF------------VANLLNLTNLDLSQCDLRGKYPE 214
           +S+C L GP++  L  L + S                 A   NLT L LS C L G +PE
Sbjct: 219 MSNCNLSGPLDPSLTRLENLSVIRLDQNNLSSSVPETFAEFPNLTILHLSSCGLTGVFPE 278

Query: 215 KILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVD 274
           KI QV+TL  +DLS+N  L GSLP FP N  L+ L + +TSFSG +PD +  L+ L+ ++
Sbjct: 279 KIFQVATLSDIDLSFNYHLYGSLPEFPLNGPLRTLVVRDTSFSGAIPDSVNNLRQLSILN 338

Query: 275 LRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGV---- 330
           L +C F G +P+S + L +L ++D S N+F+GPIPS + S NL +LDLS N+L G     
Sbjct: 339 LSTCLFNGTLPSSMSRLMELTYLDLSFNNFTGPIPSLNMSNNLMHLDLSHNDLTGAITSV 398

Query: 331 ----------LNLGRNNLNGT---------------------------------LSDIIF 347
                     ++L  N LNG+                                 LS IIF
Sbjct: 399 HFEGLRKLVQIDLQYNLLNGSIPSSLFALPLVKTIQLSNNHFQGQLDEFSNTSYLSSIIF 458

Query: 348 P----------------RNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNH----I 387
                             N  L +LD+S NQ  G +P+ LA  + L VL+ ++N     I
Sbjct: 459 LSLSNNSLSGSIPHSLCNNSNLLVLDVSYNQFNGKIPECLAQSDTLVVLNLQHNQFNGSI 518

Query: 388 SDNFP--------------------------------------------CWLRNASSLQV 403
            D FP                                            C+L+  S+L+V
Sbjct: 519 PDKFPLSCALKTLDLNSNLLRGPIPKSLANCTSLEVLDLGNNQVDDGFPCFLKTISTLRV 578

Query: 404 LVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTL-------------- 449
           +VLR N F GHI     N +W +LQIVD A N F G L  KC  T               
Sbjct: 579 MVLRGNKFHGHIGCSHTNSTWHMLQIVDVAFNNFSGLLPAKCFKTWKAMMRDEYHDGSKL 638

Query: 450 -----------GMRYQATNKRCRD-------------------------QATEEMGRFKS 473
                      G+ YQ +    R                             EE+  F  
Sbjct: 639 IRIGSQVLTFGGIYYQDSVTLTRKGLQMKFVNILSILTSVDFSSNNFEGTIPEEIMNFTG 698

Query: 474 LYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV 533
           L+ LN+SHNAL G IPSS GNLKQ++SLDLS N   G+IP+QLASLNFLS LNLSYN LV
Sbjct: 699 LFCLNLSHNALAGQIPSSMGNLKQLQSLDLSSNRFDGEIPSQLASLNFLSYLNLSYNRLV 758

Query: 534 GQIPTAKHV 542
           G+IP    +
Sbjct: 759 GKIPVGTQL 767

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735657|emb|CBI18151.3| unnamed protein product [Vitis vinifera]

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 243/637 (38%), Positives = 326/637 (51%), Gaps = 117/637 (18%)

Query: 2   KNSFIFDVDSTPPAKMSQWSDSTNCCDWTGVDCDEAGHVIGLDLSAEPILIGRLENASGL 61
           K++  F+ D++   K+  W+ S +CC W GV  D  GHV  L+L+        + +    
Sbjct: 49  KSTLKFNADAS--NKLVSWNQSADCCSWGGVTWDATGHV-SLNLANNTFFSSEIPS---- 101

Query: 62  FSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGF-SWR 120
                     G   L NLTYLNLS  GF+G+IP EIS L RLVT+D+SS   + G  + +
Sbjct: 102 ----------GFDKLGNLTYLNLSKAGFSGQIPIEISRLTRLVTIDISSFNDLFGTPAPK 151

Query: 121 LGIPNFNFF-QNLKELRELYLDNVDLSGLGTERCKALSF-LPNLQVLNLSSCLLLGPINH 178
           L  PN     QNLKELREL+LD VD+S  G E C+ALS  +PNL+VL+LS C L GPI+ 
Sbjct: 152 LEQPNLRMLVQNLKELRELHLDGVDISAQGKEWCQALSSSVPNLRVLSLSRCFLSGPIDS 211

Query: 179 HLANLRSHSQFF------------FVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLD 226
            L  LRS S               F+AN  NLT+L LS C L G +PE I QV  L+ LD
Sbjct: 212 SLVKLRSLSVVHLNYNNFTAPVPDFLANFSNLTSLSLSFCRLYGTFPENIFQVPALQILD 271

Query: 227 LSYNPLLQGSLPNFPKN-SYLQNLNLANTSFSGILPD--------------------PIG 265
           LS N    G +P+   N + L  L+L++  F+G +P                     P+ 
Sbjct: 272 LSNN---HGPIPSSIANLTRLLYLDLSSNGFTGSIPSFRFLNLLNLDLHQNLLHGDLPLS 328

Query: 266 ILKY--LTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIP--SFHESRNLNYLD 321
           +  +  L ++ L    F+G IP S  +L  L  ++ S N+ SG +    F E  NL  L 
Sbjct: 329 LFSHPSLQKIQLNQNQFSGSIPLSVFDLRALRVLELSFNNVSGTLELSKFQELGNLTTLS 388

Query: 322 LSSNNLN--------------GVLNLGRNNLNGTL------SDII----------FPRNC 351
           LS N L+                L+L  N L G +      S  +           P + 
Sbjct: 389 LSHNKLSINVDKPFPNLPPYLFTLDLHSNLLRGRIPTPPQFSSYVDYSNNSFISSIPEDI 448

Query: 352 GLHI-----LDLSGNQLQGVVPKSLANCNMLQVLDFR------------NNHISDNFPCW 394
           G +I       LS N + G++P+S+ N   +QVLD              NN I D FPCW
Sbjct: 449 GSYISYVIFFSLSKNNISGIIPESICNATNVQVLDLSDNALKLEVLNLGNNRIDDKFPCW 508

Query: 395 LRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIV-DFASNKF---------GGRLSQK 444
           L+N SSL+VLVLR+N F G I  P +N +WP+LQI+ +F+   +         G  +   
Sbjct: 509 LKNMSSLRVLVLRANRFHGPIGCPNSNSTWPMLQIILEFSELYYQDAVTVTSKGQEMELV 568

Query: 445 CSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLS 504
              TL      ++ +   Q  EEMG F SLY LN+S N  TG IPSS G L+Q+ESLDLS
Sbjct: 569 KVLTLFTSIDFSSNKFEGQIPEEMGNFISLYVLNLSGNGFTGQIPSSMGQLRQLESLDLS 628

Query: 505 MNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKH 541
            N+LSGKIP +L SL FLSVL+LS+N LVG IP+   
Sbjct: 629 RNHLSGKIPTELVSLTFLSVLDLSFNQLVGAIPSGNQ 665

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481298|ref|XP_003632604.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 239/603 (39%), Positives = 320/603 (53%), Gaps = 91/603 (15%)

Query: 1   MKNSFIFDVDSTPPAKMSQWSDSTNCCDWTGVDCDEAGHVIGLDLSAEPILIGRLENASG 60
           +KN+  F+V ++  +K+  W+ S +CC W GV  D  GHV+ LDLS++ I  G   N S 
Sbjct: 48  LKNTLKFNVAAS--SKLVSWNPSMDCCSWGGVTWDATGHVVALDLSSQSI-YGGFNNTSS 104

Query: 61  LFSLQYMQS-------------QFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLD 107
           +FSLQY+QS               G   L NL YLNLS+ GF+G+IP E+S L +LVT+D
Sbjct: 105 IFSLQYLQSLNLADNSFNSSQIPSGFGKLGNLMYLNLSNAGFSGQIPIEVSCLTKLVTID 164

Query: 108 LSSREPISGFSWRLGIPNFNF--------FQNLKELRELYLDNVDLSGLGTERCKALSF- 158
            S         + LG+P             QNL ELRELYL+ V++S  G E C+ALS  
Sbjct: 165 FSV--------FYLGVPTLKLENPNLRMLVQNLTELRELYLNGVNISAQGKEWCQALSSS 216

Query: 159 LPNLQVLNLSSCLLLGPINHHLANLRSHSQFF------------FVANLLNLTNLDLSQC 206
           +PNLQVL+L SC L GP++  L  LRS S               F+AN  NLT L LS C
Sbjct: 217 VPNLQVLSLPSCYLSGPLDSSLQKLRSLSSIRLDGNNFSAPVPEFLANFSNLTQLRLSSC 276

Query: 207 DLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGI 266
            L G +PEKI QV TL+ LDLS N LL GSLP FP+N  L+ L L +T FSG +P+ IG 
Sbjct: 277 GLNGTFPEKIFQVPTLQILDLSNNKLLLGSLPEFPQNGSLETLVLPDTKFSGKVPNSIGN 336

Query: 267 LKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNN 326
           LK LTR++L  C+F+GPIP ST NL QL ++D S N FSGPIP F  S+NL  ++LS N 
Sbjct: 337 LKRLTRIELARCNFSGPIPNSTANLAQLVYLDLSENKFSGPIPPFSLSKNLTRINLSHNY 396

Query: 327 LNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNH 386
           L G   +  ++L+G ++         L ILDL  N L G +P  L +   LQ +   NN 
Sbjct: 397 LTGP--IPSSHLDGLVN---------LVILDLRDNSLNGSLPMPLFSLPSLQKIQLSNNQ 445

Query: 387 ISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRL----S 442
            S     +    S L  L L SNN  G I  P +      L I+D +SNKF G +     
Sbjct: 446 FSGPLSKFSVVPSVLDTLDLSSNNLEGQI--PVSIFDLQCLNILDLSSNKFNGTVLLSSF 503

Query: 443 QKCS--TTLGMRYQATN---------------------KRCRDQATEEMGRFKSLYALNM 479
           QK    TTL + Y   +                       C+ +   ++     L  L++
Sbjct: 504 QKLGNLTTLSLSYNNLSINSSVGNPTLPLLLNLTTLKLASCKLRTLPDLSTQSRLTYLDL 563

Query: 480 SHNALTGSIPS---SFGNLKQIESLDLSMNNLSGKIPAQLASLN-FLSVLNLSYNNLVGQ 535
           S N + G+IP+     GN   +  L+LS +NL   +   L++   +LS+L+L  N L GQ
Sbjct: 564 SDNQICGNIPNWIWKIGNCS-LAHLNLS-HNLLEDLQEPLSNFTPYLSILDLHSNQLHGQ 621

Query: 536 IPT 538
           IPT
Sbjct: 622 IPT 624

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37956237|gb|AAP20228.1| resistance protein SlVe1 precursor [Solanum lycopersicoides] gi|37956239|gb|AAP20229.1| resistance protein SlVe1 precursor [Solanum lycopersicoides]

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 231/578 (39%), Positives = 322/578 (55%), Gaps = 54/578 (9%)

Query: 7   FDVDSTPPAKMSQWSDSTN-CCDWTGVDCDEAGHVIGLDLSAEPILIGRLENASGLFSLQ 65
           F  DST   K+ +W+ +T+ CC+W GV CD +GHVI L+L  E I  G +ENAS LFSLQ
Sbjct: 48  FQYDSTLSNKLERWNHNTSECCNWNGVTCDLSGHVIALELDDEKISSG-IENASALFSLQ 106

Query: 66  YMQS------------QFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREP 113
           Y++S              G+ NLTNL YLNLS+ GF G+IP  +S L RLVTLDLS+  P
Sbjct: 107 YLESLNLAYNKFNVGIPVGIGNLTNLKYLNLSNAGFVGQIPMMLSRLTRLVTLDLSTLFP 166

Query: 114 ISGFSWRLGIPNF-NFFQNLKELRELYLDNVDLSGLGTERCKALS-FLPNLQVLNLSSCL 171
                 +L  PN  +F +N  ELRELYLD VDLS   T+ C++LS +LPNL VL+L +C 
Sbjct: 167 DFDQPLKLENPNLRHFIENSTELRELYLDGVDLSAQRTDWCQSLSSYLPNLTVLSLCACQ 226

Query: 172 LLGPINHHLANLR------------SHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQV 219
           + GPI+  L+ L+            S +   + AN  NLT L L  C+L+G +P+KI QV
Sbjct: 227 ISGPIDESLSKLQILSIIRLERNNLSTTVPGYFANFTNLTTLSLDSCNLQGAFPKKIFQV 286

Query: 220 STLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCS 279
             LE+LDLS N LL GS+P+FP+N  L+ ++L+ T+FSG LP+ I  L+ L+R+ L   +
Sbjct: 287 QVLESLDLSNNKLLSGSIPSFPRNGSLRRISLSYTNFSGSLPESISNLQNLSRLGLSDFN 346

Query: 280 FTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVL-------- 331
           F GPIP++  NL  L ++DFS N+F+G IP F  S+ L YLDLS N L G+L        
Sbjct: 347 FNGPIPSTMANLINLGYLDFSRNNFTGSIPHFQRSKKLTYLDLSRNGLTGLLSRAHFEGL 406

Query: 332 ------NLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSL-ANCNMLQVLDFRN 384
                 N+G N+LNGTL   IF     L  L L+ NQ  G V +   A+ ++L  +D RN
Sbjct: 407 SELVYINVGDNSLNGTLPAYIFEL-PSLQQLFLNSNQFVGQVDEFRNASSSLLDTVDLRN 465

Query: 385 NHISDNFPCWLRNASSLQVLVLRSNNFSGHISYP----RNNVSWPLLQIVDFASNKFGGR 440
           NH++ + P        L+VL L SN FSG ++       NN+S   L   +   +     
Sbjct: 466 NHLNGSIPKSTFEIGRLKVLSLSSNFFSGTVTLDLIGRLNNLSRLELSYNNLTVDASSSN 525

Query: 441 LSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNL--KQI 498
            +      L +   A+   CR Q   ++     +  L++S N + G+IP+    +  + +
Sbjct: 526 STSFTFPQLSILKLAS---CRLQKFPDLMNQSMMIHLDLSDNQIRGAIPNWIWGIGDQGL 582

Query: 499 ESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQI 536
             L+LS N L        AS N L VL+L  N L G +
Sbjct: 583 THLNLSFNQLEYMEQPYTASSN-LVVLDLHTNRLKGDL 619

Source: Solanum lycopersicoides

Species: Solanum lycopersicoides

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481300|ref|XP_002269481.2| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 247/583 (42%), Positives = 317/583 (54%), Gaps = 64/583 (10%)

Query: 16  KMSQWSDSTNCCDWTGVDCDEAGHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLAN 75
           K+  W  S +CC W GV  D  G V+ LDLS+E  + G L ++S +FSLQY+QS   LAN
Sbjct: 41  KLVSWIQSADCCSWGGVTWDATGRVVSLDLSSE-FISGELNSSSSIFSLQYLQS-LNLAN 98

Query: 76  -------------LTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGF-SWRL 121
                        L NLTYLNLS+ GF+G+IP EIS L +LVT+DLSS   I+G    +L
Sbjct: 99  NTFSSQIPAEFHKLGNLTYLNLSNAGFSGQIPIEISYLTKLVTIDLSSLYFITGIPKLKL 158

Query: 122 GIPNFNFF-QNLKELRELYLDNVDLSGLGTERCKALSF-LPNLQVLNLSSCLLLGPINHH 179
             PN     QNLK+LREL+LD V +S  G E C ALS  +PNLQVL+L SC L GPI++ 
Sbjct: 159 ENPNLRMLVQNLKKLRELHLDGVIISAQGKEWCWALSSSVPNLQVLSLYSCHLSGPIHYS 218

Query: 180 LANLRSHSQFF------------FVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDL 227
           L  L+S S+              F++N  NLT+L LS C L G +PEKI QV TL+TLDL
Sbjct: 219 LKKLQSLSRIRLDDNNIAAPVPEFLSNFSNLTHLQLSSCGLYGTFPEKIFQVPTLQTLDL 278

Query: 228 SYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTS 287
           SYN LLQGSLP FP+   L+ L L+ T FSG LP+ I  LK L R++L  C F+GPIPT 
Sbjct: 279 SYNKLLQGSLPEFPQGGCLETLVLSVTKFSGKLPNSIANLKRLARIELADCDFSGPIPTV 338

Query: 288 TTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIF 347
             NLTQL ++DFS N FSG IPSF  S+NL  +DLS            NNL G +S   +
Sbjct: 339 MANLTQLVYLDFSHNKFSGAIPSFSLSKNLTLIDLS-----------HNNLTGQISSSHW 387

Query: 348 PRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNAS-SLQVLVL 406
                L  +D   N L G +P  L +   LQ +   NN  S  F  +   +S  +  L L
Sbjct: 388 VGFVNLVTIDFCYNSLYGSLPMPLFSLPSLQKIKLNNNQFSGPFGEFPATSSHPMDTLDL 447

Query: 407 RSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLS----QKCS--TTLGMRYQATN-KR 459
             NN  G I  P +      L I+D +SNKF G +     QK    TTL + Y   +   
Sbjct: 448 SGNNLEGPI--PVSLFDLQHLNILDLSSNKFNGTVELSQFQKLGNLTTLSLSYNNLSINP 505

Query: 460 CRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASL 519
            R   T  +     L  L ++   L  ++P    +   +  LDLS N + GKIP  +  +
Sbjct: 506 SRSNPTSPL--LPILSTLKLASCKLR-TLP-DLSSQSMLVILDLSQNQIPGKIPNWIWKI 561

Query: 520 --NFLSVLNLSYNNLVG-QIPTAKHVLPNF----NLHRRQLQA 555
              FLS LNLS+N L G Q P +   LP F    +LH  QL+ 
Sbjct: 562 GNGFLSHLNLSHNLLEGLQEPLSN--LPPFLSTLDLHSNQLRG 602

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|49073108|gb|AAT51733.1| verticillium wilt disease resistance protein [Solanum aethiopicum]

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 230/575 (40%), Positives = 316/575 (54%), Gaps = 54/575 (9%)

Query: 10  DSTPPAKMSQWSDSTN-CCDWTGVDCDEAGHVIGLDLSAEPILIGRLENASGLFSLQYMQ 68
           DST   K+++W+D T+ CC+W GV C+  GHVI L+L  E I  G +EN+S LFSLQY++
Sbjct: 51  DSTLSKKLAKWNDMTSECCNWNGVTCNLFGHVIALELDDETISSG-IENSSALFSLQYLE 109

Query: 69  S------------QFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISG 116
           S              G+ NLTNL YLNLS+ GF G+IP  +S L RLVTLDLS+  P   
Sbjct: 110 SLNLADNMFNVGIPVGIDNLTNLKYLNLSNAGFVGQIPITLSRLTRLVTLDLSTILPFFD 169

Query: 117 FSWRLGIPNF-NFFQNLKELRELYLDNVDLSGLGTERCKALSF-LPNLQVLNLSSCLLLG 174
              +L  PN  +F +N  ELRELYLD VDLS   +E C++LS  LPNL VL+L  C + G
Sbjct: 170 QPLKLENPNLSHFIENSTELRELYLDGVDLSSQRSEWCQSLSLHLPNLTVLSLRDCQISG 229

Query: 175 PINHHLANLR------------SHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTL 222
           P++  L  L             S +   + AN  NLT  D   C+L+G +PE+I QVS L
Sbjct: 230 PLDESLTKLHFLSFVQLDQNNLSSTVPEYFANFSNLTTFDPGLCNLQGTFPERIFQVSVL 289

Query: 223 ETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTG 282
           E LDLS N LL GS+PNFP+   L+ + L+ T+FSG LPD I  L+ L+R++L  C+F G
Sbjct: 290 EILDLSNNKLLSGSIPNFPRYGSLRRILLSYTNFSGSLPDSISNLQNLSRLELSYCNFNG 349

Query: 283 PIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGV------------ 330
           PIP++  NLT L ++DFSSN+F+G IP F  S+ L YLDLS N L G+            
Sbjct: 350 PIPSTMANLTNLVYLDFSSNNFTGFIPYFQRSKKLTYLDLSRNGLTGLFSRAHSEGLSEF 409

Query: 331 --LNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSL-ANCNMLQVLDFRNNHI 387
             +NLG N+LNG L   IF     L  L L+ NQ  G V +   A+ + L ++D  NNH+
Sbjct: 410 VYMNLGNNSLNGILPAEIFELP-SLQQLFLNSNQFVGQVDELRNASSSPLDIIDLSNNHL 468

Query: 388 SDNFPCWLRNASSLQVLVLRSNNFSGHISYPR----NNVSWPLLQIVDFASNKFGGRLSQ 443
           + + P  +     L+VL L SN FSG +   R    +N+S   L   +   +      + 
Sbjct: 469 NGSIPNSMFEVRRLKVLSLSSNFFSGTVPLDRIGKLSNLSRLELSYNNLTVDASSSNSTS 528

Query: 444 KCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPS--SFGNLKQIESL 501
                L +   A+   CR Q   ++     +  L++S+N + G+IP+         +  L
Sbjct: 529 FTFPQLTILKLAS---CRLQKFPDLKNQSRMIHLDLSNNQIRGAIPNWIWGIGGGGLTHL 585

Query: 502 DLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQI 536
           +LS N L        AS N L VL+L  N L G +
Sbjct: 586 NLSFNQLEYVEQPYTASSN-LVVLDLHSNRLKGDL 619

Source: Solanum aethiopicum

Species: Solanum aethiopicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|34761800|gb|AAQ82053.1| verticillium wilt disease resistance protein precursor [Solanum torvum]

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 226/576 (39%), Positives = 324/576 (56%), Gaps = 54/576 (9%)

Query: 10  DSTPPAKMSQWSDSTN-CCDWTGVDCDEAGHVIGLDLSAEPILIGRLENASGLFSLQYMQ 68
           DS+   K+++W+ +T+ CC+W GV CD +GHVI L+L  E I  G +EN+S LFSLQY++
Sbjct: 48  DSSLSTKLARWNQNTSECCNWDGVTCDLSGHVIALELDNETISSG-IENSSALFSLQYLE 106

Query: 69  S------------QFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISG 116
                          G++NLTNL YLNLS+ GF G+IP  +S L RLVTLDLS+  P + 
Sbjct: 107 KLNLAYNRFSVGIPVGISNLTNLKYLNLSNAGFLGQIPMMLSRLTRLVTLDLSTLFPDAI 166

Query: 117 FSWRLGIPNF-NFFQNLKELRELYLDNVDLSGLGTERCKALS-FLPNLQVLNLSSCLLLG 174
              +L  PN  +F +N  ELRELYLD VDLS    E C++LS +LPNL VL+L +C + G
Sbjct: 167 HPLKLENPNLTHFIENSTELRELYLDGVDLSAQRAEWCQSLSSYLPNLTVLSLRTCQISG 226

Query: 175 PINHHLANLR------------SHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTL 222
           PI+  L+ L+            S +   + +N  NLT L L  C+L+G +PE+I QVS L
Sbjct: 227 PIDDSLSQLQFLSIIRLDQNNLSTTVPEYFSNFSNLTTLTLGSCNLQGTFPERIFQVSVL 286

Query: 223 ETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTG 282
           E L+LS N LL GS+ NFP+   L+ ++L+ TSFSG LP+ I  L+ L+R++L +C+F G
Sbjct: 287 EVLELSNNKLLSGSIQNFPRYGSLRRISLSYTSFSGSLPESISNLQNLSRLELSNCNFNG 346

Query: 283 PIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVL----------- 331
           PIP++  NLT L ++DFS N+F+G IP F  S+ L YLDLS N L G+L           
Sbjct: 347 PIPSTMANLTNLVYLDFSFNNFTGFIPYFQRSKKLTYLDLSRNGLTGLLSRAHFEGLSEL 406

Query: 332 ---NLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSL-ANCNMLQVLDFRNNHI 387
              +LG N+LNG L   IF     L  L L  NQ  G V +   A+ + L  +D RNNH+
Sbjct: 407 VYMSLGNNSLNGILPAEIFELP-SLQQLSLYSNQFVGQVDEFRNASSSPLDTIDLRNNHL 465

Query: 388 SDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPL--LQIVDFASNKFGGRLSQKC 445
           + + P  +     L+VL L  N FSG +S    ++   L  L  ++ + N      S   
Sbjct: 466 NGSIPKSMFEVGRLKVLSLSFNFFSGTVSL---DLIGKLSNLSKLELSYNNLTVDASSSN 522

Query: 446 STTLGMRYQATNK--RCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNL--KQIESL 501
           ST+      +  K   CR Q   ++     +  L++S N + G+IP+    +    +  L
Sbjct: 523 STSFAFPQLSILKLASCRLQKFPDLKNQSRMIHLDLSDNQIGGAIPNWIWGIGGGALAHL 582

Query: 502 DLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIP 537
           +LS N+L   +     + N L V +L  NN+ G +P
Sbjct: 583 NLSFNHLE-YVEQPYNASNNLVVFDLHSNNIKGDLP 617

Source: Solanum torvum

Species: Solanum torvum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139184|ref|XP_002323001.1| predicted protein [Populus trichocarpa] gi|222867631|gb|EEF04762.1| predicted protein [Populus trichocarpa]

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 235/594 (39%), Positives = 320/594 (53%), Gaps = 75/594 (12%)

Query: 1   MKNSFIFDVDSTPPAKMSQWSDSTNCCDWTGVDCDE-AGHVIGLDLSAEPILIGRLENAS 59
           +KN+ +FD   +  AK+ +W+ + +CCDW G+ CDE +G VI LDLS+E I  G L ++S
Sbjct: 36  LKNTLVFDQSVS--AKLVKWNSTPDCCDWPGITCDEGSGRVISLDLSSERI-TGGLGDSS 92

Query: 60  GLFSLQYMQS------------QFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLD 107
           GL+ LQ++QS              G ANLT+L  LNLS+ GFTG+IP + S L +LV+LD
Sbjct: 93  GLYRLQFLQSLNLSFNSFSTALPVGFANLTDLISLNLSNAGFTGQIPNDFSKLTKLVSLD 152

Query: 108 LSSREPISGFSWRLGIPNF-NFFQNLKELRELYLDNVDLSGLGTERCKALSF-LPNLQVL 165
           LS+       + +L  PNF    QNL  L EL LD V++S  G + CKALS  LPNL+VL
Sbjct: 153 LSALSFPGSPALKLEQPNFATLVQNLTHLTELLLDGVNISAHGNDWCKALSSSLPNLKVL 212

Query: 166 NLSSCLLLGPINHHLANLRSHSQFF------------FVANLLNLTNLDLSQCDLRGKYP 213
           ++S+C L GP++  LA L+S S               F+AN   LT L LS C L G +P
Sbjct: 213 SMSNCYLSGPLDASLAKLQSLSIIRLSGNNLSTPVPEFLANYSKLTALQLSSCQLNGIFP 272

Query: 214 EKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRV 273
           + I QV TLE LDL YN  LQGS P F +N  L+ L L+NT+FSG LP  IG L+ L+R+
Sbjct: 273 QAIFQVPTLEILDLQYNKFLQGSFPEFHQNLSLRTLLLSNTNFSGTLPQSIGELQKLSRI 332

Query: 274 DLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNL 333
           +L   +FTGPIP S  NLTQLF++D  SN F+G +PSF +S+NL Y+D+S N L G +  
Sbjct: 333 ELAGNNFTGPIPNSMANLTQLFYLDLLSNKFTGTLPSFRKSKNLTYVDVSHNQLKGEIPS 392

Query: 334 GRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPC 393
           G  +  G  S         L  +DL  N   G +P SL     LQ +   NN      P 
Sbjct: 393 G--HWEGLRS---------LTYVDLGYNAFNGSIPSSLFAIPSLQKIQLSNNRFGGQIPE 441

Query: 394 WLRNASS-LQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLS----QKCS-- 446
           +   +SS L  L L SN   G I  P +      L +++ +SN     L     QK    
Sbjct: 442 FPNVSSSLLDTLDLSSNKLEGPI--PSSVFGLAKLNVLELSSNMLNDTLQLHWIQKLPNL 499

Query: 447 TTLGMRYQATN----------------KRCRDQATEEMGRF------KSLYALNMSHNAL 484
           TTLG+ Y                    K+ R  A+ ++G F        L+ L++S N +
Sbjct: 500 TTLGLSYNNLTVKSSGGNSNMSSLPQIKKLR-LASCDLGMFPDLRNQSKLFHLDLSDNQI 558

Query: 485 TGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPT 538
           TG +P     L  ++ L+LS N L      +  SL  LS+L+L +N L G IP 
Sbjct: 559 TGPVPGWISELILLQYLNLSRNLLVDL--ERPLSLPGLSILDLHHNQLQGSIPV 610

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|237899609|gb|ACR33109.1| verticillium wilt disease resistance protein [Solanum lycopersicum]

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 233/626 (37%), Positives = 329/626 (52%), Gaps = 98/626 (15%)

Query: 7   FDVDSTPPAKMSQWSDSTN-CCDWTGVDCDEAGHVIGLDLSAEPILIGRLENASGLFSLQ 65
           F  DST   K+++W+ +T+ CC+W GV CD +GHVI L+L  E I  G +ENAS LFSLQ
Sbjct: 46  FQYDSTLSNKLARWNHNTSECCNWNGVTCDLSGHVIALELDDEKISSG-IENASALFSLQ 104

Query: 66  YMQS------------QFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREP 113
           Y++               G+ NLTNLTYLNLS+ GF G+IP  +S L RLVTLDLS+  P
Sbjct: 105 YLERLNLAYNKFNVGIPVGIGNLTNLTYLNLSNAGFVGQIPMMLSRLTRLVTLDLSTLFP 164

Query: 114 ISGFSWRLGIPNF-NFFQNLKELRELYLDNVDLSGLGTERCKALS-FLPNLQVLNLSSCL 171
                 +L  PN  +F +N  ELRELYLD VDLS   TE C++LS +LPNL VL+L +C 
Sbjct: 165 DFAQPLKLENPNLSHFIENSTELRELYLDGVDLSAQRTEWCQSLSSYLPNLTVLSLRTCR 224

Query: 172 LLGPINHHLANLR------------SHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQV 219
           + GPI+  L+ L             S +   + AN  NLT L LS C+L+G +P++I QV
Sbjct: 225 ISGPIDESLSKLHFLSFIRLDQNNLSTTVPEYFANFSNLTTLTLSSCNLQGTFPKRIFQV 284

Query: 220 STLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCS 279
             LE LDLS N LL GS+P FP+   L+ ++L+ T FSG LPD I  L+ L+R++L +C+
Sbjct: 285 PVLEFLDLSTNKLLSGSIPIFPQIGSLRTISLSYTKFSGSLPDTISNLQNLSRLELSNCN 344

Query: 280 FTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVL-------- 331
           F+ PIP++  NLT L ++DFS N+F+G +P F  ++ L YLDLS N L G+L        
Sbjct: 345 FSEPIPSTMANLTNLVYLDFSFNNFTGSLPYFQGAKKLIYLDLSRNGLTGLLSRAHFEGL 404

Query: 332 ------NLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSL-ANCNMLQVLDFRN 384
                 NLG N+LNG+L   IF     L  L L  NQ  G V +   A+ + L  +D RN
Sbjct: 405 SELVYINLGNNSLNGSLPAYIFELP-SLKQLFLYSNQFVGQVDEFRNASSSPLDTVDLRN 463

Query: 385 NHISDNFPCWLRNASSLQVLVLRSNNFSGHISYP----RNNVSWPLLQIVDFASNKFGGR 440
           NH++ + P  +     L+VL L SN F G +        +N+S   L   +   +     
Sbjct: 464 NHLNGSIPKSMFEVGRLKVLSLSSNFFRGTVPLDLIGRLSNLSRLELSYNNLTVDASSSN 523

Query: 441 LSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPS---------- 490
            +      L +   A+   CR Q   ++     +  L++S N + G+IP+          
Sbjct: 524 STSFTFPQLNILKLAS---CRLQKFPDLKNQSRMMHLDLSDNQILGAIPNWIWGIGGGGL 580

Query: 491 -----SFGNLKQIES-------------------------------LDLSMNNLSGKIPA 514
                SF  L+ +E                                +D S NNL+  IP 
Sbjct: 581 AHLNLSFNQLEYVEQPYTVSSNLVVLDLHSNRLKGDLLIPPSTAIYVDYSSNNLNNSIPT 640

Query: 515 QLA-SLNFLSVLNLSYNNLVGQIPTA 539
            +  SL F S  +++ N++ G IP +
Sbjct: 641 DIGRSLGFASFFSVANNSITGIIPES 666

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|237899605|gb|ACR33107.1| verticillium wilt disease resistance protein [Solanum lycopersicum]

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 233/626 (37%), Positives = 329/626 (52%), Gaps = 98/626 (15%)

Query: 7   FDVDSTPPAKMSQWSDSTN-CCDWTGVDCDEAGHVIGLDLSAEPILIGRLENASGLFSLQ 65
           F  DST   K+++W+ +T+ CC+W GV CD +GHVI L+L  E I  G +ENAS LFSLQ
Sbjct: 46  FQYDSTLSNKLARWNHNTSECCNWNGVTCDLSGHVIALELDDEKISSG-IENASALFSLQ 104

Query: 66  YMQS------------QFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREP 113
           Y++               G+ NLTNLTYLNLS+ GF G+IP  +S L RLVTLDLS+  P
Sbjct: 105 YLERLNLAYNKFNVGIPVGIGNLTNLTYLNLSNAGFVGQIPMMLSRLTRLVTLDLSTLFP 164

Query: 114 ISGFSWRLGIPNF-NFFQNLKELRELYLDNVDLSGLGTERCKALS-FLPNLQVLNLSSCL 171
                 +L  PN  +F +N  ELRELYLD VDLS   TE C++LS +LPNL VL+L +C 
Sbjct: 165 DFAQPLKLENPNLSHFIENSTELRELYLDGVDLSAQRTEWCQSLSSYLPNLTVLSLRTCR 224

Query: 172 LLGPINHHLANLR------------SHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQV 219
           + GPI+  L+ L             S +   + AN  NLT L LS C+L+G +P++I QV
Sbjct: 225 ISGPIDESLSKLHFLSFIRLDQNNLSTTVPEYFANFSNLTTLTLSSCNLQGTFPKRIFQV 284

Query: 220 STLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCS 279
             LE LDLS N LL GS+P FP+   L+ ++L+ T FSG LPD I  L+ L+R++L +C+
Sbjct: 285 PVLEFLDLSTNKLLSGSIPIFPQIGSLRTISLSYTKFSGSLPDTISNLQNLSRLELSNCN 344

Query: 280 FTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVL-------- 331
           F+ PIP++  NLT L ++DFS N+F+G +P F  ++ L YLDLS N L G+L        
Sbjct: 345 FSEPIPSTMANLTNLVYLDFSFNNFTGSLPYFQGAKKLIYLDLSRNGLTGLLSRAHFEGL 404

Query: 332 ------NLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSL-ANCNMLQVLDFRN 384
                 NLG N+LNG+L   IF     L  L L  NQ  G V +   A+ + L  +D RN
Sbjct: 405 SELVYINLGNNSLNGSLPAYIFELP-SLKQLFLYSNQFVGQVDEFRNASSSPLDTVDLRN 463

Query: 385 NHISDNFPCWLRNASSLQVLVLRSNNFSGHISYP----RNNVSWPLLQIVDFASNKFGGR 440
           NH++ + P  +     L+VL L SN F G +        +N+S   L   +   +     
Sbjct: 464 NHLNGSIPKSMFEVGRLKVLSLSSNFFRGTVPLDLIGRLSNLSRLELSYNNLTVDASSSN 523

Query: 441 LSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPS---------- 490
            +      L +   A+   CR Q   ++     +  L++S N + G+IP+          
Sbjct: 524 STSFTFPQLNILKLAS---CRLQKFPDLKNQSRMMHLDLSDNQILGAIPNWIWGIGGGGL 580

Query: 491 -----SFGNLKQIES-------------------------------LDLSMNNLSGKIPA 514
                SF  L+ +E                                +D S NNL+  IP 
Sbjct: 581 AHLNLSFNQLEYVEQPYTVSSNLVVLDLHSNRLKGDLLIPPSTAIYVDYSSNNLNNSIPT 640

Query: 515 QLA-SLNFLSVLNLSYNNLVGQIPTA 539
            +  SL F S  +++ N++ G IP +
Sbjct: 641 DIGRSLGFASFFSVANNSITGIIPES 666

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	562
TAIR|locus:2825762	994	RLP6 "AT1G45616" [Arabidopsis	0.507	0.286	0.315	3e-41
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.368	0.203	0.357	8.5e-38
TAIR|locus:2096339	786	RLP30 "receptor like protein 3	0.505	0.361	0.276	1.2e-37
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.487	0.306	0.299	1.3e-36
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.5	0.293	0.308	2.1e-35
TAIR|locus:2129246	891	RLP50 "receptor like protein 5	0.478	0.301	0.287	2.3e-35
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.834	0.536	0.263	1.4e-33
TAIR|locus:2825389	784	RLP11 "AT1G71390" [Arabidopsis	0.827	0.593	0.259	8.1e-33
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.779	0.350	0.243	2.7e-18
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.558	0.370	0.267	4.2e-16

TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 3.0e-41, Sum P(3) = 3.0e-41
 Identities = 102/323 (31%), Positives = 149/323 (46%)

Query:     6 IFDVDSTPPAKMSQWSDSTNCCDWTGVDCD-EAGHVIGLDLSAEPILIGRLENASGLFSL 64
             + DV S P  K   W+ +++CC W G+ CD ++G V GLDLS    L GRLE  S LF L
Sbjct:    66 LMDVTSYPKTK--SWTKNSDCCYWDGITCDTKSGKVTGLDLSCS-CLHGRLEPNSSLFRL 122

Query:    65 QYMQS------QFGXXXXXXXXXXXX-------SHCGFTGEIPTEISSLPRLVTLDLSSR 111
             Q++QS       F                    S   F+G I  ++  L  LV+LDLSS 
Sbjct:   123 QHLQSVNLAYNNFTNSPIPAEFSKFMRLERLNLSRSSFSGHISIKLLQLTNLVSLDLSSS 182

Query:   112 EPISGFSWRLGIPNFNFFQ--NLKELRELYLDNVDLSG-LGTERCKALSFLPXXXXXXXX 168
              P S  S  +  P F      N   LREL + +VD+S  +  E     S++         
Sbjct:   183 FPYSPSSLSIEKPLFLHLLALNFMNLRELDMSSVDISSAIPIE----FSYMWSLRSLTLK 238

Query:   169 XXXXXGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLS 228
                  G         R  +    + NL +++ LD    +L G  P   L+ ++L  L + 
Sbjct:   239 GCNLLG---------RFPNSVLLIPNLESIS-LD-HNLNLEGSLPN-FLRNNSLLKLSI- 285

Query:   229 YNPLLQGSLPNFPKN-SYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTS 287
             YN    G++PN   N  +L +L L  ++FSG +P  +  L +L+ + L   +F G IP+S
Sbjct:   286 YNTSFSGTIPNSISNLKHLTSLKLQQSAFSGRIPSSLRSLSHLSNLVLSENNFVGEIPSS 345

Query:   288 TTNLTQLFHVDFSSNHFSGPIPS 310
              +NL QL   D S N+ +G  PS
Sbjct:   346 VSNLKQLTLFDVSDNNLNGNFPS 368

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 8.5e-38, Sum P(3) = 8.5e-38
 Identities = 78/218 (35%), Positives = 109/218 (50%)

Query:    93 IPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTER 152
             IP E   L  L  LDLS +  +SG      IP  N  Q L +L  L L + D    G E 
Sbjct:   159 IPAEFDKLTGLERLDLS-QSSLSG-----QIP-INLLQ-LTKLVSLDLSSSDF--FGDES 208

Query:   153 CKALSFLPXXXXXXXXXXXXXGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKY 212
                LS                  ++     + S     F +N+ +L +L+L+ C+L G++
Sbjct:   209 FHYLSIDKSFLPLLARNLRNLRELDMSYVKISSEIPEEF-SNIRSLRSLNLNGCNLFGEF 267

Query:   213 PEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTR 272
             P  IL +  L+++DL  NP L+G+LP F +N+ L  L +  TSFSG +PD I  LK LT 
Sbjct:   268 PSSILLIPNLQSIDLGNNPNLRGNLPVFHENNSLLKLTILYTSFSGAIPDSISSLKNLTS 327

Query:   273 VDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPS 310
             + L    F+G IP S  NL+ L H+  SSN+  G IPS
Sbjct:   328 LTLSVSYFSGKIPFSLGNLSHLSHLSLSSNNLIGEIPS 365

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2096339 RLP30 "receptor like protein 30" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
 Identities = 85/307 (27%), Positives = 139/307 (45%)

Query:    10 DSTPPAKMSQWSDSTNCCDWTGVDCD-EAGHVIGLDLSAEPILIGRLENASGLFSLQYMQ 68
             +S P   +S W+ +++CC W GV CD E+G V+ LDLS   +L   L+  SGLF LQ +Q
Sbjct:    56 ESKPSPSLSSWNKTSDCCFWEGVTCDDESGEVVSLDLSYV-LLNNSLKPTSGLFKLQQLQ 114

Query:    69 SQFGXXXXXXXXXXXXSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNF 128
             +               S C   GE+ + + +L RL  LDLSS + ++G      +   N 
Sbjct:   115 N------------LTLSDCHLYGEVTSSLGNLSRLTHLDLSSNQ-LTG-EVLASVSKLNQ 160

Query:   129 FQNLKELRELYLDNVDLSGLGTERCKALSFLPXXXXXXXXXXXXXGPINHHLANLRS-HS 187
              ++L      +  N+  S     +  +L                    +    N+ S H 
Sbjct:   161 LRDLLLSENSFSGNIPTSFTNLTKLSSLDISSNQFTLENFSFILPNLTSLSSLNVASNHF 220

Query:   188 QFFFVANLLNLTNL---DLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLP--NFPK 242
             +    +++  L NL   D+ +    G +P  +  + +L+ + L  N  + G +   N   
Sbjct:   221 KSTLPSDMSGLHNLKYFDVRENSFVGTFPTSLFTIPSLQIVYLEGNQFM-GPIKFGNISS 279

Query:   243 NSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSN 302
             +S L +LNLA+  F G +P+ I  +  L  +DL   +  GPIPTS + L  L H+  S+N
Sbjct:   280 SSRLWDLNLADNKFDGPIPEYISEIHSLIVLDLSHNNLVGPIPTSISKLVNLQHLSLSNN 339

Query:   303 HFSGPIP 309
                G +P
Sbjct:   340 TLEGEVP 346

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
 Identities = 92/307 (29%), Positives = 135/307 (43%)

Query:    16 KMSQWSDSTNCCDWTGVDCD-EAGHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGXX 74
             K   W ++++CC+W GV C+ ++G VI L+LS    L GR  + S + +L ++ +     
Sbjct:     9 KTESWGNNSDCCNWEGVTCNAKSGEVIELNLSCSS-LHGRFHSNSSIRNLHFLTT----- 62

Query:    75 XXXXXXXXXXSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKE 134
                       SH  F G+I + I +L  L +LDLS       FS ++     N   NL  
Sbjct:    63 -------LDRSHNDFEGQITSSIENLSHLTSLDLSYNR----FSGQI----LNSIGNLSR 107

Query:   135 LRELYLDNVDLSGL---GTERCKALSFLPXXXXXXXXXX-XXXGPINH----HLANLRSH 186
             L  L L     SG           L+FL               G ++H     L+  R  
Sbjct:   108 LTSLDLSFNQFSGQIPSSIGNLSHLTFLGLSGNRFFGQIPSSIGNLSHLTFLGLSGNRFF 167

Query:   187 SQF-FFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN-FPKNS 244
              QF   +  L NLTNL LS     G+ P  I  +S L  L LS N    G +P+ F   +
Sbjct:   168 GQFPSSIGGLSNLTNLHLSYNKYSGQIPSSIGNLSQLIVLYLSVNNFY-GEIPSSFGNLN 226

Query:   245 YLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHF 304
              L  L+++     G  P+ +  L  L+ V L +  FTG +P + T+L+ L     S N F
Sbjct:   227 QLTRLDVSFNKLGGNFPNVLLNLTGLSVVSLSNNKFTGTLPPNITSLSNLMAFYASDNAF 286

Query:   305 SGPIPSF 311
             +G  PSF
Sbjct:   287 TGTFPSF 293

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 2.1e-35, Sum P(2) = 2.1e-35
 Identities = 98/318 (30%), Positives = 144/318 (45%)

Query:     6 IFDVDSTPPAKMSQWSDSTNCCDWTGVDCD-EAGHVIGLDLSAEPILIGRLENASGLFSL 64
             I+ ++S  P K   W ++++CC+W GV C+ ++G VI LDLS    L GR  + S + +L
Sbjct:    64 IYGIES--PRKTDSWGNNSDCCNWEGVTCNAKSGEVIELDLSCSS-LHGRFHSNSSIRNL 120

Query:    65 QYMQSQFGXXXXXXXXXXXXSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIP 124
              ++ +               S   F G+I + I +L  L  LDLSS      FS ++   
Sbjct:   121 HFLTT------------LDLSFNDFKGQITSSIENLSHLTYLDLSSNH----FSGQI--- 161

Query:   125 NFNFFQNLKELRELYLDNVDLSGLGTER-CKA--LSFLPXXXXXXXXXX-XXXGPINHHL 180
               N   NL  L  L L +   SG      C    L+FL               G ++H L
Sbjct:   162 -LNSIGNLSRLTYLNLFDNQFSGQAPSSICNLSHLTFLDLSYNRFFGQFPSSIGGLSH-L 219

Query:   181 ANLRSHSQFFF------VANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQ 234
               L   S  F       + NL NLT LDLS  +  G+ P  I  +S L  L L  N  + 
Sbjct:   220 TTLSLFSNKFSGQIPSSIGNLSNLTTLDLSNNNFSGQIPSFIGNLSQLTFLGLFSNNFV- 278

Query:   235 GSLPN-FPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQ 293
             G +P+ F   + L  L + +   SG  P+ +  L  L+ + L +  FTG +P + T+L+ 
Sbjct:   279 GEIPSSFGNLNQLTRLYVDDNKLSGNFPNVLLNLTGLSLLSLSNNKFTGTLPPNITSLSN 338

Query:   294 LFHVDFSSNHFSGPIPSF 311
             L   D S N F+G  PSF
Sbjct:   339 LMDFDASDNAFTGTFPSF 356

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 2.3e-35, Sum P(2) = 2.3e-35
 Identities = 91/316 (28%), Positives = 138/316 (43%)

Query:    18 SQWSDSTNCCDWTGVDCD-EAGHVIGLDLSAEPILIGRLENASGLFSLQYMQS-QFGXXX 75
             ++W ++T+CC W G+ CD + G V+ LDL     L GRL + S LF LQ++QS       
Sbjct:    58 AKWRNNTDCCSWGGISCDPKTGVVVELDLGNSD-LNGRLRSNSSLFRLQHLQSLDLSYND 116

Query:    76 XXXXXXXXXSH-----------CGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIP 124
                       +           C   GEIPT + SL  L  LDLS  + ++G        
Sbjct:   117 LSCTLPDSSGNFKYLRVLNLLGCNLFGEIPTSLRSLSYLTDLDLSYNDDLTG-------E 169

Query:   125 NFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPXXXXXXXXXXXXXGPINHHLANLR 184
               +   NLK LR L L +   +G        L++L              G +   + NL+
Sbjct:   170 ILDSMGNLKHLRVLSLTSCKFTGKIPSSLGNLTYL---TDLDLSWNYFTGELPDSMGNLK 226

Query:   185 S------HSQFFF------VANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPL 232
             S      H   FF      + +L NLT+LD+S+ +   + P+ +  ++ L    L     
Sbjct:   227 SLRVLNLHRCNFFGKIPTSLGSLSNLTDLDISKNEFTSEGPDSMSSLNRLTDFQLM---- 282

Query:   233 LQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLT 292
                 L N    S L N++L++  F  +LP  +  L  L   D+   SF+G IP+S   L 
Sbjct:   283 ----LLNL---SSLTNVDLSSNQFKAMLPSNMSSLSKLEAFDISGNSFSGTIPSSLFMLP 335

Query:   293 QLFHVDFSSNHFSGPI 308
              L  +D  +N FSGP+
Sbjct:   336 SLIKLDLGTNDFSGPL 351

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 1.4e-33, Sum P(2) = 1.4e-33
 Identities = 143/542 (26%), Positives = 221/542 (40%)

Query:    14 PAKMSQWSDSTNCCDWTGVDCD-EAGHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFG 72
             P K   W + ++CC W G+ CD + G VI +DL     L G   + S L  LQ     F 
Sbjct:    57 PLKTKSWENGSDCCHWDGITCDAKTGEVIEIDLMCS-CLHGWFHSNSNLSMLQNFH--F- 112

Query:    73 XXXXXXXXXXXXSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNF--NFFQ 130
                         S+   +G+I + I +L  L TLDLS     SG  W   IP+   N F 
Sbjct:   113 ------LTTLDLSYNHLSGQISSSIGNLSHLTTLDLSGNN-FSG--W---IPSSLGNLF- 159

Query:   131 NLKELRELYLDNV--DL-SGLGTERCKALSFLPXXXXXXXXXX-XXXGPINHHLANLR-- 184
             +L  L  LY +N   ++ S LG      L+FL               G +N  L+ LR  
Sbjct:   160 HLTSLH-LYDNNFGGEIPSSLGN--LSYLTFLDLSTNNFVGEIPSSFGSLNQ-LSILRLD 215

Query:   185 ----SHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN- 239
                 S +    V NL  L+ + LS     G  P  I  +S LE+   S N  + G++P+ 
Sbjct:   216 NNKLSGNLPLEVINLTKLSEISLSHNQFTGTLPPNITSLSILESFSASGNNFV-GTIPSS 274

Query:   240 ---FPKNS--YLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQL 294
                 P  +  +L N  L+ T   G +  P  +L     + L   +  GPIPTS + L  L
Sbjct:   275 LFTIPSITLIFLDNNQLSGTLEFGNISSPSNLLV----LQLGGNNLRGPIPTSISRLVNL 330

Query:   295 FHVDFSSNHFSGPIPSFHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIIFPRNC-GL 353
               +D S  +  G +  F+                                ++   +  G 
Sbjct:   331 RTLDLSHFNIQGQV-DFNIFSHLKLLGNLYLSHSNTTTTIDLNAVLSCFKMLISLDLSGN 389

Query:   354 HILDLSGNQLQ----GVVPK-SLANCNM------------LQVLDFRNNHISDNFPCWLR 396
             H+L  + + +     G++   +L+ C +            ++ LD  NN I    P WL 
Sbjct:   390 HVLVTNKSSVSDPPLGLIGSLNLSGCGITEFPDILRTQRQMRTLDISNNKIKGQVPSWL- 448

Query:   397 NASSLQVLVLRSNNFSGH---ISYPRNNVSWPLLQIVDFASNKFGGRL-SQKCSTTLGMR 452
                 L+ + + +NNF G        +  V  P ++    ++N F G++ S  CS    + 
Sbjct:   449 -LLQLEYMHISNNNFIGFERSTKLEKTVVPKPSMKHFFGSNNNFSGKIPSFICSLRSLII 507

Query:   453 YQATNKRCRDQATEEMGRFKS-LYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGK 511
                +N          +G+FKS L  LN+  N L+GS+P +   +K + SLD+S N L GK
Sbjct:   508 LDLSNNNFSGAIPPCVGKFKSTLSDLNLRRNRLSGSLPKTI--IKSLRSLDVSHNELEGK 565

Query:   512 IP 513
             +P
Sbjct:   566 LP 567

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2825389 RLP11 "AT1G71390" [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 8.1e-33, P = 8.1e-33
 Identities = 138/531 (25%), Positives = 220/531 (41%)

Query:    15 AKMSQWSDSTNCCDWTGVDCDE-AGHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGX 73
             +K S W+ +T+CC W GV CD+ +G VI LDL +  +L   L+  S LF LQY++     
Sbjct:    52 SKSSPWNKTTDCCSWDGVTCDDKSGQVISLDLRST-LLNSSLKTNSSLFRLQYLRH---- 106

Query:    74 XXXXXXXXXXXSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLG----IPNFNFF 129
                        S C   GEIP+ + +L RL  L+LSS   +    + +G    + N +  
Sbjct:   107 --------LDLSGCNLHGEIPSSLGNLSRLENLELSSNRLVGEIPYSIGNLKQLRNLSLG 158

Query:   130 QN--LKELRE------LYLDNVDL--SGLGTERCKALSFLPXXXXXXXXXXXXXGPINHH 179
              N  + E+        L LD +DL  + L  E   ++  L              G I   
Sbjct:   159 DNDLIGEIPSSLGNLSLLLD-LDLWNNSLVGEVPASIGNLNELRVMSLDRNSLSGSIPIS 217

Query:   180 LANLRSHSQF--FF---------VANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLS 228
               NL   S+F  FF         ++   NL   D+S     G +P+ +  + +L  + + 
Sbjct:   218 FTNLTKLSEFRIFFNNFTSLPSDLSGFHNLVTFDISANSFSGHFPKFLFSIPSLAWVSMD 277

Query:   229 YNPLLQGSLP--NFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPT 286
              N    G +   N   +S LQNL L      G +P+ I     L  +D+   + +GP+P 
Sbjct:   278 RNQF-SGPIEFANISSSSKLQNLILTRNKLDGSIPESISKFLNLVLLDVAHNNISGPVPR 336

Query:   287 STTNLTQLFHVDFSSNHFSGPIPSFHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDII 346
             S + L  L    FS+N   G +PS+                                + I
Sbjct:   337 SMSKLVSLRIFGFSNNKLEGEVPSW---------------LWRLSSTMLSHNSFSSFEKI 381

Query:   347 FPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVL 406
             + +   + +LDLS N  +G  P  +     L  LD  NN  + + P  LRN + L  L+L
Sbjct:   382 YSKETMIQVLDLSFNSFRGTFPVWICKLKGLHFLDLSNNLFNGSIPLCLRNFN-LTGLIL 440

Query:   407 RSNNFSGHI-SYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRY-QATNKRCRDQA 464
              +N FSG +     NN +   LQ +D + N+  G+  +      G+ +    + + +D  
Sbjct:   441 GNNKFSGTLPDIFANNTN---LQSLDVSGNQLEGKFPKSLINCKGLHFVNVESNKIKDTF 497

Query:   465 TEEMGRFKSLYALNMSHNALTGSI--PSSFGNLKQIESLDLSMNNLSGKIP 513
                +G   SL  L +  N   G +  PS     + +  +D+S N  SG +P
Sbjct:   498 PSWLGSLPSLQVLILRSNDFYGPLYHPSMSIGFQGLRIIDISHNGFSGVLP 548

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 2.7e-18, P = 2.7e-18
 Identities = 114/469 (24%), Positives = 180/469 (38%)

Query:    91 GEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGT 150
             G+IP  + +L  L  L L+S         +LG       Q+L  L++ YL+    + LG 
Sbjct:   157 GDIPETLGNLVNLQMLALASCRLTGPIPSQLG--RLVRVQSLI-LQDNYLEGPIPAELGN 213

Query:   151 ERCKALS-FLPXXXXXXXXXXXXXGPI-NHHLANLRSHSQFFFVANLLN----LTNLDLS 204
               C  L+ F               G + N  + NL ++S    + + L     L  L L 
Sbjct:   214 --CSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLM 271

Query:   205 QCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN-FPKNSYLQNLNLANTSFSGILPDP 263
                L+G  P+ +  +  L+TLDLS N L  G +P  F   S L +L LAN   SG LP  
Sbjct:   272 ANQLQGLIPKSLADLGNLQTLDLSANNLT-GEIPEEFWNMSQLLDLVLANNHLSGSLPKS 330

Query:   264 I-GILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIP-SFHEXXXXXXXX 321
             I      L ++ L     +G IP   +    L  +D S+N  +G IP +  E        
Sbjct:   331 ICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLY 390

Query:   322 XXXXXXXXXXXXXXXXXXXXXXDIIFPRNC-G-----------LHILDLSGNQLQGVVPK 369
                                    +++  N  G           L +L L  N+  G +P+
Sbjct:   391 LHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQ 450

Query:   370 SLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQI 429
              + NC  L+++D   NH     P  +     L +L LR N   G +     N     L I
Sbjct:   451 EIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQ--LNI 508

Query:   430 VDFASNKFGGRLSQKCSTTLGM-RYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSI 488
             +D A N+  G +        G+ +    N   +    + +   ++L  +N+SHN L G+I
Sbjct:   509 LDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTI 568

Query:   489 PSSFGNLKQIESLDLSMNNLSGKIPAQXXXXXXXXXXXXXXXXXVGQIP 537
                 G+   + S D++ N    +IP +                  G+IP
Sbjct:   569 HPLCGSSSYL-SFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIP 616

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 4.2e-16, P = 4.2e-16
 Identities = 91/340 (26%), Positives = 138/340 (40%)

Query:   192 VANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSY-LQNLN 250
             + +L  L NL L+  +L G+ P  +  +S L  L L++N L+ G +P    N   L+ ++
Sbjct:   202 IGDLKQLRNLSLASNNLIGEIPSSLGNLSNLVHLVLTHNQLV-GEVPASIGNLIELRVMS 260

Query:   251 LANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIP- 309
               N S SG +P     L  L+   L S +FT   P   +    L + D S N FSGP P 
Sbjct:   261 FENNSLSGNIPISFANLTKLSIFVLSSNNFTSTFPFDMSIFHNLEYFDVSYNSFSGPFPK 320

Query:   310 SFHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIIFPRN-------------CGLHIL 356
             S                                 D+I  RN               L  L
Sbjct:   321 SLLLIPSLESIYLQENQFTGPIEFANTSSSTKLQDLILGRNRLHGPIPESISRLLNLEEL 380

Query:   357 DLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHIS 416
             D+S N   G +P +++    L  LD   N++    P  L     L  +VL  N+FS   S
Sbjct:   381 DISHNNFTGAIPPTISKLVNLLHLDLSKNNLEGEVPACLWR---LNTMVLSHNSFS---S 434

Query:   417 YPRNNVSWPLLQIVDFASNKFGGRLSQK-CS-TTLGMRYQATNKRCRDQATEEMGRFK-S 473
             +   +    L++ +D  SN F G +    C  ++LG     +N          +  F  S
Sbjct:   435 FENTSQEEALIEELDLNSNSFQGPIPYMICKLSSLGF-LDLSNNLFSGSIPSCIRNFSGS 493

Query:   474 LYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP 513
             +  LN+  N  +G++P  F    ++ SLD+S N L GK P
Sbjct:   494 IKELNLGDNNFSGTLPDIFSKATELVSLDVSHNQLEGKFP 533

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00001335001 SubName- Full=Chromosome chr8 scaffold_115, whole genome shotgun sequence; (747 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	562
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-55
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	9e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-04
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.001
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.001
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.001

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  199 bits (507), Expect = 7e-55
 Identities = 183/584 (31%), Positives = 269/584 (46%), Gaps = 111/584 (19%)

Query: 13  PPAKMSQWSDSTNCCDWTGVDCDEAGHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFG 72
           P   +S W+ S + C W G+ C+ +  V+ +DLS + I  G++  +S +F L Y+Q+   
Sbjct: 44  PLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNI-SGKI--SSAIFRLPYIQT--- 97

Query: 73  LANLTN-----------------LTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPIS 115
             NL+N                 L YLNLS+  FTG IP    S+P L TLDLS+   +S
Sbjct: 98  -INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNM-LS 153

Query: 116 GFSWRLGIPN-FNFFQNLKELRELYLDNVDLSG--LGTERCKALSFLPNLQVLNLSSCLL 172
           G      IPN    F +LK L        DL G  L  +   +L+ L +L+ L L+S  L
Sbjct: 154 G-----EIPNDIGSFSSLKVL--------DLGGNVLVGKIPNSLTNLTSLEFLTLASNQL 200

Query: 173 LGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPL 232
           +G I   L  ++S    +   N            +L G+ P +I  +++L  LDL YN L
Sbjct: 201 VGQIPRELGQMKSLKWIYLGYN------------NLSGEIPYEIGGLTSLNHLDLVYNNL 248

Query: 233 LQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLT 292
                                   +G +P  +G LK L  + L     +GPIP S  +L 
Sbjct: 249 ------------------------TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ 284

Query: 293 QLFHVDFSSNHFSGPIPSF-HESRNLNYLDLSSNNLNG-------------VLNLGRNNL 338
           +L  +D S N  SG IP    + +NL  L L SNN  G             VL L  N  
Sbjct: 285 KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344

Query: 339 NGTLSDIIFPRNCGLH----ILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCW 394
           +G +     P+N G H    +LDLS N L G +P+ L +   L  L   +N +    P  
Sbjct: 345 SGEI-----PKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS 399

Query: 395 LRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKC--STTLGMR 452
           L    SL+ + L+ N+FSG +  P      PL+  +D ++N   GR++ +     +L M 
Sbjct: 400 LGACRSLRRVRLQDNSFSGEL--PSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQML 457

Query: 453 YQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKI 512
             A NK        +    K L  L++S N  +G++P   G+L ++  L LS N LSG+I
Sbjct: 458 SLARNKFFGG--LPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEI 515

Query: 513 PAQLASLNFLSVLNLSYNNLVGQIPTA---KHVLPNFNLHRRQL 553
           P +L+S   L  L+LS+N L GQIP +     VL   +L + QL
Sbjct: 516 PDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 74.5 bits (183), Expect = 5e-14
 Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 3/94 (3%)

Query: 457 NKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQL 516
           N+  R     ++ + + L ++N+S N++ G+IP S G++  +E LDLS N+ +G IP  L
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 517 ASLNFLSVLNLSYNNLVGQIPTAKHVLPNFNLHR 550
             L  L +LNL+ N+L G++P A        LHR
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPAALGGRL---LHR 517

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.1 bits (138), Expect = 1e-08
 Identities = 25/62 (40%), Positives = 38/62 (61%)

Query: 476 ALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQ 535
            L + +  L G IP+    L+ ++S++LS N++ G IP  L S+  L VL+LSYN+  G 
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 536 IP 537
           IP
Sbjct: 482 IP 483

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.1 bits (130), Expect = 1e-07
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 230 NPLLQGSLPN-FPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTST 288
           N  L+G +PN   K  +LQ++NL+  S  G +P  +G +  L  +DL   SF G IP S 
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 289 TNLTQLFHVDFSSNHFSGPIPS 310
             LT L  ++ + N  SG +P+
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.4 bits (123), Expect = 1e-06
 Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 5/108 (4%)

Query: 249 LNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPI 308
           L L N    G +P+ I  L++L  ++L   S  G IP S  ++T L  +D S N F+G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 309 P-SFHESRNLNYLDLSSNNLNGVL--NLGRNNLNGTLSDIIFPRNCGL 353
           P S  +  +L  L+L+ N+L+G +   LG   L+    +  F  N GL
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN--FTDNAGL 528

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.8 bits (119), Expect = 3e-06
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 331 LNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDN 390
           L L    L G + + I  +   L  ++LSGN ++G +P SL +   L+VLD   N  + +
Sbjct: 423 LGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 391 FPCWLRNASSLQVLVLRSNNFSGHI 415
            P  L   +SL++L L  N+ SG +
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 57/287 (19%), Positives = 91/287 (31%), Gaps = 45/287 (15%)

Query: 73  LANLTNLTYLNLSHCGFTGE----IPTEISSLPRLVTLDLSSREPI-SGFSWRLGIPNFN 127
           L  L  L  L L       E    + + +   P L  L LS  E        +  +    
Sbjct: 19  LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLL---Q 75

Query: 128 FFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLAN-LRSH 186
                  L+EL L +  L   G    ++L    +LQ L L++  L       LA  L+  
Sbjct: 76  GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDL 135

Query: 187 SQFFFVANLLNLTNLDLSQCDLRGKYPEKILQV----STLETLDLSYNPLLQGSLPN--- 239
                      L  L L +  L G   E + +       L+ L+L+ N +    +     
Sbjct: 136 P--------PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE 187

Query: 240 -FPKNSYLQNLNLANTSF----SGILPDPIGILKYLTRVDLRSCSFTGPI-----PTSTT 289
               N  L+ L+L N       +  L + +  LK L  ++L   + T            +
Sbjct: 188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLS 247

Query: 290 NLTQLFHVDFSSNH--------FSGPIPSFHESRNLNYLDLSSNNLN 328
               L  +  S N          +  +    E  +L  LDL  N   
Sbjct: 248 PNISLLTLSLSCNDITDDGAKDLAEVLA---EKESLLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 48.0 bits (114), Expect = 9e-06
 Identities = 68/246 (27%), Positives = 103/246 (41%), Gaps = 17/246 (6%)

Query: 157 SFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKI 216
           S    L   +LS  L L  ++   + + S      + NLL L +LDL+   LR    E +
Sbjct: 56  SNTLLLLPSSLSRLLSLDLLSP--SGISSLDGSENLLNLLPLPSLDLNLNRLRSNISE-L 112

Query: 217 LQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLR 276
           L+++ L +LDL  N +           S L+ L+L++      LP P+  L  L  +DL 
Sbjct: 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLS 171

Query: 277 SCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSN----------N 326
               +  +P   +NL+ L ++D S N  S   P       L  LDLS+N          N
Sbjct: 172 FNDLSD-LPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSN 230

Query: 327 LNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNH 386
           L  +  L  +N               L  LDLS NQ+  +   SL +   L+ LD   N 
Sbjct: 231 LKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSIS--SLGSLTNLRELDLSGNS 288

Query: 387 ISDNFP 392
           +S+  P
Sbjct: 289 LSNALP 294

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.5 bits (101), Expect = 1e-05
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 330 VLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHI 387
            L+L  N L   + D  F     L +LDLSGN L  + P++ +    L+ LD   N++
Sbjct: 4   SLDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.5 bits (101), Expect = 1e-05
 Identities = 24/60 (40%), Positives = 35/60 (58%)

Query: 473 SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 532
           +L +L++S+N LT     +F  L  ++ LDLS NNL+   P   + L  L  L+LS NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.7 bits (111), Expect = 3e-05
 Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 2/75 (2%)

Query: 192 VANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLP-NFPKNSYLQNLN 250
           ++ L +L +++LS   +RG  P  +  +++LE LDLSYN    GS+P +  + + L+ LN
Sbjct: 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS-FNGSIPESLGQLTSLRILN 496

Query: 251 LANTSFSGILPDPIG 265
           L   S SG +P  +G
Sbjct: 497 LNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.3 bits (110), Expect = 4e-05
 Identities = 26/87 (29%), Positives = 47/87 (54%)

Query: 201 LDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGIL 260
           L L    LRG  P  I ++  L++++LS N +     P+    + L+ L+L+  SF+G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 261 PDPIGILKYLTRVDLRSCSFTGPIPTS 287
           P+ +G L  L  ++L   S +G +P +
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAA 509

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 9e-05
 Identities = 19/60 (31%), Positives = 27/60 (45%)

Query: 352 GLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNF 411
            L  LDLS N+L  +   +      L+VLD   N+++   P       SL+ L L  NN 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 40/172 (23%), Positives = 63/172 (36%), Gaps = 28/172 (16%)

Query: 78  NLTYLNLSHCGFTGEIPTEISSL----PRLVTLDLSSREPISGFSWRLGIPNFNFFQNLK 133
            L  L L      G     ++        L  L+L++   I       GI      + LK
Sbjct: 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN-NGIGDA----GIRAL--AEGLK 190

Query: 134 ELRELYLDNVDLSGLGTERCKALS----FLPNLQVLNLSSCLLLGPINHHLAN-LRSHSQ 188
               L + +++ +GL  E   AL+     L +L+VLNL    L       LA+ L S + 
Sbjct: 191 ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNI 250

Query: 189 FFFVANLLNLTNLDLSQCDLRGKYPEKILQV----STLETLDLSYNPLLQGS 236
                   +L  L LS  D+     + + +V     +L  LDL  N   +  
Sbjct: 251 --------SLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG 294

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 44.5 bits (105), Expect = 2e-04
 Identities = 67/241 (27%), Positives = 93/241 (38%), Gaps = 59/241 (24%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNL 132
           L+  TNL  L LS C    E+P+ I  L +L  LD+S  E +       GI       NL
Sbjct: 653 LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILP--TGI-------NL 703

Query: 133 KELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLG------PINHHLANLRSH 186
           K L  L     +LSG     C  L   P++   N+S   L        P N  L NL   
Sbjct: 704 KSLYRL-----NLSG-----CSRLKSFPDIST-NISWLDLDETAIEEFPSNLRLENL--- 749

Query: 187 SQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVST---------LETLDLSYNPLL---Q 234
                          +L  C+++ +   + +Q  T         L  L LS  P L    
Sbjct: 750 --------------DELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP 795

Query: 235 GSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQL 294
            S+ N  K   L++L + N      LP  I  L+ L  +DL  CS     P  +TN++ L
Sbjct: 796 SSIQNLHK---LEHLEIENCINLETLPTGIN-LESLESLDLSGCSRLRTFPDISTNISDL 851

Query: 295 F 295
            
Sbjct: 852 N 852

syringae 6; Provisional. Length = 1153

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 15/85 (17%)

Query: 308 IPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVV 367
           I      +++N   LS N++ G +        G+++         L +LDLS N   G +
Sbjct: 438 ISKLRHLQSIN---LSGNSIRGNIPPSL----GSIT--------SLEVLDLSYNSFNGSI 482

Query: 368 PKSLANCNMLQVLDFRNNHISDNFP 392
           P+SL     L++L+   N +S   P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 75/339 (22%), Positives = 111/339 (32%), Gaps = 82/339 (24%)

Query: 130 QNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHH---LANLRSH 186
           + L +L  L +  ++ + LG E  KAL+    L+    S   L   +N        L+S 
Sbjct: 17  ELLPKLLCLQVLRLEGNTLGEEAAKALA--SALRP-QPSLKELCLSLNETGRIPRGLQSL 73

Query: 187 SQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYL 246
            Q         L  LDLS                       +  P   G L +  ++S L
Sbjct: 74  LQGL--TKGCGLQELDLSDN---------------------ALGPDGCGVLESLLRSSSL 110

Query: 247 QNLNLANTSFS-GILPDPIGILKY----LTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSS 301
           Q L L N       L      LK     L ++ L      G    S   L +        
Sbjct: 111 QELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG---ASCEALAKALRA---- 163

Query: 302 NHFSGPIPSFHESRNLNYLDLSSNNLN--GVLNLGRNNLNGTLSDIIFPRNCGLHILDLS 359
                      E      L+L++N +   G+  L                NC L +LDL+
Sbjct: 164 ------NRDLKE------LNLANNGIGDAGIRALAE----------GLKANCNLEVLDLN 201

Query: 360 GNQL--QGV-----VPKSLANCNMLQVLDFRNNHISDNFPCWLRNA-----SSLQVLVLR 407
            N L  +G         SL +   L+VL+  +N+++D     L +A      SL  L L 
Sbjct: 202 NNGLTDEGASALAETLASLKS---LEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLS 258

Query: 408 SNNF--SGHISYPRNNVSWPLLQIVDFASNKFGGRLSQK 444
            N+    G             L  +D   NKFG   +Q 
Sbjct: 259 CNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQL 297

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 53/205 (25%), Positives = 82/205 (40%), Gaps = 38/205 (18%)

Query: 347 FPRNCGLHILDLSGNQLQGVVPKSLANC---NMLQVLDFRNNHISDN----FPCWLR-NA 398
             + CGL  LDLS N L       L +    + LQ L   NN + D         L+   
Sbjct: 77  LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLP 136

Query: 399 SSLQVLVLRSNNFSGHISYPRNNV--SWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQAT 456
            +L+ LVL  N   G           +   L+ ++ A+N  G           G+R  A 
Sbjct: 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA---------GIRALA- 186

Query: 457 NKRCRDQATEEMGRFKSLYALNMSHNALT----GSIPSSFGNLKQIESLDLSMNNLSGKI 512
                    E +    +L  L++++N LT     ++  +  +LK +E L+L  NNL+   
Sbjct: 187 ---------EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG 237

Query: 513 PAQLASLNF-----LSVLNLSYNNL 532
            A LAS        L  L+LS N++
Sbjct: 238 AAALASALLSPNISLLTLSLSCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 63/227 (27%), Positives = 95/227 (41%), Gaps = 12/227 (5%)

Query: 123 IPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINH--HL 180
             N +    L  L  L LDN +++ +        S L  L + +     L  P+ +  +L
Sbjct: 106 RSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNL 165

Query: 181 ANLR-SHSQ----FFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQG 235
            NL  S +        ++NL NL NLDLS   +    P +I  +S LE LDLS N +++ 
Sbjct: 166 KNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIE- 223

Query: 236 SLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLF 295
            L +      L  L L+N      LP+ IG L  L  +DL +   +    +S  +LT L 
Sbjct: 224 LLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLR 280

Query: 296 HVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTL 342
            +D S N  S  +P       L  L L+       L L  N++    
Sbjct: 281 ELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNN 327

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	562
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.95
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.84
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.75
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.75
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.69
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.68
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.62
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.25
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.23
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.23
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.17
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.13
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.12
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.1
PLN03150	623	hypothetical protein; Provisional	99.1
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.1
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.1
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.09
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.06
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.05
PLN03150	623	hypothetical protein; Provisional	99.0
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.93
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.92
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.85
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.77
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.7
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.62
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.49
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.46
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.41
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.35
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.33
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.31
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.31
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.21
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.15
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.09
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.03
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.03
PRK15386	426	type III secretion protein GogB; Provisional	97.86
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.85
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.83
PRK15386	426	type III secretion protein GogB; Provisional	97.81
KOG4341	483	consensus F-box protein containing LRR [General fu	97.66
KOG4341	483	consensus F-box protein containing LRR [General fu	97.65
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.61
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.54
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.51
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.21
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.77
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	96.77
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.75
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.67
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.52
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.08
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.0
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.66
KOG4308	478	consensus LRR-containing protein [Function unknown	95.57
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.19
KOG4308	478	consensus LRR-containing protein [Function unknown	93.36
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.13
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	90.59
smart00370	26	LRR Leucine-rich repeats, outliers.	90.17
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.17
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.14
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.48
smart00370	26	LRR Leucine-rich repeats, outliers.	87.77
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.77
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	87.57
KOG3864	221	consensus Uncharacterized conserved protein [Funct	84.67

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=6.3e-55  Score=489.70  Aligned_cols=511  Identities=31%  Similarity=0.469  Sum_probs=364.5

Q ss_pred             CCCCCCCCCCCCCCcceeeeCCCCCeEEEECCCCCCcceeec-CCCCCcCcccccC---------ccc-cCCCCCCCEEe
Q 048635           15 AKMSQWSDSTNCCDWTGVDCDEAGHVIGLDLSAEPILIGRLE-NASGLFSLQYMQS---------QFG-LANLTNLTYLN   83 (562)
Q Consensus        15 ~~~~~w~~~~~~c~w~g~~c~~~~~v~~Ldl~~~~~~~~~~~-~~~~l~~l~~L~~---------~~~-l~~l~~L~~L~   83 (562)
                      +.+..|....+||.|.|++|+..++|+.||++++ .+.+.+. .+..+.+|+.|..         |.. +.++++|++|+
T Consensus        46 ~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~-~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~  124 (968)
T PLN00113         46 KYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGK-NISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLN  124 (968)
T ss_pred             ccCCCCCCCCCCCcCcceecCCCCcEEEEEecCC-CccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEE
Confidence            4578898788999999999987789999999998 7776651 1222233333322         222 23666677777


Q ss_pred             cCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCC
Q 048635           84 LSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQ  163 (562)
Q Consensus        84 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~  163 (562)
                      +++|++++.+|.  +.+++|++|++++|.+        ....|..++++++|++|++++|.+....+   ..+.++++|+
T Consensus       125 Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~--------~~~~p~~~~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~  191 (968)
T PLN00113        125 LSNNNFTGSIPR--GSIPNLETLDLSNNML--------SGEIPNDIGSFSSLKVLDLGGNVLVGKIP---NSLTNLTSLE  191 (968)
T ss_pred             CcCCccccccCc--cccCCCCEEECcCCcc--------cccCChHHhcCCCCCEEECccCcccccCC---hhhhhCcCCC
Confidence            777766655553  4566667777766653        34567778888888888888887765433   4667788888


Q ss_pred             EEecccCCCCCccchhcccccCCC------------CcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCC
Q 048635          164 VLNLSSCLLLGPINHHLANLRSHS------------QFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNP  231 (562)
Q Consensus       164 ~L~l~~n~~~~~~~~~~~~l~~~~------------~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~  231 (562)
                      +|++++|.+.+..|..+..+..+.            .+..++++++|++|++++|.+.+..|..+..+++|+.|++++|.
T Consensus       192 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  271 (968)
T PLN00113        192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK  271 (968)
T ss_pred             eeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCe
Confidence            888888888777776665554311            13445666777777777777766677777777777777777776


Q ss_pred             CCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCC-
Q 048635          232 LLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPS-  310 (562)
Q Consensus       232 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-  310 (562)
                      +.......+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|. 
T Consensus       272 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~  351 (968)
T PLN00113        272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN  351 (968)
T ss_pred             eeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChH
Confidence            5443334555667777777777777766777777777777777777777766777777777777777777777655443 


Q ss_pred             CCCCCCCCEEEcCCCCCc-------------ceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCC
Q 048635          311 FHESRNLNYLDLSSNNLN-------------GVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNML  377 (562)
Q Consensus       311 ~~~~~~L~~L~l~~n~l~-------------~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L  377 (562)
                      +..+++|+.|++++|.+.             ..++++.|.+.+.+|.. +..+++|+.|++++|.+++..|..+..+++|
T Consensus       352 l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L  430 (968)
T PLN00113        352 LGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS-LGACRSLRRVRLQDNSFSGELPSEFTKLPLV  430 (968)
T ss_pred             HhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHH-HhCCCCCCEEECcCCEeeeECChhHhcCCCC
Confidence            466677777777777654             34666667776666665 6667777778887777777777777777778


Q ss_pred             CEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhh-
Q 048635          378 QVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQAT-  456 (562)
Q Consensus       378 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~-  456 (562)
                      +.|++++|.+.+..+..+..+++|+.|++++|.+.+..  +..+ ..++|+.|++++|++.+..|..+.....+..+.. 
T Consensus       431 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~--p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls  507 (968)
T PLN00113        431 YFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGL--PDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLS  507 (968)
T ss_pred             CEEECcCCcccCccChhhccCCCCcEEECcCceeeeec--Cccc-ccccceEEECcCCccCCccChhhhhhhccCEEECc
Confidence            88888888777777777777778888888888776543  3332 4577888888888888777765544334444333 


Q ss_pred             hCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceecC
Q 048635          457 NKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQI  536 (562)
Q Consensus       457 ~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~  536 (562)
                      .+.+.+.+|..+..+++|++|++++|.+++.+|..|..+++|++|+|++|++++.+|..+..+++|++|++++|++.+.+
T Consensus       508 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~  587 (968)
T PLN00113        508 ENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSL  587 (968)
T ss_pred             CCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeC
Confidence            55677788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCCCCCC
Q 048635          537 PTAKHVL  543 (562)
Q Consensus       537 p~~~~~~  543 (562)
                      |...++.
T Consensus       588 p~~~~~~  594 (968)
T PLN00113        588 PSTGAFL  594 (968)
T ss_pred             CCcchhc
Confidence            8765543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=8.8e-47  Score=423.90  Aligned_cols=468  Identities=31%  Similarity=0.433  Sum_probs=344.6

Q ss_pred             ccccCCCCCCCEEecCCccCcccCCccC-CCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCC
Q 048635           70 QFGLANLTNLTYLNLSHCGFTGEIPTEI-SSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGL  148 (562)
Q Consensus        70 ~~~l~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~  148 (562)
                      +..|..+++|++|+|++|++++.+|..+ ..+++|++|++++|.+.        ...|.  +.+++|++|++++|.+...
T Consensus        86 ~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~--------~~~p~--~~l~~L~~L~Ls~n~~~~~  155 (968)
T PLN00113         86 SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFT--------GSIPR--GSIPNLETLDLSNNMLSGE  155 (968)
T ss_pred             ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccc--------cccCc--cccCCCCEEECcCCccccc
Confidence            5678899999999999999998888775 49999999999999853        33332  5689999999999998754


Q ss_pred             CCccccccCCCCCCCEEecccCCCCCccchhcccccCCC------------CcccccCCCCCCEEEccCCcCcccCChhh
Q 048635          149 GTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHS------------QFFFVANLLNLTNLDLSQCDLRGKYPEKI  216 (562)
Q Consensus       149 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~------------~~~~l~~l~~L~~L~l~~~~~~~~~~~~l  216 (562)
                      .+   ..+..+++|++|++++|.+.+..|..+..+..++            .|..++++++|++|++++|.+.+..|..+
T Consensus       156 ~p---~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l  232 (968)
T PLN00113        156 IP---NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI  232 (968)
T ss_pred             CC---hHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhH
Confidence            43   5688999999999999999988887766554421            13445566666666666666666666666


Q ss_pred             hCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCe
Q 048635          217 LQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFH  296 (562)
Q Consensus       217 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  296 (562)
                      ..+++|++|++++|.+.......+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.
T Consensus       233 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  312 (968)
T PLN00113        233 GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI  312 (968)
T ss_pred             hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcE
Confidence            66666666666666554333345556666666777666666666666666666777777766666666666666667777


Q ss_pred             eeCcCCcccccCCC-CCCCCCCCEEEcCCCCCc-------------ceEECCCCcCcccCCccccCCCCCcCEEECcCCc
Q 048635          297 VDFSSNHFSGPIPS-FHESRNLNYLDLSSNNLN-------------GVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQ  362 (562)
Q Consensus       297 L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~l~-------------~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~  362 (562)
                      |++++|.+.+..+. +..+++|+.|++++|.+.             ..+++++|++.+.+|.. +..+++|+.|++++|.
T Consensus       313 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~-~~~~~~L~~L~l~~n~  391 (968)
T PLN00113        313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG-LCSSGNLFKLILFSNS  391 (968)
T ss_pred             EECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh-HhCcCCCCEEECcCCE
Confidence            77777666654433 456667777777766654             34666666666666655 5555666777777777


Q ss_pred             ccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCC
Q 048635          363 LQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLS  442 (562)
Q Consensus       363 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  442 (562)
                      +.+.+|..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+.+..  +..+..+++|+.|++++|++.+.+|
T Consensus       392 l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~n~~~~~~p  469 (968)
T PLN00113        392 LEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI--NSRKWDMPSLQMLSLARNKFFGGLP  469 (968)
T ss_pred             ecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCcc--ChhhccCCCCcEEECcCceeeeecC
Confidence            66666666777777777777777777666777777777777777777776544  5555667777888888887777666


Q ss_pred             hhhhhhhhhhhhh-hhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCC
Q 048635          443 QKCSTTLGMRYQA-TNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNF  521 (562)
Q Consensus       443 ~~~~~~~~l~~~~-~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  521 (562)
                      ..+. ...+..+. ..+.+.+..|..+..+++|+.|++++|.+.+.+|+.+.++++|++|+|++|.+++.+|..+..+++
T Consensus       470 ~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  548 (968)
T PLN00113        470 DSFG-SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPV  548 (968)
T ss_pred             cccc-cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCccc
Confidence            5332 12233222 256677888999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEeCcCCcceecCCCCC---CCCccccchHHHHh
Q 048635          522 LSVLNLSYNNLVGQIPTAK---HVLPNFNLHRRQLQ  554 (562)
Q Consensus       522 L~~L~l~~n~l~~~~p~~~---~~~~~l~~~~~~l~  554 (562)
                      |++|++++|++++.+|..+   ..+..+++++|++.
T Consensus       549 L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~  584 (968)
T PLN00113        549 LSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH  584 (968)
T ss_pred             CCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence            9999999999999999765   44666777777665

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=5.7e-39  Score=307.84  Aligned_cols=310  Identities=24%  Similarity=0.253  Sum_probs=201.5

Q ss_pred             CCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEcc
Q 048635          197 NLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLR  276 (562)
Q Consensus       197 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~  276 (562)
                      +++.|+|.+|.|+....+.+..++.|++|||+.|.+.+...+.|..-.++++|+|++|.|+......|..+.+|..|.++
T Consensus       126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs  205 (873)
T KOG4194|consen  126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS  205 (873)
T ss_pred             ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecc
Confidence            46666666666665555666666667777777666666666666666667777777777766655666666667777777


Q ss_pred             CCcccccCCccCCCCCCCCeeeCcCCccccc-CCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCE
Q 048635          277 SCSFTGPIPTSTTNLTQLFHVDFSSNHFSGP-IPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHI  355 (562)
Q Consensus       277 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~  355 (562)
                      .|+++...+..|..+++|+.|++..|.+... ...|+++++|+.|.+..|.+.            .+.+.+|.++.++++
T Consensus       206 rNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~------------kL~DG~Fy~l~kme~  273 (873)
T KOG4194|consen  206 RNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS------------KLDDGAFYGLEKMEH  273 (873)
T ss_pred             cCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc------------cccCcceeeecccce
Confidence            7777655555566677777777777766543 345666777777777766665            455555666667777


Q ss_pred             EECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCC
Q 048635          356 LDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASN  435 (562)
Q Consensus       356 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n  435 (562)
                      |+|+.|++..+--+++.++++|+.|+++.|.|..+.++.+..+++|++|+|+.|+++...  ++.+..+..|++|.|++|
T Consensus       274 l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~--~~sf~~L~~Le~LnLs~N  351 (873)
T KOG4194|consen  274 LNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLD--EGSFRVLSQLEELNLSHN  351 (873)
T ss_pred             eecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCC--hhHHHHHHHhhhhccccc
Confidence            777777766666666667777777777777776666666666677777777777766555  556666667777777777


Q ss_pred             cCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcC---hhccCCCCCCeeeCCCCcccccC
Q 048635          436 KFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIP---SSFGNLKQIESLDLSMNNLSGKI  512 (562)
Q Consensus       436 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p---~~l~~l~~L~~L~Ls~n~l~~~~  512 (562)
                      ++.                       ......|..+++|+.|||++|.+++.+.   ..|..+++|+.|++.+|++..+.
T Consensus       352 si~-----------------------~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~  408 (873)
T KOG4194|consen  352 SID-----------------------HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP  408 (873)
T ss_pred             chH-----------------------HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc
Confidence            662                       1112234556667777777776654432   23566777777777777777555


Q ss_pred             hhhhcCCCCCCeEeCcCCcceecCCCCCCCC
Q 048635          513 PAQLASLNFLSVLNLSYNNLVGQIPTAKHVL  543 (562)
Q Consensus       513 p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~  543 (562)
                      ..+|.+++.|++|||.+|.|...-|.+|..+
T Consensus       409 krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m  439 (873)
T KOG4194|consen  409 KRAFSGLEALEHLDLGDNAIASIQPNAFEPM  439 (873)
T ss_pred             hhhhccCcccceecCCCCcceeecccccccc
Confidence            5666777777777777777766666666655

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=6.2e-38  Score=300.75  Aligned_cols=298  Identities=22%  Similarity=0.219  Sum_probs=220.2

Q ss_pred             CCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEcc
Q 048635          197 NLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLR  276 (562)
Q Consensus       197 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~  276 (562)
                      .|+.|||+.|.|+...-..|..-.++++|+|++|.+.......|..+.+|..|.|+.|+++...+..|..+++|+.|++.
T Consensus       150 alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLn  229 (873)
T KOG4194|consen  150 ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLN  229 (873)
T ss_pred             hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcc
Confidence            35555555555543333334344566666666666666666666666667777777777766666666677777777777


Q ss_pred             CCcccccCCccCCCCCCCCeeeCcCCcccccC-CCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCE
Q 048635          277 SCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPI-PSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHI  355 (562)
Q Consensus       277 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~  355 (562)
                      .|++.-.--..|.++++|+.|.+..|.+.... ..|..+.++++|+|..|++.            .+.+..+.++.+|+.
T Consensus       230 rN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~------------~vn~g~lfgLt~L~~  297 (873)
T KOG4194|consen  230 RNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ------------AVNEGWLFGLTSLEQ  297 (873)
T ss_pred             ccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh------------hhhcccccccchhhh
Confidence            77765332345667777777777777776533 34567777788888777776            555555777888888


Q ss_pred             EECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCC
Q 048635          356 LDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASN  435 (562)
Q Consensus       356 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n  435 (562)
                      |++++|.|..+.++++..+++|++|+|+.|+++...+..|..+..|++|+|+.|.+....  ...+..+.+|++|||+.|
T Consensus       298 L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~--e~af~~lssL~~LdLr~N  375 (873)
T KOG4194|consen  298 LDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLA--EGAFVGLSSLHKLDLRSN  375 (873)
T ss_pred             hccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHH--hhHHHHhhhhhhhcCcCC
Confidence            999999888888888888899999999999998888888888889999999999888665  566777888999999999


Q ss_pred             cCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhh
Q 048635          436 KFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQ  515 (562)
Q Consensus       436 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~  515 (562)
                      .++..+.                    .....+..+++|+.|++.+|++..+...+|..+++|++|||.+|.|..+-|++
T Consensus       376 ~ls~~IE--------------------Daa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nA  435 (873)
T KOG4194|consen  376 ELSWCIE--------------------DAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNA  435 (873)
T ss_pred             eEEEEEe--------------------cchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccc
Confidence            8865443                    23345677889999999999998555578999999999999999998888888


Q ss_pred             hcCCCCCCeEeCcC
Q 048635          516 LASLNFLSVLNLSY  529 (562)
Q Consensus       516 l~~l~~L~~L~l~~  529 (562)
                      |..+ .|++|.+..
T Consensus       436 Fe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  436 FEPM-ELKELVMNS  448 (873)
T ss_pred             cccc-hhhhhhhcc
Confidence            8887 888888764

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=5e-41  Score=308.44  Aligned_cols=432  Identities=28%  Similarity=0.347  Sum_probs=310.5

Q ss_pred             CCeEEEECCCCCCcceeecCCCCCcCcccccC--------ccccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCC
Q 048635           38 GHVIGLDLSAEPILIGRLENASGLFSLQYMQS--------QFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLS  109 (562)
Q Consensus        38 ~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~--------~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~  109 (562)
                      ..+..+++++| .+....++...+..+..|..        |++++.+..++.++.++|+++ .+|+.++.+.+|+.++++
T Consensus        45 v~l~~lils~N-~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s  122 (565)
T KOG0472|consen   45 VDLQKLILSHN-DLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS  122 (565)
T ss_pred             cchhhhhhccC-chhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence            34566777777 55444332222222222211        556666666666666666666 566666666666666666


Q ss_pred             CCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCc
Q 048635          110 SREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQF  189 (562)
Q Consensus       110 ~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~  189 (562)
                      +|.+         ...++.++.+..|+.++..+|++++.+    +++..+.+|..+++.+|++....+..+.        
T Consensus       123 ~n~~---------~el~~~i~~~~~l~dl~~~~N~i~slp----~~~~~~~~l~~l~~~~n~l~~l~~~~i~--------  181 (565)
T KOG0472|consen  123 SNEL---------KELPDSIGRLLDLEDLDATNNQISSLP----EDMVNLSKLSKLDLEGNKLKALPENHIA--------  181 (565)
T ss_pred             ccce---------eecCchHHHHhhhhhhhccccccccCc----hHHHHHHHHHHhhccccchhhCCHHHHH--------
Confidence            6653         344555666666666666666666665    3555666666667777766655544332        


Q ss_pred             ccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCC
Q 048635          190 FFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKY  269 (562)
Q Consensus       190 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~  269 (562)
                           ++.|++|+...|.+. .+|..++.+.+|..|++..|.+  ...+.|.++..|++|+++.|.+.....+....+++
T Consensus       182 -----m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki--~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~  253 (565)
T KOG0472|consen  182 -----MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKI--RFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNS  253 (565)
T ss_pred             -----HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhccc--ccCCCCCccHHHHHHHhcccHHHhhHHHHhccccc
Confidence                 567999999999888 7888899999999999999987  45669999999999999999987433344458999


Q ss_pred             CcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCc---------------------
Q 048635          270 LTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLN---------------------  328 (562)
Q Consensus       270 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~---------------------  328 (562)
                      +..|++++|+++ +.|+.+.-+.+|.+||+++|.+++.++.++.+ .|+.|.+.+|++.                     
T Consensus       254 l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~  331 (565)
T KOG0472|consen  254 LLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSK  331 (565)
T ss_pred             ceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHh
Confidence            999999999998 78888999999999999999999988888888 8999999999876                     


Q ss_pred             ---------------------------------ceEECCCCcCcccCCccccCCCC--CcCEEECcCCcccccCCccCCC
Q 048635          329 ---------------------------------GVLNLGRNNLNGTLSDIIFPRNC--GLHILDLSGNQLQGVVPKSLAN  373 (562)
Q Consensus       329 ---------------------------------~~l~l~~~~~~~~~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~l~~  373 (562)
                                                       ++++++..+++ .+|..+|..-.  -.+.++++.|++. .+|..+..
T Consensus       332 ~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~  409 (565)
T KOG0472|consen  332 IKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVE  409 (565)
T ss_pred             hccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHH
Confidence                                             23333333333 34443333221  1445555565555 44544444


Q ss_pred             CCCCCE-EEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhh
Q 048635          374 CNMLQV-LDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMR  452 (562)
Q Consensus       374 l~~L~~-L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~  452 (562)
                      ++.+.+ +.+++|.+ +.+|..+..+++|..|++++|.+.   .+|..++.+..|+.|+++.|++               
T Consensus       410 lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln---~LP~e~~~lv~Lq~LnlS~NrF---------------  470 (565)
T KOG0472|consen  410 LKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN---DLPEEMGSLVRLQTLNLSFNRF---------------  470 (565)
T ss_pred             HHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh---hcchhhhhhhhhheeccccccc---------------
Confidence            444333 33333333 446777888999999999999887   3477888888899999999987               


Q ss_pred             hhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcc
Q 048635          453 YQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL  532 (562)
Q Consensus       453 ~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l  532 (562)
                               ...|..+-.+..++.+-.++|++....|+.+.+|.+|.+|||.+|.+. .+|..++++++|++|+++||+|
T Consensus       471 ---------r~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpf  540 (565)
T KOG0472|consen  471 ---------RMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPF  540 (565)
T ss_pred             ---------ccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCcc
Confidence                     456666666677777777889998666677999999999999999999 7888999999999999999999


Q ss_pred             e
Q 048635          533 V  533 (562)
Q Consensus       533 ~  533 (562)
                      .
T Consensus       541 r  541 (565)
T KOG0472|consen  541 R  541 (565)
T ss_pred             C
Confidence            8

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=3.7e-34  Score=276.96  Aligned_cols=368  Identities=23%  Similarity=0.285  Sum_probs=236.6

Q ss_pred             CCCCCEEecCCccCc-ccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCcccc
Q 048635           76 LTNLTYLNLSHCGFT-GEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCK  154 (562)
Q Consensus        76 l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~  154 (562)
                      ++..+-+|+++|.++ +..|.....+++++.|.|....+         ..+|+.++.+.+|++|.+++|++..+.    .
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L---------~~vPeEL~~lqkLEHLs~~HN~L~~vh----G   72 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKL---------EQVPEELSRLQKLEHLSMAHNQLISVH----G   72 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhh---------hhChHHHHHHhhhhhhhhhhhhhHhhh----h
Confidence            444566677777776 34676677777777777766653         445666777777777777777776654    4


Q ss_pred             ccCCCCCCCEEecccCCCCCc-cchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCC
Q 048635          155 ALSFLPNLQVLNLSSCLLLGP-INHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLL  233 (562)
Q Consensus       155 ~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  233 (562)
                      .++.++.|+.+.+.+|++... +|..            +..+..|+.|++++|+++ ..|..+...+++-.|+|++|++.
T Consensus        73 ELs~Lp~LRsv~~R~N~LKnsGiP~d------------iF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie  139 (1255)
T KOG0444|consen   73 ELSDLPRLRSVIVRDNNLKNSGIPTD------------IFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE  139 (1255)
T ss_pred             hhccchhhHHHhhhccccccCCCCch------------hcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc
Confidence            677788888888888876442 2222            445566888899988888 77888888888888999998887


Q ss_pred             CCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCC
Q 048635          234 QGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHE  313 (562)
Q Consensus       234 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  313 (562)
                      ...-+.|..+..|-.|+|++|++. .+|+.+..+.+|++|.+++|.+...-...+..+++|+.|.+++.+-+-.      
T Consensus       140 tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~------  212 (1255)
T KOG0444|consen  140 TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLD------  212 (1255)
T ss_pred             cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhh------
Confidence            666667777888888888888887 4556677788888888888877633222344455566666666543321      


Q ss_pred             CCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchH
Q 048635          314 SRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPC  393 (562)
Q Consensus       314 ~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  393 (562)
                                                 .+|.. +..+.+|..+|++.|.+. ..|+.+..+.+|+.|+|++|+++. +..
T Consensus       213 ---------------------------N~Pts-ld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite-L~~  262 (1255)
T KOG0444|consen  213 ---------------------------NIPTS-LDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE-LNM  262 (1255)
T ss_pred             ---------------------------cCCCc-hhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceee-eec
Confidence                                       22322 334444455555555444 444555555555555555555544 222


Q ss_pred             HhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCC
Q 048635          394 WLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKS  473 (562)
Q Consensus       394 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~  473 (562)
                      ..+...+|++|+++.|+++   .+|.++..++.|+.|.+.+|++.                      ...+|..|+.+.+
T Consensus       263 ~~~~W~~lEtLNlSrNQLt---~LP~avcKL~kL~kLy~n~NkL~----------------------FeGiPSGIGKL~~  317 (1255)
T KOG0444|consen  263 TEGEWENLETLNLSRNQLT---VLPDAVCKLTKLTKLYANNNKLT----------------------FEGIPSGIGKLIQ  317 (1255)
T ss_pred             cHHHHhhhhhhccccchhc---cchHHHhhhHHHHHHHhccCccc----------------------ccCCccchhhhhh
Confidence            2333445555555555554   23455555555555555555552                      2345666777777


Q ss_pred             CCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcce
Q 048635          474 LYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV  533 (562)
Q Consensus       474 L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~  533 (562)
                      |+.+..++|.+. .+|+.++.|..|+.|.|++|++- .+|+++.-++-|+.||+..|+-.
T Consensus       318 Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  318 LEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             hHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence            777777777776 67777777777777777777776 67777777777777777777644

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.97  E-value=1.5e-35  Score=272.42  Aligned_cols=424  Identities=23%  Similarity=0.285  Sum_probs=312.2

Q ss_pred             ccccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCC
Q 048635           70 QFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLG  149 (562)
Q Consensus        70 ~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~  149 (562)
                      ..++.++..|.+|++++|+++ .+|++++.+..++.+++++|.+         ..+|..+.++.+|+.+++++|.+..++
T Consensus        61 ~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~l---------s~lp~~i~s~~~l~~l~~s~n~~~el~  130 (565)
T KOG0472|consen   61 REDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKL---------SELPEQIGSLISLVKLDCSSNELKELP  130 (565)
T ss_pred             cHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchH---------hhccHHHhhhhhhhhhhccccceeecC
Confidence            456788888999999999888 6788889999999999999874         567888889999999999999888887


Q ss_pred             CccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccC
Q 048635          150 TERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSY  229 (562)
Q Consensus       150 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~  229 (562)
                      +    .+..+..|+.++..+|++....++             +..+.++..+++.+|++.. .|...-.++.|++|+...
T Consensus       131 ~----~i~~~~~l~dl~~~~N~i~slp~~-------------~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~  192 (565)
T KOG0472|consen  131 D----SIGRLLDLEDLDATNNQISSLPED-------------MVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNS  192 (565)
T ss_pred             c----hHHHHhhhhhhhccccccccCchH-------------HHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcccch
Confidence            4    677788888889888888665433             4445568889999999984 444444589999999988


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCC
Q 048635          230 NPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIP  309 (562)
Q Consensus       230 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  309 (562)
                      |- ...-.+.++.+.+|+.|++..|++. .+| .|.++..|+++++..|.+.-...+...+++++..||+.+|++++.+.
T Consensus       193 N~-L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pd  269 (565)
T KOG0472|consen  193 NL-LETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPD  269 (565)
T ss_pred             hh-hhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCch
Confidence            85 4445567888999999999999987 445 78899999999999999984333445589999999999999998777


Q ss_pred             CCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccC----------------------
Q 048635          310 SFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVV----------------------  367 (562)
Q Consensus       310 ~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~----------------------  367 (562)
                      .+.-+.+|++||+++|.++            .+|-. ++++ .|+.|-+.||.+...-                      
T Consensus       270 e~clLrsL~rLDlSNN~is------------~Lp~s-Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~d  335 (565)
T KOG0472|consen  270 EICLLRSLERLDLSNNDIS------------SLPYS-LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDD  335 (565)
T ss_pred             HHHHhhhhhhhcccCCccc------------cCCcc-cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccC
Confidence            7788889999999999887            56655 6666 6777878777654110                      


Q ss_pred             ---------------Cc----cCCCCCCCCEEEcccCCCCCcchHHhhcCC--CCCEEEccCcccceecCCCCCCCCCCC
Q 048635          368 ---------------PK----SLANCNMLQVLDFRNNHISDNFPCWLRNAS--SLQVLVLRSNNFSGHISYPRNNVSWPL  426 (562)
Q Consensus       368 ---------------~~----~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~~~~~~~~~~  426 (562)
                                     +.    .....-+.++|++++-+++....+.|..-.  -...+++++|++...   |..+..+..
T Consensus       336 glS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~el---Pk~L~~lke  412 (565)
T KOG0472|consen  336 GLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCEL---PKRLVELKE  412 (565)
T ss_pred             CCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhh---hhhhHHHHH
Confidence                           00    011234567777777777775444444322  256777777776632   333333332


Q ss_pred             CCEE-EcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCC
Q 048635          427 LQIV-DFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSM  505 (562)
Q Consensus       427 L~~L-~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~  505 (562)
                      +.+. ++++|.+ +.+|........+.++...+++...+|..++.+..|+.|++|.|.+. ..|.++..+..++.+-.++
T Consensus       413 lvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~  490 (565)
T KOG0472|consen  413 LVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASN  490 (565)
T ss_pred             HHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcc
Confidence            2222 2222222 33332222222334444444445778888999999999999999998 8899888888899999999


Q ss_pred             CcccccChhhhcCCCCCCeEeCcCCcceecCCCCCCCCc
Q 048635          506 NNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKHVLP  544 (562)
Q Consensus       506 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~  544 (562)
                      |++....|+.+.++.+|.+||+.+|.+. .+|+....++
T Consensus       491 nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnmt  528 (565)
T KOG0472|consen  491 NQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMT  528 (565)
T ss_pred             ccccccChHHhhhhhhcceeccCCCchh-hCChhhcccc
Confidence            9999888888999999999999999998 6776655554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=5.2e-33  Score=268.99  Aligned_cols=359  Identities=24%  Similarity=0.331  Sum_probs=283.2

Q ss_pred             CCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchh
Q 048635          100 LPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHH  179 (562)
Q Consensus       100 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~  179 (562)
                      ++-.|-+|+++|.+.       +...|.....+++++.|.|...++..+|    ..++.+.+                  
T Consensus         6 LpFVrGvDfsgNDFs-------g~~FP~~v~qMt~~~WLkLnrt~L~~vP----eEL~~lqk------------------   56 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFS-------GDRFPHDVEQMTQMTWLKLNRTKLEQVP----EELSRLQK------------------   56 (1255)
T ss_pred             cceeecccccCCcCC-------CCcCchhHHHhhheeEEEechhhhhhCh----HHHHHHhh------------------
Confidence            344555666666543       2344555556666666666555555443    23444444                  


Q ss_pred             cccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCC-CCCCCCCCCEEEccCCcCCC
Q 048635          180 LANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLP-NFPKNSYLQNLNLANTSFSG  258 (562)
Q Consensus       180 ~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~L~~n~l~~  258 (562)
                                        |++|.+.+|.+. .+...+..++.|+.+.+..|++....++ .+..+..|..|+|+.|++. 
T Consensus        57 ------------------LEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-  116 (1255)
T KOG0444|consen   57 ------------------LEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-  116 (1255)
T ss_pred             ------------------hhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-
Confidence                              555555555554 3344566677788888887777666555 5666788888888888887 


Q ss_pred             CCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcC
Q 048635          259 ILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNL  338 (562)
Q Consensus       259 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~  338 (562)
                      .+|..+.+.+++-.|++++|.|....-..+.++..|-.||+++|++...+|....+..|++|++++|++.          
T Consensus       117 EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~----------  186 (1255)
T KOG0444|consen  117 EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLN----------  186 (1255)
T ss_pred             hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhh----------
Confidence            5678888888999999999999855445667888999999999999988888899999999999999876          


Q ss_pred             cccCCccccCCCCCcCEEECcCCccc-ccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCC
Q 048635          339 NGTLSDIIFPRNCGLHILDLSGNQLQ-GVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISY  417 (562)
Q Consensus       339 ~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  417 (562)
                        ...-..++.+.+|++|.+++.+-+ ..+|..+..+.+|..+|++.|.+.. .|+++..+++|+.|+|++|.++..   
T Consensus       187 --hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-vPecly~l~~LrrLNLS~N~iteL---  260 (1255)
T KOG0444|consen  187 --HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-VPECLYKLRNLRRLNLSGNKITEL---  260 (1255)
T ss_pred             --HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-chHHHhhhhhhheeccCcCceeee---
Confidence              222222667778999999997643 3588899999999999999999987 899999999999999999999854   


Q ss_pred             CCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCc-cCcChhccCCC
Q 048635          418 PRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALT-GSIPSSFGNLK  496 (562)
Q Consensus       418 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~-~~~p~~l~~l~  496 (562)
                      .-....+.+|++|++|.|++                        ...|.+++.+++|+.|.+.+|+++ .-+|..++.+.
T Consensus       261 ~~~~~~W~~lEtLNlSrNQL------------------------t~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~  316 (1255)
T KOG0444|consen  261 NMTEGEWENLETLNLSRNQL------------------------TVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI  316 (1255)
T ss_pred             eccHHHHhhhhhhccccchh------------------------ccchHHHhhhHHHHHHHhccCcccccCCccchhhhh
Confidence            45667789999999999998                        478899999999999999999987 34899999999


Q ss_pred             CCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceecCCCCCCCCccccch
Q 048635          497 QIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKHVLPNFNLH  549 (562)
Q Consensus       497 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~  549 (562)
                      +|+.+..++|++. ..|+.++.+..|+.|.|+.|++. .+|++.+.++.+++-
T Consensus       317 ~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vL  367 (1255)
T KOG0444|consen  317 QLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVL  367 (1255)
T ss_pred             hhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCccee
Confidence            9999999999998 99999999999999999999998 899999998876543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=7e-33  Score=279.89  Aligned_cols=413  Identities=27%  Similarity=0.313  Sum_probs=243.3

Q ss_pred             eEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCc
Q 048635           40 VIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSW  119 (562)
Q Consensus        40 v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  119 (562)
                      +.+||++.+ .+. ..              |..+..+.+|+.|+++.|.|. ..|.+..++.+|++++|.+|..      
T Consensus        47 L~~l~lsnn-~~~-~f--------------p~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l------  103 (1081)
T KOG0618|consen   47 LKSLDLSNN-QIS-SF--------------PIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRL------  103 (1081)
T ss_pred             eEEeecccc-ccc-cC--------------CchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchh------
Confidence            677888877 322 22              334555555666666666555 4455555666666666655542      


Q ss_pred             cccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccC-------------------CCCCccchhc
Q 048635          120 RLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSC-------------------LLLGPINHHL  180 (562)
Q Consensus       120 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n-------------------~~~~~~~~~~  180 (562)
                         ...|..+..+++|++|+++.|.+..+|.    .+..+..++.+..++|                   .+.+.++..+
T Consensus       104 ---~~lP~~~~~lknl~~LdlS~N~f~~~Pl----~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i  176 (1081)
T KOG0618|consen  104 ---QSLPASISELKNLQYLDLSFNHFGPIPL----VIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDI  176 (1081)
T ss_pred             ---hcCchhHHhhhcccccccchhccCCCch----hHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcch
Confidence               3445555566666666666665555542    2333333333333333                   3333222222


Q ss_pred             ccccC---CCC----cccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccC
Q 048635          181 ANLRS---HSQ----FFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLAN  253 (562)
Q Consensus       181 ~~l~~---~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~  253 (562)
                      ..+..   +..    ...+..+.+|+.|....|.+....    -.-++++.|+.++|.+.  ....-....+|++++++.
T Consensus       177 ~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~--~~~~~p~p~nl~~~dis~  250 (1081)
T KOG0618|consen  177 YNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLT--TLDVHPVPLNLQYLDISH  250 (1081)
T ss_pred             hhhheeeecccchhhhhhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcce--eeccccccccceeeecch
Confidence            11110   000    001222233333333333332110    11255666666666654  222222245788888888


Q ss_pred             CcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEEC
Q 048635          254 TSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNL  333 (562)
Q Consensus       254 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l  333 (562)
                      ++++. +|.|+..+.+|+.+++.+|.++ .+|..+....+|+.|.+..|.+...++.....++|++|+|..|.+.     
T Consensus       251 n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-----  323 (1081)
T KOG0618|consen  251 NNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-----  323 (1081)
T ss_pred             hhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc-----
Confidence            88884 4588888899999999998886 6777777888899999999888877776677889999999988876     


Q ss_pred             CCCcCcccCCccccCCCCC-cCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccc
Q 048635          334 GRNNLNGTLSDIIFPRNCG-LHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFS  412 (562)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~-L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  412 (562)
                             .+|..++..... +..++.+.|++.......=..++.|+.|++.+|.+++.....+.++++|+.|+|++|++.
T Consensus       324 -------~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~  396 (1081)
T KOG0618|consen  324 -------SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN  396 (1081)
T ss_pred             -------ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence                   566554444443 666777777766433222234567888899999998877777888889999999999888


Q ss_pred             eecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhc
Q 048635          413 GHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSF  492 (562)
Q Consensus       413 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l  492 (562)
                      .+.  ...+.+++.|++|++|+|++.                        .+|..+..++.|++|...+|++. ..| .+
T Consensus       397 ~fp--as~~~kle~LeeL~LSGNkL~------------------------~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~  448 (1081)
T KOG0618|consen  397 SFP--ASKLRKLEELEELNLSGNKLT------------------------TLPDTVANLGRLHTLRAHSNQLL-SFP-EL  448 (1081)
T ss_pred             cCC--HHHHhchHHhHHHhcccchhh------------------------hhhHHHHhhhhhHHHhhcCCcee-ech-hh
Confidence            666  667788888999999999883                        33444444444555555555544 344 34


Q ss_pred             cCCCCCCeeeCCCCccccc-ChhhhcCCCCCCeEeCcCCc
Q 048635          493 GNLKQIESLDLSMNNLSGK-IPAQLASLNFLSVLNLSYNN  531 (562)
Q Consensus       493 ~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~l~~n~  531 (562)
                      ..++.|+.+|+|.|+++.. +|..... ++|++||++||.
T Consensus       449 ~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  449 AQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             hhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence            4455555555555554431 2222111 445555555543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.95  E-value=6.3e-31  Score=265.86  Aligned_cols=424  Identities=25%  Similarity=0.280  Sum_probs=272.6

Q ss_pred             ccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCc
Q 048635           72 GLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTE  151 (562)
Q Consensus        72 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~  151 (562)
                      .+.+..+|+.||+++|.+. ..|..+..+.+|+.|+++.|.+         ...|....++.+|+++.|.+|.+...|  
T Consensus        40 ~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i---------~~vp~s~~~~~~l~~lnL~~n~l~~lP--  107 (1081)
T KOG0618|consen   40 FVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI---------RSVPSSCSNMRNLQYLNLKNNRLQSLP--  107 (1081)
T ss_pred             HhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH---------hhCchhhhhhhcchhheeccchhhcCc--
Confidence            3455666999999999998 7899999999999999999975         455678899999999999999999887  


Q ss_pred             cccccCCCCCCCEEecccCCCCCccchhcccccCCCC--------cccccCCCCCCEEEccCCcCcccCChhhhCCCCcc
Q 048635          152 RCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQ--------FFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLE  223 (562)
Q Consensus       152 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~--------~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  223 (562)
                        ..+..+.+|+.|++++|.+.... ..+..+.....        ...++.. .++.+++..+.+.+.++..+..+..  
T Consensus       108 --~~~~~lknl~~LdlS~N~f~~~P-l~i~~lt~~~~~~~s~N~~~~~lg~~-~ik~~~l~~n~l~~~~~~~i~~l~~--  181 (1081)
T KOG0618|consen  108 --ASISELKNLQYLDLSFNHFGPIP-LVIEVLTAEEELAASNNEKIQRLGQT-SIKKLDLRLNVLGGSFLIDIYNLTH--  181 (1081)
T ss_pred             --hhHHhhhcccccccchhccCCCc-hhHHhhhHHHHHhhhcchhhhhhccc-cchhhhhhhhhcccchhcchhhhhe--
Confidence              57899999999999999886542 22222211000        1112222 2677777777777666666655555  


Q ss_pred             EEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCc
Q 048635          224 TLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNH  303 (562)
Q Consensus       224 ~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  303 (562)
                      .|++.+|.+.   ...+..+.+|+.+....|++....    -.-++++.|+.+.|.++...+.  ....+|++++++.|.
T Consensus       182 ~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~  252 (1081)
T KOG0618|consen  182 QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNN  252 (1081)
T ss_pred             eeecccchhh---hhhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeeccc--cccccceeeecchhh
Confidence            5778777653   223333445555555555443221    1223445555555544421111  111344555555555


Q ss_pred             ccccCCCCCCCCCCCEEEcCCCCCc------------ceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccC
Q 048635          304 FSGPIPSFHESRNLNYLDLSSNNLN------------GVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSL  371 (562)
Q Consensus       304 ~~~~~~~~~~~~~L~~L~l~~n~l~------------~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l  371 (562)
                      +.+.+.....+.+|+.++..+|.++            ..+....|.+. .+|.. ..+.+.|++|++..|++....+..+
T Consensus       253 l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~-yip~~-le~~~sL~tLdL~~N~L~~lp~~~l  330 (1081)
T KOG0618|consen  253 LSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELE-YIPPF-LEGLKSLRTLDLQSNNLPSLPDNFL  330 (1081)
T ss_pred             hhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhh-hCCCc-ccccceeeeeeehhccccccchHHH
Confidence            5443333344455555555555443            01111111111 44444 4556667777777776663333222


Q ss_pred             CCCCC-CCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhh
Q 048635          372 ANCNM-LQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLG  450 (562)
Q Consensus       372 ~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  450 (562)
                      ..... |+.|+.+.|++.......=..++.|+.|.+.+|.++...  ...+..++.|+.|+|++|++. ++|        
T Consensus       331 ~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c--~p~l~~~~hLKVLhLsyNrL~-~fp--------  399 (1081)
T KOG0618|consen  331 AVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC--FPVLVNFKHLKVLHLSYNRLN-SFP--------  399 (1081)
T ss_pred             hhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc--hhhhccccceeeeeecccccc-cCC--------
Confidence            22222 555566666655422111123567888899999888654  667778899999999999882 222        


Q ss_pred             hhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCC
Q 048635          451 MRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYN  530 (562)
Q Consensus       451 l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n  530 (562)
                                    ...+.+++.|++|+||+|.++ .+|+.+..++.|++|...+|++. ..| .+..+++|+.+|++.|
T Consensus       400 --------------as~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N  462 (1081)
T KOG0618|consen  400 --------------ASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCN  462 (1081)
T ss_pred             --------------HHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccc
Confidence                          234678889999999999999 78899999999999999999999 788 7889999999999999


Q ss_pred             ccee-cCCCCC--CCCccccchHHH
Q 048635          531 NLVG-QIPTAK--HVLPNFNLHRRQ  552 (562)
Q Consensus       531 ~l~~-~~p~~~--~~~~~l~~~~~~  552 (562)
                      +++. .+|+..  ..+..|++.+|-
T Consensus       463 ~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  463 NLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hhhhhhhhhhCCCcccceeeccCCc
Confidence            9873 334432  456666666654

>PLN03210 Resistant to P

Probab=99.92  E-value=2.1e-23  Score=235.01  Aligned_cols=287  Identities=20%  Similarity=0.270  Sum_probs=153.1

Q ss_pred             CCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEcc
Q 048635          197 NLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLR  276 (562)
Q Consensus       197 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~  276 (562)
                      +|++|++.++.+. .++..+..+++|+.|+++++.. ...++.+..+++|+.|++++|.....+|..+..+++|+.|+++
T Consensus       612 ~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~-l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~  689 (1153)
T PLN03210        612 NLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKN-LKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS  689 (1153)
T ss_pred             CCcEEECcCcccc-ccccccccCCCCCEEECCCCCC-cCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence            3444444444443 2333334444455555544321 1223334444555555555554434445555555555555555


Q ss_pred             CCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEE
Q 048635          277 SCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHIL  356 (562)
Q Consensus       277 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L  356 (562)
                      +|...+.+|..+ ++++|+.|++++|......|..  ..+|+.|++++|.+.            .+|.. + .+++|+.|
T Consensus       690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~------------~lP~~-~-~l~~L~~L  752 (1153)
T PLN03210        690 RCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE------------EFPSN-L-RLENLDEL  752 (1153)
T ss_pred             CCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCccc------------ccccc-c-cccccccc
Confidence            544333444333 4555555555555433222221  234555555555543            33332 1 23445555


Q ss_pred             ECcCCccc-------ccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCE
Q 048635          357 DLSGNQLQ-------GVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQI  429 (562)
Q Consensus       357 ~L~~n~l~-------~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~  429 (562)
                      .+.++...       ...+......++|+.|++++|.....+|..++++++|+.|++++|......  |... .+++|+.
T Consensus       753 ~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L--P~~~-~L~sL~~  829 (1153)
T PLN03210        753 ILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL--PTGI-NLESLES  829 (1153)
T ss_pred             cccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee--CCCC-CccccCE
Confidence            55443211       011111223456777777777666666777777777777777776533222  3333 5677777


Q ss_pred             EEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCccc
Q 048635          430 VDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS  509 (562)
Q Consensus       430 L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~  509 (562)
                      |++++|.....+                       |.   ..++|+.|+|++|.++ .+|.++..+++|+.|++++|+--
T Consensus       830 L~Ls~c~~L~~~-----------------------p~---~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L  882 (1153)
T PLN03210        830 LDLSGCSRLRTF-----------------------PD---ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNL  882 (1153)
T ss_pred             EECCCCCccccc-----------------------cc---cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCc
Confidence            777776542221                       11   1246777888888777 66777777888888888775443


Q ss_pred             ccChhhhcCCCCCCeEeCcCCcc
Q 048635          510 GKIPAQLASLNFLSVLNLSYNNL  532 (562)
Q Consensus       510 ~~~p~~l~~l~~L~~L~l~~n~l  532 (562)
                      ..+|..+..+++|+.+++++|.-
T Consensus       883 ~~l~~~~~~L~~L~~L~l~~C~~  905 (1153)
T PLN03210        883 QRVSLNISKLKHLETVDFSDCGA  905 (1153)
T ss_pred             CccCcccccccCCCeeecCCCcc
Confidence            35666677777788888877753

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.91  E-value=8e-23  Score=230.36  Aligned_cols=199  Identities=23%  Similarity=0.263  Sum_probs=119.7

Q ss_pred             ccccCCCCCCCEEecCCcc------CcccCCccCCCCC-CCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccC
Q 048635           70 QFGLANLTNLTYLNLSHCG------FTGEIPTEISSLP-RLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDN  142 (562)
Q Consensus        70 ~~~l~~l~~L~~L~Ls~n~------i~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  142 (562)
                      ...|.++++|+.|.+..+.      +...+|..|..++ +|+.|++.++.+         ...|..| ...+|++|++.+
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l---------~~lP~~f-~~~~L~~L~L~~  620 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL---------RCMPSNF-RPENLVKLQMQG  620 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC---------CCCCCcC-CccCCcEEECcC
Confidence            3457778888888776543      2234566666654 588888877763         3334444 457778888888


Q ss_pred             ccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCc
Q 048635          143 VDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTL  222 (562)
Q Consensus       143 ~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L  222 (562)
                      +++..++    ..+..+++|+.|+++++......|.             ++.+++|++|++++|.....+|..+..+++|
T Consensus       621 s~l~~L~----~~~~~l~~Lk~L~Ls~~~~l~~ip~-------------ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L  683 (1153)
T PLN03210        621 SKLEKLW----DGVHSLTGLRNIDLRGSKNLKEIPD-------------LSMATNLETLKLSDCSSLVELPSSIQYLNKL  683 (1153)
T ss_pred             ccccccc----cccccCCCCCEEECCCCCCcCcCCc-------------cccCCcccEEEecCCCCccccchhhhccCCC
Confidence            7776654    3456777788888877654333321             4456677777777776555677777777777


Q ss_pred             cEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcC
Q 048635          223 ETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSS  301 (562)
Q Consensus       223 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  301 (562)
                      +.|++++|... ..++....+++|+.|++++|.....+|..   .++|++|++++|.+. .+|..+ .+++|++|.+.+
T Consensus       684 ~~L~L~~c~~L-~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~  756 (1153)
T PLN03210        684 EDLDMSRCENL-EILPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCE  756 (1153)
T ss_pred             CEEeCCCCCCc-CccCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccc
Confidence            77777776422 22332224566667777666544333322   345666666666654 344332 345555555554

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=3.2e-24  Score=197.81  Aligned_cols=265  Identities=19%  Similarity=0.165  Sum_probs=188.1

Q ss_pred             CCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccC-CCCCCCCCCC
Q 048635          161 NLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSY-NPLLQGSLPN  239 (562)
Q Consensus       161 ~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~-~~~~~~~~~~  239 (562)
                      .-..+.|..|.|+...+..|..            +++|+.|+|+.|.|+.+.|++|.++..+.+|-+-+ |.|....-..
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~------------l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~  135 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKT------------LHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA  135 (498)
T ss_pred             cceEEEeccCCcccCChhhccc------------hhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence            5566777777777766555443            44577888888877777777777777766655544 6666666667


Q ss_pred             CCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCccccc------------
Q 048635          240 FPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGP------------  307 (562)
Q Consensus       240 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~------------  307 (562)
                      |.++..++.|.+.-|++.-...+.+..++++..|.+.+|.+.......+..+..++.+.+..|.+...            
T Consensus       136 F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~  215 (498)
T KOG4237|consen  136 FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAM  215 (498)
T ss_pred             hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhh
Confidence            77777777777777777766666777777777777777777644444666777777777766652210            


Q ss_pred             -CCCCCCCCCCCEEEcCCCCCc-----------ceE--EC-CCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCC
Q 048635          308 -IPSFHESRNLNYLDLSSNNLN-----------GVL--NL-GRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLA  372 (562)
Q Consensus       308 -~~~~~~~~~L~~L~l~~n~l~-----------~~l--~l-~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  372 (562)
                       +..+++.....-..+.+.++.           +.+  .+ +.....+..|...|.++++|++|++++|+++++-+.+|.
T Consensus       216 ~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe  295 (498)
T KOG4237|consen  216 NPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE  295 (498)
T ss_pred             chhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhc
Confidence             001122222221222221111           000  11 122234567887899999999999999999999999999


Q ss_pred             CCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCC
Q 048635          373 NCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGG  439 (562)
Q Consensus       373 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~  439 (562)
                      +...+++|.|..|++.......|.++..|+.|+|.+|+++...  +.++.....|.+|.+-.|++--
T Consensus       296 ~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~--~~aF~~~~~l~~l~l~~Np~~C  360 (498)
T KOG4237|consen  296 GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVA--PGAFQTLFSLSTLNLLSNPFNC  360 (498)
T ss_pred             chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEe--cccccccceeeeeehccCcccC
Confidence            9999999999999998877778999999999999999999877  8889999999999999888743

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=2.4e-20  Score=195.50  Aligned_cols=261  Identities=24%  Similarity=0.271  Sum_probs=139.0

Q ss_pred             CCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccC
Q 048635          198 LTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRS  277 (562)
Q Consensus       198 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~  277 (562)
                      -..|+++++.++ .+|..+.  ++|+.|++.+|.+..  ++..  .++|++|++++|+++. +|.   ..++|+.|++++
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~--LP~l--p~~Lk~LdLs~N~Lts-LP~---lp~sL~~L~Ls~  271 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS--LPAL--PPELRTLEVSGNQLTS-LPV---LPPGLLELSIFS  271 (788)
T ss_pred             CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC--CCCC--CCCCcEEEecCCccCc-ccC---cccccceeeccC
Confidence            445666666665 4454443  356666666665432  2221  3556666666666653 232   134566666666


Q ss_pred             CcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEE
Q 048635          278 CSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILD  357 (562)
Q Consensus       278 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~  357 (562)
                      |.++ .+|..   ..+|+.|++++|.++..+.   ..++|+.|++++|.++            .+|..    ...|+.|+
T Consensus       272 N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~------------~Lp~l----p~~L~~L~  328 (788)
T PRK15387        272 NPLT-HLPAL---PSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLA------------SLPAL----PSELCKLW  328 (788)
T ss_pred             Cchh-hhhhc---hhhcCEEECcCCccccccc---cccccceeECCCCccc------------cCCCC----cccccccc
Confidence            6665 23321   2456666666666654322   2345666666666554            23221    12355666


Q ss_pred             CcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcC
Q 048635          358 LSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKF  437 (562)
Q Consensus       358 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~  437 (562)
                      +++|.+++ +|..   ..+|+.|+|++|++++ +|..   .++|+.|++++|.+...   +..   ..+|+.|++++|++
T Consensus       329 Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~L---P~l---~~~L~~LdLs~N~L  394 (788)
T PRK15387        329 AYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSL---PAL---PSGLKELIVSGNRL  394 (788)
T ss_pred             cccCcccc-cccc---ccccceEecCCCccCC-CCCC---CcccceehhhccccccC---ccc---ccccceEEecCCcc
Confidence            66666653 3321   2356666666666665 2321   24566666666666532   221   23566666666665


Q ss_pred             CCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhc
Q 048635          438 GGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLA  517 (562)
Q Consensus       438 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~  517 (562)
                      ++                        +|..   .++|+.|++++|.++ .+|..   ..+|+.|++++|+++ .+|..+.
T Consensus       395 t~------------------------LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~  442 (788)
T PRK15387        395 TS------------------------LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLI  442 (788)
T ss_pred             cC------------------------CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHh
Confidence            31                        1111   135666666666666 34432   234566666666666 5666666


Q ss_pred             CCCCCCeEeCcCCcceecCCC
Q 048635          518 SLNFLSVLNLSYNNLVGQIPT  538 (562)
Q Consensus       518 ~l~~L~~L~l~~n~l~~~~p~  538 (562)
                      .+++|+.|++++|++++..|.
T Consensus       443 ~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        443 HLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             hccCCCeEECCCCCCCchHHH
Confidence            666666666666666665544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.84  E-value=3e-23  Score=191.45  Aligned_cols=394  Identities=22%  Similarity=0.240  Sum_probs=232.2

Q ss_pred             CCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccC-ccCCCCCCccccccC
Q 048635           79 LTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDN-VDLSGLGTERCKALS  157 (562)
Q Consensus        79 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~~~~~~l~  157 (562)
                      -..++|..|+|+...|.+|..+++||.|||++|++        ....|++|.++++|..|-+.+ |+|++++.   ..+.
T Consensus        69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~I--------s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k---~~F~  137 (498)
T KOG4237|consen   69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNI--------SFIAPDAFKGLASLLSLVLYGNNKITDLPK---GAFG  137 (498)
T ss_pred             ceEEEeccCCcccCChhhccchhhhceecccccch--------hhcChHhhhhhHhhhHHHhhcCCchhhhhh---hHhh
Confidence            45688888999877888889999999999998884        466788888888887777776 88888876   5677


Q ss_pred             CCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCC-CC
Q 048635          158 FLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQ-GS  236 (562)
Q Consensus       158 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~  236 (562)
                      ++..|+.|.+..|++.-...+.|..            ++++..|.+..|.+....-..|..+..++.+.+..|++.. ..
T Consensus       138 gL~slqrLllNan~i~Cir~~al~d------------L~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn  205 (498)
T KOG4237|consen  138 GLSSLQRLLLNANHINCIRQDALRD------------LPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN  205 (498)
T ss_pred             hHHHHHHHhcChhhhcchhHHHHHH------------hhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence            7888888888888877766555544            4457777888887774444467777777777777765311 11


Q ss_pred             CCC-----------CCCCCCCCEEEccCCcCCCCCCCCCcCC-CCCcEEEccCCcccccCC-ccCCCCCCCCeeeCcCCc
Q 048635          237 LPN-----------FPKNSYLQNLNLANTSFSGILPDPIGIL-KYLTRVDLRSCSFTGPIP-TSTTNLTQLFHVDFSSNH  303 (562)
Q Consensus       237 ~~~-----------~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~  303 (562)
                      .+.           +++..-.....+.+.++..+-+..+... ..+..--.+.+...+..| ..|..+++|++|++++|+
T Consensus       206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~  285 (498)
T KOG4237|consen  206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK  285 (498)
T ss_pred             cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence            111           1111111111222222221111111110 011111111122222222 235667777777777777


Q ss_pred             ccccC-CCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEc
Q 048635          304 FSGPI-PSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDF  382 (562)
Q Consensus       304 ~~~~~-~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  382 (562)
                      ++... ..|.+...+++|.|..|++.            .+...+|.++..|+.|+|++|+|+.+.|.+|..+.+|.+|++
T Consensus       286 i~~i~~~aFe~~a~l~eL~L~~N~l~------------~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l  353 (498)
T KOG4237|consen  286 ITRIEDGAFEGAAELQELYLTRNKLE------------FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNL  353 (498)
T ss_pred             cchhhhhhhcchhhhhhhhcCcchHH------------HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeeh
Confidence            76643 34566677777777777665            555556777777777777777777777777777777777777


Q ss_pred             ccCCCCC-----cchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcC---------------CCcCC
Q 048635          383 RNNHISD-----NFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKF---------------GGRLS  442 (562)
Q Consensus       383 ~~n~l~~-----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~---------------~~~~~  442 (562)
                      -.|.+.-     -..+|+..-.      ..++         .--.....++.+++++..+               ++..|
T Consensus       354 ~~Np~~CnC~l~wl~~Wlr~~~------~~~~---------~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP  418 (498)
T KOG4237|consen  354 LSNPFNCNCRLAWLGEWLRKKS------VVGN---------PRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCP  418 (498)
T ss_pred             ccCcccCccchHHHHHHHhhCC------CCCC---------CCCCCCchhccccchhccccccccCCccccCCCCCCCCC
Confidence            6665532     1122322100      0000         0001112233333333222               11222


Q ss_pred             hhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCC
Q 048635          443 QKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFL  522 (562)
Q Consensus       443 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  522 (562)
                      +.+...-..  ..-.+.....+|+.+.  ....+|.+.+|.++ .+|..  .+..| .+|+++|+++...-..|.++++|
T Consensus       419 ~~c~c~~tV--vRcSnk~lk~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql  490 (498)
T KOG4237|consen  419 PPCTCLDTV--VRCSNKLLKLLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQL  490 (498)
T ss_pred             CCcchhhhh--HhhcccchhhcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhh
Confidence            222111100  0001112233444443  34678999999999 77876  67888 99999999996666778999999


Q ss_pred             CeEeCcCC
Q 048635          523 SVLNLSYN  530 (562)
Q Consensus       523 ~~L~l~~n  530 (562)
                      .+|-|++|
T Consensus       491 ~tlilsyn  498 (498)
T KOG4237|consen  491 STLILSYN  498 (498)
T ss_pred             heeEEecC
Confidence            99999886

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=7.6e-20  Score=191.73  Aligned_cols=266  Identities=24%  Similarity=0.269  Sum_probs=178.9

Q ss_pred             CCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCC
Q 048635          161 NLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNF  240 (562)
Q Consensus       161 ~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~  240 (562)
                      +-..|+++++.++. +|..+.              .+|+.|++.+|.++ .+|.   .+++|++|++++|.+...  +.+
T Consensus       202 ~~~~LdLs~~~Lts-LP~~l~--------------~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~LtsL--P~l  260 (788)
T PRK15387        202 GNAVLNVGESGLTT-LPDCLP--------------AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSL--PVL  260 (788)
T ss_pred             CCcEEEcCCCCCCc-CCcchh--------------cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCcc--cCc
Confidence            45566666666653 332221              24677777777766 3443   246777777777766432  222


Q ss_pred             CCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEE
Q 048635          241 PKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYL  320 (562)
Q Consensus       241 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L  320 (562)
                        .++|+.|++++|.++. +|..   .+.|+.|++++|+++ .+|.   ..++|+.|++++|.+.+... +  ..+|+.|
T Consensus       261 --p~sL~~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~Lp~-l--p~~L~~L  327 (788)
T PRK15387        261 --PPGLLELSIFSNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLASLPA-L--PSELCKL  327 (788)
T ss_pred             --ccccceeeccCCchhh-hhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCccccCCC-C--ccccccc
Confidence              3567777777777763 3332   245777888888777 3443   23678888888888775432 1  2457777


Q ss_pred             EcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCC
Q 048635          321 DLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASS  400 (562)
Q Consensus       321 ~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  400 (562)
                      ++++|.++            .+|..    ..+|+.|++++|++++ +|..   ..+|+.|++++|++.. +|..   .++
T Consensus       328 ~Ls~N~L~------------~LP~l----p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~  383 (788)
T PRK15387        328 WAYNNQLT------------SLPTL----PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSG  383 (788)
T ss_pred             ccccCccc------------ccccc----ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccc
Confidence            77777765            44431    1368889999888884 4442   3568888899998886 4543   357


Q ss_pred             CCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCc
Q 048635          401 LQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMS  480 (562)
Q Consensus       401 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls  480 (562)
                      |+.|++++|.+....   ..   .++|+.|++++|++++                        +|..   ..+|+.|+++
T Consensus       384 L~~LdLs~N~Lt~LP---~l---~s~L~~LdLS~N~Lss------------------------IP~l---~~~L~~L~Ls  430 (788)
T PRK15387        384 LKELIVSGNRLTSLP---VL---PSELKELMVSGNRLTS------------------------LPML---PSGLLSLSVY  430 (788)
T ss_pred             cceEEecCCcccCCC---Cc---ccCCCEEEccCCcCCC------------------------CCcc---hhhhhhhhhc
Confidence            899999999887533   22   3678999999999842                        2321   2467889999


Q ss_pred             CCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcC
Q 048635          481 HNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLAS  518 (562)
Q Consensus       481 ~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  518 (562)
                      +|+++ .+|..+..+++|+.|+|++|++++..|..+..
T Consensus       431 ~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        431 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             cCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence            99999 78999999999999999999999888877643

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.75  E-value=7.5e-18  Score=178.00  Aligned_cols=247  Identities=24%  Similarity=0.357  Sum_probs=149.3

Q ss_pred             CCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEc
Q 048635          196 LNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDL  275 (562)
Q Consensus       196 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l  275 (562)
                      .+...|+++++.++ .+|..+.  +.|+.|++++|.+..... .+  .++|+.|++++|.++. +|..+  .++|+.|++
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~LtsLP~-~l--~~nL~~L~Ls~N~Lts-LP~~l--~~~L~~L~L  248 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELKSLPE-NL--QGNIKTLYANSNQLTS-IPATL--PDTIQEMEL  248 (754)
T ss_pred             cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCcCCh-hh--ccCCCEEECCCCcccc-CChhh--hccccEEEC
Confidence            35678888888777 4565442  468888888887653322 11  2478888888887773 44433  246788888


Q ss_pred             cCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCE
Q 048635          276 RSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHI  355 (562)
Q Consensus       276 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~  355 (562)
                      ++|.+. .+|..+.  .+|+.|++++|.+...+..+  .++|+.|++++|.++            .+|.. +.  ++|+.
T Consensus       249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l--~~sL~~L~Ls~N~Lt------------~LP~~-lp--~sL~~  308 (754)
T PRK15370        249 SINRIT-ELPERLP--SALQSLDLFHNKISCLPENL--PEELRYLSVYDNSIR------------TLPAH-LP--SGITH  308 (754)
T ss_pred             cCCccC-cCChhHh--CCCCEEECcCCccCcccccc--CCCCcEEECCCCccc------------cCccc-ch--hhHHH
Confidence            888777 4555443  46777888777776543322  246777777777665            33332 11  24677


Q ss_pred             EECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCC
Q 048635          356 LDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASN  435 (562)
Q Consensus       356 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n  435 (562)
                      |++++|.++. +|..+  .++|+.|++++|.++. +|..+  .++|+.|++++|++...   |..+  .++|+.|++++|
T Consensus       309 L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~L---P~~l--p~~L~~LdLs~N  377 (754)
T PRK15370        309 LNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITVL---PETL--PPTITTLDVSRN  377 (754)
T ss_pred             HHhcCCcccc-CCccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCCcC---Chhh--cCCcCEEECCCC
Confidence            7777777763 34333  2567777777777766 44443  25777777777776532   3322  256777777777


Q ss_pred             cCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhc----cCCCCCCeeeCCCCccc
Q 048635          436 KFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSF----GNLKQIESLDLSMNNLS  509 (562)
Q Consensus       436 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l----~~l~~L~~L~Ls~n~l~  509 (562)
                      +++ .                       +|+.+.  +.|+.|++++|++. .+|..+    ..++.+..|++.+|.++
T Consensus       378 ~Lt-~-----------------------LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        378 ALT-N-----------------------LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             cCC-C-----------------------CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            663 1                       222222  24666777777776 444433    33466677777777766

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.75  E-value=4.7e-18  Score=179.55  Aligned_cols=251  Identities=23%  Similarity=0.285  Sum_probs=141.8

Q ss_pred             CCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCC
Q 048635          160 PNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN  239 (562)
Q Consensus       160 ~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~  239 (562)
                      .+...|+++++.++.. |..+              .+.++.|++++|.++ .+|..+.  ++|+.|++++|.+..... .
T Consensus       178 ~~~~~L~L~~~~LtsL-P~~I--------------p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsLP~-~  238 (754)
T PRK15370        178 NNKTELRLKILGLTTI-PACI--------------PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTSIPA-T  238 (754)
T ss_pred             cCceEEEeCCCCcCcC-Cccc--------------ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccccCCh-h
Confidence            3456677766665542 2211              134777777777776 4454442  467777777776532211 1


Q ss_pred             CCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCE
Q 048635          240 FPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNY  319 (562)
Q Consensus       240 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~  319 (562)
                      +  ..+|+.|++++|.+. .+|..+.  .+|+.|++++|.++ .+|..+.  ++|+.|++++|.+++.+..+  .++|+.
T Consensus       239 l--~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l--p~sL~~  308 (754)
T PRK15370        239 L--PDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHL--PSGITH  308 (754)
T ss_pred             h--hccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcccc--hhhHHH
Confidence            1  235777777777766 3444332  45777777777776 3454443  46777777777766533222  235666


Q ss_pred             EEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCC
Q 048635          320 LDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNAS  399 (562)
Q Consensus       320 L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~  399 (562)
                      |++++|.++            .+|....   ++|+.|++++|.+++ +|..+  .++|+.|++++|++.. +|..+  .+
T Consensus       309 L~Ls~N~Lt------------~LP~~l~---~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~-LP~~l--p~  367 (754)
T PRK15370        309 LNVQSNSLT------------ALPETLP---PGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITV-LPETL--PP  367 (754)
T ss_pred             HHhcCCccc------------cCCcccc---ccceeccccCCcccc-CChhh--cCcccEEECCCCCCCc-CChhh--cC
Confidence            666666655            3343211   356777777777664 44444  2567777777777764 44443  25


Q ss_pred             CCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeC
Q 048635          400 SLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNM  479 (562)
Q Consensus       400 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L  479 (562)
                      +|++|++++|.+...   |..+.  ..|+.|++++|++. .+|..                   ++.....++.+..|++
T Consensus       368 ~L~~LdLs~N~Lt~L---P~~l~--~sL~~LdLs~N~L~-~LP~s-------------------l~~~~~~~~~l~~L~L  422 (754)
T PRK15370        368 TITTLDVSRNALTNL---PENLP--AALQIMQASRNNLV-RLPES-------------------LPHFRGEGPQPTRIIV  422 (754)
T ss_pred             CcCEEECCCCcCCCC---CHhHH--HHHHHHhhccCCcc-cCchh-------------------HHHHhhcCCCccEEEe
Confidence            677777777776632   33222  35677777777764 22221                   2222334466677777


Q ss_pred             cCCcCc
Q 048635          480 SHNALT  485 (562)
Q Consensus       480 s~n~i~  485 (562)
                      .+|.++
T Consensus       423 ~~Npls  428 (754)
T PRK15370        423 EYNPFS  428 (754)
T ss_pred             eCCCcc
Confidence            777766

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=4.1e-19  Score=174.59  Aligned_cols=163  Identities=23%  Similarity=0.297  Sum_probs=102.6

Q ss_pred             CCcCEEECcCCccccc----CCccCCCCCCCCEEEcccCCCCCc----chHHhhcCCCCCEEEccCcccceec--CCCCC
Q 048635          351 CGLHILDLSGNQLQGV----VPKSLANCNMLQVLDFRNNHISDN----FPCWLRNASSLQVLVLRSNNFSGHI--SYPRN  420 (562)
Q Consensus       351 ~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~  420 (562)
                      ++|+.|++++|.+++.    ++..+..+++|++|++++|.+.+.    ++..+..+++|++|++++|.+.+..  .+...
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  216 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET  216 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence            4566666666665521    233455566777777777777642    2233445567888888777765321  12334


Q ss_pred             CCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccc-cCcCCCCEEeCcCCcCcc----CcChhccCC
Q 048635          421 NVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEM-GRFKSLYALNMSHNALTG----SIPSSFGNL  495 (562)
Q Consensus       421 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l-~~l~~L~~L~Ls~n~i~~----~~p~~l~~l  495 (562)
                      +..+++|++|++++|++++.....+.                   ..+ ...+.|++|++++|.+++    .++..+..+
T Consensus       217 ~~~~~~L~~L~ls~n~l~~~~~~~l~-------------------~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~  277 (319)
T cd00116         217 LASLKSLEVLNLGDNNLTDAGAAALA-------------------SALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEK  277 (319)
T ss_pred             hcccCCCCEEecCCCcCchHHHHHHH-------------------HHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcC
Confidence            55667888888888877542211110                   001 124688999999998863    234556677


Q ss_pred             CCCCeeeCCCCccccc----ChhhhcCC-CCCCeEeCcCCcc
Q 048635          496 KQIESLDLSMNNLSGK----IPAQLASL-NFLSVLNLSYNNL  532 (562)
Q Consensus       496 ~~L~~L~Ls~n~l~~~----~p~~l~~l-~~L~~L~l~~n~l  532 (562)
                      ++|+.+++++|.++..    ....+... +.|+++++.+|++
T Consensus       278 ~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         278 ESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             CCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            8899999999999854    44455555 7899999988874

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.69  E-value=1.8e-18  Score=170.07  Aligned_cols=239  Identities=21%  Similarity=0.240  Sum_probs=155.4

Q ss_pred             CCCCCcEEEccCCccccc----CCccCCCCCCCCeeeCcCCcccc-------cCCCCCCCCCCCEEEcCCCCCcceEECC
Q 048635          266 ILKYLTRVDLRSCSFTGP----IPTSTTNLTQLFHVDFSSNHFSG-------PIPSFHESRNLNYLDLSSNNLNGVLNLG  334 (562)
Q Consensus       266 ~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~-------~~~~~~~~~~L~~L~l~~n~l~~~l~l~  334 (562)
                      .++.|+.++++++.+++.    ++..+...+.+++++++++.+.+       ....+..+++|+.|++++|.+..     
T Consensus        21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----   95 (319)
T cd00116          21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP-----   95 (319)
T ss_pred             HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh-----
Confidence            334455555555554321    22233344455555555554431       01123446677777777776541     


Q ss_pred             CCcCcccCCccccCCC---CCcCEEECcCCcccc----cCCccCCCC-CCCCEEEcccCCCCCc----chHHhhcCCCCC
Q 048635          335 RNNLNGTLSDIIFPRN---CGLHILDLSGNQLQG----VVPKSLANC-NMLQVLDFRNNHISDN----FPCWLRNASSLQ  402 (562)
Q Consensus       335 ~~~~~~~~~~~~~~~~---~~L~~L~L~~n~l~~----~~~~~l~~l-~~L~~L~L~~n~l~~~----~~~~l~~l~~L~  402 (562)
                            ..+.. +..+   ++|++|++++|.+.+    .+...+..+ ++|++|++++|.+++.    .+..+..+++|+
T Consensus        96 ------~~~~~-~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~  168 (319)
T cd00116          96 ------DGCGV-LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLK  168 (319)
T ss_pred             ------hHHHH-HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcC
Confidence                  11111 2222   458899999888763    233345566 8999999999999842    344567788999


Q ss_pred             EEEccCcccceec--CCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCc
Q 048635          403 VLVLRSNNFSGHI--SYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMS  480 (562)
Q Consensus       403 ~L~l~~n~l~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls  480 (562)
                      +|++++|.+.+..  .++..+..+++|++|++++|.+.+...                   +.+...+..+++|++|+++
T Consensus       169 ~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-------------------~~l~~~~~~~~~L~~L~ls  229 (319)
T cd00116         169 ELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA-------------------SALAETLASLKSLEVLNLG  229 (319)
T ss_pred             EEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH-------------------HHHHHHhcccCCCCEEecC
Confidence            9999999987421  113344556799999999999853321                   2234456778999999999


Q ss_pred             CCcCccCcChhccC-----CCCCCeeeCCCCcccc----cChhhhcCCCCCCeEeCcCCcceec
Q 048635          481 HNALTGSIPSSFGN-----LKQIESLDLSMNNLSG----KIPAQLASLNFLSVLNLSYNNLVGQ  535 (562)
Q Consensus       481 ~n~i~~~~p~~l~~-----l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~l~~n~l~~~  535 (562)
                      +|.+++..+..+..     .+.|++|++++|.+++    .++..+..+++|+++++++|.+...
T Consensus       230 ~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         230 DNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             CCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            99998644433332     4799999999999973    3455677789999999999999844

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.68  E-value=7.8e-19  Score=144.00  Aligned_cols=161  Identities=27%  Similarity=0.448  Sum_probs=128.4

Q ss_pred             CCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCC
Q 048635          349 RNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQ  428 (562)
Q Consensus       349 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~  428 (562)
                      .+..++.|.+++|+++ .+|..+..+.+|+.|++.+|++.+ .|..++.++.|+.|+++-|++.   .+|..++.+|.|+
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~---~lprgfgs~p~le  105 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN---ILPRGFGSFPALE  105 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh---cCccccCCCchhh
Confidence            3456777888888888 556668888889999999998877 6777888899999999888876   3478888999999


Q ss_pred             EEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcc
Q 048635          429 IVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNL  508 (562)
Q Consensus       429 ~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l  508 (562)
                      .||+++|++..                      ...|..|..++.|+.|.+++|.+. .+|..++++++||.|.+..|.+
T Consensus       106 vldltynnl~e----------------------~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndl  162 (264)
T KOG0617|consen  106 VLDLTYNNLNE----------------------NSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDL  162 (264)
T ss_pred             hhhcccccccc----------------------ccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCch
Confidence            99999988852                      345666777788888888888888 7777888888888888888888


Q ss_pred             cccChhhhcCCCCCCeEeCcCCcceecCCC
Q 048635          509 SGKIPAQLASLNFLSVLNLSYNNLVGQIPT  538 (562)
Q Consensus       509 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~  538 (562)
                      - .+|..++.+++|++|++.+|+++-..|+
T Consensus       163 l-~lpkeig~lt~lrelhiqgnrl~vlppe  191 (264)
T KOG0617|consen  163 L-SLPKEIGDLTRLRELHIQGNRLTVLPPE  191 (264)
T ss_pred             h-hCcHHHHHHHHHHHHhcccceeeecChh
Confidence            7 6888888888888888888888844443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.62  E-value=6.6e-18  Score=138.62  Aligned_cols=185  Identities=27%  Similarity=0.434  Sum_probs=141.1

Q ss_pred             CCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcc
Q 048635          312 HESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNF  391 (562)
Q Consensus       312 ~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  391 (562)
                      ..+..++.|.+++|+++            .+|.. +..+.+|+.|++++|+++ ..|..++.+++|+.|++.-|++.. .
T Consensus        30 f~~s~ITrLtLSHNKl~------------~vppn-ia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~-l   94 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLT------------VVPPN-IAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNI-L   94 (264)
T ss_pred             cchhhhhhhhcccCcee------------ecCCc-HHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhc-C
Confidence            34455566666666665            55555 566667788888888887 577778888888888888888765 6


Q ss_pred             hHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCc
Q 048635          392 PCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRF  471 (562)
Q Consensus       392 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l  471 (562)
                      |..|+.+|.|+.|+++.|++... .+|..+..++.|+.|.+++|.+                        ..+|+.++.+
T Consensus        95 prgfgs~p~levldltynnl~e~-~lpgnff~m~tlralyl~dndf------------------------e~lp~dvg~l  149 (264)
T KOG0617|consen   95 PRGFGSFPALEVLDLTYNNLNEN-SLPGNFFYMTTLRALYLGDNDF------------------------EILPPDVGKL  149 (264)
T ss_pred             ccccCCCchhhhhhccccccccc-cCCcchhHHHHHHHHHhcCCCc------------------------ccCChhhhhh
Confidence            88888888888888888887643 3578888888888888888887                        5678889999


Q ss_pred             CCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCC---CCCeEeCcCCcceecCCC
Q 048635          472 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLN---FLSVLNLSYNNLVGQIPT  538 (562)
Q Consensus       472 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~---~L~~L~l~~n~l~~~~p~  538 (562)
                      ++|+.|.+..|.+. .+|..++.++.|++|++.+|+++ .+|..++.+.   +=+.+.+.+|+....|.+
T Consensus       150 t~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIae  217 (264)
T KOG0617|consen  150 TNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAE  217 (264)
T ss_pred             cceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence            99999999999988 78999999999999999999999 6666666543   224555667776555543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.25  E-value=2e-13  Score=132.79  Aligned_cols=159  Identities=27%  Similarity=0.418  Sum_probs=105.9

Q ss_pred             cCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCC
Q 048635          341 TLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRN  420 (562)
Q Consensus       341 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~  420 (562)
                      .+|.. +..+..|+.+.++.|.+. .+|..+.++..|+.+||+.|++.- .|..+..+| |+.|.+++|+++.   +|+.
T Consensus        89 elp~~-~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~-lp~~lC~lp-Lkvli~sNNkl~~---lp~~  161 (722)
T KOG0532|consen   89 ELPEE-ACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSH-LPDGLCDLP-LKVLIVSNNKLTS---LPEE  161 (722)
T ss_pred             cCchH-HHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhc-CChhhhcCc-ceeEEEecCcccc---CCcc
Confidence            66655 555566777788888777 677788888888888888888876 555566554 8888888888873   4666


Q ss_pred             CCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCe
Q 048635          421 NVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIES  500 (562)
Q Consensus       421 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~  500 (562)
                      ++..+.|..||.+.|.+                        ..+|..++.+.+|+.|++.+|.+. .+|+.+. .=.|..
T Consensus       162 ig~~~tl~~ld~s~nei------------------------~slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~  215 (722)
T KOG0532|consen  162 IGLLPTLAHLDVSKNEI------------------------QSLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIR  215 (722)
T ss_pred             cccchhHHHhhhhhhhh------------------------hhchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceee
Confidence            77778888888888887                        234455555556666666666655 3444444 233555


Q ss_pred             eeCCCCcccccChhhhcCCCCCCeEeCcCCcce
Q 048635          501 LDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV  533 (562)
Q Consensus       501 L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~  533 (562)
                      ||+|.|+++ .+|..|.+++.|++|-|.+|++.
T Consensus       216 lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  216 LDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             eecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence            666666665 55555666666666666666555

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.23  E-value=5.8e-13  Score=122.35  Aligned_cols=90  Identities=20%  Similarity=0.285  Sum_probs=52.1

Q ss_pred             CCCCcCEEECcCCcccccC----CccCCCCCCCCEEEcccCCCCCc----chHHhhcCCCCCEEEccCcccceec--CCC
Q 048635          349 RNCGLHILDLSGNQLQGVV----PKSLANCNMLQVLDFRNNHISDN----FPCWLRNASSLQVLVLRSNNFSGHI--SYP  418 (562)
Q Consensus       349 ~~~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~--~~~  418 (562)
                      .-+.|+++...+|.+....    ...|+..+.|+.+.++.|.|...    ....+..+++|+.|+|++|-++...  .+.
T Consensus       155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La  234 (382)
T KOG1909|consen  155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA  234 (382)
T ss_pred             CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence            3345777777777665332    23445566777777777766432    2234666777777777777665322  223


Q ss_pred             CCCCCCCCCCEEEcCCCcCC
Q 048635          419 RNNVSWPLLQIVDFASNKFG  438 (562)
Q Consensus       419 ~~~~~~~~L~~L~l~~n~~~  438 (562)
                      ..+..|++|++|++++|.+.
T Consensus       235 kaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  235 KALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             HHhcccchheeecccccccc
Confidence            44555556666666666553

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.23  E-value=1.1e-11  Score=125.39  Aligned_cols=197  Identities=30%  Similarity=0.401  Sum_probs=95.0

Q ss_pred             EEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCC-CCCEEEcCCCCCcceEECCCCcCcccCCccccCCC
Q 048635          272 RVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESR-NLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRN  350 (562)
Q Consensus       272 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~-~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~  350 (562)
                      .+....+.+... ...+...+.++.+++.+|.+....+...... +|+.|++++|.+.            .+|.. ...+
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~------------~l~~~-~~~l  162 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE------------SLPSP-LRNL  162 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCcccccCccccccchhhcccccccccchh------------hhhhh-hhcc
Confidence            455665555311 2223344566666666666664444444442 5666666666554            33222 4455


Q ss_pred             CCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEE
Q 048635          351 CGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIV  430 (562)
Q Consensus       351 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L  430 (562)
                      ++|+.|++++|++. .++......+.|+.|++++|++.. +|........|+++.+++|.+.   ..+..+..+..+..+
T Consensus       163 ~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~---~~~~~~~~~~~l~~l  237 (394)
T COG4886         163 PNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII---ELLSSLSNLKNLSGL  237 (394)
T ss_pred             ccccccccCCchhh-hhhhhhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcce---ecchhhhhccccccc
Confidence            55666666666655 233333345556666666665555 2332233334555555555322   113334444444444


Q ss_pred             EcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccc
Q 048635          431 DFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG  510 (562)
Q Consensus       431 ~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~  510 (562)
                      .+.+|++.                        ..+..+..++.++.|++++|.++.. +. +..+.+++.|++++|.++.
T Consensus       238 ~l~~n~~~------------------------~~~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         238 ELSNNKLE------------------------DLPESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             ccCCceee------------------------eccchhccccccceecccccccccc-cc-ccccCccCEEeccCccccc
Confidence            44444441                        1133344444455555555555522 22 4455555555555555544


Q ss_pred             cCh
Q 048635          511 KIP  513 (562)
Q Consensus       511 ~~p  513 (562)
                      ..|
T Consensus       292 ~~~  294 (394)
T COG4886         292 ALP  294 (394)
T ss_pred             cch
Confidence            333

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.17  E-value=6e-13  Score=122.25  Aligned_cols=201  Identities=23%  Similarity=0.238  Sum_probs=111.8

Q ss_pred             ccCCCCCCCEEecCCccCccc----CCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCC
Q 048635           72 GLANLTNLTYLNLSHCGFTGE----IPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSG  147 (562)
Q Consensus        72 ~l~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~  147 (562)
                      .+..+..+++++||+|.+...    +...+...++|+..++++-.     +.+....+|..+.-                
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~f-----tGR~~~Ei~e~L~~----------------   83 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMF-----TGRLKDEIPEALKM----------------   83 (382)
T ss_pred             HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhh-----cCCcHHHHHHHHHH----------------
Confidence            355566677777777766432    33334555666666665421     11222222222110                


Q ss_pred             CCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChh------------
Q 048635          148 LGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEK------------  215 (562)
Q Consensus       148 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~------------  215 (562)
                          ...++..+++|++++||+|-+....+..|..+        +..+..|++|++.+|.+.......            
T Consensus        84 ----l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~l--------l~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~k  151 (382)
T KOG1909|consen   84 ----LSKALLGCPKLQKLDLSDNAFGPKGIRGLEEL--------LSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNK  151 (382)
T ss_pred             ----HHHHHhcCCceeEeeccccccCccchHHHHHH--------HHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHh
Confidence                01455677788888888887766666655543        556778888888888776222222            


Q ss_pred             -hhCCCCccEEeccCCCCCCCCCCC----CCCCCCCCEEEccCCcCCCC----CCCCCcCCCCCcEEEccCCccccc---
Q 048635          216 -ILQVSTLETLDLSYNPLLQGSLPN----FPKNSYLQNLNLANTSFSGI----LPDPIGILKYLTRVDLRSCSFTGP---  283 (562)
Q Consensus       216 -l~~l~~L~~L~L~~~~~~~~~~~~----~~~~~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~---  283 (562)
                       ...-+.|+++...+|++...+...    |...+.|+.+.++.|.|...    ....+..+++|+.|++++|.++..   
T Consensus       152 k~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~  231 (382)
T KOG1909|consen  152 KAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV  231 (382)
T ss_pred             ccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH
Confidence             123466777777777654444332    23356677777776665422    123345666677777776666532   


Q ss_pred             -CCccCCCCCCCCeeeCcCCccc
Q 048635          284 -IPTSTTNLTQLFHVDFSSNHFS  305 (562)
Q Consensus       284 -~~~~l~~l~~L~~L~l~~n~~~  305 (562)
                       +...+..++.|+.+++++|.+.
T Consensus       232 ~LakaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  232 ALAKALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             HHHHHhcccchheeecccccccc
Confidence             2234455566666666666554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=8.4e-12  Score=118.02  Aligned_cols=64  Identities=27%  Similarity=0.285  Sum_probs=37.7

Q ss_pred             cCCCCCcEEEccCCcccccCC-ccCCCCCCCCeeeCcCCcccccCC---CCCCCCCCCEEEcCCCCCc
Q 048635          265 GILKYLTRVDLRSCSFTGPIP-TSTTNLTQLFHVDFSSNHFSGPIP---SFHESRNLNYLDLSSNNLN  328 (562)
Q Consensus       265 ~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~---~~~~~~~L~~L~l~~n~l~  328 (562)
                      .++..|+.+.+.++....... .....+++++.|+++.|-+....+   ....+++|+.|.++.|++.
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~  185 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS  185 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc
Confidence            345667777777776652211 244567777777777776554221   1245666666666666554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.12  E-value=1.6e-11  Score=110.40  Aligned_cols=137  Identities=26%  Similarity=0.264  Sum_probs=100.7

Q ss_pred             cCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCccccc
Q 048635          287 STTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGV  366 (562)
Q Consensus       287 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~  366 (562)
                      .+..+..|+++|+++|.|+.......-.|.++.|++++|.+.            .+..  +..+++|+.||+++|.++ .
T Consensus       279 ~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~------------~v~n--La~L~~L~~LDLS~N~Ls-~  343 (490)
T KOG1259|consen  279 SADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR------------TVQN--LAELPQLQLLDLSGNLLA-E  343 (490)
T ss_pred             ecchHhhhhhccccccchhhhhhhhhhccceeEEecccccee------------eehh--hhhcccceEeecccchhH-h
Confidence            344556788888888888765555666788888888888776            2222  556677888888888877 4


Q ss_pred             CCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcC
Q 048635          367 VPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRL  441 (562)
Q Consensus       367 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  441 (562)
                      +.+|-..+-+.+.|.|++|.+.+  -..++.+-+|..|++++|++..... ...++++|.|+.+.+.+|++.+..
T Consensus       344 ~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~lde-V~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  344 CVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDE-VNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             hhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHH-hcccccccHHHHHhhcCCCccccc
Confidence            55666677888888888888765  3446778888889999888875432 456788888999999999886543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.10  E-value=1.2e-10  Score=117.93  Aligned_cols=200  Identities=28%  Similarity=0.392  Sum_probs=132.1

Q ss_pred             EEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCC-CCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCC
Q 048635          248 NLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLT-QLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNN  326 (562)
Q Consensus       248 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~  326 (562)
                      .+....+.+.... ..+...+.++.|++.+|.++ .++....... +|+.|++++|.+.........++.|+.|++++|+
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence            5666666653221 23344567788888888777 4555555553 7888888888877554556777888888888887


Q ss_pred             CcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEc
Q 048635          327 LNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVL  406 (562)
Q Consensus       327 l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  406 (562)
                      +.            .+|.. ....+.|+.|++++|++. .+|........|+++.+++|.+.. .+..+..+..+..+.+
T Consensus       175 l~------------~l~~~-~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l  239 (394)
T COG4886         175 LS------------DLPKL-LSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLEL  239 (394)
T ss_pred             hh------------hhhhh-hhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCccee-cchhhhhccccccccc
Confidence            76            44443 225566788888888877 455544455668888888885433 3445667777777777


Q ss_pred             cCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCcc
Q 048635          407 RSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTG  486 (562)
Q Consensus       407 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~  486 (562)
                      .+|++...   +..+..+++++.|++++|.++                        .++. ++.+.+++.|++++|.+..
T Consensus       240 ~~n~~~~~---~~~~~~l~~l~~L~~s~n~i~------------------------~i~~-~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         240 SNNKLEDL---PESIGNLSNLETLDLSNNQIS------------------------SISS-LGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             CCceeeec---cchhccccccceecccccccc------------------------cccc-ccccCccCEEeccCccccc
Confidence            77776632   456667777888888888773                        2222 6677788888888888775


Q ss_pred             CcChhc
Q 048635          487 SIPSSF  492 (562)
Q Consensus       487 ~~p~~l  492 (562)
                      ..|...
T Consensus       292 ~~~~~~  297 (394)
T COG4886         292 ALPLIA  297 (394)
T ss_pred             cchhhh
Confidence            555443

>PLN03150 hypothetical protein; Provisional

Probab=99.10  E-value=3.5e-10  Score=119.73  Aligned_cols=127  Identities=29%  Similarity=0.402  Sum_probs=94.8

Q ss_pred             CCCCCCCCCC----CcceeeeCCC-----CCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCcc
Q 048635           18 SQWSDSTNCC----DWTGVDCDEA-----GHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCG   88 (562)
Q Consensus        18 ~~w~~~~~~c----~w~g~~c~~~-----~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~   88 (562)
                      ..|. ++.|+    .|.|+.|...     ..|+.|+|+++ .+.+.+              |..+.++++|++|+|++|.
T Consensus       390 ~~W~-g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n-~L~g~i--------------p~~i~~L~~L~~L~Ls~N~  453 (623)
T PLN03150        390 FGWN-GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ-GLRGFI--------------PNDISKLRHLQSINLSGNS  453 (623)
T ss_pred             CCCC-CCCCCCcccccccceeeccCCCCceEEEEEECCCC-CccccC--------------CHHHhCCCCCCEEECCCCc
Confidence            3785 33442    7999999532     24888999998 777777              6788899999999999999


Q ss_pred             CcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCC-CCCCCEEec
Q 048635           89 FTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSF-LPNLQVLNL  167 (562)
Q Consensus        89 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~-l~~L~~L~l  167 (562)
                      +++.+|..++.+++|+.|++++|.+        ...+|..++++++|++|++++|.++...+   ..+.. ..++..+++
T Consensus       454 l~g~iP~~~~~l~~L~~LdLs~N~l--------sg~iP~~l~~L~~L~~L~Ls~N~l~g~iP---~~l~~~~~~~~~l~~  522 (623)
T PLN03150        454 IRGNIPPSLGSITSLEVLDLSYNSF--------NGSIPESLGQLTSLRILNLNGNSLSGRVP---AALGGRLLHRASFNF  522 (623)
T ss_pred             ccCcCChHHhCCCCCCEEECCCCCC--------CCCCchHHhcCCCCCEEECcCCcccccCC---hHHhhccccCceEEe
Confidence            9988998899999999999999984        35667778888888888888887765433   22322 234556666


Q ss_pred             ccCC
Q 048635          168 SSCL  171 (562)
Q Consensus       168 ~~n~  171 (562)
                      .+|.
T Consensus       523 ~~N~  526 (623)
T PLN03150        523 TDNA  526 (623)
T ss_pred             cCCc
Confidence            6664

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.10  E-value=1.8e-11  Score=110.14  Aligned_cols=58  Identities=31%  Similarity=0.319  Sum_probs=29.4

Q ss_pred             CcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccc
Q 048635          352 GLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFS  412 (562)
Q Consensus       352 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  412 (562)
                      .|+++|+++|.|+ .+.+...-.|.++.|++++|.+...  ..+..+++|+.|++++|.+.
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls  342 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA  342 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH
Confidence            3555555555554 3344444455555555555555442  12444555555555555554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=1.4e-11  Score=116.60  Aligned_cols=212  Identities=25%  Similarity=0.254  Sum_probs=128.9

Q ss_pred             CCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccc
Q 048635           98 SSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPIN  177 (562)
Q Consensus        98 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  177 (562)
                      .++.+|+.+.|.++....      ... -.....+++++.|||+.|-+....+ .+..+..+|+|+.|+++.|++.....
T Consensus       118 sn~kkL~~IsLdn~~V~~------~~~-~~~~k~~~~v~~LdLS~NL~~nw~~-v~~i~eqLp~Le~LNls~Nrl~~~~~  189 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVED------AGI-EEYSKILPNVRDLDLSRNLFHNWFP-VLKIAEQLPSLENLNLSSNRLSNFIS  189 (505)
T ss_pred             hhHHhhhheeecCccccc------cch-hhhhhhCCcceeecchhhhHHhHHH-HHHHHHhcccchhcccccccccCCcc
Confidence            456777777777766321      000 0356677888888888876665432 23445678888888888887644321


Q ss_pred             hhcccccCCCCcccccCCCCCCEEEccCCcCccc-CChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcC
Q 048635          178 HHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGK-YPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSF  256 (562)
Q Consensus       178 ~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l  256 (562)
                      ...           -..+.+|+.|.+++|.++.. +...+..+|+|+.|+++.|...........-+..|++|+|++|++
T Consensus       190 s~~-----------~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l  258 (505)
T KOG3207|consen  190 SNT-----------TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL  258 (505)
T ss_pred             ccc-----------hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc
Confidence            111           12355788888888888732 222334678888888888852222222223366788888888876


Q ss_pred             CCCC-CCCCcCCCCCcEEEccCCcccccC-Ccc-----CCCCCCCCeeeCcCCcccc--cCCCCCCCCCCCEEEcCCCCC
Q 048635          257 SGIL-PDPIGILKYLTRVDLRSCSFTGPI-PTS-----TTNLTQLFHVDFSSNHFSG--PIPSFHESRNLNYLDLSSNNL  327 (562)
Q Consensus       257 ~~~~-~~~~~~~~~L~~L~l~~n~l~~~~-~~~-----l~~l~~L~~L~l~~n~~~~--~~~~~~~~~~L~~L~l~~n~l  327 (562)
                      .... -...+.+|.|..|+++.+.+.+.- |+.     ...+++|++|++..|.+..  .......+++|+.|.+..|++
T Consensus       259 i~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l  338 (505)
T KOG3207|consen  259 IDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL  338 (505)
T ss_pred             cccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence            5321 133567788888888888776432 221     2456777788887777753  222334556666666666665


Q ss_pred             c
Q 048635          328 N  328 (562)
Q Consensus       328 ~  328 (562)
                      +
T Consensus       339 n  339 (505)
T KOG3207|consen  339 N  339 (505)
T ss_pred             c
Confidence            5

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.09  E-value=9.2e-11  Score=101.40  Aligned_cols=111  Identities=28%  Similarity=0.354  Sum_probs=40.5

Q ss_pred             CCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccC-CCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCC
Q 048635          311 FHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFP-RNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISD  389 (562)
Q Consensus       311 ~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  389 (562)
                      +.+...+++|++++|.++            .+..  +. .+.+|+.|++++|.++..  +.+..++.|++|++++|+++.
T Consensus        15 ~~n~~~~~~L~L~~n~I~------------~Ie~--L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~   78 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIS------------TIEN--LGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS   78 (175)
T ss_dssp             ---------------------------------S----TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S
T ss_pred             cccccccccccccccccc------------cccc--hhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc
Confidence            334455677777777665            2221  22 356788888888888743  357778889999999999988


Q ss_pred             cchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCC
Q 048635          390 NFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFG  438 (562)
Q Consensus       390 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~  438 (562)
                      ..+.....+|+|++|++++|++..... ...+..+++|++|++.+|++.
T Consensus        79 i~~~l~~~lp~L~~L~L~~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   79 ISEGLDKNLPNLQELYLSNNKISDLNE-LEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -CHHHHHH-TT--EEE-TTS---SCCC-CGGGGG-TT--EEE-TT-GGG
T ss_pred             cccchHHhCCcCCEEECcCCcCCChHH-hHHHHcCCCcceeeccCCccc
Confidence            433333468999999999999876543 355677899999999999884

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.06  E-value=4.5e-12  Score=123.58  Aligned_cols=126  Identities=28%  Similarity=0.354  Sum_probs=65.7

Q ss_pred             CCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCC
Q 048635          246 LQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSN  325 (562)
Q Consensus       246 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n  325 (562)
                      -...+++.|++. .+|..+..+..|+.+.+..|.+. .+|..++++..|+.++++.|+++..+..+..++          
T Consensus        77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp----------  144 (722)
T KOG0532|consen   77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP----------  144 (722)
T ss_pred             hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCChhhhcCc----------
Confidence            334555555555 34555555555566666555554 455555555555666665555553333322222          


Q ss_pred             CCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEE
Q 048635          326 NLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLV  405 (562)
Q Consensus       326 ~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  405 (562)
                                                 |+.|.+++|+++ .+|..++....|..||.+.|.+.. +|..++++.+|+.|+
T Consensus       145 ---------------------------Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~  195 (722)
T KOG0532|consen  145 ---------------------------LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLN  195 (722)
T ss_pred             ---------------------------ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhh-chHHhhhHHHHHHHH
Confidence                                       555555555555 444455555555555555555554 344445555555555


Q ss_pred             ccCcccc
Q 048635          406 LRSNNFS  412 (562)
Q Consensus       406 l~~n~l~  412 (562)
                      ++.|.+.
T Consensus       196 vrRn~l~  202 (722)
T KOG0532|consen  196 VRRNHLE  202 (722)
T ss_pred             Hhhhhhh
Confidence            5555544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.05  E-value=2e-10  Score=99.28  Aligned_cols=128  Identities=24%  Similarity=0.281  Sum_probs=47.5

Q ss_pred             CCCCCCCCEEEcccCCCCCcchHHhh-cCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhh
Q 048635          371 LANCNMLQVLDFRNNHISDNFPCWLR-NASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTL  449 (562)
Q Consensus       371 l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  449 (562)
                      +.+..++++|+|.+|.|+.+  +.++ .+.+|+.|++++|.+...    +.+..++.|++|++++|+++.          
T Consensus        15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l----~~l~~L~~L~~L~L~~N~I~~----------   78 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL----EGLPGLPRLKTLDLSNNRISS----------   78 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S------TT----TT--EEE--SS---S----------
T ss_pred             cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc----cCccChhhhhhcccCCCCCCc----------
Confidence            34556788999999988763  3354 477889999999988753    345667888888888888732          


Q ss_pred             hhhhhhhhCCCcccccccc-cCcCCCCEEeCcCCcCccC-cChhccCCCCCCeeeCCCCcccccC---hhhhcCCCCCCe
Q 048635          450 GMRYQATNKRCRDQATEEM-GRFKSLYALNMSHNALTGS-IPSSFGNLKQIESLDLSMNNLSGKI---PAQLASLNFLSV  524 (562)
Q Consensus       450 ~l~~~~~~~~~~~~~~~~l-~~l~~L~~L~Ls~n~i~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~---p~~l~~l~~L~~  524 (562)
                                    +.+.+ ..+++|++|++++|+|.+. .-..+..+++|+.|+|.+|.++..-   ...+..+|+|+.
T Consensus        79 --------------i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~  144 (175)
T PF14580_consen   79 --------------ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKV  144 (175)
T ss_dssp             ---------------CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SE
T ss_pred             --------------cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhhe
Confidence                          22223 3467888888888888642 1245677888888888888887421   234677888888


Q ss_pred             EeCc
Q 048635          525 LNLS  528 (562)
Q Consensus       525 L~l~  528 (562)
                      ||-.
T Consensus       145 LD~~  148 (175)
T PF14580_consen  145 LDGQ  148 (175)
T ss_dssp             ETTE
T ss_pred             eCCE
Confidence            8743

>PLN03150 hypothetical protein; Provisional

Probab=99.00  E-value=7.1e-10  Score=117.41  Aligned_cols=113  Identities=30%  Similarity=0.475  Sum_probs=80.1

Q ss_pred             CCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCc
Q 048635          401 LQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMS  480 (562)
Q Consensus       401 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls  480 (562)
                      ++.|+|++|.+.+..  +..+..+++|+.|+|++|.+.                       +.+|..+..+++|+.|+|+
T Consensus       420 v~~L~L~~n~L~g~i--p~~i~~L~~L~~L~Ls~N~l~-----------------------g~iP~~~~~l~~L~~LdLs  474 (623)
T PLN03150        420 IDGLGLDNQGLRGFI--PNDISKLRHLQSINLSGNSIR-----------------------GNIPPSLGSITSLEVLDLS  474 (623)
T ss_pred             EEEEECCCCCccccC--CHHHhCCCCCCEEECCCCccc-----------------------CcCChHHhCCCCCCEEECC
Confidence            566677777766544  666666777777777777763                       4455556777788888888


Q ss_pred             CCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCC-CCCCeEeCcCCcceecCCC
Q 048635          481 HNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASL-NFLSVLNLSYNNLVGQIPT  538 (562)
Q Consensus       481 ~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~l~~n~l~~~~p~  538 (562)
                      +|.+++.+|+.++++++|+.|+|++|++++.+|..+... .++..+++.+|+..+..|.
T Consensus       475 ~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~  533 (623)
T PLN03150        475 YNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG  533 (623)
T ss_pred             CCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence            888887778778888888888888888887787777653 4667777877775555553

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.93  E-value=1e-10  Score=118.32  Aligned_cols=245  Identities=23%  Similarity=0.246  Sum_probs=132.9

Q ss_pred             CCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCC
Q 048635          245 YLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSS  324 (562)
Q Consensus       245 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~  324 (562)
                      .++.+.+..|.+.. .-..+..+++|+.+++.+|.+.. +...+..+++|++|++++|.|+. +..+..++.|+.|++.+
T Consensus        73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~-i~~l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITK-LEGLSTLTLLKELNLSG  149 (414)
T ss_pred             hHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccc-ccchhhccchhhheecc
Confidence            34444444444432 11224445555555555555552 22224555666666666666652 23334444566666666


Q ss_pred             CCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCC-ccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCE
Q 048635          325 NNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVP-KSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQV  403 (562)
Q Consensus       325 n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  403 (562)
                      |.+.            .+..  +..+..|+.+++++|.+....+ . ...+.+++.+++.+|.+...  ..+..+..+..
T Consensus       150 N~i~------------~~~~--~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~  212 (414)
T KOG0531|consen  150 NLIS------------DISG--LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVL  212 (414)
T ss_pred             Ccch------------hccC--CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHH
Confidence            6655            1111  3335566666777766664332 1 35666677777777766552  22333344444


Q ss_pred             EEccCcccceecCCCCCCCCCC--CCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcC
Q 048635          404 LVLRSNNFSGHISYPRNNVSWP--LLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSH  481 (562)
Q Consensus       404 L~l~~n~l~~~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~  481 (562)
                      +++..|.+....    .+....  .|+.+++++|++.                        ..+..+..+..+..|++++
T Consensus       213 ~~l~~n~i~~~~----~l~~~~~~~L~~l~l~~n~i~------------------------~~~~~~~~~~~l~~l~~~~  264 (414)
T KOG0531|consen  213 LSLLDNKISKLE----GLNELVMLHLRELYLSGNRIS------------------------RSPEGLENLKNLPVLDLSS  264 (414)
T ss_pred             hhcccccceecc----CcccchhHHHHHHhcccCccc------------------------cccccccccccccccchhh
Confidence            566667665433    222222  2677777777762                        2224456667777788887


Q ss_pred             CcCccCcChhccCCCCCCeeeCCCCcccc---cChhh-hcCCCCCCeEeCcCCcceecCCCC
Q 048635          482 NALTGSIPSSFGNLKQIESLDLSMNNLSG---KIPAQ-LASLNFLSVLNLSYNNLVGQIPTA  539 (562)
Q Consensus       482 n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~---~~p~~-l~~l~~L~~L~l~~n~l~~~~p~~  539 (562)
                      |.+...  ..+...+.+..+..+.+++..   ..... ....+.++.+++.+|++....+..
T Consensus       265 n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (414)
T KOG0531|consen  265 NRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISSLD  324 (414)
T ss_pred             cccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccccc
Confidence            777633  234556667777777777652   11111 445677788888888777665543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.92  E-value=4.6e-10  Score=79.69  Aligned_cols=61  Identities=46%  Similarity=0.608  Sum_probs=56.7

Q ss_pred             CCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcc
Q 048635          472 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL  532 (562)
Q Consensus       472 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l  532 (562)
                      |+|++|++++|+++...++.|..+++|++|++++|+++...|+.|..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5789999999999976668999999999999999999988888999999999999999986

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.85  E-value=4.5e-10  Score=113.71  Aligned_cols=196  Identities=29%  Similarity=0.280  Sum_probs=104.0

Q ss_pred             CCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCcccc
Q 048635           75 NLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCK  154 (562)
Q Consensus        75 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~  154 (562)
                      .+..++.+++..|.+.. +...+..+++|++|++.+|.+.         .+...+..+++|++|++++|.|+.+     .
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~---------~i~~~l~~~~~L~~L~ls~N~I~~i-----~  134 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE---------KIENLLSSLVNLQVLDLSFNKITKL-----E  134 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchh---------hcccchhhhhcchheeccccccccc-----c
Confidence            45566666677776663 3334667777777777777642         1112255677777777777777766     3


Q ss_pred             ccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCC-hhhhCCCCccEEeccCCCCC
Q 048635          155 ALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYP-EKILQVSTLETLDLSYNPLL  233 (562)
Q Consensus       155 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~  233 (562)
                      .+..++.|+.|++++|.+....              .+..++.|+.+++++|.+....+ . ...+.+++.+.+.+|.+.
T Consensus       135 ~l~~l~~L~~L~l~~N~i~~~~--------------~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  135 GLSTLTLLKELNLSGNLISDIS--------------GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             chhhccchhhheeccCcchhcc--------------CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence            4566666777777777665421              13335566777777776664333 1 345566666666666542


Q ss_pred             CCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCC--CcEEEccCCcccccCCccCCCCCCCCeeeCcCCccc
Q 048635          234 QGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKY--LTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFS  305 (562)
Q Consensus       234 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~--L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  305 (562)
                        .+..+.....+..+++..|.++..-  .+..+..  |+.+++++|.+. ..+..+..+..+..+++.+|.+.
T Consensus       200 --~i~~~~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  200 --EIEGLDLLKKLVLLSLLDNKISKLE--GLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             --cccchHHHHHHHHhhcccccceecc--CcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccc
Confidence              2222222333333455555544221  1122222  555555555554 12133344444555555544443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.77  E-value=5e-09  Score=74.31  Aligned_cols=59  Identities=37%  Similarity=0.499  Sum_probs=35.5

Q ss_pred             CcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcc
Q 048635          352 GLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNN  410 (562)
Q Consensus       352 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  410 (562)
                      +|++|++++|+++...+++|..+++|++|++++|++....+..|..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45566666666665555556666666666666666665555556666666666666654

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.70  E-value=7.7e-09  Score=111.99  Aligned_cols=280  Identities=19%  Similarity=0.133  Sum_probs=140.8

Q ss_pred             CCCCCEEEccCCc--CCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEE
Q 048635          243 NSYLQNLNLANTS--FSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYL  320 (562)
Q Consensus       243 ~~~L~~L~L~~n~--l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L  320 (562)
                      .+.|++|-+..|.  +.......|..+|.|+.|++++|.-.+.+|..++.+-+|++|+++++.+...+..+..+..|.+|
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYL  623 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhee
Confidence            3456666666664  33333334566777777777766555567777777777777777777776666666667777777


Q ss_pred             EcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCc--ccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcC
Q 048635          321 DLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQ--LQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNA  398 (562)
Q Consensus       321 ~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~--l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l  398 (562)
                      ++..+...            ..+......+.+|++|.+..-.  .+......+..+..|+.+....... . +..-+..+
T Consensus       624 nl~~~~~l------------~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~-~~e~l~~~  689 (889)
T KOG4658|consen  624 NLEVTGRL------------ESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-L-LLEDLLGM  689 (889)
T ss_pred             cccccccc------------ccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-H-hHhhhhhh
Confidence            77665432            1112224456667777665543  1222223344555555555543332 0 11111222


Q ss_pred             CCCC----EEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhh-----h-hhhhhhhhCCCcccccccc
Q 048635          399 SSLQ----VLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTT-----L-GMRYQATNKRCRDQATEEM  468 (562)
Q Consensus       399 ~~L~----~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-----~-~l~~~~~~~~~~~~~~~~l  468 (562)
                      +.|.    .+.+.++...   .....+..+.+|+.|.+.++...........+.     + .+......+.-.-..+...
T Consensus       690 ~~L~~~~~~l~~~~~~~~---~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~  766 (889)
T KOG4658|consen  690 TRLRSLLQSLSIEGCSKR---TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL  766 (889)
T ss_pred             HHHHHHhHhhhhcccccc---eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh
Confidence            2222    3333222221   225566677788888887777643222110000     0 0000000111111122222


Q ss_pred             cCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCccccc-ChhhhcCC----------CCCCeEeCcCCcceecCC
Q 048635          469 GRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGK-IPAQLASL----------NFLSVLNLSYNNLVGQIP  537 (562)
Q Consensus       469 ~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l----------~~L~~L~l~~n~l~~~~p  537 (562)
                      ...++|+.|.+.++.....+......+..+..+-+..+.+.+. .-...+.+          +.|+.+.+..|+-.+..|
T Consensus       767 ~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P  846 (889)
T KOG4658|consen  767 LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLP  846 (889)
T ss_pred             hccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCc
Confidence            3457888888888876655544555555555555555555432 11112222          225666666666666666


Q ss_pred             CC
Q 048635          538 TA  539 (562)
Q Consensus       538 ~~  539 (562)
                      ..
T Consensus       847 ~~  848 (889)
T KOG4658|consen  847 LL  848 (889)
T ss_pred             cc
Confidence            43

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.62  E-value=1.9e-08  Score=109.02  Aligned_cols=224  Identities=21%  Similarity=0.189  Sum_probs=100.6

Q ss_pred             CCCEEEccCCc--CcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEE
Q 048635          197 NLTNLDLSQCD--LRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVD  274 (562)
Q Consensus       197 ~L~~L~l~~~~--~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  274 (562)
                      .|++|-+.++.  +.....+.|..++.|+.||+++|.-...-+..++.+.+|++|++++..+. .+|..++++..|.+|+
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln  624 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN  624 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence            45555555553  33233333455555555555554322222223444555555555555555 4455555555555555


Q ss_pred             ccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCC---CCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCC
Q 048635          275 LRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSF---HESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNC  351 (562)
Q Consensus       275 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~---~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~  351 (562)
                      +..+.....++.....+++|++|.+............   ..+..|+.+.......             .+-.. +..+.
T Consensus       625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-------------~~~e~-l~~~~  690 (889)
T KOG4658|consen  625 LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-------------LLLED-LLGMT  690 (889)
T ss_pred             cccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-------------HhHhh-hhhhH
Confidence            5555443333444444555555555443311111111   2222222222211110             00000 11111


Q ss_pred             CcC----EEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhc------CCCCCEEEccCcccceecCCCCCC
Q 048635          352 GLH----ILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRN------ASSLQVLVLRSNNFSGHISYPRNN  421 (562)
Q Consensus       352 ~L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~------l~~L~~L~l~~n~l~~~~~~~~~~  421 (562)
                      .|.    .+.+.++... ..+..+..+.+|+.|.+.++.+.+....+...      ++++..+.+.++.....   +...
T Consensus       691 ~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~---l~~~  766 (889)
T KOG4658|consen  691 RLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRD---LTWL  766 (889)
T ss_pred             HHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccc---cchh
Confidence            121    2222222222 33445667788888888888776533322111      23344444444432211   2233


Q ss_pred             CCCCCCCEEEcCCCcCCC
Q 048635          422 VSWPLLQIVDFASNKFGG  439 (562)
Q Consensus       422 ~~~~~L~~L~l~~n~~~~  439 (562)
                      ...++|+.|.+..++...
T Consensus       767 ~f~~~L~~l~l~~~~~~e  784 (889)
T KOG4658|consen  767 LFAPHLTSLSLVSCRLLE  784 (889)
T ss_pred             hccCcccEEEEecccccc
Confidence            456888999998887643

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.49  E-value=8.2e-09  Score=92.03  Aligned_cols=246  Identities=21%  Similarity=0.181  Sum_probs=129.4

Q ss_pred             CCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCcc---CcccC-------CccCCCCCCCcEEe
Q 048635           38 GHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCG---FTGEI-------PTEISSLPRLVTLD  107 (562)
Q Consensus        38 ~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~---i~~~~-------~~~~~~l~~L~~L~  107 (562)
                      ..++.+||||| .+...-  ...+        ...|.+-.+|+..+++.--   ..+.+       ..++.+||+|+..+
T Consensus        30 d~~~evdLSGN-tigtEA--~e~l--------~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~   98 (388)
T COG5238          30 DELVEVDLSGN-TIGTEA--MEEL--------CNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVD   98 (388)
T ss_pred             cceeEEeccCC-cccHHH--HHHH--------HHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeee
Confidence            56889999999 443221  0001        1235556666666666531   11112       22355677777777


Q ss_pred             CCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCcc----------ccccCCCCCCCEEecccCCCCCccc
Q 048635          108 LSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTER----------CKALSFLPNLQVLNLSSCLLLGPIN  177 (562)
Q Consensus       108 l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~----------~~~l~~l~~L~~L~l~~n~~~~~~~  177 (562)
                      ||+|.+...+    .-..-+.++.-+.|.+|.+++|.+.-+....          .+....-|.|++...+.|++..-..
T Consensus        99 LSDNAfg~~~----~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~  174 (388)
T COG5238          99 LSDNAFGSEF----PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSK  174 (388)
T ss_pred             ccccccCccc----chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcH
Confidence            7777643211    1111233555667777777777654322110          0122345677777777777655433


Q ss_pred             hhcccccCCCCcccccCCCCCCEEEccCCcCcccCC-----hhhhCCCCccEEeccCCCCCCCCCC----CCCCCCCCCE
Q 048635          178 HHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYP-----EKILQVSTLETLDLSYNPLLQGSLP----NFPKNSYLQN  248 (562)
Q Consensus       178 ~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-----~~l~~l~~L~~L~L~~~~~~~~~~~----~~~~~~~L~~  248 (562)
                      ..++..        +..-.+|+++.+.+|.|.....     ..+..+.+|+.|++..|.++.....    .++..+.|++
T Consensus       175 ~~~a~~--------l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE  246 (388)
T COG5238         175 ELSAAL--------LESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE  246 (388)
T ss_pred             HHHHHH--------HHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence            322211        1112467777777777653211     1223456777777777755432221    2333445777


Q ss_pred             EEccCCcCCCCCCCCC------cCCCCCcEEEccCCcccccCCcc-------CCCCCCCCeeeCcCCcccc
Q 048635          249 LNLANTSFSGILPDPI------GILKYLTRVDLRSCSFTGPIPTS-------TTNLTQLFHVDFSSNHFSG  306 (562)
Q Consensus       249 L~L~~n~l~~~~~~~~------~~~~~L~~L~l~~n~l~~~~~~~-------l~~l~~L~~L~l~~n~~~~  306 (562)
                      |.+.+|-++.....++      ...|+|..|....|.+.+.....       -..+|-|..|.+.+|.+..
T Consensus       247 L~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         247 LRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             ccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence            7777776654322211      23567777777777665332211       1246667777778887764

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.46  E-value=6.9e-09  Score=92.50  Aligned_cols=167  Identities=20%  Similarity=0.154  Sum_probs=111.3

Q ss_pred             cccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhh-------------hCCC
Q 048635          154 KALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKI-------------LQVS  220 (562)
Q Consensus       154 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l-------------~~l~  220 (562)
                      .++.+||+|+..++|.|-+....|..+..+        ++.-+.|++|.+++|.+.......+             ..-|
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~--------is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp  157 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSEFPEELGDL--------ISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKP  157 (388)
T ss_pred             HHHhcCCcceeeeccccccCcccchHHHHH--------HhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCC
Confidence            456788888888888888877776666543        6667788888888887653222212             2357


Q ss_pred             CccEEeccCCCCCCCCCCC----CCCCCCCCEEEccCCcCCCCC-----CCCCcCCCCCcEEEccCCccccc----CCcc
Q 048635          221 TLETLDLSYNPLLQGSLPN----FPKNSYLQNLNLANTSFSGIL-----PDPIGILKYLTRVDLRSCSFTGP----IPTS  287 (562)
Q Consensus       221 ~L~~L~L~~~~~~~~~~~~----~~~~~~L~~L~L~~n~l~~~~-----~~~~~~~~~L~~L~l~~n~l~~~----~~~~  287 (562)
                      .|++.....|++..++...    +.....|+++.+..|.|....     ...+.++.+|+.|++++|.++..    +...
T Consensus       158 ~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~a  237 (388)
T COG5238         158 KLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADA  237 (388)
T ss_pred             CceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHH
Confidence            8899999888876655432    222457888999888775321     12335678899999999988733    2334


Q ss_pred             CCCCCCCCeeeCcCCcccccCC-----CC--CCCCCCCEEEcCCCCCc
Q 048635          288 TTNLTQLFHVDFSSNHFSGPIP-----SF--HESRNLNYLDLSSNNLN  328 (562)
Q Consensus       288 l~~l~~L~~L~l~~n~~~~~~~-----~~--~~~~~L~~L~l~~n~l~  328 (562)
                      +..++.|++|.+.+|-++....     .|  ...++|..|...+|.+.
T Consensus       238 l~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         238 LCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             hcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence            5667788999998887764221     11  34566777777666543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=4.4e-09  Score=94.99  Aligned_cols=162  Identities=19%  Similarity=0.158  Sum_probs=76.7

Q ss_pred             cCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCC-CCCcc-hHHhhcCCCCCEEEccCcccceecCCCCCCCCC
Q 048635          347 FPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNH-ISDNF-PCWLRNASSLQVLVLRSNNFSGHISYPRNNVSW  424 (562)
Q Consensus       347 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~  424 (562)
                      +..+.+|+.|.+.|+++.+.+...++.-.+|+.|+++.|. ++... .-.+.+++.|++|+++.|.+...........--
T Consensus       206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his  285 (419)
T KOG2120|consen  206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS  285 (419)
T ss_pred             HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence            3444455555555555555555555555556666665553 22211 113455566666666666544321101111112


Q ss_pred             CCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCc-CccCcChhccCCCCCCeeeC
Q 048635          425 PLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNA-LTGSIPSSFGNLKQIESLDL  503 (562)
Q Consensus       425 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~p~~l~~l~~L~~L~L  503 (562)
                      ++|..|+++++.-.          ++          ...+..-...+|+|..||||+|. ++......|-+++.|++|.+
T Consensus       286 e~l~~LNlsG~rrn----------l~----------~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  286 ETLTQLNLSGYRRN----------LQ----------KSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             hhhhhhhhhhhHhh----------hh----------hhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            44555555554320          00          00011112345666666666654 33333334555666666666


Q ss_pred             CCCcccccChhh---hcCCCCCCeEeCcCC
Q 048635          504 SMNNLSGKIPAQ---LASLNFLSVLNLSYN  530 (562)
Q Consensus       504 s~n~l~~~~p~~---l~~l~~L~~L~l~~n  530 (562)
                      +.|..  .+|+.   +...|+|.+|++.++
T Consensus       346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  346 SRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            66653  34443   334456666666554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.35  E-value=4.5e-08  Score=88.56  Aligned_cols=61  Identities=25%  Similarity=0.308  Sum_probs=35.0

Q ss_pred             CCCCcEEEccCCcccc--cCCccCCCCCCCCeeeCcCCcccccCCCC-CCCCCCCEEEcCCCCC
Q 048635          267 LKYLTRVDLRSCSFTG--PIPTSTTNLTQLFHVDFSSNHFSGPIPSF-HESRNLNYLDLSSNNL  327 (562)
Q Consensus       267 ~~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~-~~~~~L~~L~l~~n~l  327 (562)
                      ++.++.+++.+|.+++  ++...+.++|.|+.|+++.|.+...+... ....+|+++.+.+..+
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L  133 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL  133 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC
Confidence            4566667777776652  23334556666777777766666544443 3445566666555544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.33  E-value=1.2e-07  Score=85.95  Aligned_cols=43  Identities=28%  Similarity=0.334  Sum_probs=22.9

Q ss_pred             ccCcCCCCEEeCcCCcCccC-cChhccCCCCCCeeeCCCCcccc
Q 048635          468 MGRFKSLYALNMSHNALTGS-IPSSFGNLKQIESLDLSMNNLSG  510 (562)
Q Consensus       468 l~~l~~L~~L~Ls~n~i~~~-~p~~l~~l~~L~~L~Ls~n~l~~  510 (562)
                      ...+|.+-.|+|+.++|... .-+.+..+++|..|.++++.+.+
T Consensus       220 se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  220 SEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             CCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            33444555666666666521 12345556666666666666553

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.31  E-value=6.8e-09  Score=104.55  Aligned_cols=127  Identities=30%  Similarity=0.273  Sum_probs=63.0

Q ss_pred             CCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCC
Q 048635          293 QLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLA  372 (562)
Q Consensus       293 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  372 (562)
                      .|...+++.|.+......+.-++.++.|+|++|+++            .+.  .+..++.|++|||+.|.+..+.--...
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~------------~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~  230 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFT------------KVD--NLRRLPKLKHLDLSYNCLRHVPQLSMV  230 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhh------------hhH--HHHhcccccccccccchhccccccchh
Confidence            455555566655544334444555666666666554            111  144555566666666655532211222


Q ss_pred             CCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcC
Q 048635          373 NCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKF  437 (562)
Q Consensus       373 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~  437 (562)
                      +++ |+.|.+++|.++..  ..+.++.+|+.|+++.|-+.+... .+.+..+..|+.|.|.+|++
T Consensus       231 gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hse-L~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  231 GCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSE-LEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             hhh-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchh-hhHHHHHHHHHHHhhcCCcc
Confidence            233 55666666655442  224455556666666555543321 22334445555555555554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=7.3e-09  Score=93.56  Aligned_cols=181  Identities=26%  Similarity=0.282  Sum_probs=124.3

Q ss_pred             CCCCEEecCCccCccc-CCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCcc-CCCCCCcccc
Q 048635           77 TNLTYLNLSHCGFTGE-IPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVD-LSGLGTERCK  154 (562)
Q Consensus        77 ~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~  154 (562)
                      +.|++||||+..|+.. +-.-+..|.+|+.|.+.++++        ...+...+++..+|+.|+++.++ +++...  .-
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~L--------dD~I~~~iAkN~~L~~lnlsm~sG~t~n~~--~l  254 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRL--------DDPIVNTIAKNSNLVRLNLSMCSGFTENAL--QL  254 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhcccccccc--------CcHHHHHHhccccceeeccccccccchhHH--HH
Confidence            3589999999887632 333367889999999998874        45566678888999999999864 443322  13


Q ss_pred             ccCCCCCCCEEecccCCCCCccch-hcccccCCCCcccccCCCCCCEEEccCCcCc---ccCChhhhCCCCccEEeccCC
Q 048635          155 ALSFLPNLQVLNLSSCLLLGPINH-HLANLRSHSQFFFVANLLNLTNLDLSQCDLR---GKYPEKILQVSTLETLDLSYN  230 (562)
Q Consensus       155 ~l~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~---~~~~~~l~~l~~L~~L~L~~~  230 (562)
                      .+..|+.|..|++++|........ .+.+           --++|+.|+++|+.-.   ..+..-...+++|.+|||++|
T Consensus       255 l~~scs~L~~LNlsWc~l~~~~Vtv~V~h-----------ise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~  323 (419)
T KOG2120|consen  255 LLSSCSRLDELNLSWCFLFTEKVTVAVAH-----------ISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDS  323 (419)
T ss_pred             HHHhhhhHhhcCchHhhccchhhhHHHhh-----------hchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccc
Confidence            457899999999999976553321 1112           1246888999887532   112222357899999999987


Q ss_pred             CCCCC-CCCCCCCCCCCCEEEccCCcCCCCCCC---CCcCCCCCcEEEccCCcc
Q 048635          231 PLLQG-SLPNFPKNSYLQNLNLANTSFSGILPD---PIGILKYLTRVDLRSCSF  280 (562)
Q Consensus       231 ~~~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~~~~L~~L~l~~n~l  280 (562)
                      ..... ....|.+++.|++|.++.|..  ++|.   .+...|.|.+|++.++--
T Consensus       324 v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  324 VMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             cccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccccC
Confidence            54332 233577789999999999863  2333   346788999999988643

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.21  E-value=2.3e-08  Score=100.81  Aligned_cols=125  Identities=34%  Similarity=0.320  Sum_probs=66.5

Q ss_pred             CCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhh
Q 048635          377 LQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQAT  456 (562)
Q Consensus       377 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~  456 (562)
                      |...+.+.|.+.. ....+.-++.|+.|+|+.|++...    ..+..++.|++|||++|.+.                  
T Consensus       166 L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v----~~Lr~l~~LkhLDlsyN~L~------------------  222 (1096)
T KOG1859|consen  166 LATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKV----DNLRRLPKLKHLDLSYNCLR------------------  222 (1096)
T ss_pred             HhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhh----HHHHhcccccccccccchhc------------------
Confidence            4455555555543 334455555666666666665531    24455566666666666552                  


Q ss_pred             hCCCcccccc-cccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccC-hhhhcCCCCCCeEeCcCCcce
Q 048635          457 NKRCRDQATE-EMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKI-PAQLASLNFLSVLNLSYNNLV  533 (562)
Q Consensus       457 ~~~~~~~~~~-~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~  533 (562)
                            .+|. ....+. |+.|++++|.++..  ..+.++.+|+.||+++|-+.+-. -.-+..+..|++|.|.||++.
T Consensus       223 ------~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  223 ------HVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             ------cccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence                  1111 111222 66677777766622  24566677777777777665411 111344556677777777664

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.15  E-value=1.5e-07  Score=75.21  Aligned_cols=137  Identities=20%  Similarity=0.292  Sum_probs=70.3

Q ss_pred             CCEEEcccCCCCCc--chHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhh
Q 048635          377 LQVLDFRNNHISDN--FPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQ  454 (562)
Q Consensus       377 L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~  454 (562)
                      +..++|+.|++-.+  .+..+.....|+..++++|.+....  +.....++.++.+++++|.+                 
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp--~kft~kf~t~t~lNl~~nei-----------------   89 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFP--KKFTIKFPTATTLNLANNEI-----------------   89 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCC--HHHhhccchhhhhhcchhhh-----------------
Confidence            33455555554321  1122333444555566666555333  22333344555555555554                 


Q ss_pred             hhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCccee
Q 048635          455 ATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVG  534 (562)
Q Consensus       455 ~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~  534 (562)
                             ..+|..+..++.|+.|+++.|.+. ..|.-+..+.++-.|+..+|.+.. +|-.+-.-+..-..++.++++.+
T Consensus        90 -------sdvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~e-id~dl~~s~~~al~~lgnepl~~  160 (177)
T KOG4579|consen   90 -------SDVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAE-IDVDLFYSSLPALIKLGNEPLGD  160 (177)
T ss_pred             -------hhchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCcccc-CcHHHhccccHHHHHhcCCcccc
Confidence                   244555666667777777777776 555555556667777777776663 33223222333333445556665


Q ss_pred             cCCCCCC
Q 048635          535 QIPTAKH  541 (562)
Q Consensus       535 ~~p~~~~  541 (562)
                      .-|...+
T Consensus       161 ~~~~klq  167 (177)
T KOG4579|consen  161 ETKKKLQ  167 (177)
T ss_pred             cCccccc
Confidence            5554433

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.09  E-value=1.3e-07  Score=75.66  Aligned_cols=114  Identities=21%  Similarity=0.279  Sum_probs=89.9

Q ss_pred             CCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCccccccccc-CcCCCCEE
Q 048635          399 SSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMG-RFKSLYAL  477 (562)
Q Consensus       399 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~-~l~~L~~L  477 (562)
                      ..+..++|+.|.+.........+.....|..+++++|.+                        ..+|+.|. ..+.++.|
T Consensus        27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f------------------------k~fp~kft~kf~t~t~l   82 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF------------------------KKFPKKFTIKFPTATTL   82 (177)
T ss_pred             HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchh------------------------hhCCHHHhhccchhhhh
Confidence            356778888888764433344556667788899999998                        23444444 34588999


Q ss_pred             eCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceecCCCC
Q 048635          478 NMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTA  539 (562)
Q Consensus       478 ~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~  539 (562)
                      ++++|.|+ .+|+.+..++.|+.|+++.|.+. ..|..+..+.+|-.|+.-+|.+. ++|.+
T Consensus        83 Nl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~d  141 (177)
T KOG4579|consen   83 NLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVD  141 (177)
T ss_pred             hcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHH
Confidence            99999999 68888999999999999999999 67888888999999999999887 66655

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.03  E-value=4.6e-06  Score=53.95  Aligned_cols=36  Identities=39%  Similarity=0.660  Sum_probs=19.3

Q ss_pred             CCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCccc
Q 048635          473 SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS  509 (562)
Q Consensus       473 ~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~  509 (562)
                      +|++|++++|+|+ .+|..+++|++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555666666665 34444555666666666666555

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.03  E-value=3.7e-06  Score=54.43  Aligned_cols=37  Identities=43%  Similarity=0.653  Sum_probs=32.2

Q ss_pred             CCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcce
Q 048635          496 KQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV  533 (562)
Q Consensus       496 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~  533 (562)
                      ++|++|++++|+|+ .+|..+.++++|++|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            57999999999999 56777999999999999999998

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.86  E-value=7.8e-05  Score=72.97  Aligned_cols=137  Identities=18%  Similarity=0.247  Sum_probs=77.7

Q ss_pred             CCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccC-CCCCcc
Q 048635          313 ESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNN-HISDNF  391 (562)
Q Consensus       313 ~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~  391 (562)
                      .+.+++.|++++|.++            .+|.  ++  ++|+.|.+++|.--..+|+.+  .++|++|++++| .+.. +
T Consensus        50 ~~~~l~~L~Is~c~L~------------sLP~--LP--~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s-L  110 (426)
T PRK15386         50 EARASGRLYIKDCDIE------------SLPV--LP--NELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG-L  110 (426)
T ss_pred             HhcCCCEEEeCCCCCc------------ccCC--CC--CCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc-c
Confidence            4677888888888766            4552  22  258888887754333555544  357888888877 4432 3


Q ss_pred             hHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCc
Q 048635          392 PCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRF  471 (562)
Q Consensus       392 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l  471 (562)
                      |      ++|+.|.+..+.......+|      ++|+.|.+.+++...                     ....+..+  .
T Consensus       111 P------~sLe~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~---------------------~~~lp~~L--P  155 (426)
T PRK15386        111 P------ESVRSLEIKGSATDSIKNVP------NGLTSLSINSYNPEN---------------------QARIDNLI--S  155 (426)
T ss_pred             c------cccceEEeCCCCCcccccCc------chHhheecccccccc---------------------cccccccc--C
Confidence            3      35677777665544322222      345666664322100                     00111111  1


Q ss_pred             CCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCC
Q 048635          472 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMN  506 (562)
Q Consensus       472 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n  506 (562)
                      ++|++|++++|... ..|..+.  .+|+.|+++.+
T Consensus       156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            57888888888766 4555444  57888888765

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.85  E-value=2.7e-05  Score=67.03  Aligned_cols=91  Identities=24%  Similarity=0.211  Sum_probs=64.3

Q ss_pred             cCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcc-hHHhhcCCCCCEEEccCcccceecCCC-CCCCCC
Q 048635          347 FPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNF-PCWLRNASSLQVLVLRSNNFSGHISYP-RNNVSW  424 (562)
Q Consensus       347 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~  424 (562)
                      |+.++.|.+|.+.+|.|+.+-|..-.-+++|+.|.+.+|++.... ..-+..+|.|++|.+-+|++......- -.+..+
T Consensus        60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~kl  139 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKL  139 (233)
T ss_pred             CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEec
Confidence            677777888888888888666655555677888888888776521 123667888999998888877543322 235678


Q ss_pred             CCCCEEEcCCCcC
Q 048635          425 PLLQIVDFASNKF  437 (562)
Q Consensus       425 ~~L~~L~l~~n~~  437 (562)
                      |+|+.||..+-..
T Consensus       140 p~l~~LDF~kVt~  152 (233)
T KOG1644|consen  140 PSLRTLDFQKVTR  152 (233)
T ss_pred             CcceEeehhhhhH
Confidence            8899998876554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.83  E-value=2.6e-05  Score=67.10  Aligned_cols=112  Identities=22%  Similarity=0.317  Sum_probs=76.3

Q ss_pred             CCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCcccccc
Q 048635           77 TNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKAL  156 (562)
Q Consensus        77 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l  156 (562)
                      .....+||++|.+. .++ .|..++.|.+|.+.+|.++        ...|..-.-+++|+.|.+.+|++.++..  ...+
T Consensus        42 d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt--------~I~p~L~~~~p~l~~L~LtnNsi~~l~d--l~pL  109 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRIT--------RIDPDLDTFLPNLKTLILTNNSIQELGD--LDPL  109 (233)
T ss_pred             cccceecccccchh-hcc-cCCCccccceEEecCCcce--------eeccchhhhccccceEEecCcchhhhhh--cchh
Confidence            34567888888776 233 3777888888888888753        3334444456778888888888877654  3567


Q ss_pred             CCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCc
Q 048635          157 SFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLR  209 (562)
Q Consensus       157 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~  209 (562)
                      ..+|+|++|.+-+|.+.......         ...+..+++|+.||+++-...
T Consensus       110 a~~p~L~~Ltll~Npv~~k~~YR---------~yvl~klp~l~~LDF~kVt~~  153 (233)
T KOG1644|consen  110 ASCPKLEYLTLLGNPVEHKKNYR---------LYVLYKLPSLRTLDFQKVTRK  153 (233)
T ss_pred             ccCCccceeeecCCchhcccCce---------eEEEEecCcceEeehhhhhHH
Confidence            78888888888888765543211         234677888999888876543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.81  E-value=9.9e-05  Score=72.23  Aligned_cols=139  Identities=16%  Similarity=0.210  Sum_probs=84.6

Q ss_pred             CCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCC-ccccc
Q 048635          288 TTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGN-QLQGV  366 (562)
Q Consensus       288 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~  366 (562)
                      +..+..++.|++++|.+... |.  -..+|+.|.+++|.-.           ..+|.. ++  ++|+.|++++| .+. .
T Consensus        48 ~~~~~~l~~L~Is~c~L~sL-P~--LP~sLtsL~Lsnc~nL-----------tsLP~~-LP--~nLe~L~Ls~Cs~L~-s  109 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESL-PV--LPNELTEITIENCNNL-----------TTLPGS-IP--EGLEKLTVCHCPEIS-G  109 (426)
T ss_pred             HHHhcCCCEEEeCCCCCccc-CC--CCCCCcEEEccCCCCc-----------ccCCch-hh--hhhhheEccCccccc-c
Confidence            33467899999999987754 32  2347999999885421           144433 22  46999999998 454 3


Q ss_pred             CCccCCCCCCCCEEEcccCCCCCcchHHhhcC-CCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhh
Q 048635          367 VPKSLANCNMLQVLDFRNNHISDNFPCWLRNA-SSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKC  445 (562)
Q Consensus       367 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  445 (562)
                      +|      .+|+.|+++++....     +..+ ++|+.|.+.+++.......+  ..-.++|++|++++|...       
T Consensus       110 LP------~sLe~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp--~~LPsSLk~L~Is~c~~i-------  169 (426)
T PRK15386        110 LP------ESVRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARID--NLISPSLKTLSLTGCSNI-------  169 (426)
T ss_pred             cc------cccceEEeCCCCCcc-----cccCcchHhheeccccccccccccc--cccCCcccEEEecCCCcc-------
Confidence            44      357888887765543     1122 35778887543311111111  112368999999988752       


Q ss_pred             hhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCc
Q 048635          446 STTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNA  483 (562)
Q Consensus       446 ~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~  483 (562)
                                       ..|+.+.  .+|+.|.++.+.
T Consensus       170 -----------------~LP~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        170 -----------------ILPEKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             -----------------cCccccc--ccCcEEEecccc
Confidence                             1233333  588999998774

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.66  E-value=5.2e-07  Score=85.69  Aligned_cols=136  Identities=18%  Similarity=0.189  Sum_probs=67.9

Q ss_pred             CCCCCCEEEcccCC-CCCcchHHh-hcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhh
Q 048635          373 NCNMLQVLDFRNNH-ISDNFPCWL-RNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLG  450 (562)
Q Consensus       373 ~l~~L~~L~L~~n~-l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  450 (562)
                      ++.+|+.|-+++|+ +++.-...+ .+++.|+.+++.++.......+...-..++.|+.+.+++|.....-  +.     
T Consensus       318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~--gi-----  390 (483)
T KOG4341|consen  318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE--GI-----  390 (483)
T ss_pred             CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhh--hh-----
Confidence            45566666666664 222222222 2356666666666654433333344445666666666655431000  00     


Q ss_pred             hhhhhhhCCCcccccccccCcCCCCEEeCcCCcC-ccCcChhccCCCCCCeeeCCCCccc--ccChhhhcCCCCCCeEe
Q 048635          451 MRYQATNKRCRDQATEEMGRFKSLYALNMSHNAL-TGSIPSSFGNLKQIESLDLSMNNLS--GKIPAQLASLNFLSVLN  526 (562)
Q Consensus       451 l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i-~~~~p~~l~~l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~  526 (562)
                                 ......-..+..|..+.+++++. ++..-+.+..+++|+.+++-+++--  ..+...-..+|++++.-
T Consensus       391 -----------~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a  458 (483)
T KOG4341|consen  391 -----------RHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA  458 (483)
T ss_pred             -----------hhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence                       00111123455677777777764 3444455667777777777776532  12222234556665543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.65  E-value=7.3e-07  Score=84.72  Aligned_cols=13  Identities=23%  Similarity=0.306  Sum_probs=6.1

Q ss_pred             CCCCCcEEeCCCC
Q 048635           99 SLPRLVTLDLSSR  111 (562)
Q Consensus        99 ~l~~L~~L~l~~n  111 (562)
                      .++++++|++.+|
T Consensus       162 ~CpnIehL~l~gc  174 (483)
T KOG4341|consen  162 NCPNIEHLALYGC  174 (483)
T ss_pred             hCCchhhhhhhcc
Confidence            4444444444444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.61  E-value=3.1e-05  Score=82.25  Aligned_cols=110  Identities=25%  Similarity=0.278  Sum_probs=60.7

Q ss_pred             CCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccc-cCCccCCCCCCCCEEEcccCCCCCcchH
Q 048635          315 RNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQG-VVPKSLANCNMLQVLDFRNNHISDNFPC  393 (562)
Q Consensus       315 ~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~  393 (562)
                      .+|++|++++...          +....|...-..+|+|+.|.+.+-.+.. ..-....++++|..||+|++.++..  .
T Consensus       122 ~nL~~LdI~G~~~----------~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~  189 (699)
T KOG3665|consen  122 QNLQHLDISGSEL----------FSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--S  189 (699)
T ss_pred             HhhhhcCccccch----------hhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--H
Confidence            5677777766432          1223333334456667777776654432 2223345667777777777777663  4


Q ss_pred             HhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcC
Q 048635          394 WLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKF  437 (562)
Q Consensus       394 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~  437 (562)
                      +++.+++|+.|.+.+=.+..... ...+..+++|+.||+|..+.
T Consensus       190 GIS~LknLq~L~mrnLe~e~~~~-l~~LF~L~~L~vLDIS~~~~  232 (699)
T KOG3665|consen  190 GISRLKNLQVLSMRNLEFESYQD-LIDLFNLKKLRVLDISRDKN  232 (699)
T ss_pred             HHhccccHHHHhccCCCCCchhh-HHHHhcccCCCeeecccccc
Confidence            56667777777666554442110 22344566666666665544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.54  E-value=0.00036  Score=58.00  Aligned_cols=88  Identities=17%  Similarity=0.276  Sum_probs=42.7

Q ss_pred             CCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCC
Q 048635          342 LSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNN  421 (562)
Q Consensus       342 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  421 (562)
                      ++..+|.++.+|+.+.+.. .+......+|.++++|+.+++.++ +.......|..+++++.+.+.+ .+....  ...+
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~--~~~F   77 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIG--DNAF   77 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE---TTTT
T ss_pred             ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccc--cccc
Confidence            4444566766777777764 455455666777777777777664 5554445566666777777754 333222  3334


Q ss_pred             CCCCCCCEEEcCC
Q 048635          422 VSWPLLQIVDFAS  434 (562)
Q Consensus       422 ~~~~~L~~L~l~~  434 (562)
                      ..+++|+.+++..
T Consensus        78 ~~~~~l~~i~~~~   90 (129)
T PF13306_consen   78 SNCTNLKNIDIPS   90 (129)
T ss_dssp             TT-TTECEEEETT
T ss_pred             cccccccccccCc
Confidence            4455555555543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.51  E-value=2e-05  Score=83.67  Aligned_cols=62  Identities=26%  Similarity=0.298  Sum_probs=29.0

Q ss_pred             cCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCC-cchHHhhcCCCCCEEEccCcc
Q 048635          347 FPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISD-NFPCWLRNASSLQVLVLRSNN  410 (562)
Q Consensus       347 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~  410 (562)
                      +.++++|..||+++++++..  ..++.+++|+.|.+.+=.+.. ..-..+.++++|+.||+|..+
T Consensus       169 c~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  169 CASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK  231 (699)
T ss_pred             hhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence            34444555555555555422  344455555555555444432 111223345555555555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.21  E-value=0.0014  Score=54.35  Aligned_cols=121  Identities=18%  Similarity=0.312  Sum_probs=38.6

Q ss_pred             CCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCccccc-CCCCCCCCCCCEEEcCCCCCcceEECCCCcCccc
Q 048635          263 PIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGP-IPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGT  341 (562)
Q Consensus       263 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~  341 (562)
                      .|..+++|+.+.+.. .+.......+..+++|+.+.+.++ +... ...+..+++++.+.+.. .+.            .
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~------------~   71 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK------------S   71 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-------------E
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc------------c
Confidence            344444455555442 233233334444445555555443 2211 11233343444444432 111            2


Q ss_pred             CCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCC
Q 048635          342 LSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSL  401 (562)
Q Consensus       342 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  401 (562)
                      ++...|..+++++.+++..+ +......++.++ .++.+.+.. .+.......|.++++|
T Consensus        72 i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   72 IGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             E-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            33333444555555555443 332333444444 555555543 3333333444444444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.77  E-value=0.00056  Score=61.73  Aligned_cols=92  Identities=25%  Similarity=0.326  Sum_probs=60.9

Q ss_pred             cCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCcc
Q 048635           73 LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTER  152 (562)
Q Consensus        73 l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~  152 (562)
                      .-.+..|+.|++.+..++..  ..|..+++|++|.++.|.+.      +.....-...++++|+++++++|++..+..  
T Consensus        39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~------~~~~l~vl~e~~P~l~~l~ls~Nki~~lst--  108 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRR------VSGGLEVLAEKAPNLKVLNLSGNKIKDLST--  108 (260)
T ss_pred             cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCccc------ccccceehhhhCCceeEEeecCCccccccc--
Confidence            34556677777777776632  23667888888888888421      223333345566888888888888775332  


Q ss_pred             ccccCCCCCCCEEecccCCCCC
Q 048635          153 CKALSFLPNLQVLNLSSCLLLG  174 (562)
Q Consensus       153 ~~~l~~l~~L~~L~l~~n~~~~  174 (562)
                      ...+..+.+|..|++.+|..+.
T Consensus       109 l~pl~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  109 LRPLKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             cchhhhhcchhhhhcccCCccc
Confidence            3456777888888888886655

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.77  E-value=0.00054  Score=44.13  Aligned_cols=22  Identities=41%  Similarity=1.143  Sum_probs=15.7

Q ss_pred             CCCCCCCCCC--CCCCCcceeeeC
Q 048635           14 PAKMSQWSDS--TNCCDWTGVDCD   35 (562)
Q Consensus        14 ~~~~~~w~~~--~~~c~w~g~~c~   35 (562)
                      .+.+..|+..  .+||.|.||+|+
T Consensus        20 ~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen   20 SGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             -CCCTT--TT--S-CCCSTTEEE-
T ss_pred             CcccccCCCcCCCCCeeeccEEeC
Confidence            4889999986  799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.75  E-value=4.9e-05  Score=68.68  Aligned_cols=86  Identities=23%  Similarity=0.265  Sum_probs=43.4

Q ss_pred             CcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEE
Q 048635          352 GLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVD  431 (562)
Q Consensus       352 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~  431 (562)
                      +.+.|++.||.+.++  .....++.|+.|.|+-|+|+..-|  +..|+.|++|+|..|.|..... ...+.++|+|+.|.
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldE-L~YLknlpsLr~LW   94 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDE-LEYLKNLPSLRTLW   94 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHH-HHHHhcCchhhhHh
Confidence            345555555555432  223345555666666665555333  4455556666666555543221 23344555666666


Q ss_pred             cCCCcCCCcCC
Q 048635          432 FASNKFGGRLS  442 (562)
Q Consensus       432 l~~n~~~~~~~  442 (562)
                      |..|+..|.-+
T Consensus        95 L~ENPCc~~ag  105 (388)
T KOG2123|consen   95 LDENPCCGEAG  105 (388)
T ss_pred             hccCCcccccc
Confidence            66665544443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.67  E-value=6.6e-05  Score=67.89  Aligned_cols=82  Identities=23%  Similarity=0.231  Sum_probs=55.0

Q ss_pred             CCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCccc
Q 048635          132 LKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGK  211 (562)
Q Consensus       132 l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~  211 (562)
                      +.+.+.|++.++.+.++     ..+.+++.|++|.|+-|+|+...|              +..+++|++|+|..|.|.+.
T Consensus        18 l~~vkKLNcwg~~L~DI-----sic~kMp~lEVLsLSvNkIssL~p--------------l~rCtrLkElYLRkN~I~sl   78 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI-----SICEKMPLLEVLSLSVNKISSLAP--------------LQRCTRLKELYLRKNCIESL   78 (388)
T ss_pred             HHHhhhhcccCCCccHH-----HHHHhcccceeEEeeccccccchh--------------HHHHHHHHHHHHHhcccccH
Confidence            34556677777777665     355677788888888877765432              56677788888888777632


Q ss_pred             C-ChhhhCCCCccEEeccCCCC
Q 048635          212 Y-PEKILQVSTLETLDLSYNPL  232 (562)
Q Consensus       212 ~-~~~l~~l~~L~~L~L~~~~~  232 (562)
                      . ...+.++++|+.|.|..|+-
T Consensus        79 dEL~YLknlpsLr~LWL~ENPC  100 (388)
T KOG2123|consen   79 DELEYLKNLPSLRTLWLDENPC  100 (388)
T ss_pred             HHHHHHhcCchhhhHhhccCCc
Confidence            1 23456777888888777764

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.52  E-value=0.0016  Score=58.80  Aligned_cols=114  Identities=17%  Similarity=0.110  Sum_probs=74.5

Q ss_pred             chHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccC
Q 048635          391 FPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGR  470 (562)
Q Consensus       391 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~  470 (562)
                      +......+..|+.+.+.+..++..    ..+..+++|+.|+++.|....                     .+.+..-...
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~----~~~P~Lp~LkkL~lsdn~~~~---------------------~~~l~vl~e~   89 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTL----TNFPKLPKLKKLELSDNYRRV---------------------SGGLEVLAEK   89 (260)
T ss_pred             cccccccccchhhhhhhccceeec----ccCCCcchhhhhcccCCcccc---------------------cccceehhhh
Confidence            333444567788888888888753    345577899999999994422                     1223333445


Q ss_pred             cCCCCEEeCcCCcCccC-cChhccCCCCCCeeeCCCCcccccC---hhhhcCCCCCCeEeCcC
Q 048635          471 FKSLYALNMSHNALTGS-IPSSFGNLKQIESLDLSMNNLSGKI---PAQLASLNFLSVLNLSY  529 (562)
Q Consensus       471 l~~L~~L~Ls~n~i~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~---p~~l~~l~~L~~L~l~~  529 (562)
                      +|+|+.|++++|+|... --..+..+.+|..|++.+|..+..-   -..+.-+++|++||-..
T Consensus        90 ~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen   90 APNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             CCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            68999999999998731 0123556777889999988876521   12355567777766443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.08  E-value=0.00048  Score=71.82  Aligned_cols=89  Identities=29%  Similarity=0.381  Sum_probs=39.3

Q ss_pred             CCCCCEEecCCc-cCccc-CCccCCCCCCCcEEeCCCC-CCCCCCCccccCCCcccccCCCCCCEEEccCcc-CCCCCCc
Q 048635           76 LTNLTYLNLSHC-GFTGE-IPTEISSLPRLVTLDLSSR-EPISGFSWRLGIPNFNFFQNLKELRELYLDNVD-LSGLGTE  151 (562)
Q Consensus        76 l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~  151 (562)
                      ++.|+.|.+..+ .+... .-.....+++|+.|+++++ .....    ...........+.+|+.|+++++. +++... 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l-  261 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITL----SPLLLLLLLSICRKLKSLDLSGCGLVTDIGL-  261 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCccccccc----chhHhhhhhhhcCCcCccchhhhhccCchhH-
Confidence            566666666655 23311 2233455666666666552 11000    000011123344556666666555 333322 


Q ss_pred             cccccC-CCCCCCEEecccCC
Q 048635          152 RCKALS-FLPNLQVLNLSSCL  171 (562)
Q Consensus       152 ~~~~l~-~l~~L~~L~l~~n~  171 (562)
                        ..+. .+++|++|.+.+|.
T Consensus       262 --~~l~~~c~~L~~L~l~~c~  280 (482)
T KOG1947|consen  262 --SALASRCPNLETLSLSNCS  280 (482)
T ss_pred             --HHHHhhCCCcceEccCCCC
Confidence              2222 25566666655554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.00  E-value=0.00056  Score=71.33  Aligned_cols=178  Identities=23%  Similarity=0.132  Sum_probs=77.1

Q ss_pred             CCCCcCEEECcCCc-ccccCCccCC-CCCCCCEEEcccCC-CCCcch-HHhhcCCCCCEEEccCcccceecCCCCCCCCC
Q 048635          349 RNCGLHILDLSGNQ-LQGVVPKSLA-NCNMLQVLDFRNNH-ISDNFP-CWLRNASSLQVLVLRSNNFSGHISYPRNNVSW  424 (562)
Q Consensus       349 ~~~~L~~L~L~~n~-l~~~~~~~l~-~l~~L~~L~L~~n~-l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~  424 (562)
                      .+.+|+.++++++. +++..-..+. .+++|++|.+.+|. +++..- .....++.|++|+++.|.......+......+
T Consensus       241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c  320 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNC  320 (482)
T ss_pred             hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhC
Confidence            33455666666555 4433222222 25666666666665 444222 22334666777776666543221112223334


Q ss_pred             CCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCc-ChhccCCCCC-----
Q 048635          425 PLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSI-PSSFGNLKQI-----  498 (562)
Q Consensus       425 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~-p~~l~~l~~L-----  498 (562)
                      ++++.+.+....--..+     ....+........ .......+..++.++.+.+.++.+.... ...+..++.|     
T Consensus       321 ~~l~~l~~~~~~~c~~l-----~~~~l~~~~~~~~-d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~  394 (482)
T KOG1947|consen  321 PNLRELKLLSLNGCPSL-----TDLSLSGLLTLTS-DDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLE  394 (482)
T ss_pred             cchhhhhhhhcCCCccH-----HHHHHHHhhccCc-hhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHH
Confidence            55544443322210000     0000000000000 0112223566778888888887744322 2334455544     


Q ss_pred             ---------CeeeCCCCccc-ccChhhhcC-CCCCCeEeCcCCcc
Q 048635          499 ---------ESLDLSMNNLS-GKIPAQLAS-LNFLSVLNLSYNNL  532 (562)
Q Consensus       499 ---------~~L~Ls~n~l~-~~~p~~l~~-l~~L~~L~l~~n~l  532 (562)
                               +.|+++.+... ...-..... +..++.+++.+++.
T Consensus       395 ~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  395 LRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV  439 (482)
T ss_pred             HHhccCCccceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence                     55555555433 122222222 44556666666543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.66  E-value=0.0044  Score=33.18  Aligned_cols=22  Identities=50%  Similarity=0.776  Sum_probs=15.9

Q ss_pred             CCCEEecCCccCcccCCccCCCC
Q 048635           78 NLTYLNLSHCGFTGEIPTEISSL  100 (562)
Q Consensus        78 ~L~~L~Ls~n~i~~~~~~~~~~l  100 (562)
                      +|++||+++|+++ .+|..|++|
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT-
T ss_pred             CccEEECCCCcCE-eCChhhcCC
Confidence            4788888888888 677666553

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.57  E-value=0.00013  Score=74.29  Aligned_cols=38  Identities=32%  Similarity=0.425  Sum_probs=18.5

Q ss_pred             CCCCEEeCcCCcCccCc----ChhccCCCCCCeeeCCCCccc
Q 048635          472 KSLYALNMSHNALTGSI----PSSFGNLKQIESLDLSMNNLS  509 (562)
Q Consensus       472 ~~L~~L~Ls~n~i~~~~----p~~l~~l~~L~~L~Ls~n~l~  509 (562)
                      ..++.++++.|.|++..    .+.+..++.++++.++.|.+.
T Consensus       262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            44555555555554322    233344455555555555554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.19  E-value=0.0073  Score=32.29  Aligned_cols=11  Identities=73%  Similarity=0.794  Sum_probs=4.1

Q ss_pred             CeeeCCCCccc
Q 048635          499 ESLDLSMNNLS  509 (562)
Q Consensus       499 ~~L~Ls~n~l~  509 (562)
                      ++|||++|+++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            33333333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.36  E-value=0.00027  Score=71.99  Aligned_cols=191  Identities=23%  Similarity=0.203  Sum_probs=113.0

Q ss_pred             CCCEEEccCCcCCCCC----CCCCcCCCCCcEEEccCCcccccCC----ccCCCC-CCCCeeeCcCCcccccCC-----C
Q 048635          245 YLQNLNLANTSFSGIL----PDPIGILKYLTRVDLRSCSFTGPIP----TSTTNL-TQLFHVDFSSNHFSGPIP-----S  310 (562)
Q Consensus       245 ~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~----~~l~~l-~~L~~L~l~~n~~~~~~~-----~  310 (562)
                      .+..+.+.+|.+....    ...+...+.|+.|++++|.+.+...    ..+... ..+++|++..|.++....     .
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            3778888888876432    2345667888999999998874322    223332 567778888887765322     1


Q ss_pred             CCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccC----CccCCCCCC-CCEEEcccC
Q 048635          311 FHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVV----PKSLANCNM-LQVLDFRNN  385 (562)
Q Consensus       311 ~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~----~~~l~~l~~-L~~L~L~~n  385 (562)
                      +.....++.++++.|.+.   ..+...+...++. .+....++++|.+.+|.++...    ...+...+. +.++++..|
T Consensus       168 L~~~~~l~~l~l~~n~l~---~~g~~~l~~~l~~-~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n  243 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLI---ELGLLVLSQALES-AASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASN  243 (478)
T ss_pred             HhcccchhHHHHHhcccc---hhhhHHHhhhhhh-hhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhc
Confidence            234677888888888764   1111111111111 1224556788888887766321    223444455 666888888


Q ss_pred             CCCCcc----hHHhhcC-CCCCEEEccCcccceec--CCCCCCCCCCCCCEEEcCCCcCCC
Q 048635          386 HISDNF----PCWLRNA-SSLQVLVLRSNNFSGHI--SYPRNNVSWPLLQIVDFASNKFGG  439 (562)
Q Consensus       386 ~l~~~~----~~~l~~l-~~L~~L~l~~n~l~~~~--~~~~~~~~~~~L~~L~l~~n~~~~  439 (562)
                      ++.+..    ...+..+ +.++.+++..|.++...  .+...+..++.++++.++.|.+..
T Consensus       244 ~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  244 KLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             CcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            776532    2233444 56677888888776432  124455566777888887777743

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.13  E-value=0.096  Score=25.88  Aligned_cols=13  Identities=46%  Similarity=0.710  Sum_probs=4.8

Q ss_pred             CCCeeeCCCCccc
Q 048635          497 QIESLDLSMNNLS  509 (562)
Q Consensus       497 ~L~~L~Ls~n~l~  509 (562)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3445555555444

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=90.59  E-value=0.083  Score=28.82  Aligned_cols=15  Identities=40%  Similarity=0.658  Sum_probs=6.4

Q ss_pred             CCCCeeeCCCCcccc
Q 048635          496 KQIESLDLSMNNLSG  510 (562)
Q Consensus       496 ~~L~~L~Ls~n~l~~  510 (562)
                      ++|++|+|++|+|++
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            345555555555443

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.17  E-value=0.29  Score=27.24  Aligned_cols=14  Identities=50%  Similarity=0.641  Sum_probs=7.1

Q ss_pred             CCCCeeeCCCCccc
Q 048635          496 KQIESLDLSMNNLS  509 (562)
Q Consensus       496 ~~L~~L~Ls~n~l~  509 (562)
                      ++|+.|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34555555555555

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.17  E-value=0.29  Score=27.24  Aligned_cols=14  Identities=50%  Similarity=0.641  Sum_probs=7.1

Q ss_pred             CCCCeeeCCCCccc
Q 048635          496 KQIESLDLSMNNLS  509 (562)
Q Consensus       496 ~~L~~L~Ls~n~l~  509 (562)
                      ++|+.|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34555555555555

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.14  E-value=0.049  Score=47.51  Aligned_cols=60  Identities=20%  Similarity=0.179  Sum_probs=26.8

Q ss_pred             CCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCc
Q 048635          377 LQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNK  436 (562)
Q Consensus       377 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~  436 (562)
                      ++.++-+++.|..+.-+.+..+++++.|.+.+|.-.+...+...-.-.++|+.|++++|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~  162 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP  162 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCC
Confidence            444555555544444444455555555555554422211111111133566666666554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.48  E-value=0.016  Score=51.49  Aligned_cols=88  Identities=15%  Similarity=0.192  Sum_probs=70.4

Q ss_pred             CCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCC
Q 048635          420 NNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIE  499 (562)
Q Consensus       420 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~  499 (562)
                      .+......+.||++.|++.                        ..-..++-++.+..|+++.|++. -.|..+.....+.
T Consensus        37 ei~~~kr~tvld~~s~r~v------------------------n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~   91 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV------------------------NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETV   91 (326)
T ss_pred             hhhccceeeeehhhhhHHH------------------------hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHH
Confidence            3445567788888888762                        22334556678888999999998 7888899999999


Q ss_pred             eeeCCCCcccccChhhhcCCCCCCeEeCcCCcce
Q 048635          500 SLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV  533 (562)
Q Consensus       500 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~  533 (562)
                      .+++..|..+ ..|..+...+.++++++.+|++.
T Consensus        92 ~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   92 NAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             HHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence            9999999988 78888899999999999998865

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.77  E-value=0.5  Score=26.26  Aligned_cols=22  Identities=32%  Similarity=0.573  Sum_probs=16.8

Q ss_pred             cCCCCEEeCcCCcCccCcChhc
Q 048635          471 FKSLYALNMSHNALTGSIPSSF  492 (562)
Q Consensus       471 l~~L~~L~Ls~n~i~~~~p~~l  492 (562)
                      +++|+.|+|++|+|....+..|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            4689999999999995444444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.77  E-value=0.5  Score=26.26  Aligned_cols=22  Identities=32%  Similarity=0.573  Sum_probs=16.8

Q ss_pred             cCCCCEEeCcCCcCccCcChhc
Q 048635          471 FKSLYALNMSHNALTGSIPSSF  492 (562)
Q Consensus       471 l~~L~~L~Ls~n~i~~~~p~~l  492 (562)
                      +++|+.|+|++|+|....+..|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            4689999999999995444444

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=87.57  E-value=2  Score=42.78  Aligned_cols=62  Identities=29%  Similarity=0.150  Sum_probs=31.3

Q ss_pred             CCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcc---cCChhhhCCCCccEEeccCCC
Q 048635          161 NLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRG---KYPEKILQVSTLETLDLSYNP  231 (562)
Q Consensus       161 ~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~---~~~~~l~~l~~L~~L~L~~~~  231 (562)
                      .+.+++++.|...+.+|..+..         ...-..++.++.+...+.-   ..+......++++..+++.|.
T Consensus       215 ~lteldls~n~~Kddip~~~n~---------~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng  279 (553)
T KOG4242|consen  215 WLTELDLSTNGGKDDIPRTLNK---------KAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNG  279 (553)
T ss_pred             cccccccccCCCCccchhHHHH---------hhhhhhhhcccccccccchhhcccccccccccccchhhhccCC
Confidence            4677777777776666544332         1222235566665555431   112222334556666666554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.67  E-value=0.081  Score=46.22  Aligned_cols=34  Identities=15%  Similarity=0.232  Sum_probs=19.6

Q ss_pred             CCEEEccCCcCcccCChhhhCCCCccEEeccCCC
Q 048635          198 LTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNP  231 (562)
Q Consensus       198 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~  231 (562)
                      ++.++-+++.|..+.-+.+..++.++.|.+.+|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck  136 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK  136 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence            5566666666555555555556666666665553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	562
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-17
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-17
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-08
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		2e-04
3ul7_A	278	Crystal Structure Of The Tv3 Mutant F63w Length = 2		2e-04
3ula_A	279	Crystal Structure Of The Tv3 Mutant F63w-Md-2-Erito		2e-04
3ul9_A	278	Structure Of The Tv3 Mutant M41e Length = 278		2e-04
2z62_A	276	Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 A		2e-04
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		2e-04
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		2e-04
3ul8_A	279	Crystal Structure Of The Tv3 Mutant V134l Length =		3e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 101/394 (25%), Positives = 152/394 (38%), Gaps = 89/394 (22%)
Query: 201 LDLSQCDLRGKYPEKILQVS-TLETLDLSYNPLLQGSLPNF---PKNSYLQNLNLANTSF 256
           LDLS  +  G+ PE +  +S +L TLDLS N      LPN    PKN+ LQ L L N  F
Sbjct: 345 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT-LQELYLQNNGF 403
Query: 257 SGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHEXXX 316
           +G +P  +     L  + L     +G IP+S  +L++L  +    N   G IP       
Sbjct: 404 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ------ 457
Query: 317 XXXXXXXXXXXXXXXXXXXXXXXXXXXDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNM 376
                                      ++++ +     ILD   N L G +P  L+NC  
Sbjct: 458 ---------------------------ELMYVKTLETLILDF--NDLTGEIPSGLSNCTN 488
Query: 377 LQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNK 436
           L  +   NN ++   P W+    +L +L L +N+FSG+I  P        L  +D  +N 
Sbjct: 489 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI--PAELGDCRSLIWLDLNTNL 546
Query: 437 FGGRL-------SQKCSTTL--GMRY-----QATNKRCRDQA---------TEEMGRFK- 472
           F G +       S K +     G RY         K C             +E++ R   
Sbjct: 547 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 606
Query: 473 -----------------------SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS 509
                                  S+  L+MS+N L+G IP   G++  +  L+L  N++S
Sbjct: 607 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 666
Query: 510 GKIPAQXXXXXXXXXXXXXXXXXVGQIPTAKHVL 543
           G IP +                  G+IP A   L
Sbjct: 667 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 700

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 101/394 (25%), Positives = 152/394 (38%), Gaps = 89/394 (22%)
Query: 201 LDLSQCDLRGKYPEKILQVS-TLETLDLSYNPLLQGSLPNF---PKNSYLQNLNLANTSF 256
           LDLS  +  G+ PE +  +S +L TLDLS N      LPN    PKN+ LQ L L N  F
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT-LQELYLQNNGF 406
Query: 257 SGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHEXXX 316
           +G +P  +     L  + L     +G IP+S  +L++L  +    N   G IP       
Sbjct: 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ------ 460
Query: 317 XXXXXXXXXXXXXXXXXXXXXXXXXXXDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNM 376
                                      ++++ +     ILD   N L G +P  L+NC  
Sbjct: 461 ---------------------------ELMYVKTLETLILDF--NDLTGEIPSGLSNCTN 491
Query: 377 LQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNK 436
           L  +   NN ++   P W+    +L +L L +N+FSG+I  P        L  +D  +N 
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI--PAELGDCRSLIWLDLNTNL 549
Query: 437 FGGRL-------SQKCSTTL--GMRY-----QATNKRCRDQA---------TEEMGRFK- 472
           F G +       S K +     G RY         K C             +E++ R   
Sbjct: 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609
Query: 473 -----------------------SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS 509
                                  S+  L+MS+N L+G IP   G++  +  L+L  N++S
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669
Query: 510 GKIPAQXXXXXXXXXXXXXXXXXVGQIPTAKHVL 543
           G IP +                  G+IP A   L
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 107/276 (38%), Gaps = 47/276 (17%)
Query: 247 QNLNLANTSFSGI-LPDPIGI------LKYLTRVDLRSCS-FTGPIPTSTTNLTQLFHVD 298
           Q   + N   SG+ LP P  I      L YL  + +   +   GPIP +   LTQL ++ 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107
Query: 299 FSSNHFSGPIPSFHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIIFPRNCGLHILDL 358
            +  + SG IP F                                         L  LD 
Sbjct: 108 ITHTNVSGAIPDFLSQIKT-----------------------------------LVTLDF 132
Query: 359 SGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSL-QVLVLRSNNFSGHISY 417
           S N L G +P S+++   L  + F  N IS   P    + S L   + +  N  +G I  
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192
Query: 418 PRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYAL 477
              N++   L  VD + N   G  S    +    +     K        ++G  K+L  L
Sbjct: 193 TFANLN---LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGL 249
Query: 478 NMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP 513
           ++ +N + G++P     LK + SL++S NNL G+IP
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 63/124 (50%), Gaps = 5/124 (4%)
Query: 180 LANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN 239
           L +L S+S F F      L  LDLS+C+++         +S L TL L+ NP+   +L  
Sbjct: 40  LRHLGSYSFFSFPE----LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95
Query: 240 FPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDL-RSCSFTGPIPTSTTNLTQLFHVD 298
           F   S LQ L    T+ + +   PIG LK L  +++  +   +  +P   +NLT L H+D
Sbjct: 96  FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155
Query: 299 FSSN 302
            SSN
Sbjct: 156 LSSN 159

>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w Length = 278

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 5/124 (4%)
Query: 180 LANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN 239
           L +L S+S F F      L  LDLS+C+++         +S L TL L+ NP+   +L  
Sbjct: 41  LRHLGSYSFFSFP----ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 96
Query: 240 FPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTG-PIPTSTTNLTQLFHVD 298
           F   S LQ L    T+ + +   PIG LK L  +++         +P   +NLT L H+D
Sbjct: 97  FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 156
Query: 299 FSSN 302
            SSN
Sbjct: 157 LSSN 160

>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran Complex Length = 279

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 5/124 (4%)
Query: 180 LANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN 239
           L +L S+S F F      L  LDLS+C+++         +S L TL L+ NP+   +L  
Sbjct: 42  LRHLGSYSFFSFP----ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 97
Query: 240 FPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTG-PIPTSTTNLTQLFHVD 298
           F   S LQ L    T+ + +   PIG LK L  +++         +P   +NLT L H+D
Sbjct: 98  FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 157
Query: 299 FSSN 302
            SSN
Sbjct: 158 LSSN 161

>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e Length = 278

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 63/124 (50%), Gaps = 5/124 (4%)
Query: 180 LANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN 239
           L +L S+S F F      L  LDLS+C+++         +S L TL L+ NP+   +L  
Sbjct: 41  LRHLGSYSFFSFP----ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 96
Query: 240 FPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDL-RSCSFTGPIPTSTTNLTQLFHVD 298
           F   S LQ L    T+ + +   PIG LK L  +++  +   +  +P   +NLT L H+D
Sbjct: 97  FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 156
Query: 299 FSSN 302
            SSN
Sbjct: 157 LSSN 160

>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 276

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 63/124 (50%), Gaps = 5/124 (4%)
Query: 180 LANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN 239
           L +L S+S F F      L  LDLS+C+++         +S L TL L+ NP+   +L  
Sbjct: 40  LRHLGSYSFFSFP----ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95
Query: 240 FPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDL-RSCSFTGPIPTSTTNLTQLFHVD 298
           F   S LQ L    T+ + +   PIG LK L  +++  +   +  +P   +NLT L H+D
Sbjct: 96  FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155
Query: 299 FSSN 302
            SSN
Sbjct: 156 LSSN 159

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 63/124 (50%), Gaps = 5/124 (4%)
Query: 180 LANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN 239
           L +L S+S F F      L  LDLS+C+++         +S L TL L+ NP+   +L  
Sbjct: 64  LRHLGSYSFFSFPE----LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 119
Query: 240 FPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDL-RSCSFTGPIPTSTTNLTQLFHVD 298
           F   S LQ L    T+ + +   PIG LK L  +++  +   +  +P   +NLT L H+D
Sbjct: 120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 179
Query: 299 FSSN 302
            SSN
Sbjct: 180 LSSN 183

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 201 LDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGIL 260
           LDLS+C+++         +S L TL L+ NP+   +L  F   S LQ L    T+ + + 
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116
Query: 261 PDPIGILKYLTRVDL-RSCSFTGPIPTSTTNLTQLFHVDFSSN 302
             PIG LK L  +++  +   +  +P   +NLT L H+D SSN
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l Length = 279

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 63/124 (50%), Gaps = 5/124 (4%)
Query: 180 LANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN 239
           L +L S+S F F      L  LDLS+C+++         +S L TL L+ NP+   +L  
Sbjct: 42  LRHLGSYSFFSFP----ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 97
Query: 240 FPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDL-RSCSFTGPIPTSTTNLTQLFHVD 298
           F   S LQ L    T+ + +   PIG LK L  +++  +   +  +P   +NLT L H+D
Sbjct: 98  FSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 157
Query: 299 FSSN 302
            SSN
Sbjct: 158 LSSN 161

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	562
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-99
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-89
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-83
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-80
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-79
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-60
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-40
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-61
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-50
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-47
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-46
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-45
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-41
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-58
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-48
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-31
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-53
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-42
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-42
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-29
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-16
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-52
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-41
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-51
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-49
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-36
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-32
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-28
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-47
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-47
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-41
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-37
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-44
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-39
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-39
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-37
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-34
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-38
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-35
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-24
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-28
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-05
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	6e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  316 bits (812), Expect = 4e-99
 Identities = 152/566 (26%), Positives = 222/566 (39%), Gaps = 83/566 (14%)

Query: 12  TPPAKMSQWSDSTNCCDWTGVDCDEAGHVIGLDLSAEPILIGRLENASGLFSLQYMQS-- 69
                +  WS + N C + GV C     V  +DLS++P+ +G    +S L SL  ++S  
Sbjct: 25  PDKNLLPDWSSNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLF 83

Query: 70  ----QF-----GLANLTNLTYLNLSHCGFTGEIPT--EISSLPRLVTLDLSSREPISGFS 118
                      G     +LT L+LS    +G + T   + S   L  L++SS    +   
Sbjct: 84  LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSS----NTLD 139

Query: 119 WRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINH 178
           +   +        L  L  L L    +SG              L+ L +S   + G ++ 
Sbjct: 140 FPGKVSGGL---KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD- 195

Query: 179 HLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLP 238
                        V+  +NL  LD+S  +     P  +   S L+ LD+S N  L G   
Sbjct: 196 -------------VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN-KLSGDFS 240

Query: 239 -NFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTS-TTNLTQLFH 296
                 + L+ LN+++  F G +P     LK L  + L    FTG IP   +     L  
Sbjct: 241 RAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTG 298

Query: 297 VDFSSNHFSGPIP-SFHESRNLNYLDLSSNNLNG--------------VLNLGRNNLNGT 341
           +D S NHF G +P  F     L  L LSSNN +G              VL+L  N  +G 
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358

Query: 342 LSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNM--LQVLDFRNNHISDNFPCWLRNAS 399
           L + +   +  L  LDLS N   G +  +L       LQ L  +NN  +   P  L N S
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418

Query: 400 SLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKR 459
            L  L L  N  SG I  P +  S   L+ +    N   G + Q                
Sbjct: 419 ELVSLHLSFNYLSGTI--PSSLGSLSKLRDLKLWLNMLEGEIPQ---------------- 460

Query: 460 CRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASL 519
                  E+   K+L  L +  N LTG IPS   N   +  + LS N L+G+IP  +  L
Sbjct: 461 -------ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513

Query: 520 NFLSVLNLSYNNLVGQIPTAKHVLPN 545
             L++L LS N+  G IP       +
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRS 539

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  290 bits (744), Expect = 4e-89
 Identities = 128/495 (25%), Positives = 192/495 (38%), Gaps = 78/495 (15%)

Query: 75  NLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKE 134
               LT L+LS   F G +P    S   L +L LSS    SG      +P  +    ++ 
Sbjct: 292 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN-FSGE-----LPM-DTLLKMRG 344

Query: 135 LRELYLDNVDLSG-----LGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQF 189
           L+ L L   + SG     L        +   +L  L+LSS    GPI  +L         
Sbjct: 345 LKVLDLSFNEFSGELPESLT-------NLSASLLTLDLSSNNFSGPILPNLCQN------ 391

Query: 190 FFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN-FPKNSYLQN 248
                   L  L L      GK P  +   S L +L LS+N  L G++P+     S L++
Sbjct: 392 ----PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN-YLSGTIPSSLGSLSKLRD 446

Query: 249 LNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPI 308
           L L      G +P  +  +K L  + L     TG IP+  +N T L  +  S+N  +G I
Sbjct: 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506

Query: 309 P-SFHESRNLNYLDLSSNNLNG-------------VLNLGRNNLNGTLSDIIFPRNCGLH 354
           P       NL  L LS+N+ +G              L+L  N  NGT+     P      
Sbjct: 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI-----PAAMFKQ 561

Query: 355 ILDLSGNQLQGVVPKSLANCNMLQVLDFRNN--HISDNFPCWLRNASSLQVLVLRSNNFS 412
              ++ N + G     + N  M +      N           L   S+     + S  + 
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621

Query: 413 GHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFK 472
           GH        +   +  +D + N   G +                        +E+G   
Sbjct: 622 GHT--SPTFDNNGSMMFLDMSYNMLSGYIP-----------------------KEIGSMP 656

Query: 473 SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 532
            L+ LN+ HN ++GSIP   G+L+ +  LDLS N L G+IP  +++L  L+ ++LS NNL
Sbjct: 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716

Query: 533 VGQIPTAKHVLPNFN 547
            G IP        F 
Sbjct: 717 SGPIPEMG-QFETFP 730

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  273 bits (701), Expect = 5e-83
 Identities = 125/484 (25%), Positives = 191/484 (39%), Gaps = 70/484 (14%)

Query: 74  ANLTNLTYLNLSHCGFTGEIPTEIS-SLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNL 132
             L +L YL+L+   FTGEIP  +S +   L  LDLS      G      +P F  F + 
Sbjct: 266 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH-FYG-----AVPPF--FGSC 317

Query: 133 KELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFV 192
             L  L L + + SG        L  +  L+VL+LS     G +   L NL +       
Sbjct: 318 SLLESLALSSNNFSGELPM--DTLLKMRGLKVLDLSFNEFSGELPESLTNLSA------- 368

Query: 193 ANLLNLTNLDLSQCDLRGKYPEKILQV--STLETLDLSYNPLLQGSLPNFPKN-SYLQNL 249
               +L  LDLS  +  G     + Q   +TL+ L L  N    G +P    N S L +L
Sbjct: 369 ----SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN-GFTGKIPPTLSNCSELVSL 423

Query: 250 NLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIP 309
           +L+    SG +P  +G L  L  + L      G IP     +  L  +    N  +G IP
Sbjct: 424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483

Query: 310 -SFHESRNLNYLDLSSNNLNG-------------VLNLGRNNLNGTLSDIIFPRNC-GLH 354
                  NLN++ LS+N L G             +L L  N+ +G +   +   +C  L 
Sbjct: 484 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG--DCRSLI 541

Query: 355 ILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGH 414
            LDL+ N   G +P ++   +         N I+     +++N    +      N     
Sbjct: 542 WLDLNTNLFNGTIPAAMFKQS----GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 597

Query: 415 ISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSL 474
                           +  S  +GG  S                              S+
Sbjct: 598 GIRSEQLNRLSTRNPCNITSRVYGGHTS-----------------------PTFDNNGSM 634

Query: 475 YALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVG 534
             L+MS+N L+G IP   G++  +  L+L  N++SG IP ++  L  L++L+LS N L G
Sbjct: 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694

Query: 535 QIPT 538
           +IP 
Sbjct: 695 RIPQ 698

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  265 bits (679), Expect = 8e-80
 Identities = 110/484 (22%), Positives = 177/484 (36%), Gaps = 76/484 (15%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNL 132
           L + + L +L++S    +G+    IS+   L  L++SS +   G      IP       L
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ-FVG-----PIPPLP----L 268

Query: 133 KELRELYLDNVDLSG-LGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFF 191
           K L+ L L     +G +             L  L+LS     G +     +         
Sbjct: 269 KSLQYLSLAENKFTGEIPDFLS---GACDTLTGLDLSGNHFYGAVPPFFGSCS------- 318

Query: 192 VANLLNLTNLDLSQCDLRGKYP-EKILQVSTLETLDLSYNPLLQGSLPNFPKN--SYLQN 248
                 L +L LS  +  G+ P + +L++  L+ LDLS+N    G LP    N  + L  
Sbjct: 319 -----LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN-EFSGELPESLTNLSASLLT 372

Query: 249 LNLANTSFSGILPDPIG--ILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSG 306
           L+L++ +FSG +   +       L  + L++  FTG IP + +N ++L  +  S N+ SG
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432

Query: 307 PIP-SFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQG 365
            IP S      L  L L  N L G +                     L  L L  N L G
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQE------------LMYVKTLETLILDFNDLTG 480

Query: 366 VVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWP 425
            +P  L+NC  L  +   NN ++   P W+    +L +L L +N+FSG+I  P       
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI--PAELGDCR 538

Query: 426 LLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALT 485
            L  +D  +N F G +        G                            ++ N + 
Sbjct: 539 SLIWLDLNTNLFNGTIPAAMFKQSGK---------------------------IAANFIA 571

Query: 486 GSIPSSFGNLKQIESLDLSMN--NLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKHVL 543
           G       N    +    + N     G    QL  L+  +  N++     G         
Sbjct: 572 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631

Query: 544 PNFN 547
            +  
Sbjct: 632 GSMM 635

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  264 bits (677), Expect = 2e-79
 Identities = 118/513 (23%), Positives = 193/513 (37%), Gaps = 84/513 (16%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEI---SSLPRLVTLDLSSREPISGFSWRLGIPNFNFF 129
              L +L  L+LS    +G              L  L +S  + ISG      +      
Sbjct: 147 GLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK-ISG-----DVD----V 196

Query: 130 QNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQF 189
                L  L + + + S         L     LQ L++S   L G  +  ++        
Sbjct: 197 SRCVNLEFLDVSSNNFST----GIPFLGDCSALQHLDISGNKLSGDFSRAISTCT----- 247

Query: 190 FFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN--FPKNSYLQ 247
                   L  L++S     G  P   L   +L+ L L+ N    G +P+        L 
Sbjct: 248 -------ELKLLNISSNQFVGPIPPLPL--KSLQYLSLAEN-KFTGEIPDFLSGACDTLT 297

Query: 248 NLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTST-TNLTQLFHVDFSSNHFSG 306
            L+L+   F G +P   G    L  + L S +F+G +P  T   +  L  +D S N FSG
Sbjct: 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357

Query: 307 PIPS--FHESRNLNYLDLSSNNLNG---------------VLNLGRNNLNGTLSDIIFPR 349
            +P    + S +L  LDLSSNN +G                L L  N   G +   +   
Sbjct: 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS-- 415

Query: 350 NCG-LHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRS 408
           NC  L  L LS N L G +P SL + + L+ L    N +    P  L    +L+ L+L  
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475

Query: 409 NNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEM 468
           N+ +G I  P    +   L  +  ++N+  G +                        + +
Sbjct: 476 NDLTGEI--PSGLSNCTNLNWISLSNNRLTGEIP-----------------------KWI 510

Query: 469 GRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLS 528
           GR ++L  L +S+N+ +G+IP+  G+ + +  LDL+ N  +G IPA +   +      ++
Sbjct: 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IA 566

Query: 529 YNNLVGQIPTAKHVLPNFNLHRRQLQAMKLIGS 561
            N + G+                    ++  G 
Sbjct: 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  210 bits (538), Expect = 9e-60
 Identities = 94/376 (25%), Positives = 157/376 (41%), Gaps = 52/376 (13%)

Query: 197 NLTNLDLSQCDLRGKY---PEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLAN 253
            +T++DLS   L   +      +L ++ LE+L LS +  + GS+  F  ++ L +L+L+ 
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNS-HINGSVSGFKCSASLTSLDLSR 109

Query: 254 TSFSGILPDP--IGILKYLTRVDLRSCSFTGPIPTST-TNLTQLFHVDFSSNHFSGPIPS 310
            S SG +     +G    L  +++ S +   P   S    L  L  +D S+N  SG    
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169

Query: 311 ----FHESRNLNYLDLSSNNLNG-----------VLNLGRNNLNGTLSDIIFPRNCGLHI 355
                     L +L +S N ++G            L++  NN +  +  +       L  
Sbjct: 170 GWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFL--GDCSALQH 227

Query: 356 LDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHI 415
           LD+SGN+L G   ++++ C  L++L+  +N      P       SLQ L L  N F+G I
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEI 285

Query: 416 SYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLY 475
                + +   L  +D + N F G +                           G    L 
Sbjct: 286 P-DFLSGACDTLTGLDLSGNHFYGAVP-----------------------PFFGSCSLLE 321

Query: 476 ALNMSHNALTGSIP-SSFGNLKQIESLDLSMNNLSGKIPAQLASLNF-LSVLNLSYNNLV 533
           +L +S N  +G +P  +   ++ ++ LDLS N  SG++P  L +L+  L  L+LS NN  
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381

Query: 534 GQIPTAKHVLPNFNLH 549
           G I       P   L 
Sbjct: 382 GPILPNLCQNPKNTLQ 397

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  156 bits (396), Expect = 1e-40
 Identities = 85/348 (24%), Positives = 136/348 (39%), Gaps = 46/348 (13%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNL 132
           L+N + L  L+LS    +G IP+ + SL +L  L L     + G      IP       +
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM-LEG-----EIPQE--LMYV 465

Query: 133 KELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFV 192
           K L  L LD  DL+G        LS   NL  ++LS+  L G I   +  L         
Sbjct: 466 KTLETLILDFNDLTGEIPS---GLSNCTNLNWISLSNNRLTGEIPKWIGRLE-------- 514

Query: 193 ANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLA 252
               NL  L LS     G  P ++    +L  LDL+ N L  G++P      + Q+  +A
Sbjct: 515 ----NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN-LFNGTIP---AAMFKQSGKIA 566

Query: 253 NTSFSGILPDPIGILKYLTRVDLRS--CSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPS 310
               +G     I                 F G        L+     + +S  + G    
Sbjct: 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626

Query: 311 FHES-RNLNYLDLSSNNLNGVL--NLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVV 367
             ++  ++ +LD+S N L+G +   +G  ++              L IL+L  N + G +
Sbjct: 627 TFDNNGSMMFLDMSYNMLSGYIPKEIG--SMPY------------LFILNLGHNDISGSI 672

Query: 368 PKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHI 415
           P  + +   L +LD  +N +    P  +   + L  + L +NN SG I
Sbjct: 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  104 bits (262), Expect = 1e-23
 Identities = 61/254 (24%), Positives = 99/254 (38%), Gaps = 27/254 (10%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNL 132
           +  L NL  L LS+  F+G IP E+     L+ LDL++    +G      IP    F+  
Sbjct: 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL-FNGT-----IPA-AMFKQS 562

Query: 133 KELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFV 192
            ++   ++       +          +        +     G  +  L  L +       
Sbjct: 563 GKIAANFIAGKRYVYIKN------DGMKKECHGAGNLLEFQGIRSEQLNRLST------- 609

Query: 193 ANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN-FPKNSYLQNLNL 251
                    +++     G          ++  LD+SYN +L G +P       YL  LNL
Sbjct: 610 -----RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN-MLSGYIPKEIGSMPYLFILNL 663

Query: 252 ANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSF 311
            +   SG +PD +G L+ L  +DL S    G IP + + LT L  +D S+N+ SGPIP  
Sbjct: 664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723

Query: 312 HESRNLNYLDLSSN 325
            +          +N
Sbjct: 724 GQFETFPPAKFLNN 737

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.1 bits (175), Expect = 4e-13
 Identities = 28/154 (18%), Positives = 56/154 (36%), Gaps = 28/154 (18%)

Query: 397 NASSLQVLVLRSNNFSGHI-SYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQA 455
               +  + L S   +    +   + +S   L+ +  +++   G +S             
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS------------- 94

Query: 456 TNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPS--SFGNLKQIESLDLSMNNLSGKIP 513
                            SL +L++S N+L+G + +  S G+   ++ L++S N L     
Sbjct: 95  -----------GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143

Query: 514 AQ-LASLNFLSVLNLSYNNLVGQIPTAKHVLPNF 546
                 LN L VL+LS N++ G       +    
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 177

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.5 bits (150), Expect = 5e-10
 Identities = 44/187 (23%), Positives = 69/187 (36%), Gaps = 32/187 (17%)

Query: 73  LANLTNLTYLNLS--HCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQ 130
           + N       + +     F G    +++ L      +++SR    G            F 
Sbjct: 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV-YGG-----HTS--PTFD 629

Query: 131 NLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFF 190
           N   +  L +    LSG      K +  +P L +LNL    + G I   + +LR      
Sbjct: 630 NNGSMMFLDMSYNMLSG---YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR------ 680

Query: 191 FVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLP------NFPKNS 244
                  L  LDLS   L G+ P+ +  ++ L  +DLS N  L G +P       FP   
Sbjct: 681 ------GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN-NLSGPIPEMGQFETFPPAK 733

Query: 245 YLQNLNL 251
           +L N  L
Sbjct: 734 FLNNPGL 740

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  212 bits (541), Expect = 9e-61
 Identities = 94/506 (18%), Positives = 153/506 (30%), Gaps = 58/506 (11%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNL 132
                NL  L+LSH G +         L  L  L LS+ + I                  
Sbjct: 117 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQAL-----KSEELDIFAN 170

Query: 133 KELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFV 192
             L++L L +  +             +  L  L L++  L   +                
Sbjct: 171 SSLKKLELSSNQIKEFSPG---CFHAIGRLFGLFLNNVQLGPSLTEK---------LCLE 218

Query: 193 ANLLNLTNLDLSQCDLRGKYPE--KILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLN 250
               ++ NL LS   L          L+ + L  LDLSYN L      +F     L+   
Sbjct: 219 LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 278

Query: 251 LANTSFSGILPDPIGILKYLTRVDLRS---------CSFTGPIPTSTTNLTQLFHVDFSS 301
           L   +   +    +  L  +  ++L+           S       S   L  L H++   
Sbjct: 279 LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338

Query: 302 NHFSGPIP-SFHESRNLNYLDLSSNNLNG-----------------VLNLGRNNLNGTLS 343
           N   G     F    NL YL LS++  +                  +LNL +N ++   S
Sbjct: 339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398

Query: 344 DIIFPRNCGLHILDLSGNQLQGVVPKS-LANCNMLQVLDFRNNHISDNFPCWLRNASSLQ 402
           D  F     L +LDL  N++   +          +  +    N              SLQ
Sbjct: 399 DA-FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ 457

Query: 403 VLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRY--------- 453
            L+LR        S P        L I+D ++N               +           
Sbjct: 458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517

Query: 454 QATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP 513
           +             +     L+ LN+  N         F +L +++ +DL +NNL+    
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577

Query: 514 AQLASLNFLSVLNLSYNNLVGQIPTA 539
           +   +   L  LNL  N +       
Sbjct: 578 SVFNNQVSLKSLNLQKNLITSVEKKV 603

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  183 bits (466), Expect = 2e-50
 Identities = 93/478 (19%), Positives = 161/478 (33%), Gaps = 76/478 (15%)

Query: 77  TNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELR 136
            +    + SH   T ++P ++     +  L+L+          +L       F    +L 
Sbjct: 4   VSHEVADCSHLKLT-QVPDDL--PTNITVLNLTHN--------QLRRLPAANFTRYSQLT 52

Query: 137 ELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLL 196
            L +    +S L  E       LP L+VLNL    L    +   A               
Sbjct: 53  SLDVGFNTISKLEPE---LCQKLPMLKVLNLQHNELSQLSDKTFAFCT------------ 97

Query: 197 NLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSF 256
           NLT L L    ++       ++   L TLDLS+N L    L    +   LQ L L+N   
Sbjct: 98  NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI 157

Query: 257 SGILPDPIGILK--YLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPS---- 310
             +  + + I     L +++L S       P     + +LF +  ++      +      
Sbjct: 158 QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCL 217

Query: 311 FHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKS 370
              + ++  L LS++ L+   N     L  T           L +LDLS N L  V   S
Sbjct: 218 ELANTSIRNLSLSNSQLSTTSNTTFLGLKWT----------NLTMLDLSYNNLNVVGNDS 267

Query: 371 LANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPL---- 426
            A    L+      N+I   F   L    +++ L L+ +     IS              
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327

Query: 427 ---LQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNA 483
              L+ ++   N   G  S                              +L  L++S++ 
Sbjct: 328 LKCLEHLNMEDNDIPGIKSN-----------------------MFTGLINLKYLSLSNSF 364

Query: 484 LTGS--IPSSFGNLKQ--IESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIP 537
            +       +F +L    +  L+L+ N +S       + L  L VL+L  N +  ++ 
Sbjct: 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  174 bits (444), Expect = 2e-47
 Identities = 79/413 (19%), Positives = 135/413 (32%), Gaps = 52/413 (12%)

Query: 157 SFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKI 216
               N+ VLNL+   L      +                  LT+LD+    +    PE  
Sbjct: 22  DLPTNITVLNLTHNQLRRLPAANFTRYS------------QLTSLDVGFNTISKLEPELC 69

Query: 217 LQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLR 276
            ++  L+ L+L +N L Q S   F   + L  L+L + S   I  +P    K L  +DL 
Sbjct: 70  QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 129

Query: 277 SCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIP---SFHESRNLNYLDLSSNNLNGV--- 330
               +     +   L  L  +  S+N              + +L  L+LSSN +      
Sbjct: 130 HNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG 189

Query: 331 ----------LNLGRNNLNGTLSDIIFPRNCGLHI--LDLSGNQLQGVVPKSLANCNM-- 376
                     L L    L  +L++ +        I  L LS +QL      +        
Sbjct: 190 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN 249

Query: 377 LQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNK 436
           L +LD   N+++            L+   L  NN      +  +      ++ ++   + 
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH--LFSHSLHGLFNVRYLNLKRSF 307

Query: 437 FGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLK 496
               +S      +                      K L  LNM  N + G   + F  L 
Sbjct: 308 TKQSISLASLPKID--------------DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI 353

Query: 497 QIESLDLSMNNLSGKIPAQLA----SLNFLSVLNLSYNNLVGQIPTAKHVLPN 545
            ++ L LS +  S +          + + L +LNL+ N +      A   L +
Sbjct: 354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  171 bits (436), Expect = 3e-46
 Identities = 101/492 (20%), Positives = 166/492 (33%), Gaps = 66/492 (13%)

Query: 62  FSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSL--PRLVTLDLSSREPISGFSW 119
                 +        T++  L+LS+   +    T    L    L  LDLS          
Sbjct: 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN-------- 258

Query: 120 RLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHH 179
            L +   + F  L +L   +L+  ++  L +    +L  L N++ LNL        I+  
Sbjct: 259 NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS---HSLHGLFNVRYLNLKRSFTKQSISL- 314

Query: 180 LANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN 239
            A+L     F F   L  L +L++   D+ G        +  L+ L LS +     +L N
Sbjct: 315 -ASLPKIDDFSF-QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN 372

Query: 240 ----FPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTST-TNLTQL 294
                  +S L  LNL     S I  D    L +L  +DL        +       L  +
Sbjct: 373 ETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI 432

Query: 295 FHVDFSSNHFSGPIP-SFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGL 353
           F +  S N +      SF    +L  L L    L  V            S   F     L
Sbjct: 433 FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV----------DSSPSPFQPLRNL 482

Query: 354 HILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISD--------NFPCWLRNASSLQVLV 405
            ILDLS N +  +    L     L++LD ++N+++             +L+  S L +L 
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542

Query: 406 LRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQAT 465
           L SN F         ++    L+I+D   N      +                       
Sbjct: 543 LESNGFDEIPVEVFKDLFE--LKIIDLGLNNLNTLPA----------------------- 577

Query: 466 EEMGRFKSLYALNMSHNALTGSIPSSFG-NLKQIESLDLSMNNLSGKIPAQLASLNFLSV 524
                  SL +LN+  N +T      FG   + +  LD+  N       +    +N+++ 
Sbjct: 578 SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINE 637

Query: 525 LNLSYNNLVGQI 536
            + +   L    
Sbjct: 638 THTNIPELSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  168 bits (427), Expect = 4e-45
 Identities = 88/483 (18%), Positives = 142/483 (29%), Gaps = 112/483 (23%)

Query: 71  FGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQ 130
           F     TNLT L+LS+           + LP+L    L            +     +   
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN--------NIQHLFSHSLH 293

Query: 131 NLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFF 190
            L  +R L L                    +    ++S   L    +     L+      
Sbjct: 294 GLFNVRYLNLKR------------------SFTKQSISLASLPKIDDFSFQWLK------ 329

Query: 191 FVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN----FPKNSYL 246
                  L +L++   D+ G        +  L+ L LS +     +L N       +S L
Sbjct: 330 ------CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383

Query: 247 QNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTST-TNLTQLFHVDFSSNHFS 305
             LNL     S I  D    L +L  +DL        +       L  +F +  S N + 
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443

Query: 306 GPIP-SFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQ 364
                SF    +L  L L    L  V            S   F     L ILDLS N + 
Sbjct: 444 QLTRNSFALVPSLQRLMLRRVALKNV----------DSSPSPFQPLRNLTILDLSNNNIA 493

Query: 365 GVVPKSLANCNMLQVLDFRNNHISD--------NFPCWLRNASSLQVLVLRSNNFSGHIS 416
            +    L     L++LD ++N+++             +L+  S L +L L SN F     
Sbjct: 494 NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553

Query: 417 YPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYA 476
                                                            E       L  
Sbjct: 554 -------------------------------------------------EVFKDLFELKI 564

Query: 477 LNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLA-SLNFLSVLNLSYNNLVGQ 535
           +++  N L     S F N   ++SL+L  N ++         +   L+ L++ +N     
Sbjct: 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624

Query: 536 IPT 538
             +
Sbjct: 625 CES 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  156 bits (397), Expect = 5e-41
 Identities = 82/467 (17%), Positives = 142/467 (30%), Gaps = 76/467 (16%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSW-RLGIPNFNFFQN 131
            A L  L Y  L +          +  L  +  L+L         S   L   +   FQ 
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327

Query: 132 LKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLL--LGPINHHLANLRSHSQF 189
           LK L  L +++ D+ G+ +      + L NL+ L+LS+         N    +L      
Sbjct: 328 LKCLEHLNMEDNDIPGIKSN---MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP-- 382

Query: 190 FFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN-FPKNSYLQN 248
                   L  L+L++  +     +    +  LE LDL  N + Q      +     +  
Sbjct: 383 --------LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFE 434

Query: 249 LNLANTSFSGILPDPIGILKYLTRVDLRSCSFTG--PIPTSTTNLTQLFHVDFSSNHFSG 306
           + L+   +  +  +   ++  L R+ LR  +       P+    L  L  +D S+N+ + 
Sbjct: 435 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494

Query: 307 PIPS-FHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQG 365
                      L  LDL  NNL  +      + N             LHIL+L  N    
Sbjct: 495 INDDMLEGLEKLEILDLQHNNLARL----WKHANPGGPIYFLKGLSHLHILNLESNGFDE 550

Query: 366 VVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWP 425
           +  +   +   L+++D   N+++        N  SL+ L L+ N  +             
Sbjct: 551 IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK--------- 601

Query: 426 LLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALT 485
                      FG                                  +L  L+M  N   
Sbjct: 602 ---------KVFGPAFR------------------------------NLTELDMRFNPFD 622

Query: 486 GSIPSSFGNLKQIESLDLSMNNLSGKI----PAQLASLNFLSVLNLS 528
            +  S    +  I     ++  LS       P              S
Sbjct: 623 CTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSS 669

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  117 bits (295), Expect = 6e-28
 Identities = 53/312 (16%), Positives = 91/312 (29%), Gaps = 66/312 (21%)

Query: 243 NSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSN 302
               +  + ++   + +   P  +   +T ++L           + T  +QL  +D   N
Sbjct: 3   TVSHEVADCSHLKLTQV---PDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59

Query: 303 HFSGPIP-SFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGN 361
             S   P    +   L  L+L  N L+             LSD  F     L  L L  N
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQ------------LSDKTFAFCTNLTELHLMSN 107

Query: 362 QLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNN 421
            +Q +          L  LD  +N +S           +LQ L+L +N      S   + 
Sbjct: 108 SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI 167

Query: 422 VSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSH 481
            +   L+                                                L +S 
Sbjct: 168 FANSSLKK-----------------------------------------------LELSS 180

Query: 482 NALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLA---SLNFLSVLNLSYNNLVGQIPT 538
           N +    P  F  + ++  L L+   L   +  +L    +   +  L+LS + L     T
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240

Query: 539 AKHVLPNFNLHR 550
               L   NL  
Sbjct: 241 TFLGLKWTNLTM 252

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  202 bits (517), Expect = 9e-58
 Identities = 79/601 (13%), Positives = 187/601 (31%), Gaps = 101/601 (16%)

Query: 16  KMSQWSDSTNCCDWT---GVDCDEAGHVIGLDLS------AEPILIGRLENASGLF---- 62
             + W+ +     W    GV  +  G V GL L         P  IG+L     L     
Sbjct: 56  PGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSH 115

Query: 63  SLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLG 122
             +  +  FG   ++                 T +   PR    DL     I+    +  
Sbjct: 116 GEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDC-INSDPQQKS 174

Query: 123 IPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLAN 182
           I   +      +  ++   + +++ +     KA+  L  L+   + +   +         
Sbjct: 175 IKKSSR--ITLKDTQIGQLSNNITFV----SKAVMRLTKLRQFYMGNSPFVAENICEAWE 228

Query: 183 LRSHSQFFF-------VANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQG 235
             +               NL +LT++++  C    K P  +  +  ++ ++++ N  + G
Sbjct: 229 NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG 288

Query: 236 --------SLPNFPKNSYLQNLNLANTSF-SGILPDPIGILKYLTRVDLRSCSFTGPIPT 286
                   +L + P    +Q + +   +  +  +   +  +K L  ++       G +P 
Sbjct: 289 EQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP- 347

Query: 287 STTNLTQLFHVDFSSNHFSGPIPS-FHESRNLNYLDLSSNNLNGV--------------L 331
           +  +  +L  ++ + N  +    +    +  +  L  + N L  +              +
Sbjct: 348 AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAI 407

Query: 332 NLGRNNLNGTLSDIIFP------RNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNN 385
           +   N +         P      +   +  ++LS NQ+     +  +  + L  ++   N
Sbjct: 408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN 467

Query: 386 HISD-------NFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFG 438
            +++       +     +N   L  + LR N  +  +S      + P L  +D + N F 
Sbjct: 468 MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSF- 525

Query: 439 GRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSH------NALTGSIPSSF 492
                   +                   +     +L    + +      N      P   
Sbjct: 526 --------SKF---------------PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI 562

Query: 493 GNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKHVLPNFNLHRRQ 552
                +  L +  N++   +  ++     +SVL++  N  +    +  +V P        
Sbjct: 563 TLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLS--YVCPYIEAGMYM 617

Query: 553 L 553
           L
Sbjct: 618 L 618

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  176 bits (448), Expect = 4e-48
 Identities = 74/482 (15%), Positives = 145/482 (30%), Gaps = 82/482 (17%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNL 132
           +  LT L    + +  F  E   E               E +              + NL
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK-------------WDNL 248

Query: 133 KELRELYLDNVDLSG-LGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFF 191
           K+L ++ + N      L T     L  LP +Q++N++    +                  
Sbjct: 249 KDLTDVEVYNCPNLTKLPTF----LKALPEMQLINVACNRGISGEQ----LKDDWQALAD 300

Query: 192 VANLLNLTNLDLSQCDLR-GKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLN 250
                 +  + +   +L+       + ++  L  L+  YN  L+G LP F     L +LN
Sbjct: 301 APVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN-QLEGKLPAFGSEIKLASLN 359

Query: 251 LANTSFSGILPDPIGILKYLTRVDLRSCSFTG-PIPTSTTNLTQLFHVDFSSNHFSGPI- 308
           LA    + I  +  G  + +  +          P      +++ +  +DFS N       
Sbjct: 360 LAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419

Query: 309 -------PSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGN 361
                  P+  +  N++ ++LS+N ++       +  +             L  ++L GN
Sbjct: 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP------------LSSINLMGN 467

Query: 362 QLQGV-------VPKSLANCNMLQVLDFRNNHISDNFPCW-LRNASSLQVLVLRSNNFSG 413
            L  +         ++  N  +L  +D R N ++     +       L  + L  N+FS 
Sbjct: 468 MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK 527

Query: 414 ---HISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGR 470
                        + +    D   N+                             E +  
Sbjct: 528 FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP-----------------------EGITL 564

Query: 471 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYN 530
             SL  L +  N +   +         I  LD+  N       + +       +  L Y+
Sbjct: 565 CPSLTQLQIGSNDIR-KVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYD 621

Query: 531 NL 532
             
Sbjct: 622 KT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  128 bits (324), Expect = 1e-31
 Identities = 58/336 (17%), Positives = 112/336 (33%), Gaps = 47/336 (13%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNL 132
           L  +  L  L   +    G++P    S  +L +L+L+  + I+       IP  NF    
Sbjct: 326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ-ITE------IPA-NFCGFT 376

Query: 133 KELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFV 192
           +++  L   +  L  +          +  +  ++ S   +      +   L         
Sbjct: 377 EQVENLSFAHNKLKYIPNIFD--AKSVSVMSAIDFSYNEIGSVDGKNFDPLDP-----TP 429

Query: 193 ANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPL-------LQGSLPNFPKNSY 245
              +N+++++LS   +     E     S L +++L  N L       L+    NF     
Sbjct: 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489

Query: 246 LQNLNLANTSFSGILPD-PIGILKYLTRVDLRSCSFTGPIPTSTTNLTQL------FHVD 298
           L +++L     + +  D     L YL  +DL   SF+   PT   N + L         D
Sbjct: 490 LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRD 548

Query: 299 FSSNHFSGPIP-SFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILD 357
              N      P       +L  L + SN++              +++ I P    + +LD
Sbjct: 549 AQGNRTLREWPEGITLCPSLTQLQIGSNDIR------------KVNEKITPN---ISVLD 593

Query: 358 LSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPC 393
           +  N    +    +       +     +   D   C
Sbjct: 594 IKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGC 629

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 98.2 bits (245), Expect = 9e-22
 Identities = 44/275 (16%), Positives = 79/275 (28%), Gaps = 22/275 (8%)

Query: 73  LANLTNLTYLNLSHCGFTGEIP--TEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQ 130
                 +  L+ +H      IP   +  S+  +  +D S    I     +   P      
Sbjct: 373 CGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSY-NEIGSVDGKNFDPLDPTPF 430

Query: 131 NLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFF 190
               +  + L N  +S    E     S    L  +NL   +L     + L +   +    
Sbjct: 431 KGINVSSINLSNNQISKFPKE---LFSTGSPLSSINLMGNMLTEIPKNSLKDENEN---- 483

Query: 191 FVANLLNLTNLDLSQCDLRGKYPE-KILQVSTLETLDLSYN-----PLLQGSLPNFPKNS 244
              N   LT++DL    L     + +   +  L  +DLSYN     P    +        
Sbjct: 484 -FKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFG 542

Query: 245 YLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHF 304
                +          P+ I +   LT++ + S          T N++ L   D   N  
Sbjct: 543 IRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVL---DIKDNPN 599

Query: 305 SGPIPS-FHESRNLNYLDLSSNNLNGVLNLGRNNL 338
                S            L  +    +      ++
Sbjct: 600 ISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDI 634

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.0 bits (138), Expect = 9e-09
 Identities = 11/99 (11%), Positives = 29/99 (29%), Gaps = 4/99 (4%)

Query: 467 EMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG----KIPAQLASLNFL 522
            +     +  L++     +G +P + G L ++E L L  +          P  +++    
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 523 SVLNLSYNNLVGQIPTAKHVLPNFNLHRRQLQAMKLIGS 561
                   +               +L +  + +     S
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKS 174

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 2/87 (2%)

Query: 478 NMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIP 537
           N   +        S  +  ++  L L     SG++P  +  L  L VL L  +       
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 538 TA--KHVLPNFNLHRRQLQAMKLIGSS 562
               K +  N +  ++Q   M    + 
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTF 149

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  189 bits (483), Expect = 3e-53
 Identities = 92/510 (18%), Positives = 157/510 (30%), Gaps = 63/510 (12%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLS----SREPISGFSW--------- 119
             +   L  L+LS C           SL  L TL L+        +  FS          
Sbjct: 48  FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107

Query: 120 ---RLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPI 176
               L         +LK L+EL + +  +     +  +  S L NL+ L+LSS  +    
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEHLDLSSNKIQSIY 165

Query: 177 NHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPL---- 232
              L  L            L   +LDLS   +         +   L  L L  N      
Sbjct: 166 CTDLRVLHQMP--------LLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNV 216

Query: 233 LQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCS------FTGPIPT 286
           ++  +         + +     +   +       L+ L  + +          +   I  
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID 276

Query: 287 STTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGV----------LNLGRN 336
               LT +      S      +  F  +    +L+L +                L    N
Sbjct: 277 LFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSN 335

Query: 337 NLNGTLSDIIFPRNCGLHILDLSGNQLQ--GVVPKSLANCNMLQVLDFRNNHISDNFPCW 394
                 S++  P    L  LDLS N L   G   +S      L+ LD   N +       
Sbjct: 336 KGGNAFSEVDLPS---LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSN 391

Query: 395 LRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCS-----TTL 449
                 L+ L  + +N    +S     +S   L  +D +        +   +       L
Sbjct: 392 FLGLEQLEHLDFQHSNLKQ-MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450

Query: 450 GMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS 509
            M     N    +   +     ++L  L++S   L    P++F +L  ++ L++S NN  
Sbjct: 451 KMAG---NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507

Query: 510 GKIPAQLASLNFLSVLNLSYNNLVGQIPTA 539
                    LN L VL+ S N+++      
Sbjct: 508 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 537

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  158 bits (402), Expect = 5e-42
 Identities = 99/494 (20%), Positives = 164/494 (33%), Gaps = 81/494 (16%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRL----VTLDLSSREPISGFSWRLGIPNFNF 128
            +NLTNL +L+LS         T++  L ++    ++LDLS           +       
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN--------PMNFIQPGA 196

Query: 129 FQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQ 188
           F+ ++ L +L L N   S    + C  +  L  L+V  L         N          +
Sbjct: 197 FKEIR-LHKLTLRNNFDSLNVMKTC--IQGLAGLEVHRLVLGEFRNEGN---------LE 244

Query: 189 FFFVANLLNLTNLDLSQCDLR------GKYPEKILQVSTLETLDLSYNPLLQGSLPNFPK 242
            F  + L  L NL + +  L           +    ++ + +  L    + +  + +F  
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSY 302

Query: 243 NSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSN 302
           N   Q+L L N  F       +  LK LT    +     G    S  +L  L  +D S N
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK-----GGNAFSEVDLPSLEFLDLSRN 357

Query: 303 H--FSGPIP-SFHESRNLNYLDLSSNNLNGV------------LNLGRNNLNGTLSDIIF 347
              F G    S   + +L YLDLS N +  +            L+   +NL       +F
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417

Query: 348 PRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNF-PCWLRNASSLQVLVL 406
                L  LD+S    +          + L+VL    N   +NF P       +L  L L
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

Query: 407 RSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATE 466
                        N++S   LQ+++ + N F                           T 
Sbjct: 478 SQCQLEQLSPTAFNSLSS--LQVLNMSHNNF-----------------------FSLDTF 512

Query: 467 EMGRFKSLYALNMSHNALTGSIPSSFGNL-KQIESLDLSMNNLSGKIPAQ--LASLNFLS 523
                 SL  L+ S N +  S      +    +  L+L+ N+ +     Q  L  +    
Sbjct: 513 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQR 572

Query: 524 VLNLSYNNLVGQIP 537
            L +    +    P
Sbjct: 573 QLLVEVERMECATP 586

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  158 bits (401), Expect = 7e-42
 Identities = 86/480 (17%), Positives = 153/480 (31%), Gaps = 72/480 (15%)

Query: 77  TNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELR 136
            +   L+LS             S P L  LDLS             I +   +Q+L  L 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR----CEIQ---TIED-GAYQSLSHLS 79

Query: 137 ELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLL 196
            L L    +  L      A S L +LQ L      L    N  + +L+            
Sbjct: 80  TLILTGNPIQSLALG---AFSGLSSLQKLVAVETNLASLENFPIGHLK------------ 124

Query: 197 NLTNLDLSQCDLRG-KYPEKILQVSTLETLDLSYNPL---LQGSLPNFPKNSYLQ-NLNL 251
            L  L+++   ++  K PE    ++ LE LDLS N +       L    +   L  +L+L
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 252 ANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTST-TNLTQLFHVDFSSNHFSG---- 306
           +    + I P     ++ L ++ LR+   +  +  +    L  L         F      
Sbjct: 185 SLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 307 PIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGV 366
                     L  L +    L   L+   +++    + +       +    L    ++ V
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAY-LDYYLDDIIDLFNCLTN-----VSSFSLVSVTIERV 297

Query: 367 VPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPL 426
                +     Q L+  N          L++   L     +  N    +  P        
Sbjct: 298 KD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS------- 348

Query: 427 LQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTG 486
           L+ +D + N                         +   ++      SL  L++S N +  
Sbjct: 349 LEFLDLSRNGLSF---------------------KGCCSQSDFGTTSLKYLDLSFNGVIT 387

Query: 487 SIPSSFGNLKQIESLDLSMNNLSGKIPAQ-LASLNFLSVLNLSYNNLVGQIPTAKHVLPN 545
            + S+F  L+Q+E LD   +NL          SL  L  L++S+ +         + L +
Sbjct: 388 -MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  120 bits (302), Expect = 7e-29
 Identities = 60/345 (17%), Positives = 101/345 (29%), Gaps = 47/345 (13%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNL 132
              LTN++  +L             S       L+L +                  F   
Sbjct: 278 FNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVN----------------CKFGQF 319

Query: 133 KELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFV 192
             L+   L  +  +        +   LP+L+ L+LS        N            F  
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSR-------NGLSFKGCCSQSDF-- 370

Query: 193 ANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKN-SYLQNLNL 251
               +L  LDLS   +        L +  LE LD  ++ L Q S  +   +   L  L++
Sbjct: 371 -GTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 252 ANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTST-TNLTQLFHVDFSSNHFSGPIP- 309
           ++T            L  L  + +   SF         T L  L  +D S        P 
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

Query: 310 SFHESRNLNYLDLSSNNLNG-------------VLNLGRNNLNGTLSDIIFPRNCGLHIL 356
           +F+   +L  L++S NN                VL+   N++  +    +      L  L
Sbjct: 489 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 548

Query: 357 DLSGNQLQGVVPKS--LANCNMLQVLDFRNNHISDNFPCWLRNAS 399
           +L+ N           L      + L      +    P   +   
Sbjct: 549 NLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP 593

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 82.4 bits (204), Expect = 1e-16
 Identities = 44/227 (19%), Positives = 65/227 (28%), Gaps = 54/227 (23%)

Query: 328 NGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHI 387
           N        N      ++  P +     LDLS N L+ +   S  +   LQVLD     I
Sbjct: 9   NITYQCMELNFYKIPDNL--PFS--TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI 64

Query: 388 SDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCST 447
                   ++ S L  L+L  N                                      
Sbjct: 65  QTIEDGAYQSLSHLSTLILTGNPIQSLAL------------------------------- 93

Query: 448 TLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNN 507
                                    SL  L      L        G+LK ++ L+++ N 
Sbjct: 94  ------------------GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135

Query: 508 L-SGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKHVLPNFNLHRRQL 553
           + S K+P   ++L  L  L+LS N +     T   VL    L    L
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  180 bits (459), Expect = 2e-52
 Identities = 80/311 (25%), Positives = 127/311 (40%), Gaps = 49/311 (15%)

Query: 244 SYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTG--PIPTSTTNLTQLFHVDFSS 301
           S+L   +  N ++ G+L D       +  +DL   +     PIP+S  NL  L  +    
Sbjct: 26  SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGG 85

Query: 302 -NHFSGPIP-SFHESRNLNYLDLSSNNLNGVL--NLGRNNLNGTLSDIIFPRNCGLHILD 357
            N+  GPIP +  +   L+YL ++  N++G +   L +      +          L  LD
Sbjct: 86  INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ------IKT--------LVTLD 131

Query: 358 LSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSL-QVLVLRSNNFSGHIS 416
            S N L G +P S+++   L  + F  N IS   P    + S L   + +  N  +G I 
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191

Query: 417 YPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYA 476
               N++   L  VD + N   G  S                          G  K+   
Sbjct: 192 PTFANLN---LAFVDLSRNMLEGDAS-----------------------VLFGSDKNTQK 225

Query: 477 LNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQI 536
           ++++ N+L   +    G  K +  LDL  N + G +P  L  L FL  LN+S+NNL G+I
Sbjct: 226 IHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 537 PTAKHVLPNFN 547
           P     L  F+
Sbjct: 285 PQ-GGNLQRFD 294

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  149 bits (380), Expect = 4e-41
 Identities = 83/320 (25%), Positives = 129/320 (40%), Gaps = 45/320 (14%)

Query: 14  PAKMSQWSDSTNCCD--WTGVDCDEAGH---VIGLDLSAEPILIGRLENASGLFSLQYMQ 68
           P  +S W  +T+CC+  W GV CD       V  LDLS   +           + +    
Sbjct: 21  PTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL--------PKPYPIP--- 69

Query: 69  SQFGLANLTNLTYLNLSH-CGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFN 127
               LANL  L +L +       G IP  I+ L +L  L ++    +SG      IP+F 
Sbjct: 70  --SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSG-----AIPDF- 120

Query: 128 FFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHS 187
               +K L  L      LSG       ++S LPNL  +      + G I     +     
Sbjct: 121 -LSQIKTLVTLDFSYNALSGTLPP---SISSLPNLVGITFDGNRISGAIPDSYGSFSK-- 174

Query: 188 QFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN-FPKNSYL 246
                      T++ +S+  L GK P     ++ L  +DLS N +L+G     F  +   
Sbjct: 175 ---------LFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN-MLEGDASVLFGSDKNT 223

Query: 247 QNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSG 306
           Q ++LA  S +  L   +G+ K L  +DLR+    G +P   T L  L  ++ S N+  G
Sbjct: 224 QKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 307 PIPSFHESRNLNYLDLSSNN 326
            IP     +  +    ++N 
Sbjct: 283 EIPQGGNLQRFDVSAYANNK 302

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  188 bits (478), Expect = 2e-51
 Identities = 77/526 (14%), Positives = 154/526 (29%), Gaps = 92/526 (17%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSS------REPISGFSWRLGIPNF 126
           L N   +T L+L+  G  G +P  I  L  L  L   +                  +   
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 127 NFFQNLKELRELYLDNV------DLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINH-- 178
              +     ++++LD        DL      R   +  +     ++L    +    N   
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT 438

Query: 179 -------HLANLR----SHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDL 227
                   L  L+    ++S F +    ++  + +                +  L  ++L
Sbjct: 439 FISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL 498

Query: 228 SYNPLLQGSLPN-FPKNSYLQNLNLANTSFSGI---------LPDPIGILKYLTRVDLRS 277
              P +   LP+       LQ+LN+A                L D       +    +  
Sbjct: 499 YNCPNM-TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557

Query: 278 CSFTG-PIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNG------- 329
            +    P   S   + +L  +D   N     + +F  +  L  L L  N +         
Sbjct: 558 NNLEEFPASASLQKMVKLGLLDCVHNKVRH-LEAFGTNVKLTDLKLDYNQIEEIPEDFCA 616

Query: 330 ------VLNLGRNNLNGTLSDIIFPRNC-GLHILDLSGNQLQGVVPKSLANCNM-----L 377
                  L    N L   + +I   ++   +  +D S N++         + +       
Sbjct: 617 FTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675

Query: 378 QVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSG-----HISYPRNNVSWPLLQIVDF 432
             +    N I           S +  ++L +N  +            N  +  LL  +D 
Sbjct: 676 STVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDL 735

Query: 433 ASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSF 492
             NK          T+L                        L  +++S+N  + S P+  
Sbjct: 736 RFNKL---------TSL-------------SDDFRATTLPYLSNMDVSYNCFS-SFPTQP 772

Query: 493 GNLKQIESLDLSM------NNLSGKIPAQLASLNFLSVLNLSYNNL 532
            N  Q+++  +        N +  + P  + +   L  L +  N++
Sbjct: 773 LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  182 bits (463), Expect = 3e-49
 Identities = 92/597 (15%), Positives = 175/597 (29%), Gaps = 107/597 (17%)

Query: 2   KNSFIFDVDSTPPAKMSQWSDSTNCCDW---TGVDCDEAGHVIGLDLS------AEPILI 52
           KN   +            W+ +     W    GVD D  G V GL L+        P  I
Sbjct: 284 KNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAI 343

Query: 53  GRLENASGLF----SLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDL 108
           G+L     L     S       FG   LT        H          +    RL   DL
Sbjct: 344 GQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDL 403

Query: 109 SSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLG---TERCKALSFLPNLQVL 165
                         I      + +K+   + L +  +  L    T   KA+  L  LQ++
Sbjct: 404 LQ----------DAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQII 453

Query: 166 NLSSCLLLGPINHHLANLRSHSQFFF-------VANLLNLTNLDLSQCDLRGKYPEKILQ 218
             ++               +              +NL +LT+++L  C    + P+ +  
Sbjct: 454 YFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513

Query: 219 VSTLETLDLSYNPL-----LQGSLPNFPKN----SYLQNLNLANTSFSGI-LPDPIGILK 268
           +  L++L+++ N       L+        +      +Q   +   +         +  + 
Sbjct: 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMV 573

Query: 269 YLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPS--FHESRNLNYLDLSSNN 326
            L  +D            +     +L  +    N     IP      +  +  L  S N 
Sbjct: 574 KLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNK 630

Query: 327 LNGV--------------LNLGRNNLNGTLSDIIFPRNCG----LHILDLSGNQLQGVVP 368
           L  +              ++   N +     +I    +         + LS N++Q    
Sbjct: 631 LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT 690

Query: 369 KSLANCNMLQVLDFRNNHISD-------NFPCWLRNASSLQVLVLRSNNFSGHISYPRNN 421
           +  A  + +  +   NN ++              +N   L  + LR N  +  +S     
Sbjct: 691 ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRA 749

Query: 422 VSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSH 481
            + P L  +D + N F         ++                  +      L A  + H
Sbjct: 750 TTLPYLSNMDVSYNCF---------SSF---------------PTQPLNSSQLKAFGIRH 785

Query: 482 ------NALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 532
                 N +    P+       +  L +  N++  K+  +L     L +L+++ N  
Sbjct: 786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPN 839

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  143 bits (361), Expect = 3e-36
 Identities = 75/472 (15%), Positives = 133/472 (28%), Gaps = 86/472 (18%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNL 132
           +  LT L  +  ++  FT +                   E +S             + NL
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS-------------WSNL 490

Query: 133 KELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFV 192
           K+L ++ L N        +    L  LP LQ LN++    +          R        
Sbjct: 491 KDLTDVELYNCPNMTQLPD---FLYDLPELQSLNIACNRGISAAQLKADWTRLADDED-- 545

Query: 193 ANLLNLTNLDLSQCDLRG-KYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNL 251
                +    +   +L        + ++  L  LD  +N +    L  F  N  L +L L
Sbjct: 546 -TGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKL 602

Query: 252 ANTSFSGILPDPIGILKYLTRVDLRSCSFTG-PIPTSTTNLTQLFHVDFSSNHFSGPIP- 309
                  I  D       +  +          P   +  ++  +  VDFS N        
Sbjct: 603 DYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662

Query: 310 -----SFHESRNLNYLDLSSNNLNGV-------------LNLGRNNL------NGTLSDI 345
                  ++  N + + LS N +                + L  N +      +    D 
Sbjct: 663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDG 722

Query: 346 IFPRNCGLHILDLSGNQLQGVVPKSLANCNM--LQVLDFRNNHISDNFPCWLRNASSLQV 403
            +     L  +DL  N+L  +         +  L  +D   N  S +FP    N+S L+ 
Sbjct: 723 NYKNTYLLTTIDLRFNKLTSL-SDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKA 780

Query: 404 LVLR------SNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATN 457
             +R       N        P    + P L  +   SN             +        
Sbjct: 781 FGIRHQRDAEGNRILRQW--PTGITTCPSLIQLQIGSNDI---------RKV-------- 821

Query: 458 KRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS 509
                   E++     LY L+++ N       +S     +     L  +   
Sbjct: 822 -------DEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  132 bits (334), Expect = 1e-32
 Identities = 52/383 (13%), Positives = 99/383 (25%), Gaps = 55/383 (14%)

Query: 194 NLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLAN 253
           N   +T L L+    +G+ P+ I Q++ L+ L    +           +           
Sbjct: 321 NNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERK 380

Query: 254 TSFSGILP-DPIGILKYLTRVDLRSCSFT-----GPIPTSTTNLTQLFHVDFSSNHFSGP 307
                      +   + L   DL   +        PI   +    +   +   +N  +  
Sbjct: 381 HRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFI 440

Query: 308 IPSFHESRNLNYLDLSSNNLNGV--------LNLGRNNLNGTLSDIIFPRNC-GLHILDL 358
             +      L  +  +++              N                 N   L  ++L
Sbjct: 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW--SNLKDLTDVEL 498

Query: 359 SGNQLQGVVPKSLANCNMLQVLDFRNNHISD---------NFPCWLRNASSLQVLVLRSN 409
                   +P  L +   LQ L+   N                        +Q+  +  N
Sbjct: 499 YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558

Query: 410 NFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMG 469
           N         +      L ++D   NK            L                E  G
Sbjct: 559 NLEE-FPASASLQKMVKLGLLDCVHNKV---------RHL----------------EAFG 592

Query: 470 RFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP--AQLASLNFLSVLNL 527
               L  L + +N +            Q+E L  S N L   IP      S+  +  ++ 
Sbjct: 593 TNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDF 651

Query: 528 SYNNLVGQIPTAKHVLPNFNLHR 550
           SYN +  +       + ++    
Sbjct: 652 SYNKIGSEGRNISCSMDDYKGIN 674

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  119 bits (301), Expect = 2e-28
 Identities = 54/337 (16%), Positives = 108/337 (32%), Gaps = 50/337 (14%)

Query: 72  GLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQN 131
            L  +  L  L+  H            +  +L  L L   + I        IP  +F   
Sbjct: 568 SLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQ-IEE------IPE-DFCAF 617

Query: 132 LKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFF 191
             ++  L   +  L  +          +  +  ++ S   +     +   ++  +     
Sbjct: 618 TDQVEGLGFSHNKLKYI--PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDY----- 670

Query: 192 VANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPL-------LQGSLPNFPKNS 244
               +N + + LS  +++    E     S + T+ LS N +       L+    N+    
Sbjct: 671 --KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTY 728

Query: 245 YLQNLNLANTSFSGILPD-PIGILKYLTRVDLRSCSFTGPIPTSTTNLTQL------FHV 297
            L  ++L     + +  D     L YL+ +D+    F+   PT   N +QL         
Sbjct: 729 LLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR 787

Query: 298 DFSSNHFSGPIP-SFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHIL 356
           D   N      P       +L  L + SN++              + + + P+   L+IL
Sbjct: 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDIR------------KVDEKLTPQ---LYIL 832

Query: 357 DLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPC 393
           D++ N    +   S+       +     +   D   C
Sbjct: 833 DIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGC 869

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 84.9 bits (210), Expect = 2e-17
 Identities = 36/257 (14%), Positives = 79/257 (30%), Gaps = 30/257 (11%)

Query: 302 NHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGN 361
               G    ++     N +   + N N  L++  +        +    N  +  L L+G 
Sbjct: 279 EALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQP-----GVDLDNNGRVTGLSLAGF 333

Query: 362 QLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNN 421
             +G VP ++     L+VL F  +  + +   +     +  +   R +    H       
Sbjct: 334 GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYK-KMFL 392

Query: 422 VSWPLLQIVDFASNKFGG--RLSQKCSTTLGMRYQATNKRCRDQAT---EEMGRFKSLYA 476
                L + D   +       +      +             ++ T   + + R   L  
Sbjct: 393 DYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQI 452

Query: 477 LNMSHNALTG-------------------SIPSSFGNLKQIESLDLSMNNLSGKIPAQLA 517
           +  +++  T                    +   S+ NLK +  ++L       ++P  L 
Sbjct: 453 IYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512

Query: 518 SLNFLSVLNLSYNNLVG 534
            L  L  LN++ N  + 
Sbjct: 513 DLPELQSLNIACNRGIS 529

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 78.0 bits (192), Expect = 4e-15
 Identities = 30/200 (15%), Positives = 61/200 (30%), Gaps = 23/200 (11%)

Query: 69  SQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNF 128
                    N + + LS+           ++   + T+ LS+   ++        P    
Sbjct: 665 CSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL-MTSIPENSLKPKDGN 723

Query: 129 FQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLL------------LGPI 176
           ++N   L  + L    L+ L  +     + LP L  +++S                L   
Sbjct: 724 YKNTYLLTTIDLRFNKLTSLSDD--FRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAF 781

Query: 177 NHHLANLRSHSQFF-----FVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNP 231
                     ++        +    +L  L +   D+R K  EK+     L  LD++ NP
Sbjct: 782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNP 838

Query: 232 LLQGSLPNFPKNSYLQNLNL 251
            +   + +           L
Sbjct: 839 NISIDVTSVCPYIEAGMYVL 858

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.8 bits (124), Expect = 4e-07
 Identities = 10/112 (8%), Positives = 35/112 (31%)

Query: 426 LLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALT 485
           + + +D  + ++          +L   +        DQ   ++     +  L+++     
Sbjct: 277 IWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAK 336

Query: 486 GSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIP 537
           G +P + G L +++ L    ++ +              +     + +     
Sbjct: 337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYK 388

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.4 bits (123), Expect = 6e-07
 Identities = 10/82 (12%), Positives = 26/82 (31%)

Query: 477 LNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQI 536
            N   +           N  ++  L L+     G++P  +  L  L VL+   ++     
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 537 PTAKHVLPNFNLHRRQLQAMKL 558
                     ++   +   +++
Sbjct: 364 RLFGDEELTPDMSEERKHRIRM 385

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  174 bits (443), Expect = 1e-47
 Identities = 83/513 (16%), Positives = 151/513 (29%), Gaps = 72/513 (14%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNL 132
            + L NLT+L+L+ C           S  RL TL L++  P+   +              
Sbjct: 53  FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA-NPLIFMAETA-------LSGP 104

Query: 133 KELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRS------- 185
           K L+ L+     +S +       L     L+ L L S  +                    
Sbjct: 105 KALKHLFFIQTGISSIDFI---PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQ 161

Query: 186 -------HSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLP 238
                    +           +L+L+  D+           +  ++L+      L     
Sbjct: 162 NNAIHYLSKEDMSSLQQATNLSLNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFK 220

Query: 239 NFPKNSY--LQNLNLANTSFSGILPDPIGILK--YLTRVDLRSCSFTGPIPTSTTNLTQL 294
               ++   L      +     I P     L    +  ++L+   F      +    + L
Sbjct: 221 GLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGL 280

Query: 295 FHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGV-------------LNLGRNNLNGT 341
             +D ++ H S           L  L LS+N    +             L++  N     
Sbjct: 281 QELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340

Query: 342 LSDIIFPRNCGLHILDLSGNQLQ--GVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNAS 399
           L          L  LDLS + ++        L N + LQ L+   N          +   
Sbjct: 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400

Query: 400 SLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKR 459
            L++L L                +  LL++++ + +                        
Sbjct: 401 QLELLDLAFTRLKV-KDAQSPFQNLHLLKVLNLSHSLL---------------------- 437

Query: 460 CRDQATEEMGRFKSLYALNMSHNALTGSI---PSSFGNLKQIESLDLSMNNLSGKIPAQL 516
               + +      +L  LN+  N          +S   L ++E L LS  +LS       
Sbjct: 438 -DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496

Query: 517 ASLNFLSVLNLSYNNLVGQIPTAKHVLPNFNLH 549
            SL  ++ ++LS+N L      A   L    L+
Sbjct: 497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLN 529

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  173 bits (441), Expect = 2e-47
 Identities = 83/498 (16%), Positives = 163/498 (32%), Gaps = 67/498 (13%)

Query: 69  SQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNF 128
           ++  L+    L +L     G +      + +   L +L L S          +       
Sbjct: 97  AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN--------HISSIKLPK 148

Query: 129 FQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQ 188
               ++L+ L   N  +  L  E    +S L     L+L           +L        
Sbjct: 149 GFPTEKLKVLDFQNNAIHYLSKE---DMSSLQQATNLSL-----------NLNGNDIAGI 194

Query: 189 FFFVANLLNLTNLDLSQCDLRGKYPEKI--LQVSTLETLDLSYNPL--LQGSLPNFPKNS 244
                +     +L+           + +    + +L            +  ++       
Sbjct: 195 EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM 254

Query: 245 YLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHF 304
            ++++NL    F  I  +       L  +DL +   +  +P+    L+ L  +  S+N F
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKF 313

Query: 305 SGPIP-SFHESRNLNYLDLSSNNLNG--------------VLNLGRNNLNGTLSDIIFPR 349
                 S     +L +L +  N                   L+L  +++  +    +  R
Sbjct: 314 ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373

Query: 350 NCG-LHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPC-WLRNASSLQVLVLR 407
           N   L  L+LS N+   +  ++   C  L++LD     +         +N   L+VL L 
Sbjct: 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433

Query: 408 SNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEE 467
            +      S  +     P LQ ++   N F     QK ++   +                
Sbjct: 434 HSLLDI--SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG--------------- 476

Query: 468 MGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNL 527
                 L  L +S   L+     +F +LK +  +DLS N L+      L+ L  +  LNL
Sbjct: 477 -----RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNL 530

Query: 528 SYNNLVGQIPTAKHVLPN 545
           + N++   +P+   +L  
Sbjct: 531 ASNHISIILPSLLPILSQ 548

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  157 bits (399), Expect = 1e-41
 Identities = 85/484 (17%), Positives = 149/484 (30%), Gaps = 70/484 (14%)

Query: 82  LNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLD 141
            N  + G   EIP  + +      L+ S           L       F  L  L  L L 
Sbjct: 17  YNCENLGLN-EIPGTLPNS--TECLEFSFN--------VLPTIQNTTFSRLINLTFLDLT 65

Query: 142 NVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNL 201
              +  +  +          L  L L++  L+      L+  +             L +L
Sbjct: 66  RCQIYWIHED---TFQSQHRLDTLVLTANPLIFMAETALSGPK------------ALKHL 110

Query: 202 DLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILP 261
              Q  +       +    TLE+L L  N +    LP       L+ L+  N +   +  
Sbjct: 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK 170

Query: 262 DPIGILKYLTRVDLR-SCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIP---SFHESRNL 317
           + +  L+  T + L  + +    I     +      ++F        I         ++L
Sbjct: 171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSL 230

Query: 318 NYLDLSSNNLNGV---------------LNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQ 362
                   +   +               +NL ++     +S   F    GL  LDL+   
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATH 289

Query: 363 LQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNV 422
           L   +P  L   + L+ L    N   +       N  SL  L ++ N     +       
Sbjct: 290 LSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG-TGCLE 347

Query: 423 SWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHN 482
           +   L+ +D + +                          D    ++     L +LN+S+N
Sbjct: 348 NLENLRELDLSHDDI---------------------ETSDCCNLQLRNLSHLQSLNLSYN 386

Query: 483 ALTGSIPSSFGNLKQIESLDLSMNNLSGKIP-AQLASLNFLSVLNLSYNNLVGQIPTAKH 541
                   +F    Q+E LDL+   L  K   +   +L+ L VLNLS++ L         
Sbjct: 387 EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446

Query: 542 VLPN 545
            LP 
Sbjct: 447 GLPA 450

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  145 bits (367), Expect = 3e-37
 Identities = 89/476 (18%), Positives = 153/476 (32%), Gaps = 77/476 (16%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNL 132
           L N   L  L L     +     +     +L  LD  +   I   S            +L
Sbjct: 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN-NAIHYLS-------KEDMSSL 176

Query: 133 KELRELYLDNVDLSGLGTERCKALSF-LPNLQVLNLSSCLLLGPINHHLANLRSHS---- 187
           ++   L L+   L+G      +  +F     Q LN      L  I   L N    S    
Sbjct: 177 QQATNLSLN---LNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLG 233

Query: 188 ------------QFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQG 235
                         F     +++ +++L +              S L+ LDL+   L   
Sbjct: 234 TFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL--S 291

Query: 236 SLPN-FPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTST-TNLTQ 293
            LP+     S L+ L L+   F  +          LT + ++  +    + T    NL  
Sbjct: 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351

Query: 294 LFHVDFSSNHFSG---PIPSFHESRNLNYLDLSSNNLNGV-------------LNLGRNN 337
           L  +D S +                +L  L+LS N    +             L+L    
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411

Query: 338 LNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNF---PCW 394
           L    +   F     L +L+LS + L     +       LQ L+ + NH           
Sbjct: 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS 471

Query: 395 LRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQ 454
           L+    L++LVL   + S    +   ++    +  VD + N+          T+      
Sbjct: 472 LQTLGRLEILVLSFCDLSSIDQHAFTSLKM--MNHVDLSHNRL---------TSS----- 515

Query: 455 ATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG 510
                    + E +   K +Y LN++ N ++  +PS    L Q  +++L  N L  
Sbjct: 516 ---------SIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  122 bits (307), Expect = 2e-29
 Identities = 54/332 (16%), Positives = 104/332 (31%), Gaps = 29/332 (8%)

Query: 223 ETLDLSYNPLLQGSLPNFPKN--SYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSF 280
           +T +          L   P    +  + L  +      I       L  LT +DL  C  
Sbjct: 15  KTYNCENL-----GLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI 69

Query: 281 TGPIPTSTTNLTQLFHVDFSSNHFSGPIP-SFHESRNLNYLDLSSNNLNGVLNLGRNNLN 339
                 +  +  +L  +  ++N        +    + L +L      ++           
Sbjct: 70  YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS---------- 119

Query: 340 GTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNAS 399
             +  I       L  L L  N +  +          L+VLDF+NN I       + +  
Sbjct: 120 --IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177

Query: 400 SLQVLVLR-SNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCS----TTLGMRYQ 454
               L L  + N    I          + Q ++F   +    + +        +L +   
Sbjct: 178 QATNLSLNLNGNDIAGI--EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTF 235

Query: 455 ATNKRCR-DQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP 513
                     A  E     S+ ++N+  +       ++F     ++ LDL+  +LS ++P
Sbjct: 236 EDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELP 294

Query: 514 AQLASLNFLSVLNLSYNNLVGQIPTAKHVLPN 545
           + L  L+ L  L LS N        +    P+
Sbjct: 295 SGLVGLSTLKKLVLSANKFENLCQISASNFPS 326

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  117 bits (294), Expect = 7e-28
 Identities = 77/350 (22%), Positives = 123/350 (35%), Gaps = 50/350 (14%)

Query: 72  GLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQN 131
           GL  L+ L  L LS   F        S+ P L  L +         + +         +N
Sbjct: 296 GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG-------NTKRLELGTGCLEN 348

Query: 132 LKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFF 191
           L+ LREL L + D+          L  L +LQ LNLS    L                  
Sbjct: 349 LENLRELDLSHDDIETSDCCN-LQLRNLSHLQSLNLSYNEPLSLKTEAFKECP------- 400

Query: 192 VANLLNLTNLDLSQCDLRGKYPEKILQ-VSTLETLDLSYNPLLQGSLPNFPKNSYLQNLN 250
                 L  LDL+   L+ K  +   Q +  L+ L+LS++ L   S   F     LQ+LN
Sbjct: 401 -----QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455

Query: 251 LANTSFSGILPDPIGILKYLTRV---DLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGP 307
           L    F          L+ L R+    L  C  +     + T+L  + HVD S N  +  
Sbjct: 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515

Query: 308 IPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVV 367
                      YL+L+SN+++             +   + P       ++L  N L    
Sbjct: 516 SIEALSHLKGIYLNLASNHIS------------IILPSLLPILSQQRTINLRQNPLDC-- 561

Query: 368 PKSLANCNMLQVLDFRNNHI-----SDNFPCWLRNASSLQVLVLRSNNFS 412
                 C+ +  L++   ++     +++  C   N   L+ + L     S
Sbjct: 562 -----TCSNIYFLEWYKENMQKLEDTEDTLC--ENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 87.4 bits (217), Expect = 3e-18
 Identities = 51/285 (17%), Positives = 88/285 (30%), Gaps = 52/285 (18%)

Query: 273 VDLRSCSFT---GPIPTSTTNLTQLFHVDFSSNHFSGPIP-SFHESRNLNYLDLSSNNLN 328
            +  +       G +P ST  L      +FS N        +F    NL +LDL+   + 
Sbjct: 17  YNCENLGLNEIPGTLPNSTECL------EFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY 70

Query: 329 GVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHIS 388
                        + +  F     L  L L+ N L  +   +L+    L+ L F    IS
Sbjct: 71  ------------WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS 118

Query: 389 DNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTT 448
                 L N  +L+ L L SN+ S              L+++DF +N             
Sbjct: 119 SIDFIPLHNQKTLESLYLGSNHISSIK--LPKGFPTEKLKVLDFQNNAI----------- 165

Query: 449 LGMRYQATNKRCRDQATEEMGRFKSL--YALNMSHNALTGSIPSSFGNLKQIESLDLSMN 506
                          + E+M   +     +LN++ N +   I     +    +SL+    
Sbjct: 166 ------------HYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGT 212

Query: 507 NLSGKIPAQLASLNF--LSVLNLSYNNLVGQIPTAKHVLPNFNLH 549
                I   L +     L +      +     P     L   ++ 
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE 257

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 78.9 bits (195), Expect = 1e-15
 Identities = 44/259 (16%), Positives = 75/259 (28%), Gaps = 39/259 (15%)

Query: 312 HESRNLNYLDLSSNNLNGV----------LNLGRNNLNGTLSDIIFPRNCGLHILDLSGN 361
            E       +  +  LN +          L    N L  T+ +  F R   L  LDL+  
Sbjct: 9   IEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRC 67

Query: 362 QLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNN 421
           Q+  +   +  + + L  L    N +       L    +L+ L       S     P +N
Sbjct: 68  QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHN 127

Query: 422 VSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSH 481
                L+ +   SN        K   T                       + L  L+  +
Sbjct: 128 --QKTLESLYLGSNHISSIKLPKGFPT-----------------------EKLKVLDFQN 162

Query: 482 NALTGSIPSSFGNLK--QIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTA 539
           NA+         +L+     SL+L+ N+++G I            LN      +  I   
Sbjct: 163 NAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKG 221

Query: 540 KHVLPNFNLHRRQLQAMKL 558
                  +L     + M  
Sbjct: 222 LKNSTIQSLWLGTFEDMDD 240

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.4 bits (173), Expect = 7e-13
 Identities = 41/170 (24%), Positives = 62/170 (36%), Gaps = 21/170 (12%)

Query: 63  SLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLG 122
            L+   +Q    NL  L  LNLSH             LP L  L+L      + F     
Sbjct: 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG----NHFPKGNI 466

Query: 123 IPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLAN 182
               N  Q L  L  L L   DLS +      A + L  +  ++LS   L          
Sbjct: 467 QKT-NSLQTLGRLEILVLSFCDLSSIDQH---AFTSLKMMNHVDLSHNRL---------- 512

Query: 183 LRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPL 232
             + S    +++L  +  L+L+   +    P  +  +S   T++L  NPL
Sbjct: 513 --TSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPL 559

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  165 bits (421), Expect = 1e-44
 Identities = 86/499 (17%), Positives = 147/499 (29%), Gaps = 54/499 (10%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNL 132
              L +L+ L L+        P   S L  L  L             +L          L
Sbjct: 76  WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE--------TKLASLESFPIGQL 127

Query: 133 KELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFV 192
             L++L + +  +           S L NL  ++LS   +     + L  LR + Q    
Sbjct: 128 ITLKKLNVAHNFIHSCKLP--AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ---- 181

Query: 193 ANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKN-SYLQNLNL 251
                  +LD+S   +     ++  Q   L  L L  N      +    +N + L    L
Sbjct: 182 ----VNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236

Query: 252 ANTSFSG------ILPDPIGILKYLTRVDLR--SCSFTGPIPTSTTNLTQLFHVDFSSNH 303
               F          P  +  L  +T  + R    +           L  +  +  +   
Sbjct: 237 ILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS 296

Query: 304 FSGPIPSFHESRNLNYLDLSSNNLNG----------VLNLGRNNLNGTLSDIIFPRNCGL 353
               +    +      L +    L             L L  N  + +   +  P    L
Sbjct: 297 IKY-LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPS---L 352

Query: 354 HILDLSGNQLQGVVPKSLANCNM--LQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNF 411
             LDLS N L      S ++     L+ LD   N               LQ L  + +  
Sbjct: 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTL 411

Query: 412 SGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCS-----TTLGMRYQATNKRCRDQATE 466
              ++     +S   L  +D +                   TL M     N    +  + 
Sbjct: 412 KR-VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG---NSFKDNTLSN 467

Query: 467 EMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLN 526
                 +L  L++S   L       F  L +++ L++S NNL     +    L  LS L+
Sbjct: 468 VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD 527

Query: 527 LSYNNLVGQIPTAKHVLPN 545
            S+N +       +H   +
Sbjct: 528 CSFNRIETSKGILQHFPKS 546

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  151 bits (383), Expect = 2e-39
 Identities = 92/501 (18%), Positives = 156/501 (31%), Gaps = 82/501 (16%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNL 132
            +N + L +L+LS C            L  L  L L+   PI  FS          F  L
Sbjct: 52  FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFS-------PGSFSGL 103

Query: 133 KELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFV 192
             L  L      L+ L +     +  L  L+ LN++           + + +  + F   
Sbjct: 104 TSLENLVAVETKLASLESF---PIGQLITLKKLNVAHN--------FIHSCKLPAYF--- 149

Query: 193 ANLLNLTNLDLSQCDLRGKYPEKILQVS----TLETLDLSYNPLLQGSLPNFPKNSYLQN 248
           +NL NL ++DLS   ++      +  +        +LD+S NP +        +   L  
Sbjct: 150 SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP-IDFIQDQAFQGIKLHE 208

Query: 249 LNLANTSFSG-ILPDPIGILKYLTRVDLRSCSFTG------PIPTSTTNLTQLFHVDFSS 301
           L L     S  I+   +  L  L    L    F          P+    L  +   +F  
Sbjct: 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268

Query: 302 NH---FSGPIPSFHESRNLNYLDLSSNNLNGV-----------LNLGRNNLNGTLSDIIF 347
            +   FS  I  FH   N++ + L+  ++  +           L++ R  L         
Sbjct: 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK----QFPT 324

Query: 348 PRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHIS--DNFPCWLRNASSLQVLV 405
                L  L L+ N+    +         L  LD   N +S            +SL+ L 
Sbjct: 325 LDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382

Query: 406 LRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQAT 465
           L  N      +          LQ +DF  +            +L                
Sbjct: 383 LSFNGAIIMSANFMGLEE---LQHLDFQHSTLKRVTEFSAFLSL---------------- 423

Query: 466 EEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQ-LASLNFLSV 524
                 + L  L++S+          F  L  + +L ++ N+      +   A+   L+ 
Sbjct: 424 ------EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTF 477

Query: 525 LNLSYNNLVGQIPTAKHVLPN 545
           L+LS   L          L  
Sbjct: 478 LDLSKCQLEQISWGVFDTLHR 498

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  149 bits (379), Expect = 6e-39
 Identities = 90/497 (18%), Positives = 146/497 (29%), Gaps = 100/497 (20%)

Query: 73  LANLTNLTYLNLSHCGFTG-EIPTEISSLPRLVTLDLS----SREPISGFSW-------- 119
           +  L  L  LN++H      ++P   S+L  LV +DLS        ++   +        
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183

Query: 120 --------RLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCL 171
                    +       FQ +K L EL L     S    + C  L  L  L V  L    
Sbjct: 184 LSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTC--LQNLAGLHVHRLILGE 240

Query: 172 LLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNP 231
                N  +               + +    L+  +       K   ++ +  + L+   
Sbjct: 241 FKDERNLEI----FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS 296

Query: 232 LLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNL 291
           +    L + PK+   Q+L++           P   L +L  + L     +  I      L
Sbjct: 297 I--KYLEDVPKHFKWQSLSIIRCQLKQF---PTLDLPFLKSLTLTMNKGS--ISFKKVAL 349

Query: 292 TQLFHVDFSSNHFSGPIP-SFHE--SRNLNYLDLSSNNLNGV------------LNLGRN 336
             L ++D S N  S     S+ +  + +L +LDLS N    +            L+   +
Sbjct: 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHS 409

Query: 337 NLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFP-CWL 395
            L        F     L  LD+S    +            L  L    N   DN      
Sbjct: 410 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF 469

Query: 396 RNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQA 455
            N ++L  L L                     Q+   +   F                  
Sbjct: 470 ANTTNLTFLDLSKC------------------QLEQISWGVFDT---------------- 495

Query: 456 TNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQ 515
                             L  LNMSHN L     S +  L  + +LD S N +       
Sbjct: 496 ---------------LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 540

Query: 516 LASLNFLSVLNLSYNNL 532
                 L+  NL+ N++
Sbjct: 541 QHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  144 bits (364), Expect = 7e-37
 Identities = 81/490 (16%), Positives = 141/490 (28%), Gaps = 85/490 (17%)

Query: 77  TNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELR 136
           ++   ++LS            S+   L  LDLS  E          I +   +  L  L 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI-------ETIED-KAWHGLHHLS 83

Query: 137 ELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLL 196
            L L    +         + S L +L+ L      L    +  +  L             
Sbjct: 84  NLILTGNPIQSFSPG---SFSGLTSLENLVAVETKLASLESFPIGQLI------------ 128

Query: 197 NLTNLDLSQCDLRG-KYPEKILQVSTLETLDLSYNPLLQ---GSLPNFPKNSY-LQNLNL 251
            L  L+++   +   K P     ++ L  +DLSYN +       L    +N     +L++
Sbjct: 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188

Query: 252 ANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIP-TSTTNLTQLFHVDFSSNHFSG---- 306
           +      I  D       L  + LR    +  I  T   NL  L         F      
Sbjct: 189 SLNPIDFI-QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247

Query: 307 ---PIPSFHESRNLNYLDLSSNNLNG---------------VLNLGRNNLNGTLSDIIFP 348
                       ++   +      N                 ++L   ++   L D+   
Sbjct: 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKH 306

Query: 349 RNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRS 408
                  L +   QL+      L     L+ L    N  S +F        SL  L L  
Sbjct: 307 FK--WQSLSIIRCQLKQFPTLDLPF---LKSLTLTMNKGSISFK--KVALPSLSYLDLSR 359

Query: 409 NNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEM 468
           N  S       +++    L+ +D + N                             +   
Sbjct: 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM------------------------SANF 395

Query: 469 GRFKSLYALNMSHNALTGSIP-SSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNL 527
              + L  L+  H+ L      S+F +L+++  LD+S  N           L  L+ L +
Sbjct: 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455

Query: 528 SYNNLVGQIP 537
           + N+      
Sbjct: 456 AGNSFKDNTL 465

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  137 bits (347), Expect = 1e-34
 Identities = 75/352 (21%), Positives = 118/352 (33%), Gaps = 30/352 (8%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNL 132
           L NL  L    L    F  E   EI     +  L   + +            +   F  L
Sbjct: 225 LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL 284

Query: 133 KELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLR----SH-- 186
             +  + L  V +  L     + +      Q L++  C L       L  L+    +   
Sbjct: 285 ANVSAMSLAGVSIKYL-----EDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNK 339

Query: 187 -SQFFFVANLLNLTNLDLSQCDLRGKYPE--KILQVSTLETLDLSYNPLLQGSLPNFPKN 243
            S  F    L +L+ LDLS+  L          L  ++L  LDLS+N        NF   
Sbjct: 340 GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSANFMGL 398

Query: 244 SYLQNLNLANTSFSGILP-DPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSN 302
             LQ+L+  +++   +        L+ L  +D+   +           LT L  +  + N
Sbjct: 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458

Query: 303 HFSGPIPS--FHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSG 360
            F     S  F  + NL +LDLS   L              +S  +F     L +L++S 
Sbjct: 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQ------------ISWGVFDTLHRLQLLNMSH 506

Query: 361 NQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFS 412
           N L  +          L  LD   N I  +         SL    L +N+ +
Sbjct: 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  114 bits (287), Expect = 5e-27
 Identities = 74/421 (17%), Positives = 135/421 (32%), Gaps = 78/421 (18%)

Query: 160 PNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQV 219
            + + ++LS   L    ++  +N               L  LDLS+C++     +    +
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFS------------ELQWLDLSRCEIETIEDKAWHGL 79

Query: 220 STLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCS 279
             L  L L+ NP+   S  +F   + L+NL    T  + +   PIG L  L ++++    
Sbjct: 80  HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF 139

Query: 280 FTG-PIPTSTTNLTQLFHVDFSSNHFSGPIPS-----FHESRNLNYLDLSSNNLNGV--- 330
                +P   +NLT L HVD S N+      +         +    LD+S N ++ +   
Sbjct: 140 IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQ 199

Query: 331 ---------LNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLD 381
                    L L  N  +  +         GLH+  L   + +                 
Sbjct: 200 AFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD---------------- 243

Query: 382 FRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRL 441
               ++    P  +     + +   R    +              +  +  A        
Sbjct: 244 --ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI---- 297

Query: 442 SQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESL 501
                                +  E++ +     +L++    L         +L  ++SL
Sbjct: 298 ---------------------KYLEDVPKHFKWQSLSIIRCQLKQF---PTLDLPFLKSL 333

Query: 502 DLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKHVLPNFNLHRRQLQAMKLIGS 561
            L+MN  S  I  +  +L  LS L+LS N L      +   L   +L    L     I  
Sbjct: 334 TLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM 391

Query: 562 S 562
           S
Sbjct: 392 S 392

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 92.8 bits (231), Expect = 5e-20
 Identities = 44/298 (14%), Positives = 84/298 (28%), Gaps = 33/298 (11%)

Query: 263 PIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIP-SFHESRNLNYLD 321
           P  I      +DL           S +N ++L  +D S          ++H   +L+ L 
Sbjct: 27  PDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLI 86

Query: 322 LSSNNLNGV-------------LNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGV-V 367
           L+ N +                L      L   L      +   L  L+++ N +    +
Sbjct: 87  LTGNPIQSFSPGSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFIHSCKL 145

Query: 368 PKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLR---SNNFSGHISYPRNNVSW 424
           P   +N   L  +D   N+I       L+       + L    S N    I         
Sbjct: 146 PAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFI--QDQAFQG 203

Query: 425 PLLQIVDFASNKFGGRLSQKCSTTLGM-----RYQATNKRCRDQATEEMGRFKSLYALNM 479
             L  +    N     + + C   L             K  R+    E    + L  + +
Sbjct: 204 IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263

Query: 480 -----SHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 532
                ++          F  L  + ++ L+  ++       +        L++    L
Sbjct: 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQL 319

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 85.9 bits (213), Expect = 9e-18
 Identities = 50/269 (18%), Positives = 76/269 (28%), Gaps = 44/269 (16%)

Query: 271 TRVDLRSCSFT---GPIPTSTTNLTQLFHVDFSSNHFSGPIP-SFHESRNLNYLDLSSNN 326
                     +     IP+ST N+      D S N        SF     L +LDLS   
Sbjct: 14  ITYQCMDQKLSKVPDDIPSSTKNI------DLSFNPLKILKSYSFSNFSELQWLDLSRCE 67

Query: 327 LNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNH 386
           +              + D  +     L  L L+GN +Q   P S +    L+ L      
Sbjct: 68  IET------------IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK 115

Query: 387 ISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCS 446
           ++      +    +L+ L +  N        P    +   L  VD + N           
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFIHS-CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174

Query: 447 TTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMN 506
                                        +L+MS N +      +F  +K +  L L  N
Sbjct: 175 FLRENPQ-------------------VNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGN 214

Query: 507 NLSGKIPA-QLASLNFLSVLNLSYNNLVG 534
             S  I    L +L  L V  L       
Sbjct: 215 FNSSNIMKTCLQNLAGLHVHRLILGEFKD 243

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 82.4 bits (204), Expect = 1e-16
 Identities = 43/246 (17%), Positives = 75/246 (30%), Gaps = 40/246 (16%)

Query: 306 GPIPSFHESRNLNYLDLSSNNLNGV----------LNLGRNNLNGTLSDIIFPRNCGLHI 355
           G +    E             L+ V          ++L  N L   L    F     L  
Sbjct: 2   GSLNPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLK-ILKSYSFSNFSELQW 60

Query: 356 LDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHI 415
           LDLS  +++ +  K+    + L  L    N I    P      +SL+ LV      +   
Sbjct: 61  LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 120

Query: 416 SYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLY 475
           S+P   +    L+ ++ A N                           +         +L 
Sbjct: 121 SFPIGQL--ITLKKLNVAHNFIHS----------------------CKLPAYFSNLTNLV 156

Query: 476 ALNMSHNALTGSIPSSFGNLKQ----IESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNN 531
            +++S+N +     +    L++      SLD+S+N +          +  L  L L  N 
Sbjct: 157 HVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNF 215

Query: 532 LVGQIP 537
               I 
Sbjct: 216 NSSNIM 221

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 19/75 (25%), Positives = 31/75 (41%)

Query: 471 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYN 530
             S   +++S N L      SF N  +++ LDLS   +          L+ LS L L+ N
Sbjct: 31  PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 531 NLVGQIPTAKHVLPN 545
            +    P +   L +
Sbjct: 91  PIQSFSPGSFSGLTS 105

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  150 bits (381), Expect = 1e-38
 Identities = 102/504 (20%), Positives = 165/504 (32%), Gaps = 73/504 (14%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEI-SSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQN 131
              L  L  L L        I  E   +LP L  LDL S         ++   + + FQ 
Sbjct: 44  FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS--------KIYFLHPDAFQG 95

Query: 132 LKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFF 191
           L  L EL L    LS    +       L  L  L+LS           + +L  H  F  
Sbjct: 96  LFHLFELRLYFCGLSDAVLKD-GYFRNLKALTRLDLSKN--------QIRSLYLHPSF-- 144

Query: 192 VANLLNLTNLDLSQCDLRGKYPE--KILQVSTLETLDLSYNPLLQ------GSLPNFPKN 243
              L +L ++D S   +        + LQ  TL    L+ N L        G   N  +N
Sbjct: 145 -GKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN 203

Query: 244 SYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNH 303
             L+ L+++   ++  +                S + +     S      +    F  ++
Sbjct: 204 MVLEILDVSGNGWTVDITG------------NFSNAISKSQAFSLILAHHIMGAGFGFHN 251

Query: 304 FSGPIPSF---HESRNLNYLDLSSNNLNGV-------------LNLGRNNLNGTLSDIIF 347
              P  +        ++ +LDLS   +  +             LNL  N +N  ++D  F
Sbjct: 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAF 310

Query: 348 PRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLR 407
                L +L+LS N L  +   +      +  +D + NHI+       +    LQ L LR
Sbjct: 311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLR 370

Query: 408 SNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEE 467
            N  +            P +  +  + NK         +  L   + + N+         
Sbjct: 371 DNALT-------TIHFIPSIPDIFLSGNKLVTLPKINLTANL--IHLSENRLENLDILYF 421

Query: 468 MGRFKSLYALNMSHNALTG-SIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNF----- 521
           + R   L  L ++ N  +  S   +      +E L L  N L      +L    F     
Sbjct: 422 LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481

Query: 522 LSVLNLSYNNLVGQIPTAKHVLPN 545
           L VL L++N L    P     L  
Sbjct: 482 LQVLYLNHNYLNSLPPGVFSHLTA 505

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  141 bits (356), Expect = 2e-35
 Identities = 93/486 (19%), Positives = 161/486 (33%), Gaps = 56/486 (11%)

Query: 73  LANLTNLTYLNLSHCGFTG-EIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQN 131
             NL  LT L+LS        +      L  L ++D SS   I      +        Q 
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS-NQIF----LVCEHELEPLQG 173

Query: 132 LKELRELYLDNVDLSGL---GTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQ 188
              L    L    L         +C        L++L++S       I  + +N  S SQ
Sbjct: 174 KT-LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ 232

Query: 189 FFFVANLLNLTNLDLSQCDLRGKYPE--KILQVSTLETLDLSYNPLLQGSLPNFPKNSYL 246
            F +    ++        +++         L  S++  LDLS+  +   +   F     L
Sbjct: 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDL 292

Query: 247 QNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSG 306
           + LNLA    + I  +    L  L  ++L          ++   L ++ ++D   NH + 
Sbjct: 293 KVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI 352

Query: 307 -PIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQG 365
               +F     L  LDL  N L  +  +                   +  + LSGN+L  
Sbjct: 353 IQDQTFKFLEKLQTLDLRDNALTTIHFIPS-----------------IPDIFLSGNKLVT 395

Query: 366 VVPKSLANCNMLQVLDFRNNHISDNFPCW-LRNASSLQVLVLRSNNFSGHISYPRNNVSW 424
           +   +L       ++    N + +    + L     LQ+L+L  N FS   S  +     
Sbjct: 396 LPKINLT----ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS-SCSGDQTPSEN 450

Query: 425 PLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNAL 484
           P L+ +    N        +    +                        L  L ++HN L
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDV------------------FEGLSHLQVLYLNHNYL 492

Query: 485 TGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKHVLP 544
               P  F +L  +  L L+ N L+      L +   L +L++S N L+   P     L 
Sbjct: 493 NSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN--LEILDISRNQLLAPNPDVFVSLS 550

Query: 545 NFNLHR 550
             ++  
Sbjct: 551 VLDITH 556

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  107 bits (270), Expect = 1e-24
 Identities = 68/369 (18%), Positives = 118/369 (31%), Gaps = 71/369 (19%)

Query: 71  FGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQ 130
           F     +++ +L+LSH            +L  L  L+L+  + I+             F 
Sbjct: 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKI-------ADEAFY 311

Query: 131 NLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFF 190
            L  L+ L L    L  L +        LP +  ++L              ++       
Sbjct: 312 GLDNLQVLNLSYNLLGELYSS---NFYGLPKVAYIDLQKN-----------HIAIIQDQT 357

Query: 191 FVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLN 250
           F   L  L  LDL    L       I  + ++  + LS N L+  +LP    N     ++
Sbjct: 358 F-KFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLV--TLPKI--NLTANLIH 407

Query: 251 LANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPS 310
           L+      +                        I      +  L  +  + N FS     
Sbjct: 408 LSENRLENL-----------------------DILYFLLRVPHLQILILNQNRFSSCSGD 444

Query: 311 --FHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVP 368
               E+ +L  L L  N L              L   +F     L +L L+ N L  + P
Sbjct: 445 QTPSENPSLEQLFLGENMLQLAWE-------TELCWDVFEGLSHLQVLYLNHNYLNSLPP 497

Query: 369 KSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQ 428
              ++   L+ L   +N ++      L   ++L++L +  N          N   +  L 
Sbjct: 498 GVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAP-----NPDVFVSLS 550

Query: 429 IVDFASNKF 437
           ++D   NKF
Sbjct: 551 VLDITHNKF 559

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 65.2 bits (159), Expect = 3e-11
 Identities = 39/211 (18%), Positives = 71/211 (33%), Gaps = 30/211 (14%)

Query: 353 LHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNF-PCWLRNASSLQVLVLRSNNF 411
              L LS N ++ V   S      LQ+L+  + +          RN  +L++L L S+  
Sbjct: 26  TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85

Query: 412 SG-HISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGR 470
              H    +       L  +          + +                           
Sbjct: 86  YFLHPDAFQGLFH---LFELRLYFCGLSDAVLK---------------------DGYFRN 121

Query: 471 FKSLYALNMSHNALTG-SIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNF--LSVLNL 527
            K+L  L++S N +    +  SFG L  ++S+D S N +      +L  L    LS  +L
Sbjct: 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181

Query: 528 SYNNLVGQIPTAKHVLPNFNLHRRQLQAMKL 558
           + N+L  ++        N       L+ + +
Sbjct: 182 AANSLYSRVSVDWGKCMN-PFRNMVLEILDV 211

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.5 bits (113), Expect = 9e-06
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 473 SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQ-LASLNFLSVLNLSYNN 531
           +   L +S N +     SSF  L+Q++ L+L        I  +   +L  L +L+L  + 
Sbjct: 25  TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84

Query: 532 L 532
           +
Sbjct: 85  I 85

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  142 bits (361), Expect = 3e-37
 Identities = 83/481 (17%), Positives = 165/481 (34%), Gaps = 84/481 (17%)

Query: 71  FGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQ 130
           F    L       L     T  +    + L ++ TL              LGI + +  +
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADR----------LGIKSIDGVE 65

Query: 131 NLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPIN-HHLANLR----S 185
            L  L ++   N  L+ +       L  L  L  + +++  +       +L NL      
Sbjct: 66  YLNNLTQINFSNNQLTDI-----TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF 120

Query: 186 HSQF---FFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPK 242
           ++Q      + NL NL  L+LS   +       +  +++L+ L           L     
Sbjct: 121 NNQITDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVT---DLKPLAN 175

Query: 243 NSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSN 302
            + L+ L++++   S I    +  L  L  +   +   +   P     LT L  +  + N
Sbjct: 176 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGN 231

Query: 303 HFSGPIPSFHESRNLNYLDLSSNNLNGV-----------LNLGRNNLNGTLSDIIFPRNC 351
                I +     NL  LDL++N ++ +           L LG N ++  +S +      
Sbjct: 232 QLKD-IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN-ISPLAGLTA- 288

Query: 352 GLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNF 411
            L  L+L+ NQL+ + P  ++N   L  L    N+ISD  P  + + + LQ L   +N  
Sbjct: 289 -LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNN-- 341

Query: 412 SGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRF 471
              +S   +  +   +  +    N+                               +   
Sbjct: 342 --KVSDVSSLANLTNINWLSAGHNQI-------------------------SDLTPLANL 374

Query: 472 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNN 531
             +  L ++  A T +  +   N+    ++      L    PA ++     +  ++++N 
Sbjct: 375 TRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNL 432

Query: 532 L 532
            
Sbjct: 433 P 433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  120 bits (304), Expect = 1e-29
 Identities = 85/427 (19%), Positives = 146/427 (34%), Gaps = 82/427 (19%)

Query: 123 IPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLAN 182
           I        L E  +  L   +++        + + L  +  L      +          
Sbjct: 14  INQIFTDTALAEKMKTVLGKTNVTDT-----VSQTDLDQVTTLQADRLGIKSIDG----- 63

Query: 183 LRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPK 242
                    V  L NLT ++ S   L    P  +  ++ L  + ++ N +    +     
Sbjct: 64  ---------VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI--ADITPLAN 110

Query: 243 NSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSN 302
            + L  L L N   + I  DP+  L  L R++L S + +     S   LT L  + F + 
Sbjct: 111 LTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDISALS--GLTSLQQLSFGNQ 166

Query: 303 HFSGPIPSFHESRNLNYLDLSSNNLNGV-----------LNLGRNNLNGTLSDIIFPRNC 351
                +        L  LD+SSN ++ +           L    N     +SDI      
Sbjct: 167 VTD--LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ----ISDITPLGIL 220

Query: 352 -GLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNN 410
             L  L L+GNQL+ +    LA+   L  LD  NN IS+  P  L   + L  L L +N 
Sbjct: 221 TNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 276

Query: 411 FSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGR 470
               IS          L  ++   N+                          +    +  
Sbjct: 277 ----ISNISPLAGLTALTNLELNENQL-------------------------EDISPISN 307

Query: 471 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYN 530
            K+L  L +  N ++   P    +L +++ L    N +S    + LA+L  ++ L+  +N
Sbjct: 308 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHN 363

Query: 531 NLVGQIP 537
            +    P
Sbjct: 364 QISDLTP 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 81.9 bits (203), Expect = 9e-17
 Identities = 44/259 (16%), Positives = 83/259 (32%), Gaps = 37/259 (14%)

Query: 72  GLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQN 131
            LA+LTNLT L+L++   +   P  +S L +L  L L + +          I N +    
Sbjct: 238 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ----------ISNISPLAG 285

Query: 132 LKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFF 191
           L  L  L L+   L  +       +S L NL  L L    +                   
Sbjct: 286 LTALTNLELNENQLEDI-----SPISNLKNLTYLTLYFNNISDISP-------------- 326

Query: 192 VANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNL 251
           V++L  L  L      +       +  ++ +  L   +N +    L      + +  L L
Sbjct: 327 VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQI--SDLTPLANLTRITQLGL 382

Query: 252 ANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSF 311
            + +++    +    +     V   + +   P   S  +       D + N  S      
Sbjct: 383 NDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATIS--DGGSYTEPDITWNLPSYTNEVS 440

Query: 312 HESRNLNYLDLSSNNLNGV 330
           +       +   +   +G 
Sbjct: 441 YTFSQPVTIGKGTTTFSGT 459

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  133 bits (336), Expect = 1e-34
 Identities = 76/341 (22%), Positives = 137/341 (40%), Gaps = 55/341 (16%)

Query: 72  GLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQN 131
           G+  LTNL YLNL+    T   P  +S+L +L  L + + +          I + +  QN
Sbjct: 61  GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNK----------ITDISALQN 108

Query: 132 LKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFF 191
           L  LRELYL+  ++S +       L+ L  +  LNL +   L  ++              
Sbjct: 109 LTNLRELYLNEDNISDI-----SPLANLTKMYSLNLGANHNLSDLSP------------- 150

Query: 192 VANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNL 251
           ++N+  L  L +++  ++      I  ++ L +L L+YN +    +      + L     
Sbjct: 151 LSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQI--EDISPLASLTSLHYFTA 206

Query: 252 ANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSF 311
                + I   P+  +  L  + + +   T   P +  NL+QL  ++  +N  S  I + 
Sbjct: 207 YVNQITDI--TPVANMTRLNSLKIGNNKITDLSPLA--NLSQLTWLEIGTNQISD-INAV 261

Query: 312 HESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSL 371
            +   L  L++ SN ++ +  L   NL+             L+ L L+ NQL     + +
Sbjct: 262 KDLTKLKMLNVGSNQISDISVLN--NLSQ------------LNSLFLNNNQLGNEDMEVI 307

Query: 372 ANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFS 412
                L  L    NHI+D  P  L + S +      +    
Sbjct: 308 GGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  129 bits (327), Expect = 2e-33
 Identities = 71/410 (17%), Positives = 142/410 (34%), Gaps = 76/410 (18%)

Query: 123 IPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLAN 182
           I       +L E     L    ++ +          L ++  L ++   +       +  
Sbjct: 12  INQIFPDADLAEGIRAVLQKASVTDV-----VTQEELESITKLVVAGEKV-----ASIQG 61

Query: 183 LRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPK 242
           +           L NL  L+L+   +       +  +  L  L +  N +    +     
Sbjct: 62  I---------EYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKI--TDISALQN 108

Query: 243 NSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSN 302
            + L+ L L   + S I   P+  L  +  ++L +        +  +N+T L ++  + +
Sbjct: 109 LTNLRELYLNEDNISDI--SPLANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTES 165

Query: 303 HFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQ 362
                +       +L  L L+ N +  +  L   +L              LH      NQ
Sbjct: 166 KVKD-VTPIANLTDLYSLSLNYNQIEDISPLA--SLTS------------LHYFTAYVNQ 210

Query: 363 LQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNV 422
           +  + P  +AN   L  L   NN I+D  P  L N S L  L + +N  S  I+  ++  
Sbjct: 211 ITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-INAVKDLT 265

Query: 423 SWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHN 482
               L++++  SN+          + +                  +     L +L +++N
Sbjct: 266 K---LKMLNVGSNQI---------SDI----------------SVLNNLSQLNSLFLNNN 297

Query: 483 ALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 532
            L        G L  + +L LS N+++   P  LASL+ +   + +   +
Sbjct: 298 QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  128 bits (323), Expect = 7e-33
 Identities = 58/351 (16%), Positives = 119/351 (33%), Gaps = 49/351 (13%)

Query: 71  FGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQ 130
           F  A+L       L     T  +      L  +  L ++  +          + +    +
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEK----------VASIQGIE 63

Query: 131 NLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPIN-HHLANLRS---- 185
            L  L  L L+   ++ +       LS L  L  L + +  +       +L NLR     
Sbjct: 64  YLTNLEYLNLNGNQITDI-----SPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLN 118

Query: 186 ---HSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPK 242
               S    +ANL  + +L+L            +  ++ L  L ++ + +    +     
Sbjct: 119 EDNISDISPLANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKV--KDVTPIAN 175

Query: 243 NSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSN 302
            + L +L+L       I   P+  L  L          T   P +  N+T+L  +   +N
Sbjct: 176 LTDLYSLSLNYNQIEDI--SPLASLTSLHYFTAYVNQITDITPVA--NMTRLNSLKIGNN 231

Query: 303 HFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQ 362
             +  +        L +L++ +N ++ +  +                   L +L++  NQ
Sbjct: 232 KITD-LSPLANLSQLTWLEIGTNQISDINAVKDLT--------------KLKMLNVGSNQ 276

Query: 363 LQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSG 413
           +  +    L N + L  L   NN + +     +   ++L  L L  N+ + 
Sbjct: 277 ISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  109 bits (276), Expect = 1e-26
 Identities = 64/359 (17%), Positives = 124/359 (34%), Gaps = 59/359 (16%)

Query: 187 SQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYL 246
           +Q F  A+L       L +  +         ++ ++  L ++   +   S+      + L
Sbjct: 13  NQIFPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKV--ASIQGIEYLTNL 68

Query: 247 QNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSG 306
           + LNL     + I   P+  L  LT + + +   T        NLT L  +  + ++ S 
Sbjct: 69  EYLNLNGNQITDI--SPLSNLVKLTNLYIGTNKITDISALQ--NLTNLRELYLNEDNISD 124

Query: 307 PIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGV 366
            I        +  L+L +N+    L+   N                L+ L ++ ++++ V
Sbjct: 125 -ISPLANLTKMYSLNLGANHNLSDLSPLSNMTG-------------LNYLTVTESKVKDV 170

Query: 367 VPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPL 426
            P  +AN   L  L    N I D  P  L + +SL       N  +          +   
Sbjct: 171 TP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVA----NMTR 222

Query: 427 LQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTG 486
           L  +   +NK                               +     L  L +  N ++ 
Sbjct: 223 LNSLKIGNNKITD-------------------------LSPLANLSQLTWLEIGTNQISD 257

Query: 487 SIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKHVLPN 545
              ++  +L +++ L++  N +S  I   L +L+ L+ L L+ N L  +       L N
Sbjct: 258 --INAVKDLTKLKMLNVGSNQIS-DISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTN 312

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 91.1 bits (227), Expect = 3e-20
 Identities = 51/292 (17%), Positives = 94/292 (32%), Gaps = 55/292 (18%)

Query: 246 LQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFS 305
              L       + I PD    L    R  L+  S T  +      L  +  +  +    +
Sbjct: 2   AATLATLPAPINQIFPDAD--LAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKVA 57

Query: 306 GPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQG 365
             I       NL YL+L+ N +  +  L                   L  L +  N++  
Sbjct: 58  S-IQGIEYLTNLEYLNLNGNQITDISPLSNLV--------------KLTNLYIGTNKITD 102

Query: 366 VVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWP 425
               +L N   L+ L    ++ISD  P  L N + +  L L +N+    +S   N     
Sbjct: 103 --ISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTG-- 156

Query: 426 LLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALT 485
            L  +    +K                               +     LY+L++++N + 
Sbjct: 157 -LNYLTVTESKVKD-------------------------VTPIANLTDLYSLSLNYNQIE 190

Query: 486 GSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIP 537
              P    +L  +      +N ++   P  +A++  L+ L +  N +    P
Sbjct: 191 DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP 238

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.7 bits (143), Expect = 2e-09
 Identities = 32/188 (17%), Positives = 58/188 (30%), Gaps = 41/188 (21%)

Query: 352 GLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNF 411
           G   L      +  + P   A+         +   ++D          S+  LV+     
Sbjct: 1   GAATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV 56

Query: 412 SG--HISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMG 469
           +    I Y  N      L+ ++   N+                               + 
Sbjct: 57  ASIQGIEYLTN------LEYLNLNGNQITD-------------------------ISPLS 85

Query: 470 RFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSY 529
               L  L +  N +T    S+  NL  +  L L+ +N+S   P  LA+L  +  LNL  
Sbjct: 86  NLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGA 141

Query: 530 NNLVGQIP 537
           N+ +  + 
Sbjct: 142 NHNLSDLS 149

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  134 bits (338), Expect = 1e-33
 Identities = 74/467 (15%), Positives = 156/467 (33%), Gaps = 58/467 (12%)

Query: 76  LTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKEL 135
              +  L+LS    T     ++ +   L  L L S         R+     + F +L  L
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS--------RINTIEGDAFYSLGSL 76

Query: 136 RELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANL 195
             L L +  LS L +        L +L+ LNL                ++        NL
Sbjct: 77  EHLDLSDNHLSSLSSS---WFGPLSSLKYLNLMGN-----------PYQTLGVTSLFPNL 122

Query: 196 LNLTNLDLSQCDLRGKYPEKILQ-VSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANT 254
            NL  L +   +   +        +++L  L++    L      +      + +L L  +
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182

Query: 255 SFSGILPDPIGILKYLTRVDLRSCS--------FTGPIPTSTTNLTQLFHVDFSSNHFSG 306
             + +L     IL  +  ++LR  +              +S            +   F+ 
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242

Query: 307 PIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGV 366
            +        L+ ++     LNG+ +    + +  +S++       +  L +    L   
Sbjct: 243 LLKLLRYILELSEVEFDDCTLNGLGDF-NPSESDVVSELGKVETVTIRRLHIPQFYLFYD 301

Query: 367 VPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFS-GHISYPRNNVSWP 425
           +    +    ++ +   N+ +      + ++  SL+ L L  N     ++       +WP
Sbjct: 302 LSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP 361

Query: 426 LLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALT 485
            LQ +  + N     + +     L ++                    +L +L++S N   
Sbjct: 362 SLQTLVLSQNHL-RSMQKTGEILLTLK--------------------NLTSLDISRNTFH 400

Query: 486 GSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 532
             +P S    +++  L+LS   +   +   +     L VL++S NNL
Sbjct: 401 -PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNL 443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  120 bits (304), Expect = 3e-29
 Identities = 78/478 (16%), Positives = 145/478 (30%), Gaps = 56/478 (11%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNL 132
           L    NL  L L              SL  L  LDLS           L   + ++F  L
Sbjct: 46  LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN--------HLSSLSSSWFGPL 97

Query: 133 KELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFV 192
             L+ L L       L          L NLQ L + +      I                
Sbjct: 98  SSLKYLNLMGNPYQTL--GVTSLFPNLTNLQTLRIGNVETFSEIRRID-----------F 144

Query: 193 ANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLA 252
           A L +L  L++    LR    + +  +  +  L L  +             S ++ L L 
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204

Query: 253 NTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFS------- 305
           +T+ +     P+ + +  + +   +   +     S   L +L       +          
Sbjct: 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264

Query: 306 -------GPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDL 358
                         E   +  + +   ++                  ++     +  + +
Sbjct: 265 GLGDFNPSESDVVSELGKVETVTIRRLHIP-------QFYLFYDLSTVYSLLEKVKRITV 317

Query: 359 SGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCW---LRNASSLQVLVLRSNNFSGHI 415
             +++  V      +   L+ LD   N + + +           SLQ LVL  N+     
Sbjct: 318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377

Query: 416 SYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRY-QATNKRCRDQATEEMGRFKSL 474
                 ++   L  +D + N F   +   C     MR+   ++         +    ++L
Sbjct: 378 KTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG---IRVVKTCIPQTL 433

Query: 475 YALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 532
             L++S+N L  S       L+    L +S N L   +P   +    L V+ +S N L
Sbjct: 434 EVLDVSNNNLD-SFSLFLPRLQ---ELYISRNKLK-TLPD-ASLFPVLLVMKISRNQL 485

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  116 bits (293), Expect = 7e-28
 Identities = 73/471 (15%), Positives = 136/471 (28%), Gaps = 64/471 (13%)

Query: 73  LANLTNLTYLNLSHCGFTG-EIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQN 131
              L++L YLNL    +    + +   +L  L TL + + E  S             F  
Sbjct: 94  FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR-------RIDFAG 146

Query: 132 LKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFF 191
           L  L EL +  + L      + ++L  + ++  L L        +      L S      
Sbjct: 147 LTSLNELEIKALSLRNY---QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203

Query: 192 VANLLN------LTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSY 245
               L       L   ++S    +  +   +L   +   L      +L+ S   F   + 
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263

Query: 246 LQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFS 305
               +   +    +          + R+ +        + T  + L ++  +   ++   
Sbjct: 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323

Query: 306 G-PIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQ 364
             P       ++L +LDLS N +     L  +   G            L  L LS N L+
Sbjct: 324 LVPCSFSQHLKSLEFLDLSENLMVE-EYLKNSACKGAWPS--------LQTLVLSQNHLR 374

Query: 365 GVVPKSLANCNM--LQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNV 422
            +         +  L  LD   N      P   +    ++ L L S              
Sbjct: 375 SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR---VVKTCI- 429

Query: 423 SWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHN 482
               L+++D ++N                                      L  L +S N
Sbjct: 430 -PQTLEVLDVSNNNL---------------------------DSFSLFLPRLQELYISRN 461

Query: 483 ALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV 533
            L  ++P +      +  + +S N L          L  L  + L  N   
Sbjct: 462 KLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  102 bits (255), Expect = 4e-23
 Identities = 61/383 (15%), Positives = 126/383 (32%), Gaps = 45/383 (11%)

Query: 220 STLETLDLSYNPLLQGSLPNFPKN--SYLQNLNLANTSFSGILPDPIGILKYLTRVDLRS 277
                 D         S  + P    + +++L+L+    + I    +     L  + L+S
Sbjct: 5   DASGVCDGRSR-----SFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS 59

Query: 278 CSFTGPIPTSTTNLTQLFHVDFSSNHFSG-PIPSFHESRNLNYLDLSSNNLNGV------ 330
                    +  +L  L H+D S NH S      F    +L YL+L  N    +      
Sbjct: 60  SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119

Query: 331 --------LNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDF 382
                   L +G       +  I F     L+ L++    L+    +SL +   +  L  
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179

Query: 383 RNNHISDNFPCWLRNASSLQVLVLRSNNFSG-HISYPRNNVSWPLLQIVDFASNKFGGRL 441
             +  +     +    SS++ L LR  N +    S    +     ++ + F  +      
Sbjct: 180 HLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239

Query: 442 SQKCSTTLGMRYQATNKRCRDQATEEMGRFK----------------SLYALNMSHNALT 485
             +    L    + +     D     +G F                 ++  L++    L 
Sbjct: 240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF 299

Query: 486 GSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQI---PTAKHV 542
             + + +  L++++ + +  + +     +    L  L  L+LS N +V +       K  
Sbjct: 300 YDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359

Query: 543 LPN---FNLHRRQLQAMKLIGSS 562
            P+     L +  L++M+  G  
Sbjct: 360 WPSLQTLVLSQNHLRSMQKTGEI 382

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  129 bits (326), Expect = 4e-32
 Identities = 90/504 (17%), Positives = 154/504 (30%), Gaps = 65/504 (12%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNL 132
             +   L  L+LS C           SL  L TL L+   PI   +          F  L
Sbjct: 48  FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NPIQSLALGA-------FSGL 99

Query: 133 KELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLL----LGPINHHLANLR---- 184
             L++L     +L+ L       +  L  L+ LN++  L+    L     +L NL     
Sbjct: 100 SSLQKLVAVETNLASLENF---PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156

Query: 185 --------SHSQFFFVANL-LNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQG 235
                     +    +  + L   +LDLS   +         +   L  L L  N     
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLN 215

Query: 236 SLPNFPKN-SYLQNLNLANTSFSG---ILPDPIGILKYLTRVDLRSCS------FTGPIP 285
            +    +  + L+   L    F     +       L+ L  + +          +   I 
Sbjct: 216 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII 275

Query: 286 TSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGV----------LNLGR 335
                LT +      S      +  F  +    +L+L +                L    
Sbjct: 276 DLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS 334

Query: 336 NNLNGTLSDIIFPRNCGLHILDLSGNQLQ--GVVPKSLANCNMLQVLDFRNNHISDNFPC 393
           N      S++  P    L  LDLS N L   G   +S      L+ LD   N +      
Sbjct: 335 NKGGNAFSEVDLPS---LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSS 390

Query: 394 WLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCS-----TT 448
                  L+ L  + +N    +S     +S   L  +D +        +   +       
Sbjct: 391 NFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449

Query: 449 LGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNL 508
           L M     N    +   +     ++L  L++S   L    P++F +L  ++ L+++ N L
Sbjct: 450 LKMAG---NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506

Query: 509 SGKIPAQLASLNFLSVLNLSYNNL 532
                     L  L  + L  N  
Sbjct: 507 KSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  127 bits (320), Expect = 3e-31
 Identities = 70/356 (19%), Positives = 119/356 (33%), Gaps = 40/356 (11%)

Query: 75  NLTNLTYLNLSHCGFTGEIP-TEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLK 133
               L  L L +   +  +  T I  L  L    L   E  +     L   + +  + L 
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN--EGNLEKFDKSALEGLC 255

Query: 134 ELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVA 193
            L         L     +     + L N+   +L S             +     F +  
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV-----------TIERVKDFSYNF 304

Query: 194 NLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLAN 253
              +L  ++              L++ +L+ L  + N    G+  +      L+ L+L+ 
Sbjct: 305 GWQHLELVNCKFGQFPT------LKLKSLKRLTFTSNKG--GNAFSEVDLPSLEFLDLSR 356

Query: 254 T--SFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSG--PIP 309
              SF G           L  +DL        + ++   L QL H+DF  ++        
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFS 415

Query: 310 SFHESRNLNYLDLSSNNLNG-------------VLNLGRNNLNGTLSDIIFPRNCGLHIL 356
            F   RNL YLD+S  +                VL +  N+        IF     L  L
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475

Query: 357 DLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFS 412
           DLS  QL+ + P +  + + LQVL+  +N +           +SLQ + L +N + 
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  118 bits (297), Expect = 2e-28
 Identities = 103/486 (21%), Positives = 163/486 (33%), Gaps = 76/486 (15%)

Query: 77  TNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELR 136
            +   L+LS             S P L  LDLS  E  +       I +   +Q+L  L 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-------IED-GAYQSLSHLS 79

Query: 137 ELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLR------------ 184
            L L    +  L      A S L +LQ L      L    N  + +L+            
Sbjct: 80  TLILTGNPIQSLALG---AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 185 -SHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLE----TLDLSYNPLLQGSLPN 239
            S     + +NL NL +LDLS   ++  Y   +  +  +     +LDLS NP+       
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196

Query: 240 FPKNSYLQNLNLANTSFSG-ILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVD 298
           F K   L  L L N   S  ++   I  L  L    L    F      +  NL       
Sbjct: 197 F-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF-----RNEGNLE-----K 245

Query: 299 FSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDI------IFPRNCG 352
           F  +   G      E   L YLD   +++  + N   N  + +L  +       F  N G
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG 305

Query: 353 LHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFS 412
              L+L   +        L +   L+ L F +N   + F     +  SL+ L L  N  S
Sbjct: 306 WQHLELVNCKFGQFPTLKLKS---LKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLS 360

Query: 413 GHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFK 472
                 +++     L+ +D + N            T+               +      +
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGV---------ITM---------------SSNFLGLE 396

Query: 473 SLYALNMSHNALTGSIPSS-FGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNN 531
            L  L+  H+ L      S F +L+ +  LD+S  +           L+ L VL ++ N+
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456

Query: 532 LVGQIP 537
                 
Sbjct: 457 FQENFL 462

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  105 bits (265), Expect = 3e-24
 Identities = 90/458 (19%), Positives = 142/458 (31%), Gaps = 92/458 (20%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRL----VTLDLSSREPISGFSWRLGIPNFNF 128
            +NLTNL +L+LS         T++  L ++    ++LDLS   P++             
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS-LNPMNFIQP-------GA 196

Query: 129 FQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQ 188
           F+ ++ L +L L N   S    + C  +  L  L+V  L         N      +    
Sbjct: 197 FKEIR-LHKLTLRNNFDSLNVMKTC--IQGLAGLEVHRLVLGEFRNEGNLE----KFDKS 249

Query: 189 FFFVANLLNLTNLDLSQCDLRGKYPEKILQV-STLETLDLSYNPLLQGSLPNFPKNSYLQ 247
                  L +    L+  D        +    + + +  L    + +  + +F  N   Q
Sbjct: 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQ 307

Query: 248 NLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSG- 306
           +L L N  F      P   LK L R+   S         S  +L  L  +D S N  S  
Sbjct: 308 HLELVNCKFGQF---PTLKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFK 362

Query: 307 --PIPSFHESRNLNYLDLSSNNLNGV------------LNLGRNNLNGTLSDIIFPRNCG 352
                S   + +L YLDLS N +  +            L+   +NL       +F     
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422

Query: 353 LHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNF-PCWLRNASSLQVLVLRSNNF 411
           L  LD+S    +          + L+VL    N   +NF P       +L  L L     
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-- 480

Query: 412 SGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRF 471
                           Q+   +   F                                  
Sbjct: 481 ----------------QLEQLSPTAFNS-------------------------------L 493

Query: 472 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS 509
            SL  LNM+ N L       F  L  ++ + L  N   
Sbjct: 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 84.4 bits (209), Expect = 2e-17
 Identities = 58/271 (21%), Positives = 94/271 (34%), Gaps = 37/271 (13%)

Query: 63  SLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLG 122
           +++ ++         +L  +N     F          L  L  L  +S            
Sbjct: 293 TIERVKDFSYNFGWQHLELVNCKFGQFPT------LKLKSLKRLTFTS----------NK 336

Query: 123 IPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLAN 182
             N     +L  L  L L    LS  G     +     +L+ L+LS              
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ-SDFGTTSLKYLDLSFN-----------G 384

Query: 183 LRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQ-VSTLETLDLSYNPLLQGSLPN-- 239
           + + S  F    L  L +LD    +L+      +   +  L  LD+S+         N  
Sbjct: 385 VITMSSNFL--GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR--VAFNGI 440

Query: 240 FPKNSYLQNLNLANTSFSG-ILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVD 298
           F   S L+ L +A  SF    LPD    L+ LT +DL  C      PT+  +L+ L  ++
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500

Query: 299 FSSNHFSG-PIPSFHESRNLNYLDLSSNNLN 328
            +SN     P   F    +L  + L +N  +
Sbjct: 501 MASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 70.1 bits (172), Expect = 7e-13
 Identities = 49/275 (17%), Positives = 77/275 (28%), Gaps = 75/275 (27%)

Query: 271 TRVDLRSCSFT---GPIPTSTTNLTQLFHVDFSSNHFSG-PIPSFHESRNLNYLDLSSNN 326
                   +F      +P ST NL      D S N        SF     L  LDLS   
Sbjct: 10  ITYQCMELNFYKIPDNLPFSTKNL------DLSFNPLRHLGSYSFFSFPELQVLDLSRCE 63

Query: 327 LNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNH 386
           +             T+ D  +     L  L L+GN +Q +   + +  + LQ L     +
Sbjct: 64  IQ------------TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111

Query: 387 ISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCS 446
           ++      + +  +L+ L +  N        P                            
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQ-SFKLP---------------------------- 142

Query: 447 TTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQ----IESLD 502
                              E      +L  L++S N +     +    L Q      SLD
Sbjct: 143 -------------------EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 503 LSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIP 537
           LS+N ++  I         L  L L  N     + 
Sbjct: 184 LSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVM 217

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 48/230 (20%), Positives = 69/230 (30%), Gaps = 54/230 (23%)

Query: 325 NNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRN 384
              N        N      ++  P +     LDLS N L+ +   S  +   LQVLD   
Sbjct: 6   VVPNITYQCMELNFYKIPDNL--PFS--TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR 61

Query: 385 NHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQK 444
             I        ++ S L  L+L  N                   I   A   F G     
Sbjct: 62  CEIQTIEDGAYQSLSHLSTLILTGN------------------PIQSLALGAFSG----- 98

Query: 445 CSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLS 504
                                       SL  L      L        G+LK ++ L+++
Sbjct: 99  --------------------------LSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132

Query: 505 MNNL-SGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKHVLPNFNLHRRQL 553
            N + S K+P   ++L  L  L+LS N +     T   VL    L    L
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 3/93 (3%)

Query: 469 GRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLS 528
             F  L  L++S   +      ++ +L  + +L L+ N +        + L+ L  L   
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108

Query: 529 YNNLVGQIPTAKHVLPN---FNLHRRQLQAMKL 558
             NL          L      N+    +Q+ KL
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  116 bits (292), Expect = 5e-28
 Identities = 70/430 (16%), Positives = 126/430 (29%), Gaps = 49/430 (11%)

Query: 129 FQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQ 188
            QN    +   + +  L               N++ L+LS   L       LA       
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALAS---LRQSAWNVKELDLSGNPLSQISAADLAPFT---- 58

Query: 189 FFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQN 248
                    L  L+LS   L       +  +STL TLDL+ N      +        ++ 
Sbjct: 59  --------KLELLNLSSNVLYE--TLDLESLSTLRTLDLNNN-----YVQELLVGPSIET 103

Query: 249 LNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSG-- 306
           L+ AN + S +        +    + L +   T          +++ ++D   N      
Sbjct: 104 LHAANNNISRV---SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160

Query: 307 PIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGV 366
                  S  L +L+L  N +              +   +      L  LDLS N+L   
Sbjct: 161 FAELAASSDTLEHLNLQYNFIY------------DVKGQVVFAK--LKTLDLSSNKLA-F 205

Query: 367 VPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPL 426
           +     +   +  +  RNN +       LR + +L+   LR N F    +          
Sbjct: 206 MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQR 263

Query: 427 LQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTG 486
           +Q V   + K     +++  T   + +      C D       R  +L     +  +  G
Sbjct: 264 VQTVAKQTVKKLTGQNEEECTVPTLGHYGAY-CCEDLPAPFADRLIALKRKEHALLSGQG 322

Query: 487 S----IPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKHV 542
           S    +     N  +   +D         I            L      L  Q+   +  
Sbjct: 323 SETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRA 382

Query: 543 LPNFNLHRRQ 552
               +   +Q
Sbjct: 383 HAELDGTLQQ 392

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 99.5 bits (248), Expect = 2e-22
 Identities = 56/469 (11%), Positives = 137/469 (29%), Gaps = 77/469 (16%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNL 132
             +  N+  L+LS    +     +++   +L  L+LSS            +      ++L
Sbjct: 30  RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV----------LYETLDLESL 79

Query: 133 KELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFV 192
             LR L L+N  +          L   P+++ L+ ++         +++ +         
Sbjct: 80  STLRTLDLNNNYVQ--------ELLVGPSIETLHAANN--------NISRVSC------- 116

Query: 193 ANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSY-LQNLNL 251
           +      N+ L+   +           S ++ LDL  N +   +      +S  L++LNL
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 252 ANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSF 311
                  +      +   L  +DL S      +     +   +  +   +N       + 
Sbjct: 177 QYNFIYDV--KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKAL 233

Query: 312 HESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSL 371
             S+NL + DL  N  +                  F +N    +  ++   ++ +  ++ 
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLR-----------DFFSKN--QRVQTVAKQTVKKLTGQNE 280

Query: 372 ANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHI--SYPRNNVSWPLLQI 429
             C +  +  +      D    +     +L+       +  G           +    + 
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQRE 340

Query: 430 VDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIP 489
           +D    ++                       R    +   R ++   L     AL   + 
Sbjct: 341 IDALKEQY-----------------------RTVIDQVTLRKQAKITLEQKKKALDEQVS 377

Query: 490 SSFGNLKQIESLDLSMNNLSG--KIPAQLASLNFLSVLNLSYNNLVGQI 536
           +      +++                 + + L  L  +   Y  +  + 
Sbjct: 378 NGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQ 426

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 85.7 bits (212), Expect = 6e-18
 Identities = 47/342 (13%), Positives = 91/342 (26%), Gaps = 58/342 (16%)

Query: 69  SQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNF 128
           S+   +       + L++   T     +     R+  LDL   E I        +     
Sbjct: 112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-ID------TVNFAEL 164

Query: 129 FQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQ 188
             +   L  L L    +  +     K       L+ L+LSS          LA +     
Sbjct: 165 AASSDTLEHLNLQYNFIYDV-----KGQVVFAKLKTLDLSSN--------KLAFMGPE-- 209

Query: 189 FFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQN 248
                +   +T + L    L     + +     LE  DL  N    G+L +F  +   + 
Sbjct: 210 ---FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRV 264

Query: 249 LNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPI 308
             +A  +   +                     TG      T  T   +  +       P 
Sbjct: 265 QTVAKQTVKKL---------------------TGQNEEECTVPTLGHYGAYCCEDLPAPF 303

Query: 309 PSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVP 368
                   L  L    + L       + +    L      +      +D    Q + V+ 
Sbjct: 304 AD-----RLIALKRKEHALLSG----QGSETERLECERENQA-RQREIDALKEQYRTVID 353

Query: 369 KSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNN 410
           +          L+ +   + +      R  + L   + ++  
Sbjct: 354 QVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG 395

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  103 bits (260), Expect = 1e-24
 Identities = 53/384 (13%), Positives = 108/384 (28%), Gaps = 82/384 (21%)

Query: 159 LPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQ 218
               + L       L P +  L+  +               N D ++         +   
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQR------------HYNADRNRWHS----AWRQAN 54

Query: 219 VSTLETLDLSYNPLLQGSLPNFPKNSY---LQNLNLANTSFSGILPDPIGILKYLTRVDL 275
            +  +    +   L   +  +  +++       L L +       PD    L +L  + +
Sbjct: 55  SNNPQIETRTGRAL--KATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTI 111

Query: 276 RSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVL--NL 333
            +      +P +      L  +  + N       S      L  L + +      L   L
Sbjct: 112 DAAGLME-LPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPL 170

Query: 334 GRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPC 393
              + +G    ++      L  L L    ++  +P S+AN   L+ L  RN+ +S     
Sbjct: 171 ASTDASGEHQGLV-----NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGP 223

Query: 394 WLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRY 453
            + +   L+ L LR      +                                       
Sbjct: 224 AIHHLPKLEELDLRGCTALRNYP------------------------------------- 246

Query: 454 QATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP 513
                          G    L  L +   +   ++P     L Q+E LDL       ++P
Sbjct: 247 ------------PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294

Query: 514 AQLASLNFLSVLNLSYNNLVGQIP 537
           + +A L    ++ +   +L  Q+ 
Sbjct: 295 SLIAQLPANCIILVP-PHLQAQLD 317

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 96.2 bits (240), Expect = 5e-22
 Identities = 51/268 (19%), Positives = 94/268 (35%), Gaps = 22/268 (8%)

Query: 63  SLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLG 122
           +L+        A       L L       + P +   L  L  + + +   +        
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME------- 118

Query: 123 IPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLAN 182
           +P  +  Q    L  L L    L  L      +++ L  L+ L++ +C  L  +   LA+
Sbjct: 119 LP--DTMQQFAGLETLTLARNPLRAL----PASIASLNRLRELSIRACPELTELPEPLAS 172

Query: 183 LRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPK 242
             +  +      L+NL +L L    +R   P  I  +  L++L +  +PL   +L     
Sbjct: 173 TDASGEHQ---GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS--ALGPAIH 226

Query: 243 N-SYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSS 301
           +   L+ L+L   +     P   G    L R+ L+ CS    +P     LTQL  +D   
Sbjct: 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286

Query: 302 NHFSGPIP-SFHESRNLNYLDLSSNNLN 328
                 +P    +      + +  +   
Sbjct: 287 CVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 95.8 bits (239), Expect = 8e-22
 Identities = 58/348 (16%), Positives = 97/348 (27%), Gaps = 59/348 (16%)

Query: 75  NLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKE 134
           + +    L              +S   R    D +                     N   
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQ------------ANSNN 57

Query: 135 LRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVAN 194
            +        L         A    P    L L S          L              
Sbjct: 58  PQIETRTGRALKATADLLEDATQ--PGRVALELRSV--------PLPQFPDQ-----AFR 102

Query: 195 LLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKN-SYLQNLNLAN 253
           L +L ++ +    L  + P+ + Q + LETL L+ NPL   +LP    + + L+ L++  
Sbjct: 103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL--RALPASIASLNRLRELSIRA 159

Query: 254 TSFSGILPDPIG---------ILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHF 304
                 LP+P+           L  L  + L        +P S  NL  L  +   ++  
Sbjct: 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPL 218

Query: 305 SGPIPSFHESRNLNYLDLSSNNLNGVL--NLGRNNLNGTLSDIIFPRNCGLHILDLSG-N 361
           S   P+ H    L  LDL             G                  L  L L   +
Sbjct: 219 SALGPAIHHLPKLEELDLRGCTALRNYPPIFG--GRAP------------LKRLILKDCS 264

Query: 362 QLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSN 409
            L   +P  +     L+ LD R        P  +    +  ++++  +
Sbjct: 265 NLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.9 bits (177), Expect = 7e-14
 Identities = 42/250 (16%), Positives = 77/250 (30%), Gaps = 30/250 (12%)

Query: 309 PSFHESRNLNYLDLSSNN--------LNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSG 360
              H S     L    +         L+        + N   S      +    I   +G
Sbjct: 6   HHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTG 65

Query: 361 NQLQGVVPKSLANCNM--LQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYP 418
             L+      L +        L+ R+  +   FP      S LQ + + +         P
Sbjct: 66  RALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM---ELP 120

Query: 419 RNNVSWPLLQIVDFASNKFG------GRLSQKCSTTLGMRYQATNKR-----CRDQATEE 467
                +  L+ +  A N           L++     L +R                A+ E
Sbjct: 121 DTMQQFAGLETLTLARNPLRALPASIASLNRL--RELSIRACPELTELPEPLASTDASGE 178

Query: 468 MGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNL 527
                +L +L +    +  S+P+S  NL+ ++SL +  + LS  +   +  L  L  L+L
Sbjct: 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDL 236

Query: 528 SYNNLVGQIP 537
                +   P
Sbjct: 237 RGCTALRNYP 246

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 50.3 bits (121), Expect = 8e-07
 Identities = 21/112 (18%), Positives = 34/112 (30%), Gaps = 13/112 (11%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNL 132
           + +L  L  L+L  C      P        L  L L     +      +          L
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH--------RL 276

Query: 133 KELRELYL-DNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANL 183
            +L +L L   V+LS L       ++ LP   ++ +   L      H     
Sbjct: 277 TQLEKLDLRGCVNLSRL----PSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  102 bits (256), Expect = 4e-24
 Identities = 55/287 (19%), Positives = 93/287 (32%), Gaps = 43/287 (14%)

Query: 128 FFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHS 187
             QN    +   + +  L               N++ L+LS   L       LA      
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALAS---LRQSAWNVKELDLSGNPLSQISAADLAPFT--- 58

Query: 188 QFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQ 247
                     L  L+LS   L       +  +STL TLDL+ N +    L   P    ++
Sbjct: 59  ---------KLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV--QELLVGPS---IE 102

Query: 248 NLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSG- 306
            L+ AN + S +        +    + L +   T          +++ ++D   N     
Sbjct: 103 TLHAANNNISRV---SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159

Query: 307 -PIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQG 365
                   S  L +L+L  N +              +   +      L  LDLS N+L  
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIY------------DVKGQVVFAK--LKTLDLSSNKLA- 204

Query: 366 VVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFS 412
            +     +   +  +  RNN +       LR + +L+   LR N F 
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  101 bits (254), Expect = 7e-24
 Identities = 49/339 (14%), Positives = 110/339 (32%), Gaps = 52/339 (15%)

Query: 213 PEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTR 272
            E     +  +   ++ + L Q           ++ L+L+    S I    +     L  
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 273 VDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLN 332
           ++L S      +     +L+ L  +D ++N+            ++  L  ++NN++    
Sbjct: 63  LNLSSNVLYETLDLE--SLSTLRTLDLNNNYVQ----ELLVGPSIETLHAANNNIS---- 112

Query: 333 LGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISD-NF 391
                    +S        G   + L+ N++  +        + +Q LD + N I   NF
Sbjct: 113 --------RVSCSRGQ---GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161

Query: 392 PCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGM 451
                ++ +L+ L L+ N     I   +  V +  L+ +D +SNK            +  
Sbjct: 162 AELAASSDTLEHLNLQYNF----IYDVKGQVVFAKLKTLDLSSNKL---------AFM-- 206

Query: 452 RYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS-G 510
                          E      +  +++ +N L   I  +    + +E  DL  N    G
Sbjct: 207 -------------GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG 252

Query: 511 KIPAQLASLNFLSVLNLSYNNLVGQIPTAKHVLPNFNLH 549
            +    +    +  +       +      +  +P    +
Sbjct: 253 TLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 92.7 bits (231), Expect = 6e-21
 Identities = 47/343 (13%), Positives = 106/343 (30%), Gaps = 39/343 (11%)

Query: 75  NLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKE 134
           N        ++       + +   S   +  LDLS    +S  S               +
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQIS-------AADLAPFTK 59

Query: 135 LRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLG-PINHHLANLR-SHSQFFFV 192
           L  L L +  L          L  L  L+ L+L++  +    +   +  L  +++    V
Sbjct: 60  LELLNLSSNVLYETL-----DLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRV 114

Query: 193 --ANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKN-SYLQNL 249
             +      N+ L+   +           S ++ LDL  N +   +      +   L++L
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 250 NLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIP 309
           NL       +      +   L  +DL S      +     +   +  +   +N       
Sbjct: 175 NLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEK 231

Query: 310 SFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPK 369
           +   S+NL + DL  N  +                  F +N    +  ++   ++ +  +
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLR-----------DFFSKN--QRVQTVAKQTVKKLTGQ 278

Query: 370 SLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFS 412
           +   C +  +  +      D     L    + +++ L  ++  
Sbjct: 279 NEEECTVPTLGHYGAYCCED-----LPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 92.0 bits (229), Expect = 1e-20
 Identities = 44/285 (15%), Positives = 78/285 (27%), Gaps = 49/285 (17%)

Query: 260 LPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSG-PIPSFHESRNLN 318
           + +            +   S    + +   +   +  +D S N  S            L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 319 YLDLSSNNLNGV-----------LNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVV 367
            L+LSSN L              L+L  N +              +  L  + N +  V 
Sbjct: 62  LLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNISRVS 115

Query: 368 PKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLL 427
                     + +   NN I+          S +Q L L+ N     +++     S   L
Sbjct: 116 CSRGQG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTL 171

Query: 428 QIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGS 487
           + ++   N             +                +    F  L  L++S N L   
Sbjct: 172 EHLNLQYNFI---------YDV----------------KGQVVFAKLKTLDLSSNKLA-F 205

Query: 488 IPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 532
           +   F +   +  + L  N L   I   L     L   +L  N  
Sbjct: 206 MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 75.4 bits (186), Expect = 4e-15
 Identities = 49/299 (16%), Positives = 91/299 (30%), Gaps = 45/299 (15%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNL 132
           LA  T L  LNLS      E   ++ SL  L TLDL++                      
Sbjct: 54  LAPFTKLELLNLSSNVLY-ETL-DLESLSTLRTLDLNN-------------NYVQELLVG 98

Query: 133 KELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFV 192
             +  L+  N ++S +      + S     + + L++             +         
Sbjct: 99  PSIETLHAANNNISRV------SCSRGQGKKNIYLANN-----------KITMLRDLDE- 140

Query: 193 ANLLNLTNLDLSQCDLRG-KYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNL 251
                +  LDL   ++    + E      TLE L+L YN +    +      + L+ L+L
Sbjct: 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY--DVKGQVVFAKLKTLDL 198

Query: 252 ANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSF 311
           ++   + +          +T + LR+      I  +      L H D   N F       
Sbjct: 199 SSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD 256

Query: 312 HESRNLNYLDLSSNNLNGV-------LNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQL 363
             S+N     ++   +  +         +      G       P      ++ L  +  
Sbjct: 257 FFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 36/232 (15%), Positives = 63/232 (27%), Gaps = 27/232 (11%)

Query: 69  SQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNF 128
           S+   +       + L++   T     +     R+  LDL   E I        +     
Sbjct: 112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-ID------TVNFAEL 164

Query: 129 FQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQ 188
             +   L  L L    +  +     K       L+ L+LSS          LA +     
Sbjct: 165 AASSDTLEHLNLQYNFIYDV-----KGQVVFAKLKTLDLSSN--------KLAFMGPE-- 209

Query: 189 FFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQN 248
                +   +T + L    L     + +     LE  DL  N    G+L +F  +   + 
Sbjct: 210 ---FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRV 264

Query: 249 LNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFS 300
             +A  +   +           T     +             L  L H    
Sbjct: 265 QTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 9/46 (19%), Positives = 20/46 (43%)

Query: 487 SIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 532
           +I     N  + +   ++ ++L   + +   S   +  L+LS N L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL 46

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  103 bits (258), Expect = 6e-24
 Identities = 62/367 (16%), Positives = 113/367 (30%), Gaps = 73/367 (19%)

Query: 177 NHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGS 236
            H     +     F    L N   +      +R      +     +E L+L+   + +  
Sbjct: 26  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID 85

Query: 237 LPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFH 296
              F     +Q L +   +   + P     +  LT + L     +        N  +L  
Sbjct: 86  TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 145

Query: 297 VDFSSNHFSG-PIPSFHESRNLNYLDLSSNNLNGV----------LNLGRNNLNGTLSDI 345
           +  S+N+       +F  + +L  L LSSN L  V           N+  N L+      
Sbjct: 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS------ 199

Query: 346 IFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLV 405
                  +  LD S N +  V          L +L  ++N+++D    WL N   L  + 
Sbjct: 200 TLAIPIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLTD--TAWLLNYPGLVEVD 254

Query: 406 LRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQAT 465
           L  N                  ++     + F                            
Sbjct: 255 LSYN------------------ELEKIMYHPFVK-------------------------- 270

Query: 466 EEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVL 525
                 + L  L +S+N L  ++      +  ++ LDLS N+L   +       + L  L
Sbjct: 271 -----MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 323

Query: 526 NLSYNNL 532
            L +N++
Sbjct: 324 YLDHNSI 330

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  101 bits (253), Expect = 2e-23
 Identities = 63/339 (18%), Positives = 108/339 (31%), Gaps = 51/339 (15%)

Query: 75  NLTNLTYLNLSHCGFTGEIPTEI-SSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLK 133
            L N   +   +     ++P  +  S  ++  L+L+          ++   +   F    
Sbjct: 43  TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDL--------QIEEIDTYAFAYAH 93

Query: 134 ELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVA 193
            +++LY+    +  L          +P L VL L            L++L          
Sbjct: 94  TIQKLYMGFNAIRYLPPH---VFQNVPLLTVLVLERN--------DLSSLPRGI----FH 138

Query: 194 NLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLAN 253
           N   LT L +S  +L     +     ++L+ L LS N L    L   P    L + N++ 
Sbjct: 139 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS---LFHANVSY 195

Query: 254 TSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHE 313
              S      + I   +  +D    S           LT L       N+ +        
Sbjct: 196 NLLST-----LAIPIAVEELDASHNSINVVRGPVNVELTIL---KLQHNNLT-DTAWLLN 246

Query: 314 SRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLAN 373
              L  +DLS N L              +    F +   L  L +S N+L   +      
Sbjct: 247 YPGLVEVDLSYNELE------------KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQP 293

Query: 374 CNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFS 412
              L+VLD  +NH+             L+ L L  N+  
Sbjct: 294 IPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  100 bits (251), Expect = 4e-23
 Identities = 77/399 (19%), Positives = 132/399 (33%), Gaps = 69/399 (17%)

Query: 129 FQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQ 188
              L   + +   N  +  L       L     +++LNL+           +  + +++ 
Sbjct: 41  DITLNNQKIVTFKNSTMRKLPAA---LLDSFRQVELLNLNDL--------QIEEIDTYA- 88

Query: 189 FFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQN 248
               A    +  L +    +R   P     V  L  L L  N L       F     L  
Sbjct: 89  ---FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 145

Query: 249 LNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPI 308
           L+++N +   I  D       L  + L S   T  +  S   +  LFH + S N     +
Sbjct: 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLS--LIPSLFHANVSYNL----L 198

Query: 309 PSFHESRNLNYLDLSSNNLNGV----------LNLGRNNLNGTLSDIIFPRNC-GLHILD 357
            +      +  LD S N++N V          L L  NNL    +D  +  N  GL  +D
Sbjct: 199 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL----TDTAWLLNYPGLVEVD 254

Query: 358 LSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISY 417
           LS N+L+ ++         L+ L   NN +      + +   +L+VL L  N+       
Sbjct: 255 LSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL---HV 310

Query: 418 PRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYAL 477
            RN   +  L+ +    N            TL                 ++    +L  L
Sbjct: 311 ERNQPQFDRLENLYLDHNSI---------VTL-----------------KLSTHHTLKNL 344

Query: 478 NMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQL 516
            +SHN    +   +    + +    +   +   KI  QL
Sbjct: 345 TLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQL 381

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 95.1 bits (237), Expect = 2e-21
 Identities = 72/342 (21%), Positives = 119/342 (34%), Gaps = 56/342 (16%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEI-SSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQN 131
           L +   +  LNL+      EI T   +    +  L +            +     + FQN
Sbjct: 65  LDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFN--------AIRYLPPHVFQN 115

Query: 132 LKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFF 191
           +  L  L L+  DLS L           P L  L++S+         +L  +   +    
Sbjct: 116 VPLLTVLVLERNDLSSLPRG---IFHNTPKLTTLSMSNN--------NLERIEDDT---- 160

Query: 192 VANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNL 251
                +L NL LS   L       ++   +L   ++SYN      L        ++ L+ 
Sbjct: 161 FQATTSLQNLQLSSNRLT-HVDLSLI--PSLFHANVSYN-----LLSTLAIPIAVEELDA 212

Query: 252 ANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSG-PIPS 310
           ++ S + +      +   LT + L+  + T        N   L  VD S N         
Sbjct: 213 SHNSINVV---RGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP 267

Query: 311 FHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKS 370
           F + + L  L +S+N L          LN     I       L +LDLS N L   V ++
Sbjct: 268 FVKMQRLERLYISNNRL--------VALNLYGQPIP-----TLKVLDLSHNHLL-HVERN 313

Query: 371 LANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFS 412
               + L+ L   +N I       L    +L+ L L  N++ 
Sbjct: 314 QPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 94.7 bits (236), Expect = 4e-21
 Identities = 51/317 (16%), Positives = 111/317 (35%), Gaps = 30/317 (9%)

Query: 230 NPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTT 289
            P  +    N   +    ++++   +           L     V  ++ +          
Sbjct: 7   QPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLD 66

Query: 290 NLTQLFHVDFSSNHFSG-PIPSFHESRNLNYLDLSSNNLNGV-------------LNLGR 335
           +  Q+  ++ +          +F  +  +  L +  N +  +             L L R
Sbjct: 67  SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126

Query: 336 NNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWL 395
           N+L+ +L   IF     L  L +S N L+ +   +      LQ L   +N ++      +
Sbjct: 127 NDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI 185

Query: 396 RNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQA 455
            +   L    +  N  S  ++ P        ++ +D + N     +    +  L +    
Sbjct: 186 PS---LFHANVSYNLLS-TLAIPIA------VEELDASHNSIN-VVRGPVNVELTILKLQ 234

Query: 456 TNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQ 515
            N       T  +  +  L  +++S+N L   +   F  ++++E L +S N L   +   
Sbjct: 235 HN---NLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLY 290

Query: 516 LASLNFLSVLNLSYNNL 532
              +  L VL+LS+N+L
Sbjct: 291 GQPIPTLKVLDLSHNHL 307

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 82.4 bits (204), Expect = 5e-17
 Identities = 58/319 (18%), Positives = 99/319 (31%), Gaps = 61/319 (19%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEI-SSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQN 131
             N+  LT L L     +  +P  I  + P+L TL +S+          L     + FQ 
Sbjct: 113 FQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNN--------NLERIEDDTFQA 163

Query: 132 LKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFF 191
              L+ L L +  L+ +       LS +P+L   N+                 S++    
Sbjct: 164 TTSLQNLQLSSNRLTHV------DLSLIPSLFHANV-----------------SYNLLST 200

Query: 192 VANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNL 251
           +A  + +  LD S   +       +     L  L L +N L             L  ++L
Sbjct: 201 LAIPIAVEELDASHNSIN-VVRGPVNV--ELTILKLQHNNLT--DTAWLLNYPGLVEVDL 255

Query: 252 ANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSF 311
           +      I+  P   ++ L R+ + +      +      +  L  +D S NH      + 
Sbjct: 256 SYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQ 314

Query: 312 HESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSL 371
            +   L  L L  N++             TL          L  L LS N          
Sbjct: 315 PQFDRLENLYLDHNSIV------------TLKLSTHH---TLKNLTLSHNDWDC------ 353

Query: 372 ANCNMLQVLDFRNNHISDN 390
            N       +     + D 
Sbjct: 354 -NSLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 40/209 (19%), Positives = 72/209 (34%), Gaps = 40/209 (19%)

Query: 69  SQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNF 128
           +   L+ + +L + N+S+        + ++    +  LD S           + +     
Sbjct: 178 THVDLSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHN--------SINVVRGPV 224

Query: 129 FQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQ 188
                 L  L L + +L+         L   P L  ++LS         + L  +  H  
Sbjct: 225 NVE---LTILKLQHNNLTDTA-----WLLNYPGLVEVDLS--------YNELEKIMYHP- 267

Query: 189 FFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLP-NFPKNSYLQ 247
                 +  L  L +S   L          + TL+ LDLS+N LL   +  N P+   L+
Sbjct: 268 ---FVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL--HVERNQPQFDRLE 321

Query: 248 NLNLANTSFSGILPDPIGILKYLTRVDLR 276
           NL L + S   +    +     L  + L 
Sbjct: 322 NLYLDHNSIVTL---KLSTHHTLKNLTLS 347

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  103 bits (258), Expect = 1e-23
 Identities = 61/341 (17%), Positives = 112/341 (32%), Gaps = 60/341 (17%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNL 132
            A+  +L  L L+           +S++                            F NL
Sbjct: 52  FASFPHLEELELNEN--------IVSAVEP------------------------GAFNNL 79

Query: 133 KELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFV 192
             LR L L +  L  +        + L NL  L++S           +  L  +      
Sbjct: 80  FNLRTLGLRSNRLKLIPLG---VFTGLSNLTKLDISEN--------KIVILLDYM----F 124

Query: 193 ANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLA 252
            +L NL +L++   DL          +++LE L L    L             L  L L 
Sbjct: 125 QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184

Query: 253 NTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSG-PIPSF 311
           + + + I       L  L  +++    +   +  +      L  +  +  + +  P  + 
Sbjct: 185 HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV 244

Query: 312 HESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSL 371
                L +L+LS N ++            T+   +      L  + L G QL  V P + 
Sbjct: 245 RHLVYLRFLNLSYNPIS------------TIEGSMLHELLRLQEIQLVGGQLAVVEPYAF 292

Query: 372 ANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFS 412
              N L+VL+   N ++        +  +L+ L+L SN  +
Sbjct: 293 RGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  102 bits (255), Expect = 3e-23
 Identities = 66/362 (18%), Positives = 112/362 (30%), Gaps = 62/362 (17%)

Query: 77  TNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELR 136
           T    L+L           E +S P L  L+L+    +S       +     F NL  LR
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSA------VEP-GAFNNLFNLR 83

Query: 137 ELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLL 196
            L L +  L  +        + L NL  L++S           +  L  +       +L 
Sbjct: 84  TLGLRSNRLKLIPLG---VFTGLSNLTKLDISEN--------KIVILLDYM----FQDLY 128

Query: 197 NLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSF 256
           NL +L++   DL          +++LE L L    L             L  L L + + 
Sbjct: 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188

Query: 257 SGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRN 316
           + I       L  L  +++    +   +                 N   G         N
Sbjct: 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMT---------------PNCLYGL--------N 225

Query: 317 LNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNM 376
           L  L ++  NL              +  +       L  L+LS N +  +    L     
Sbjct: 226 LTSLSITHCNLT------------AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR 273

Query: 377 LQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNV-SWPLLQIVDFASN 435
           LQ +      ++   P   R  + L+VL +  N  +   +   +   S   L+ +   SN
Sbjct: 274 LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT---TLEESVFHSVGNLETLILDSN 330

Query: 436 KF 437
             
Sbjct: 331 PL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  101 bits (253), Expect = 6e-23
 Identities = 62/324 (19%), Positives = 111/324 (34%), Gaps = 45/324 (13%)

Query: 224 TLDLSYNPLLQGSLP-NFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTG 282
            +       +  ++P   P     + L+L       +  D      +L  ++L     + 
Sbjct: 15  AVLCHRKRFV--AVPEGIPTE--TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA 70

Query: 283 PIPTSTTNLTQLFHVDFSSNHFSG-PIPSFHESRNLNYLDLSSNNLNGV----------- 330
             P +  NL  L  +   SN     P+  F    NL  LD+S N +  +           
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130

Query: 331 --LNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHIS 388
             L +G N+L   +S   F     L  L L    L  +  ++L++ + L VL  R+ +I+
Sbjct: 131 KSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189

Query: 389 DNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTT 448
                  +    L+VL +    +   +    N +    L  +                T 
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLDTM--TPNCLYGLNLTSLSITHCNL---------TA 238

Query: 449 LGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNL 508
           +                  +     L  LN+S+N ++    S    L +++ + L    L
Sbjct: 239 V--------------PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284

Query: 509 SGKIPAQLASLNFLSVLNLSYNNL 532
           +   P     LN+L VLN+S N L
Sbjct: 285 AVVEPYAFRGLNYLRVLNVSGNQL 308

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 70.5 bits (173), Expect = 5e-13
 Identities = 43/257 (16%), Positives = 69/257 (26%), Gaps = 68/257 (26%)

Query: 284 IPTSTTNLTQLFHVDFSSNHFSG-PIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTL 342
           IPT T  L      D   N         F    +L  L+L+ N +              +
Sbjct: 30  IPTETRLL------DLGKNRIKTLNQDEFASFPHLEELELNENIV------------SAV 71

Query: 343 SDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQ 402
               F     L  L L  N+L+ +        + L  LD   N I        ++  +L+
Sbjct: 72  EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK 131

Query: 403 VLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRD 462
            L +  N                   +V  +   F G                       
Sbjct: 132 SLEVGDN------------------DLVYISHRAFSG----------------------- 150

Query: 463 QATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFL 522
                     SL  L +    LT     +  +L  +  L L   N++         L  L
Sbjct: 151 --------LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRL 202

Query: 523 SVLNLSYNNLVGQIPTA 539
            VL +S+   +  +   
Sbjct: 203 KVLEISHWPYLDTMTPN 219

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 27/184 (14%), Positives = 45/184 (24%), Gaps = 52/184 (28%)

Query: 350 NCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSN 409
           +     +     +    VP+ +      ++LD   N I         +   L+ L L  N
Sbjct: 10  SAQDRAVLCHRKRFV-AVPEGI-PTE-TRLLDLGKNRIKTLNQDEFASFPHLEELELNEN 66

Query: 410 NFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMG 469
                              +       F                                
Sbjct: 67  ------------------IVSAVEPGAFNN------------------------------ 78

Query: 470 RFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSY 529
              +L  L +  N L       F  L  +  LD+S N +   +      L  L  L +  
Sbjct: 79  -LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 137

Query: 530 NNLV 533
           N+LV
Sbjct: 138 NDLV 141

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  100 bits (251), Expect = 9e-23
 Identities = 91/489 (18%), Positives = 165/489 (33%), Gaps = 86/489 (17%)

Query: 77  TNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELR 136
              T LN+S    +    ++I SL +L  L +S          R+   + + F+  +EL 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHN--------RIQYLDISVFKFNQELE 72

Query: 137 ELYLDNVDLSGLGTERCKALSF--LPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVAN 194
            L L +  L          +S     NL+ L+LS                +        N
Sbjct: 73  YLDLSHNKL--------VKISCHPTVNLKHLDLSFN-----------AFDALPICKEFGN 113

Query: 195 LLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLA-- 252
           +  L  L LS   L       I  ++  + L +      +   P   ++   ++L++   
Sbjct: 114 MSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173

Query: 253 -NTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQ-----------LFHVDFS 300
            N  F  IL   +  +  L   +++            + L +           L +++ +
Sbjct: 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233

Query: 301 SNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLG-----------------RNNLNGTLS 343
            N F   I        + Y  +S+  L G L+                    +++ G   
Sbjct: 234 WNSFIR-ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQ 292

Query: 344 DIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQV 403
             I+     ++I + + +  + V     +  +    LDF NN ++D       + + L+ 
Sbjct: 293 SYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELET 352

Query: 404 LVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQ 463
           L+L+ N                 LQ +D + N       +   +                
Sbjct: 353 LILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT-------------- 398

Query: 464 ATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLS 523
                   KSL +LNMS N LT +I        +I+ LDL  N +   IP Q+  L  L 
Sbjct: 399 --------KSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQ 447

Query: 524 VLNLSYNNL 532
            LN++ N L
Sbjct: 448 ELNVASNQL 456

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 74.5 bits (183), Expect = 3e-14
 Identities = 42/353 (11%), Positives = 94/353 (26%), Gaps = 26/353 (7%)

Query: 220 STLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCS 279
                L++S N + +    +    S L+ L +++     +        + L  +DL    
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 280 FTGPIPTSTTNLTQLFHVDFSSNHFS--GPIPSFHESRNLNYLDLSSNNLNGV------- 330
                   T NL  L   D S N F        F     L +L LS+ +L          
Sbjct: 81  LVKISCHPTVNLKHL---DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 331 ---LNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHI 387
                +                    +   L            + + ++  V +   ++I
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197

Query: 388 SDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWP-LLQIVDFASNKFGGRLSQKCS 446
                    +     +  L++N    +++      +W   ++I+    +      S    
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257

Query: 447 TTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMN 506
              G                     K+L    +  +         +     +   + +++
Sbjct: 258 KLQGQLDFRDFDYSGTS-------LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS 310

Query: 507 NLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKHVLPN---FNLHRRQLQAM 556
                     + ++    L+ S N L   +      L       L   QL+ +
Sbjct: 311 GTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL 363

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 67.2 bits (164), Expect = 5e-12
 Identities = 50/284 (17%), Positives = 92/284 (32%), Gaps = 35/284 (12%)

Query: 54  RLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEI-----SSLPRLVTLDL 108
            L   +   +         L   T + Y ++S+    G++         +SL  L    +
Sbjct: 224 NLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQV 283

Query: 109 SSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLS 168
            S           G P    ++    +         +SG         S +     L+ S
Sbjct: 284 VSD--------VFGFPQSYIYEIFSNMNIKNFT---VSGTRMVHMLCPSKISPFLHLDFS 332

Query: 169 SCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLR--GKYPEKILQVSTLETLD 226
           +            NL + + F    +L  L  L L    L+   K  E   Q+ +L+ LD
Sbjct: 333 N------------NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380

Query: 227 LSYNPLLQGSLPN-FPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIP 285
           +S N +              L +LN+++   +  +     +   +  +DL S      IP
Sbjct: 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR--CLPPRIKVLDLHSNKIKS-IP 437

Query: 286 TSTTNLTQLFHVDFSSNHFSG-PIPSFHESRNLNYLDLSSNNLN 328
                L  L  ++ +SN     P   F    +L  + L +N  +
Sbjct: 438 KQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 64.1 bits (156), Expect = 6e-11
 Identities = 46/286 (16%), Positives = 97/286 (33%), Gaps = 26/286 (9%)

Query: 263 PIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSG-PIPSFHESRNLNYLD 321
           P  + +  T +++     +    +   +L++L  +  S N      I  F  ++ L YLD
Sbjct: 16  PKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLD 75

Query: 322 LSSNNLNGV----------LNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSL 371
           LS N L  +          L+L  N  +       F     L  L LS   L+      +
Sbjct: 76  LSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPI 135

Query: 372 ANCNMLQV-LDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIV 430
           A+ N+ +V L     +     P  L++ ++  + ++   N   H     +  +   L++ 
Sbjct: 136 AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195

Query: 431 DFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPS 490
           +        + S   S    ++            T       +L  +  + N+       
Sbjct: 196 NIKCVLEDNKCSYFLSILAKLQ------------TNPKLSNLTLNNIETTWNSFIR--IL 241

Query: 491 SFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQI 536
                  +    +S   L G++  +    +  S+  LS + +V  +
Sbjct: 242 QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV 287

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  100 bits (249), Expect = 2e-22
 Identities = 64/339 (18%), Positives = 109/339 (32%), Gaps = 51/339 (15%)

Query: 75  NLTNLTYLNLSHCGFTGEIPTEI-SSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLK 133
            L N   +   +     ++P  +  S  ++  L+L+          ++   +   F    
Sbjct: 49  TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDL--------QIEEIDTYAFAYAH 99

Query: 134 ELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVA 193
            +++LY+    +  L          +P L VL L              +L S  +  F  
Sbjct: 100 TIQKLYMGFNAIRYLPPH---VFQNVPLLTVLVLERN-----------DLSSLPRGIF-H 144

Query: 194 NLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLAN 253
           N   LT L +S  +L     +     ++L+ L LS N L    L   P    L + N++ 
Sbjct: 145 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS---LFHANVSY 201

Query: 254 TSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHE 313
              S      + I   +  +D    S           LT L       N+ +        
Sbjct: 202 NLLST-----LAIPIAVEELDASHNSINVVRGPVNVELTIL---KLQHNNLT-DTAWLLN 252

Query: 314 SRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLAN 373
              L  +DLS N L              +    F +   L  L +S N+L   +      
Sbjct: 253 YPGLVEVDLSYNELE------------KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQP 299

Query: 374 CNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFS 412
              L+VLD  +NH+             L+ L L  N+  
Sbjct: 300 IPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 99.2 bits (247), Expect = 4e-22
 Identities = 83/450 (18%), Positives = 142/450 (31%), Gaps = 67/450 (14%)

Query: 123 IPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLAN 182
           +        L   + +   N  +  L       L     +++LNL+           +  
Sbjct: 41  VYFGFEDITLNNQKIVTFKNSTMRKLPAA---LLDSFRQVELLNLNDL--------QIEE 89

Query: 183 LRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPK 242
           + +++     A    +  L +    +R   P     V  L  L L  N L       F  
Sbjct: 90  IDTYA----FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145

Query: 243 NSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSN 302
              L  L+++N +   I  D       L  + L S   T  +  S   +  LFH + S N
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLS--LIPSLFHANVSYN 202

Query: 303 HFSGPIPSFHESRNLNYLDLSSNNLNGV----------LNLGRNNLNGTLSDIIFPRNCG 352
             S    +      +  LD S N++N V          L L  NNL  T          G
Sbjct: 203 LLS----TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAW---LLNYPG 255

Query: 353 LHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFS 412
           L  +DLS N+L+ ++         L+ L   NN +      + +   +L+VL L  N+  
Sbjct: 256 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 314

Query: 413 GHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFK 472
                 RN   +  L+ +    N            TL                 ++    
Sbjct: 315 ---HVERNQPQFDRLENLYLDHNSI---------VTL-----------------KLSTHH 345

Query: 473 SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 532
           +L  L +SHN    +   +    + +    +   +   KI  QL         +  Y + 
Sbjct: 346 TLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDR 403

Query: 533 VGQIPTAKHVLPNFNLHRRQLQAMKLIGSS 562
           + Q      V+      + +  A   I S 
Sbjct: 404 LLQYIALTSVVEKVQRAQGRCSATDTINSV 433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 94.2 bits (234), Expect = 2e-20
 Identities = 50/308 (16%), Positives = 109/308 (35%), Gaps = 30/308 (9%)

Query: 239 NFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVD 298
           N   +    ++++   +           L     V  ++ +          +  Q+  ++
Sbjct: 22  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 81

Query: 299 FSSNHFSG-PIPSFHESRNLNYLDLSSNNLNGV-------------LNLGRNNLNGTLSD 344
            +          +F  +  +  L +  N +  +             L L RN+L+ +L  
Sbjct: 82  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPR 140

Query: 345 IIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVL 404
            IF     L  L +S N L+ +   +      LQ L   +N ++      + +   L   
Sbjct: 141 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS---LFHA 197

Query: 405 VLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQA 464
            +  N  S  ++ P        ++ +D + N     +    +  L +     N       
Sbjct: 198 NVSYNLLS-TLAIPIA------VEELDASHNSI-NVVRGPVNVELTILKLQHN---NLTD 246

Query: 465 TEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSV 524
           T  +  +  L  +++S+N L   +   F  ++++E L +S N L   +      +  L V
Sbjct: 247 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKV 305

Query: 525 LNLSYNNL 532
           L+LS+N+L
Sbjct: 306 LDLSHNHL 313

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.0 bits (140), Expect = 5e-09
 Identities = 40/250 (16%), Positives = 71/250 (28%), Gaps = 65/250 (26%)

Query: 284 IPTSTTNLTQLFHVDFSSNHFSGP-IPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTL 342
           I ++       + V                   N   +   ++ +              L
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR------------KL 66

Query: 343 SDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQ 402
              +      + +L+L+  Q++ +   + A  + +Q L    N I    P   +N   L 
Sbjct: 67  PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126

Query: 403 VLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRD 462
           VLVL  N                   +       F                         
Sbjct: 127 VLVLERN------------------DLSSLPRGIFHN----------------------- 145

Query: 463 QATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFL 522
                      L  L+MS+N L      +F     +++L LS N L+  +   L+ +  L
Sbjct: 146 --------TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSL 194

Query: 523 SVLNLSYNNL 532
              N+SYN L
Sbjct: 195 FHANVSYNLL 204

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 55.3 bits (133), Expect = 4e-08
 Identities = 48/341 (14%), Positives = 96/341 (28%), Gaps = 46/341 (13%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNL 132
               T+L  L LS    T  +   +S +P L   ++S                 +     
Sbjct: 167 FQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYN-------------LLSTLAIP 210

Query: 133 KELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFV 192
             + EL   +  ++ +             L +L L              NL   +     
Sbjct: 211 IAVEELDASHNSINVVRGP------VNVELTILKLQHN-----------NLTDTAWL--- 250

Query: 193 ANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN-FPKNSYLQNLNL 251
            N   L  +DLS  +L        +++  LE L +S N L   +L         L+ L+L
Sbjct: 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL--VALNLYGQPIPTLKVLDL 308

Query: 252 ANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSF 311
           ++     +          L  + L   S    +  ST     L ++  S N +       
Sbjct: 309 SHNHLLHV-ERNQPQFDRLENLYLDHNSIV-TLKLST--HHTLKNLTLSHNDWD-CNSLR 363

Query: 312 HESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSL 371
              RN+    +   + +    +     +G              +  ++   +   V ++ 
Sbjct: 364 ALFRNVARPAVDDADQH--CKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQ 421

Query: 372 ANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFS 412
             C+    ++   +                + L    N   
Sbjct: 422 GRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELR 462

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.9 bits (124), Expect = 4e-07
 Identities = 40/210 (19%), Positives = 72/210 (34%), Gaps = 40/210 (19%)

Query: 69  SQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNF 128
           +   L+ + +L + N+S+        + ++    +  LD S           + +     
Sbjct: 184 THVDLSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHN--------SINVVRGPV 230

Query: 129 FQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQ 188
                 L  L L + +L+         L   P L  ++LS   L   + H    ++    
Sbjct: 231 NVE---LTILKLQHNNLTDTA-----WLLNYPGLVEVDLSYNELEKIMYHPFVKMQ---- 278

Query: 189 FFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLP-NFPKNSYLQ 247
                    L  L +S   L          + TL+ LDLS+N LL   +  N P+   L+
Sbjct: 279 --------RLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL--HVERNQPQFDRLE 327

Query: 248 NLNLANTSFSGILPDPIGILKYLTRVDLRS 277
           NL L + S   +    +     L  + L  
Sbjct: 328 NLYLDHNSIVTL---KLSTHHTLKNLTLSH 354

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 95.6 bits (238), Expect = 3e-21
 Identities = 72/364 (19%), Positives = 129/364 (35%), Gaps = 58/364 (15%)

Query: 74  ANLTNLTYLNLSHCGFTGEIPTEI-SSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNL 132
             L++L  L L +  F  ++ T   + L  L  L L+             +   NFF+ L
Sbjct: 76  RGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAV-----LSG-NFFKPL 128

Query: 133 KELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLS----SCL----LLGPINHHLANLR 184
             L  L L + ++  +          +    VL+L+      +    LL     H   LR
Sbjct: 129 TSLEMLVLRDNNIKKIQPAS--FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR 186

Query: 185 SHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPL---LQGSLPNFP 241
                     L ++T  D+++  L  +      + +++ TLDLS N     +     +  
Sbjct: 187 ----------LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI 236

Query: 242 KNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSS 301
             + +Q+L L+N        +      +    D  + +F G   +           D S 
Sbjct: 237 AGTKIQSLILSN------SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTC------DLSK 284

Query: 302 NHFSG-PIPSFHESRNLNYLDLSSNNLN-------------GVLNLGRNNLNGTLSDIIF 347
           +         F    +L  L L+ N +N               LNL +N L G++   +F
Sbjct: 285 SKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMF 343

Query: 348 PRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLR 407
                L +LDLS N ++ +  +S      L+ L    N +           +SLQ + L 
Sbjct: 344 ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 403

Query: 408 SNNF 411
           +N +
Sbjct: 404 TNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 83.3 bits (206), Expect = 3e-17
 Identities = 82/441 (18%), Positives = 139/441 (31%), Gaps = 72/441 (16%)

Query: 77  TNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELR 136
            ++ Y++LS         T  S L  L  L +  + P       L I N N F+ L  L 
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP------GLVIRN-NTFRGLSSLI 82

Query: 137 ELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLL 196
            L LD      L T    A + L NL+VL L+ C L G +             FF   L 
Sbjct: 83  ILKLDYNQFLQLETG---AFNGLANLEVLTLTQCNLDGAVLSG---------NFF-KPLT 129

Query: 197 NLTNLDLSQCDLRGKYPEKILQ-VSTLETLDLSYNPL--LQGSLPNFPKNSYLQNLNLAN 253
           +L  L L   +++   P      +     LDL++N +  +        +  +   L L++
Sbjct: 130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189

Query: 254 TSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPS--F 311
            +                  D+           +    T +  +D S N F   +    F
Sbjct: 190 ITLQ----------------DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF 233

Query: 312 HESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPR--NCGLHILDLSGNQLQGVVPK 369
                     L  +N   + +   +       +  F      G+   DLS +++  ++  
Sbjct: 234 DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS 293

Query: 370 SLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSW-PLLQ 428
             ++   L+ L    N I+          + L  L L  N      S           L+
Sbjct: 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG---SIDSRMFENLDKLE 350

Query: 429 IVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSI 488
           ++D + N     L  +    L                       +L  L +  N L  S+
Sbjct: 351 VLDLSYNHI-RALGDQSFLGL----------------------PNLKELALDTNQLK-SV 386

Query: 489 PSS-FGNLKQIESLDLSMNNL 508
           P   F  L  ++ + L  N  
Sbjct: 387 PDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 81.7 bits (202), Expect = 1e-16
 Identities = 65/326 (19%), Positives = 115/326 (35%), Gaps = 43/326 (13%)

Query: 236 SLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTST-TNLTQL 294
            +P  P +  +  ++L+  S + +       L+ L  + +   +    I  +T   L+ L
Sbjct: 24  QVPELPAH--VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSL 81

Query: 295 FHVDFSSNHFSG-PIPSFHESRNLNYLDLSSNNLNGV---------------LNLGRNNL 338
             +    N F      +F+   NL  L L+  NL+G                L L  NN+
Sbjct: 82  IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI 141

Query: 339 NGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNM--LQVLDFRNNHISDNFPCWL- 395
                   F      H+LDL+ N+++ +  + L N       +L   +  + D    WL 
Sbjct: 142 KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG 201

Query: 396 -------RNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTT 448
                     +S+  L L  N F                +  D  +      L    S  
Sbjct: 202 WEKCGNPFKNTSITTLDLSGNGFK----------ESMAKRFFDAIAGTKIQSLILSNSYN 251

Query: 449 LGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNN 507
           +G  +  TN +  D  T +      +   ++S + +  ++    F +   +E L L+ N 
Sbjct: 252 MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNE 310

Query: 508 LSGKIPAQ-LASLNFLSVLNLSYNNL 532
           ++ KI       L  L  LNLS N L
Sbjct: 311 IN-KIDDNAFWGLTHLLKLNLSQNFL 335

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 66.7 bits (163), Expect = 7e-12
 Identities = 47/278 (16%), Positives = 85/278 (30%), Gaps = 34/278 (12%)

Query: 271 TRVDLRSCSFTG--PIPTSTTNLTQLFHVDFSSNHFSG-PIPSFHESRNLNYLDLSSNNL 327
                 +        +P     +      D S N  +     SF   ++L +L +     
Sbjct: 13  YNAICINRGLHQVPELPAHVNYV------DLSLNSIAELNETSFSRLQDLQFLKVEQQTP 66

Query: 328 NGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHI 387
             V+               F     L IL L  NQ   +   +      L+VL     ++
Sbjct: 67  GLVIRNN-----------TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNL 115

Query: 388 SDNF--PCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFG------- 438
                   + +  +SL++LVLR NN    I      ++     ++D   NK         
Sbjct: 116 DGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174

Query: 439 GRLSQKCSTTLGMRY-QATNKRCRDQATEEMGRF---KSLYALNMSHNALTGSIPSSFGN 494
                K  T L +      +        E+ G      S+  L++S N    S+   F +
Sbjct: 175 LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD 234

Query: 495 LKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 532
                 +   + + S  + +     NF    N ++  L
Sbjct: 235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGL 272

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 65.2 bits (159), Expect = 2e-11
 Identities = 47/272 (17%), Positives = 85/272 (31%), Gaps = 11/272 (4%)

Query: 64  LQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLP--RLVTLDLSSREPISGFSWRL 121
           ++ +Q      N+     L+L+          ++ +        L LSS        + L
Sbjct: 141 IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWL 200

Query: 122 GIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLA 181
           G            +  L L          +R         +Q L LS+   +G    H  
Sbjct: 201 GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260

Query: 182 NLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQ-VSTLETLDLSYNPLLQGSLPN- 239
                +  F       +   DLS+  +     + +    + LE L L+ N +    + + 
Sbjct: 261 FKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEI--NKIDDN 317

Query: 240 -FPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTST-TNLTQLFHV 297
            F   ++L  LNL+      I       L  L  +DL        +   +   L  L  +
Sbjct: 318 AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKEL 376

Query: 298 DFSSNHF-SGPIPSFHESRNLNYLDLSSNNLN 328
              +N   S P   F    +L  + L +N  +
Sbjct: 377 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 93.1 bits (232), Expect = 2e-20
 Identities = 79/489 (16%), Positives = 154/489 (31%), Gaps = 95/489 (19%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNL 132
             N+ + T    +   +    P        +    L                        
Sbjct: 30  AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD-------------------CLD 70

Query: 133 KELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFV 192
           ++  EL L+N+ LS L           P+L+ L  S    L  +     +L+S       
Sbjct: 71  RQAHELELNNLGLSSLPEL-------PPHLESLVASCN-SLTELPELPQSLKSLLVDNNN 122

Query: 193 ANLL-----NLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQ 247
              L      L  L +S   L  K PE +   S L+ +D+  N L    LP+ P +  L+
Sbjct: 123 LKALSDLPPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSL--KKLPDLPPS--LE 176

Query: 248 NLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGP 307
            +   N     +    +  L +LT +   + S    +P    +L  +      +N     
Sbjct: 177 FIAAGNNQLEEL--PELQNLPFLTAIYADNNSLKK-LPDLPLSLESI---VAGNNILEE- 229

Query: 308 IPSFHESRNLNYLDLSSNNLNGV---------LNLGRNNLN------GTLSDIIFPRNC- 351
           +P       L  +   +N L  +         LN+  N L        +L+ +    N  
Sbjct: 230 LPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIF 289

Query: 352 --------GLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQV 403
                    L+ L+ S N+++  +     +   L+ L+  NN + +  P        L+ 
Sbjct: 290 SGLSELPPNLYYLNASSNEIR-SLCDLPPS---LEELNVSNNKLIE-LPALPPR---LER 341

Query: 404 LVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQ 463
           L+   N+ +     P+N      L+ +    N       ++            + R    
Sbjct: 342 LIASFNHLAEVPELPQN------LKQLHVEYNPL-----REFPDIPE---SVEDLRMNSH 387

Query: 464 ATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLS 523
             E     ++L  L++  N L    P    ++   E L ++   +         + + L 
Sbjct: 388 LAEVPELPQNLKQLHVETNPLR-EFPDIPESV---EDLRMNSERVVDPYEFAHETTDKLE 443

Query: 524 VLNLSYNNL 532
                +++ 
Sbjct: 444 DDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 92.4 bits (230), Expect = 4e-20
 Identities = 74/459 (16%), Positives = 136/459 (29%), Gaps = 97/459 (21%)

Query: 74  ANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLK 133
            + T L          T E+P E  ++        +  E         G         L+
Sbjct: 8   VSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 134 ELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVA 193
           +  +     ++L+ LG      LS LP                                 
Sbjct: 67  DCLDRQAHELELNNLG------LSSLP--------------------------------E 88

Query: 194 NLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLAN 253
              +L +L  S   L  + PE    + +L   + +       +L + P    L+ L ++N
Sbjct: 89  LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLK-----ALSDLPPL--LEYLGVSN 140

Query: 254 TSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHE 313
                +    +    +L  +D+ + S    +P    +L  +      +N     +P    
Sbjct: 141 NQLEKL--PELQNSSFLKIIDVDNNSLKK-LPDLPPSLEFI---AAGNNQLEE-LPELQN 193

Query: 314 SRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLAN 373
              L  +   +N+L                  +      L  +    N L+      L N
Sbjct: 194 LPFLTAIYADNNSLKK----------------LPDLPLSLESIVAGNNILE--ELPELQN 235

Query: 374 CNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFA 433
              L  +   NN +    P    +   L+ L +R N  +     P    S   L + +  
Sbjct: 236 LPFLTTIYADNNLLK-TLPDLPPS---LEALNVRDNYLT---DLPELPQSLTFLDVSENI 288

Query: 434 SNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFG 493
            +                          ++         SL  LN+S+N L   +P+   
Sbjct: 289 FSGLSELPPNLYYLNAS----------SNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP 337

Query: 494 NLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 532
            L   E L  S N+L+ ++P    +   L  L++ YN L
Sbjct: 338 RL---ERLIASFNHLA-EVPELPQN---LKQLHVEYNPL 369

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 88.9 bits (221), Expect = 5e-19
 Identities = 86/453 (18%), Positives = 141/453 (31%), Gaps = 104/453 (22%)

Query: 74  ANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRL--------GIPN 125
               +L  L  S    T E+P    SL  L+  + + +  +S     L         +  
Sbjct: 88  ELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA-LSDLPPLLEYLGVSNNQLEK 145

Query: 126 FNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRS 185
               QN   L+ + +DN  L  L           P+L+ +   +  L             
Sbjct: 146 LPELQNSSFLKIIDVDNNSLKKL-------PDLPPSLEFIAAGNNQL------------- 185

Query: 186 HSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSY 245
             +   + NL  LT +      L+ K P+  L    LE++    N L    LP      +
Sbjct: 186 -EELPELQNLPFLTAIYADNNSLK-KLPDLPLS---LESIVAGNNIL--EELPELQNLPF 238

Query: 246 LQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFS 305
           L  +   N      LPD    L+ L   D         +P    +LT L   D S N FS
Sbjct: 239 LTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTD----LPELPQSLTFL---DVSENIFS 290

Query: 306 GPIPSFHESRNLNYLDLSSNNLNG---------VLNLGRNNLNGTLSDIIFPRNCGLHIL 356
           G +       NL YL+ SSN +            LN+  N L       +      L  L
Sbjct: 291 G-LSELPP--NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-----ELPALPPRLERL 342

Query: 357 DLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHIS 416
             S N L   VP+   N   L+ L    N +   FP    +   L++    +++ +    
Sbjct: 343 IASFNHLA-EVPELPQN---LKQLHVEYNPLR-EFPDIPESVEDLRM----NSHLAEVPE 393

Query: 417 YPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYA 476
            P+N      L+ +   +N                              +      S+  
Sbjct: 394 LPQN------LKQLHVETNPL---------REF---------------PDIPE---SVED 420

Query: 477 LNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS 509
           L M+   +      +     ++E      ++  
Sbjct: 421 LRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 87.7 bits (218), Expect = 1e-18
 Identities = 58/353 (16%), Positives = 118/353 (33%), Gaps = 61/353 (17%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNL 132
           L N + L  +++ +     ++P      P L  +   +            +      QNL
Sbjct: 149 LQNSSFLKIIDVDNNSLK-KLP---DLPPSLEFIAAGN----------NQLEELPELQNL 194

Query: 133 KELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLG-PINHHLANLR----SHS 187
             L  +Y DN  L  L            +L+ +   + +L   P   +L  L      ++
Sbjct: 195 PFLTAIYADNNSLKKLPDL-------PLSLESIVAGNNILEELPELQNLPFLTTIYADNN 247

Query: 188 QFFFVANLL-NLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYL 246
               + +L  +L  L++    L    PE    ++ L+  +  ++      L   P N  L
Sbjct: 248 LLKTLPDLPPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFS-----GLSELPPN--L 299

Query: 247 QNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSG 306
             LN ++     +      +   L  +++ +      +P     L +L     S NH + 
Sbjct: 300 YYLNASSNEIRSL----CDLPPSLEELNVSNNKLIE-LPALPPRLERL---IASFNHLAE 351

Query: 307 PIPSFHESRNLNYLDLSSNNLN-------GVLNLGRNNLNGTLSDIIFPRNCGLHILDLS 359
            +P     +NL  L +  N L         V +L  N+    + ++       L  L + 
Sbjct: 352 -VPE--LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELP----QNLKQLHVE 404

Query: 360 GNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFS 412
            N L+   P    +   ++ L   +  + D +         L+  V   ++  
Sbjct: 405 TNPLR-EFPDIPES---VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 77.7 bits (192), Expect = 2e-15
 Identities = 53/351 (15%), Positives = 114/351 (32%), Gaps = 67/351 (19%)

Query: 193 ANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLA 252
            +   L        +L  + P +   V +      +++   + + P   +   +    L 
Sbjct: 8   VSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL- 65

Query: 253 NTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFH 312
                        + +    ++L +   +  +P    +L  L     S N  +       
Sbjct: 66  ----------RDCLDRQAHELELNNLGLS-SLPELPPHLESL---VASCNSLTELPELPQ 111

Query: 313 ESRNLNYLDLSSNNLNGV------LNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGV 366
             ++L   + +   L+ +      L +  N L   L ++       L I+D+  N L+  
Sbjct: 112 SLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE-KLPELQNSSF--LKIIDVDNNSLK-K 167

Query: 367 VPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPL 426
           +P    +   L+ +   NN + +  P  L+N   L  +   +N+       P +      
Sbjct: 168 LPDLPPS---LEFIAAGNNQLEE-LPE-LQNLPFLTAIYADNNSLKKLPDLPLS------ 216

Query: 427 LQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTG 486
           L+ +   +N             L                 E+     L  +   +N L  
Sbjct: 217 LESIVAGNNIL---------EEL----------------PELQNLPFLTTIYADNNLLK- 250

Query: 487 SIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIP 537
           ++P    +L+   +L++  N L+  +P    SL FL V    ++ L    P
Sbjct: 251 TLPDLPPSLE---ALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 92.3 bits (229), Expect = 8e-20
 Identities = 72/379 (18%), Positives = 113/379 (29%), Gaps = 72/379 (18%)

Query: 74  ANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLK 133
                   LN+   G T  +P  +     + TL +      S       +P         
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLTS-------LPA-----LPP 81

Query: 134 ELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVA 193
           ELR L +    L+ L          L  L + +     L                    A
Sbjct: 82  ELRTLEVSGNQLTSLPVL----PPGLLELSIFSNPLTHL-------------------PA 118

Query: 194 NLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLAN 253
               L  L +    L    P        L+ L +S N L   SLP  P    L  L   N
Sbjct: 119 LPSGLCKLWIFGNQLT-SLPVLPPG---LQELSVSDNQL--ASLPALPSE--LCKLWAYN 170

Query: 254 TSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHE 313
              +  LP     L+ L    +        +PT  + L +L      +N  +  +P+   
Sbjct: 171 NQLTS-LPMLPSGLQEL---SVSDNQLAS-LPTLPSELYKL---WAYNNRLT-SLPA--L 219

Query: 314 SRNLNYLDLSSNNLNGV---------LNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQ 364
              L  L +S N L  +         L +  N L  +L  +      GL  L +  NQL 
Sbjct: 220 PSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLT-SLPMLP----SGLLSLSVYRNQLT 274

Query: 365 GVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSW 424
             +P+SL + +    ++   N +S+     LR  +S          F    +        
Sbjct: 275 -RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRA 333

Query: 425 PLLQIVDFASNKFGGRLSQ 443
             L   D+      G  + 
Sbjct: 334 LHLAAADWLVPAREGEPAP 352

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 91.5 bits (227), Expect = 1e-19
 Identities = 69/364 (18%), Positives = 118/364 (32%), Gaps = 77/364 (21%)

Query: 197 NLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSF 256
               L++ +  L    P+ +     + TL +  N L   SLP  P    L+ L ++    
Sbjct: 41  GNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT--SLPALPPE--LRTLEVSGNQL 93

Query: 257 SGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRN 316
           +  LP     L  L+            +P   + L +L       N  +  +P       
Sbjct: 94  T-SLPVLPPGLLELSIFSNPLTH----LPALPSGLCKL---WIFGNQLTS-LPV--LPPG 142

Query: 317 LNYLDLSSNNLNGV---------LNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVV 367
           L  L +S N L  +         L    N L  +L  +      GL  L +S NQL   +
Sbjct: 143 LQELSVSDNQLASLPALPSELCKLWAYNNQLT-SLPMLP----SGLQELSVSDNQLA-SL 196

Query: 368 PKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLL 427
           P   +    L  L   NN ++   P      S L+ L++  N  +     P        L
Sbjct: 197 PTLPSE---LYKLWAYNNRLTS-LPALP---SGLKELIVSGNRLTSLPVLPSE------L 243

Query: 428 QIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGS 487
           + +  + N+          T+L                        L +L++  N LT  
Sbjct: 244 KELMVSGNRL---------TSLP---------------MLPS---GLLSLSVYRNQLT-R 275

Query: 488 IPSSFGNLKQIESLDLSMNNLS---GKIPAQLASLNFLSVLNLSYNNLVGQIPTAKHVLP 544
           +P S  +L    +++L  N LS    +   ++ S    S   + ++      P     L 
Sbjct: 276 LPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALH 335

Query: 545 NFNL 548
               
Sbjct: 336 LAAA 339

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 66.8 bits (163), Expect = 8e-12
 Identities = 52/252 (20%), Positives = 82/252 (32%), Gaps = 47/252 (18%)

Query: 315 RNLNYLDLSSNNLNGV----------LNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQ 364
                L++  + L  +          L +  NNL  +L  +       L  L++SGNQL 
Sbjct: 40  NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLT-SLPALP----PELRTLEVSGNQLT 94

Query: 365 GVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSW 424
             +P        L +      H+           S L  L +  N  +   S P      
Sbjct: 95  -SLPVLPPGLLELSIFSNPLTHLPALP-------SGLCKLWIFGNQLT---SLPV---LP 140

Query: 425 PLLQIVDFASNKFGGRLSQKCS-TTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNA 483
           P LQ +  + N+     +       L       N     Q T        L  L++S N 
Sbjct: 141 PGLQELSVSDNQLASLPALPSELCKLWAYN---N-----QLTSLPMLPSGLQELSVSDNQ 192

Query: 484 LTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKHVL 543
           L  S+P+    L     L    N L+  +PA  +    L  L +S N L   +P     L
Sbjct: 193 LA-SLPTLPSEL---YKLWAYNNRLT-SLPALPSG---LKELIVSGNRL-TSLPVLPSEL 243

Query: 544 PNFNLHRRQLQA 555
               +   +L +
Sbjct: 244 KELMVSGNRLTS 255

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 66.1 bits (161), Expect = 1e-11
 Identities = 53/274 (19%), Positives = 87/274 (31%), Gaps = 38/274 (13%)

Query: 76  LTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKEL 135
            + L  L +     T  +P     L     L +S  +  S       +P         EL
Sbjct: 120 PSGLCKLWIFGNQLT-SLPVLPPGL---QELSVSDNQLAS-------LPA-----LPSEL 163

Query: 136 RELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLL--LGPINHHLANLR-SHSQFFFV 192
            +L+  N  L+ L             LQ L++S   L  L  +   L  L   +++   +
Sbjct: 164 CKLWAYNNQLTSLPML-------PSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSL 216

Query: 193 ANLL-NLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNL 251
             L   L  L +S   L    P      S L+ L +S N L   SLP  P    L +L++
Sbjct: 217 PALPSGLKELIVSGNRLTS-LPVLP---SELKELMVSGNRL--TSLPMLPSG--LLSLSV 268

Query: 252 ANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSF 311
                +  LP+ +  L   T V+L     +     +   +T      +S       +   
Sbjct: 269 YRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALREITSA--PGYSGPIIRFDMAGA 325

Query: 312 HESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDI 345
              R    L L++ +       G           
Sbjct: 326 SAPRETRALHLAAADWLVPAREGEPAPADRWHMF 359

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.8 bits (142), Expect = 3e-09
 Identities = 37/198 (18%), Positives = 63/198 (31%), Gaps = 28/198 (14%)

Query: 335 RNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCW 394
                  +  +    N G  +L++  + L   +P  L     +  L   +N+++   P  
Sbjct: 24  SRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLPAH--ITTLVIPDNNLTS-LPAL 79

Query: 395 LRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQ 454
                 L+ L +  N  +   S P        L I            S  C   +     
Sbjct: 80  PPE---LRTLEVSGNQLT---SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIF---- 129

Query: 455 ATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPA 514
                  +Q T        L  L++S N L  S+P+    L     L    N L+  +P 
Sbjct: 130 ------GNQLTSLPVLPPGLQELSVSDNQLA-SLPALPSELC---KLWAYNNQLT-SLPM 178

Query: 515 QLASLNFLSVLNLSYNNL 532
             + L     L++S N L
Sbjct: 179 LPSGLQ---ELSVSDNQL 193

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.5 bits (131), Expect = 6e-08
 Identities = 33/221 (14%), Positives = 64/221 (28%), Gaps = 42/221 (19%)

Query: 74  ANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLK 133
              + L  L++S       +PT  S L +L   +               +P         
Sbjct: 178 MLPSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTS----------LPA-----LPS 221

Query: 134 ELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVA 193
            L+EL +    L+ L             L+ L +S           L +L          
Sbjct: 222 GLKELIVSGNRLTSLPVL-------PSELKELMVSGN--------RLTSLP--------M 258

Query: 194 NLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLAN 253
               L +L + +  L  + PE ++ +S+  T++L  NPL + +L    + +     +   
Sbjct: 259 LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPI 317

Query: 254 TSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQL 294
             F           + L      +               + 
Sbjct: 318 IRFDMAGASAPRETRALH--LAAADWLVPAREGEPAPADRW 356

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 86.6 bits (215), Expect = 1e-18
 Identities = 56/259 (21%), Positives = 89/259 (34%), Gaps = 26/259 (10%)

Query: 197 NLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN--FPKNSYLQNLNLANT 254
           +   LDL    +          +  L TL L  N +    +    F     L+ L L+  
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI--SKISPGAFAPLVKLERLYLSKN 110

Query: 255 SFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHF-SGPIPS--F 311
               +   P  + K L  + +     T    +    L Q+  V+  +N   S  I +  F
Sbjct: 111 QLKEL---PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167

Query: 312 HESRNLNYLDLSSNNLNGV----------LNLGRNNLNGTLSDIIFPRNCGLHILDLSGN 361
              + L+Y+ ++  N+  +          L+L  N +   +          L  L LS N
Sbjct: 168 QGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFN 226

Query: 362 QLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFS----GHISY 417
            +  V   SLAN   L+ L   NN +    P  L +   +QV+ L +NN S         
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285

Query: 418 PRNNVSWPLLQIVDFASNK 436
           P  N        V   SN 
Sbjct: 286 PGYNTKKASYSGVSLFSNP 304

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 80.8 bits (200), Expect = 8e-17
 Identities = 54/303 (17%), Positives = 95/303 (31%), Gaps = 52/303 (17%)

Query: 263 PIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSG-PIPSFHESRNLNYLD 321
           P  +      +DL++   T        NL  L  +   +N  S     +F     L  L 
Sbjct: 47  PKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106

Query: 322 LSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLD 381
           LS N L              L + +      L  L +  N++  V        N + V++
Sbjct: 107 LSKNQLK------------ELPEKMPK---TLQELRVHENEITKVRKSVFNGLNQMIVVE 151

Query: 382 FRNNHISDNF--PCWLRNASSLQVLVLRSNNFSGHISY--PRNNVSWPLLQIVDFASNKF 437
              N +  +       +    L  + +   N +  I    P +      L  +    NK 
Sbjct: 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPS------LTELHLDGNKI 204

Query: 438 GGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQ 497
                    T +                  +    +L  L +S N+++     S  N   
Sbjct: 205 ---------TKVD--------------AASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241

Query: 498 IESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKHVLPNFNLHRRQLQAMK 557
           +  L L+ N L  K+P  LA   ++ V+ L  NN+   I +     P +N  +     + 
Sbjct: 242 LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVS 299

Query: 558 LIG 560
           L  
Sbjct: 300 LFS 302

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 77.7 bits (192), Expect = 9e-16
 Identities = 51/315 (16%), Positives = 98/315 (31%), Gaps = 43/315 (13%)

Query: 77  TNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELR 136
            +   L+L +   T     +  +L  L TL L + + IS       I     F  L +L 
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISK------ISP-GAFAPLVKLE 103

Query: 137 ELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLL 196
            LYL    L  L  +          LQ L +            +  +R      F   L 
Sbjct: 104 RLYLSKNQLKELPEK------MPKTLQELRVHEN--------EITKVRKSV---F-NGLN 145

Query: 197 NLTNLDLSQCDLRGKY-PEKILQ-VSTLETLDLSYNPL--LQGSLPNFPKNSYLQNLNLA 252
            +  ++L    L+         Q +  L  + ++   +  +   LP       L  L+L 
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP-----PSLTELHLD 200

Query: 253 NTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFH 312
               + +    +  L  L ++ L   S +     S  N   L  +  ++N          
Sbjct: 201 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA 260

Query: 313 ESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQ--GVVPKS 370
           + + +  + L +NN++ +        N         +      + L  N +Q   + P +
Sbjct: 261 DHKYIQVVYLHNNNISAI------GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 314

Query: 371 LANCNMLQVLDFRNN 385
                +   +   N 
Sbjct: 315 FRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 77.3 bits (191), Expect = 1e-15
 Identities = 64/344 (18%), Positives = 116/344 (33%), Gaps = 58/344 (16%)

Query: 78  NLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRE 137
           +L  +  S  G   ++P ++   P    LDL + + I+       I +   F+NLK L  
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNK-ITE------IKD-GDFKNLKNLHT 80

Query: 138 LYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLN 197
           L L N  +S +      A + L  L+ L LS         + L  L              
Sbjct: 81  LILINNKISKISP---GAFAPLVKLERLYLS--------KNQLKELPEKM-------PKT 122

Query: 198 LTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN--FPKNSYLQNLNLANTS 255
           L  L + + ++          ++ +  ++L  NPL    + N  F     L  + +A+T+
Sbjct: 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182

Query: 256 FSGILPDPIGILKYLTRVDLRSCSFTGPIPTST-TNLTQLFHVDFSSNHFSG-PIPSFHE 313
            + I   P G+   LT + L     T  +  ++   L  L  +  S N  S     S   
Sbjct: 183 ITTI---PQGLPPSLTELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238

Query: 314 SRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGV------V 367
           + +L  L L++N L  V                   +  + ++ L  N +  +       
Sbjct: 239 TPHLRELHLNNNKLVKV-------------PGGLADHKYIQVVYLHNNNISAIGSNDFCP 285

Query: 368 PKSLANCNMLQVLDFRNNHISDNF--PCWLRNASSLQVLVLRSN 409
           P           +   +N +      P   R       + L + 
Sbjct: 286 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 76.2 bits (188), Expect = 3e-15
 Identities = 54/333 (16%), Positives = 96/333 (28%), Gaps = 82/333 (24%)

Query: 222 LETLDLSYNPLLQGSLP-NFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSF 280
           L  +  S   L    +P + P +     L+L N   + I       LK L  + L +   
Sbjct: 33  LRVVQCSDLGLE--KVPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 281 TGPIPTSTTNLTQLFHVDFSSNHFSG-PIPSFHESRNLNYLDLSSNNLNGV--------- 330
           +   P +   L +L  +  S N     P       + L  L +  N +  V         
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLN 145

Query: 331 ----LNLGRNNL-NGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNN 385
               + LG N L +  + +  F     L  + ++   +  +      +   L  L    N
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS---LTELHLDGN 202

Query: 386 HISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKC 445
            I+      L+  ++L  L L  N                   I    +           
Sbjct: 203 KITKVDAASLKGLNNLAKLGLSFN------------------SISAVDNGSLAN------ 238

Query: 446 STTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSM 505
                                       L  L++++N L   +P    + K I+ + L  
Sbjct: 239 -------------------------TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHN 272

Query: 506 NNLSG------KIPAQLASLNFLSVLNLSYNNL 532
           NN+S         P         S ++L  N +
Sbjct: 273 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 45/296 (15%), Positives = 95/296 (32%), Gaps = 45/296 (15%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNL 132
             NL NL  L L +   +   P   + L +L  L LS          +L        +  
Sbjct: 72  FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN--------QLKELPEKMPKT- 122

Query: 133 KELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFV 192
             L+EL +   +++ +        + L  + V+ L +       N  L +    +  F  
Sbjct: 123 --LQELRVHENEITKVRKS---VFNGLNQMIVVELGT-------N-PLKSSGIENGAF-- 167

Query: 193 ANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLA 252
             +  L+ + ++  ++    P+ +    +L  L L  N + +    +    + L  L L+
Sbjct: 168 QGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224

Query: 253 NTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFS------- 305
             S S +    +    +L  + L +      +P    +   +  V   +N+ S       
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDF 283

Query: 306 GPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGN 361
            P     +  + + + L SN +              +    F        + L   
Sbjct: 284 CPPGYNTKKASYSGVSLFSNPVQ----------YWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 59/283 (20%), Positives = 91/283 (32%), Gaps = 56/283 (19%)

Query: 269 YLTRVDLRSCSFT---GPIPTSTTNLTQLFHVDFSSNHFSG-PIPSFHESRNLNYLDLSS 324
           +L  V             +P  T  L      D  +N  +      F   +NL+ L L +
Sbjct: 32  HLRVVQCSDLGLEKVPKDLPPDTALL------DLQNNKITEIKDGDFKNLKNLHTLILIN 85

Query: 325 NNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRN 384
           N ++             +S   F     L  L LS NQL+ +  K       LQ L    
Sbjct: 86  NKIS------------KISPGAFAPLVKLERLYLSKNQLKELPEKMPKT---LQELRVHE 130

Query: 385 NHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPL--LQIVDFASNKFGGRLS 442
           N I+          + + V+ L +N      S   N     +  L  +  A         
Sbjct: 131 NEITKVRKSVFNGLNQMIVVELGTNPLK--SSGIENGAFQGMKKLSYIRIADTNI----- 183

Query: 443 QKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLD 502
               TT+                   G   SL  L++  N +T    +S   L  +  L 
Sbjct: 184 ----TTI-----------------PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 222

Query: 503 LSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKHVLPN 545
           LS N++S      LA+   L  L+L+ N LV ++P        
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKY 264

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 82.8 bits (205), Expect = 1e-17
 Identities = 53/314 (16%), Positives = 104/314 (33%), Gaps = 50/314 (15%)

Query: 131 NLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFF 190
            L    ++     +++   T      + L  +  L+     +       +  +       
Sbjct: 17  ALANAIKIAAGKSNVTDTVT-----QADLDGITTLSAFGTGV-----TTIEGV------- 59

Query: 191 FVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLN 250
               L NL  L+L    +       +  ++ +  L+LS NPL   ++        ++ L+
Sbjct: 60  --QYLNNLIGLELKDNQITD--LAPLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLD 113

Query: 251 LANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPS 310
           L +T  + +   P+  L  L  + L     T   P +   LT L ++   +   S  +  
Sbjct: 114 LTSTQITDV--TPLAGLSNLQVLYLDLNQITNISPLA--GLTNLQYLSIGNAQVSD-LTP 168

Query: 311 FHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKS 370
                 L  L    N ++ +  L                   L  + L  NQ+  V    
Sbjct: 169 LANLSKLTTLKADDNKISDISPLASLP--------------NLIEVHLKNNQISDV--SP 212

Query: 371 LANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNN------FSGHISYPRNNVSW 424
           LAN + L ++   N  I++    +  N     V+   S         S + +Y   N++W
Sbjct: 213 LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTW 272

Query: 425 PLLQIVDFASNKFG 438
            L   ++  S  F 
Sbjct: 273 NLTSFINNVSYTFN 286

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 79.7 bits (197), Expect = 1e-16
 Identities = 53/268 (19%), Positives = 87/268 (32%), Gaps = 40/268 (14%)

Query: 71  FGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQ 130
           F    L N   +       T  +    + L  + TL               G+      Q
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGT----------GVTTIEGVQ 60

Query: 131 NLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFF 190
            L  L  L L +  ++ L       L  L  +  L LS   L                  
Sbjct: 61  YLNNLIGLELKDNQITDL-----APLKNLTKITELELSGNPL--------------KNVS 101

Query: 191 FVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLN 250
            +A L ++  LDL+   +    P   L  S L+ L L  N +   ++      + LQ L+
Sbjct: 102 AIAGLQSIKTLDLTSTQITDVTPLAGL--SNLQVLYLDLNQI--TNISPLAGLTNLQYLS 157

Query: 251 LANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPS 310
           + N   S +   P+  L  LT +       +   P +  +L  L  V   +N  S  +  
Sbjct: 158 IGNAQVSDL--TPLANLSKLTTLKADDNKISDISPLA--SLPNLIEVHLKNNQISD-VSP 212

Query: 311 FHESRNLNYLDLSSNNLNGVLNLGRNNL 338
              + NL  + L++  +        NNL
Sbjct: 213 LANTSNLFIVTLTNQTITNQPVFYNNNL 240

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 76.7 bits (189), Expect = 1e-15
 Identities = 46/253 (18%), Positives = 90/253 (35%), Gaps = 29/253 (11%)

Query: 187 SQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYL 246
           +  F    L N   +   + ++          +  + TL      +   ++      + L
Sbjct: 10  NVIFPDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGV--TTIEGVQYLNNL 65

Query: 247 QNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSG 306
             L L +   + +   P+  L  +T ++L           +   L  +  +D +S   + 
Sbjct: 66  IGLELKDNQITDL--APLKNLTKITELELSGNPLKNVSAIA--GLQSIKTLDLTSTQITD 121

Query: 307 PIPSFHESRNLNYLDLSSNNLNGV-----------LNLGRNNLNGTLSDIIFPRNC-GLH 354
            +       NL  L L  N +  +           L++G       +SD+    N   L 
Sbjct: 122 -VTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQ----VSDLTPLANLSKLT 176

Query: 355 ILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGH 414
            L    N++  + P  LA+   L  +  +NN ISD  P  L N S+L ++ L +   +  
Sbjct: 177 TLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ 232

Query: 415 ISYPRNNVSWPLL 427
             +  NN+  P +
Sbjct: 233 PVFYNNNLVVPNV 245

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 65.5 bits (160), Expect = 8e-12
 Identities = 57/296 (19%), Positives = 101/296 (34%), Gaps = 56/296 (18%)

Query: 253 NTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFH 312
            T+ + I PDP   L    ++     + T  +  +  +L  +  +       +  I    
Sbjct: 6   PTAINVIFPDPA--LANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTT-IEGVQ 60

Query: 313 ESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLA 372
              NL  L+L  N +  +  L                   +  L+LSGN L+ V   ++A
Sbjct: 61  YLNNLIGLELKDNQITDLAPLKNLTK--------------ITELELSGNPLKNV--SAIA 104

Query: 373 NCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDF 432
               ++ LD  +  I+D  P  L   S+LQVL L  N     I+          LQ +  
Sbjct: 105 GLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQ----ITNISPLAGLTNLQYLSI 158

Query: 433 ASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSF 492
            + +          + L                  +     L  L    N ++  I S  
Sbjct: 159 GNAQV---------SDL----------------TPLANLSKLTTLKADDNKIS-DI-SPL 191

Query: 493 GNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKHVLPNFNL 548
            +L  +  + L  N +S   P  LA+ + L ++ L+   +  Q     + L   N+
Sbjct: 192 ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNV 245

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 50/312 (16%), Positives = 96/312 (30%), Gaps = 78/312 (25%)

Query: 222 LETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFT 281
              +    + +             +  L+   T  + I  + +  L  L  ++L+    T
Sbjct: 21  AIKIAAGKSNV--TDTVTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQIT 76

Query: 282 GPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGT 341
              P    NLT++  ++ S N     + +    +++  LDL+S  +  V  L    L+  
Sbjct: 77  DLAPLK--NLTKITELELSGNPLKN-VSAIAGLQSIKTLDLTSTQITDVTPL--AGLSN- 130

Query: 342 LSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSL 401
                      L +L L  NQ+  + P  LA    LQ L   N  +SD  P  L N S L
Sbjct: 131 -----------LQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKL 175

Query: 402 QVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCR 461
             L    N                  +I D                              
Sbjct: 176 TTLKADDN------------------KISDI----------------------------- 188

Query: 462 DQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNF 521
                 +    +L  +++ +N ++    S   N   +  + L+   ++ +      +L  
Sbjct: 189 ----SPLASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTITNQPVFYNNNLVV 242

Query: 522 LSVLNLSYNNLV 533
            +V+       +
Sbjct: 243 PNVVKGPSGAPI 254

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 38/198 (19%), Positives = 71/198 (35%), Gaps = 42/198 (21%)

Query: 72  GLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQN 131
            LA LTNL YL++ +   +   P  +++L +L TL     +          I + +   +
Sbjct: 146 PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK----------ISDISPLAS 193

Query: 132 LKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFF 191
           L  L E++L N  +S +       L+   NL ++ L++  +      +  NL        
Sbjct: 194 LPNLIEVHLKNNQISDV-----SPLANTSNLFIVTLTNQTITNQPVFYNNNLVV------ 242

Query: 192 VANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKN-----SYL 246
                 +     +        P  I    T  + +L++N      L +F  N     +  
Sbjct: 243 ---PNVVKGPSGAPIA-----PATISDNGTYASPNLTWN------LTSFINNVSYTFNQS 288

Query: 247 QNLNLANTSFSGILPDPI 264
                    FSG +  P+
Sbjct: 289 VTFKNTTVPFSGTVTQPL 306

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 84.2 bits (208), Expect = 2e-17
 Identities = 82/470 (17%), Positives = 147/470 (31%), Gaps = 70/470 (14%)

Query: 75  NLTNLTYLNLSHCGFTGEIPTEI-SSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLK 133
            L+ L  L LSH      +   +      L  LD+S     +       I        + 
Sbjct: 74  FLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQN-------IS----CCPMA 121

Query: 134 ELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVA 193
            LR L L   D   L    CK    L  L  L LS+           A  R         
Sbjct: 122 SLRHLDLSFNDFDVLP--VCKEFGNLTKLTFLGLSA-----------AKFRQLDLLPVAH 168

Query: 194 NLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLAN 253
             L+   LDL    ++G    + LQ+     L L ++P    S+      + L +L L+N
Sbjct: 169 LHLSCILLDLVSYHIKG-GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN 227

Query: 254 TSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTN----------LTQLFHVDFSSNH 303
              +      +              + T     +T               + +++  +  
Sbjct: 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287

Query: 304 FSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQL 363
            +  I    +     Y + +  +L  + ++          + ++     ++I  LS +  
Sbjct: 288 ITERI----DREEFTYSETALKSLM-IEHVKNQVFL-FSKEALYSVFAEMNIKMLSISDT 341

Query: 364 QGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVS 423
             +      + +    L+F  N  +D+          LQ L+L+ N             +
Sbjct: 342 PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN 401

Query: 424 WPLLQIVDFASNKFG-GRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHN 482
              L+ +D + N        + C+    +                         LN+S N
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILV-----------------------LNLSSN 438

Query: 483 ALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 532
            LTGS+        +++ LDL  N +   IP  +  L  L  LN++ N L
Sbjct: 439 MLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 78.4 bits (193), Expect = 2e-15
 Identities = 67/370 (18%), Positives = 122/370 (32%), Gaps = 37/370 (10%)

Query: 75  NLTNLTYLNLSHCGFTGEIPTEISSLP-RLVTLDLSSREPISGFSWRLGIPNFN----FF 129
           NLT LT+L LS   F       ++ L    + LDL S     G +  L IPN       F
Sbjct: 144 NLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203

Query: 130 QNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLA------NL 183
                       +V+  G        L+     +++   S L  GP   ++         
Sbjct: 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263

Query: 184 RSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKN 243
           +   + F       +  L++    +  +   +    S      L    +         + 
Sbjct: 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEA 323

Query: 244 SY-----LQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVD 298
            Y     +    L+ +    I           T ++     FT  +    + L +L  + 
Sbjct: 324 LYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLI 383

Query: 299 FSSNHFSGPIPSFHESRNLNYLDLSSNNLNG-----------------VLNLGRNNLNGT 341
              N           ++N++ L+    +LN                  VLNL  N L G+
Sbjct: 384 LQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS 443

Query: 342 LSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSL 401
           +   + P+   + +LDL  N++   +PK + +   LQ L+  +N +           +SL
Sbjct: 444 VFRCLPPK---VKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSL 499

Query: 402 QVLVLRSNNF 411
           Q + L  N +
Sbjct: 500 QYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 59.9 bits (145), Expect = 1e-09
 Identities = 70/381 (18%), Positives = 128/381 (33%), Gaps = 36/381 (9%)

Query: 197 NLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN--FPKNSYLQNLNLANT 254
               L LSQ  +       I  +S L  L LS+N +   SL    F  N  L+ L++++ 
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI--RSLDFHVFLFNQDLEYLDVSHN 110

Query: 255 SFSGILPDPIGILKYLTRVDLRSCSFTG-PIPTSTTNLTQLFHVDFSSNHFSGPIPSFHE 313
               I       +  L  +DL    F   P+     NLT+L  +  S+  F         
Sbjct: 111 RLQNI---SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF--------- 158

Query: 314 SRNLNYLDLSSNNLNGV-LNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGV-VPKSL 371
            R L+ L ++  +L+ + L+L   ++ G  ++ +   N  +  L    N L  V V  S+
Sbjct: 159 -RQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSV 217

Query: 372 ANCNMLQV----LDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPL- 426
                LQ+    L+  N      F   L    +L  + L+    +   S       WP  
Sbjct: 218 NALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRP 277

Query: 427 LQIVDFASNKFGGRLS------QKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMS 480
           ++ ++  +     R+        + +    M     N+            F  +    +S
Sbjct: 278 VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLS 337

Query: 481 HNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL-----VGQ 535
            +           +      L+ + N  +  +    ++L  L  L L  N L     V  
Sbjct: 338 ISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL 397

Query: 536 IPTAKHVLPNFNLHRRQLQAM 556
           +      L   ++    L + 
Sbjct: 398 MTKNMSSLETLDVSLNSLNSH 418

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 50.6 bits (121), Expect = 9e-07
 Identities = 57/324 (17%), Positives = 104/324 (32%), Gaps = 44/324 (13%)

Query: 61  LFSLQYMQSQFGLANLTNLT-YLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSW 119
           LFS+Q   S   L +L      LN  +C       +E++  P L+ + L   E     +W
Sbjct: 208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE----TTW 263

Query: 120 RLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSF----------LPNLQVLNLSS 169
           +  +  F FF   + +  L + N+ ++          S           + N   L    
Sbjct: 264 KCSVKLFQFFWP-RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKE 322

Query: 170 CLLLGPINHHLANL-RSHSQFFFV---ANLLNLTNLDLSQCDLRGKYPEKILQVSTLETL 225
            L       ++  L  S + F  +    +  + T L+ +Q        +    +  L+TL
Sbjct: 323 ALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTL 382

Query: 226 DLSYNPLLQGSLPN-FPKNSYLQNLNLANTSF----SGILPDPIGILKYLTRVDLRSCSF 280
            L  N L   +          + +L   + S     S          + +  ++L S   
Sbjct: 383 ILQRNGL--KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440

Query: 281 TGPIPTS-TTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGV--------- 330
           TG +       +  L   D  +N            + L  L+++SN L  V         
Sbjct: 441 TGSVFRCLPPKVKVL---DLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLT 497

Query: 331 ----LNLGRNNLNGTLSDIIFPRN 350
               + L  N  + T   I +   
Sbjct: 498 SLQYIWLHDNPWDCTCPGIRYLSE 521

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 83.6 bits (207), Expect = 3e-17
 Identities = 64/354 (18%), Positives = 111/354 (31%), Gaps = 53/354 (14%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNL 132
              L  LT L+  +   T    T I  L  L  L  +S   I+                 
Sbjct: 38  EEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNN-ITTLD----------LSQN 84

Query: 133 KELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLR----SHSQ 188
             L  L  D+  L+ L       ++ L  L  LN  +  L          L     + + 
Sbjct: 85  TNLTYLACDSNKLTNL------DVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNT 138

Query: 189 F--FFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYL 246
                V++   LT LD             +   + L TLD S+N + +  +        L
Sbjct: 139 LTEIDVSHNTQLTELDCHLNKK--ITKLDVTPQTQLTTLDCSFNKITELDVSQNKL---L 193

Query: 247 QNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSG 306
             LN    + + +    +     LT +D  S   T  I  +   LTQL + D S N  + 
Sbjct: 194 NRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-IDVT--PLTQLTYFDCSVNPLTE 247

Query: 307 PIPSFHESRNLNYLDLSSNNL--------NGVLNLGRNNLNGTLSDIIFPRNCGLHILDL 358
              S      L  L     +L          ++          + ++    N  L++LD 
Sbjct: 248 LDVSTLS--KLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRK-IKELDVTHNTQLYLLDC 304

Query: 359 SGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFS 412
               +  +    L+    L  L   N  +++     + + + L+ L   + +  
Sbjct: 305 QAAGITEL---DLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 83.2 bits (206), Expect = 3e-17
 Identities = 63/352 (17%), Positives = 112/352 (31%), Gaps = 47/352 (13%)

Query: 72  GLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQN 131
           G+  LT LT L  +    T     ++S    L  L   S   ++                
Sbjct: 59  GIEKLTGLTKLICTSNNITT---LDLSQNTNLTYLACDS-NKLTNLD----------VTP 104

Query: 132 LKELRELYLDNVDLSGLGTERCKALSFLP----NLQVLNLSSCLLLGPINHHLANLRSHS 187
           L +L  L  D   L+ L   +   L++L      L  +++S    L  ++ HL       
Sbjct: 105 LTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKK---I 161

Query: 188 QFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQ 247
               V     LT LD S   +       + Q   L  L+   N +   +  +  +N  L 
Sbjct: 162 TKLDVTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNI---TKLDLNQNIQLT 215

Query: 248 NLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGP 307
            L+ ++   + I    +  L  LT  D      T    ++ + LT L             
Sbjct: 216 FLDCSSNKLTEI---DVTPLTQLTYFDCSVNPLTELDVSTLSKLTTL---HCIQTDLLE- 268

Query: 308 IPSFHESRNLNYLDLSSNNLNGVLNLGRN------NLNGT-LSDIIFPRNCGLHILDLSG 360
           I     +  L Y           L++  N      +     ++++   +N  L  L L+ 
Sbjct: 269 ID-LTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNN 327

Query: 361 NQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFS 412
            +L  +    +++   L+ L   N HI D     +    +L           
Sbjct: 328 TELTEL---DVSHNTKLKSLSCVNAHIQDFSS--VGKIPALNNNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 54/360 (15%), Positives = 105/360 (29%), Gaps = 93/360 (25%)

Query: 197 NLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSF 256
           N  +   +  +++        Q++TL +LD   + +    +    K + L  L   + + 
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT--DMTGIEKLTGLTKLICTSNNI 76

Query: 257 SGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRN 316
           + +    +     LT +   S   T    T  T LT L   +  +N  +       ++  
Sbjct: 77  TTL---DLSQNTNLTYLACDSNKLTNLDVTPLTKLTYL---NCDTNKLTKL--DVSQNPL 128

Query: 317 LNYLDLSSNNLNGVLNLGRN--------NLNGTLSDIIFPRNCGLHILDLSGNQLQGVVP 368
           L YL+ + N L   +++  N        +LN  ++ +       L  LD S N++  +  
Sbjct: 129 LTYLNCARNTLT-EIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL-- 185

Query: 369 KSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQ 428
             ++   +L  L+   N+I+      L     L  L   SN                 L 
Sbjct: 186 -DVSQNKLLNRLNCDTNNITK-LD--LNQNIQLTFLDCSSNK----------------LT 225

Query: 429 IVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSI 488
            +D                                          L   + S N LT   
Sbjct: 226 EIDVTPLT------------------------------------QLTYFDCSVNPLTELD 249

Query: 489 PSSFGNLK-------QIESLDLS---------MNNLSGKIPAQLASLNFLSVLNLSYNNL 532
            S+   L         +  +DL+                    +     L +L+     +
Sbjct: 250 VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGI 309

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 34/219 (15%), Positives = 65/219 (29%), Gaps = 41/219 (18%)

Query: 69  SQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSRE----PISGFSW--RLG 122
           ++  +  LT LTY + S    T E+   +S+L +L TL     +     ++  +      
Sbjct: 225 TEIDVTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ 281

Query: 123 IPNFNF-----FQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPIN 177
                        +  +L  L      ++ L       LS  P L  L L++  L     
Sbjct: 282 AEGCRKIKELDVTHNTQLYLLDCQAAGITEL------DLSQNPKLVYLYLNNTEL----- 330

Query: 178 HHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSL 237
                         V++   L +L      +  +    + ++  L     +    +    
Sbjct: 331 ----------TELDVSHNTKLKSLSCVNAHI--QDFSSVGKIPALNNNFEAEGQTITMPK 378

Query: 238 PNFPKNSYLQNLNLANTSFSG----ILPDPIGILKYLTR 272
                NS    ++       G    I P   G+    T 
Sbjct: 379 ETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATN 417

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.5 bits (204), Expect = 6e-17
 Identities = 51/254 (20%), Positives = 87/254 (34%), Gaps = 27/254 (10%)

Query: 77  TNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELR 136
           +N  YLNL               L  L  L L            +       F  L  L 
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN--------SIRQIEVGAFNGLASLN 126

Query: 137 ELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLL 196
            L L +  L+ + +    A  +L  L+ L L +          + ++ S++ F     + 
Sbjct: 127 TLELFDNWLTVIPSG---AFEYLSKLRELWLRNN--------PIESIPSYA-F---NRVP 171

Query: 197 NLTNLDLSQCDLRGKYPEKILQ-VSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTS 255
           +L  LDL +        E   + +  L+ L+L    +    +PN      L+ L ++   
Sbjct: 172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK--DMPNLTPLVGLEELEMSGNH 229

Query: 256 FSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSG-PIPSFHES 314
           F  I P     L  L ++ + +   +     +   L  L  ++ + N+ S  P   F   
Sbjct: 230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289

Query: 315 RNLNYLDLSSNNLN 328
           R L  L L  N  N
Sbjct: 290 RYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.1 bits (203), Expect = 7e-17
 Identities = 48/255 (18%), Positives = 88/255 (34%), Gaps = 30/255 (11%)

Query: 160 PNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQV 219
            N + LNL          +++  +++   F    +L +L  L L +  +R         +
Sbjct: 75  SNTRYLNLM--------ENNIQMIQA-DTF---RHLHHLEVLQLGRNSIRQIEVGAFNGL 122

Query: 220 STLETLDLSYNPLLQGSLPN--FPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRS 277
           ++L TL+L  N L    +P+  F   S L+ L L N     I       +  L R+DL  
Sbjct: 123 ASLNTLELFDNWL--TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE 180

Query: 278 CSFTGPIPTST-TNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRN 336
                 I       L  L +++    +    +P+      L  L++S N+          
Sbjct: 181 LKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPNLTPLVGLEELEMSGNHFP-------- 231

Query: 337 NLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLR 396
                +    F     L  L +  +Q+  +   +      L  L+  +N++S        
Sbjct: 232 ----EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287

Query: 397 NASSLQVLVLRSNNF 411
               L  L L  N +
Sbjct: 288 PLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 77.1 bits (190), Expect = 3e-15
 Identities = 50/286 (17%), Positives = 88/286 (30%), Gaps = 67/286 (23%)

Query: 263 PIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSG-PIPSFHESRNLNYLD 321
           P GI      ++L   +       +  +L  L  +    N      + +F+   +LN L+
Sbjct: 70  PQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE 129

Query: 322 LSSNNLNGV-------------LNLGRNNLNGTLSDIIFPRNCGLHILDLSG-NQLQGVV 367
           L  N L  +             L L  N +  ++    F R   L  LDL    +L+ + 
Sbjct: 130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYIS 188

Query: 368 PKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLL 427
             +      L+ L+    +I D     L     L+ L +  N                  
Sbjct: 189 EGAFEGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGN------------------ 228

Query: 428 QIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGS 487
              +     F G                                 SL  L + ++ ++  
Sbjct: 229 HFPEIRPGSFHG-------------------------------LSSLKKLWVMNSQVSLI 257

Query: 488 IPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV 533
             ++F  L  +  L+L+ NNLS         L +L  L+L +N   
Sbjct: 258 ERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 77.1 bits (190), Expect = 4e-15
 Identities = 54/233 (23%), Positives = 90/233 (38%), Gaps = 30/233 (12%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEI-SSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQN 131
             +L +L  L L       +I     + L  L TL+L     ++       IP+   F+ 
Sbjct: 95  FRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNW-LT------VIPS-GAFEY 145

Query: 132 LKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFF 191
           L +LREL+L N  +  + +    A + +P+L  L+L     L  I        S   F  
Sbjct: 146 LSKLRELWLRNNPIESIPSY---AFNRVPSLMRLDLGELKKLEYI--------SEGAF-- 192

Query: 192 VANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN--FPKNSYLQNL 249
              L NL  L+L  C+++      +  +  LE L++S N      +    F   S L+ L
Sbjct: 193 -EGLFNLKYLNLGMCNIK--DMPNLTPLVGLEELEMSGNHF--PEIRPGSFHGLSSLKKL 247

Query: 250 NLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSN 302
            + N+  S I  +    L  L  ++L   + +       T L  L  +    N
Sbjct: 248 WVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 74.0 bits (182), Expect = 3e-14
 Identities = 48/269 (17%), Positives = 79/269 (29%), Gaps = 52/269 (19%)

Query: 270 LTRVDLRSCSFT---GPIPTSTTNLTQLFHVDFSSNHFSG-PIPSFHESRNLNYLDLSSN 325
            ++V       +     IP++T  L      +   N+       +F    +L  L L  N
Sbjct: 56  FSKVVCTRRGLSEVPQGIPSNTRYL------NLMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 326 NLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNN 385
           ++              +    F     L+ L+L  N L  +   +    + L+ L  RNN
Sbjct: 110 SIR------------QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN 157

Query: 386 HISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNV--SWPLLQIVDFASNKFGGRLSQ 443
            I            SL  L L        + Y           L+ ++            
Sbjct: 158 PIESIPSYAFNRVPSLMRLDLGELK---KLEYISEGAFEGLFNLKYLNLGMCNI------ 208

Query: 444 KCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDL 503
                              +    +     L  L MS N      P SF  L  ++ L +
Sbjct: 209 -------------------KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249

Query: 504 SMNNLSGKIPAQLASLNFLSVLNLSYNNL 532
             + +S         L  L  LNL++NNL
Sbjct: 250 MNSQVSLIERNAFDGLASLVELNLAHNNL 278

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 54.0 bits (130), Expect = 8e-08
 Identities = 35/139 (25%), Positives = 49/139 (35%), Gaps = 29/139 (20%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNL 132
              L NL YLNL  C    ++P  ++ L  L  L++ S                  F  L
Sbjct: 192 FEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEM-SGNHFPEIRPGS-------FHGL 241

Query: 133 KELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFV 192
             L++L++ N  +S +      A   L +L  LNL+             NL S     F 
Sbjct: 242 SSLKKLWVMNSQVSLIERN---AFDGLASLVELNLAHN-----------NLSSLPHDLF- 286

Query: 193 ANLLNLTNLDLS----QCD 207
             L  L  L L      CD
Sbjct: 287 TPLRYLVELHLHHNPWNCD 305

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 81.7 bits (202), Expect = 1e-16
 Identities = 54/255 (21%), Positives = 88/255 (34%), Gaps = 29/255 (11%)

Query: 77  TNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELR 136
           TN   LNL               L  L  L LS           +       F  L  L 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN--------HIRTIEIGAFNGLANLN 115

Query: 137 ELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLL 196
            L L +  L+ +      A  +L  L+ L L +          + ++ S++ F     + 
Sbjct: 116 TLELFDNRLTTIPNG---AFVYLSKLKELWLRNN--------PIESIPSYA-F---NRIP 160

Query: 197 NLTNLDLSQCDLRGKYPEKILQ-VSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTS 255
           +L  LDL +        E   + +S L  L+L+   L    +PN      L  L+L+   
Sbjct: 161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR--EIPNLTPLIKLDELDLSGNH 218

Query: 256 FSGILPDPIGILKYLTRVDLRSCSFTGPIPTST-TNLTQLFHVDFSSNHFSG-PIPSFHE 313
            S I P     L +L ++ +        I  +   NL  L  ++ + N+ +  P   F  
Sbjct: 219 LSAIRPGSFQGLMHLQKLWMIQSQIQV-IERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277

Query: 314 SRNLNYLDLSSNNLN 328
             +L  + L  N  N
Sbjct: 278 LHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.9 bits (192), Expect = 2e-15
 Identities = 57/234 (24%), Positives = 91/234 (38%), Gaps = 32/234 (13%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEI-SSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQN 131
             +L +L  L LS       I     + L  L TL+L     ++       IPN   F  
Sbjct: 84  FKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNR-LT------TIPN-GAFVY 134

Query: 132 LKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFF 191
           L +L+EL+L N  +  + +    A + +P+L+ L+L            L+ +   + F  
Sbjct: 135 LSKLKELWLRNNPIESIPSY---AFNRIPSLRRLDLGE-------LKRLSYISEGA-F-- 181

Query: 192 VANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLL---QGSLPNFPKNSYLQN 248
              L NL  L+L+ C+LR      +  +  L+ LDLS N L     GS         LQ 
Sbjct: 182 -EGLSNLRYLNLAMCNLR--EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMH---LQK 235

Query: 249 LNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSN 302
           L +  +    I  +    L+ L  ++L   + T       T L  L  +    N
Sbjct: 236 LWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 74.4 bits (183), Expect = 2e-14
 Identities = 52/252 (20%), Positives = 85/252 (33%), Gaps = 49/252 (19%)

Query: 284 IPTSTTNLTQLFHVDFSSNHFSG-PIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTL 342
           I T+T  L      +   N      + SF   R+L  L LS N++             T+
Sbjct: 62  ISTNTRLL------NLHENQIQIIKVNSFKHLRHLEILQLSRNHIR------------TI 103

Query: 343 SDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQ 402
               F     L+ L+L  N+L  +   +    + L+ L  RNN I            SL+
Sbjct: 104 EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR 163

Query: 403 VLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGG--RLSQKCSTTLGMRYQATNKRC 460
            L L                     ++   +   F G   L       L +        C
Sbjct: 164 RLDLGELK-----------------RLSYISEGAFEGLSNL-----RYLNLAM------C 195

Query: 461 RDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLN 520
             +    +     L  L++S N L+   P SF  L  ++ L +  + +         +L 
Sbjct: 196 NLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ 255

Query: 521 FLSVLNLSYNNL 532
            L  +NL++NNL
Sbjct: 256 SLVEINLAHNNL 267

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 74.4 bits (183), Expect = 2e-14
 Identities = 52/286 (18%), Positives = 87/286 (30%), Gaps = 67/286 (23%)

Query: 263 PIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSG-PIPSFHESRNLNYLD 321
           P GI      ++L           S  +L  L  +  S NH     I +F+   NLN L+
Sbjct: 59  PDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE 118

Query: 322 LSSNNLNGV-------------LNLGRNNLNGTLSDIIFPRNCGLHILDLSG-NQLQGVV 367
           L  N L  +             L L  N +  ++    F R   L  LDL    +L  + 
Sbjct: 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYIS 177

Query: 368 PKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLL 427
             +    + L+ L+    ++ +     L     L  L L  N                  
Sbjct: 178 EGAFEGLSNLRYLNLAMCNLRE--IPNLTPLIKLDELDLSGN------------------ 217

Query: 428 QIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGS 487
            +       F G                                  L  L M  + +   
Sbjct: 218 HLSAIRPGSFQG-------------------------------LMHLQKLWMIQSQIQVI 246

Query: 488 IPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV 533
             ++F NL+ +  ++L+ NNL+         L+ L  ++L +N   
Sbjct: 247 ERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 72.1 bits (177), Expect = 1e-13
 Identities = 52/233 (22%), Positives = 78/233 (33%), Gaps = 24/233 (10%)

Query: 220 STLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCS 279
           +    L+L  N +    + +F    +L+ L L+      I       L  L  ++L    
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 280 FTGPIPTST-TNLTQLFHVDFSSNHFSG-PIPSFHESRNLNYLDLSSNN---------LN 328
            T  IP      L++L  +   +N     P  +F+   +L  LDL               
Sbjct: 124 LTT-IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182

Query: 329 G-----VLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFR 383
           G      LNL   NL   + +        L  LDLSGN L  + P S      LQ L   
Sbjct: 183 GLSNLRYLNLAMCNLR-EIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239

Query: 384 NNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNV-SWPLLQIVDFASN 435
            + I         N  SL  + L  NN +     P +       L+ +    N
Sbjct: 240 QSQIQVIERNAFDNLQSLVEINLAHNNLT---LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 61.7 bits (150), Expect = 3e-10
 Identities = 40/173 (23%), Positives = 62/173 (35%), Gaps = 26/173 (15%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEI-SSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQN 131
              L+ L  L L +      IP+   + +P L  LDL   + +S  S          F+ 
Sbjct: 132 FVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISE-------GAFEG 183

Query: 132 LKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLR------- 184
           L  LR L L   +L  +       L+ L  L  L+LS   L          L        
Sbjct: 184 LSNLRYLNLAMCNLREIPN-----LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238

Query: 185 SHSQFFFV-----ANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPL 232
             SQ   +      NL +L  ++L+  +L     +    +  LE + L +NP 
Sbjct: 239 IQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 80.1 bits (198), Expect = 1e-16
 Identities = 61/287 (21%), Positives = 89/287 (31%), Gaps = 66/287 (22%)

Query: 263 PIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSG---PIPSFHESRNLNY 319
           P GI    TR++L S             LTQL  +  SSN  S       S   + +L Y
Sbjct: 23  PTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82

Query: 320 LDLSSNNLNGV------------LNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVV 367
           LDLS N +  +            L+   +NL       +F     L  LD+S    +   
Sbjct: 83  LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142

Query: 368 PKSLANCNMLQVLDFRNNHISDNF-PCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPL 426
                  + L+VL    N   +NF P       +L  L L        +          L
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC----QLEQLSPTAFNSL 198

Query: 427 LQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTG 486
                                                         SL  LNMSHN    
Sbjct: 199 ---------------------------------------------SSLQVLNMSHNNFFS 213

Query: 487 SIPSSFGNLKQIESLDLSMNNLSGKIPAQLASL-NFLSVLNLSYNNL 532
                +  L  ++ LD S+N++      +L    + L+ LNL+ N+ 
Sbjct: 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 53/210 (25%), Positives = 81/210 (38%), Gaps = 18/210 (8%)

Query: 220 STLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANT--SFSGILPDPIGILKYLTRVDLRS 277
           S+   L+L  N L       F K + L  L+L++   SF G           L  +DL  
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 278 CSFTGPIPTSTTNLTQLFHVDFSSNHFS--GPIPSFHESRNLNYLDLSSNNLNGV----- 330
                 + ++   L QL H+DF  ++         F   RNL YLD+S  +         
Sbjct: 88  NGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 331 --------LNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDF 382
                   L +  N+        IF     L  LDLS  QL+ + P +  + + LQVL+ 
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206

Query: 383 RNNHISDNFPCWLRNASSLQVLVLRSNNFS 412
            +N+         +  +SLQVL    N+  
Sbjct: 207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 78.9 bits (195), Expect = 2e-16
 Identities = 53/255 (20%), Positives = 90/255 (35%), Gaps = 24/255 (9%)

Query: 77  TNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELR 136
           ++ T L L               L +L  L LSS   +S      G  + + F     L+
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LS----FKGCCSQSDF-GTTSLK 81

Query: 137 ELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLL 196
            L L    +  + +        L  L+ L+            +L  +   S F    +L 
Sbjct: 82  YLDLSFNGVITMSS----NFLGLEQLEHLDFQHS--------NLKQMSEFSVF---LSLR 126

Query: 197 NLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKN-SYLQNLNLANTS 255
           NL  LD+S    R  +      +S+LE L ++ N   +  LP+       L  L+L+   
Sbjct: 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186

Query: 256 FSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSG-PIPSF-HE 313
              + P     L  L  +++   +F          L  L  +D+S NH          H 
Sbjct: 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246

Query: 314 SRNLNYLDLSSNNLN 328
             +L +L+L+ N+  
Sbjct: 247 PSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 68.5 bits (168), Expect = 8e-13
 Identities = 52/239 (21%), Positives = 83/239 (34%), Gaps = 31/239 (12%)

Query: 73  LANLTNLTYLNLSHCGFT--GEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQ 130
              LT LT L+LS  G +  G           L  LDLS    I+       +   + F 
Sbjct: 48  FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-------MS--SNFL 98

Query: 131 NLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFF 190
            L++L  L   + +L  +          L NL  L++S             + R      
Sbjct: 99  GLEQLEHLDFQHSNLKQMSEFS--VFLSLRNLIYLDISHT-----------HTRVAFNGI 145

Query: 191 FVANLLNLTNLDLSQCDLRGKYPEKILQ-VSTLETLDLSYNPLLQGSLPN--FPKNSYLQ 247
           F   L +L  L ++    +  +   I   +  L  LDLS   L    L    F   S LQ
Sbjct: 146 F-NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL--EQLSPTAFNSLSSLQ 202

Query: 248 NLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNL-TQLFHVDFSSNHFS 305
            LN+++ +F  +   P   L  L  +D               +  + L  ++ + N F+
Sbjct: 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 30/188 (15%), Positives = 58/188 (30%), Gaps = 28/188 (14%)

Query: 351 CGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNN 410
           C    +  +   L  V     ++      L+  +N +           + L  L L SN 
Sbjct: 7   CSGTEIRCNSKGLTSVPTGIPSS---ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG 63

Query: 411 FSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGR 470
            S      +++     L+ +D + N            T+               +     
Sbjct: 64  LSFKGCCSQSDFGTTSLKYLDLSFNGV---------ITM---------------SSNFLG 99

Query: 471 FKSLYALNMSHNALTGSIPSS-FGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSY 529
            + L  L+  H+ L      S F +L+ +  LD+S  +           L+ L VL ++ 
Sbjct: 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159

Query: 530 NNLVGQIP 537
           N+      
Sbjct: 160 NSFQENFL 167

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 28/140 (20%), Positives = 50/140 (35%), Gaps = 27/140 (19%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEI-SSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQN 131
              L++L  L ++   F      +I + L  L  LDLS          +L   +   F +
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC--------QLEQLSPTAFNS 197

Query: 132 LKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFF 191
           L  L+ L + + +   L T        L +LQVL+ S             ++ +  +   
Sbjct: 198 LSSLQVLNMSHNNFFSLDTF---PYKCLNSLQVLDYSLN-----------HIMTSKKQEL 243

Query: 192 VANLLNLTNLDLS----QCD 207
                +L  L+L+     C 
Sbjct: 244 QHFPSSLAFLNLTQNDFACT 263

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 82.3 bits (203), Expect = 1e-16
 Identities = 48/307 (15%), Positives = 103/307 (33%), Gaps = 47/307 (15%)

Query: 131 NLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFF 190
           N   L +    N  +SG   +   A        +   +        N  ++ L+      
Sbjct: 9   NNFSLSQNSFYNT-ISGTYADYFSAWDKWEKQALPGEN-------RNEAVSLLKE----- 55

Query: 191 FVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLN 250
               +   + L L++ +L    P+ +     +  L+++ N L   SLP  P +  L+ L+
Sbjct: 56  --CLINQFSELQLNRLNLS-SLPDNLPP--QITVLEITQNAL--ISLPELPAS--LEYLD 106

Query: 251 LANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPS 310
             +   S  LP+    LK+L   D+ +   T  +P     L  +   +  +N  +  +P 
Sbjct: 107 ACDNRLS-TLPELPASLKHL---DVDNNQLTM-LPELPALLEYI---NADNNQLTM-LPE 157

Query: 311 FHESRNLNYLDLSSNNLNGV---------LNLGRNNLNGTLSDIIFPRNC---GLHILDL 358
                +L  L + +N L  +         L++  N L  +L  +    +           
Sbjct: 158 --LPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRC 214

Query: 359 SGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYP 418
             N++   +P+++ + +    +   +N +S      L   ++          FS      
Sbjct: 215 RENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

Query: 419 RNNVSWP 425
                  
Sbjct: 274 NTLHRPL 280

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 70.4 bits (172), Expect = 5e-13
 Identities = 55/344 (15%), Positives = 100/344 (29%), Gaps = 91/344 (26%)

Query: 194 NLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQG-SLPNFPKNSYLQNLNLA 252
           N  +L+  +     + G Y +        E   L      +  SL      +    L L 
Sbjct: 9   NNFSLSQ-NSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLN 67

Query: 253 NTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFH 312
             + S +   P  +   +T +++   +    +P    +L  L   D   N  S  +P   
Sbjct: 68  RLNLSSL---PDNLPPQITVLEITQNALI-SLPELPASLEYL---DACDNRLST-LPE-- 117

Query: 313 ESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLA 372
              +L +LD+ +N L              L ++       L  ++   NQL  ++P+   
Sbjct: 118 LPASLKHLDVDNNQLT------------MLPELP----ALLEYINADNNQLT-MLPELPT 160

Query: 373 NCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDF 432
           +   L+VL  RNN ++   P    +   L+ L + +N             S P       
Sbjct: 161 S---LEVLSVRNNQLTF-LPELPES---LEALDVSTNLLE----------SLP------- 196

Query: 433 ASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSL----YALNMSHNALTGSI 488
                                                R               N +T  I
Sbjct: 197 ---------------------------------AVPVRNHHSEETEIFFRCRENRIT-HI 222

Query: 489 PSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 532
           P +  +L    ++ L  N LS +I   L+        +      
Sbjct: 223 PENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 67.3 bits (164), Expect = 6e-12
 Identities = 46/277 (16%), Positives = 86/277 (31%), Gaps = 52/277 (18%)

Query: 74  ANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLK 133
             +   + L L+    +  +P  +   P++  L+++    IS       +P         
Sbjct: 56  CLINQFSELQLNRLNLS-SLPDNL--PPQITVLEITQNALIS-------LPE-----LPA 100

Query: 134 ELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVA 193
            L  L   +  LS L            +L+ L++ +  L       L  L          
Sbjct: 101 SLEYLDACDNRLSTLPEL-------PASLKHLDVDNNQL-----TMLPEL---------- 138

Query: 194 NLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLAN 253
               L  ++     L    PE     ++LE L +  N L    LP  P++  L+ L+++ 
Sbjct: 139 -PALLEYINADNNQLT-MLPELP---TSLEVLSVRNNQL--TFLPELPES--LEALDVST 189

Query: 254 TSFSGILPDPIGILKYLTRV----DLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIP 309
                 LP       +          R    T  IP +  +L     +    N  S  I 
Sbjct: 190 NLLES-LPAVPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIR 247

Query: 310 SFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDII 346
                +              + +  +N L+  L+D +
Sbjct: 248 ESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAV 284

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 63.8 bits (155), Expect = 7e-11
 Identities = 53/298 (17%), Positives = 100/298 (33%), Gaps = 54/298 (18%)

Query: 127 NFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSH 186
           ++F    +  +  L   + +   +   + L  +     L L+             NL S 
Sbjct: 28  DYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRL-----------NLSSL 74

Query: 187 SQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYL 246
                      +T L+++Q  L    PE     ++LE LD   N L   +LP  P +  L
Sbjct: 75  PDNLPP----QITVLEITQNALI-SLPELP---ASLEYLDACDNRL--STLPELPAS--L 122

Query: 247 QNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSG 306
           ++L++ N   + +LP+   +L+Y+   +  +   T  +P   T+L  L      +N  + 
Sbjct: 123 KHLDVDNNQLT-MLPELPALLEYI---NADNNQLTM-LPELPTSLEVL---SVRNNQLTF 174

Query: 307 PIPSFHESRNLNYLDLSSNNL----------------NGVLNLGRNNLNGTLSDIIFPRN 350
            +P      +L  LD+S+N L                        N +   + + I    
Sbjct: 175 -LPE--LPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENIL-SL 229

Query: 351 CGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRS 408
                + L  N L   + +SL+             + S +          L   V   
Sbjct: 230 DPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAW 287

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 49/234 (20%), Positives = 78/234 (33%), Gaps = 49/234 (20%)

Query: 323 SSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNM--LQVL 380
            +NN +   N   N ++GT +D  F          L G   +      L  C +     L
Sbjct: 7   INNNFSLSQNSFYNTISGTYADY-FSAWDKWEKQALPGEN-RNEAVSLLKECLINQFSEL 64

Query: 381 DFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGR 440
                ++S   P  L     + VL +  N      S P    S   L+ +D   N+    
Sbjct: 65  QLNRLNLSS-LPDNL--PPQITVLEITQNALI---SLPELPAS---LEYLDACDNRL--- 112

Query: 441 LSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIES 500
                 +TL                E      SL  L++ +N LT  +P     L   E 
Sbjct: 113 ------STL---------------PELPA---SLKHLDVDNNQLT-MLPELPALL---EY 144

Query: 501 LDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKHVLPNFNLHRRQLQ 554
           ++   N L+  +P    SL    VL++  N L   +P     L   ++    L+
Sbjct: 145 INADNNQLT-MLPELPTSL---EVLSVRNNQL-TFLPELPESLEALDVSTNLLE 193

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 78.9 bits (195), Expect = 4e-16
 Identities = 56/313 (17%), Positives = 104/313 (33%), Gaps = 54/313 (17%)

Query: 222 LETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFT 281
           L++L  +Y+ +         +     +L L   +       P  I    T +DL++   +
Sbjct: 16  LDSLPPTYSAMCPFGCHCHLRVVQCSDLGL--KAV------PKEISPDTTLLDLQNNDIS 67

Query: 282 GPIPTSTTNLTQLFHVDFSSNHFSG-PIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNG 340
                    L  L+ +   +N  S     +F   R L  L +S N+L             
Sbjct: 68  ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV------------ 115

Query: 341 TLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDN-FPCWLRNAS 399
            +   +      L  L +  N+++ V     +    +  ++   N + ++ F     +  
Sbjct: 116 EIPPNLPS---SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172

Query: 400 SLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKR 459
            L  L +     +     P++      L  +    NK            +          
Sbjct: 173 KLNYLRISEAKLT---GIPKD--LPETLNELHLDHNKI---------QAIE--------- 209

Query: 460 CRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASL 519
                 E++ R+  LY L + HN +      S   L  +  L L  N LS ++PA L  L
Sbjct: 210 -----LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDL 263

Query: 520 NFLSVLNLSYNNL 532
             L V+ L  NN+
Sbjct: 264 KLLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 75.4 bits (186), Expect = 5e-15
 Identities = 53/305 (17%), Positives = 98/305 (32%), Gaps = 46/305 (15%)

Query: 220 STLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCS 279
                LDL  N + +    +F    +L  L L N   S I       L+ L ++ +    
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 280 FTGPIPTST-TNLTQLFHVDFSSNHFSG-PIPSFHESRNLNYLDLSSNNLNG-------- 329
               IP +  ++L +L       N     P   F   RN+N +++  N L          
Sbjct: 114 LVE-IPPNLPSSLVEL---RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169

Query: 330 ------VLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFR 383
                  L +    L   +   +      L+ L L  N++Q +  + L   + L  L   
Sbjct: 170 DGLKLNYLRISEAKLT-GIPKDLPET---LNELHLDHNKIQAIELEDLLRYSKLYRLGLG 225

Query: 384 NNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQ 443
           +N I       L    +L+ L L +N  S     P       LLQ+V   +N    ++  
Sbjct: 226 HNQIRMIENGSLSFLPTLRELHLDNNKLS---RVPAGLPDLKLLQVVYLHTNNI-TKVGV 281

Query: 444 KCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSI--PSSFGNLKQIESL 501
                +G                   +      +++ +N +      P++F  +    ++
Sbjct: 282 NDFCPVGF----------------GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAI 325

Query: 502 DLSMN 506
                
Sbjct: 326 QFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 49/308 (15%), Positives = 89/308 (28%), Gaps = 55/308 (17%)

Query: 243 NSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFT---GPIPTSTTNLTQLFHVDF 299
            +     +L +   +     P G   +L  V             I   TT L      D 
Sbjct: 8   ETTSGIPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLL------DL 61

Query: 300 SSNHFSG-PIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDL 358
            +N  S      F   ++L  L L +N ++             + +  F     L  L +
Sbjct: 62  QNNDISELRKDDFKGLQHLYALVLVNNKIS------------KIHEKAFSPLRKLQKLYI 109

Query: 359 SGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYP 418
           S N L  + P   ++   L  L   +N I            ++  + +  N    +  + 
Sbjct: 110 SKNHLVEIPPNLPSS---LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE-NSGFE 165

Query: 419 RNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALN 478
                   L  +  +  K          T +                      ++L  L+
Sbjct: 166 PGAFDGLKLNYLRISEAKL---------TGI-----------------PKDLPETLNELH 199

Query: 479 MSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIP 537
           + HN +  +I         ++  L L  N +       L+ L  L  L+L  N L  ++P
Sbjct: 200 LDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVP 257

Query: 538 TAKHVLPN 545
                L  
Sbjct: 258 AGLPDLKL 265

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 70.0 bits (172), Expect = 3e-13
 Identities = 45/316 (14%), Positives = 88/316 (27%), Gaps = 62/316 (19%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNL 132
              L +L  L L +         +IS +                            F  L
Sbjct: 74  FKGLQHLYALVLVNN--------KISKIHEKA------------------------FSPL 101

Query: 133 KELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFV 192
           ++L++LY+    L  +            +L  L +         ++ +  +         
Sbjct: 102 RKLQKLYISKNHLVEIPPN------LPSSLVELRIH--------DNRIRKVPKGV----F 143

Query: 193 ANLLNLTNLDLSQCDLRGKY-PEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNL 251
           + L N+  +++    L              L  L +S   L             L  L+L
Sbjct: 144 SGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPET---LNELHL 200

Query: 252 ANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSF 311
            +     I  + +     L R+ L           S + L  L  +   +N  S      
Sbjct: 201 DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGL 260

Query: 312 HESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQ--GVVPK 369
            + + L  + L +NN+     +G N+       +        + + L  N +    V P 
Sbjct: 261 PDLKLLQVVYLHTNNIT---KVGVNDFCPVGFGVKRAY---YNGISLFNNPVPYWEVQPA 314

Query: 370 SLANCNMLQVLDFRNN 385
           +         + F N 
Sbjct: 315 TFRCVTDRLAIQFGNY 330

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 80.2 bits (197), Expect = 5e-16
 Identities = 46/267 (17%), Positives = 87/267 (32%), Gaps = 34/267 (12%)

Query: 71  FGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQ 130
           F           NL     T  +    + L  +  +  ++            I +    Q
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNS----------DIKSVQGIQ 62

Query: 131 NLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLL--LGPINHHLANLR---- 184
            L  + +L+L+   L+ +     K L+ L NL  L L    +  L  +   L  L+    
Sbjct: 63  YLPNVTKLFLNGNKLTDI-----KPLTNLKNLGWLFLDENKIKDLSSLK-DLKKLKSLSL 116

Query: 185 SH---SQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFP 241
            H   S    + +L  L +L L    +       + +++ L+TL L  N +    +    
Sbjct: 117 EHNGISDINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQI--SDIVPLA 172

Query: 242 KNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSS 301
             + LQNL L+    S +    +  LK L  ++L S           +NL     V  + 
Sbjct: 173 GLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 230

Query: 302 NHFSGPIPSFHESRNLNYLDLSSNNLN 328
                      +  +    ++  +   
Sbjct: 231 GSLV-TPEIISDDGDYEKPNVKWHLPE 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 79.8 bits (196), Expect = 6e-16
 Identities = 45/266 (16%), Positives = 84/266 (31%), Gaps = 33/266 (12%)

Query: 187 SQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYL 246
            Q F           +L +  +         ++++++ +  + + +   S+        +
Sbjct: 12  KQIFPDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDI--KSVQGIQYLPNV 67

Query: 247 QNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSG 306
             L L     + I   P+  LK L  + L              +L +L  +    N  S 
Sbjct: 68  TKLFLNGNKLTDI--KPLTNLKNLGWLFLDENKIKDLSSLK--DLKKLKSLSLEHNGISD 123

Query: 307 PIPSFHESRNLNYLDLSSNNLNGV-----------LNLGRNNLNGTLSDIIFPRNCG-LH 354
            I        L  L L +N +  +           L+L  N +    SDI+       L 
Sbjct: 124 -INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI----SDIVPLAGLTKLQ 178

Query: 355 ILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNF--- 411
            L LS N +  +  ++LA    L VL+  +    +       N      +     +    
Sbjct: 179 NLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 236

Query: 412 ---SGHISYPRNNVSWPLLQIVDFAS 434
              S    Y + NV W L +  +  S
Sbjct: 237 EIISDDGDYEKPNVKWHLPEFTNEVS 262

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 78.2 bits (192), Expect = 2e-15
 Identities = 44/287 (15%), Positives = 90/287 (31%), Gaps = 54/287 (18%)

Query: 246 LQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFS 305
           +      +T    I PD         + +L+  S T  +  +   L  +  +  +++   
Sbjct: 1   MGETITVSTPIKQIFPDDA--FAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK 56

Query: 306 GPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQG 365
             +       N+  L L+ N L  +  L                   L  L L  N+++ 
Sbjct: 57  S-VQGIQYLPNVTKLFLNGNKLTDIKPLTNLK--------------NLGWLFLDENKIKD 101

Query: 366 VVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWP 425
           +    L +   L+ L   +N ISD     L +   L+ L L +N     I+         
Sbjct: 102 LSS--LKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNK----ITDITVLSRLT 153

Query: 426 LLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALT 485
            L  +    N+          + +                  +     L  L +S N ++
Sbjct: 154 KLDTLSLEDNQI---------SDI----------------VPLAGLTKLQNLYLSKNHIS 188

Query: 486 GSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 532
             +  +   LK ++ L+L       K     ++L   + +  +  +L
Sbjct: 189 -DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 73.6 bits (180), Expect = 6e-14
 Identities = 45/242 (18%), Positives = 90/242 (37%), Gaps = 38/242 (15%)

Query: 97  ISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKAL 156
             +    +  +L  +           + +      L  + ++  +N D+  +     + +
Sbjct: 17  DDAFAETIKDNLKKKS----------VTDAVTQNELNSIDQIIANNSDIKSV-----QGI 61

Query: 157 SFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKI 216
            +LPN+  L L+   L              +    + NL NL  L L +  ++     K 
Sbjct: 62  QYLPNVTKLFLNGNKL--------------TDIKPLTNLKNLGWLFLDENKIKDLSSLKD 107

Query: 217 LQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLR 276
           L    L++L L +N +    +        L++L L N   + I    +  L  L  + L 
Sbjct: 108 L--KKLKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLE 161

Query: 277 SCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRN 336
               +  +P +   LT+L ++  S NH S  + +    +NL+ L+L S          ++
Sbjct: 162 DNQISDIVPLA--GLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQECLNKPINHQS 218

Query: 337 NL 338
           NL
Sbjct: 219 NL 220

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 68.6 bits (167), Expect = 2e-12
 Identities = 50/256 (19%), Positives = 87/256 (33%), Gaps = 44/256 (17%)

Query: 39  HVIGLDLSAEPILIGRLENASGLFSLQYM-------QSQFGLANLTNLTYLNLSHCGFTG 91
             I  +L  +   +      + L S+  +       +S  G+  L N+T L L+    T 
Sbjct: 22  ETIKDNLKKK--SVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT- 78

Query: 92  EIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTE 151
           +I   +++L  L  L L   +          I + +  ++LK+L+ L L++  +S +   
Sbjct: 79  DI-KPLTNLKNLGWLFLDENK----------IKDLSSLKDLKKLKSLSLEHNGISDI--- 124

Query: 152 RCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGK 211
               L  LP L+ L L +  +              +    ++ L  L  L L    +   
Sbjct: 125 --NGLVHLPQLESLYLGNNKI--------------TDITVLSRLTKLDTLSLEDNQISDI 168

Query: 212 YPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLT 271
            P   L  + L+ L LS N +    L        L  L L +        +    L    
Sbjct: 169 VPLAGL--TKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPN 224

Query: 272 RVDLRSCSFTGPIPTS 287
            V     S   P   S
Sbjct: 225 TVKNTDGSLVTPEIIS 240

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 61.7 bits (149), Expect = 4e-10
 Identities = 46/224 (20%), Positives = 78/224 (34%), Gaps = 35/224 (15%)

Query: 72  GLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQN 131
            L +L  L  L+L H G + +I   +  LP+L +L L +            I +      
Sbjct: 104 SLKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNN----------KITDITVLSR 151

Query: 132 LKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFF 191
           L +L  L L++  +S +       L+ L  LQ L LS   +              S    
Sbjct: 152 LTKLDTLSLEDNQISDI-----VPLAGLTKLQNLYLSKNHI--------------SDLRA 192

Query: 192 VANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYN----PLLQGSLPNFPKNSYLQ 247
           +A L NL  L+L   +   K       +    T+  +      P +     ++ K +   
Sbjct: 193 LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKW 252

Query: 248 NLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNL 291
           +L       S I   P+ I K   R   R       + T + ++
Sbjct: 253 HLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDV 296

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.0 bits (192), Expect = 5e-16
 Identities = 55/256 (21%), Positives = 83/256 (32%), Gaps = 41/256 (16%)

Query: 122 GIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLA 181
            +        +  L+EL L+N++++G         +  P+L +LNL +          LA
Sbjct: 84  ILFGALRVLGISGLQELTLENLEVTGTAPPP-LLEATGPDLNILNLRNVSWATRDAW-LA 141

Query: 182 NLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFP 241
            L+             L  L ++Q        E++     L TLDLS NP          
Sbjct: 142 ELQQWL-------KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE--------- 185

Query: 242 KNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSS 301
               L    L +       P     L+ L   +    + +G          QL  +D S 
Sbjct: 186 ----LGERGLISALCPLKFPT----LQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH 237

Query: 302 NHFSGPIP--SFHESRNLNYLDLSSNNLNGV----------LNLGRNNLNGTLSDIIFPR 349
           N         S      LN L+LS   L  V          L+L  N L+   S    P+
Sbjct: 238 NSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPSPDELPQ 297

Query: 350 NCGLHILDLSGNQLQG 365
              +  L L GN    
Sbjct: 298 ---VGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.4 bits (180), Expect = 2e-14
 Identities = 46/276 (16%), Positives = 78/276 (28%), Gaps = 46/276 (16%)

Query: 270 LTRVDLRSCSFTGPIPTS---TTNLTQLFHVDFSSNHFSGPIPS---FHESRNLNYLDLS 323
           L R+ +R+      I         ++ L  +   +   +G  P         +LN L+L 
Sbjct: 70  LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLR 129

Query: 324 SNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFR 383
           + +               L+++      GL +L ++         + +     L  LD  
Sbjct: 130 NVSWATRDAW--------LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLS 181

Query: 384 NNHISDNFPCW----LRNASSLQVLVLRSNNF-SGHISYPRNNVSWPLLQIVDFASNKFG 438
           +N                  +LQVL LR+    +          +   LQ +D + N   
Sbjct: 182 DNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR 241

Query: 439 GRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQI 498
                                              L +LN+S   L          L   
Sbjct: 242 DAA----------------------GAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL--- 276

Query: 499 ESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVG 534
             LDLS N L    P     L  +  L+L  N  + 
Sbjct: 277 SVLDLSYNRLDR-NP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.0 bits (166), Expect = 1e-12
 Identities = 52/258 (20%), Positives = 86/258 (33%), Gaps = 22/258 (8%)

Query: 54  RLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSL--PRLVTLDLSSR 111
           RL   +     + +     +  ++ L  L L +   TG  P  +     P L  L+L + 
Sbjct: 72  RLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV 131

Query: 112 EPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCL 171
              +  +W   +  +        L+ L +            C+ +   P L  L+LS   
Sbjct: 132 SWATRDAWLAELQQWL----KPGLKVLSIAQAHSLNF---SCEQVRVFPALSTLDLSDNP 184

Query: 172 LLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNP 231
            LG        L S         L  L   +       G           L+ LDLS+N 
Sbjct: 185 ELGERG-----LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN- 238

Query: 232 LLQGSLP--NFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTT 289
            L+ +    +    S L +LNL+ T    +   P G+   L+ +DL         P S  
Sbjct: 239 SLRDAAGAPSCDWPSQLNSLNLSFTGLKQV---PKGLPAKLSVLDLSYNRLDR-NP-SPD 293

Query: 290 NLTQLFHVDFSSNHFSGP 307
            L Q+ ++    N F   
Sbjct: 294 ELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 64.1 bits (156), Expect = 2e-11
 Identities = 51/275 (18%), Positives = 91/275 (33%), Gaps = 36/275 (13%)

Query: 274 DLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNL 333
           +  SC+F+ P P  ++    L   D         +    +  +         ++   L+L
Sbjct: 11  ESCSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSL 70

Query: 334 GRNNL-NGTLSDIIFPRNC------GLHILDLSGNQLQGVVPKSLANCNM--LQVLDFRN 384
            R  +    +   I           GL  L L   ++ G  P  L       L +L+ RN
Sbjct: 71  KRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRN 130

Query: 385 NHIS--DNFPCWLRNASSLQVLVLR-SNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRL 441
              +  D +   L+      + VL  +   S + S  +    +P L  +D + N   G  
Sbjct: 131 VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGER 189

Query: 442 SQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALT---GSIPSSFGNLKQI 498
               +                       +F +L  L + +  +    G   +      Q+
Sbjct: 190 GLISALCPL-------------------KFPTLQVLALRNAGMETPSGVCSALAAARVQL 230

Query: 499 ESLDLSMNNLSGKIPAQLAS-LNFLSVLNLSYNNL 532
           + LDLS N+L     A      + L+ LNLS+  L
Sbjct: 231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 78.2 bits (193), Expect = 7e-16
 Identities = 56/269 (20%), Positives = 87/269 (32%), Gaps = 39/269 (14%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEI-SSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQN 131
           L    NL  L L+  G    I  +  SSL  L  LDLS           L   + ++F+ 
Sbjct: 72  LQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN--------YLSNLSSSWFKP 122

Query: 132 LKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFF 191
           L  L  L L       LG       S L  LQ+L + +      I               
Sbjct: 123 LSSLTFLNLLGNPYKTLGETS--LFSHLTKLQILRVGNMDTFTKIQRKD----------- 169

Query: 192 VANLLNLTNLDLSQCDLRGKYPEKILQ-VSTLETLDLSYNPLLQGSLPN--FPKNSYLQN 248
            A L  L  L++   DL+  Y  K L+ +  +  L L         L        S ++ 
Sbjct: 170 FAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQH--ILLLEIFVDVTSSVEC 226

Query: 249 LNLAN--------TSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFS 300
           L L +        +  S    + +        V +   S    +      ++ L  ++FS
Sbjct: 227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFS 285

Query: 301 SNHFSG-PIPSFHESRNLNYLDLSSNNLN 328
            N     P   F    +L  + L +N  +
Sbjct: 286 RNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 72.1 bits (177), Expect = 8e-14
 Identities = 52/316 (16%), Positives = 98/316 (31%), Gaps = 63/316 (19%)

Query: 236 SLPNFPKN--SYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQ 293
           SL + P      +++L+L+N   + I    +     L  + L S         S ++L  
Sbjct: 42  SLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101

Query: 294 LFHVDFSSNHFSGPIPS--FHESRNLNYLDLSSNNLNGV--------------LNLGRNN 337
           L H+D S N+ S  + S  F    +L +L+L  N    +              L +G  +
Sbjct: 102 LEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 160

Query: 338 LNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRN 397
               +    F     L  L++  + LQ   PKSL +   +  L             ++  
Sbjct: 161 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV 220

Query: 398 ASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATN 457
            SS++ L LR  +                 ++    +N    +                 
Sbjct: 221 TSSVECLELRDTDLDTF----------HFSELSTGETNSLIKKF---------------- 254

Query: 458 KRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQ-L 516
                          +   + ++  +L   +      +  +  L+ S N L   +P    
Sbjct: 255 ---------------TFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIF 297

Query: 517 ASLNFLSVLNLSYNNL 532
             L  L  + L  N  
Sbjct: 298 DRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 69.0 bits (169), Expect = 7e-13
 Identities = 53/286 (18%), Positives = 100/286 (34%), Gaps = 33/286 (11%)

Query: 134 ELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVA 193
            ++ L L N  ++ +       L    NLQ L L+S          +  +      F  +
Sbjct: 53  AVKSLDLSNNRITYISN---SDLQRCVNLQALVLTSN--------GINTI--EEDSF--S 97

Query: 194 NLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLN--- 250
           +L +L +LDLS   L          +S+L  L+L  NP    +L      S+L  L    
Sbjct: 98  SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK--TLGETSLFSHLTKLQILR 155

Query: 251 -LANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSG-PI 308
                +F+ I       L +L  +++ +       P S  ++  + H+            
Sbjct: 156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE 215

Query: 309 PSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIF---PRNCGLHILDLSGNQLQG 365
                + ++  L+L   +L+        + +  LS        +      + ++   L  
Sbjct: 216 IFVDVTSSVECLELRDTDLDT------FHFS-ELSTGETNSLIKKFTFRNVKITDESLF- 267

Query: 366 VVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNF 411
            V K L   + L  L+F  N +           +SLQ + L +N +
Sbjct: 268 QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 72.7 bits (179), Expect = 2e-14
 Identities = 48/214 (22%), Positives = 68/214 (31%), Gaps = 22/214 (10%)

Query: 238 PNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHV 297
              P     Q + L     S +        + LT + L S         + T L  L  +
Sbjct: 28  VGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQL 85

Query: 298 DFSSNHFSGPIPS--FHESRNLNYLDLSSNNLNGV-------------LNLGRNNLNGTL 342
           D S N     +    FH    L+ L L    L  +             L L  N L   L
Sbjct: 86  DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-AL 144

Query: 343 SDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQ 402
            D  F     L  L L GN++  V  ++    + L  L    N ++   P   R+   L 
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 403 VLVLRSNNFSGHISYPRNN-VSWPLLQIVDFASN 435
            L L +NN S   + P         LQ +    N
Sbjct: 205 TLYLFANNLS---ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.9 bits (169), Expect = 4e-13
 Identities = 59/264 (22%), Positives = 81/264 (30%), Gaps = 69/264 (26%)

Query: 284 IPTSTTNLTQLFHVDFSSNHFSG-PIPSFHESRNLNYLDLSSNNLNGV------------ 330
           IP ++  +          N  S  P  SF   RNL  L L SN L  +            
Sbjct: 30  IPAASQRI------FLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 331 -LNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISD 389
            L+L  N    ++    F     LH L L    LQ + P        LQ L  ++N +  
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 390 NFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTL 449
                 R+  +L  L L  N                  +I       F G          
Sbjct: 144 LPDDTFRDLGNLTHLFLHGN------------------RISSVPERAFRG---------- 175

Query: 450 GMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS 509
                                  SL  L +  N +    P +F +L ++ +L L  NNLS
Sbjct: 176 ---------------------LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214

Query: 510 GKIPAQLASLNFLSVLNLSYNNLV 533
                 LA L  L  L L+ N  V
Sbjct: 215 ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.4 bits (160), Expect = 6e-12
 Identities = 45/230 (19%), Positives = 68/230 (29%), Gaps = 30/230 (13%)

Query: 77  TNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELR 136
                + L     +        +   L  L L S          L   +   F  L  L 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSN--------VLARIDAAAFTGLALLE 83

Query: 137 ELYL-DNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANL 195
           +L L DN  L  +          L  L  L+L  C         L  L     F     L
Sbjct: 84  QLDLSDNAQLRSVDPA---TFHGLGRLHTLHLDRC--------GLQELGPGL-F---RGL 128

Query: 196 LNLTNLDLSQCDLRGKYPEKILQ-VSTLETLDLSYNPLLQGSLPN--FPKNSYLQNLNLA 252
             L  L L    L+   P+   + +  L  L L  N +   S+P   F     L  L L 
Sbjct: 129 AALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRI--SSVPERAFRGLHSLDRLLLH 185

Query: 253 NTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSN 302
               + + P     L  L  + L + + +     +   L  L ++  + N
Sbjct: 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 46/184 (25%), Positives = 64/184 (34%), Gaps = 28/184 (15%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEI-SSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQN 131
              L  L  L+LS       +       L RL TL L  R  +      L       F+ 
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL-DRCGLQELGPGL-------FRG 127

Query: 132 LKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFF 191
           L  L+ LYL +  L  L  +       L NL  L L         N  ++++   + F  
Sbjct: 128 LAALQYLYLQDNALQALPDD---TFRDLGNLTHLFLHG-------N-RISSVPERA-F-- 173

Query: 192 VANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN--FPKNSYLQNL 249
              L +L  L L Q  +   +P     +  L TL L  N L   +LP         LQ L
Sbjct: 174 -RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL--SALPTEALAPLRALQYL 230

Query: 250 NLAN 253
            L +
Sbjct: 231 RLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 36/161 (22%), Positives = 56/161 (34%), Gaps = 25/161 (15%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEI-SSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQN 131
              L  L  L+L  CG   E+   +   L  L  L L     +              F++
Sbjct: 101 FHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNA-LQALPDDT-------FRD 151

Query: 132 LKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFF 191
           L  L  L+L    +S +      A   L +L  L L            +A++  H+ F  
Sbjct: 152 LGNLTHLFLHGNRISSVPER---AFRGLHSLDRLLLHQN--------RVAHVHPHA-F-- 197

Query: 192 VANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPL 232
             +L  L  L L   +L     E +  +  L+ L L+ NP 
Sbjct: 198 -RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 471 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQ-LASLNFLSVLNLSY 529
             +   + +  N ++    +SF   + +  L L  N L+ +I A     L  L  L+LS 
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSD 89

Query: 530 NNLVGQIP 537
           N  +  + 
Sbjct: 90  NAQLRSVD 97

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 74.2 bits (183), Expect = 3e-14
 Identities = 74/385 (19%), Positives = 108/385 (28%), Gaps = 70/385 (18%)

Query: 73  LANLTNLTYLNLSHCGFTGE----IPTEISSLPRLVTLDLS----SREPISGFSWRLGIP 124
           L  L     + L  CG T      I + +   P L  L+L         +      L  P
Sbjct: 24  LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83

Query: 125 NFNFFQNLKELRELYLDNVDLSGLGTER-CKALSFLPNLQVLNLSSCLLLGPINHHLANL 183
           +         +++L L N  L+G G       L  LP LQ L+LS  LL       L   
Sbjct: 84  SCK-------IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG 136

Query: 184 RSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQV----STLETLDLSYNPL------- 232
               Q         L  L L  C L     E +  V       + L +S N +       
Sbjct: 137 LLDPQC-------RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRV 189

Query: 233 LQGSLPNFPKNSYLQNLNLANTSFS----GILPDPIGILKYLTRVDLRSCSFTGP----- 283
           L   L +      L+ L L +   +      L   +     L  + L S           
Sbjct: 190 LCQGLKD--SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAEL 247

Query: 284 IPTSTTNLTQLFHVDFSSNHFSGP-----IPSFHESRNLNYLDLSSNNL--NGVLNLGRN 336
            P      ++L  +       +               +L  L L+ N L   G       
Sbjct: 248 CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL---- 303

Query: 337 NLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLA----NCNMLQVLDFRNNHISDNFP 392
                L + +    C L  L +             +        L  L   NN + D   
Sbjct: 304 -----LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 358

Query: 393 CWLRNA-----SSLQVLVLRSNNFS 412
             L        S L+VL L   + S
Sbjct: 359 RELCQGLGQPGSVLRVLWLADCDVS 383

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 73.1 bits (180), Expect = 6e-14
 Identities = 82/495 (16%), Positives = 147/495 (29%), Gaps = 99/495 (20%)

Query: 77  TNLTYLNLSHCGFTGE-IPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKEL 135
            ++  L++     +       +  L +   + L     ++    +      +  +    L
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCK---DISSALRVNPAL 58

Query: 136 RELYLDNVDLSGLGTER-CKAL-SFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVA 193
            EL L + +L  +G     + L +    +Q L+L +C L G     L++           
Sbjct: 59  AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP----- 113

Query: 194 NLLNLTNLDLSQCDLRGKYPEKILQV-----STLETLDLSYNPLLQGSLPNF----PKNS 244
               L  L LS   L     + + +        LE L L Y  L   S            
Sbjct: 114 ---TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKP 170

Query: 245 YLQNLNLANTSFS--------GILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFH 296
             + L ++N   +          L D    L+ L    L SC  T               
Sbjct: 171 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEAL---KLESCGVT--------------- 212

Query: 297 VDFSSNHFSGPIPSFHESRNLNYLDLSSNNL--NGVLNLGRNNLNGTLSDIIFPRNCGLH 354
              +     G + S     +L  L L SN L   G+  L    L+          +  L 
Sbjct: 213 -SDNCRDLCGIVAS---KASLRELALGSNKLGDVGMAELCPGLLHP---------SSRLR 259

Query: 355 ILDLSGNQLQGV----VPKSLANCNMLQVLDFRNNHISDNFPCWLRNA-----SSLQVLV 405
            L +    +       + + L     L+ L    N + D     L          L+ L 
Sbjct: 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319

Query: 406 LRSNNFSGH-----ISYPRNNVSWPLLQIVDFASNKFG---------GRLSQKCS-TTLG 450
           ++S +F+        S    N     L  +  ++N+           G          L 
Sbjct: 320 VKSCSFTAACCSHFSSVLAQN---RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 376

Query: 451 MRY-QATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFG-----NLKQIESLDLS 504
           +     ++  C   A   +    SL  L++S+N L  +               +E L L 
Sbjct: 377 LADCDVSDSSCSSLA-ATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLY 435

Query: 505 MNNLSGKIPAQLASL 519
               S ++  +L +L
Sbjct: 436 DIYWSEEMEDRLQAL 450

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 64.6 bits (158), Expect = 3e-11
 Identities = 63/368 (17%), Positives = 110/368 (29%), Gaps = 85/368 (23%)

Query: 69  SQFGLANLTNLTYLNLSHCGFTGEIPTEISSL----PRLVTLDLS----SREPISGFSWR 120
            +  L     L  L L +C  +      ++S+    P    L +S    +   +      
Sbjct: 134 CEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQG 193

Query: 121 LGIPNFNFFQNLKELRELYLDNVDLSGLGTER-CKALSFLPNLQVLNLSSCLLLGPINHH 179
           L             L  L L++  ++       C  ++   +L+ L L S  L       
Sbjct: 194 LKDSPCQ-------LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAE 246

Query: 180 LANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQV----STLETLDLSYNPLLQG 235
           L     H           L  L + +C +  K    + +V     +L+ L L+ N L   
Sbjct: 247 LCPGLLHPSS-------RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299

Query: 236 SLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLF 295
                      + L                    L  + ++SCSFT       ++ + + 
Sbjct: 300 GARLL-----CETLLEPGCQ--------------LESLWVKSCSFT---AACCSHFSSVL 337

Query: 296 HVDFSSNHFSGPIPSFHESRNLNYLDLSSNNL--NGVLNLGRNNLNGTLSDIIFPRNCGL 353
                             +R L  L +S+N L   GV           L   +      L
Sbjct: 338 AQ----------------NRFLLELQISNNRLEDAGVR---------ELCQGLGQPGSVL 372

Query: 354 HILDLSGNQL--QGVVP--KSLANCNMLQVLDFRNNHISDNFPCWL-----RNASSLQVL 404
            +L L+   +          +L   + L+ LD  NN + D     L     +    L+ L
Sbjct: 373 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 432

Query: 405 VLRSNNFS 412
           VL    +S
Sbjct: 433 VLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 51.5 bits (124), Expect = 5e-07
 Identities = 43/262 (16%), Positives = 74/262 (28%), Gaps = 67/262 (25%)

Query: 314 SRNLNYLDLSSNNLNG--------------VLNLGRNNLNGT-LSDI--IFPRNCGLHIL 356
           S ++  LD+    L+               V+ L    L      DI      N  L  L
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 357 DLSGNQLQGVVPKSLANC-----NMLQVLDFRNNHISD----NFPCWLRNASSLQVLVLR 407
           +L  N+L  V    +          +Q L  +N  ++          LR   +LQ L L 
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 408 SNNF--------SGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKR 459
            N             +  P+       L+ +            +  ++ L          
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCR-----LEKLQLEYCSLSAASCEPLASVL---------- 166

Query: 460 CRDQATEEMGRFKSLYALNMSHNALTGSIPSSFG-----NLKQIESLDLSMNNLSGK--- 511
                            L +S+N +  +           +  Q+E+L L    ++     
Sbjct: 167 ---------RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR 217

Query: 512 -IPAQLASLNFLSVLNLSYNNL 532
            +   +AS   L  L L  N L
Sbjct: 218 DLCGIVASKASLRELALGSNKL 239

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 69.7 bits (171), Expect = 5e-13
 Identities = 59/363 (16%), Positives = 96/363 (26%), Gaps = 92/363 (25%)

Query: 73  LANLTNLTYLNLSHCGFTGE----IPTEISSLPRLVTLDLSSREPISGFSWRLGIPN--- 125
           +A  + +   +L     T E    +   +     +  + LS           +G      
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGN--------TIGTEAARW 51

Query: 126 -FNFFQNLKELRELYLDNVDLSGLGTER-------CKALSFLPNLQVLNLSSCLLLGPIN 177
                 + K+L      ++    +  E         +AL   P L  + LS         
Sbjct: 52  LSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111

Query: 178 HHLAN-LRSHSQFFFVANLLNLTNLDLSQCDL-------------RGKYPEKILQVSTLE 223
             L + L  H+          L +L L    L                  +K      L 
Sbjct: 112 EPLIDFLSKHT---------PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR 162

Query: 224 TLDLSYNPLLQGSLPN----FPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCS 279
           ++    N L  GS+      F  +  L  + +           P GI   L    L  C 
Sbjct: 163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR-----PEGIEHLLLEG-LAYC- 215

Query: 280 FTGPIPTSTTNLTQLFHVDFSSNHFSGPI------PSFHESRNLNYLDLSSNNL--NGVL 331
                      L  L   D   N F   +       +     NL  L L+   L   G  
Sbjct: 216 ---------QELKVL---DLQDNTF-THLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262

Query: 332 NLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLA-----NCNMLQVLDFRNNH 386
            +                N GL  L L  N+++    ++L          L  L+   N 
Sbjct: 263 AVVDA--------FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314

Query: 387 ISD 389
            S+
Sbjct: 315 FSE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 60.9 bits (148), Expect = 4e-10
 Identities = 52/361 (14%), Positives = 105/361 (29%), Gaps = 73/361 (20%)

Query: 196 LNLTNLDLSQCDLRGKYPEKILQV----STLETLDLSYNPL-------LQGSLPNFPKNS 244
            ++    L    +  +  + +  V     +++ + LS N +       L  ++       
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIA---SKK 60

Query: 245 YLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHF 304
            L+    ++     +  +    L+ L +  L  C              +L  V  S N F
Sbjct: 61  DLEIAEFSDIFTGRVKDEIPEALRLLLQA-LLKC-------------PKLHTVRLSDNAF 106

Query: 305 SGPI------PSFHESRNLNYLDLSSNNL--NGVLNLGRNNLNGTLSDIIFPRNCGLHIL 356
            GP           +   L +L L +N L       + R  L     +        L  +
Sbjct: 107 -GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA-LQELAVNKKAKNAPPLRSI 164

Query: 357 DLSGNQLQ--GVVP--KSLANCNMLQVLDFRNNHISDNFPCW-----LRNASSLQVLVLR 407
               N+L+   +    K+  +  +L  +    N I            L     L+VL L+
Sbjct: 165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQ 224

Query: 408 SNNFS--GHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQAT 465
            N F+  G  +      SWP L+ +         R +                       
Sbjct: 225 DNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF---------------- 268

Query: 466 EEMGRFKSLYALNMSHNALTGSIPSSFG-----NLKQIESLDLSMNNLS--GKIPAQLAS 518
                   L  L + +N +      +        +  +  L+L+ N  S    +  ++  
Sbjct: 269 -SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIRE 327

Query: 519 L 519
           +
Sbjct: 328 V 328

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 50/311 (16%), Positives = 93/311 (29%), Gaps = 62/311 (19%)

Query: 135 LRELYLDNVDLSGLGTER-CKALSFLPNLQVLNLSSCLLLGPINHHLAN-LRSHSQFFFV 192
           +    L    ++    +     L    +++ + LS   +       L+  + S       
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK----- 60

Query: 193 ANLLNLTNLDLSQCDLRGKYPEK----------ILQVSTLETLDLSYNPLLQGSLPNF-- 240
               +L   + S         E           +L+   L T+ LS N     +      
Sbjct: 61  ----DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLID 116

Query: 241 --PKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVD 298
              K++ L++L L N         P      + R  L+  +    +     N   L  + 
Sbjct: 117 FLSKHTPLEHLYLHNNGLG-----PQAG-AKIARA-LQELA----VNKKAKNAPPLRSII 165

Query: 299 FSSNHFSGP-----IPSFHESRNLNYLDLSSNNLN--GVLNLGRNNLNGTLSDIIFPRNC 351
              N            +F   R L+ + +  N +   G+ +L    L   L+        
Sbjct: 166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL----LLEGLAY-----CQ 216

Query: 352 GLHILDLSGNQL--QGVVP--KSLANCNMLQVLDFRNNHISDNFPCWLRNA------SSL 401
            L +LDL  N     G      +L +   L+ L   +  +S      + +A        L
Sbjct: 217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL 276

Query: 402 QVLVLRSNNFS 412
           Q L L+ N   
Sbjct: 277 QTLRLQYNEIE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 57.4 bits (139), Expect = 5e-09
 Identities = 42/285 (14%), Positives = 81/285 (28%), Gaps = 56/285 (19%)

Query: 270 LTRVDLRSCSFTG----PIPTSTTNLTQLFHVDFSSNHFSGP-----IPSFHESRNLNYL 320
           +    L+  + T      +         +  +  S N            +    ++L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 321 DLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQL--QGVVP--KSLANCNM 376
           + S      V +     L   L  ++  +   LH + LS N        P    L+    
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALL--KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123

Query: 377 LQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNK 436
           L+ L   NN +       +  A +LQ L +     +            P L+ +    N+
Sbjct: 124 LEHLYLHNNGLGPQAGAKI--ARALQELAVNKKAKNA-----------PPLRSIICGRNR 170

Query: 437 FGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALT-----GSIPSS 491
                         M+  A          +     + L+ + M  N +        +   
Sbjct: 171 LENG---------SMKEWA----------KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG 211

Query: 492 FGNLKQIESLDLSMNNLSGK----IPAQLASLNFLSVLNLSYNNL 532
               ++++ LDL  N  +      +   L S   L  L L+   L
Sbjct: 212 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 39/234 (16%), Positives = 61/234 (26%), Gaps = 38/234 (16%)

Query: 43  LDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGE----IPTEIS 98
            + S       + E    L  L        L     L  + LS   F       +   +S
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQA-----LLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119

Query: 99  SLPRLVTLDLS----SREPISGFSWRLG-IPNFNFFQNLKELRELYLDNVDLSGLGTER- 152
               L  L L       +  +  +  L  +      +N   LR +      L     +  
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179

Query: 153 CKALSFLPNLQVLNLSSCLLLGP--INHHLANLRSHSQFFFVANLLNLTNLDLSQCDLR- 209
            K       L  + +     + P  I H L    ++ Q         L  LDL       
Sbjct: 180 AKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQ--------ELKVLDLQDNTFTH 230

Query: 210 --GKYPEKILQV-STLETLDLSYNPL-------LQGSLPNFPKNSYLQNLNLAN 253
                    L+    L  L L+   L       +  +     +N  LQ L L  
Sbjct: 231 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK-LENIGLQTLRLQY 283

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 34/183 (18%), Positives = 54/183 (29%), Gaps = 25/183 (13%)

Query: 63  SLQYMQSQFGLANLTNLTYLNLSHCGFTGE----IPTEISSLPRLVTLDLSSREPIS--G 116
           +LQ +       N   L  +                    S   L T+ +     I   G
Sbjct: 145 ALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEG 203

Query: 117 FSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTER-CKALSFLPNLQVLNLSSCLLLGP 175
               L           +EL+ L L +   + LG+     AL   PNL+ L L+ CLL   
Sbjct: 204 IEHLLL----EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259

Query: 176 INHHLAN-LRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQV-----STLETLDLSY 229
               + +              + L  L L   ++       +  V       L  L+L+ 
Sbjct: 260 GAAAVVDAFSKLEN-------IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 312

Query: 230 NPL 232
           N  
Sbjct: 313 NRF 315

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 68.9 bits (169), Expect = 5e-13
 Identities = 46/269 (17%), Positives = 85/269 (31%), Gaps = 33/269 (12%)

Query: 187 SQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYL 246
            Q F           +L +  +         ++++++ +  + + +   S+        +
Sbjct: 15  KQIFSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDI--KSVQGIQYLPNV 70

Query: 247 QNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSG 306
             L L     + I   P+  LK L  + L              +L +L  +    N  S 
Sbjct: 71  TKLFLNGNKLTDI--KPLANLKNLGWLFLDENKVKDLSSLK--DLKKLKSLSLEHNGISD 126

Query: 307 PIPSFHESRNLNYLDLSSNNLNGV-----------LNLGRNNLNGTLSDIIFPRNC-GLH 354
            I        L  L L +N +  +           L+L  N +    SDI+       L 
Sbjct: 127 -INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI----SDIVPLAGLTKLQ 181

Query: 355 ILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNF--- 411
            L LS N +  +  ++LA    L VL+  +    +       N      +     +    
Sbjct: 182 NLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 239

Query: 412 ---SGHISYPRNNVSWPLLQIVDFASNKF 437
              S    Y + NV W L +  +  S  F
Sbjct: 240 EIISDDGDYEKPNVKWHLPEFTNEVSFIF 268

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 68.2 bits (167), Expect = 7e-13
 Identities = 51/285 (17%), Positives = 92/285 (32%), Gaps = 39/285 (13%)

Query: 71  FGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQ 130
           F           NL     T  +    + L  +  +  ++            I +    Q
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNS----------DIKSVQGIQ 65

Query: 131 NLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLL--LGPINHHLANLR---- 184
            L  + +L+L+   L+ +     K L+ L NL  L L    +  L  +   L  L+    
Sbjct: 66  YLPNVTKLFLNGNKLTDI-----KPLANLKNLGWLFLDENKVKDLSSLK-DLKKLKSLSL 119

Query: 185 SH---SQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFP 241
            H   S    + +L  L +L L    +       + +++ L+TL L  N +    +    
Sbjct: 120 EHNGISDINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS--DIVPLA 175

Query: 242 KNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSS 301
             + LQNL L+    S +    +  LK L  ++L S           +NL     V  + 
Sbjct: 176 GLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 233

Query: 302 NHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDII 346
                P          +  D    N+   L    N ++      +
Sbjct: 234 GSLVTPEIIS------DDGDYEKPNVKWHLPEFTNEVSFIFYQPV 272

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 43/271 (15%), Positives = 87/271 (32%), Gaps = 52/271 (19%)

Query: 263 PIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDL 322
                    + +L+  S T  +  +   L  +  +  +++     +       N+  L L
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKS-VQGIQYLPNVTKLFL 75

Query: 323 SSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDF 382
           + N L  +  L   NL              L  L L  N+++ +    L +   L+ L  
Sbjct: 76  NGNKLTDIKPL--ANLKN------------LGWLFLDENKVKDLSS--LKDLKKLKSLSL 119

Query: 383 RNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLS 442
            +N ISD     L +   L+ L L +N     I+          L  +    N+      
Sbjct: 120 EHNGISDING--LVHLPQLESLYLGNNK----ITDITVLSRLTKLDTLSLEDNQI----- 168

Query: 443 QKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLD 502
               + +                  +     L  L +S N ++  +  +   LK ++ L+
Sbjct: 169 ----SDI----------------VPLAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLE 206

Query: 503 LSMNNLSGKIPAQLASLNFLSVLNLSYNNLV 533
           L       K     ++L   + +  +  +LV
Sbjct: 207 LFSQECLNKPINHQSNLVVPNTVKNTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 50/258 (19%), Positives = 94/258 (36%), Gaps = 52/258 (20%)

Query: 290 NLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPR 349
              +    +      +    + +E  +++ +  +++++             ++  I +  
Sbjct: 22  AFAETIKDNLKKKSVTD-AVTQNELNSIDQIIANNSDIK------------SVQGIQYLP 68

Query: 350 NCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSN 409
           N  +  L L+GN+L  + P  LAN   L  L    N + D     L++   L+ L L  N
Sbjct: 69  N--VTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHN 122

Query: 410 NFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMG 469
                IS     V  P L+ +   +NK          T +                  + 
Sbjct: 123 G----ISDINGLVHLPQLESLYLGNNKI---------TDI----------------TVLS 153

Query: 470 RFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSY 529
           R   L  L++  N ++  I      L ++++L LS N++S  + A LA L  L VL L  
Sbjct: 154 RLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFS 209

Query: 530 NNLVGQIPTAKHVLPNFN 547
              + +    +  L   N
Sbjct: 210 QECLNKPINHQSNLVVPN 227

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 47/193 (24%), Positives = 71/193 (36%), Gaps = 32/193 (16%)

Query: 72  GLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQN 131
           GL +L  L  L L +   T    T +S L +L TL L   +          I +      
Sbjct: 129 GLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQ----------ISDIVPLAG 176

Query: 132 LKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFF 191
           L +L+ LYL    +S L     +AL+ L NL VL L S   L    +H +NL        
Sbjct: 177 LTKLQNLYLSKNHISDL-----RALAGLKNLDVLELFSQECLNKPINHQSNL-------- 223

Query: 192 VANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNL 251
                 + N D S        PE I      E  ++ ++     +  +F     +  +  
Sbjct: 224 -VVPNTVKNTDGSLVT-----PEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPV-TIGK 276

Query: 252 ANTSFSGILPDPI 264
           A   F G +  P+
Sbjct: 277 AKARFHGRVTQPL 289

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.4 bits (160), Expect = 2e-12
 Identities = 30/198 (15%), Positives = 62/198 (31%), Gaps = 23/198 (11%)

Query: 193 ANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLA 252
           +      N  L Q            Q+++L  + L+   +    L        +++L + 
Sbjct: 20  STFKAYLNGLLGQSSTANITEA---QMNSLTYITLANINV--TDLTGIEYAHNIKDLTIN 74

Query: 253 NTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSG-PIPSF 311
           N   +    +PI  L  L R+ +     T     + + LT L  +D S +      +   
Sbjct: 75  NIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 312 HESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSL 371
           +    +N +DLS N     +   +                 L  L++  + +       +
Sbjct: 133 NTLPKVNSIDLSYNGAITDIMPLKTLPE-------------LKSLNIQFDGVHDYRG--I 177

Query: 372 ANCNMLQVLDFRNNHISD 389
            +   L  L   +  I  
Sbjct: 178 EDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 64.6 bits (158), Expect = 4e-12
 Identities = 31/186 (16%), Positives = 65/186 (34%), Gaps = 30/186 (16%)

Query: 74  ANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLK 133
           A + +LTY+ L++   T ++ T I     +  L +++              N+N    L 
Sbjct: 41  AQMNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNIH----------ATNYNPISGLS 88

Query: 134 ELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVA 193
            L  L +   D++         LS L +L +L++S                  S    + 
Sbjct: 89  NLERLRIMGKDVTSDKIP---NLSGLTSLTLLDISHSAH------------DDSILTKIN 133

Query: 194 NLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLAN 253
            L  + ++DLS           +  +  L++L++ ++ +             L  L   +
Sbjct: 134 TLPKVNSIDLSYNGAITD-IMPLKTLPELKSLNIQFDGV--HDYRGIEDFPKLNQLYAFS 190

Query: 254 TSFSGI 259
            +  G 
Sbjct: 191 QTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 32/212 (15%), Positives = 69/212 (32%), Gaps = 33/212 (15%)

Query: 71  FGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQ 130
              +         L             + +  L  + L++            + +    +
Sbjct: 17  IPDSTFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANI----------NVTDLTGIE 63

Query: 131 NLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFF 190
               +++L ++N+  +         +S L NL+ L +    +    +  + NL       
Sbjct: 64  YAHNIKDLTINNIHATNY-----NPISGLSNLERLRIMGKDV---TSDKIPNL------- 108

Query: 191 FVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLN 250
             + L +LT LD+S          KI  +  + ++DLSYN  +   +        L++LN
Sbjct: 109 --SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIMPLKTLPELKSLN 165

Query: 251 LANTSFSGILPDPIGILKYLTRVDLRSCSFTG 282
           +            I     L ++   S +  G
Sbjct: 166 IQFDGVHDY--RGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.5 bits (150), Expect = 4e-11
 Identities = 28/177 (15%), Positives = 55/177 (31%), Gaps = 24/177 (13%)

Query: 193 ANLLNLTNLDLSQC---DLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNL 249
           A + +LT + L+     DL G     I     ++ L ++       +       S L+ L
Sbjct: 41  AQMNSLTYITLANINVTDLTG-----IEYAHNIKDLTINNIHA--TNYNPISGLSNLERL 93

Query: 250 NLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIP 309
            +     +      +  L  LT +D+   +    I T    L ++  +D S N     I 
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM 153

Query: 310 SFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGV 366
                  L  L++  + ++    +                   L+ L      + G 
Sbjct: 154 PLKTLPELKSLNIQFDGVHDYRGIEDFP--------------KLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.4 bits (147), Expect = 9e-11
 Identities = 25/177 (14%), Positives = 66/177 (37%), Gaps = 24/177 (13%)

Query: 131 NLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFF 190
            +  L  + L N++++ L       + +  N++ L +++                 + + 
Sbjct: 42  QMNSLTYITLANINVTDL-----TGIEYAHNIKDLTINNIHA--------------TNYN 82

Query: 191 FVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLN 250
            ++ L NL  L +   D+       +  +++L  LD+S++      L        + +++
Sbjct: 83  PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142

Query: 251 LA-NTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSG 306
           L+ N + + I   P+  L  L  ++++             +  +L  +   S    G
Sbjct: 143 LSYNGAITDI--MPLKTLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 29/180 (16%), Positives = 58/180 (32%), Gaps = 54/180 (30%)

Query: 353 LHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFS 412
           L  + L+   +  +    +   + ++ L   N H ++  P  +   S+L+ L +   + +
Sbjct: 46  LTYITLANINVTDL--TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVT 101

Query: 413 GHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFK 472
                                                                  +    
Sbjct: 102 -------------------------------------------------SDKIPNLSGLT 112

Query: 473 SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 532
           SL  L++SH+A   SI +    L ++ S+DLS N     I   L +L  L  LN+ ++ +
Sbjct: 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.3 bits (126), Expect = 5e-08
 Identities = 21/178 (11%), Positives = 55/178 (30%), Gaps = 23/178 (12%)

Query: 259 ILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLN 318
            +PD     K      L   S       +   +  L ++  ++ + +  +     + N+ 
Sbjct: 16  NIPDST--FKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTD-LTGIEYAHNIK 69

Query: 319 YLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQ 378
            L +++ +      +    L+             L  L + G  +      +L+    L 
Sbjct: 70  DLTINNIHATNYNPIS--GLSN------------LERLRIMGKDVTSDKIPNLSGLTSLT 115

Query: 379 VLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNK 436
           +LD  ++   D+    +     +  + L  N     I   +       L+ ++   + 
Sbjct: 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPE---LKSLNIQFDG 170

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 14/65 (21%), Positives = 29/65 (44%)

Query: 472 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNN 531
            +L  L +    +T     +   L  +  LD+S +     I  ++ +L  ++ ++LSYN 
Sbjct: 88  SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147

Query: 532 LVGQI 536
            +  I
Sbjct: 148 AITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 14/75 (18%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 471 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYN 530
             ++  L +++   T    +    L  +E L +   +++      L+ L  L++L++S++
Sbjct: 65  AHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 531 NLVGQIPTAKHVLPN 545
                I T  + LP 
Sbjct: 123 AHDDSILTKINTLPK 137

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 40/224 (17%), Positives = 70/224 (31%), Gaps = 38/224 (16%)

Query: 71  FGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQ 130
           F    L N    NL     T  +      L  +   +  +            I +    Q
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNS----------NIQSLAGMQ 60

Query: 131 NLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFF 190
               L+EL+L +  +S L       L  L  L+ L+++   L      +L  +       
Sbjct: 61  FFTNLKELHLSHNQISDL-----SPLKDLTKLEELSVNRNRL-----KNLNGI------- 103

Query: 191 FVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLN 250
                  L+ L L   +L  +  + ++ +  LE L +  N L   S+      S L+ L+
Sbjct: 104 ---PSACLSRLFLDNNEL--RDTDSLIHLKNLEILSIRNNKL--KSIVMLGFLSKLEVLD 156

Query: 251 LANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQL 294
           L     +      +  LK +  +DL               L   
Sbjct: 157 LHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYIT 198

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 65.0 bits (159), Expect = 6e-12
 Identities = 46/257 (17%), Positives = 84/257 (32%), Gaps = 32/257 (12%)

Query: 187 SQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYL 246
           +Q F    L N    +L +  +     +K L  S ++  +   + +   SL      + L
Sbjct: 10  NQVFPDPGLANAVKQNLGKQSVTDLVSQKEL--SGVQNFNGDNSNIQ--SLAGMQFFTNL 65

Query: 247 QNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSG 306
           + L+L++   S +   P+  L  L  + +            +  L++L      +N    
Sbjct: 66  KELHLSHNQISDL--SPLKDLTKLEELSVNRNRLKNLNGIPSACLSRL---FLDNNELRD 120

Query: 307 PIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGV 366
              S    +NL  L + +N L  ++ LG  +               L +LDL GN++   
Sbjct: 121 -TDSLIHLKNLEILSIRNNKLKSIVMLGFLS--------------KLEVLDLHGNEITNT 165

Query: 367 VPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVL------VLRSNNFSGHISYPRN 420
               L     +  +D       +    +         +       +     S   SY   
Sbjct: 166 --GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDG 223

Query: 421 NVSWPLLQIVDFASNKF 437
            V W L    D  S KF
Sbjct: 224 CVLWELPVYTDEVSYKF 240

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.6 bits (111), Expect = 9e-06
 Identities = 33/242 (13%), Positives = 73/242 (30%), Gaps = 54/242 (22%)

Query: 290 NLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPR 349
            L      +      +  + S  E   +   +  ++N+  +  +                
Sbjct: 17  GLANAVKQNLGKQSVTD-LVSQKELSGVQNFNGDNSNIQSLAGMQFFT------------ 63

Query: 350 NCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSN 409
              L  L LS NQ+  +    L +   L+ L    N + +        ++ L  L L +N
Sbjct: 64  --NLKELHLSHNQISDL--SPLKDLTKLEELSVNRNRLKNLNGI---PSACLSRLFLDNN 116

Query: 410 NFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMG 469
                +    + +    L+I+   +NK           ++                  +G
Sbjct: 117 E----LRDTDSLIHLKNLEILSIRNNKL---------KSI----------------VMLG 147

Query: 470 RFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSY 529
               L  L++  N +T +       LK++  +DL+      +    +     L + N   
Sbjct: 148 FLSKLEVLDLHGNEIT-NT-GGLTRLKKVNWIDLTGQKCVNE---PVKYQPELYITNTVK 202

Query: 530 NN 531
           + 
Sbjct: 203 DP 204

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 37/218 (16%), Positives = 80/218 (36%), Gaps = 52/218 (23%)

Query: 316 NLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCN 375
           N    +L   ++  +++     L+G            +   +   + +Q +    +    
Sbjct: 20  NAVKQNLGKQSVTDLVSQ--KELSG------------VQNFNGDNSNIQSL--AGMQFFT 63

Query: 376 MLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASN 435
            L+ L   +N ISD  P  L++ + L+ L +  N    +++     +    L  +   +N
Sbjct: 64  NLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLK-NLN----GIPSACLSRLFLDNN 116

Query: 436 KFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNL 495
           +                          + T+ +   K+L  L++ +N L  SI    G L
Sbjct: 117 EL-------------------------RDTDSLIHLKNLEILSIRNNKLK-SI-VMLGFL 149

Query: 496 KQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV 533
            ++E LDL  N ++      L  L  ++ ++L+    V
Sbjct: 150 SKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCV 185

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 62.2 bits (151), Expect = 1e-10
 Identities = 43/214 (20%), Positives = 73/214 (34%), Gaps = 26/214 (12%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNL 132
           L+  + L  L+L     +  I   ++    LV L+LS     S F+ +          + 
Sbjct: 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT------LLSSC 167

Query: 133 KELRELYL---DNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQF 189
             L EL L    +     +             +  LNLS             NL+     
Sbjct: 168 SRLDELNLSWCFDFTEKHVQVA---VAHVSETITQLNLSGY---------RKNLQKSDLS 215

Query: 190 FFVANLLNLTNLDLSQCD-LRGKYPEKILQVSTLETLDLSYNPLL-QGSLPNFPKNSYLQ 247
             V    NL +LDLS    L+    ++  Q++ L+ L LS    +   +L    +   L+
Sbjct: 216 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK 275

Query: 248 NLNLANTSFSGILPDPIGILKYLTRVDLRSCSFT 281
            L +      G L     + + L  + +    FT
Sbjct: 276 TLQVFGIVPDGTL---QLLKEALPHLQINCSHFT 306

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 62.6 bits (152), Expect = 2e-10
 Identities = 73/505 (14%), Positives = 148/505 (29%), Gaps = 72/505 (14%)

Query: 43  LDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEIS-SLP 101
           ++L  +P          G     Y   +   ++ T L  + L     T +    I+ S  
Sbjct: 71  VELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFK 130

Query: 102 RLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALS-FLP 160
               L LSS E  S                 + L+EL L   D+  +             
Sbjct: 131 NFKVLVLSSCEGFSTDGLAA------IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184

Query: 161 NLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVS 220
           +L  LN+S            + +   +    V    NL +L L++     K    + +  
Sbjct: 185 SLVSLNISCL---------ASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAP 235

Query: 221 TLETLDLSY------NPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVD 274
            LE L            +  G          L+ L+    +    LP    +   LT ++
Sbjct: 236 QLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLN 295

Query: 275 LRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSN-NLNGVLNL 333
           L   +        + +L +L                  +   L  L +       G+  L
Sbjct: 296 LSYATVQ------SYDLVKL----------------LCQCPKLQRLWVLDYIEDAGLEVL 333

Query: 334 GRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDN-FP 392
                +  L ++    +    +        QG+V      C  L+ + +    +++    
Sbjct: 334 ASTCKD--LRELRVFPSEPFVMEPNVALTEQGLV-SVSMGCPKLESVLYFCRQMTNAALI 390

Query: 393 CWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCS--TTLG 450
              RN  ++    L                 +  L+ +D         + + C     L 
Sbjct: 391 TIARNRPNMTRFRLCIIE--------PKAPDYLTLEPLDIGFGA----IVEHCKDLRRLS 438

Query: 451 MRYQATNKRCRDQATEEMGRF-KSLYALNMSHNALTG-SIPSSFGNLKQIESLDLSMNNL 508
           +    T     D+  E +G + K +  L+++    +   +         +  L++     
Sbjct: 439 LSGLLT-----DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493

Query: 509 SGK-IPAQLASLNFLSVLNLSYNNL 532
             K + A  + L  +  L +S  ++
Sbjct: 494 GDKALLANASKLETMRSLWMSSCSV 518

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 58/380 (15%), Positives = 98/380 (25%), Gaps = 72/380 (18%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSL----PRLVTLDLSSREPISGFSWRLGIPNFNF 128
            A   NL  L+L            +S        LV+L++S       FS    +     
Sbjct: 152 AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFS---AL--ERL 206

Query: 129 FQNLKELRELYL-DNVDLSGLGTERCKALSFLPNLQVLNLSSCL---------LLGPINH 178
                 L+ L L   V L  L       L   P L+ L                L     
Sbjct: 207 VTRCPNLKSLKLNRAVPLEKLA----TLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262

Query: 179 HLANLRSHSQFFFV---------ANLLNLTNLDLSQCDLRGKYPEKILQVST-LETLDLS 228
               LR  S F+           +    LT L+LS   ++     K+L     L+ L + 
Sbjct: 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVL 322

Query: 229 YNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDP----------IGILKYLTRVDLRSC 278
                 G          L+ L +  +    + P+                 L  V     
Sbjct: 323 DYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCR 382

Query: 279 SFTGP----IPTSTTNLTQLFHVDFSSNHFSGPIPSF---------HESRNLNYLDLSSN 325
             T      I  +  N+T+                              ++L  L LS  
Sbjct: 383 QMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL 442

Query: 326 -NLNGVLNLGRN-------NLNGT-LSD---IIFPRNC-GLHILDLSGNQL--QGVVPKS 370
                   +G         ++     SD         C  L  L++       + ++  +
Sbjct: 443 LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALL-AN 501

Query: 371 LANCNMLQVLDFRNNHISDN 390
            +    ++ L   +  +S  
Sbjct: 502 ASKLETMRSLWMSSCSVSFG 521

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 56/197 (28%), Positives = 81/197 (41%), Gaps = 15/197 (7%)

Query: 193 ANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN--FPKNSYLQNLN 250
            +   L  LDLS+C+++         +S L TL L+ NP+   SL    F   S LQ L 
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI--QSLALGAFSGLSSLQKLV 106

Query: 251 LANTSFSGILPDPIGILKYLTRVDLRSCSFTG-PIPTSTTNLTQLFHVDFSSNHF-SGPI 308
              T+ + +   PIG LK L  +++         +P   +NLT L H+D SSN   S   
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166

Query: 309 PSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVP 368
                   +  L+LS       L+L  N +N  +    F +   L  L L  NQL+ V  
Sbjct: 167 TDLRVLHQMPLLNLS-------LDLSLNPMN-FIQPGAF-KEIRLKELALDTNQLKSVPD 217

Query: 369 KSLANCNMLQVLDFRNN 385
                   LQ +    N
Sbjct: 218 GIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.8 bits (143), Expect = 8e-10
 Identities = 49/258 (18%), Positives = 86/258 (33%), Gaps = 60/258 (23%)

Query: 284 IPTSTTNLTQLFHVDFSSNHFSGPIPS--FHESRNLNYLDLSSNNLNGVLNLGRNNLNGT 341
           +P ST NL      D S N     + S  F     L  LDLS   +             T
Sbjct: 26  LPFSTKNL------DLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQ------------T 66

Query: 342 LSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSL 401
           + D  +     L  L L+GN +Q +   + +  + LQ L     +++      + +  +L
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 402 QVLVLRSNNFSGHISYPRNNV--SWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKR 459
           + L +  N      S+       +   L+ +D +SNK           ++          
Sbjct: 127 KELNVAHNLIQ---SFKLPEYFSNLTNLEHLDLSSNKI---------QSI---------- 164

Query: 460 CRDQATEEMGRFKSL-------YALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKI 512
                       + L        +L++S N +    P +F  + +++ L L  N L    
Sbjct: 165 -------YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVP 216

Query: 513 PAQLASLNFLSVLNLSYN 530
                 L  L  + L  N
Sbjct: 217 DGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 48/212 (22%), Positives = 78/212 (36%), Gaps = 35/212 (16%)

Query: 74  ANLTNLTYLNLSHCGFTGEIPTEI-SSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNL 132
            +   L  L+LS C     I      SL  L TL L+     S       +     F  L
Sbjct: 49  FSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQS-------LAL-GAFSGL 99

Query: 133 KELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFV 192
             L++L     +L+ L       +  L  L+ LN++        ++ + + +    F   
Sbjct: 100 SSLQKLVAVETNLASLEN---FPIGHLKTLKELNVA--------HNLIQSFKLPEYF--- 145

Query: 193 ANLLNLTNLDLSQCDLRGKYPEKILQV-----STLETLDLSYNPLLQGSLPN--FPKNSY 245
           +NL NL +LDLS   ++       L+V         +LDLS NP+    +    F K   
Sbjct: 146 SNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPM--NFIQPGAF-KEIR 201

Query: 246 LQNLNLANTSFSGILPDPIGILKYLTRVDLRS 277
           L+ L L       +       L  L ++ L +
Sbjct: 202 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 32/161 (19%), Positives = 56/161 (34%), Gaps = 18/161 (11%)

Query: 263 PIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPS--FHESRNLNYL 320
           P  +      +DL           S  +  +L  +D S       I    +    +L+ L
Sbjct: 23  PDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTL 81

Query: 321 DLSSNNL----NGV---------LNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGV- 366
            L+ N +     G          L     NL  +L +        L  L+++ N +Q   
Sbjct: 82  ILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 367 VPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLR 407
           +P+  +N   L+ LD  +N I   +   LR    + +L L 
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.4 bits (149), Expect = 2e-10
 Identities = 44/173 (25%), Positives = 62/173 (35%), Gaps = 24/173 (13%)

Query: 63  SLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEI-SSLPRLVTLDLSSREPISGFSWRL 121
           +L  +++++    LTNL  L LSH      I +E    +P L  LDLSS   +      L
Sbjct: 50  NLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNH-LHTLDEFL 107

Query: 122 GIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLA 181
                  F +L+ L  L L N  +  +      A   +  LQ L LS           ++
Sbjct: 108 -------FSDLQALEVLLLYNNHIVVVDRN---AFEDMAQLQKLYLSQN--------QIS 149

Query: 182 NLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPE--KILQVSTLETLDLSYNPL 232
                        L  L  LDLS   L+       + L       L L  NPL
Sbjct: 150 RFPVEL-IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.1 bits (143), Expect = 1e-09
 Identities = 40/148 (27%), Positives = 57/148 (38%), Gaps = 27/148 (18%)

Query: 284 IPTSTTNLTQLFHVDFSSNHFS--GPIPSFHESRNLNYLDLSSNNLNGV----------- 330
           +P+ T  L      D S N+ S      +     NL+ L LS N+LN +           
Sbjct: 37  LPSYTALL------DLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL 90

Query: 331 --LNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHIS 388
             L+L  N+L+ TL + +F     L +L L  N +  V   +  +   LQ L    N IS
Sbjct: 91  RYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149

Query: 389 DNFP----CWLRNASSLQVLVLRSNNFS 412
             FP            L +L L SN   
Sbjct: 150 -RFPVELIKDGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 44/206 (21%), Positives = 68/206 (33%), Gaps = 54/206 (26%)

Query: 330 VLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISD 389
           +L+L  NNL+   ++    R   LH L LS N L  +  ++      L+ LD  +NH+  
Sbjct: 43  LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT 102

Query: 390 NFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTL 449
                  +  +L+VL+L +N                   IV    N F   ++Q      
Sbjct: 103 LDEFLFSDLQALEVLLLYNN------------------HIVVVDRNAFED-MAQ------ 137

Query: 450 GMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIP----SSFGNLKQIESLDLSM 505
                                   L  L +S N ++   P         L ++  LDLS 
Sbjct: 138 ------------------------LQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSS 172

Query: 506 NNLSGKIPAQLASLNFLSVLNLSYNN 531
           N L       L  L       L  +N
Sbjct: 173 NKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 39/206 (18%), Positives = 65/206 (31%), Gaps = 57/206 (27%)

Query: 355 ILDLSGNQLQGVVPK-SLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSG 413
           +LDLS N L  +  + +      L  L   +NH++           +L+ L L SN    
Sbjct: 43  LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN---- 98

Query: 414 HISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKS 473
                          +       F   L                                
Sbjct: 99  --------------HLHTLDEFLFSD-LQA------------------------------ 113

Query: 474 LYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKIPAQ----LASLNFLSVLNLS 528
           L  L + +N +   +   +F ++ Q++ L LS N +S + P +       L  L +L+LS
Sbjct: 114 LEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLS 171

Query: 529 YNNLVGQIPTAKHVLPNFNLHRRQLQ 554
            N L     T    LP +  +   L 
Sbjct: 172 SNKLKKLPLTDLQKLPAWVKNGLYLH 197

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 37/177 (20%), Positives = 66/177 (37%), Gaps = 22/177 (12%)

Query: 220 STLETLDLSYNPLLQGSLPN---FPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLR 276
           S    LDLS+N L    L       + + L +L L++   + I  +    +  L  +DL 
Sbjct: 39  SYTALLDLSHNNL--SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96

Query: 277 SCSFTGPIPTST-TNLTQLFHVDFSSNHFSGPIP--SFHESRNLNYLDLSSNNLNGVLNL 333
           S      +     ++L  L  +   +NH    +   +F +   L  L LS N ++     
Sbjct: 97  SNHLHT-LDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQISRFPV- 153

Query: 334 GRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDN 390
                   + D    +   L +LDLS N+L+ +    L     L        ++ +N
Sbjct: 154 ------ELIKD--GNKLPKLMLLDLSSNKLKKLPLTDLQK---LPAWVKNGLYLHNN 199

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 43/205 (20%), Positives = 65/205 (31%), Gaps = 22/205 (10%)

Query: 219 VSTLETLDLSYNPLLQGSLP-NFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRS 277
           V++   ++     L   +LP + PK+     L+L+           +     LT+++L  
Sbjct: 9   VASHLEVNCDKRNL--TALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 278 CSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNL----NGV--- 330
              T  +      L  L  +D S N              L  LD+S N L     G    
Sbjct: 65  AELTK-LQVDG-TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 331 ------LNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRN 384
                 L L  N L  TL   +      L  L L+ N L  +    L     L  L  + 
Sbjct: 123 LGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 385 NHISDNFPCWLRNASSLQVLVLRSN 409
           N +    P     +  L    L  N
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 43/158 (27%), Positives = 58/158 (36%), Gaps = 25/158 (15%)

Query: 74  ANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLK 133
             L  L  L+LSH      +P    +LP L  LD+S     S       +P     + L 
Sbjct: 74  GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-------LPL-GALRGLG 124

Query: 134 ELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVA 193
           EL+ELYL   +L  L       L+  P L+ L+L++       N    NL          
Sbjct: 125 ELQELYLKGNELKTLPPG---LLTPTPKLEKLSLAN-------N----NLTELPAGLL-N 169

Query: 194 NLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNP 231
            L NL  L L +  L    P+       L    L  NP
Sbjct: 170 GLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNP 206

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 47/241 (19%), Positives = 79/241 (32%), Gaps = 54/241 (22%)

Query: 307 PIPSFHESRNLNYLDLSSNNLNGV----------LNLGRNNLNGTLSDIIFPRNCGLHIL 356
           PI    +  +   ++    NL  +          L+L  N L  T S         L  L
Sbjct: 2   PICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLL-YTFSLATLMPYTRLTQL 60

Query: 357 DLSGNQLQGV-VPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHI 415
           +L   +L  + V  +L     L  LD  +N +  + P   +   +L VL +  N     +
Sbjct: 61  NLDRAELTKLQVDGTLPV---LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN----RL 112

Query: 416 SYPRNNVSWPL--LQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKS 473
           +         L  LQ +    N+           TL                   G    
Sbjct: 113 TSLPLGALRGLGELQELYLKGNEL---------KTL-----------------PPGLLTP 146

Query: 474 LYAL---NMSHNALTGSIPSS-FGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSY 529
              L   ++++N LT  +P+     L+ +++L L  N+L   IP      + L    L  
Sbjct: 147 TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHG 204

Query: 530 N 530
           N
Sbjct: 205 N 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.6 bits (103), Expect = 9e-05
 Identities = 46/204 (22%), Positives = 60/204 (29%), Gaps = 33/204 (16%)

Query: 77  TNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELR 136
            + T L+LS           +    RL  L+L   E          +        L  L 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE----------LTKLQVDGTLPVLG 80

Query: 137 ELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLL 196
            L L +  L  L          LP L VL++S           L +L           L 
Sbjct: 81  TLDLSHNQLQSLPL----LGQTLPALTVLDVSFN--------RLTSL-PLGAL---RGLG 124

Query: 197 NLTNLDLSQCDLRGKYPEKILQVST-LETLDLSYNPLLQGSLPN--FPKNSYLQNLNLAN 253
            L  L L   +L+   P  +L  +  LE L L+ N L    LP         L  L L  
Sbjct: 125 ELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNL--TELPAGLLNGLENLDTLLLQE 181

Query: 254 TSFSGILPDPIGILKYLTRVDLRS 277
            S   I P        L    L  
Sbjct: 182 NSLYTI-PKGFFGSHLLPFAFLHG 204

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 60.3 bits (146), Expect = 9e-10
 Identities = 52/378 (13%), Positives = 103/378 (27%), Gaps = 44/378 (11%)

Query: 71  FGLANLTNLTYLNLSHC-GFTGEIPTEISS-LPRLVTLDLSSREPISGFSWRLGIPNFNF 128
              A   +L  L L  C GFT +    I +   ++ TL +            L       
Sbjct: 132 LAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWL----HEL 187

Query: 129 FQNLKELRELYLDNVDLSGLGTERCKAL-SFLPNLQVLNLSSCLL-----LGPINHHLAN 182
            Q+   L  L     + + +  +  + +     +L  + +    +           +L  
Sbjct: 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEE 247

Query: 183 LRSHS------QFFFVANLLNLTNLDLSQC-DLRGKYPEKILQVST-LETLDLSYNPLL- 233
               S            NL+    L       +       +   +  +  LDL Y  L  
Sbjct: 248 FCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET 307

Query: 234 QGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLT- 292
           +       K   L+ L   N      L       K L R+ +   +    +      ++ 
Sbjct: 308 EDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ 367

Query: 293 -----------QLFHVDFSSNHFS--GPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLN 339
                      +L ++    +  +           +NL    L    L+    +    L+
Sbjct: 368 RGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV--LLDREERITDLPLD 425

Query: 340 GTLSDIIFPRNC-GLHILDLSGN--QLQGVVPKSLA-NCNMLQVLDFRNNHISDN-FPCW 394
             +  ++    C  L           L  +    +      ++ +       SD     +
Sbjct: 426 NGVRSLL--IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF 483

Query: 395 LRNASSLQVLVLRSNNFS 412
            R   +LQ L +R   FS
Sbjct: 484 SRGCPNLQKLEMRGCCFS 501

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 59.2 bits (143), Expect = 2e-09
 Identities = 61/500 (12%), Positives = 134/500 (26%), Gaps = 83/500 (16%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNL 132
                NL  L L              +    VT  ++                     NL
Sbjct: 69  SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTE-----------------ISNNL 111

Query: 133 KELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFV 192
           ++L+ ++   + +S L  +R  A +   +L+ L L  C          +   +      V
Sbjct: 112 RQLKSVHFRRMIVSDLDLDRL-AKARADDLETLKLDKC----------SGFTTDGLLSIV 160

Query: 193 ANLLNLTNLDLSQCDLRGKYPEKILQVS----TLETLDLSYNPLLQGSLPN----FPKNS 244
            +   +  L + +     K  + + +++    +LE L+       + S  +         
Sbjct: 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCR 220

Query: 245 YLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHF 304
            L ++ + +      L         L      S +    +P    NL     +      +
Sbjct: 221 SLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY 279

Query: 305 SGPIPS---FHESRNLNYLDLSSNNL--NGVLNLGRN-------NLNGTLSD---IIFPR 349
            GP      F  +  +  LDL    L       L +             + D    +  +
Sbjct: 280 MGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQ 339

Query: 350 NC-GLHILDLSGNQLQGVVPKSLA------------NCNMLQVLDFRNNHISDN-FPCWL 395
            C  L  L +     +  +                  C  L+ +    + I++       
Sbjct: 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399

Query: 396 RNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQA 455
               +L    L   +    I+              D   +     L   C       +  
Sbjct: 400 TYLKNLCDFRLVLLDREERIT--------------DLPLDNGVRSLLIGCKKLRRFAFYL 445

Query: 456 TNKRCRDQATEEMGRF-KSLYALNMSHNALT-GSIPSSFGNLKQIESLDLSMNNLSGK-I 512
                 D     +G++  ++  + + +   +   +         ++ L++     S + I
Sbjct: 446 RQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAI 505

Query: 513 PAQLASLNFLSVLNLSYNNL 532
            A +  L  L  L +     
Sbjct: 506 AAAVTKLPSLRYLWVQGYRA 525

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 46/404 (11%), Positives = 93/404 (23%), Gaps = 64/404 (15%)

Query: 23  STNCCDWTGVDCDEAGHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYL 82
           + NC     V   +   +  +        +      S    +   +    L     L  L
Sbjct: 216 ARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRL 275

Query: 83  NLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDN 142
            LS+ G    +P       ++  LDL        ++      +    Q    L  L   N
Sbjct: 276 GLSYMGPNE-MPILFPFAAQIRKLDLL-------YALLETEDHCTLIQKCPNLEVLETRN 327

Query: 143 VDLSGLGTERCKAL-SFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNL 201
           V    +G    + L  +   L+ L +        +      +              L  +
Sbjct: 328 V----IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYM 383

Query: 202 DLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILP 261
            +   D+  +  E I                              + + L        LP
Sbjct: 384 AVYVSDITNESLESIGT--------------------YLKNLCDFRLVLLDREERITDLP 423

Query: 262 DPIGI------LKYLTRVDLRSCSFT------GPIPTSTTNLTQLFHVDFSSNHFSGPIP 309
              G+       K L R                 I   + N+  +  + +      G + 
Sbjct: 424 LDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWM-LLGYVGESDEGLME 482

Query: 310 SFHESRNLNYLDLSSNNL--NGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVV 367
                 NL  L++         +        +             L  L + G +     
Sbjct: 483 FSRGCPNLQKLEMRGCCFSERAIAAAVTKLPS-------------LRYLWVQGYRASMTG 529

Query: 368 PKSLA---NCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRS 408
              +        ++++  R     +             +L   S
Sbjct: 530 QDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAHILAYYS 573

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 58.3 bits (141), Expect = 2e-09
 Identities = 41/233 (17%), Positives = 79/233 (33%), Gaps = 29/233 (12%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEI-SSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQN 131
            +   +L  + +S       I  ++ S+LP+L  + +     +        I     FQN
Sbjct: 50  FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL------YINP-EAFQN 102

Query: 132 LKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFF 191
           L  L+ L + N  +  L               +L++         N ++  +  +S   F
Sbjct: 103 LPNLQYLLISNTGIKHL---PDVHKIHSLQKVLLDIQD-------NINIHTIERNS---F 149

Query: 192 VANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN--FPKNSYLQNL 249
           V        L L++  ++ +        + L+ L+LS N  L+  LPN  F   S    L
Sbjct: 150 VGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVIL 207

Query: 250 NLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSN 302
           +++ T    +    +  LK L      +      +      L  L     +  
Sbjct: 208 DISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTL----EKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 53.3 bits (128), Expect = 9e-08
 Identities = 50/317 (15%), Positives = 89/317 (28%), Gaps = 77/317 (24%)

Query: 221 TLETLDLSYNPLLQGSLP-NFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCS 279
           +        + +    +P + P+N     L    T    I          L ++++    
Sbjct: 10  SNRVFLCQESKVT--EIPSDLPRN--AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 65

Query: 280 FTGPIPTST-TNLTQLFHVDFS-SNHFSGPIPS--FHESRNLNYLDLSSNNLNGVLNLGR 335
               I     +NL +L  +    +N+    I    F    NL YL +S+  +        
Sbjct: 66  VLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLPNLQYLLISNTGIK------- 117

Query: 336 NNLNGTLSDIIFPRNCGLHILDLSGN-QLQGVVPKSLANC-NMLQVLDFRNNHISDNFPC 393
                 L D+    +    +LD+  N  +  +   S         +L    N I      
Sbjct: 118 -----HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHN 171

Query: 394 WLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRY 453
              N + L  L L  NN                  + +  ++ F G              
Sbjct: 172 SAFNGTQLDELNLSDNN-----------------NLEELPNDVFHG-------------- 200

Query: 454 QATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP 513
                                  L++S   +         NLK++ +      NL  K+P
Sbjct: 201 -----------------ASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK-KLP 240

Query: 514 AQLASLNFLSVLNLSYN 530
             L  L  L   +L+Y 
Sbjct: 241 T-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 31/210 (14%), Positives = 56/210 (26%), Gaps = 23/210 (10%)

Query: 220 STLETLDLSYNPLLQGSLPN--FPKNSYLQNLNLA-NTSFSGILPDPIGILKYLTRVDLR 276
                L      L    +    F     L+ + ++ N     I  D    L  L  + + 
Sbjct: 30  RNAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87

Query: 277 SCSFTGPIPTST-TNLTQLFHVDFSSNHFSG-PIPSFHESRNLNYLDLSSNN-------- 326
             +    I      NL  L ++  S+      P      S     LD+  N         
Sbjct: 88  KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN 147

Query: 327 -------LNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQV 379
                   + +L L +N +   + +  F       +     N L+ +        +   +
Sbjct: 148 SFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVI 206

Query: 380 LDFRNNHISDNFPCWLRNASSLQVLVLRSN 409
           LD     I       L N   L+     + 
Sbjct: 207 LDISRTRIHSLPSYGLENLKKLRARSTYNL 236

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.1 bits (137), Expect = 9e-09
 Identities = 38/235 (16%), Positives = 59/235 (25%), Gaps = 39/235 (16%)

Query: 177 NHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGS 236
              L   R        A    L   +LS  +       ++     L+ L+      L   
Sbjct: 330 ECVLLKDRPECWCRDSATDEQLFRCELS-VEKSTVLQSELESCKELQELEPENKWCLLTI 388

Query: 237 LPNFPKNSYLQNLNLANTSFSGI---------------------LPDPIGILKYLTRVDL 275
           +        L         FS +                               +  + L
Sbjct: 389 ILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHL 448

Query: 276 RSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGR 335
                T         L  + H+D S N      P+    R L  L  S N L  V  +  
Sbjct: 449 AHKDLTVLCHLE--QLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVAN 506

Query: 336 NNLNGTLSDIIFPRNCGLHILDLSGNQLQGV-VPKSLANCNMLQVLDFRNNHISD 389
                            L  L L  N+LQ     + L +C  L +L+ + N +  
Sbjct: 507 LPR--------------LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.5 bits (125), Expect = 2e-07
 Identities = 37/181 (20%), Positives = 59/181 (32%), Gaps = 12/181 (6%)

Query: 353 LHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFS 412
           L   +LS  +   V+   L +C  LQ L+  N          +R    L         FS
Sbjct: 351 LFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS 409

Query: 413 G-HISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRF 471
                 P        L+      N             L + +              + + 
Sbjct: 410 TLKAVDPMRAAYLDDLRSKFLLENSVLKME-YADVRVLHLAH------KDLTVLCHLEQL 462

Query: 472 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNN 531
             +  L++SHN L  ++P +   L+ +E L  S N L   +   +A+L  L  L L  N 
Sbjct: 463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNR 519

Query: 532 L 532
           L
Sbjct: 520 L 520

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.9 bits (121), Expect = 7e-07
 Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 18/110 (16%)

Query: 72  GLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSR--EPISGFSWRL-------- 121
            L  L  +T+L+LSH      +P  +++L  L  L  S    E + G +  L        
Sbjct: 458 HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVDGVA-NLPRLQELLL 515

Query: 122 ------GIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVL 165
                          +   L  L L    L      + +    LP++  +
Sbjct: 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.4 bits (117), Expect = 2e-06
 Identities = 42/200 (21%), Positives = 68/200 (34%), Gaps = 18/200 (9%)

Query: 43  LDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPR 102
            +LS E   + + E  S    LQ ++ +     LT +  +              +     
Sbjct: 354 CELSVEKSTVLQSELES-CKELQELEPENKWCLLTIILLMR--ALDPLLYEKETLQYFST 410

Query: 103 LVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNL 162
           L  +D      +     +  + N        ++R L+L + DL+ L       L  L  +
Sbjct: 411 LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-----CHLEQLLLV 465

Query: 163 QVLNLSSCLL--LGPINHHLANLR----SHSQFFFV---ANLLNLTNLDLSQCDLRG-KY 212
             L+LS   L  L P    L  L     S +    V   ANL  L  L L    L+    
Sbjct: 466 THLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAA 525

Query: 213 PEKILQVSTLETLDLSYNPL 232
            + ++    L  L+L  N L
Sbjct: 526 IQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 48.6 bits (115), Expect = 4e-06
 Identities = 36/254 (14%), Positives = 69/254 (27%), Gaps = 39/254 (15%)

Query: 289 TNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFP 348
           T            +              L   +LS      + +   +       +    
Sbjct: 323 TGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENK 382

Query: 349 RNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDF--------RNNHISDNFPCWLRNASS 400
                 IL +          ++L   + L+ +D           +             + 
Sbjct: 383 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYAD 442

Query: 401 LQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRC 460
           ++VL L   +    ++   +     L+  +D + N+            L           
Sbjct: 443 VRVLHLAHKD----LTVLCHLEQLLLVTHLDLSHNRL---------RAL----------- 478

Query: 461 RDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG-KIPAQLASL 519
                  +   + L  L  S NAL  ++     NL +++ L L  N L        L S 
Sbjct: 479 ----PPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSC 532

Query: 520 NFLSVLNLSYNNLV 533
             L +LNL  N+L 
Sbjct: 533 PRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 46.7 bits (110), Expect = 2e-05
 Identities = 55/404 (13%), Positives = 113/404 (27%), Gaps = 74/404 (18%)

Query: 126 FNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRS 185
           + + + L    E +     +     E C ++ F   L V +    LLL      L+    
Sbjct: 229 WFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWR 288

Query: 186 HSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNS- 244
                   + + L +L      L  + P+   +V    +       LL+     + ++S 
Sbjct: 289 TPDGRNRPSHVWLCDLPA--ASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSA 346

Query: 245 YLQNLNLANTSF--SGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSN 302
             + L     S   S +L   +   K L  ++  +      I      L  L +   +  
Sbjct: 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ 406

Query: 303 HFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQ 362
           +FS           L  +D     +         +     + ++      + +L L+   
Sbjct: 407 YFS----------TLKAVD----PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKD 452

Query: 363 LQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNV 422
           L  +    L    ++  LD  +N +    P  L     L+VL    N             
Sbjct: 453 LTVL--CHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDN------------- 496

Query: 423 SWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHN 482
                 + +                                  + +     L  L + +N
Sbjct: 497 -----ALENV---------------------------------DGVANLPRLQELLLCNN 518

Query: 483 ALTG-SIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVL 525
            L   +      +  ++  L+L  N+L  +   Q      L  +
Sbjct: 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 54/248 (21%), Positives = 84/248 (33%), Gaps = 34/248 (13%)

Query: 221 TLETLDLSYNPLLQGSLP-NFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCS 279
              ++D S   L   ++P N P +   + L+L +   S +       L  L  + L    
Sbjct: 17  NKNSVDCSSKKLT--AIPSNIPAD--TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK 72

Query: 280 FTGPIPTST-TNLTQLFHVDFSSNHFSGPIPS--FHESRNLNYLDLSSNNL----NGV-- 330
               +P      L  L  +  + N     +P   F +  NL  L L  N L      V  
Sbjct: 73  LQT-LPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFD 130

Query: 331 -------LNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFR 383
                  L+LG N L  +L   +F +   L  L L  NQL+ V   +      L+ L   
Sbjct: 131 SLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189

Query: 384 NNHISDNFPCWLRNASSLQVLVLRSNNFS---GHISYPRNNVSWPLLQIVDFASNKFGGR 440
           NN +         +   L++L L+ N +      I Y      W    +   A    GG 
Sbjct: 190 NNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAK---W----LKKKADEGLGGV 242

Query: 441 LSQKCSTT 448
            +  C   
Sbjct: 243 DTAGCEKG 250

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.1 bits (128), Expect = 8e-08
 Identities = 41/182 (22%), Positives = 62/182 (34%), Gaps = 19/182 (10%)

Query: 220 STLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCS 279
           +  + LDL  N L       F + + L+ L L +     +       LK L  + +    
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96

Query: 280 FTGPIPTST-TNLTQLFHVDFSSNHFSGPIPS--FHESRNLNYLDLSSNNL----NGV-- 330
               +P      L  L  +    N     +P   F     L YL L  N L     GV  
Sbjct: 97  LQA-LPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154

Query: 331 -------LNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFR 383
                  L L  N L   + +  F +   L  L L  NQL+ V   +  +   L++L  +
Sbjct: 155 KLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213

Query: 384 NN 385
            N
Sbjct: 214 EN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 43/181 (23%), Positives = 62/181 (34%), Gaps = 25/181 (13%)

Query: 74  ANLTNLTYLNLSHCGFTGEIPTEI-SSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNL 132
             LT L  L L+       +P  I   L  L TL ++  +  +       +P    F  L
Sbjct: 58  HRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA-------LPI-GVFDQL 108

Query: 133 KELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFV 192
             L EL LD   L  L     +    L  L  L+L               L+S  +  F 
Sbjct: 109 VNLAELRLDRNQLKSLPP---RVFDSLTKLTYLSLGYN-----------ELQSLPKGVF- 153

Query: 193 ANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLA 252
             L +L  L L    L+        +++ L+TL L  N L +     F     L+ L L 
Sbjct: 154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213

Query: 253 N 253
            
Sbjct: 214 E 214

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 45/204 (22%), Positives = 75/204 (36%), Gaps = 29/204 (14%)

Query: 77  TNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELR 136
            +   L+L     +         L +L  L L+  +  +       +P    F+ LK L 
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-------LPA-GIFKELKNLE 88

Query: 137 ELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLL 196
            L++ +  L  L          L NL  L L         N     L+S     F  +L 
Sbjct: 89  TLWVTDNKLQALPIG---VFDQLVNLAELRLDR-------NQ----LKSLPPRVF-DSLT 133

Query: 197 NLTNLDLSQCDLRGKYPEKIL-QVSTLETLDLSYNPLLQGSLPN--FPKNSYLQNLNLAN 253
            LT L L   +L+   P+ +  ++++L+ L L  N L    +P   F K + L+ L L N
Sbjct: 134 KLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQL--KRVPEGAFDKLTELKTLKLDN 190

Query: 254 TSFSGILPDPIGILKYLTRVDLRS 277
                +       L+ L  + L+ 
Sbjct: 191 NQLKRVPEGAFDSLEKLKMLQLQE 214

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 13/137 (9%)

Query: 308 IPSFHESRNLNYLDLSSNNLNGVLNLGRN-------NLNGTLSDII--FPRNCGLHILDL 358
              +  +     LDL    +  + NLG         + +      +  FP    L  L +
Sbjct: 12  AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLV 71

Query: 359 SGNQLQGVVPKSLANCNMLQVLDFRNNHISD-NFPCWLRNASSLQVLVLRSNNFSGHISY 417
           + N++  +          L  L   NN + +      L +  SL  L +  N  +    Y
Sbjct: 72  NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHY 131

Query: 418 PRNNVSW--PLLQIVDF 432
            R  V +  P ++++DF
Sbjct: 132 -RLYVIYKVPQVRVLDF 147

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 11/88 (12%)

Query: 194 NLLNLTNLDLSQCDLRGKYPEKI----LQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNL 249
           N +    LDL    +       I      +   + +D S N +    L  FP    L+ L
Sbjct: 17  NAVRDRELDLRGYKI-----PVIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTL 69

Query: 250 NLANTSFSGILPDPIGILKYLTRVDLRS 277
            + N     I       L  LT + L +
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTN 97

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 25/135 (18%), Positives = 46/135 (34%), Gaps = 25/135 (18%)

Query: 72  GLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQN 131
              N      L+L        I    ++L +   +D S             I   + F  
Sbjct: 14  QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFS----------DNEIRKLDGFPL 62

Query: 132 LKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFF 191
           L+ L+ L ++N  +  +G         LP+L  L L++            +L        
Sbjct: 63  LRRLKTLLVNNNRICRIGEG---LDQALPDLTELILTNN-----------SLVELGDLDP 108

Query: 192 VANLLNLTNLDLSQC 206
           +A+L +LT L + + 
Sbjct: 109 LASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 471 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYN 530
                A++ S N +   +   F  L+++++L ++ N +         +L  L+ L L+ N
Sbjct: 41  LDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN 98

Query: 531 NL 532
           +L
Sbjct: 99  SL 100

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 2e-07
 Identities = 70/442 (15%), Positives = 128/442 (28%), Gaps = 132/442 (29%)

Query: 81  YLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGI----PNFNFFQNLKELR 136
           +LNL +C     +   +  L   +  + +SR   S  + +L I             K   
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS-SNIKLRIHSIQAELRRLLKSKPYE 244

Query: 137 E--LYLDNV---------DLSGLGTERCKAL---------SFLPNLQVLNLSSCLLLGPI 176
              L L NV         +L       CK L          FL      ++S       +
Sbjct: 245 NCLLVLLNVQNAKAWNAFNL------SCKILLTTRFKQVTDFLSAATTTHIS-------L 291

Query: 177 NHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTL-------------- 222
           +HH   L        +   L+    DL         P ++L  +                
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDL---------PREVLTTNPRRLSIIAESIRDGLA 342

Query: 223 --------------ETLDLSYNPL----LQG---SLPNFPKNSYL--QNLNL--ANTSFS 257
                           ++ S N L     +     L  FP ++++    L+L   +   S
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402

Query: 258 GILPDPIGILKYLTR---VDLRSCSFTGPIP-------TSTTNLTQLFHVDFSSNHFSGP 307
               D + ++  L +   V+ +    T  IP           N   L H           
Sbjct: 403 ----DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL-HRSI-------- 449

Query: 308 IPSFHESRNLNYLDLSSNNLNGVL--NLGR--NNLNGTLSDIIFPRNCGLHILDLS--GN 361
           +  ++  +  +  DL    L+     ++G    N+       +F        LD      
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM----VFLDFRFLEQ 505

Query: 362 QLQGVVPKSLAN---CNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYP 418
           +++       A+    N LQ L F   +I DN P + R  +++        +F       
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL-------DFL--PKIE 556

Query: 419 RNNVSWPLLQIVDFA-SNKFGG 439
            N +      ++  A   +   
Sbjct: 557 ENLICSKYTDLLRIALMAEDEA 578

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 3e-05
 Identities = 58/397 (14%), Positives = 108/397 (27%), Gaps = 107/397 (26%)

Query: 225 LDLSYNPLLQGSLPNFPKN-------SYLQNLNLANTSFSGIL--PDPIGILKYLTRVDL 275
               Y  +L      F  N          +++ L+      I+   D +     L     
Sbjct: 14  HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI-LSKEEIDHIIMSKDAVSGTLRL--FWT 70

Query: 276 RSCSFTGPIPTSTTNLTQLF-----HVDFS---------SNHFSGPIPSFHESRNLNYLD 321
                   + +    + Q F      +++              S     + E R+  Y  
Sbjct: 71  --------LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY-- 120

Query: 322 LSSNNLNGVLNLGR----NNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKS-LANCNM 376
            + N +    N+ R      L   L ++   +N  +  +  SG        K+ +A    
Sbjct: 121 -NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG--------KTWVA---- 167

Query: 377 LQVLDFRNNHISDNFPC---WL--RNASSLQVLVLRSNNFSGHISYPRN-------NVSW 424
           L V    +  +         WL  +N +S + ++         I            N+  
Sbjct: 168 LDVC--LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225

Query: 425 PLLQIVDFASNKFGGRLSQKC---------STTLGMRYQATNKRCRDQATEEMGRFKS-- 473
            +  I          +  + C         +        A N  C+   T    RFK   
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW----NAFNLSCKILLTT---RFKQVT 278

Query: 474 --LYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS---GKIPAQLASLNFLSVLNLS 528
             L A   +H +L      S   L   E   L +  L      +P ++ + N        
Sbjct: 279 DFLSAATTTHISL---DHHSMT-LTPDEVKSLLLKYLDCRPQDLPREVLTTNPR------ 328

Query: 529 YNNLVGQIPTAKHVLPNFNLHRRQLQAMKL---IGSS 562
               +  I  +         + + +   KL   I SS
Sbjct: 329 ---RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 67/422 (15%), Positives = 121/422 (28%), Gaps = 121/422 (28%)

Query: 212 YPEKILQVSTLETLDLSYNPLL-----QGSLPNFPKNSYLQNLN-LANTSFSGILPDPIG 265
             E+++Q    E L ++Y  L+     +   P+     Y++  + L N        D   
Sbjct: 74  KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN--------DNQV 125

Query: 266 ILKY-LTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHES----RNLNYL 320
             KY ++R+         P       L +L           G +    ++          
Sbjct: 126 FAKYNVSRLQ--------PYLKLRQALLELRPAKNVLID--G-VLGSGKTWVALDVCLSY 174

Query: 321 DLSSNNLNGV--LNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQG------------- 365
            +       +  LNL   N   +   ++      L+ +D +                   
Sbjct: 175 KVQCKMDFKIFWLNLKNCN---SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231

Query: 366 ------VVPKSLANCNMLQVLDFRNNHISD-------NFPCWL----RNASSLQVLVLRS 408
                 +  K   NC  L VL     ++ +       N  C +    R       L   S
Sbjct: 232 AELRRLLKSKPYENC--LLVLL----NVQNAKAWNAFNLSCKILLTTRFKQVTDFL---S 282

Query: 409 NNFSGHISYPRNNVSWPLL--QIVDFASNKFGGRLS----QKCST---TLGMRYQATNKR 459
              + HIS   ++ S  L   ++          R      +  +T    L +      + 
Sbjct: 283 AATTTHISL--DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI----IAES 336

Query: 460 CRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIES----LDLSMNNLSGKIPAQ 515
            RD     +  +      +++ + LT  I SS   L+  E       LS+   S  IP  
Sbjct: 337 IRD----GLATWD--NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390

Query: 516 LAS--------------LNFL---SVLNLSYNNLVGQIP-----TAKHVLPNFNLHRRQL 553
           L S              +N L   S++          IP         +   + LHR  +
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450

Query: 554 QA 555
             
Sbjct: 451 DH 452

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 30/212 (14%), Positives = 66/212 (31%), Gaps = 23/212 (10%)

Query: 220 STLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCS 279
              E   ++   +    +P+ P +   Q L L  T    I       L  ++R+ +    
Sbjct: 11  HQEEDFRVTCKDIQ--RIPSLPPS--TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66

Query: 280 FTGPIPTST-TNLTQLFHVDFSSNHFSGPIPS--FHESRNLNYLDLSSNNL--------- 327
               + + +  NL+++ H++  +      I      E   L +L + +  L         
Sbjct: 67  TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKV 126

Query: 328 -----NGVLNLGRNNLNGTLSDIIFPRNCG-LHILDLSGNQLQGVVPKSLANCNMLQVLD 381
                  +L +  N    ++    F   C     L L  N    V   +     +  V  
Sbjct: 127 YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYL 186

Query: 382 FRNNHISDNFPCWLRNA-SSLQVLVLRSNNFS 412
            +N +++           S   +L +   + +
Sbjct: 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 41/210 (19%), Positives = 75/210 (35%), Gaps = 24/210 (11%)

Query: 197 NLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN--FPKNSYLQNLNLANT 254
           +   L L +  LR         +  +  + +S +  LQ  L +  F   S + ++ + NT
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNT 90

Query: 255 -SFSGILPDPIGILKYLTRVDLRSCSFTG-PIPTSTTNLTQLFHVDFSSNHFSGPIP--S 310
            + + I PD +  L  L  + + +      P  T   +    F ++ + N +   IP  +
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 311 FHE-SRNLNYLDLSSNNLNGV------------LNLGRNNLNGTLSDIIFPR-NCGLHIL 356
           F         L L +N    V            + L +N     +    F     G  +L
Sbjct: 151 FQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLL 210

Query: 357 DLSGNQLQGVVPKSLANCNMLQVLDFRNNH 386
           D+S   +  +  K L +   L+ L  RN  
Sbjct: 211 DVSQTSVTALPSKGLEH---LKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 31/210 (14%), Positives = 76/210 (36%), Gaps = 30/210 (14%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEI-SSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQN 131
            +NL N++ + +S      ++ +    +L ++  +++ +   ++       I   +  + 
Sbjct: 51  FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT------YIDP-DALKE 103

Query: 132 LKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFF 191
           L  L+ L + N  L          +       +L ++        N ++ ++  ++    
Sbjct: 104 LPLLKFLGIFNTGLKMFPDLT--KVYSTDIFFILEITD-------NPYMTSIPVNA---- 150

Query: 192 VANLLNLT-NLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN--FPK-NSYLQ 247
              L N T  L L                + L+ + L+ N  L   +    F    S   
Sbjct: 151 FQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLT-VIDKDAFGGVYSGPS 208

Query: 248 NLNLANTSFSGILPDPIGILKYLTRVDLRS 277
            L+++ TS + +   P   L++L  +  R+
Sbjct: 209 LLDVSQTSVTAL---PSKGLEHLKELIARN 235

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 36/270 (13%), Positives = 76/270 (28%), Gaps = 72/270 (26%)

Query: 270 LTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPS--FHESRNLNYLDLSSNNL 327
                +        IP+   +   L        H    IPS  F    N++ + +S +  
Sbjct: 13  EEDFRVTCKDIQR-IPSLPPSTQTL---KLIETHLRT-IPSHAFSNLPNISRIYVSIDVT 67

Query: 328 NGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQ-LQGVVPKSLANCNMLQVLDFRNNH 386
              L               F     +  +++   + L  + P +L    +L+ L   N  
Sbjct: 68  LQQLESH-----------SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG 116

Query: 387 ISDNFP--CWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQK 444
           +   FP    + +     +L +  N                   +     N F G  ++ 
Sbjct: 117 LKM-FPDLTKVYSTDIFFILEITDNP-----------------YMTSIPVNAFQGLCNE- 157

Query: 445 CSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLS 504
                                           L + +N  T S+     N  +++++ L+
Sbjct: 158 -----------------------------TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187

Query: 505 MNNLSGKIPAQLAS--LNFLSVLNLSYNNL 532
            N     I         +  S+L++S  ++
Sbjct: 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 49/296 (16%), Positives = 92/296 (31%), Gaps = 71/296 (23%)

Query: 153 CKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKY 212
            +  S    +  L+LS   L       L          F     ++T+L+LS   L  K 
Sbjct: 15  EEFTSIPHGVTSLDLSLNNLYSISTVELIQA-------FANTPASVTSLNLSGNSLGFKN 67

Query: 213 PEKILQV-----STLETLDLSYNPLLQGSLPNF-----PKNSYLQNLNLANTSFSGILPD 262
            ++++Q+     + + +L+LS N L   S              +  L+L    FS     
Sbjct: 68  SDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSS 127

Query: 263 PIG-----ILKYLTRVDLRSCSFTGP--------IPTSTTNLTQLFHVDFSSNHFSGP-- 307
                   +   +T ++LR               +     N+  L   +   N+ +    
Sbjct: 128 EFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL---NLRGNNLASKNC 184

Query: 308 ------IPSFHESRNLNYLDLSSNNLNG------------------VLNLGRNNLNGTLS 343
                 + S   S  +  LDLS+N L                     LNL  N L+G   
Sbjct: 185 AELAKFLASIPAS--VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242

Query: 344 DII---FPRNCGLHILDLSGNQLQGVVPK-------SLANCNMLQVLDFRNNHISD 389
           + +         L  + L  + ++ +  +       +  N   + ++D     I  
Sbjct: 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 28/172 (16%), Positives = 60/172 (34%), Gaps = 25/172 (14%)

Query: 77  TNLTYLNLSHCGFTGEIPTEISSL-----PRLVTLDLSSREPISGFSWRLGIPNFNFFQN 131
            ++T L+LS      +   E++ +       +V+L+L            L         +
Sbjct: 196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK----LLKDS 251

Query: 132 LKELRELYLDNVDLSGLGTERCK----ALSFLPNLQVLNLSSCLLLGPINHHLANLRSHS 187
           LK L+ +YLD   +  +  E+CK    A   +  + +++ +   +    +  ++NL    
Sbjct: 252 LKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIREL 311

Query: 188 QFFFVANLLNLTNLDLSQCDL----RGKYPEKILQV-STLETLDLSYNPLLQ 234
                          L    L    + +   + L +   L     +  PLL+
Sbjct: 312 SG-------KADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLLE 356

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 51.9 bits (123), Expect = 3e-07
 Identities = 31/168 (18%), Positives = 52/168 (30%), Gaps = 41/168 (24%)

Query: 71  FGLANLTNLTYLNLSHCGFTGEIPTEI--SSLPRLVTLDLSSREPISGFSWRLGIPNFNF 128
            G     NL  L +   G    +  +I  S LP L  L L            +G+ ++ F
Sbjct: 187 IGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY-----------VGVEDYGF 235

Query: 129 FQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQ 188
             ++   R L            +R       PNL+ L +        +            
Sbjct: 236 DGDMNVFRPL---------FSKDRF------PNLKWLGIVDAEEQNVVVEMFLESD---- 276

Query: 189 FFFVANLLNLTNLDLSQCDLRGKYPEKILQV----STLETLDLSYNPL 232
                 L  L  +D+S   L  +    +L        L+ +++ YN L
Sbjct: 277 -----ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.8 bits (102), Expect = 1e-04
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 7/71 (9%)

Query: 469 GRFKSLYALNMSHNALTGSIPSSFGN---LKQIESLDLSMNNLSGK----IPAQLASLNF 521
            RF +L  L +        +   F     L Q+E++D+S   L+ +    +   +  +  
Sbjct: 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH 308

Query: 522 LSVLNLSYNNL 532
           L  +N+ YN L
Sbjct: 309 LKFINMKYNYL 319

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 51.3 bits (122), Expect = 4e-07
 Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 12/89 (13%)

Query: 86  HCGFTG--EIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNV 143
            C   G  +    +     L  L + +++ +     R         + L ELR L +   
Sbjct: 14  RCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRD-------LRGLGELRNLTIVKS 66

Query: 144 DLSGLGTERCKALSFLPNLQVLNLSSCLL 172
            L  +  +   A  F P L  LNLS   L
Sbjct: 67  GLRFVAPD---AFHFTPRLSRLNLSFNAL 92

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 4e-05
 Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 12/115 (10%)

Query: 297 VDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHIL 356
           +  + +     +     + NL  L + +      L          L  +       L  L
Sbjct: 13  LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLE------LRDLRGLG-----ELRNL 61

Query: 357 DLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNF 411
            +  + L+ V P +      L  L+   N +       ++   SLQ LVL  N  
Sbjct: 62  TIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 20/107 (18%), Positives = 36/107 (33%), Gaps = 8/107 (7%)

Query: 453 YQATNKRC-RDQATEEMGRFKSLYA---LNMSHNALTGSIPS-SFGNLKQIESLDLSMNN 507
           + ++  RC RD A + +           L + +      +       L ++ +L +  + 
Sbjct: 8   HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67

Query: 508 LSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKHVLPNFNLHRRQLQ 554
           L    P        LS LNLS+N L          +   +L    L 
Sbjct: 68  LRFVAPDAFHFTPRLSRLNLSFNALESLSWKT---VQGLSLQELVLS 111

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.6 bits (97), Expect = 4e-04
 Identities = 28/215 (13%), Positives = 50/215 (23%), Gaps = 8/215 (3%)

Query: 230 NPLLQGSLPNFPKNSYLQNLNLA-NTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTST 288
                 SL + P    L  L +        +    +  L  L  + +         P + 
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 289 TNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLN---GVLNLGRNNLNGTLSDI 345
               +L  ++ S N          +  +L  L LS N L+    +  L R    G     
Sbjct: 77  HFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVP 136

Query: 346 IFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLV 405
                C               VP          V    +        C +      Q   
Sbjct: 137 EQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGDDVL----LRCQVEGRGLEQAGW 192

Query: 406 LRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGR 440
           + +             +    L + +  S+     
Sbjct: 193 ILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKN 227

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.3 bits (96), Expect = 6e-04
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 12/103 (11%)

Query: 154 KALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYP 213
             L    NL  L + +         HL +L        +  L  L NL + +  LR   P
Sbjct: 25  HHLPGAENLTELYIEN-------QQHLQHLELRD----LRGLGELRNLTIVKSGLRFVAP 73

Query: 214 EKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSF 256
           +       L  L+LS+N L   S       S LQ L L+    
Sbjct: 74  DAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 44/166 (26%), Positives = 60/166 (36%), Gaps = 21/166 (12%)

Query: 263 PIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSG-PIPSFHESRNLNYLD 321
           P GI     ++DL+S         +   LT+L  ++   N         F +   L  L 
Sbjct: 30  PSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89

Query: 322 LSSNNL----NGV---------LNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGV-- 366
           L++N L     GV         L LG N L  +L   +F R   L  L L+ NQLQ +  
Sbjct: 90  LANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPA 148

Query: 367 -VPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNF 411
                L N   LQ L    N +             LQ + L  N F
Sbjct: 149 GAFDKLTN---LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 41/171 (23%), Positives = 56/171 (32%), Gaps = 27/171 (15%)

Query: 223 ETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGI---LKYLTRVDLRS-- 277
           E LDL    L   S   F   + L  LNL       +     G+   L  L  + L +  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL---SAGVFDDLTELGTLGLANNQ 94

Query: 278 -CSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPS--FHESRNLNYLDLSSNNLNGVLNLG 334
             S    +    T L +L       N     +PS  F     L  L L++N L       
Sbjct: 95  LASLPLGVFDHLTQLDKL---YLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ------ 144

Query: 335 RNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNN 385
                 ++    F +   L  L LS NQLQ V   +      LQ +    N
Sbjct: 145 ------SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 20/131 (15%)

Query: 284 IPTSTTNLTQLFHVDFSSNHFSG--PIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGT 341
           IP  T  L        ++N F+       F +   L  ++ S+N +              
Sbjct: 30  IPQYTAEL------RLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT------------D 71

Query: 342 LSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSL 401
           + +  F    G++ + L+ N+L+ V  K       L+ L  R+N I+          SS+
Sbjct: 72  IEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSV 131

Query: 402 QVLVLRSNNFS 412
           ++L L  N  +
Sbjct: 132 RLLSLYDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 16/138 (11%)

Query: 263 PIGILKYLTRVDLRSCSFTGPIPTST-TNLTQLFHVDFSSNHFSG-PIPSFHESRNLNYL 320
           P  I +Y   + L +  FT    T     L QL  ++FS+N  +     +F  +  +N +
Sbjct: 27  PEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEI 86

Query: 321 DLSSNNL----NGV---------LNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVV 367
            L+SN L    + +         L L  N +   + +  F     + +L L  NQ+  V 
Sbjct: 87  LLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVA 145

Query: 368 PKSLANCNMLQVLDFRNN 385
           P +    + L  L+   N
Sbjct: 146 PGAFDTLHSLSTLNLLAN 163

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 15/96 (15%)

Query: 315 RNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANC 374
             L +L   +  L  + NL              P+   L  L+LS N++ G +      C
Sbjct: 42  EELEFLSTINVGLTSIANL--------------PKLNKLKKLELSDNRVSGGLEVLAEKC 87

Query: 375 NMLQVLDFRNNHISD-NFPCWLRNASSLQVLVLRSN 409
             L  L+   N I D +    L+   +L+ L L + 
Sbjct: 88  PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 7/94 (7%)

Query: 72  GLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQN 131
            L  L  L  L LS    +G +       P L  L+LS  + I   S           + 
Sbjct: 59  NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK-IKDLS------TIEPLKK 111

Query: 132 LKELRELYLDNVDLSGLGTERCKALSFLPNLQVL 165
           L+ L+ L L N +++ L   R      LP L  L
Sbjct: 112 LENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 3/77 (3%)

Query: 457 NKRCRDQATEEMG-RFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQ 515
           N R  +   E +   F+ L  L+  +  LT SI ++   L +++ L+LS N +SG +   
Sbjct: 26  NSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGGLEVL 83

Query: 516 LASLNFLSVLNLSYNNL 532
                 L+ LNLS N +
Sbjct: 84  AEKCPNLTHLNLSGNKI 100

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 15/122 (12%)

Query: 270 LTRVDLRSCSFT-GPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLN 328
           +  + L +     G +   T    +L  +   +   +  I +  +   L  L+LS N ++
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-IANLPKLNKLKKLELSDNRVS 77

Query: 329 GVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGV-VPKSLANCNMLQVLDFRNNHI 387
           G L +                   L  L+LSGN+++ +   + L     L+ LD  N  +
Sbjct: 78  GGLEVLAEKCP------------NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

Query: 388 SD 389
           ++
Sbjct: 126 TN 127

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 17/125 (13%)

Query: 130 QNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQF 189
           +   +++EL LDN   +    E          L+ L+  +  L       +ANL      
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGL--TDEFEELEFLSTINVGL-----TSIANL------ 60

Query: 190 FFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPL-LQGSLPNFPKNSYLQN 248
                L  L  L+LS   + G       +   L  L+LS N +    ++    K   L++
Sbjct: 61  ---PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117

Query: 249 LNLAN 253
           L+L N
Sbjct: 118 LDLFN 122

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 12/99 (12%)

Query: 72  GLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQN 131
                  L +L+  + G T  I   +  L +L  L+LS          R+        + 
Sbjct: 37  LTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDN--------RVSGGLEVLAEK 86

Query: 132 LKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSC 170
              L  L L    +  L T   + L  L NL+ L+L +C
Sbjct: 87  CPNLTHLNLSGNKIKDLST--IEPLKKLENLKSLDLFNC 123

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.1 bits (110), Expect = 5e-06
 Identities = 26/115 (22%), Positives = 38/115 (33%), Gaps = 20/115 (17%)

Query: 284 IPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNL----NGV--------- 330
           IP   T L          N F+         ++L  +DLS+N +    N           
Sbjct: 29  IPRDVTEL------YLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLT 82

Query: 331 LNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNN 385
           L L  N L   +    F     L +L L GN +  V   +  + + L  L    N
Sbjct: 83  LILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 6e-06
 Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 15/96 (15%)

Query: 315 RNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANC 374
            NL +L L +  L  V NL              P+   L  L+LS N++ G +       
Sbjct: 49  VNLEFLSLINVGLISVSNL--------------PKLPKLKKLELSENRIFGGLDMLAEKL 94

Query: 375 NMLQVLDFRNNHISD-NFPCWLRNASSLQVLVLRSN 409
             L  L+   N + D +    L+    L+ L L + 
Sbjct: 95  PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 7e-05
 Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 7/94 (7%)

Query: 72  GLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQN 131
            L  L  L  L LS     G +      LP L  L+LS  + +   S           + 
Sbjct: 66  NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK-LKDIS------TLEPLKK 118

Query: 132 LKELRELYLDNVDLSGLGTERCKALSFLPNLQVL 165
           L+ L+ L L N +++ L   R      LP L  L
Sbjct: 119 LECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 14/107 (13%)

Query: 284 IPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLS 343
           I   T     L  +   +      + +  +   L  L+LS N + G L++    L     
Sbjct: 41  IEGLTAEFVNLEFLSLINVGLIS-VSNLPKLPKLKKLELSENRIFGGLDMLAEKLP---- 95

Query: 344 DIIFPRNCGLHILDLSGNQLQGVVP-KSLANCNMLQVLDFRNNHISD 389
                    L  L+LSGN+L+ +   + L     L+ LD  N  +++
Sbjct: 96  --------NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN 134

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 3/77 (3%)

Query: 457 NKRCRDQATEEMG-RFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQ 515
           N +  D   E +   F +L  L++ +  L  S+ S+   L +++ L+LS N + G +   
Sbjct: 33  NCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDML 90

Query: 516 LASLNFLSVLNLSYNNL 532
              L  L+ LNLS N L
Sbjct: 91  AEKLPNLTHLNLSGNKL 107

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 17/125 (13%)

Query: 130 QNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQF 189
           +    +REL LDN   +    E     +   NL+ L+L +  L       ++NL      
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIE--GLTAEFVNLEFLSLINVGL-----ISVSNL------ 67

Query: 190 FFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPL-LQGSLPNFPKNSYLQN 248
                L  L  L+LS+  + G       ++  L  L+LS N L    +L    K   L++
Sbjct: 68  ---PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKS 124

Query: 249 LNLAN 253
           L+L N
Sbjct: 125 LDLFN 129

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 3/85 (3%)

Query: 194 NLLNLTNLDLSQCDLR-GKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLA 252
               +  L L  C    GK      +   LE L L    L+  S+ N PK   L+ L L+
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--SVSNLPKLPKLKKLELS 79

Query: 253 NTSFSGILPDPIGILKYLTRVDLRS 277
                G L      L  LT ++L  
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSG 104

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 20/109 (18%)

Query: 315 RNLNYLDLSSN------NLNG-----VLNLGRNNLNGTLSDI--IFPRNCGLHILDLSGN 361
           +   +L LS+N      +L+G     +L+LGRN +      I  +      L  L +S N
Sbjct: 48  KACKHLALSTNNIEKISSLSGMENLRILSLGRNLI----KKIENLDAVADTLEELWISYN 103

Query: 362 QLQGVVPKSLANCNMLQVLDFRNNHISD-NFPCWLRNASSLQVLVLRSN 409
           Q+  +    +     L+VL   NN I++      L     L+ L+L  N
Sbjct: 104 QIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 29/136 (21%), Positives = 47/136 (34%), Gaps = 25/136 (18%)

Query: 72  GLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQN 131
            L+ + NL  L+L       +I    +    L  L +S  +          I + +  + 
Sbjct: 65  SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQ----------IASLSGIEK 113

Query: 132 LKELRELYLDN---VDLSGLGTERCKALSFLPNLQVLNLSS--CLLLGPINHHLANLRSH 186
           L  LR LY+ N    +   +       L+ L  L+ L L+          N+  +  R  
Sbjct: 114 LVNLRVLYMSNNKITNWGEI-----DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRI- 167

Query: 187 SQFFFVANLLNLTNLD 202
                V  L NL  LD
Sbjct: 168 ---EVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 33/177 (18%), Positives = 57/177 (32%), Gaps = 38/177 (21%)

Query: 75  NLTNLTYLNLSHCGFTG--EIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNL 132
             T    + L H       ++   +S+L     L LS+            I   +    +
Sbjct: 21  VATEAEKVEL-HGMIPPIEKMDATLSTLKACKHLALSTNN----------IEKISSLSGM 69

Query: 133 KELRELYLDN---VDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQF 189
           + LR L L       +  L        +    L+ L +S   +       L+ +      
Sbjct: 70  ENLRILSLGRNLIKKIENLD-------AVADTLEELWISYNQI-----ASLSGI------ 111

Query: 190 FFVANLLNLTNLDLSQCDLRG-KYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSY 245
                L+NL  L +S   +      +K+  +  LE L L+ NPL      N   + Y
Sbjct: 112 ---EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEY 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 15/137 (10%)

Query: 263 PIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSG-PIPSFHESRNLNYLD 321
           P  + + +T + L   +     P + +   +L  +D S+N  S     +F   R+LN L 
Sbjct: 27  PTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLV 86

Query: 322 LSSNNL----NGV---------LNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVP 368
           L  N +      +         L L  N +N  L    F     L++L L  N+LQ +  
Sbjct: 87  LYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAK 145

Query: 369 KSLANCNMLQVLDFRNN 385
            + +    +Q +    N
Sbjct: 146 GTFSPLRAIQTMHLAQN 162

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 21/132 (15%), Positives = 41/132 (31%), Gaps = 17/132 (12%)

Query: 78  NLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRE 137
            +  ++ +           +  L  +  + L     I            N  +++ E+  
Sbjct: 62  KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121

Query: 138 LYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLN 197
           +   NV   G+      AL    NL+ L LS    +              +    A   +
Sbjct: 122 ISCGNVTDKGI-----IALHHFRNLKYLFLSDLPGV-----------KEKEKIVQAFKTS 165

Query: 198 LTNLDLSQCDLR 209
           L +L+L   DL+
Sbjct: 166 LPSLELK-LDLK 176

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 43.3 bits (103), Expect = 6e-05
 Identities = 29/260 (11%), Positives = 65/260 (25%), Gaps = 65/260 (25%)

Query: 135 LRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVAN 194
           +    L++ D  G             +    + S   L                      
Sbjct: 1   MPAKTLESKDYCGE------------SFVSEDRSGQSLES------IRFED-------CT 35

Query: 195 LL--NLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLA 252
               N T  +L++C  R                +LS   +           +    +   
Sbjct: 36  FRQCNFTEAELNRCKFRE---------CEFVDCNLSLISI---------PQTSFMEVRFV 77

Query: 253 NTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQ--LFHVDFSSNHFSGPIPS 310
           +    G+           T     S    G +      L     + +  +          
Sbjct: 78  DCKMLGV---------NWTSAQWPSVKMEGALSFERCILNDSLFYGLYLAGVKMVEC--R 126

Query: 311 FHESRNLNYLDLSSNNLNGVLNLGRNNLNGT-LSDIIFPRNCGLHILDLSGNQLQGVVPK 369
            H++ N    D    +     +L  +  + T L+   F  +   + +D+  N ++     
Sbjct: 127 IHDA-NFTEADCEDADFTQS-DLKGSTFHNTKLTGASF-IDAVNYHIDIFHNDIKRAR-- 181

Query: 370 SLANCNMLQVLDFRNNHISD 389
             +      +L+  +  +SD
Sbjct: 182 -FSLPEAASLLNSLDIELSD 200

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 40/176 (22%), Positives = 62/176 (35%), Gaps = 31/176 (17%)

Query: 218 QVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGI---LKYLTRVD 274
           ++++++ +  + + +   S+        ++ L L            I     L  LT + 
Sbjct: 39  ELNSIDQIIANNSDI--KSVQGIQYLPNVRYLALGGNKLH-----DISALKELTNLTYLI 91

Query: 275 LRSCSFTGPIPTSTTNLTQLFHVDFSSNHF-SGPIPSFHESRNLNYLDLSSNNLNGVLNL 333
           L               LT L  +    N   S P   F +  NL YL+L+ N L      
Sbjct: 92  LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ----- 146

Query: 334 GRNNLNGTLSDIIFPRNCGLHILDLSGNQLQ----GVVPKSLANCNMLQVLDFRNN 385
                  +L   +F +   L  LDLS NQLQ    GV  K L     L+ L    N
Sbjct: 147 -------SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK-LTQ---LKDLRLYQN 191

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 30/117 (25%), Positives = 43/117 (36%), Gaps = 22/117 (18%)

Query: 284 IPTSTTNLTQLFHVDFSSNHFSG--PIPSFHESRNLNYLDLSSNNL----NGV------- 330
           IP  TT L        + N          F    +L  L+L  N L              
Sbjct: 27  IPLHTTEL------LLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80

Query: 331 --LNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNN 385
             L LG N +   +S+ +F     L  L+L  NQ+  V+P S  + N L  L+  +N
Sbjct: 81  QELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 43/298 (14%), Positives = 83/298 (27%), Gaps = 63/298 (21%)

Query: 135 LRELYLDNVDLSGLGTERCKALSFL-----PNLQVLNLSSCLLLGPINHHLANLRSHSQF 189
           LR+L L  V ++ +    C  ++ +       L  +NL+SC            L      
Sbjct: 74  LRQLNLAGVRMTPVK---CTVVAAVLGSGRHALDEVNLASC-----------QLDPAGLR 119

Query: 190 FFVANLLNLTNLDLSQCDLRGKYPEKILQV-----STLETLDLSYNPL-------LQGSL 237
             +   L    L L    L  +  + +  +       + TL LS NPL       L   L
Sbjct: 120 TLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179

Query: 238 PNFPKNSYLQNLNLANTSFS----GILPDPIGILKYLTRVDLRSCSFTGP-------IPT 286
                N+ + +L+L +T        +L   +   + L  +++                  
Sbjct: 180 AG---NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAR 236

Query: 287 STTNLTQLFHVDFSSNHFS--------GPIPSFHESRNLNYLDLSSNNL--NGVLNLGRN 336
              +L  L       N  S            +      +         +     + L   
Sbjct: 237 EHPSLELL---HLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEV 293

Query: 337 NL-NGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANC----NMLQVLDFRNNHISD 389
                +       R+  L + DL  ++   + P   A        ++ L  +      
Sbjct: 294 QRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGS 351

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 56/295 (18%), Positives = 84/295 (28%), Gaps = 72/295 (24%)

Query: 145 LSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLS 204
           L GL +   +A+       + NL +      I   L  L           L     LD  
Sbjct: 3   LVGLLSAHNRAVLAQLGCPIKNLDALENAQAIKKKLGKLGRQ-------VLPPSELLDHL 55

Query: 205 QCDLRGKYPEKILQV-STLETLDLSYNPL-----------LQGSLPNFPKNSYLQNLNLA 252
                 +      +V S+L  L+L+   +           L            L  +NLA
Sbjct: 56  FFHYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSG------RHALDEVNLA 109

Query: 253 NTSFSG-----ILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGP 307
           +          +LP    +     ++ L+  S     P +  +L  L   D         
Sbjct: 110 SCQLDPAGLRTLLP----VFLRARKLGLQLNSLG---PEACKDLRDLLLHDQCQ------ 156

Query: 308 IPSFHESRNLNYLDLSSNNLN--GVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQL-- 363
                    +  L LS+N L   GV  L                N  +  L L    L  
Sbjct: 157 ---------ITTLRLSNNPLTAAGVAVLME----------GLAGNTSVTHLSLLHTGLGD 197

Query: 364 QGVVP--KSLANCNMLQVLDFRNNHISDN----FPCWLRNASSLQVLVLRSNNFS 412
           +G+      L     LQ L+   N   D          R   SL++L L  N  S
Sbjct: 198 EGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 34/148 (22%), Positives = 47/148 (31%), Gaps = 14/148 (9%)

Query: 263 PIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHF-SGPIPSFHESRNLNYLD 321
           P GI      + L     T   P    +L  L  +   SN   + P+  F     L  LD
Sbjct: 35  PAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD 94

Query: 322 LSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLD 381
           L +N L              L   +F R   L  L +  N+L   +P+ +     L  L 
Sbjct: 95  LGTNQLT------------VLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLA 141

Query: 382 FRNNHISDNFPCWLRNASSLQVLVLRSN 409
              N +           SSL    L  N
Sbjct: 142 LDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	562
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.79
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.78
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.74
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.67
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.66
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.65
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.64
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.63
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.63
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.62
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.6
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.59
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.58
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.58
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.57
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.55
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.54
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.47
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.4
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.37
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.36
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.36
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.36
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.31
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.29
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.29
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.28
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.99
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.96
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.88
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.8
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.75
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.61
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.35
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.2
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.15
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.15
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.7
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.54
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.03
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.33

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4e-62  Score=533.34  Aligned_cols=513  Identities=29%  Similarity=0.440  Sum_probs=349.9

Q ss_pred             CCCCCCCCCCCCCcceeeeCCCCCeEEEECCCCCCccee---ecCCCCCcCcccccC-----------ccccCCCCCCCE
Q 048635           16 KMSQWSDSTNCCDWTGVDCDEAGHVIGLDLSAEPILIGR---LENASGLFSLQYMQS-----------QFGLANLTNLTY   81 (562)
Q Consensus        16 ~~~~w~~~~~~c~w~g~~c~~~~~v~~Ldl~~~~~~~~~---~~~~~~l~~l~~L~~-----------~~~l~~l~~L~~   81 (562)
                      .++.|..+.+||.|.||+|+ .++|++|||++. .+.+.   +  .+.+.++++|+.           +..|+++++|++
T Consensus        29 ~l~~W~~~~~~C~w~gv~C~-~~~v~~L~L~~~-~l~g~~~~l--~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~  104 (768)
T 3rgz_A           29 LLPDWSSNKNPCTFDGVTCR-DDKVTSIDLSSK-PLNVGFSAV--SSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTS  104 (768)
T ss_dssp             SSTTCCTTSCGGGSTTEEEE-TTEEEEEECTTS-CCCEEHHHH--HHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCE
T ss_pred             cccCCCCCCCCcCCcceEEC-CCcEEEEECCCC-CcCCccCcc--ChhHhccCcccccCCcCCCcCCCchhhccCCCCCE
Confidence            78999888899999999998 689999999998 77776   4  345666666665           368899999999


Q ss_pred             EecCCccCcccCCc--cCCCCCCCcEEeCCCCCCCCCCCccccCCCcccc-cCCCCCCEEEccCccCCCCCCccccccCC
Q 048635           82 LNLSHCGFTGEIPT--EISSLPRLVTLDLSSREPISGFSWRLGIPNFNFF-QNLKELRELYLDNVDLSGLGTERCKALSF  158 (562)
Q Consensus        82 L~Ls~n~i~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~~~~~~~~~l~~  158 (562)
                      |+|++|.+++.+|.  .++++++|++|++++|.+.        ...+..+ .++++|++|++++|.++...+..+..+..
T Consensus       105 L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~--------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~  176 (768)
T 3rgz_A          105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--------FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG  176 (768)
T ss_dssp             EECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEE--------CCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTC
T ss_pred             EECCCCcCCCcCCChHHHhCCCCCCEEECcCCccC--------CcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhcc
Confidence            99999999988888  8999999999999998742        3333333 67777777777777776554422222455


Q ss_pred             CCCCCEEecccCCCCCccch-hcccccC-------CCC-cccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccC
Q 048635          159 LPNLQVLNLSSCLLLGPINH-HLANLRS-------HSQ-FFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSY  229 (562)
Q Consensus       159 l~~L~~L~l~~n~~~~~~~~-~~~~l~~-------~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~  229 (562)
                      +++|++|++++|.+.+..+. .+..+..       +.+ ...++++++|++|++++|.+++..|..+..+++|++|++++
T Consensus       177 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  256 (768)
T 3rgz_A          177 CGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS  256 (768)
T ss_dssp             CTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCS
T ss_pred             CCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCC
Confidence            55566666655555443321 1111111       000 11255666677777777776666666666666666666666


Q ss_pred             CCCCC----------------------CCCCCCCC-CCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCc
Q 048635          230 NPLLQ----------------------GSLPNFPK-NSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPT  286 (562)
Q Consensus       230 ~~~~~----------------------~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  286 (562)
                      |.+..                      .....+.. +++|++|++++|.+++.+|..++.+++|++|++++|.+++.+|.
T Consensus       257 n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~  336 (768)
T 3rgz_A          257 NQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM  336 (768)
T ss_dssp             SCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCH
T ss_pred             CcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCH
Confidence            65421                      11222223 36677777777777766777777777777777777777766665


Q ss_pred             c-CCCCCCCCeeeCcCCcccccCCC-CCC---------------------------CCCCCEEEcCCCCCc---------
Q 048635          287 S-TTNLTQLFHVDFSSNHFSGPIPS-FHE---------------------------SRNLNYLDLSSNNLN---------  328 (562)
Q Consensus       287 ~-l~~l~~L~~L~l~~n~~~~~~~~-~~~---------------------------~~~L~~L~l~~n~l~---------  328 (562)
                      . +..+++|++|++++|.+.+..|. +..                           +++|++|++++|.++         
T Consensus       337 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~  416 (768)
T 3rgz_A          337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN  416 (768)
T ss_dssp             HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG
T ss_pred             HHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc
Confidence            4 66677777777777766533221 111                           234444444444332         


Q ss_pred             ----------------------------ceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEE
Q 048635          329 ----------------------------GVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVL  380 (562)
Q Consensus       329 ----------------------------~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  380 (562)
                                                  +.+++++|.+.+.+|.. +..+++|+.|++++|.+++.+|.++..+++|++|
T Consensus       417 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  495 (768)
T 3rgz_A          417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI  495 (768)
T ss_dssp             CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred             CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCceEEEecCCcccCcCCHHHhcCCCCCEE
Confidence                                        34455555555555554 5556667777777777776777777777788888


Q ss_pred             EcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhh----------
Q 048635          381 DFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLG----------  450 (562)
Q Consensus       381 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~----------  450 (562)
                      ++++|++++.+|.+++.+++|++|++++|++.+..  |..+..+++|++|++++|++.|.+|..+.....          
T Consensus       496 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~  573 (768)
T 3rgz_A          496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI--PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK  573 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEEC--CGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSC
T ss_pred             EccCCccCCcCChHHhcCCCCCEEECCCCcccCcC--CHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccc
Confidence            88888887777777888888888888888887665  778888888899999988888888876544211          


Q ss_pred             ------------------------------------------------------------hhhhh-hhCCCccccccccc
Q 048635          451 ------------------------------------------------------------MRYQA-TNKRCRDQATEEMG  469 (562)
Q Consensus       451 ------------------------------------------------------------l~~~~-~~~~~~~~~~~~l~  469 (562)
                                                                                  +.++. ..+.+.+.+|..++
T Consensus       574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~  653 (768)
T 3rgz_A          574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG  653 (768)
T ss_dssp             EEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGG
T ss_pred             cccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHh
Confidence                                                                        00111 14456677777777


Q ss_pred             CcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceecCCCCCCCC
Q 048635          470 RFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKHVL  543 (562)
Q Consensus       470 ~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~  543 (562)
                      .+++|+.|+|++|.+++.+|..|+.+++|++|||++|++++.+|..+..+++|++|++++|+++|.+|+..++.
T Consensus       654 ~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~  727 (768)
T 3rgz_A          654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE  727 (768)
T ss_dssp             GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGG
T ss_pred             ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhc
Confidence            88888888888888887788888888888888888888888888888888888888888888888888765544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=7.4e-50  Score=436.49  Aligned_cols=445  Identities=27%  Similarity=0.371  Sum_probs=324.0

Q ss_pred             CCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCccc
Q 048635           74 ANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERC  153 (562)
Q Consensus        74 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~  153 (562)
                      .++++|++|++++|.+++.+|. ++++++|++|++++|.+        ....+..+.++++|++|++++|.+....+.  
T Consensus       197 ~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l--------~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~--  265 (768)
T 3rgz_A          197 SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL--------SGDFSRAISTCTELKLLNISSNQFVGPIPP--  265 (768)
T ss_dssp             TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCC--------CSCHHHHTTTCSSCCEEECCSSCCEESCCC--
T ss_pred             ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcC--------CCcccHHHhcCCCCCEEECCCCcccCccCc--
Confidence            3445555555555555444443 55555555555555542        233444555555555555555555433221  


Q ss_pred             cccCCCCCCCEEecccCCCCCccchhcccc-cCC------------CCcccccCCCCCCEEEccCCcCcccCChh-hhCC
Q 048635          154 KALSFLPNLQVLNLSSCLLLGPINHHLANL-RSH------------SQFFFVANLLNLTNLDLSQCDLRGKYPEK-ILQV  219 (562)
Q Consensus       154 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~~------------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-l~~l  219 (562)
                         ..+++|++|++++|.+.+..|..+... +.+            ..+..++++++|++|++++|.+.+.+|.. +..+
T Consensus       266 ---~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l  342 (768)
T 3rgz_A          266 ---LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM  342 (768)
T ss_dssp             ---CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTC
T ss_pred             ---cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcC
Confidence               145555555555555554444443322 110            11344556666677777766666555544 6666


Q ss_pred             CCccEEeccCCCCCCCCCCCCCCCC-CCCEEEccCCcCCCCCCCCCcC--CCCCcEEEccCCcccccCCccCCCCCCCCe
Q 048635          220 STLETLDLSYNPLLQGSLPNFPKNS-YLQNLNLANTSFSGILPDPIGI--LKYLTRVDLRSCSFTGPIPTSTTNLTQLFH  296 (562)
Q Consensus       220 ~~L~~L~L~~~~~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  296 (562)
                      ++|++|++++|.+.......+..++ +|+.|++++|.+++.+|..+..  +++|++|++++|.+++.+|..+..+++|++
T Consensus       343 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  422 (768)
T 3rgz_A          343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS  422 (768)
T ss_dssp             TTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCE
T ss_pred             CCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCE
Confidence            6777777766654333333444444 6777777777776666666655  677888888888888788888888888999


Q ss_pred             eeCcCCcccccCC-CCCCCCCCCEEEcCCCCCc-------------ceEECCCCcCcccCCccccCCCCCcCEEECcCCc
Q 048635          297 VDFSSNHFSGPIP-SFHESRNLNYLDLSSNNLN-------------GVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQ  362 (562)
Q Consensus       297 L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~-------------~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~  362 (562)
                      |++++|.+.+..| .+..+++|++|++++|.+.             +.+++++|++.+.+|.. +..+++|+.|++++|+
T Consensus       423 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~L~~N~  501 (768)
T 3rgz_A          423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-LSNCTNLNWISLSNNR  501 (768)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSC
T ss_pred             EECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH-HhcCCCCCEEEccCCc
Confidence            9999888886554 4578888999999888776             56888889998888887 8899999999999999


Q ss_pred             ccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecC--------------------------
Q 048635          363 LQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHIS--------------------------  416 (562)
Q Consensus       363 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~--------------------------  416 (562)
                      +++.+|.++..+++|++|++++|++.+.+|..+..+++|++|++++|.+.+..+                          
T Consensus       502 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~  581 (768)
T 3rgz_A          502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND  581 (768)
T ss_dssp             CCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECC
T ss_pred             cCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccc
Confidence            999999999999999999999999999899999999999999999998874321                          


Q ss_pred             ------------------------------------------CCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhh
Q 048635          417 ------------------------------------------YPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQ  454 (562)
Q Consensus       417 ------------------------------------------~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~  454 (562)
                                                                .+..+..+++|++||+++|+++|.+|..+.....+..+
T Consensus       582 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L  661 (768)
T 3rgz_A          582 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL  661 (768)
T ss_dssp             SCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEE
T ss_pred             cccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEE
Confidence                                                      12234557889999999999999999887666666655


Q ss_pred             hh-hCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCc-c
Q 048635          455 AT-NKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNN-L  532 (562)
Q Consensus       455 ~~-~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~-l  532 (562)
                      .. ++.+.+.+|..++.+++|++|+|++|++++.+|..+..+++|++|++++|+++|.+|.. ..+..+....+.+|+ +
T Consensus       662 ~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~L  740 (768)
T 3rgz_A          662 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGL  740 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEE
T ss_pred             eCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchh
Confidence            54 77899999999999999999999999999999999999999999999999999999975 445667777788997 4


Q ss_pred             ee
Q 048635          533 VG  534 (562)
Q Consensus       533 ~~  534 (562)
                      .|
T Consensus       741 cg  742 (768)
T 3rgz_A          741 CG  742 (768)
T ss_dssp             ES
T ss_pred             cC
Confidence            54

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=6e-49  Score=420.01  Aligned_cols=438  Identities=21%  Similarity=0.219  Sum_probs=248.1

Q ss_pred             CCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCC
Q 048635           38 GHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGF  117 (562)
Q Consensus        38 ~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~  117 (562)
                      ..+++||++++ .+....              +..|.++++|++|++++|.+++..|.+|.++++|++|++++|.+    
T Consensus        33 ~~l~~L~Ls~n-~i~~~~--------------~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l----   93 (606)
T 3t6q_A           33 NSTECLEFSFN-VLPTIQ--------------NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL----   93 (606)
T ss_dssp             TTCCEEECTTC-CCSEEC--------------TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC----
T ss_pred             CcCcEEEccCC-ccCcCC--------------hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc----
Confidence            57999999999 777665              45677777777777777777766677777777777777777764    


Q ss_pred             CccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCC
Q 048635          118 SWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLN  197 (562)
Q Consensus       118 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~  197 (562)
                          ....+..|+++++|++|++++|.++.+++   ..+..+++|++|++++|.+.+.....+            ..+++
T Consensus        94 ----~~~~~~~~~~l~~L~~L~L~~n~i~~l~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~------------~~l~~  154 (606)
T 3t6q_A           94 ----IFMAETALSGPKALKHLFFIQTGISSIDF---IPLHNQKTLESLYLGSNHISSIKLPKG------------FPTEK  154 (606)
T ss_dssp             ----SEECTTTTSSCTTCCEEECTTSCCSCGGG---SCCTTCTTCCEEECCSSCCCCCCCCTT------------CCCTT
T ss_pred             ----cccChhhhcccccccEeeccccCcccCCc---chhccCCcccEEECCCCcccccCcccc------------cCCcc
Confidence                24445667777777777777777766543   345667777777777777665332211            12445


Q ss_pred             CCEEEccCCcCcccCChhhhCCCCcc--EEeccCCCCCCCCCCCCCC---------------------------------
Q 048635          198 LTNLDLSQCDLRGKYPEKILQVSTLE--TLDLSYNPLLQGSLPNFPK---------------------------------  242 (562)
Q Consensus       198 L~~L~l~~~~~~~~~~~~l~~l~~L~--~L~L~~~~~~~~~~~~~~~---------------------------------  242 (562)
                      |++|++++|.+++..+..+..+++|+  .|++++|.+.......+..                                 
T Consensus       155 L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~  234 (606)
T 3t6q_A          155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGT  234 (606)
T ss_dssp             CCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCC
T ss_pred             cCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechh
Confidence            66666666665555555555555555  5555555543322222111                                 


Q ss_pred             ----------------C--CCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcc
Q 048635          243 ----------------N--SYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHF  304 (562)
Q Consensus       243 ----------------~--~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  304 (562)
                                      +  .+++.|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+
T Consensus       235 ~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l  313 (606)
T 3t6q_A          235 FEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKF  313 (606)
T ss_dssp             CTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCC
T ss_pred             hccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCc
Confidence                            0  14555555555555555555555666666666666555 4455555566666666666655


Q ss_pred             cccCC-CCCCCCCCCEEEcCCCCCc--------------ceEECCCCcCcccC--CccccCCCCCcCEEECcCCcccccC
Q 048635          305 SGPIP-SFHESRNLNYLDLSSNNLN--------------GVLNLGRNNLNGTL--SDIIFPRNCGLHILDLSGNQLQGVV  367 (562)
Q Consensus       305 ~~~~~-~~~~~~~L~~L~l~~n~l~--------------~~l~l~~~~~~~~~--~~~~~~~~~~L~~L~L~~n~l~~~~  367 (562)
                      .+..+ .+..+++|++|++++|.+.              +.+++++|.+.+..  +.. +..+++|++|++++|.+.+..
T Consensus       314 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~  392 (606)
T 3t6q_A          314 ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ-LRNLSHLQSLNLSYNEPLSLK  392 (606)
T ss_dssp             SBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT-TTTCTTCCEEECCSCSCEEEC
T ss_pred             CcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchh-cccCCCCCEEECCCCcCCcCC
Confidence            54432 3455556666666555433              12222222222211  222 445555555555555555555


Q ss_pred             CccCCCCCCCCEEEcccCCCCCcchH-HhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhh
Q 048635          368 PKSLANCNMLQVLDFRNNHISDNFPC-WLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCS  446 (562)
Q Consensus       368 ~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  446 (562)
                      +..+..+++|++|++++|++.+..+. .+..+++|++|++++|.+.+..  +..+..+++|++|++++|++.+...    
T Consensus       393 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~----  466 (606)
T 3t6q_A          393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS--EQLFDGLPALQHLNLQGNHFPKGNI----  466 (606)
T ss_dssp             TTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTC--TTTTTTCTTCCEEECTTCBCGGGEE----
T ss_pred             HHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcC--HHHHhCCCCCCEEECCCCCCCcccc----
Confidence            55555555555555555555543322 2455555555555555554433  4445555555555555555533110    


Q ss_pred             hhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEe
Q 048635          447 TTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLN  526 (562)
Q Consensus       447 ~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  526 (562)
                                      ..+..+..+++|+.|++++|.+++..|..|..+++|++|++++|++++..|+.+..+++| +|+
T Consensus       467 ----------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~  529 (606)
T 3t6q_A          467 ----------------QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLN  529 (606)
T ss_dssp             ----------------CSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEE
T ss_pred             ----------------ccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEE
Confidence                            112345556666666666666665555566666666666666666666666666666666 666


Q ss_pred             CcCCcceecCCC
Q 048635          527 LSYNNLVGQIPT  538 (562)
Q Consensus       527 l~~n~l~~~~p~  538 (562)
                      +++|++++.+|.
T Consensus       530 L~~N~l~~~~~~  541 (606)
T 3t6q_A          530 LASNHISIILPS  541 (606)
T ss_dssp             CCSSCCCCCCGG
T ss_pred             CcCCcccccCHh
Confidence            666666655444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=7.6e-50  Score=426.60  Aligned_cols=437  Identities=19%  Similarity=0.288  Sum_probs=348.8

Q ss_pred             CCCCCCCCCCCCCc---ceeeeCCCCCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCccCc--
Q 048635           16 KMSQWSDSTNCCDW---TGVDCDEAGHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFT--   90 (562)
Q Consensus        16 ~~~~w~~~~~~c~w---~g~~c~~~~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~i~--   90 (562)
                      ..+.|+.+.+||.|   .||+|+..++|+.|+|+++ .+.+.+              |.+|+++++|++|+|++|.+.  
T Consensus        56 ~~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~-~l~g~l--------------p~~l~~L~~L~~L~Ls~N~~~~~  120 (636)
T 4eco_A           56 PGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGF-GASGRV--------------PDAIGQLTELEVLALGSHGEKVN  120 (636)
T ss_dssp             --CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTS-CCEEEE--------------CGGGGGCTTCCEEESCCGGGGGT
T ss_pred             cCCCCCCCCCcccccCCCCeEEcCCCCEEEEEecCc-ccCCcC--------------ChHHhcCccceEEECcCCccccC
Confidence            34689988899999   9999988899999999999 899998              789999999999999999762  


Q ss_pred             ----c---------------------------cCCccCC-------------------CCCCCcEEeCC--CCCCCCCCC
Q 048635           91 ----G---------------------------EIPTEIS-------------------SLPRLVTLDLS--SREPISGFS  118 (562)
Q Consensus        91 ----~---------------------------~~~~~~~-------------------~l~~L~~L~l~--~n~~~~~~~  118 (562)
                          +                           ..|..+.                   ....++.+.+.  .|.      
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~------  194 (636)
T 4eco_A          121 ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN------  194 (636)
T ss_dssp             CCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCE------
T ss_pred             CccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCC------
Confidence                1                           0111111                   11112222221  122      


Q ss_pred             ccccCCCcccccCCCCCCEEEccCccCCC------------------CCCccccccC--CCCCCCEEecccCCCCCccch
Q 048635          119 WRLGIPNFNFFQNLKELRELYLDNVDLSG------------------LGTERCKALS--FLPNLQVLNLSSCLLLGPINH  178 (562)
Q Consensus       119 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~------------------~~~~~~~~l~--~l~~L~~L~l~~n~~~~~~~~  178 (562)
                        +.. +|..++++++|++|++++|.++.                  ++    ..+.  ++++|++|++++|.+.+..|.
T Consensus       195 --l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip----~~l~~~~l~~L~~L~L~~n~l~~~~p~  267 (636)
T 4eco_A          195 --ITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT----EDLKWDNLKDLTDVEVYNCPNLTKLPT  267 (636)
T ss_dssp             --EEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT----SCCCGGGCTTCCEEEEECCTTCSSCCT
T ss_pred             --Ccc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc----hhhhhcccCCCCEEEecCCcCCccChH
Confidence              334 68889999999999999999988                  54    4677  899999999999999888765


Q ss_pred             hcccccCCCCcccccCCCCCCEEEccCCc-Ccc-cCChhhhCC------CCccEEeccCCCCCCCCCC---CCCCCCCCC
Q 048635          179 HLANLRSHSQFFFVANLLNLTNLDLSQCD-LRG-KYPEKILQV------STLETLDLSYNPLLQGSLP---NFPKNSYLQ  247 (562)
Q Consensus       179 ~~~~l~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~l~~l------~~L~~L~L~~~~~~~~~~~---~~~~~~~L~  247 (562)
                      .            ++++++|++|++++|. +++ .+|..+..+      ++|++|++++|.+.  .++   .+..+++|+
T Consensus       268 ~------------l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~  333 (636)
T 4eco_A          268 F------------LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--TFPVETSLQKMKKLG  333 (636)
T ss_dssp             T------------TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--SCCCHHHHTTCTTCC
T ss_pred             H------------HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--ccCchhhhccCCCCC
Confidence            5            4456679999999998 887 788888776      89999999999876  444   478899999


Q ss_pred             EEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCC-CCeeeCcCCcccccCCCCCCC--CCCCEEEcCC
Q 048635          248 NLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQ-LFHVDFSSNHFSGPIPSFHES--RNLNYLDLSS  324 (562)
Q Consensus       248 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~--~~L~~L~l~~  324 (562)
                      +|++++|.+++.+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|.+...+..+...  ++|++|++++
T Consensus       334 ~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~  411 (636)
T 4eco_A          334 MLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSY  411 (636)
T ss_dssp             EEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCS
T ss_pred             EEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcC
Confidence            99999999997788 8889999999999999998 78888999999 999999999998554444443  4899999988


Q ss_pred             CCCcceEECCCCcCcccCCccccC-------CCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhc
Q 048635          325 NNLNGVLNLGRNNLNGTLSDIIFP-------RNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRN  397 (562)
Q Consensus       325 n~l~~~l~l~~~~~~~~~~~~~~~-------~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~  397 (562)
                      |.+.           +.+|.. +.       .+++|+.|++++|.+++..+..+..+++|++|++++|+++...+..+..
T Consensus       412 N~l~-----------~~~p~~-l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~  479 (636)
T 4eco_A          412 NEIG-----------SVDGKN-FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD  479 (636)
T ss_dssp             SCTT-----------TTTTCS-SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEE
T ss_pred             CcCC-----------Ccchhh-hcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcc
Confidence            8776           344544 44       6678999999999999655555667899999999999998644434443


Q ss_pred             CC-------CCCEEEccCcccceecCCCCCCC--CCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccc
Q 048635          398 AS-------SLQVLVLRSNNFSGHISYPRNNV--SWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEM  468 (562)
Q Consensus       398 l~-------~L~~L~l~~n~l~~~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l  468 (562)
                      ..       +|++|++++|.+..   ++..+.  .+++|++|++++|+++                       + +|..+
T Consensus       480 ~~~~~~~l~~L~~L~Ls~N~l~~---lp~~~~~~~l~~L~~L~Ls~N~l~-----------------------~-ip~~~  532 (636)
T 4eco_A          480 ENENFKNTYLLTSIDLRFNKLTK---LSDDFRATTLPYLVGIDLSYNSFS-----------------------K-FPTQP  532 (636)
T ss_dssp             TTEECTTGGGCCEEECCSSCCCB---CCGGGSTTTCTTCCEEECCSSCCS-----------------------S-CCCGG
T ss_pred             ccccccccCCccEEECcCCcCCc---cChhhhhccCCCcCEEECCCCCCC-----------------------C-cChhh
Confidence            33       89999999999983   366666  8999999999999983                       3 66778


Q ss_pred             cCcCCCCEEeC------cCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceecCCC
Q 048635          469 GRFKSLYALNM------SHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPT  538 (562)
Q Consensus       469 ~~l~~L~~L~L------s~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~  538 (562)
                      ..+++|+.|++      ++|.+.+.+|..+..+++|++|+|++|+++ .+|..+.  ++|++|++++|++....+.
T Consensus       533 ~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~~  605 (636)
T 4eco_A          533 LNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDLS  605 (636)
T ss_dssp             GGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEECT
T ss_pred             hcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccccHH
Confidence            88999999999      567788899999999999999999999995 7887765  8999999999998755443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=8.8e-48  Score=416.48  Aligned_cols=487  Identities=22%  Similarity=0.176  Sum_probs=294.8

Q ss_pred             CCeEEEECCCCCCcceeec-CCCCCcCcccccC---------ccccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEe
Q 048635           38 GHVIGLDLSAEPILIGRLE-NASGLFSLQYMQS---------QFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLD  107 (562)
Q Consensus        38 ~~v~~Ldl~~~~~~~~~~~-~~~~l~~l~~L~~---------~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  107 (562)
                      .++++||++++ .+.+... .+..+.++++|..         +..|+++++|++|++++|.+++..+.+|+++++|++|+
T Consensus        25 ~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           25 TNITVLNLTHN-QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             TTCSEEECCSS-CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEECCCC-CCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence            57888888888 5554431 2333334444333         44566777788888888777754445677788888888


Q ss_pred             CCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccc----
Q 048635          108 LSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANL----  183 (562)
Q Consensus       108 l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l----  183 (562)
                      +++|.+        ....+..|+++++|++|++++|.++..++   ..+..+++|++|++++|.+++..+..+..+    
T Consensus       104 L~~n~l--------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  172 (680)
T 1ziw_A          104 LMSNSI--------QKIKNNPFVKQKNLITLDLSHNGLSSTKL---GTQVQLENLQELLLSNNKIQALKSEELDIFANSS  172 (680)
T ss_dssp             CCSSCC--------CCCCSCTTTTCTTCCEEECCSSCCSCCCC---CSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCE
T ss_pred             CCCCcc--------CccChhHccccCCCCEEECCCCcccccCc---hhhcccccCCEEEccCCcccccCHHHhhcccccc
Confidence            877764        23444567777777777777777766554   345667777777777777666555433211    


Q ss_pred             -cC-------CCC--ccccc---------------------------CCCCCCEEEccCCcCcccCChhhhCCCC--ccE
Q 048635          184 -RS-------HSQ--FFFVA---------------------------NLLNLTNLDLSQCDLRGKYPEKILQVST--LET  224 (562)
Q Consensus       184 -~~-------~~~--~~~l~---------------------------~l~~L~~L~l~~~~~~~~~~~~l~~l~~--L~~  224 (562)
                       ..       +.+  +..+.                           ..++|++|++++|.+.+..+..+..++.  |+.
T Consensus       173 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~  252 (680)
T 1ziw_A          173 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM  252 (680)
T ss_dssp             ESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCE
T ss_pred             ccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCE
Confidence             11       000  11111                           1256777778888777777777776644  888


Q ss_pred             EeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccc-----cCC----ccCCCCCCCC
Q 048635          225 LDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTG-----PIP----TSTTNLTQLF  295 (562)
Q Consensus       225 L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-----~~~----~~l~~l~~L~  295 (562)
                      |++++|.+.......+..+++|++|++++|.+++..|..+..+++|++|++++|...+     .+|    ..+..+++|+
T Consensus       253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~  332 (680)
T 1ziw_A          253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE  332 (680)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCC
T ss_pred             EECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCC
Confidence            8888887766555667778888888888888887777778888888888887764432     122    2566778888


Q ss_pred             eeeCcCCcccccCCC-CCCCCCCCEEEcCCCCCc-----------------ceEECCCCcCcccCCccccCCCCCcCEEE
Q 048635          296 HVDFSSNHFSGPIPS-FHESRNLNYLDLSSNNLN-----------------GVLNLGRNNLNGTLSDIIFPRNCGLHILD  357 (562)
Q Consensus       296 ~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~l~-----------------~~l~l~~~~~~~~~~~~~~~~~~~L~~L~  357 (562)
                      +|++++|.+.+..+. +..+++|++|++++|.+.                 +.+++++|++.+..|.. +..+++|+.|+
T Consensus       333 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~  411 (680)
T 1ziw_A          333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA-FSWLGHLEVLD  411 (680)
T ss_dssp             EEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTT-TTTCTTCCEEE
T ss_pred             EEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhh-hhCCCCCCEEe
Confidence            888888888775543 577888888888877521                 35666777776544443 66777777777


Q ss_pred             CcCCcccccCC-ccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCc
Q 048635          358 LSGNQLQGVVP-KSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNK  436 (562)
Q Consensus       358 L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~  436 (562)
                      +++|.+.+.++ ..+..+++|++|++++|++.+..+..|..+++|++|++++|.+......+..+..+++|++|++++|+
T Consensus       412 L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~  491 (680)
T 1ziw_A          412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN  491 (680)
T ss_dssp             CCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC
T ss_pred             CCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCC
Confidence            77777765443 56666777777777777666555555556666666666666555333335555566666666666666


Q ss_pred             CCCcCChhhhhhhhhhhhhh-hCCCccc--------ccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCc
Q 048635          437 FGGRLSQKCSTTLGMRYQAT-NKRCRDQ--------ATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNN  507 (562)
Q Consensus       437 ~~~~~~~~~~~~~~l~~~~~-~~~~~~~--------~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~  507 (562)
                      +++..+..+.....++.+.. .+.+.+.        .+..+..+++|++|++++|.++...+..|..+++|++|++++|+
T Consensus       492 l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~  571 (680)
T 1ziw_A          492 IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN  571 (680)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCC
Confidence            55433322222222222222 1112111        11124455555555555555553333345555555555555555


Q ss_pred             ccccChhhhcCCCCCCeEeCcCCcceecCC
Q 048635          508 LSGKIPAQLASLNFLSVLNLSYNNLVGQIP  537 (562)
Q Consensus       508 l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p  537 (562)
                      +++..+..+..+++|++|++++|++++..|
T Consensus       572 l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~  601 (680)
T 1ziw_A          572 LNTLPASVFNNQVSLKSLNLQKNLITSVEK  601 (680)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCBCCH
T ss_pred             CCcCCHhHhCCCCCCCEEECCCCcCCccCh
Confidence            554444444555555555555555554433

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=6.2e-47  Score=404.41  Aligned_cols=436  Identities=23%  Similarity=0.237  Sum_probs=297.3

Q ss_pred             CCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCC
Q 048635           38 GHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGF  117 (562)
Q Consensus        38 ~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~  117 (562)
                      .++++||++++ .+....              +..|.++++|++|++++|.+++..|.+|+++++|++|++++|.+.   
T Consensus        57 ~~L~~L~Ls~n-~i~~~~--------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~---  118 (606)
T 3t6q_A           57 INLTFLDLTRC-QIYWIH--------------EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS---  118 (606)
T ss_dssp             TTCSEEECTTC-CCCEEC--------------TTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCS---
T ss_pred             ccceEEECCCC-ccceeC--------------hhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcc---
Confidence            67999999999 666655              556777777888888887777777777777788888888777642   


Q ss_pred             CccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCC
Q 048635          118 SWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLN  197 (562)
Q Consensus       118 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~  197 (562)
                           ...+..++++++|++|++++|.++.++.   ..+..+++|++|++++|.+.+..+..++.+..            
T Consensus       119 -----~l~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~------------  178 (606)
T 3t6q_A          119 -----SIDFIPLHNQKTLESLYLGSNHISSIKL---PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ------------  178 (606)
T ss_dssp             -----CGGGSCCTTCTTCCEEECCSSCCCCCCC---CTTCCCTTCCEEECCSSCCCEECHHHHHTTTT------------
T ss_pred             -----cCCcchhccCCcccEEECCCCcccccCc---ccccCCcccCEEEcccCcccccChhhhhhhcc------------
Confidence                 3334557777777777777777776543   23334777777777777776665554443332            


Q ss_pred             CC--EEEccCCcCcccCChhhhC-------------------------------------------------C--CCccE
Q 048635          198 LT--NLDLSQCDLRGKYPEKILQ-------------------------------------------------V--STLET  224 (562)
Q Consensus       198 L~--~L~l~~~~~~~~~~~~l~~-------------------------------------------------l--~~L~~  224 (562)
                      |+  +|++++|.+++..+..+..                                                 +  .+|+.
T Consensus       179 L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~  258 (606)
T 3t6q_A          179 ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES  258 (606)
T ss_dssp             CCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEE
T ss_pred             cceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeE
Confidence            33  3333333333222221110                                                 0  03444


Q ss_pred             EeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcc
Q 048635          225 LDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHF  304 (562)
Q Consensus       225 L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  304 (562)
                      |++++|.+.......+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus       259 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  337 (606)
T 3t6q_A          259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK  337 (606)
T ss_dssp             EECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred             EEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCc
Confidence            444444443333333444445555555555444 3344444445555555555554444444444445555555555444


Q ss_pred             cccCC--CCCCCCCCCEEEcCCCCCc---------------ceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccC
Q 048635          305 SGPIP--SFHESRNLNYLDLSSNNLN---------------GVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVV  367 (562)
Q Consensus       305 ~~~~~--~~~~~~~L~~L~l~~n~l~---------------~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  367 (562)
                      .+..+  .+..+++|++|++++|.++               +.+++++|.+.+..|.. +..+++|+.|++++|.+.+..
T Consensus       338 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~  416 (606)
T 3t6q_A          338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA-FKECPQLELLDLAFTRLKVKD  416 (606)
T ss_dssp             CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTT-TTTCTTCSEEECTTCCEECCT
T ss_pred             ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHH-hcCCccCCeEECCCCcCCCcc
Confidence            43222  1344444555555444433               23444444444444444 889999999999999998765


Q ss_pred             Cc-cCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCccccee-cCCCCCCCCCCCCCEEEcCCCcCCCcCChhh
Q 048635          368 PK-SLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGH-ISYPRNNVSWPLLQIVDFASNKFGGRLSQKC  445 (562)
Q Consensus       368 ~~-~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  445 (562)
                      +. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. ...+..+..+++|++|++++|+++       
T Consensus       417 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-------  489 (606)
T 3t6q_A          417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS-------  489 (606)
T ss_dssp             TCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCC-------
T ss_pred             cchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccC-------
Confidence            54 488999999999999999998888999999999999999999763 222466889999999999999984       


Q ss_pred             hhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeE
Q 048635          446 STTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVL  525 (562)
Q Consensus       446 ~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  525 (562)
                                      +..|..+..+++|++|++++|++++..|+.+.+++.| .|++++|++++..|..+..+++|++|
T Consensus       490 ----------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L  552 (606)
T 3t6q_A          490 ----------------SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTI  552 (606)
T ss_dssp             ----------------EECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEE
T ss_pred             ----------------ccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEE
Confidence                            4556778899999999999999999999999999999 99999999999999999999999999


Q ss_pred             eCcCCcceecCC
Q 048635          526 NLSYNNLVGQIP  537 (562)
Q Consensus       526 ~l~~n~l~~~~p  537 (562)
                      ++++|++.+..+
T Consensus       553 ~l~~N~~~c~c~  564 (606)
T 3t6q_A          553 NLRQNPLDCTCS  564 (606)
T ss_dssp             ECTTCCEECSGG
T ss_pred             eCCCCCccccCC
Confidence            999999997655

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=6.1e-48  Score=418.19  Aligned_cols=425  Identities=20%  Similarity=0.255  Sum_probs=305.3

Q ss_pred             ceeeeCCCCCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEec-CCccCcccCCccC-----------
Q 048635           30 TGVDCDEAGHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNL-SHCGFTGEIPTEI-----------   97 (562)
Q Consensus        30 ~g~~c~~~~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~L-s~n~i~~~~~~~~-----------   97 (562)
                      .||.|+..++|+.|+|+++ .+.+.+              |.+|+++++|++|+| ++|.+++..|...           
T Consensus       315 ~GV~C~~~~~V~~L~Ls~~-~L~G~i--------------p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~  379 (876)
T 4ecn_A          315 PGVDLDNNGRVTGLSLAGF-GAKGRV--------------PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEER  379 (876)
T ss_dssp             TTEEECTTSCEEEEECTTT-CCEEEE--------------CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHH
T ss_pred             CceEecCCCCEEEEECccC-CCCCcC--------------chHHhccccceEeeecccccccccccccccccccccchhH
Confidence            9999998899999999999 999998              889999999999999 8887766522110           


Q ss_pred             ----------------------------------------CCCCCCcEEeCCC--CCCCCCCCccccCCCcccccCCCCC
Q 048635           98 ----------------------------------------SSLPRLVTLDLSS--REPISGFSWRLGIPNFNFFQNLKEL  135 (562)
Q Consensus        98 ----------------------------------------~~l~~L~~L~l~~--n~~~~~~~~~~~~~~~~~~~~l~~L  135 (562)
                                                              .....++.+.+..  |.        +.. +|..|+++++|
T Consensus       380 l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~--------L~~-IP~~l~~L~~L  450 (876)
T 4ecn_A          380 KHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR--------ITF-ISKAIQRLTKL  450 (876)
T ss_dssp             HHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCE--------EEE-ECGGGGGCTTC
T ss_pred             HHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCc--------ccc-hhHHHhcCCCC
Confidence                                                    0111222222221  22        223 57778888888


Q ss_pred             CEEEccCccCCC------------------CCCccccccC--CCCCCCEEecccCCCCCccchhcccccCCCCcccccCC
Q 048635          136 RELYLDNVDLSG------------------LGTERCKALS--FLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANL  195 (562)
Q Consensus       136 ~~L~l~~~~l~~------------------~~~~~~~~l~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l  195 (562)
                      ++|++++|.++.                  +|    ..+.  .+++|++|++++|.+.+..|..+            .++
T Consensus       451 ~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP----~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l------------~~L  514 (876)
T 4ecn_A          451 QIIYFANSPFTYDNIAVDWEDANSDYAKQYEN----EELSWSNLKDLTDVELYNCPNMTQLPDFL------------YDL  514 (876)
T ss_dssp             CEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT----SCCCGGGCTTCCEEEEESCTTCCSCCGGG------------GGC
T ss_pred             CEEECcCCcCCCCcccccccccccccccccCC----hhhhhccCCCCCEEECcCCCCCccChHHH------------hCC
Confidence            888888888877                  44    3555  78888888888888777766544            445


Q ss_pred             CCCCEEEccCCc-Ccc-cCChhhhCCC-------CccEEeccCCCCCCCCCCC---CCCCCCCCEEEccCCcCCCCCCCC
Q 048635          196 LNLTNLDLSQCD-LRG-KYPEKILQVS-------TLETLDLSYNPLLQGSLPN---FPKNSYLQNLNLANTSFSGILPDP  263 (562)
Q Consensus       196 ~~L~~L~l~~~~-~~~-~~~~~l~~l~-------~L~~L~L~~~~~~~~~~~~---~~~~~~L~~L~L~~n~l~~~~~~~  263 (562)
                      ++|++|++++|. +++ .+|..+..++       +|+.|++++|.+.  .++.   +..+++|+.|++++|.++ .+| .
T Consensus       515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~  590 (876)
T 4ecn_A          515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHNKVR-HLE-A  590 (876)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C
T ss_pred             CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCCCcc-cch-h
Confidence            568888888887 776 6676555444       8888888888765  3443   677888888888888887 566 7


Q ss_pred             CcCCCCCcEEEccCCcccccCCccCCCCCC-CCeeeCcCCcccccCCCCCCCC--CCCEEEcCCCCCcceEECCCCcCcc
Q 048635          264 IGILKYLTRVDLRSCSFTGPIPTSTTNLTQ-LFHVDFSSNHFSGPIPSFHESR--NLNYLDLSSNNLNGVLNLGRNNLNG  340 (562)
Q Consensus       264 ~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~~--~L~~L~l~~n~l~~~l~l~~~~~~~  340 (562)
                      +..+++|+.|++++|.++ .+|..+..+++ |+.|++++|.+...+..+...+  +|+.|++++|.+.           +
T Consensus       591 ~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~-----------g  658 (876)
T 4ecn_A          591 FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIG-----------S  658 (876)
T ss_dssp             CCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTT-----------T
T ss_pred             hcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCC-----------C
Confidence            788888888888888887 67777888887 8888888888874443444433  4888888877765           2


Q ss_pred             cCCccc--cC--CCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhc-------CCCCCEEEccCc
Q 048635          341 TLSDII--FP--RNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRN-------ASSLQVLVLRSN  409 (562)
Q Consensus       341 ~~~~~~--~~--~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~-------l~~L~~L~l~~n  409 (562)
                      .+|...  +.  ..++|+.|++++|.++...+..+..+++|+.|+|++|++....+..+..       +++|++|++++|
T Consensus       659 ~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N  738 (876)
T 4ecn_A          659 EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN  738 (876)
T ss_dssp             TSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS
T ss_pred             ccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCC
Confidence            222210  11  3347888888888888433333457788888888888887533333322       238888888888


Q ss_pred             ccceecCCCCCCC--CCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcC------
Q 048635          410 NFSGHISYPRNNV--SWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSH------  481 (562)
Q Consensus       410 ~l~~~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~------  481 (562)
                      ++.   .++..+.  .+++|+.|++++|++.                       + +|..+..+++|+.|+|++      
T Consensus       739 ~L~---~lp~~l~~~~l~~L~~L~Ls~N~L~-----------------------~-lp~~l~~L~~L~~L~Ls~N~~ls~  791 (876)
T 4ecn_A          739 KLT---SLSDDFRATTLPYLSNMDVSYNCFS-----------------------S-FPTQPLNSSQLKAFGIRHQRDAEG  791 (876)
T ss_dssp             CCC---CCCGGGSTTTCTTCCEEECCSSCCS-----------------------S-CCCGGGGCTTCCEEECCCCBCTTC
T ss_pred             CCc---cchHHhhhccCCCcCEEEeCCCCCC-----------------------c-cchhhhcCCCCCEEECCCCCCccc
Confidence            887   3356665  7888888888888873                       2 566677888888888876      


Q ss_pred             CcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceecCCCCC
Q 048635          482 NALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAK  540 (562)
Q Consensus       482 n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~  540 (562)
                      |.+.+.+|..|..+++|+.|+|++|++ +.+|..+.  ++|+.|+|++|++....+..+
T Consensus       792 N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~  847 (876)
T 4ecn_A          792 NRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSV  847 (876)
T ss_dssp             CBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGG
T ss_pred             ccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHc
Confidence            777778888899999999999999999 47787655  689999999998876555443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.2e-47  Score=407.83  Aligned_cols=440  Identities=22%  Similarity=0.209  Sum_probs=230.1

Q ss_pred             CCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCC
Q 048635           38 GHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGF  117 (562)
Q Consensus        38 ~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~  117 (562)
                      .++++||++++ .+.+..              +..|.++++|++|++++|.+++..|.+|.++++|++|++++|.+    
T Consensus        32 ~~l~~L~Ls~n-~l~~~~--------------~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l----   92 (606)
T 3vq2_A           32 SSTKNIDLSFN-PLKILK--------------SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI----   92 (606)
T ss_dssp             TTCCEEECTTS-CCCEEC--------------TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC----
T ss_pred             CCcCEEECCCC-CcCEeC--------------hhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc----
Confidence            67999999999 776665              34566666666666666666666666666666666666666663    


Q ss_pred             CccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCC-ccchhcccccCCCCcccccCCC
Q 048635          118 SWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLG-PINHHLANLRSHSQFFFVANLL  196 (562)
Q Consensus       118 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~~~~~~~l~~l~  196 (562)
                          ....|..|+++++|++|++++|.++.+++   ..+..+++|++|++++|.+.+ ..|..            +++++
T Consensus        93 ----~~~~p~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~lp~~------------~~~l~  153 (606)
T 3vq2_A           93 ----QSFSPGSFSGLTSLENLVAVETKLASLES---FPIGQLITLKKLNVAHNFIHSCKLPAY------------FSNLT  153 (606)
T ss_dssp             ----CCCCTTSSTTCTTCCEEECTTSCCCCSSS---SCCTTCTTCCEEECCSSCCCCCCCCGG------------GGTCT
T ss_pred             ----cccChhhcCCcccCCEEEccCCccccccc---cccCCCCCCCEEeCCCCcccceechHh------------HhhcC
Confidence                23445666666666666666666666554   245666666666666666654 22333            33344


Q ss_pred             CCCEEEccCCcCcccCChhhhCCCCc----cEEeccCCCCCCCCCCCC--------------------------------
Q 048635          197 NLTNLDLSQCDLRGKYPEKILQVSTL----ETLDLSYNPLLQGSLPNF--------------------------------  240 (562)
Q Consensus       197 ~L~~L~l~~~~~~~~~~~~l~~l~~L----~~L~L~~~~~~~~~~~~~--------------------------------  240 (562)
                      +|++|++++|.+++..+..+..+.+|    ..|++++|.+.......+                                
T Consensus       154 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~  233 (606)
T 3vq2_A          154 NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHV  233 (606)
T ss_dssp             TCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEE
T ss_pred             CCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcccccccc
Confidence            55555555555554444444333322    244554444332222222                                


Q ss_pred             ------------------------------------------------CCCCCCCEEEccCCcCCCCCCCCCcCCCCCcE
Q 048635          241 ------------------------------------------------PKNSYLQNLNLANTSFSGILPDPIGILKYLTR  272 (562)
Q Consensus       241 ------------------------------------------------~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~  272 (562)
                                                                      ..+++|+.|++++|.+.. +| .+..+++|++
T Consensus       234 l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~  311 (606)
T 3vq2_A          234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQS  311 (606)
T ss_dssp             EEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSE
T ss_pred             ccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchh-hh-hccccccCCE
Confidence                                                            223444444444444432 22 3444445555


Q ss_pred             EEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCccc--CCccccCCC
Q 048635          273 VDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGT--LSDIIFPRN  350 (562)
Q Consensus       273 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~--~~~~~~~~~  350 (562)
                      |++++|.+ +.+| .+ .+++|++|++++|...+.. .+..+++|++|++++|.++           +.  ++.. +..+
T Consensus       312 L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~-----------~~~~~~~~-~~~~  375 (606)
T 3vq2_A          312 LSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALS-----------FSGCCSYS-DLGT  375 (606)
T ss_dssp             EEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEE-----------EEEECCHH-HHCC
T ss_pred             EEcccccC-cccc-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccC-----------CCcchhhh-hccC
Confidence            55555555 2333 22 4455555555555333222 3334455555555555443           22  1222 4455


Q ss_pred             CCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcch-HHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCE
Q 048635          351 CGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFP-CWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQI  429 (562)
Q Consensus       351 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~  429 (562)
                      ++|+.|++++|.+++ +|..+..+++|++|++++|++.+..+ ..+..+++|++|++++|.+.+..  +..+..+++|++
T Consensus       376 ~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~  452 (606)
T 3vq2_A          376 NSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF--DGIFLGLTSLNT  452 (606)
T ss_dssp             SCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECC--TTTTTTCTTCCE
T ss_pred             CcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccc--hhhhcCCCCCCE
Confidence            556666666655553 33555555666666666665555444 34555566666666666555433  455555566666


Q ss_pred             EEcCCCcCCCc-CChhhhhhhhhhhhhh-hCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCc
Q 048635          430 VDFASNKFGGR-LSQKCSTTLGMRYQAT-NKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNN  507 (562)
Q Consensus       430 L~l~~n~~~~~-~~~~~~~~~~l~~~~~-~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~  507 (562)
                      |++++|++.+. .|..+.....++.+.. .+.+.+..|..+..+++|++|++++|++++..|..|..+++|++|++++|+
T Consensus       453 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~  532 (606)
T 3vq2_A          453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR  532 (606)
T ss_dssp             EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred             EECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence            66666655332 1111111111111111 112233444455555666666666666665555556666666666666666


Q ss_pred             ccccChhhhcCCC-CCCeEeCcCCcceecCC
Q 048635          508 LSGKIPAQLASLN-FLSVLNLSYNNLVGQIP  537 (562)
Q Consensus       508 l~~~~p~~l~~l~-~L~~L~l~~n~l~~~~p  537 (562)
                      ++ .+|..+..++ +|++|++++|++.+..+
T Consensus       533 l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          533 IE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             CC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             Cc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            65 4444455554 36666666666554443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1e-45  Score=400.20  Aligned_cols=497  Identities=21%  Similarity=0.191  Sum_probs=375.6

Q ss_pred             CCeEEEECCCCCCcceee-cCCCCCcCcccccC--------c-cccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEe
Q 048635           38 GHVIGLDLSAEPILIGRL-ENASGLFSLQYMQS--------Q-FGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLD  107 (562)
Q Consensus        38 ~~v~~Ldl~~~~~~~~~~-~~~~~l~~l~~L~~--------~-~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  107 (562)
                      .++++||++++ .+.+.. +.+..+.+|++|..        + ..|+++++|++|++++|.+++..|.+|+++++|++|+
T Consensus        49 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  127 (680)
T 1ziw_A           49 SQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD  127 (680)
T ss_dssp             TTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEE
T ss_pred             CcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEE
Confidence            57899999988 655543 11223344444443        3 3689999999999999999977778899999999999


Q ss_pred             CCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCC-
Q 048635          108 LSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSH-  186 (562)
Q Consensus       108 l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~-  186 (562)
                      +++|.+.        ...+..+.++++|++|++++|.++..++..+ ....+++|++|++++|.+.+..+..+..+..+ 
T Consensus       128 Ls~n~l~--------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  198 (680)
T 1ziw_A          128 LSHNGLS--------STKLGTQVQLENLQELLLSNNKIQALKSEEL-DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLF  198 (680)
T ss_dssp             CCSSCCS--------CCCCCSSSCCTTCCEEECCSSCCCCBCHHHH-GGGTTCEESEEECTTCCCCCBCTTGGGGSSEEC
T ss_pred             CCCCccc--------ccCchhhcccccCCEEEccCCcccccCHHHh-hccccccccEEECCCCcccccChhhhhhhhhhh
Confidence            9999853        5566778899999999999999887765321 12356889999999998888777655443221 


Q ss_pred             ------------------------------------C--CcccccCCC--CCCEEEccCCcCcccCChhhhCCCCccEEe
Q 048635          187 ------------------------------------S--QFFFVANLL--NLTNLDLSQCDLRGKYPEKILQVSTLETLD  226 (562)
Q Consensus       187 ------------------------------------~--~~~~l~~l~--~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  226 (562)
                                                          .  .+.++..++  +|++|++++|.+++..+..+..+++|+.|+
T Consensus       199 ~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  278 (680)
T 1ziw_A          199 GLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF  278 (680)
T ss_dssp             EEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             hhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEee
Confidence                                                0  133455554  499999999999988888899999999999


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCEEEccCCcCCC-----CCC----CCCcCCCCCcEEEccCCcccccCCccCCCCCCCCee
Q 048635          227 LSYNPLLQGSLPNFPKNSYLQNLNLANTSFSG-----ILP----DPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHV  297 (562)
Q Consensus       227 L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-----~~~----~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  297 (562)
                      +++|.+.......+..+++|+.|++++|...+     .+|    ..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus       279 L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  358 (680)
T 1ziw_A          279 LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYL  358 (680)
T ss_dssp             CCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEE
T ss_pred             CCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEE
Confidence            99998766666678888889999988765432     122    267778889999999998887777778888888888


Q ss_pred             eCcCCcccccC-C--CCC--CCCCCCEEEcCCCCCc-------------ceEECCCCcCcccCCccccCCCCCcCEEECc
Q 048635          298 DFSSNHFSGPI-P--SFH--ESRNLNYLDLSSNNLN-------------GVLNLGRNNLNGTLSDIIFPRNCGLHILDLS  359 (562)
Q Consensus       298 ~l~~n~~~~~~-~--~~~--~~~~L~~L~l~~n~l~-------------~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~  359 (562)
                      ++++|.+.... +  .+.  ..++|+.|++++|.++             +.+++++|.+.+.+|...+.++++|+.|+++
T Consensus       359 ~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls  438 (680)
T 1ziw_A          359 SLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS  438 (680)
T ss_dssp             ECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECC
T ss_pred             ECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecC
Confidence            88888754311 1  121  2257888888887765             4677888888778887678899999999999


Q ss_pred             CCcccccCCccCCCCCCCCEEEcccCCCC--CcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcC
Q 048635          360 GNQLQGVVPKSLANCNMLQVLDFRNNHIS--DNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKF  437 (562)
Q Consensus       360 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~  437 (562)
                      +|++.+..+..+..+++|++|++++|.+.  +..|..+..+++|++|++++|.+.+..  +..+..+++|++|++++|++
T Consensus       439 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~--~~~~~~l~~L~~L~Ls~N~l  516 (680)
T 1ziw_A          439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN--DDMLEGLEKLEILDLQHNNL  516 (680)
T ss_dssp             SCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCC
T ss_pred             CCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCC--hhhhccccccCEEeCCCCCc
Confidence            99988888888888899999999998876  456777888889999999999888655  66678888999999999988


Q ss_pred             CCcCChh-------hhhhh-hhhhhhh-hCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcc
Q 048635          438 GGRLSQK-------CSTTL-GMRYQAT-NKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNL  508 (562)
Q Consensus       438 ~~~~~~~-------~~~~~-~l~~~~~-~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l  508 (562)
                      ++..+..       .+..+ .+..+.. .+.+....+..+..+++|+.|++++|.+++..+..|..+++|+.|++++|++
T Consensus       517 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l  596 (680)
T 1ziw_A          517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI  596 (680)
T ss_dssp             GGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             cccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcC
Confidence            6542221       11111 3333333 3444533344689999999999999999977777789999999999999999


Q ss_pred             cccChhhhc-CCCCCCeEeCcCCcceecCCCCCCCCccc
Q 048635          509 SGKIPAQLA-SLNFLSVLNLSYNNLVGQIPTAKHVLPNF  546 (562)
Q Consensus       509 ~~~~p~~l~-~l~~L~~L~l~~n~l~~~~p~~~~~~~~l  546 (562)
                      ++..|..+. .+++|++|++++|++.+..+....+..++
T Consensus       597 ~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~  635 (680)
T 1ziw_A          597 TSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWI  635 (680)
T ss_dssp             CBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCS
T ss_pred             CccChhHhcccccccCEEEccCCCcccCCccHHHHHHHH
Confidence            988888887 78999999999999988776433333333

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4.1e-46  Score=411.07  Aligned_cols=481  Identities=21%  Similarity=0.215  Sum_probs=281.3

Q ss_pred             CCcceeeeCCCCCeEEEECCCCCCcceee-cCCCCCcCcccccC----------ccccCCCCCCCEEecCCccCcccCCc
Q 048635           27 CDWTGVDCDEAGHVIGLDLSAEPILIGRL-ENASGLFSLQYMQS----------QFGLANLTNLTYLNLSHCGFTGEIPT   95 (562)
Q Consensus        27 c~w~g~~c~~~~~v~~Ldl~~~~~~~~~~-~~~~~l~~l~~L~~----------~~~l~~l~~L~~L~Ls~n~i~~~~~~   95 (562)
                      |.|..+.+ ...++++|||++| .+.... ..+..+.+|++|..          +..|.++++|++|+|++|.+++..|.
T Consensus        14 ~~L~~vP~-lp~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~   91 (844)
T 3j0a_A           14 CNLTQVPQ-VLNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD   91 (844)
T ss_dssp             CCSSCCCS-SCTTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred             CCCCCCCC-CCCCcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence            56777777 5588999999999 666654 22333333333332          34466666666666666666656666


Q ss_pred             cCCCCCCCcEEeCCCCCCCCCCCccccCCCcc--cccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCC
Q 048635           96 EISSLPRLVTLDLSSREPISGFSWRLGIPNFN--FFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLL  173 (562)
Q Consensus        96 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~  173 (562)
                      +|.++++|++|++++|.+.        ...+.  .|.++++|++|++++|.+++..+.  ..+.++++|++|++++|.+.
T Consensus        92 ~~~~l~~L~~L~Ls~n~l~--------~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~--~~~~~L~~L~~L~Ls~N~i~  161 (844)
T 3j0a_A           92 AFQGLFHLFELRLYFCGLS--------DAVLKDGYFRNLKALTRLDLSKNQIRSLYLH--PSFGKLNSLKSIDFSSNQIF  161 (844)
T ss_dssp             SSCSCSSCCCEECTTCCCS--------SCCSTTCCCSSCSSCCEEEEESCCCCCCCCC--GGGGTCSSCCEEEEESSCCC
T ss_pred             HccCCcccCEeeCcCCCCC--------cccccCccccccCCCCEEECCCCcccccccc--hhHhhCCCCCEEECCCCcCC
Confidence            6666666666666666532        21222  356666666666666666554321  34556666666666666666


Q ss_pred             CccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCC------ccEEeccCCCCCCCCCCCC-------
Q 048635          174 GPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVST------LETLDLSYNPLLQGSLPNF-------  240 (562)
Q Consensus       174 ~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~------L~~L~L~~~~~~~~~~~~~-------  240 (562)
                      +..+..+..+.          .++|+.|++++|.+.+..+..+..+++      |+.|++++|.+.......+       
T Consensus       162 ~~~~~~l~~l~----------~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~  231 (844)
T 3j0a_A          162 LVCEHELEPLQ----------GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKS  231 (844)
T ss_dssp             CCCSGGGHHHH----------HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSC
T ss_pred             eeCHHHccccc----------CCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcc
Confidence            55544443321          045666666666666555555444443      6777776664322111111       


Q ss_pred             -----------------------------CC--CCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCC
Q 048635          241 -----------------------------PK--NSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTT  289 (562)
Q Consensus       241 -----------------------------~~--~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~  289 (562)
                                                   ..  .++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+.
T Consensus       232 ~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~  311 (844)
T 3j0a_A          232 QAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY  311 (844)
T ss_dssp             CBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTT
T ss_pred             cccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhc
Confidence                                         11  14566666666666555555566666666666666666655555566


Q ss_pred             CCCCCCeeeCcCCcccccCC-CCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCC
Q 048635          290 NLTQLFHVDFSSNHFSGPIP-SFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVP  368 (562)
Q Consensus       290 ~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  368 (562)
                      .+++|++|++++|.+.+..+ .+..+++|++|++++|.+.            .++...|..+++|+.|++++|.+++.  
T Consensus       312 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~------------~~~~~~~~~l~~L~~L~Ls~N~l~~i--  377 (844)
T 3j0a_A          312 GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA------------IIQDQTFKFLEKLQTLDLRDNALTTI--  377 (844)
T ss_dssp             TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCC------------CCCSSCSCSCCCCCEEEEETCCSCCC--
T ss_pred             CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCC------------ccChhhhcCCCCCCEEECCCCCCCcc--
Confidence            66666666666666654422 3455666666666666554            44444466666677777766666532  


Q ss_pred             ccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhh
Q 048635          369 KSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTT  448 (562)
Q Consensus       369 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  448 (562)
                         ..+++|+.|++++|++... |..   ..+++.|++++|++.+.. ....+..+++|++|++++|++++..+...+..
T Consensus       378 ---~~~~~L~~L~l~~N~l~~l-~~~---~~~l~~L~ls~N~l~~l~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  449 (844)
T 3j0a_A          378 ---HFIPSIPDIFLSGNKLVTL-PKI---NLTANLIHLSENRLENLD-ILYFLLRVPHLQILILNQNRFSSCSGDQTPSE  449 (844)
T ss_dssp             ---SSCCSCSEEEEESCCCCCC-CCC---CTTCCEEECCSCCCCSST-THHHHTTCTTCCEEEEESCCCCCCCSSSSSCS
T ss_pred             ---cCCCCcchhccCCCCcccc-ccc---ccccceeecccCccccCc-hhhhhhcCCccceeeCCCCccccccccccccc
Confidence               1244555555555554431 111   223333333333333211 01112245555555555555543322211111


Q ss_pred             -hhhhhhhh-hCCCc-----ccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCC
Q 048635          449 -LGMRYQAT-NKRCR-----DQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNF  521 (562)
Q Consensus       449 -~~l~~~~~-~~~~~-----~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  521 (562)
                       ..+..+.. .+.+.     +..+..+..+++|+.|+|++|.+++..|..|..+++|++|+|++|++++..|..+.  ++
T Consensus       450 ~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~  527 (844)
T 3j0a_A          450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--AN  527 (844)
T ss_dssp             CTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SC
T ss_pred             CCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--cc
Confidence             12222211 11121     34456688889999999999999988888899999999999999999976666555  78


Q ss_pred             CCeEeCcCCcceecCCCCCCCCccccchHHHH
Q 048635          522 LSVLNLSYNNLVGQIPTAKHVLPNFNLHRRQL  553 (562)
Q Consensus       522 L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~l  553 (562)
                      |++|++++|++++.+|..+..+..+++.+|.+
T Consensus       528 L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~  559 (844)
T 3j0a_A          528 LEILDISRNQLLAPNPDVFVSLSVLDITHNKF  559 (844)
T ss_dssp             CCEEEEEEECCCCCCSCCCSSCCEEEEEEECC
T ss_pred             ccEEECCCCcCCCCChhHhCCcCEEEecCCCc
Confidence            99999999999999998888888888777654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-45  Score=391.00  Aligned_cols=434  Identities=22%  Similarity=0.255  Sum_probs=290.8

Q ss_pred             CCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCC
Q 048635           38 GHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGF  117 (562)
Q Consensus        38 ~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~  117 (562)
                      .+++.||++++ .+....              +..|.++++|++|++++|++++..+..|.++++|++|++++|.+.   
T Consensus        28 ~~l~~L~Ls~n-~l~~~~--------------~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~---   89 (570)
T 2z63_A           28 FSTKNLDLSFN-PLRHLG--------------SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ---   89 (570)
T ss_dssp             SSCCEEECCSC-CCCEEC--------------TTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC---
T ss_pred             ccccEEEccCC-ccCccC--------------hhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC---
Confidence            57999999999 666654              446778888888888888888777777888888888888888742   


Q ss_pred             CccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCc-cchhcccccCCCCcccccCCC
Q 048635          118 SWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGP-INHHLANLRSHSQFFFVANLL  196 (562)
Q Consensus       118 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~~~~~~~l~~l~  196 (562)
                           ...+..|+++++|++|++++|.++.++.   ..++.+++|++|++++|.+.+. .|..            +++++
T Consensus        90 -----~~~~~~~~~l~~L~~L~L~~n~l~~l~~---~~~~~l~~L~~L~L~~n~l~~~~lp~~------------~~~l~  149 (570)
T 2z63_A           90 -----SLALGAFSGLSSLQKLVAVETNLASLEN---FPIGHLKTLKELNVAHNLIQSFKLPEY------------FSNLT  149 (570)
T ss_dssp             -----EECTTTTTTCTTCCEEECTTSCCCCSTT---CSCTTCTTCCEEECCSSCCCCCCCCGG------------GGGCT
T ss_pred             -----ccCHhhhcCccccccccccccccccCCC---ccccccccccEEecCCCccceecChhh------------hcccC
Confidence                 4445677888888888888888877764   2467788888888888877652 3433            44455


Q ss_pred             CCCEEEccCCcCcccCChhhhCCCCc----cEEeccCCCCCCCCCCCCCCCCCCCEEEccCC------------------
Q 048635          197 NLTNLDLSQCDLRGKYPEKILQVSTL----ETLDLSYNPLLQGSLPNFPKNSYLQNLNLANT------------------  254 (562)
Q Consensus       197 ~L~~L~l~~~~~~~~~~~~l~~l~~L----~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n------------------  254 (562)
                      +|++|++++|.+++..+..+..+++|    +.+++++|.+.......+... +|+.|++++|                  
T Consensus       150 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~  228 (570)
T 2z63_A          150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLE  228 (570)
T ss_dssp             TCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCE
T ss_pred             CCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccc
Confidence            67777777777776666666666555    667777776544433333322 4555555544                  


Q ss_pred             ----------------------------------------cCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCC
Q 048635          255 ----------------------------------------SFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQL  294 (562)
Q Consensus       255 ----------------------------------------~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L  294 (562)
                                                              .+.+..+..+..+++|++|++++|.++ .+|..+..+ +|
T Consensus       229 ~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L  306 (570)
T 2z63_A          229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GW  306 (570)
T ss_dssp             EEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CC
T ss_pred             eeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-Cc
Confidence                                                    222334455555666666666666665 455555555 66


Q ss_pred             CeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCc-----------ceEECCCCcCcccC--CccccCCCCCcCEEECcCC
Q 048635          295 FHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLN-----------GVLNLGRNNLNGTL--SDIIFPRNCGLHILDLSGN  361 (562)
Q Consensus       295 ~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~-----------~~l~l~~~~~~~~~--~~~~~~~~~~L~~L~L~~n  361 (562)
                      ++|++++|.+... +. ..+++|+.|++++|.+.           +.+++++|.+.+..  +.. +..+++|+.|++++|
T Consensus       307 ~~L~l~~n~~~~l-~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~~~~L~~L~l~~n  383 (570)
T 2z63_A          307 QHLELVNCKFGQF-PT-LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS-DFGTTSLKYLDLSFN  383 (570)
T ss_dssp             SEEEEESCBCSSC-CB-CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHH-HHTCSCCCEEECCSC
T ss_pred             cEEeeccCccccc-Cc-ccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccccccc-ccccCccCEEECCCC
Confidence            6666666666522 21 34555666666555443           22333333332211  222 445556666666666


Q ss_pred             cccccCCccCCCCCCCCEEEcccCCCCCcch-HHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCc
Q 048635          362 QLQGVVPKSLANCNMLQVLDFRNNHISDNFP-CWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGR  440 (562)
Q Consensus       362 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  440 (562)
                      .+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..  +..+..+++|++|++++|.+.  
T Consensus       384 ~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~--  458 (570)
T 2z63_A          384 GVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF--NGIFNGLSSLEVLKMAGNSFQ--  458 (570)
T ss_dssp             SEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECC--TTTTTTCTTCCEEECTTCEEG--
T ss_pred             cccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccc--hhhhhcCCcCcEEECcCCcCc--
Confidence            66543333 5566666666666666655433 34556666666666666665543  555566666666666666652  


Q ss_pred             CChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCC
Q 048635          441 LSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLN  520 (562)
Q Consensus       441 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  520 (562)
                                          .+.+|..+..+++|++|++++|++++..|..|..+++|++|++++|++++..|..+..++
T Consensus       459 --------------------~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  518 (570)
T 2z63_A          459 --------------------ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT  518 (570)
T ss_dssp             --------------------GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             --------------------cccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhccc
Confidence                                145677889999999999999999988899999999999999999999988888899999


Q ss_pred             CCCeEeCcCCcceecCCCCC
Q 048635          521 FLSVLNLSYNNLVGQIPTAK  540 (562)
Q Consensus       521 ~L~~L~l~~n~l~~~~p~~~  540 (562)
                      +|++|++++|++.+..|...
T Consensus       519 ~L~~L~l~~N~~~~~~~~~~  538 (570)
T 2z63_A          519 SLQKIWLHTNPWDCSCPRID  538 (570)
T ss_dssp             TCCEEECCSSCBCCCTTTTH
T ss_pred             CCcEEEecCCcccCCCcchH
Confidence            99999999999999888543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=8.3e-45  Score=387.94  Aligned_cols=427  Identities=18%  Similarity=0.130  Sum_probs=297.9

Q ss_pred             CCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCC
Q 048635           38 GHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGF  117 (562)
Q Consensus        38 ~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~  117 (562)
                      .++++||++++ .+....              +..|.++++|++|++++|.+++..|.+|+++++|++|++++|.+.   
T Consensus        56 ~~L~~L~Ls~n-~l~~i~--------------~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~---  117 (606)
T 3vq2_A           56 SELQWLDLSRC-EIETIE--------------DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA---  117 (606)
T ss_dssp             TTCCEEECTTC-CCCEEC--------------TTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCC---
T ss_pred             ccCcEEeCCCC-cccccC--------------HHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccc---
Confidence            68999999999 777665              567888999999999999998777888999999999999998853   


Q ss_pred             CccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCC---------
Q 048635          118 SWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQ---------  188 (562)
Q Consensus       118 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~---------  188 (562)
                           ...+..++++++|++|++++|.+++...  +..+.++++|++|++++|.+.+..+..++.+..+..         
T Consensus       118 -----~~~~~~~~~l~~L~~L~L~~n~l~~~~l--p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~  190 (606)
T 3vq2_A          118 -----SLESFPIGQLITLKKLNVAHNFIHSCKL--PAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL  190 (606)
T ss_dssp             -----CSSSSCCTTCTTCCEEECCSSCCCCCCC--CGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred             -----cccccccCCCCCCCEEeCCCCcccceec--hHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence                 4445668889999999999998876331  256788899999999999888877776655443210         


Q ss_pred             ------cccccCCCCCCEEEccCCcCc-----------------------------------------------------
Q 048635          189 ------FFFVANLLNLTNLDLSQCDLR-----------------------------------------------------  209 (562)
Q Consensus       189 ------~~~l~~l~~L~~L~l~~~~~~-----------------------------------------------------  209 (562)
                            +.......+|++|++++|.+.                                                     
T Consensus       191 n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~  270 (606)
T 3vq2_A          191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY  270 (606)
T ss_dssp             CCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECC
T ss_pred             CCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccc
Confidence                  111222337888888887653                                                     


Q ss_pred             -----ccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccC
Q 048635          210 -----GKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPI  284 (562)
Q Consensus       210 -----~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~  284 (562)
                           +..|. +..+++|+.|+++++.+.  .++.+..+++|++|++++|.+ +.+| .+ .+++|++|++++|...+..
T Consensus       271 ~~~~~~~~~~-~~~l~~L~~L~l~~~~~~--~l~~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~  344 (606)
T 3vq2_A          271 TNDFSDDIVK-FHCLANVSAMSLAGVSIK--YLEDVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF  344 (606)
T ss_dssp             CTTCCGGGGS-CGGGTTCSEEEEESCCCC--CCCCCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC
T ss_pred             cccccccccc-cccCCCCCEEEecCccch--hhhhccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch
Confidence                 11222 455688899999998764  344788899999999999999 5667 45 8999999999999665443


Q ss_pred             CccCCCCCCCCeeeCcCCccccc---CCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCC
Q 048635          285 PTSTTNLTQLFHVDFSSNHFSGP---IPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGN  361 (562)
Q Consensus       285 ~~~l~~l~~L~~L~l~~n~~~~~---~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n  361 (562)
                        .+..+++|++|++++|.+.+.   ...+..+++|++|++++|.++            .+|.. +..+++|+.|++++|
T Consensus       345 --~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~------------~~~~~-~~~l~~L~~L~l~~n  409 (606)
T 3vq2_A          345 --KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI------------IMSAN-FMGLEELQHLDFQHS  409 (606)
T ss_dssp             --CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE------------EECCC-CTTCTTCCEEECTTS
T ss_pred             --hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc------------cchhh-ccCCCCCCeeECCCC
Confidence              577899999999999999875   334578899999999999876            23322 444455555555555


Q ss_pred             cccccCC-ccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccce-ecCCCCCCCCCCCCCEEEcCCCcCCC
Q 048635          362 QLQGVVP-KSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSG-HISYPRNNVSWPLLQIVDFASNKFGG  439 (562)
Q Consensus       362 ~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~~~L~~L~l~~n~~~~  439 (562)
                      .+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+ ..  +..+..+++|++|++++|++++
T Consensus       410 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~Ls~n~l~~  487 (606)
T 3vq2_A          410 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL--SNVFANTTNLTFLDLSKCQLEQ  487 (606)
T ss_dssp             EEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE--CSCCTTCTTCCEEECTTSCCCE
T ss_pred             ccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcch--HHhhccCCCCCEEECCCCcCCc
Confidence            5544443 344455555555555555554444445555555555555555443 12  4444455555555555555544


Q ss_pred             cCChhhhhhhhhhhhhh-hCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCC-CCCeeeCCCCcccccCh
Q 048635          440 RLSQKCSTTLGMRYQAT-NKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLK-QIESLDLSMNNLSGKIP  513 (562)
Q Consensus       440 ~~~~~~~~~~~l~~~~~-~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p  513 (562)
                      ..|..+.....++.+.. .+.+.+..|..+..+++|++|++++|+++ .+|..+..++ +|++|++++|.+....+
T Consensus       488 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          488 ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             cChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            43333322223332222 33346667888999999999999999999 6777799887 69999999999986444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.9e-44  Score=380.60  Aligned_cols=451  Identities=18%  Similarity=0.150  Sum_probs=348.8

Q ss_pred             CCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCC
Q 048635           38 GHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGF  117 (562)
Q Consensus        38 ~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~  117 (562)
                      .++++||++++ .+.+..              +..|.++++|++|++++|++++..|++|.++++|++|++++|.+    
T Consensus        26 ~~L~~L~Ls~n-~l~~~~--------------~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l----   86 (549)
T 2z81_A           26 AAMKSLDLSFN-KITYIG--------------HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL----   86 (549)
T ss_dssp             TTCCEEECCSS-CCCEEC--------------SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC----
T ss_pred             CCccEEECcCC-ccCccC--------------hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc----
Confidence            47999999999 676665              56799999999999999999988889999999999999999985    


Q ss_pred             CccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCC
Q 048635          118 SWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLN  197 (562)
Q Consensus       118 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~  197 (562)
                          ....+..|+++++|++|++++|.++.++.  ...+..+++|++|++++|.+.+..+.           ..+.++++
T Consensus        87 ----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~-----------~~~~~l~~  149 (549)
T 2z81_A           87 ----SSLSSSWFGPLSSLKYLNLMGNPYQTLGV--TSLFPNLTNLQTLRIGNVETFSEIRR-----------IDFAGLTS  149 (549)
T ss_dssp             ----CSCCHHHHTTCTTCCEEECTTCCCSSSCS--SCSCTTCTTCCEEEEEESSSCCEECT-----------TTTTTCCE
T ss_pred             ----CccCHHHhccCCCCcEEECCCCcccccch--hhhhhccCCccEEECCCCccccccCH-----------hhhhcccc
Confidence                35556679999999999999999986542  24678999999999999985444331           22566778


Q ss_pred             CCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCC--C-CCCcCCCCCcEEE
Q 048635          198 LTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGIL--P-DPIGILKYLTRVD  274 (562)
Q Consensus       198 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~-~~~~~~~~L~~L~  274 (562)
                      |++|++++|.+++..|..+..+++|++|+++.|.+.......+..+++|++|++++|.+++..  + .....+++|+.|+
T Consensus       150 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~  229 (549)
T 2z81_A          150 LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA  229 (549)
T ss_dssp             EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEE
T ss_pred             cCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhccccee
Confidence            999999999999889999999999999999988653221112234789999999999988642  1 2234578899999


Q ss_pred             ccCCcccccCC----ccCCCCCCCCeeeCcCCcccccC-------CCCCCCCCCCEEEcCCCCCc---------------
Q 048635          275 LRSCSFTGPIP----TSTTNLTQLFHVDFSSNHFSGPI-------PSFHESRNLNYLDLSSNNLN---------------  328 (562)
Q Consensus       275 l~~n~l~~~~~----~~l~~l~~L~~L~l~~n~~~~~~-------~~~~~~~~L~~L~l~~n~l~---------------  328 (562)
                      +++|.+++..+    ..+..+++|+.+++++|.+.+..       ..+..+.+++.+++.++.+.               
T Consensus       230 l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~  309 (549)
T 2z81_A          230 FRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL  309 (549)
T ss_dssp             EESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHS
T ss_pred             ccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhc
Confidence            99998875432    34456788889999888876532       12355667777777666432               


Q ss_pred             ---ceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCC---ccCCCCCCCCEEEcccCCCCCcch--HHhhcCCC
Q 048635          329 ---GVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVP---KSLANCNMLQVLDFRNNHISDNFP--CWLRNASS  400 (562)
Q Consensus       329 ---~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~~n~l~~~~~--~~l~~l~~  400 (562)
                         +.+++++|.+. .+|..++..+++|+.|++++|.+.+..|   ..+..+++|++|++++|++++..+  ..+..+++
T Consensus       310 ~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~  388 (549)
T 2z81_A          310 EKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN  388 (549)
T ss_dssp             TTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTT
T ss_pred             ccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCC
Confidence               34666666664 7887766778999999999999987653   347789999999999999988543  56889999


Q ss_pred             CCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhh-hCCCcccccccccCcCCCCEEeC
Q 048635          401 LQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQAT-NKRCRDQATEEMGRFKSLYALNM  479 (562)
Q Consensus       401 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~l~~l~~L~~L~L  479 (562)
                      |++|++++|++..   +|..+..+++|++|++++|++.+ +|...+.  .+..+.. ++.+.+.    +..+++|++|++
T Consensus       389 L~~L~Ls~N~l~~---lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~~~--~L~~L~Ls~N~l~~~----~~~l~~L~~L~L  458 (549)
T 2z81_A          389 LTSLDISRNTFHP---MPDSCQWPEKMRFLNLSSTGIRV-VKTCIPQ--TLEVLDVSNNNLDSF----SLFLPRLQELYI  458 (549)
T ss_dssp             CCEEECTTCCCCC---CCSCCCCCTTCCEEECTTSCCSC-CCTTSCT--TCSEEECCSSCCSCC----CCCCTTCCEEEC
T ss_pred             CCEEECCCCCCcc---CChhhcccccccEEECCCCCccc-ccchhcC--CceEEECCCCChhhh----cccCChhcEEEC
Confidence            9999999999883   47778889999999999999863 2222211  2222222 3333332    257889999999


Q ss_pred             cCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceecCC
Q 048635          480 SHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIP  537 (562)
Q Consensus       480 s~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p  537 (562)
                      ++|+++ .+|. ...+++|++|+|++|++++..|+.+..+++|++|++++|++.+..|
T Consensus       459 s~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          459 SRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             CCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            999998 6665 4678999999999999998888888999999999999999887766

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.1e-44  Score=380.02  Aligned_cols=431  Identities=22%  Similarity=0.205  Sum_probs=330.7

Q ss_pred             CCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCcccccc
Q 048635           77 TNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKAL  156 (562)
Q Consensus        77 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l  156 (562)
                      +++++|++++|.+++..+.+|.++++|++|++++|.+        ....+..|+++++|++|++++|.++.+++   ..+
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i--------~~i~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~   96 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--------QTIEDGAYQSLSHLSTLILTGNPIQSLAL---GAF   96 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCC--------CEECTTTTTTCTTCCEEECTTCCCCEECT---TTT
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcC--------CccCcccccCchhCCEEeCcCCcCCccCH---hhh
Confidence            5799999999999988888999999999999999985        34556789999999999999999988875   578


Q ss_pred             CCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcc-cCChhhhCCCCccEEeccCCCCCCC
Q 048635          157 SFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRG-KYPEKILQVSTLETLDLSYNPLLQG  235 (562)
Q Consensus       157 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~~~~~~~  235 (562)
                      ..+++|++|++++|.+.+..+..            ++++++|++|++++|.+++ .+|..+.++++|++|++++|.+...
T Consensus        97 ~~l~~L~~L~L~~n~l~~l~~~~------------~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~  164 (570)
T 2z63_A           97 SGLSSLQKLVAVETNLASLENFP------------IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (570)
T ss_dssp             TTCTTCCEEECTTSCCCCSTTCS------------CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred             cCccccccccccccccccCCCcc------------ccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence            89999999999999987754322            5677889999999999986 4689999999999999999987665


Q ss_pred             CCCCCCCCCCC----CEEEccCCcCCCCCCCCCcCCCCCcEEEccCC---------------------------------
Q 048635          236 SLPNFPKNSYL----QNLNLANTSFSGILPDPIGILKYLTRVDLRSC---------------------------------  278 (562)
Q Consensus       236 ~~~~~~~~~~L----~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n---------------------------------  278 (562)
                      ....+..+++|    +.|++++|.+++..+..+... +|++|++++|                                 
T Consensus       165 ~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l  243 (570)
T 2z63_A          165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL  243 (570)
T ss_dssp             CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSC
T ss_pred             cHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhh
Confidence            55566667777    899999999998777777655 7888888776                                 


Q ss_pred             -------------------------cccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEEC
Q 048635          279 -------------------------SFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNL  333 (562)
Q Consensus       279 -------------------------~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l  333 (562)
                                               .+.+..+..+..+++|++|++++|.+.+....+..+ +|++|++++|.+.     
T Consensus       244 ~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-----  317 (570)
T 2z63_A          244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-----  317 (570)
T ss_dssp             EECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-----
T ss_pred             hhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-----
Confidence                                     233345566777899999999999988666566667 9999999999876     


Q ss_pred             CCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcc--hHHhhcCCCCCEEEccCccc
Q 048635          334 GRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNF--PCWLRNASSLQVLVLRSNNF  411 (562)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~l~~n~l  411 (562)
                             .+|.   ..+++|+.|++++|.+.+..+.  ..+++|++|++++|++++..  +..+..+++|++|++++|.+
T Consensus       318 -------~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l  385 (570)
T 2z63_A          318 -------QFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV  385 (570)
T ss_dssp             -------SCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSE
T ss_pred             -------ccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcc
Confidence                   3443   2345566777777666544433  55666777777777666533  45566667777777777766


Q ss_pred             ceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhh-hhhhhhh-hCCCcccccccccCcCCCCEEeCcCCcCc-cCc
Q 048635          412 SGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTL-GMRYQAT-NKRCRDQATEEMGRFKSLYALNMSHNALT-GSI  488 (562)
Q Consensus       412 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~~~~-~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~-~~~  488 (562)
                      .+..  +. +..+++|++|++++|.+.+..+...+... .++.+.. .+.+.+..+..+..+++|++|++++|.++ +.+
T Consensus       386 ~~~~--~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  462 (570)
T 2z63_A          386 ITMS--SN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL  462 (570)
T ss_dssp             EEEE--EE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred             cccc--cc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccc
Confidence            6543  22 55666677777776666555443222222 3333322 33456667788899999999999999997 578


Q ss_pred             ChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceecCCCCCCC---CccccchHHH
Q 048635          489 PSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKHV---LPNFNLHRRQ  552 (562)
Q Consensus       489 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~---~~~l~~~~~~  552 (562)
                      |..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..   +..+++.+|.
T Consensus       463 p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             hhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence            999999999999999999999888999999999999999999999887766544   4444555544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.2e-43  Score=378.74  Aligned_cols=433  Identities=17%  Similarity=0.246  Sum_probs=339.3

Q ss_pred             CCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCC--c-----------------------cccCCCccccc-
Q 048635           77 TNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFS--W-----------------------RLGIPNFNFFQ-  130 (562)
Q Consensus        77 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--~-----------------------~~~~~~~~~~~-  130 (562)
                      .+++.|+|++++++|.+|++++++++|++|++++|.+..+..  .                       .+....+..+. 
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~  160 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD  160 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence            467889999999999999999999999999999996411000  0                       00000111111 


Q ss_pred             ------------------CCCCCCEEEcc--CccCCCCCCccccccCCCCCCCEEecccCCCCCc-cchhccccc--CC-
Q 048635          131 ------------------NLKELRELYLD--NVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGP-INHHLANLR--SH-  186 (562)
Q Consensus       131 ------------------~l~~L~~L~l~--~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~--~~-  186 (562)
                                        ....++.+.+.  .|+++.++    ..+.++++|++|++++|.+++. .+..+....  .. 
T Consensus       161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip----~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~  236 (636)
T 4eco_A          161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVS----KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ  236 (636)
T ss_dssp             HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEEC----GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred             HHHHHhhcCccccccccccccchhhhhhccccCCCccCC----HHHhcccCCCEEECcCCccccccccccccccccchhc
Confidence                              11122222222  45666654    5688999999999999999884 000000000  00 


Q ss_pred             -CCccccc--CCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCC-CCCCCCC-CCCC------CCCCCEEEccCCc
Q 048635          187 -SQFFFVA--NLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNP-LLQGSLP-NFPK------NSYLQNLNLANTS  255 (562)
Q Consensus       187 -~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~-~~~~------~~~L~~L~L~~n~  255 (562)
                       .-|..++  ++++|++|++++|.+.+.+|..+.++++|++|++++|. +....++ .+..      +++|++|++++|.
T Consensus       237 ~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~  316 (636)
T 4eco_A          237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN  316 (636)
T ss_dssp             HHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred             ccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence             0023345  77889999999999999999999999999999999997 5320222 3333      3899999999999


Q ss_pred             CCCCCCC--CCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCC-CCEEEcCCCCCcceEE
Q 048635          256 FSGILPD--PIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRN-LNYLDLSSNNLNGVLN  332 (562)
Q Consensus       256 l~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~-L~~L~l~~n~l~~~l~  332 (562)
                      ++ .+|.  .++.+++|++|++++|.+++.+| .+..+++|++|++++|.+...+..+..+++ |++|++++|.++    
T Consensus       317 l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~----  390 (636)
T 4eco_A          317 LK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK----  390 (636)
T ss_dssp             CS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS----
T ss_pred             CC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc----
Confidence            99 7788  89999999999999999998888 899999999999999999966667888898 999999999887    


Q ss_pred             CCCCcCcccCCccccCCC--CCcCEEECcCCcccccCCccCC-------CCCCCCEEEcccCCCCCcchHHhhcCCCCCE
Q 048635          333 LGRNNLNGTLSDIIFPRN--CGLHILDLSGNQLQGVVPKSLA-------NCNMLQVLDFRNNHISDNFPCWLRNASSLQV  403 (562)
Q Consensus       333 l~~~~~~~~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~l~-------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  403 (562)
                              .+|.. +...  ++|+.|++++|.+.+..|..+.       .+++|++|++++|+++...+..+..+++|++
T Consensus       391 --------~lp~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~  461 (636)
T 4eco_A          391 --------YIPNI-FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS  461 (636)
T ss_dssp             --------SCCSC-CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSE
T ss_pred             --------ccchh-hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCE
Confidence                    56654 4443  4899999999999999998888       7889999999999999866666778999999


Q ss_pred             EEccCcccceecCCCCCCCC--------CCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCccccccccc--CcCC
Q 048635          404 LVLRSNNFSGHISYPRNNVS--------WPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMG--RFKS  473 (562)
Q Consensus       404 L~l~~n~l~~~~~~~~~~~~--------~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~--~l~~  473 (562)
                      |++++|.+...   +.....        +++|++|++++|+++                        .+|..+.  .+++
T Consensus       462 L~Ls~N~l~~i---~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~------------------------~lp~~~~~~~l~~  514 (636)
T 4eco_A          462 INLMGNMLTEI---PKNSLKDENENFKNTYLLTSIDLRFNKLT------------------------KLSDDFRATTLPY  514 (636)
T ss_dssp             EECCSSCCSBC---CSSSSEETTEECTTGGGCCEEECCSSCCC------------------------BCCGGGSTTTCTT
T ss_pred             EECCCCCCCCc---CHHHhccccccccccCCccEEECcCCcCC------------------------ccChhhhhccCCC
Confidence            99999999843   333322        239999999999983                        4566666  8999


Q ss_pred             CCEEeCcCCcCccCcChhccCCCCCCeeeC------CCCcccccChhhhcCCCCCCeEeCcCCcceecCCC-CCCCCccc
Q 048635          474 LYALNMSHNALTGSIPSSFGNLKQIESLDL------SMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPT-AKHVLPNF  546 (562)
Q Consensus       474 L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~L------s~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~-~~~~~~~l  546 (562)
                      |+.|++++|++++ +|..+..+++|++|+|      ++|++.+.+|..+..+++|++|++++|++ +.+|. ....+..+
T Consensus       515 L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L  592 (636)
T 4eco_A          515 LVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITPNISVL  592 (636)
T ss_dssp             CCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCTTCCEE
T ss_pred             cCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHhCcCCEE
Confidence            9999999999996 8999999999999999      56888889999999999999999999999 67876 45778888


Q ss_pred             cchHHHHhhhh
Q 048635          547 NLHRRQLQAMK  557 (562)
Q Consensus       547 ~~~~~~l~~l~  557 (562)
                      ++++|++..+.
T Consensus       593 ~Ls~N~l~~~~  603 (636)
T 4eco_A          593 DIKDNPNISID  603 (636)
T ss_dssp             ECCSCTTCEEE
T ss_pred             ECcCCCCcccc
Confidence            88888766544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.4e-42  Score=382.80  Aligned_cols=444  Identities=21%  Similarity=0.172  Sum_probs=268.6

Q ss_pred             ccccCCCCCCCEEecCCccCcccC-CccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCC
Q 048635           70 QFGLANLTNLTYLNLSHCGFTGEI-PTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGL  148 (562)
Q Consensus        70 ~~~l~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~  148 (562)
                      +.+|.++++|++|++++|...+.+ |.+|.++++|++|++++|.+        ....|..|.++++|++|++++|.+++.
T Consensus        41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l--------~~~~p~~~~~l~~L~~L~Ls~n~l~~~  112 (844)
T 3j0a_A           41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI--------YFLHPDAFQGLFHLFELRLYFCGLSDA  112 (844)
T ss_dssp             SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC--------CEECTTSSCSCSSCCCEECTTCCCSSC
T ss_pred             hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC--------cccCHhHccCCcccCEeeCcCCCCCcc
Confidence            445666666666666666433333 55566666666666666653        234455666666666666666666542


Q ss_pred             CCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCC--CCccEEe
Q 048635          149 GTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQV--STLETLD  226 (562)
Q Consensus       149 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~  226 (562)
                      .+. ...+..+++|++|++++|.+.+..+.           ..++++++|++|++++|.+++..+..+..+  ++|+.|+
T Consensus       113 ~~~-~~~~~~L~~L~~L~Ls~N~l~~~~~~-----------~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~  180 (844)
T 3j0a_A          113 VLK-DGYFRNLKALTRLDLSKNQIRSLYLH-----------PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS  180 (844)
T ss_dssp             CST-TCCCSSCSSCCEEEEESCCCCCCCCC-----------GGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred             ccc-CccccccCCCCEEECCCCcccccccc-----------hhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence            211 01255666666666666666543321           124455566666666666666666666555  6666666


Q ss_pred             ccCCCCCCCCCCCCCCCCC------CCEEEccCCcCCCCCCCCCcC----------------------------------
Q 048635          227 LSYNPLLQGSLPNFPKNSY------LQNLNLANTSFSGILPDPIGI----------------------------------  266 (562)
Q Consensus       227 L~~~~~~~~~~~~~~~~~~------L~~L~L~~n~l~~~~~~~~~~----------------------------------  266 (562)
                      ++.|.+.......+..+++      |+.|++++|.+++..+..+..                                  
T Consensus       181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f  260 (844)
T 3j0a_A          181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF  260 (844)
T ss_dssp             ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT
T ss_pred             CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh
Confidence            6666554433333333332      677777766555433332211                                  


Q ss_pred             ----CCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCC-CCCCCCCCCEEEcCCCCCcceEECCCCcCccc
Q 048635          267 ----LKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIP-SFHESRNLNYLDLSSNNLNGVLNLGRNNLNGT  341 (562)
Q Consensus       267 ----~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~  341 (562)
                          .++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+ .+..+++|++|++++|.++            .
T Consensus       261 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~------------~  328 (844)
T 3j0a_A          261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG------------E  328 (844)
T ss_dssp             TTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCS------------C
T ss_pred             hccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCC------------c
Confidence                1455666666666555555555566666666666666555433 3455556666666665554            3


Q ss_pred             CCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCC
Q 048635          342 LSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNN  421 (562)
Q Consensus       342 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  421 (562)
                      ++...+.++++|+.|++++|.+.+..+..+..+++|++|++++|.+++.     ..+++|+.|++++|++...   +.  
T Consensus       329 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~l---~~--  398 (844)
T 3j0a_A          329 LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVTL---PK--  398 (844)
T ss_dssp             CCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCCC---CC--
T ss_pred             cCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcccc---cc--
Confidence            3223366666666677766666665556666666667777766666552     2256666666666666532   22  


Q ss_pred             CCCCCCCEEEcCCCcCCCcCChhhhhhh-hhhhhhh-hCCCcccccc-cccCcCCCCEEeCcCCcCc-----cCcChhcc
Q 048635          422 VSWPLLQIVDFASNKFGGRLSQKCSTTL-GMRYQAT-NKRCRDQATE-EMGRFKSLYALNMSHNALT-----GSIPSSFG  493 (562)
Q Consensus       422 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~~~~-~~~~~~~~~~-~l~~l~~L~~L~Ls~n~i~-----~~~p~~l~  493 (562)
                       ...+++.|++++|++.+.-.......+ .+..+.. .+.+.+..+. .+..+++|+.|++++|.++     +..+..|.
T Consensus       399 -~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~  477 (844)
T 3j0a_A          399 -INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE  477 (844)
T ss_dssp             -CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSS
T ss_pred             -cccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhc
Confidence             145677777887777654332222222 3333333 3334433222 3456788999999999886     34456688


Q ss_pred             CCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceecCCCCC-CCCccccchHHHHhhh
Q 048635          494 NLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAK-HVLPNFNLHRRQLQAM  556 (562)
Q Consensus       494 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~-~~~~~l~~~~~~l~~l  556 (562)
                      .+++|++|+|++|++++..|..+..+++|++|+|++|++++..|..+ ..+..+++++|++.+.
T Consensus       478 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~  541 (844)
T 3j0a_A          478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAP  541 (844)
T ss_dssp             CBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCC
T ss_pred             CcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCCCC
Confidence            99999999999999999889889999999999999999997666544 5677788888776654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.4e-43  Score=381.13  Aligned_cols=432  Identities=17%  Similarity=0.230  Sum_probs=332.8

Q ss_pred             CCCCEEecCCccCcccCCccCCCCCCCcEEeC-CCCCCCCCCCcccc-C-------------------------------
Q 048635           77 TNLTYLNLSHCGFTGEIPTEISSLPRLVTLDL-SSREPISGFSWRLG-I-------------------------------  123 (562)
Q Consensus        77 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l-~~n~~~~~~~~~~~-~-------------------------------  123 (562)
                      .+++.|+|+++++.|.+|++|+++++|++|+| ++|.+......... .                               
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            46788999999999999999999999999999 77753211000000 0                               


Q ss_pred             -----------CCcccccCCCCCCEEEccC--ccCCCCCCccccccCCCCCCCEEecccCCCCCc-cchhccccc--CC-
Q 048635          124 -----------PNFNFFQNLKELRELYLDN--VDLSGLGTERCKALSFLPNLQVLNLSSCLLLGP-INHHLANLR--SH-  186 (562)
Q Consensus       124 -----------~~~~~~~~l~~L~~L~l~~--~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~--~~-  186 (562)
                                 ..+....+...++.+.+..  |.++.+|    ..+..+++|++|++++|.+++. ++..+....  .. 
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP----~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~  478 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFIS----KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAK  478 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEEC----GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccchh----HHHhcCCCCCEEECcCCcCCCCccccccccccccccc
Confidence                       0000001122333333333  5666654    5688999999999999999882 110000000  00 


Q ss_pred             -CCccccc--CCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCC-CCCCCCC--------CCCCCCCCCEEEccCC
Q 048635          187 -SQFFFVA--NLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNP-LLQGSLP--------NFPKNSYLQNLNLANT  254 (562)
Q Consensus       187 -~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~--------~~~~~~~L~~L~L~~n  254 (562)
                       .-|..++  ++++|++|++++|.+.+.+|..+.++++|+.|++++|. +....++        .+..+++|+.|++++|
T Consensus       479 g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N  558 (876)
T 4ecn_A          479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN  558 (876)
T ss_dssp             HHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred             ccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence             0023344  78899999999999999999999999999999999997 4320222        3345679999999999


Q ss_pred             cCCCCCCC--CCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCC-CCEEEcCCCCCcceE
Q 048635          255 SFSGILPD--PIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRN-LNYLDLSSNNLNGVL  331 (562)
Q Consensus       255 ~l~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~-L~~L~l~~n~l~~~l  331 (562)
                      .++ .+|.  .+..+++|+.|++++|.++ .+| .+..+++|+.|++++|.+...+..+..+++ |++|++++|.++   
T Consensus       559 ~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~---  632 (876)
T 4ecn_A          559 NLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK---  632 (876)
T ss_dssp             CCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC---
T ss_pred             cCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC---
Confidence            999 7787  8999999999999999999 777 899999999999999999965556788888 999999999886   


Q ss_pred             ECCCCcCcccCCccccCCCC--CcCEEECcCCcccccCCccC---C--CCCCCCEEEcccCCCCCcchHHhhcCCCCCEE
Q 048635          332 NLGRNNLNGTLSDIIFPRNC--GLHILDLSGNQLQGVVPKSL---A--NCNMLQVLDFRNNHISDNFPCWLRNASSLQVL  404 (562)
Q Consensus       332 ~l~~~~~~~~~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~l---~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  404 (562)
                               .+|.. +....  +|+.|++++|.+.+.+|...   .  .+++|+.|++++|++....+..+..+++|+.|
T Consensus       633 ---------~lp~~-~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L  702 (876)
T 4ecn_A          633 ---------YIPNI-FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTI  702 (876)
T ss_dssp             ---------SCCSC-CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEE
T ss_pred             ---------cCchh-hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEE
Confidence                     56654 55444  49999999999987665432   2  34589999999999997555556689999999


Q ss_pred             EccCcccceecCCCCCCC--------CCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCccccccccc--CcCCC
Q 048635          405 VLRSNNFSGHISYPRNNV--------SWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMG--RFKSL  474 (562)
Q Consensus       405 ~l~~n~l~~~~~~~~~~~--------~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~--~l~~L  474 (562)
                      ++++|.+...   +....        .+++|++|++++|+++                        .+|..+.  .+++|
T Consensus       703 ~Ls~N~L~~i---p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~------------------------~lp~~l~~~~l~~L  755 (876)
T 4ecn_A          703 ILSNNLMTSI---PENSLKPKDGNYKNTYLLTTIDLRFNKLT------------------------SLSDDFRATTLPYL  755 (876)
T ss_dssp             ECCSCCCSCC---CTTSSSCTTSCCTTGGGCCEEECCSSCCC------------------------CCCGGGSTTTCTTC
T ss_pred             ECCCCcCCcc---ChHHhccccccccccCCccEEECCCCCCc------------------------cchHHhhhccCCCc
Confidence            9999999843   44333        2349999999999983                        4566666  89999


Q ss_pred             CEEeCcCCcCccCcChhccCCCCCCeeeCCC------CcccccChhhhcCCCCCCeEeCcCCcceecCCC-CCCCCcccc
Q 048635          475 YALNMSHNALTGSIPSSFGNLKQIESLDLSM------NNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPT-AKHVLPNFN  547 (562)
Q Consensus       475 ~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~------n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~-~~~~~~~l~  547 (562)
                      +.|+|++|.+++ +|..+..+++|+.|+|++      |++.+.+|..+..+++|++|+|++|++ +.+|. ....+..++
T Consensus       756 ~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~Ld  833 (876)
T 4ecn_A          756 SNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILD  833 (876)
T ss_dssp             CEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEE
T ss_pred             CEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEE
Confidence            999999999996 788999999999999976      888889999999999999999999999 68886 456788888


Q ss_pred             chHHHHhhhh
Q 048635          548 LHRRQLQAMK  557 (562)
Q Consensus       548 ~~~~~l~~l~  557 (562)
                      +++|++..+.
T Consensus       834 Ls~N~l~~i~  843 (876)
T 4ecn_A          834 IADNPNISID  843 (876)
T ss_dssp             CCSCTTCEEE
T ss_pred             CCCCCCCccC
Confidence            8888775543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.2e-42  Score=360.04  Aligned_cols=424  Identities=18%  Similarity=0.162  Sum_probs=285.3

Q ss_pred             CCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCC
Q 048635           38 GHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGF  117 (562)
Q Consensus        38 ~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~  117 (562)
                      .++++||++++ .+.+..              +..|.++++|++|++++|++++..|.+|+++++|++|++++|.+.   
T Consensus        21 ~~L~~L~Ls~n-~i~~~~--------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~---   82 (520)
T 2z7x_B           21 QKTTILNISQN-YISELW--------------TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV---   82 (520)
T ss_dssp             TTCSEEECCSS-CCCCCC--------------HHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC---
T ss_pred             ccccEEECCCC-cccccC--------------hhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee---
Confidence            56666666666 444333              456777777777777777777666777777777777777777642   


Q ss_pred             CccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCC
Q 048635          118 SWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLN  197 (562)
Q Consensus       118 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~  197 (562)
                            .+|..  .+++|++|++++|.++.++.  +..++.+++|++|++++|.+.+..               +..+++
T Consensus        83 ------~lp~~--~l~~L~~L~L~~N~l~~~~~--p~~~~~l~~L~~L~L~~n~l~~~~---------------~~~l~~  137 (520)
T 2z7x_B           83 ------KISCH--PTVNLKHLDLSFNAFDALPI--CKEFGNMSQLKFLGLSTTHLEKSS---------------VLPIAH  137 (520)
T ss_dssp             ------EEECC--CCCCCSEEECCSSCCSSCCC--CGGGGGCTTCCEEEEEESSCCGGG---------------GGGGTT
T ss_pred             ------ecCcc--ccCCccEEeccCCccccccc--hhhhccCCcceEEEecCcccchhh---------------cccccc
Confidence                  22332  67777777777777765432  145667777777777777765421               233344


Q ss_pred             C--CEEEccCCcC--cccCChhhhCCC-CccEEeccCCCCCCCCCC-CCCCCCCCCEEEccCCc-------CCCCCCCCC
Q 048635          198 L--TNLDLSQCDL--RGKYPEKILQVS-TLETLDLSYNPLLQGSLP-NFPKNSYLQNLNLANTS-------FSGILPDPI  264 (562)
Q Consensus       198 L--~~L~l~~~~~--~~~~~~~l~~l~-~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~L~~n~-------l~~~~~~~~  264 (562)
                      |  ++|++++|.+  .+..|..+..+. ....+++++|.+...... .+..+++|+.+++++|.       +.+.++ .+
T Consensus       138 L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l  216 (520)
T 2z7x_B          138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KL  216 (520)
T ss_dssp             SCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GG
T ss_pred             ceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hh
Confidence            5  7777777777  556666665544 222345555544322221 34456777777777765       333333 45


Q ss_pred             cCCCCCcEEEccCCcccccCCccCC---CCCCCCeeeCcCCcccccCC-CC-----CCCCCCCEEEcCCCCC--------
Q 048635          265 GILKYLTRVDLRSCSFTGPIPTSTT---NLTQLFHVDFSSNHFSGPIP-SF-----HESRNLNYLDLSSNNL--------  327 (562)
Q Consensus       265 ~~~~~L~~L~l~~n~l~~~~~~~l~---~l~~L~~L~l~~n~~~~~~~-~~-----~~~~~L~~L~l~~n~l--------  327 (562)
                      ..+++|+.|++++|.+.+..+..+.   ..++|++|++++|.+.+..| .+     ..+++|+.+++++|.+        
T Consensus       217 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~  296 (520)
T 2z7x_B          217 QTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIY  296 (520)
T ss_dssp             GGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHH
T ss_pred             ccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhh
Confidence            5566666666655555432111110   12356666666666654332 22     4455555555555543        


Q ss_pred             -------cceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCC--cchHHhhcC
Q 048635          328 -------NGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISD--NFPCWLRNA  398 (562)
Q Consensus       328 -------~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l  398 (562)
                             .+.+++++|.+.+ ++  ....+++|++|++++|.+++..|..+..+++|++|++++|++++  ..|..+..+
T Consensus       297 ~~~~~~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l  373 (520)
T 2z7x_B          297 EIFSNMNIKNFTVSGTRMVH-ML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM  373 (520)
T ss_dssp             HHHHTCCCSEEEEESSCCCC-CC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTC
T ss_pred             cccccCceeEEEcCCCcccc-cc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhC
Confidence                   1334444444332 11  12677889999999999998889999999999999999999997  456789999


Q ss_pred             CCCCEEEccCcccce-ecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEE
Q 048635          399 SSLQVLVLRSNNFSG-HISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYAL  477 (562)
Q Consensus       399 ~~L~~L~l~~n~l~~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L  477 (562)
                      ++|++|++++|.+.+ ..  ...+..+++|++|++++|++++..                       +..+.  ++|+.|
T Consensus       374 ~~L~~L~Ls~N~l~~~l~--~~~~~~l~~L~~L~Ls~N~l~~~~-----------------------~~~l~--~~L~~L  426 (520)
T 2z7x_B          374 KSLQQLDISQNSVSYDEK--KGDCSWTKSLLSLNMSSNILTDTI-----------------------FRCLP--PRIKVL  426 (520)
T ss_dssp             TTCCEEECCSSCCBCCGG--GCSCCCCTTCCEEECCSSCCCGGG-----------------------GGSCC--TTCCEE
T ss_pred             CCCCEEECCCCcCCcccc--cchhccCccCCEEECcCCCCCcch-----------------------hhhhc--ccCCEE
Confidence            999999999999987 33  335778899999999999985433                       33333  789999


Q ss_pred             eCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhh-hcCCCCCCeEeCcCCcceecCC
Q 048635          478 NMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQ-LASLNFLSVLNLSYNNLVGQIP  537 (562)
Q Consensus       478 ~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~l~~n~l~~~~p  537 (562)
                      ++++|+++ .+|..+..+++|++|++++|++++ +|.. +..+++|++|++++|++.+..+
T Consensus       427 ~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          427 DLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             ECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCC
Confidence            99999999 788888899999999999999994 5554 8999999999999999987544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=4.2e-39  Score=346.08  Aligned_cols=426  Identities=25%  Similarity=0.289  Sum_probs=285.5

Q ss_pred             CCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCC
Q 048635           38 GHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGF  117 (562)
Q Consensus        38 ~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~  117 (562)
                      ..+++|||++| .++...              +.+|.++++|++|+|++|+|++..|++|.++++|++|+|++|++    
T Consensus        52 ~~~~~LdLs~N-~i~~l~--------------~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l----  112 (635)
T 4g8a_A           52 FSTKNLDLSFN-PLRHLG--------------SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI----  112 (635)
T ss_dssp             TTCCEEECTTS-CCCEEC--------------TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC----
T ss_pred             cCCCEEEeeCC-CCCCCC--------------HHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC----
Confidence            47899999999 777655              56799999999999999999987788899999999999999985    


Q ss_pred             CccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCC
Q 048635          118 SWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLN  197 (562)
Q Consensus       118 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~  197 (562)
                          ....+.+|.++++|++|++++|+++.+++   ..++.+++|++|++++|.+.....           +..++.+++
T Consensus       113 ----~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~---~~~~~L~~L~~L~Ls~N~l~~~~~-----------~~~~~~l~~  174 (635)
T 4g8a_A          113 ----QSLALGAFSGLSSLQKLVAVETNLASLEN---FPIGHLKTLKELNVAHNLIQSFKL-----------PEYFSNLTN  174 (635)
T ss_dssp             ----CEECGGGGTTCTTCCEEECTTSCCCCSTT---CCCTTCTTCCEEECCSSCCCCCCC-----------CGGGGGCTT
T ss_pred             ----CCCCHHHhcCCCCCCEEECCCCcCCCCCh---hhhhcCcccCeeccccCccccCCC-----------chhhccchh
Confidence                34556778999999999999999998875   457889999999999998866421           223556678


Q ss_pred             CCEEEccCCcCcccCChhhhCCCC----ccEEeccCCCCCCCCCCCCCCCCCCCEEEccCC-------------------
Q 048635          198 LTNLDLSQCDLRGKYPEKILQVST----LETLDLSYNPLLQGSLPNFPKNSYLQNLNLANT-------------------  254 (562)
Q Consensus       198 L~~L~l~~~~~~~~~~~~l~~l~~----L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n-------------------  254 (562)
                      |++|++++|.+++..+..+..+.+    ...++++.|.+.......+. ...++.+++.+|                   
T Consensus       175 L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~  253 (635)
T 4g8a_A          175 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV  253 (635)
T ss_dssp             CCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEE
T ss_pred             hhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCccccc
Confidence            999999999888777766654332    23455665554322211111 111222222221                   


Q ss_pred             ---------------------------------------------------------------cCCCCCCCCCcCCCCCc
Q 048635          255 ---------------------------------------------------------------SFSGILPDPIGILKYLT  271 (562)
Q Consensus       255 ---------------------------------------------------------------~l~~~~~~~~~~~~~L~  271 (562)
                                                                                     .+...  ..+.....++
T Consensus       254 ~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~  331 (635)
T 4g8a_A          254 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQ  331 (635)
T ss_dssp             EEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCS
T ss_pred             ccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhh
Confidence                                                                           11110  0112223344


Q ss_pred             EEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCc---------------ceEECCCC
Q 048635          272 RVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLN---------------GVLNLGRN  336 (562)
Q Consensus       272 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~---------------~~l~l~~~  336 (562)
                      .|++.+|.+....+   ..+..|+.+++..|.... ......+++|+.+++++|.+.               ..+++..+
T Consensus       332 ~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~-~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~  407 (635)
T 4g8a_A          332 HLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGN-AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN  407 (635)
T ss_dssp             EEEEESCEESSCCC---CBCTTCCEEEEESCCSCC-BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSC
T ss_pred             hhhcccccccCcCc---ccchhhhhcccccccCCC-Ccccccccccccchhhccccccccccccchhhhhhhhhhhcccc
Confidence            44444444432211   123444455555444432 223345677888888877664               23444444


Q ss_pred             cCcccCCccccCCCCCcCEEECcCCcccccC-CccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccc-ee
Q 048635          337 NLNGTLSDIIFPRNCGLHILDLSGNQLQGVV-PKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFS-GH  414 (562)
Q Consensus       337 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~  414 (562)
                      ...+ ++.. +..+++|+.+++.++...... ...+..+++++.++++.|.+....+..+..+++|++|++++|.+. ..
T Consensus       408 ~~~~-~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~  485 (635)
T 4g8a_A          408 GVIT-MSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF  485 (635)
T ss_dssp             SEEE-ECSC-CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred             cccc-cccc-ccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhccccccc
Confidence            4332 2222 566677777777776654432 345667777888888888777767777777788888888877643 23


Q ss_pred             cCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccC
Q 048635          415 ISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGN  494 (562)
Q Consensus       415 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~  494 (562)
                      .  +..+..+++|++|++++|++                       .+..|..|..+++|++|+|++|++++..|..|..
T Consensus       486 ~--~~~~~~l~~L~~L~Ls~N~L-----------------------~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~  540 (635)
T 4g8a_A          486 L--PDIFTELRNLTFLDLSQCQL-----------------------EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC  540 (635)
T ss_dssp             E--CSCCTTCTTCCEEECTTSCC-----------------------CEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTT
T ss_pred             C--chhhhhccccCEEECCCCcc-----------------------CCcChHHHcCCCCCCEEECCCCcCCCCChhHHhC
Confidence            3  56677778888888888877                       3444566777888888888888888777777888


Q ss_pred             CCCCCeeeCCCCcccccChhhhcCC-CCCCeEeCcCCccee
Q 048635          495 LKQIESLDLSMNNLSGKIPAQLASL-NFLSVLNLSYNNLVG  534 (562)
Q Consensus       495 l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~l~~n~l~~  534 (562)
                      +++|++|+|++|++++..|+.+..+ ++|++|++++|++.+
T Consensus       541 l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          541 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             CTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             CCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence            8888888888888887777777777 578888888888765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.4e-41  Score=351.03  Aligned_cols=425  Identities=21%  Similarity=0.221  Sum_probs=312.6

Q ss_pred             EEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCcc
Q 048635           41 IGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWR  120 (562)
Q Consensus        41 ~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  120 (562)
                      +++|++++ .++. +              |..+.  ++|++|++++|.+++..|..|.++++|++|++++|.+       
T Consensus         3 ~~l~ls~n-~l~~-i--------------p~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l-------   57 (520)
T 2z7x_B            3 FLVDRSKN-GLIH-V--------------PKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRI-------   57 (520)
T ss_dssp             CEEECTTS-CCSS-C--------------CCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCC-------
T ss_pred             ceEecCCC-Cccc-c--------------ccccc--ccccEEECCCCcccccChhhccccccccEEecCCCcc-------
Confidence            57899998 6663 3              44454  8999999999999977778899999999999999985       


Q ss_pred             ccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCc-cchhcccccCCCCcccccCCCCCC
Q 048635          121 LGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGP-INHHLANLRSHSQFFFVANLLNLT  199 (562)
Q Consensus       121 ~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~~~~~~~l~~l~~L~  199 (562)
                       ....|..|+++++|++|++++|+++.++.    .  .+++|++|++++|.+.+. .|..            ++++++|+
T Consensus        58 -~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~----~--~l~~L~~L~L~~N~l~~~~~p~~------------~~~l~~L~  118 (520)
T 2z7x_B           58 -QYLDISVFKFNQELEYLDLSHNKLVKISC----H--PTVNLKHLDLSFNAFDALPICKE------------FGNMSQLK  118 (520)
T ss_dssp             -CEEEGGGGTTCTTCCEEECCSSCCCEEEC----C--CCCCCSEEECCSSCCSSCCCCGG------------GGGCTTCC
T ss_pred             -CCcChHHhhcccCCCEEecCCCceeecCc----c--ccCCccEEeccCCccccccchhh------------hccCCcce
Confidence             35557889999999999999999987764    2  799999999999998773 4443            55667899


Q ss_pred             EEEccCCcCcccCChhhhCCCCc--cEEeccCCCC--CCCCCCCCCCCC-CCCEEEccCCcCCCCCC-CCCcCCCCCcEE
Q 048635          200 NLDLSQCDLRGKYPEKILQVSTL--ETLDLSYNPL--LQGSLPNFPKNS-YLQNLNLANTSFSGILP-DPIGILKYLTRV  273 (562)
Q Consensus       200 ~L~l~~~~~~~~~~~~l~~l~~L--~~L~L~~~~~--~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L  273 (562)
                      +|++++|.+++   ..+..+++|  +.|++++|.+  .......+..+. ....+++++|.+.+.++ ..+..+++|+.+
T Consensus       119 ~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L  195 (520)
T 2z7x_B          119 FLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS  195 (520)
T ss_dssp             EEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEEC
T ss_pred             EEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeec
Confidence            99999999985   456667777  9999999986  333334444433 23467788888766544 466789999999


Q ss_pred             EccCCc-------ccccCCccCCCCCCCCeeeCcCCcccccCC----CCCCCCCCCEEEcCCCCCcceEECCCCcCcccC
Q 048635          274 DLRSCS-------FTGPIPTSTTNLTQLFHVDFSSNHFSGPIP----SFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTL  342 (562)
Q Consensus       274 ~l~~n~-------l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~----~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~  342 (562)
                      ++++|.       +.+.++ .+..+++|+.|++++|.+.+...    .....++|++|++++|.++           |.+
T Consensus       196 ~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~-----------~~~  263 (520)
T 2z7x_B          196 NIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQ-----------GQL  263 (520)
T ss_dssp             CEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEE-----------SCC
T ss_pred             cccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeeccccc-----------Ccc
Confidence            999987       555555 68889999999999988765211    1112458999999888765           344


Q ss_pred             Ccccc----CCCCC--------------------------cCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcch
Q 048635          343 SDIIF----PRNCG--------------------------LHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFP  392 (562)
Q Consensus       343 ~~~~~----~~~~~--------------------------L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  392 (562)
                      |...+    ..++.                          |+.|++++|.+.+..  .+..+++|++|++++|++++..|
T Consensus       264 p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~  341 (520)
T 2z7x_B          264 DFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVF  341 (520)
T ss_dssp             CCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTT
T ss_pred             ccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhh
Confidence            44321    34444                          455555555443221  12466777777777777777666


Q ss_pred             HHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccc-cccCc
Q 048635          393 CWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATE-EMGRF  471 (562)
Q Consensus       393 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~l~~l  471 (562)
                      ..+..+++|++|++++|.+.+...++..+..+++|++|++++|++.+.                       +|. .+..+
T Consensus       342 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~-----------------------l~~~~~~~l  398 (520)
T 2z7x_B          342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD-----------------------EKKGDCSWT  398 (520)
T ss_dssp             TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC-----------------------GGGCSCCCC
T ss_pred             hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc-----------------------cccchhccC
Confidence            677777777777777777765332345566777777777777777432                       333 36778


Q ss_pred             CCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceecCCCC-CC---CCcccc
Q 048635          472 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTA-KH---VLPNFN  547 (562)
Q Consensus       472 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~-~~---~~~~l~  547 (562)
                      ++|++|++++|.+++..|..+.  ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +.   .+..++
T Consensus       399 ~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~  474 (520)
T 2z7x_B          399 KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIW  474 (520)
T ss_dssp             TTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             ccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEE
Confidence            9999999999999888877664  79999999999999 78888889999999999999999 56654 33   344555


Q ss_pred             chHHHH
Q 048635          548 LHRRQL  553 (562)
Q Consensus       548 ~~~~~l  553 (562)
                      +.+|.+
T Consensus       475 l~~N~~  480 (520)
T 2z7x_B          475 LHTNPW  480 (520)
T ss_dssp             CCSSCB
T ss_pred             CcCCCC
Confidence            555543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.2e-40  Score=351.69  Aligned_cols=443  Identities=19%  Similarity=0.204  Sum_probs=324.5

Q ss_pred             CCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCcccccc
Q 048635           77 TNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKAL  156 (562)
Q Consensus        77 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l  156 (562)
                      ++|++|++++|++++..|..|.++++|++|++++|.+        ....+..|.++++|++|++++|.++++++   ..+
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i--------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~   94 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI--------NTIEGDAFYSLGSLEHLDLSDNHLSSLSS---SWF   94 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCC--------CEECTTTTTTCTTCCEEECTTSCCCSCCH---HHH
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCc--------CccChhhccccccCCEEECCCCccCccCH---HHh
Confidence            7899999999999988889999999999999999985        35566789999999999999999998875   458


Q ss_pred             CCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCc-CcccCChhhhCCCCccEEeccCCCCCCC
Q 048635          157 SFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCD-LRGKYPEKILQVSTLETLDLSYNPLLQG  235 (562)
Q Consensus       157 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~L~~~~~~~~  235 (562)
                      ..+++|++|++++|.+.+...           +..+.++++|++|++++|. +....+..+..+++|++|++++|.+...
T Consensus        95 ~~l~~L~~L~Ls~n~l~~~~~-----------~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  163 (549)
T 2z81_A           95 GPLSSLKYLNLMGNPYQTLGV-----------TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY  163 (549)
T ss_dssp             TTCTTCCEEECTTCCCSSSCS-----------SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred             ccCCCCcEEECCCCcccccch-----------hhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence            899999999999999876321           2236677889999999998 4444446899999999999999988766


Q ss_pred             CCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccC--C-ccCCCCCCCCeeeCcCCcccccC----
Q 048635          236 SLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPI--P-TSTTNLTQLFHVDFSSNHFSGPI----  308 (562)
Q Consensus       236 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~-~~l~~l~~L~~L~l~~n~~~~~~----  308 (562)
                      ....+..+++|++|+++.|.+.......+..+++|++|++++|.+++..  + .....+++|+.|++++|.+.+..    
T Consensus       164 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l  243 (549)
T 2z81_A          164 QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL  243 (549)
T ss_dssp             CTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHH
T ss_pred             ChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHH
Confidence            6778888999999999999876432223356899999999999998642  1 23345789999999999887532    


Q ss_pred             -CCCCCCCCCCEEEcCCCCCcce-------------------EECCCCcCccc-----CCccccCCCCCcCEEECcCCcc
Q 048635          309 -PSFHESRNLNYLDLSSNNLNGV-------------------LNLGRNNLNGT-----LSDIIFPRNCGLHILDLSGNQL  363 (562)
Q Consensus       309 -~~~~~~~~L~~L~l~~n~l~~~-------------------l~l~~~~~~~~-----~~~~~~~~~~~L~~L~L~~n~l  363 (562)
                       ..+..+++|+.+++++|.+...                   +.+..+.+...     ++. .+....+|+.|++++|.+
T Consensus       244 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~-~~~~~~~L~~L~l~~n~l  322 (549)
T 2z81_A          244 LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST-VYSLLEKVKRITVENSKV  322 (549)
T ss_dssp             HGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCH-HHHHSTTCCEEEEESSCC
T ss_pred             HHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchh-hhhhcccceEEEeccCcc
Confidence             2236678999999999876532                   22222211100     000 012234688888888887


Q ss_pred             cccCCccC-CCCCCCCEEEcccCCCCCcchH---HhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCC
Q 048635          364 QGVVPKSL-ANCNMLQVLDFRNNHISDNFPC---WLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGG  439 (562)
Q Consensus       364 ~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~  439 (562)
                      . .+|..+ ..+++|++|++++|++.+..|.   .++.+++|++|++++|.+.+.......+..+++|++|++++|+++ 
T Consensus       323 ~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-  400 (549)
T 2z81_A          323 F-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-  400 (549)
T ss_dssp             C-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-
T ss_pred             c-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-
Confidence            7 455544 5688899999999988876543   367788899999999888754311234677888999999999886 


Q ss_pred             cCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCC
Q 048635          440 RLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASL  519 (562)
Q Consensus       440 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l  519 (562)
                      .+|..+.....++++....+-...++..+.  ++|++|++++|++++.+    ..+++|++|++++|+++ .+|. ...+
T Consensus       401 ~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~--~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l  472 (549)
T 2z81_A          401 PMPDSCQWPEKMRFLNLSSTGIRVVKTCIP--QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLF  472 (549)
T ss_dssp             CCCSCCCCCTTCCEEECTTSCCSCCCTTSC--TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGC
T ss_pred             cCChhhcccccccEEECCCCCcccccchhc--CCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccC
Confidence            455433322234433332222223333322  57888888888877532    47899999999999999 6776 4678


Q ss_pred             CCCCeEeCcCCcceecCCCCCC---CCccccchHHH
Q 048635          520 NFLSVLNLSYNNLVGQIPTAKH---VLPNFNLHRRQ  552 (562)
Q Consensus       520 ~~L~~L~l~~n~l~~~~p~~~~---~~~~l~~~~~~  552 (562)
                      ++|++|++++|++++.+|..+.   .+..+++.+|.
T Consensus       473 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~  508 (549)
T 2z81_A          473 PVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP  508 (549)
T ss_dssp             TTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred             ccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence            9999999999999988876544   44455555554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.4e-39  Score=335.13  Aligned_cols=369  Identities=21%  Similarity=0.230  Sum_probs=232.6

Q ss_pred             CCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCcccccc
Q 048635           77 TNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKAL  156 (562)
Q Consensus        77 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l  156 (562)
                      ++|++|++++|.+++..|..|.++++|++|++++|.+.       ....+..|.++++|++|++++|.++.+.+   ..+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~-------~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~   99 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG-------LVIRNNTFRGLSSLIILKLDYNQFLQLET---GAF   99 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTT-------CEECTTTTTTCTTCCEEECTTCTTCEECT---TTT
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCccc-------ceECcccccccccCCEEeCCCCccCccCh---hhc
Confidence            67999999999999888888999999999999999742       12335678889999999999998887754   567


Q ss_pred             CCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChh-hhCCCCccEEeccCCCCCCC
Q 048635          157 SFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEK-ILQVSTLETLDLSYNPLLQG  235 (562)
Q Consensus       157 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~  235 (562)
                      ..+++|++|++++|.+.+..+..          ..+..+++|++|++++|.+++..|.. +..+++|++|++++|.+...
T Consensus       100 ~~l~~L~~L~L~~n~l~~~~~~~----------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  169 (455)
T 3v47_A          100 NGLANLEVLTLTQCNLDGAVLSG----------NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI  169 (455)
T ss_dssp             TTCTTCCEEECTTSCCBTHHHHS----------STTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred             cCcccCCEEeCCCCCCCccccCc----------ccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence            88899999999999887644332          12556778899999988888776665 77888888888888876555


Q ss_pred             CCCCCCCC--CCCCEEEccCCcCCCCCCCCC--------cCCCCCcEEEccCCcccccCCccCCCC---CCCCeeeCcCC
Q 048635          236 SLPNFPKN--SYLQNLNLANTSFSGILPDPI--------GILKYLTRVDLRSCSFTGPIPTSTTNL---TQLFHVDFSSN  302 (562)
Q Consensus       236 ~~~~~~~~--~~L~~L~L~~n~l~~~~~~~~--------~~~~~L~~L~l~~n~l~~~~~~~l~~l---~~L~~L~l~~n  302 (562)
                      ....+..+  .+++.|++++|.+.+..+..+        ..+++|++|++++|.+++..+..+...   ++|+.|++++|
T Consensus       170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~  249 (455)
T 3v47_A          170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS  249 (455)
T ss_dssp             CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred             ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence            44455443  567777777777765443322        244566666666666665444433322   45555555555


Q ss_pred             cccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccC--CCCCcCEEECcCCcccccCCccCCCCCCCCEE
Q 048635          303 HFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFP--RNCGLHILDLSGNQLQGVVPKSLANCNMLQVL  380 (562)
Q Consensus       303 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  380 (562)
                      ...+.......+..+                         ....+.  ..++|+.|++++|.+.+..+..+..+++|++|
T Consensus       250 ~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  304 (455)
T 3v47_A          250 YNMGSSFGHTNFKDP-------------------------DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQL  304 (455)
T ss_dssp             TTTSCCTTCCSSCCC-------------------------CTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             cccccccchhhhccC-------------------------cccccccccccCceEEEecCccccccchhhcccCCCCCEE
Confidence            443221111000000                         000011  11234555555555544444444444455555


Q ss_pred             EcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCC
Q 048635          381 DFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRC  460 (562)
Q Consensus       381 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~  460 (562)
                      ++++|++.+..+.                          .+..+++|++|++++|.++                      
T Consensus       305 ~Ls~n~l~~~~~~--------------------------~~~~l~~L~~L~Ls~N~l~----------------------  336 (455)
T 3v47_A          305 TLAQNEINKIDDN--------------------------AFWGLTHLLKLNLSQNFLG----------------------  336 (455)
T ss_dssp             ECTTSCCCEECTT--------------------------TTTTCTTCCEEECCSSCCC----------------------
T ss_pred             ECCCCcccccChh--------------------------HhcCcccCCEEECCCCccC----------------------
Confidence            5555544444444                          4444455555555555441                      


Q ss_pred             cccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceecCCCC
Q 048635          461 RDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTA  539 (562)
Q Consensus       461 ~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~  539 (562)
                       +..+..+..+++|++|++++|.+++..|..|..+++|++|++++|++++..+..+..+++|++|++++|++++..|..
T Consensus       337 -~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  414 (455)
T 3v47_A          337 -SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  414 (455)
T ss_dssp             -EECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             -CcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence             223444566667777777777776666666777777777777777777655555666777777777777777666643

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.2e-38  Score=336.47  Aligned_cols=425  Identities=18%  Similarity=0.179  Sum_probs=296.5

Q ss_pred             eCCCCCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCC
Q 048635           34 CDEAGHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREP  113 (562)
Q Consensus        34 c~~~~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~  113 (562)
                      |......+++|++++ .++. +              |..+.  ++|++|++++|.+++..|.+|.++++|++|++++|.+
T Consensus        27 ~~~~~~~~~l~ls~~-~L~~-i--------------p~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l   88 (562)
T 3a79_B           27 PFSNELESMVDYSNR-NLTH-V--------------PKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI   88 (562)
T ss_dssp             ------CCEEECTTS-CCCS-C--------------CTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCC
T ss_pred             ccccCCCcEEEcCCC-CCcc-C--------------CCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCC
Confidence            444455689999999 6664 3              33443  8999999999999988788999999999999999985


Q ss_pred             CCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCcc-chhcccccCCCCcccc
Q 048635          114 ISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPI-NHHLANLRSHSQFFFV  192 (562)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~~~~~~~l  192 (562)
                              ....+..|.++++|++|++++|.++.++.    .  .+++|++|++++|.+.+.. |..            +
T Consensus        89 --------~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~----~--~l~~L~~L~Ls~N~l~~l~~p~~------------~  142 (562)
T 3a79_B           89 --------RSLDFHVFLFNQDLEYLDVSHNRLQNISC----C--PMASLRHLDLSFNDFDVLPVCKE------------F  142 (562)
T ss_dssp             --------CEECTTTTTTCTTCCEEECTTSCCCEECS----C--CCTTCSEEECCSSCCSBCCCCGG------------G
T ss_pred             --------CcCCHHHhCCCCCCCEEECCCCcCCccCc----c--ccccCCEEECCCCCccccCchHh------------h
Confidence                    35567889999999999999999998764    2  7999999999999987742 333            5


Q ss_pred             cCCCCCCEEEccCCcCcccCChhhhCCCCc--cEEeccCCCC--CCCCCCCCCCCC-CCCEEEccCCcCCCCCCC-CCcC
Q 048635          193 ANLLNLTNLDLSQCDLRGKYPEKILQVSTL--ETLDLSYNPL--LQGSLPNFPKNS-YLQNLNLANTSFSGILPD-PIGI  266 (562)
Q Consensus       193 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~L~~~~~--~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~-~~~~  266 (562)
                      +++++|++|++++|.+++.   .+..+++|  +.|++++|.+  .......+..+. ..-.+++++|.+.+.++. .+..
T Consensus       143 ~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~  219 (562)
T 3a79_B          143 GNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNA  219 (562)
T ss_dssp             GGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESS
T ss_pred             cccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccc
Confidence            6677899999999999854   34445555  9999999976  333333332221 011334444444332221 2223


Q ss_pred             CCCCcEEEccCC----------------------------ccccc----CCccCCCCCCCCeeeCcCCcccccCCC-C--
Q 048635          267 LKYLTRVDLRSC----------------------------SFTGP----IPTSTTNLTQLFHVDFSSNHFSGPIPS-F--  311 (562)
Q Consensus       267 ~~~L~~L~l~~n----------------------------~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~-~--  311 (562)
                      +++|+.+++++|                            .+.+.    .+.. ...++|++|++++|.+.+..|. +  
T Consensus       220 l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~  298 (562)
T 3a79_B          220 LGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFT  298 (562)
T ss_dssp             EEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCC
T ss_pred             cceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhh
Confidence            334444444433                            22110    0000 1123666666666666644332 1  


Q ss_pred             ---CCCCCCCEEEcCCCCC---------------cceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCC
Q 048635          312 ---HESRNLNYLDLSSNNL---------------NGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLAN  373 (562)
Q Consensus       312 ---~~~~~L~~L~l~~n~l---------------~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  373 (562)
                         ..++.|+.+++..+.+               .+.++++++.+. .++  ....+++|+.|++++|.+++..|..+..
T Consensus       299 ~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~-~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~  375 (562)
T 3a79_B          299 YSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI-HMV--CPPSPSSFTFLNFTQNVFTDSVFQGCST  375 (562)
T ss_dssp             CCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC-CCC--CCSSCCCCCEEECCSSCCCTTTTTTCCS
T ss_pred             cccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc-ccc--CccCCCCceEEECCCCccccchhhhhcc
Confidence               2233333333333322               123344444332 111  1267788999999999999888999999


Q ss_pred             CCCCCEEEcccCCCCCc--chHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhh
Q 048635          374 CNMLQVLDFRNNHISDN--FPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGM  451 (562)
Q Consensus       374 l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l  451 (562)
                      +++|++|++++|++++.  .|..+..+++|++|++++|.+.+..+ ...+..+++|++|++++|++++.           
T Consensus       376 l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~-----------  443 (562)
T 3a79_B          376 LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY-DRTCAWAESILVLNLSSNMLTGS-----------  443 (562)
T ss_dssp             CSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCS-SCCCCCCTTCCEEECCSSCCCGG-----------
T ss_pred             cCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccC-hhhhcCcccCCEEECCCCCCCcc-----------
Confidence            99999999999999873  35678899999999999999986221 34577889999999999998533           


Q ss_pred             hhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhh-hcCCCCCCeEeCcCC
Q 048635          452 RYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQ-LASLNFLSVLNLSYN  530 (562)
Q Consensus       452 ~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~l~~n  530 (562)
                                  .+..+.  ++|+.|++++|.++ .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|
T Consensus       444 ------------~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N  507 (562)
T 3a79_B          444 ------------VFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN  507 (562)
T ss_dssp             ------------GGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSC
T ss_pred             ------------hhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCC
Confidence                        333333  68999999999999 77877779999999999999999 45655 899999999999999


Q ss_pred             cceecCC
Q 048635          531 NLVGQIP  537 (562)
Q Consensus       531 ~l~~~~p  537 (562)
                      ++.+..|
T Consensus       508 ~~~c~c~  514 (562)
T 3a79_B          508 PWDCTCP  514 (562)
T ss_dssp             CBCCCHH
T ss_pred             CcCCCcc
Confidence            9987655

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=5.7e-38  Score=337.31  Aligned_cols=446  Identities=21%  Similarity=0.177  Sum_probs=292.2

Q ss_pred             CCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCcccccc
Q 048635           77 TNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKAL  156 (562)
Q Consensus        77 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l  156 (562)
                      +++++|||++|+|++..+.+|.++++|++|+|++|.+        ....+.+|.++++|++|+|++|+++.+++   ..+
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i--------~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~---~~f  120 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--------QTIEDGAYQSLSHLSTLILTGNPIQSLAL---GAF  120 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC--------CEECTTTTTTCTTCCEEECTTCCCCEECG---GGG
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC--------CCcChhHhcCCCCCCEEEccCCcCCCCCH---HHh
Confidence            4799999999999988888999999999999999985        35557789999999999999999998875   568


Q ss_pred             CCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcc-cCChhhhCCCCccEEeccCCCCCCC
Q 048635          157 SFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRG-KYPEKILQVSTLETLDLSYNPLLQG  235 (562)
Q Consensus       157 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~~~~~~~  235 (562)
                      .++++|++|++++|.+++..+..            ++++++|++|++++|.++. ..|..+..+++|++|++++|.+...
T Consensus       121 ~~L~~L~~L~Ls~N~l~~l~~~~------------~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~  188 (635)
T 4g8a_A          121 SGLSSLQKLVAVETNLASLENFP------------IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  188 (635)
T ss_dssp             TTCTTCCEEECTTSCCCCSTTCC------------CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             cCCCCCCEEECCCCcCCCCChhh------------hhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence            89999999999999998765433            5667789999999999975 4578888999999999999987665


Q ss_pred             CCCCCCCCC----CCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCccccc----------------------------
Q 048635          236 SLPNFPKNS----YLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGP----------------------------  283 (562)
Q Consensus       236 ~~~~~~~~~----~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~----------------------------  283 (562)
                      ....+..+.    ....++++.|.+....+..+. ...++.+++.+|.....                            
T Consensus       189 ~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l  267 (635)
T 4g8a_A          189 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL  267 (635)
T ss_dssp             CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred             ccccccchhhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCccccccccccccccccccc
Confidence            554544433    345788999988755444332 23345555544422100                            


Q ss_pred             ------------------------------CCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCc-----
Q 048635          284 ------------------------------IPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLN-----  328 (562)
Q Consensus       284 ------------------------------~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~-----  328 (562)
                                                    ....+....+++.+.+.++.+... ..+.....++.|++.+|.+.     
T Consensus       268 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~  346 (635)
T 4g8a_A          268 EKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV-KDFSYNFGWQHLELVNCKFGQFPTL  346 (635)
T ss_dssp             SCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC-GGGGSCCCCSEEEEESCEESSCCCC
T ss_pred             ccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc-cccccchhhhhhhcccccccCcCcc
Confidence                                          001111223344444444433321 12233445666666555433     


Q ss_pred             -----ceEECCCCcCcccCCccccCCCCCcCEEECcCCcccc--cCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCC
Q 048635          329 -----GVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQG--VVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSL  401 (562)
Q Consensus       329 -----~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  401 (562)
                           ..+.+..+.......   ...+++|+.+++++|.+..  ..+..+..+.+|+.+++..+.... .+..+..+++|
T Consensus       347 ~l~~L~~l~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L  422 (635)
T 4g8a_A          347 KLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQL  422 (635)
T ss_dssp             BCTTCCEEEEESCCSCCBCC---CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTC
T ss_pred             cchhhhhcccccccCCCCcc---cccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccc
Confidence                 122222232221111   2345567777777766542  223333444555555555554433 22234445555


Q ss_pred             CEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhh-hC-CCcccccccccCcCCCCEEeC
Q 048635          402 QVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQAT-NK-RCRDQATEEMGRFKSLYALNM  479 (562)
Q Consensus       402 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~-~~-~~~~~~~~~l~~l~~L~~L~L  479 (562)
                      +.+++..|....... ...+..+++++.++++.|.+.+..+..+.....+..+.. .+ ...+..|..+..+++|++|+|
T Consensus       423 ~~l~l~~~~~~~~~~-~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~L  501 (635)
T 4g8a_A          423 EHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL  501 (635)
T ss_dssp             CEEECTTSEEESTTS-SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred             cchhhhhcccccccc-ccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEEC
Confidence            555555444432221 223344455555555555554443332222222222111 11 123456778899999999999


Q ss_pred             cCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceecCCCCCC----CCccccchHHH
Q 048635          480 SHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKH----VLPNFNLHRRQ  552 (562)
Q Consensus       480 s~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~----~~~~l~~~~~~  552 (562)
                      ++|++++..|..|.++++|++|+|++|++++..|..+..+++|++|++++|++++..|..+.    .+..+++++|.
T Consensus       502 s~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          502 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  578 (635)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred             CCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence            99999988899999999999999999999998899999999999999999999999998764    45556666544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.2e-37  Score=318.00  Aligned_cols=387  Identities=20%  Similarity=0.227  Sum_probs=266.1

Q ss_pred             CCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCccCcccCCccCCCCCCC-------------c
Q 048635           38 GHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRL-------------V  104 (562)
Q Consensus        38 ~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L-------------~  104 (562)
                      .++++++++++ .+ +.+              |.+|+++++|++|++++|.+++.+|.+++.+++|             +
T Consensus        11 ~~L~~L~l~~n-~l-~~i--------------P~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~   74 (454)
T 1jl5_A           11 TFLQEPLRHSS-NL-TEM--------------PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAH   74 (454)
T ss_dssp             ---------------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCS
T ss_pred             ccchhhhcccC-ch-hhC--------------ChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCC
Confidence            67889999998 66 666              7789999999999999999999999999998875             9


Q ss_pred             EEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhccccc
Q 048635          105 TLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLR  184 (562)
Q Consensus       105 ~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~  184 (562)
                      +|++++|.+.         .+|.   -.++|++|++++|.++.++.       ..++|++|++++|.+.+...       
T Consensus        75 ~L~l~~~~l~---------~lp~---~~~~L~~L~l~~n~l~~lp~-------~~~~L~~L~l~~n~l~~l~~-------  128 (454)
T 1jl5_A           75 ELELNNLGLS---------SLPE---LPPHLESLVASCNSLTELPE-------LPQSLKSLLVDNNNLKALSD-------  128 (454)
T ss_dssp             EEECTTSCCS---------CCCS---CCTTCSEEECCSSCCSSCCC-------CCTTCCEEECCSSCCSCCCS-------
T ss_pred             EEEecCCccc---------cCCC---CcCCCCEEEccCCcCCcccc-------ccCCCcEEECCCCccCcccC-------
Confidence            9999999853         1222   13789999999999988653       24789999999998876321       


Q ss_pred             CCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCC
Q 048635          185 SHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPI  264 (562)
Q Consensus       185 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  264 (562)
                               ..++|++|++++|.+++ +| .+..+++|++|++++|.+..  ++..  .++|++|++++|.+++ +| .+
T Consensus       129 ---------~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~--lp~~--~~~L~~L~L~~n~l~~-l~-~~  191 (454)
T 1jl5_A          129 ---------LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK--LPDL--PPSLEFIAAGNNQLEE-LP-EL  191 (454)
T ss_dssp             ---------CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC--CCCC--CTTCCEEECCSSCCSS-CC-CC
T ss_pred             ---------CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc--cCCC--cccccEEECcCCcCCc-Cc-cc
Confidence                     01579999999999985 66 58999999999999998753  3332  3589999999999986 45 68


Q ss_pred             cCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCc
Q 048635          265 GILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSD  344 (562)
Q Consensus       265 ~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~  344 (562)
                      ..+++|++|++++|.+++ +|...   ++|++|++++|.+. ..+.+..+++|++|++++|.++            .+|.
T Consensus       192 ~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~------------~l~~  254 (454)
T 1jl5_A          192 QNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLK------------TLPD  254 (454)
T ss_dssp             TTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCS------------SCCS
T ss_pred             cCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-cccccCCCCCCCEEECCCCcCC------------cccc
Confidence            999999999999999985 44332   58999999999998 4556889999999999999886            3443


Q ss_pred             cccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCC
Q 048635          345 IIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSW  424 (562)
Q Consensus       345 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~  424 (562)
                      .    .++|+.|++++|.+++ +|..   .++|++|++++|++++. +.   -.++|++|++++|.+.+....      .
T Consensus       255 ~----~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~i~~~------~  316 (454)
T 1jl5_A          255 L----PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRSLCDL------P  316 (454)
T ss_dssp             C----CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSEECCC------C
T ss_pred             c----ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCcccCC------c
Confidence            2    3679999999999985 4443   47899999999999872 21   136899999999998864321      2


Q ss_pred             CCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCC
Q 048635          425 PLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLS  504 (562)
Q Consensus       425 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls  504 (562)
                      ++|++|++++|++.+                        +|..   +++|+.|++++|.++ .+|.   .+++|++|+++
T Consensus       317 ~~L~~L~Ls~N~l~~------------------------lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~  365 (454)
T 1jl5_A          317 PSLEELNVSNNKLIE------------------------LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVE  365 (454)
T ss_dssp             TTCCEEECCSSCCSC------------------------CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECC
T ss_pred             CcCCEEECCCCcccc------------------------cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECC
Confidence            589999999999843                        2322   478999999999998 5665   47899999999


Q ss_pred             CCcccc--cChhhhcCC-------------CCCCeEeCcCCccee--cCCCCCCCCccccchHHH
Q 048635          505 MNNLSG--KIPAQLASL-------------NFLSVLNLSYNNLVG--QIPTAKHVLPNFNLHRRQ  552 (562)
Q Consensus       505 ~n~l~~--~~p~~l~~l-------------~~L~~L~l~~n~l~~--~~p~~~~~~~~l~~~~~~  552 (562)
                      +|++++  .+|..+..+             ++|++|++++|++++  .+|..   +..+.+..+.
T Consensus       366 ~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~s---l~~L~~~~~~  427 (454)
T 1jl5_A          366 YNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES---VEDLRMNSER  427 (454)
T ss_dssp             SSCCSSCCCCCTTCCEEECCC--------------------------------------------
T ss_pred             CCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhh---HhheeCcCcc
Confidence            999998  678888777             889999999999987  66644   4444444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.8e-37  Score=317.93  Aligned_cols=340  Identities=19%  Similarity=0.176  Sum_probs=258.7

Q ss_pred             CCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCccCccc-CCccCCCCCCCcEEeCCCCCCCCC
Q 048635           38 GHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGE-IPTEISSLPRLVTLDLSSREPISG  116 (562)
Q Consensus        38 ~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~~~~~  116 (562)
                      .++++||++++ .+....              +..|.++++|++|++++|.+.+. .+..|.++++|++|++++|.+   
T Consensus        30 ~~l~~L~Ls~n-~i~~~~--------------~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l---   91 (455)
T 3v47_A           30 AHVNYVDLSLN-SIAELN--------------ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF---   91 (455)
T ss_dssp             TTCCEEECCSS-CCCEEC--------------TTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT---
T ss_pred             CccCEEEecCC-ccCcCC--------------hhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc---
Confidence            57999999999 777665              66899999999999999998744 467799999999999999985   


Q ss_pred             CCccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCC
Q 048635          117 FSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLL  196 (562)
Q Consensus       117 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~  196 (562)
                           ....+..|+++++|++|++++|.+++..+. ...+..+++|++|++++|.+.+..|..+           +.+++
T Consensus        92 -----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----------~~~l~  154 (455)
T 3v47_A           92 -----LQLETGAFNGLANLEVLTLTQCNLDGAVLS-GNFFKPLTSLEMLVLRDNNIKKIQPASF-----------FLNMR  154 (455)
T ss_dssp             -----CEECTTTTTTCTTCCEEECTTSCCBTHHHH-SSTTTTCTTCCEEECCSSBCCSCCCCGG-----------GGGCT
T ss_pred             -----CccChhhccCcccCCEEeCCCCCCCccccC-cccccCcccCCEEECCCCccCccCcccc-----------cCCCC
Confidence                 355678899999999999999998763221 1337889999999999999988765432           55677


Q ss_pred             CCCEEEccCCcCcccCChhhhCC--CCccEEeccCCCCCCCCCCC--------CCCCCCCCEEEccCCcCCCCCCCCCcC
Q 048635          197 NLTNLDLSQCDLRGKYPEKILQV--STLETLDLSYNPLLQGSLPN--------FPKNSYLQNLNLANTSFSGILPDPIGI  266 (562)
Q Consensus       197 ~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~L~~~~~~~~~~~~--------~~~~~~L~~L~L~~n~l~~~~~~~~~~  266 (562)
                      +|++|++++|.+++..+..+..+  .+|+.|++++|.+.......        +..+++|++|++++|.+++..|..+..
T Consensus       155 ~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  234 (455)
T 3v47_A          155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD  234 (455)
T ss_dssp             TCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred             cccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhc
Confidence            89999999999998888888765  78999999999875544332        234688999999999998766655543


Q ss_pred             ---CCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCC
Q 048635          267 ---LKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLS  343 (562)
Q Consensus       267 ---~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~  343 (562)
                         .++|+.|++++|...+.... ...++.+...     .+.     -...++|++|++++|.+.            .++
T Consensus       235 ~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~-----~~~-----~~~~~~L~~L~l~~n~l~------------~~~  291 (455)
T 3v47_A          235 AIAGTKIQSLILSNSYNMGSSFG-HTNFKDPDNF-----TFK-----GLEASGVKTCDLSKSKIF------------ALL  291 (455)
T ss_dssp             HTTTCCEEEEECTTCTTTSCCTT-CCSSCCCCTT-----TTG-----GGTTSCCCEEECCSSCCC------------EEC
T ss_pred             cccccceeeEeeccccccccccc-hhhhccCccc-----ccc-----cccccCceEEEecCcccc------------ccc
Confidence               37899999999987643211 1111111111     010     013467888888888776            333


Q ss_pred             ccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCC
Q 048635          344 DIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVS  423 (562)
Q Consensus       344 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~  423 (562)
                      ...+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..+..+..+++|++|++++|.+.+..  +..+..
T Consensus       292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~  369 (455)
T 3v47_A          292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALG--DQSFLG  369 (455)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEEC--TTTTTT
T ss_pred             hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccC--hhhccc
Confidence            333888889999999999999888889999999999999999998877888888899999999988887654  444455


Q ss_pred             CCCCCEEEcCCCcC
Q 048635          424 WPLLQIVDFASNKF  437 (562)
Q Consensus       424 ~~~L~~L~l~~n~~  437 (562)
                      +++|++|++++|++
T Consensus       370 l~~L~~L~L~~N~l  383 (455)
T 3v47_A          370 LPNLKELALDTNQL  383 (455)
T ss_dssp             CTTCCEEECCSSCC
T ss_pred             cccccEEECCCCcc
Confidence            55555555555544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=5.5e-37  Score=323.86  Aligned_cols=391  Identities=21%  Similarity=0.212  Sum_probs=278.5

Q ss_pred             CCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCC
Q 048635           38 GHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGF  117 (562)
Q Consensus        38 ~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~  117 (562)
                      .++++||++++ .+.+..              +..|.++++|++|++++|.+++..|++|.++++|++|++++|.+.   
T Consensus        52 ~~L~~L~Ls~N-~i~~~~--------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~---  113 (562)
T 3a79_B           52 PRTKALSLSQN-SISELR--------------MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ---  113 (562)
T ss_dssp             TTCCEEECCSS-CCCCCC--------------GGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC---
T ss_pred             CCcCEEECCCC-CccccC--------------hhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC---
Confidence            67999999999 666554              568999999999999999999888999999999999999999853   


Q ss_pred             CccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCC
Q 048635          118 SWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLN  197 (562)
Q Consensus       118 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~  197 (562)
                            .+|..  .+++|++|++++|.++.++.  +..+..+++|++|++++|.+.+..   +..         +..+ +
T Consensus       114 ------~lp~~--~l~~L~~L~Ls~N~l~~l~~--p~~~~~l~~L~~L~L~~n~l~~~~---~~~---------l~~L-~  170 (562)
T 3a79_B          114 ------NISCC--PMASLRHLDLSFNDFDVLPV--CKEFGNLTKLTFLGLSAAKFRQLD---LLP---------VAHL-H  170 (562)
T ss_dssp             ------EECSC--CCTTCSEEECCSSCCSBCCC--CGGGGGCTTCCEEEEECSBCCTTT---TGG---------GTTS-C
T ss_pred             ------ccCcc--ccccCCEEECCCCCccccCc--hHhhcccCcccEEecCCCccccCc---hhh---------hhhc-e
Confidence                  33433  79999999999999988653  257889999999999999987632   221         2222 3


Q ss_pred             CCEEEccCCcC--cccCChhhhCCCC-ccEEeccCCCCCCCCCC-CCCCCC-----------------------------
Q 048635          198 LTNLDLSQCDL--RGKYPEKILQVST-LETLDLSYNPLLQGSLP-NFPKNS-----------------------------  244 (562)
Q Consensus       198 L~~L~l~~~~~--~~~~~~~l~~l~~-L~~L~L~~~~~~~~~~~-~~~~~~-----------------------------  244 (562)
                      |++|++++|.+  ++..|..+..+.. .-.++++.|.+...... .+..++                             
T Consensus       171 L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~  250 (562)
T 3a79_B          171 LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPT  250 (562)
T ss_dssp             EEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSS
T ss_pred             eeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCc
Confidence            49999999998  7666766655430 11223333332211100 111223                             


Q ss_pred             --------------------------CCCEEEccCCcCCCCCCCCC-----cCCCCCcEEEccCCcccccCC-ccCC---
Q 048635          245 --------------------------YLQNLNLANTSFSGILPDPI-----GILKYLTRVDLRSCSFTGPIP-TSTT---  289 (562)
Q Consensus       245 --------------------------~L~~L~L~~n~l~~~~~~~~-----~~~~~L~~L~l~~n~l~~~~~-~~l~---  289 (562)
                                                +|++|++++|.+++.+|..+     ..++.|+.+++..+.+  .+| ..+.   
T Consensus       251 L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~  328 (562)
T 3a79_B          251 LLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVF  328 (562)
T ss_dssp             CEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHH
T ss_pred             ceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhh
Confidence                                      34444444444443344333     2333333333333332  111 0111   


Q ss_pred             CCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCccccc--C
Q 048635          290 NLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGV--V  367 (562)
Q Consensus       290 ~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~--~  367 (562)
                      ...+|++|++++|.+.... ....+++|++|++++|.++           +.+|.. +..+++|+.|++++|++++.  .
T Consensus       329 ~~~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~l~~n~l~-----------~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~  395 (562)
T 3a79_B          329 AEMNIKMLSISDTPFIHMV-CPPSPSSFTFLNFTQNVFT-----------DSVFQG-CSTLKRLQTLILQRNGLKNFFKV  395 (562)
T ss_dssp             HTCCCSEEEEESSCCCCCC-CCSSCCCCCEEECCSSCCC-----------TTTTTT-CCSCSSCCEEECCSSCCCBTTHH
T ss_pred             ccCcceEEEccCCCccccc-CccCCCCceEEECCCCccc-----------cchhhh-hcccCCCCEEECCCCCcCCcccc
Confidence            1145777777777664321 2256778888888887765           445555 88899999999999999863  3


Q ss_pred             CccCCCCCCCCEEEcccCCCCCcch-HHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhh
Q 048635          368 PKSLANCNMLQVLDFRNNHISDNFP-CWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCS  446 (562)
Q Consensus       368 ~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  446 (562)
                      |..+..+++|++|++++|++.+.+| ..+..+++|++|++++|++++..  +..+.  ++|++|++++|+++        
T Consensus       396 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~--~~L~~L~L~~N~l~--------  463 (562)
T 3a79_B          396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV--FRCLP--PKVKVLDLHNNRIM--------  463 (562)
T ss_dssp             HHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG--GSSCC--TTCSEEECCSSCCC--------
T ss_pred             hhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcch--hhhhc--CcCCEEECCCCcCc--------
Confidence            5678999999999999999998444 45888999999999999997644  44333  79999999999983        


Q ss_pred             hhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChh-ccCCCCCCeeeCCCCcccccCh
Q 048635          447 TTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSS-FGNLKQIESLDLSMNNLSGKIP  513 (562)
Q Consensus       447 ~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p  513 (562)
                                      .+|..+..+++|++|++++|+++ .+|.. |..+++|+.|++++|.+.+..+
T Consensus       464 ----------------~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          464 ----------------SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             ----------------CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             ----------------ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence                            56666778999999999999999 56655 9999999999999999987554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1e-35  Score=306.63  Aligned_cols=346  Identities=24%  Similarity=0.335  Sum_probs=255.6

Q ss_pred             CCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCcccc
Q 048635           75 NLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCK  154 (562)
Q Consensus        75 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~  154 (562)
                      .+++|+.|+++++.+. .+|. +..+++|++|++++|.+.        .. +. +.++++|++|++++|.+..++     
T Consensus        44 ~l~~l~~L~l~~~~i~-~l~~-~~~l~~L~~L~Ls~n~l~--------~~-~~-~~~l~~L~~L~l~~n~l~~~~-----  106 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLT--------DI-TP-LKNLTKLVDILMNNNQIADIT-----  106 (466)
T ss_dssp             HHHTCCEEECCSSCCC-CCTT-GGGCTTCCEEECCSSCCC--------CC-GG-GTTCTTCCEEECCSSCCCCCG-----
T ss_pred             HhccccEEecCCCCCc-cCcc-hhhhcCCCEEECCCCccC--------Cc-hh-hhccccCCEEECCCCccccCh-----
Confidence            4678999999999998 4564 888999999999999853        22 23 889999999999999998775     


Q ss_pred             ccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCC
Q 048635          155 ALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQ  234 (562)
Q Consensus       155 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~  234 (562)
                      .+..+++|++|++++|.+.+..+              +.++++|++|++++|.+.+ .+ .+..+++|+.|+++++ +  
T Consensus       107 ~~~~l~~L~~L~L~~n~l~~~~~--------------~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~~-~--  167 (466)
T 1o6v_A          107 PLANLTNLTGLTLFNNQITDIDP--------------LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGNQ-V--  167 (466)
T ss_dssp             GGTTCTTCCEEECCSSCCCCCGG--------------GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEES-C--
T ss_pred             hhcCCCCCCEEECCCCCCCCChH--------------HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCCc-c--
Confidence            27889999999999998876432              5667789999999998874 33 4788899999998743 3  


Q ss_pred             CCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCC
Q 048635          235 GSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHES  314 (562)
Q Consensus       235 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  314 (562)
                      .....+..+++|+.|++++|.+++.  ..+..+++|++|++++|.+.+..+  ++.+++|++|++++|.+.+. +.+..+
T Consensus       168 ~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l  242 (466)
T 1o6v_A          168 TDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-GTLASL  242 (466)
T ss_dssp             CCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGC
T ss_pred             cCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-hhhhcC
Confidence            2334477788888888888887754  347778888888888888875444  66678888888888887643 456677


Q ss_pred             CCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHH
Q 048635          315 RNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCW  394 (562)
Q Consensus       315 ~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  394 (562)
                      ++|++|++++|.+.            .++.  +..+++|+.|++++|.+++..+  +..+++|++|++++|++.+..+  
T Consensus       243 ~~L~~L~l~~n~l~------------~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--  304 (466)
T 1o6v_A          243 TNLTDLDLANNQIS------------NLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--  304 (466)
T ss_dssp             TTCSEEECCSSCCC------------CCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--
T ss_pred             CCCCEEECCCCccc------------cchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--
Confidence            77888888777665            2222  5666777778887777775433  6677777777777777777444  


Q ss_pred             hhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCC
Q 048635          395 LRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSL  474 (562)
Q Consensus       395 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L  474 (562)
                      +..+++|++|++++|.+.+..  +  +..+++|++|++++|++.+                       .  +.+..+++|
T Consensus       305 ~~~l~~L~~L~L~~n~l~~~~--~--~~~l~~L~~L~l~~n~l~~-----------------------~--~~l~~l~~L  355 (466)
T 1o6v_A          305 ISNLKNLTYLTLYFNNISDIS--P--VSSLTKLQRLFFYNNKVSD-----------------------V--SSLANLTNI  355 (466)
T ss_dssp             GGGCTTCSEEECCSSCCSCCG--G--GGGCTTCCEEECCSSCCCC-----------------------C--GGGTTCTTC
T ss_pred             hcCCCCCCEEECcCCcCCCch--h--hccCccCCEeECCCCccCC-----------------------c--hhhccCCCC
Confidence            667777777777777776543  2  5567777777777777632                       1  345666777


Q ss_pred             CEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccc
Q 048635          475 YALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG  510 (562)
Q Consensus       475 ~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~  510 (562)
                      +.|++++|++++..|  +..+++|+.|++++|++++
T Consensus       356 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          356 NWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             CEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            777777777776655  6677777777777777764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=4e-36  Score=306.76  Aligned_cols=370  Identities=25%  Similarity=0.284  Sum_probs=266.9

Q ss_pred             CCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCC-------------CEEEcc
Q 048635           75 NLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKEL-------------RELYLD  141 (562)
Q Consensus        75 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L-------------~~L~l~  141 (562)
                      +.++|++|++++|.+ +.+|++++++++|++|++++|.+        ....|..++++++|             ++|+++
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~--------~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~   79 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEW--------ERNAPPGNGEQREMAVSRLRDCLDRQAHELELN   79 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHH--------HHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECT
T ss_pred             ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcc--------cccCCcccccchhcchhhhhhhhccCCCEEEec
Confidence            468999999999999 68999999999999999999974        45678888888764             999999


Q ss_pred             CccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCC
Q 048635          142 NVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVST  221 (562)
Q Consensus       142 ~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~  221 (562)
                      +|.+++++.       ..++|++|++++|.+.+ .|..               .++|++|++++|.+++ ++..   .++
T Consensus        80 ~~~l~~lp~-------~~~~L~~L~l~~n~l~~-lp~~---------------~~~L~~L~l~~n~l~~-l~~~---~~~  132 (454)
T 1jl5_A           80 NLGLSSLPE-------LPPHLESLVASCNSLTE-LPEL---------------PQSLKSLLVDNNNLKA-LSDL---PPL  132 (454)
T ss_dssp             TSCCSCCCS-------CCTTCSEEECCSSCCSS-CCCC---------------CTTCCEEECCSSCCSC-CCSC---CTT
T ss_pred             CCccccCCC-------CcCCCCEEEccCCcCCc-cccc---------------cCCCcEEECCCCccCc-ccCC---CCC
Confidence            999988764       24789999999999887 3321               2579999999999884 3321   268


Q ss_pred             ccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcC
Q 048635          222 LETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSS  301 (562)
Q Consensus       222 L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  301 (562)
                      |++|++++|.+..  ++.+..+++|++|++++|.+++ +|..   .++|++|++++|.+++ +| .++.+++|++|++++
T Consensus       133 L~~L~L~~n~l~~--lp~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~  204 (454)
T 1jl5_A          133 LEYLGVSNNQLEK--LPELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADN  204 (454)
T ss_dssp             CCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCS
T ss_pred             CCEEECcCCCCCC--CcccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCC
Confidence            9999999998754  5578889999999999999985 4543   3589999999999986 55 689999999999999


Q ss_pred             CcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEE
Q 048635          302 NHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLD  381 (562)
Q Consensus       302 n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  381 (562)
                      |.+.+....   .++|++|++++|.++            .+|.  +..+++|+.|++++|++++ +|..   +++|++|+
T Consensus       205 N~l~~l~~~---~~~L~~L~l~~n~l~------------~lp~--~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~  263 (454)
T 1jl5_A          205 NSLKKLPDL---PLSLESIVAGNNILE------------ELPE--LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALN  263 (454)
T ss_dssp             SCCSSCCCC---CTTCCEEECCSSCCS------------SCCC--CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEE
T ss_pred             CcCCcCCCC---cCcccEEECcCCcCC------------cccc--cCCCCCCCEEECCCCcCCc-cccc---ccccCEEE
Confidence            999864322   358999999999876            5663  7888999999999999985 4442   47899999


Q ss_pred             cccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCc
Q 048635          382 FRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCR  461 (562)
Q Consensus       382 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~  461 (562)
                      +++|++.+ +|..   +++|++|++++|.+.+...+      .++|++|++++|++.+                      
T Consensus       264 l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~------~~~L~~L~l~~N~l~~----------------------  311 (454)
T 1jl5_A          264 VRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSEL------PPNLYYLNASSNEIRS----------------------  311 (454)
T ss_dssp             CCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCC------CTTCCEEECCSSCCSE----------------------
T ss_pred             CCCCcccc-cCcc---cCcCCEEECcCCccCcccCc------CCcCCEEECcCCcCCc----------------------
Confidence            99999988 4433   47899999999999875422      2689999999999842                      


Q ss_pred             ccccccccCc-CCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCccee--cCCC
Q 048635          462 DQATEEMGRF-KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVG--QIPT  538 (562)
Q Consensus       462 ~~~~~~l~~l-~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~--~~p~  538 (562)
                            +..+ ++|+.|++++|.+++ +|..   +++|++|++++|+++ .+|.   .+++|++|++++|++++  .+|.
T Consensus       312 ------i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~  377 (454)
T 1jl5_A          312 ------LCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPE  377 (454)
T ss_dssp             ------ECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCT
T ss_pred             ------ccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChH
Confidence                  1122 589999999999995 6654   589999999999999 5676   47899999999999998  7777


Q ss_pred             CC----------------CCCccccchHHHHhh
Q 048635          539 AK----------------HVLPNFNLHRRQLQA  555 (562)
Q Consensus       539 ~~----------------~~~~~l~~~~~~l~~  555 (562)
                      .+                ..+..+++++|++++
T Consensus       378 ~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~  410 (454)
T 1jl5_A          378 SVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE  410 (454)
T ss_dssp             TCCEEECCC------------------------
T ss_pred             HHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence            65                345666666666654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.7e-35  Score=304.85  Aligned_cols=344  Identities=25%  Similarity=0.336  Sum_probs=255.5

Q ss_pred             CCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCC
Q 048635           38 GHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGF  117 (562)
Q Consensus        38 ~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~  117 (562)
                      .++++|+++++ .+.. +               +.+..+++|++|++++|.+++. +. +..+++|++|++++|.+.   
T Consensus        46 ~~l~~L~l~~~-~i~~-l---------------~~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~---  103 (466)
T 1o6v_A           46 DQVTTLQADRL-GIKS-I---------------DGVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIA---  103 (466)
T ss_dssp             HTCCEEECCSS-CCCC-C---------------TTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC---
T ss_pred             ccccEEecCCC-CCcc-C---------------cchhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccc---
Confidence            57788888777 4332 1               2467788888888888888854 33 888888888888888752   


Q ss_pred             CccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCC
Q 048635          118 SWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLN  197 (562)
Q Consensus       118 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~  197 (562)
                           .. +. +.++++|++|++++|.+++++     .+..+++|++|++++|.+.+..              .+..+++
T Consensus       104 -----~~-~~-~~~l~~L~~L~L~~n~l~~~~-----~~~~l~~L~~L~l~~n~l~~~~--------------~~~~l~~  157 (466)
T 1o6v_A          104 -----DI-TP-LANLTNLTGLTLFNNQITDID-----PLKNLTNLNRLELSSNTISDIS--------------ALSGLTS  157 (466)
T ss_dssp             -----CC-GG-GTTCTTCCEEECCSSCCCCCG-----GGTTCTTCSEEEEEEEEECCCG--------------GGTTCTT
T ss_pred             -----cC-hh-hcCCCCCCEEECCCCCCCCCh-----HHcCCCCCCEEECCCCccCCCh--------------hhccCCc
Confidence                 22 22 788888888888888887764     3778888888888888776531              1556777


Q ss_pred             CCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccC
Q 048635          198 LTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRS  277 (562)
Q Consensus       198 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~  277 (562)
                      |++|++.+ .+.+.  ..+..+++|+.|++++|.+..  .+.+..+++|++|++++|.+.+..+  ++.+++|++|++++
T Consensus       158 L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~  230 (466)
T 1o6v_A          158 LQQLSFGN-QVTDL--KPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG  230 (466)
T ss_dssp             CSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCS
T ss_pred             ccEeecCC-cccCc--hhhccCCCCCEEECcCCcCCC--ChhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCC
Confidence            88888863 44322  237788888888888887633  3456678888888888888876544  66788888888888


Q ss_pred             CcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEE
Q 048635          278 CSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILD  357 (562)
Q Consensus       278 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~  357 (562)
                      |.+++.  ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.++            .++.  +..+++|+.|+
T Consensus       231 n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~------------~~~~--~~~l~~L~~L~  293 (466)
T 1o6v_A          231 NQLKDI--GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQIS------------NISP--LAGLTALTNLE  293 (466)
T ss_dssp             SCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCC------------CCGG--GTTCTTCSEEE
T ss_pred             CCcccc--hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccC------------cccc--ccCCCccCeEE
Confidence            888743  357778888888888888876544 777888888888888776            3333  66778888888


Q ss_pred             CcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcC
Q 048635          358 LSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKF  437 (562)
Q Consensus       358 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~  437 (562)
                      +++|.+++..+  +..+++|++|++++|++.+..+  +..+++|++|++++|.+.+.    ..+..+++|++|++++|++
T Consensus       294 L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~l~~n~l  365 (466)
T 1o6v_A          294 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV----SSLANLTNINWLSAGHNQI  365 (466)
T ss_dssp             CCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC----GGGTTCTTCCEEECCSSCC
T ss_pred             cCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc----hhhccCCCCCEEeCCCCcc
Confidence            88888876443  6778888888888888888655  67788888888888888753    3567788888888888887


Q ss_pred             CCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCcc
Q 048635          438 GGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTG  486 (562)
Q Consensus       438 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~  486 (562)
                      .+                       ..|  +..+++|+.|++++|.+++
T Consensus       366 ~~-----------------------~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          366 SD-----------------------LTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CB-----------------------CGG--GTTCTTCCEEECCCEEEEC
T ss_pred             Cc-----------------------cch--hhcCCCCCEEeccCCcccC
Confidence            43                       222  6777888888888888875

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.1e-35  Score=303.66  Aligned_cols=347  Identities=20%  Similarity=0.201  Sum_probs=195.5

Q ss_pred             ccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCc
Q 048635           72 GLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTE  151 (562)
Q Consensus        72 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~  151 (562)
                      .++++++|++|++++|.+++ +| .+..+++|++|++++|.+.        . ++  ++.+++|++|++++|.++.++  
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~--------~-~~--~~~l~~L~~L~Ls~N~l~~~~--  101 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNIT--------T-LD--LSQNTNLTYLACDSNKLTNLD--  101 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCS--------C-CC--CTTCTTCSEEECCSSCCSCCC--
T ss_pred             ChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCC--------e-Ec--cccCCCCCEEECcCCCCceee--
Confidence            45556666666666666664 34 4666666666666666642        1 11  566666666666666666542  


Q ss_pred             cccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCC
Q 048635          152 RCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNP  231 (562)
Q Consensus       152 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~  231 (562)
                          +..+++|++|++++|.+.+..               ++.+++|++|++++|.+++.   .+..+++|+.|++++|.
T Consensus       102 ----~~~l~~L~~L~L~~N~l~~l~---------------~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~  159 (457)
T 3bz5_A          102 ----VTPLTKLTYLNCDTNKLTKLD---------------VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNK  159 (457)
T ss_dssp             ----CTTCTTCCEEECCSSCCSCCC---------------CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCS
T ss_pred             ----cCCCCcCCEEECCCCcCCeec---------------CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCC
Confidence                455666666666666665421               34455666666666666642   25566666666666663


Q ss_pred             CCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCC
Q 048635          232 LLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSF  311 (562)
Q Consensus       232 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~  311 (562)
                      ... .+ .+..+++|++|++++|.+++. |  +..+++|+.|++++|.+++.   .+..+++|++|++++|.+.+. | +
T Consensus       160 ~~~-~~-~~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p-~  229 (457)
T 3bz5_A          160 KIT-KL-DVTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D-V  229 (457)
T ss_dssp             CCC-CC-CCTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C-C
T ss_pred             ccc-cc-ccccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C-c
Confidence            221 11 345566666666666666642 2  55666666666666666643   255666666666666666652 2 5


Q ss_pred             CCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcC----------CcccccCCccCCCCCCCCEEE
Q 048635          312 HESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSG----------NQLQGVVPKSLANCNMLQVLD  381 (562)
Q Consensus       312 ~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~----------n~l~~~~~~~l~~l~~L~~L~  381 (562)
                      ..+++|++|++++|.++            .+|   ...+++|+.|++++          |.+.+.+|  +..+++|+.|+
T Consensus       230 ~~l~~L~~L~l~~N~l~------------~~~---~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~  292 (457)
T 3bz5_A          230 TPLTQLTYFDCSVNPLT------------ELD---VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELD  292 (457)
T ss_dssp             TTCTTCSEEECCSSCCS------------CCC---CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCC
T ss_pred             cccCCCCEEEeeCCcCC------------CcC---HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEE
Confidence            56666666666666655            222   22333344444433          33222222  22334444444


Q ss_pred             cccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCc
Q 048635          382 FRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCR  461 (562)
Q Consensus       382 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~  461 (562)
                      +++|...+.+|.   ..++|+.|+               +..+++|++|++++|++++                      
T Consensus       293 Ls~n~~l~~l~~---~~~~L~~L~---------------l~~~~~L~~L~L~~N~l~~----------------------  332 (457)
T 3bz5_A          293 VTHNTQLYLLDC---QAAGITELD---------------LSQNPKLVYLYLNNTELTE----------------------  332 (457)
T ss_dssp             CTTCTTCCEEEC---TTCCCSCCC---------------CTTCTTCCEEECTTCCCSC----------------------
T ss_pred             CCCCcccceecc---CCCcceEec---------------hhhcccCCEEECCCCcccc----------------------
Confidence            444443333331   122233222               2334567777777777632                      


Q ss_pred             ccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceecCCCC
Q 048635          462 DQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTA  539 (562)
Q Consensus       462 ~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~  539 (562)
                        +  .+..+++|+.|++++|++++        ++.|+.|++++|+++|.     ..+..|+.+++++|+++|.+|..
T Consensus       333 --l--~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          333 --L--DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             --C--CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred             --c--ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence              1  15666777777777777774        24455666777777654     24456777777778877777764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.1e-34  Score=296.46  Aligned_cols=312  Identities=22%  Similarity=0.178  Sum_probs=254.4

Q ss_pred             CCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCC
Q 048635           38 GHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGF  117 (562)
Q Consensus        38 ~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~  117 (562)
                      .++++||++++ .+.+.               | .+..+++|++|++++|.+++. |  ++.+++|++|++++|.+.   
T Consensus        42 ~~L~~L~Ls~n-~l~~~---------------~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~---   98 (457)
T 3bz5_A           42 ATLTSLDCHNS-SITDM---------------T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLT---   98 (457)
T ss_dssp             TTCCEEECCSS-CCCCC---------------T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCS---
T ss_pred             CCCCEEEccCC-CcccC---------------h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCc---
Confidence            68999999998 55532               2 578899999999999999964 4  899999999999999863   


Q ss_pred             CccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCC
Q 048635          118 SWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLN  197 (562)
Q Consensus       118 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~  197 (562)
                           . .+  ++++++|++|++++|.++.++      +..+++|++|++++|.+++..               ++.+++
T Consensus        99 -----~-~~--~~~l~~L~~L~L~~N~l~~l~------~~~l~~L~~L~l~~N~l~~l~---------------l~~l~~  149 (457)
T 3bz5_A           99 -----N-LD--VTPLTKLTYLNCDTNKLTKLD------VSQNPLLTYLNCARNTLTEID---------------VSHNTQ  149 (457)
T ss_dssp             -----C-CC--CTTCTTCCEEECCSSCCSCCC------CTTCTTCCEEECTTSCCSCCC---------------CTTCTT
T ss_pred             -----e-ee--cCCCCcCCEEECCCCcCCeec------CCCCCcCCEEECCCCccceec---------------cccCCc
Confidence                 2 22  889999999999999998763      678999999999999987742               556788


Q ss_pred             CCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccC
Q 048635          198 LTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRS  277 (562)
Q Consensus       198 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~  277 (562)
                      |++|++++|...+.+  .+..+++|+.|++++|.+...  + +..+++|+.|++++|.+++.   .+..+++|++|++++
T Consensus       150 L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l--~-l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~  221 (457)
T 3bz5_A          150 LTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL--D-VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSS  221 (457)
T ss_dssp             CCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC--C-CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCS
T ss_pred             CCEEECCCCCccccc--ccccCCcCCEEECCCCcccee--c-cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcC
Confidence            999999999655454  477899999999999987553  3 77789999999999999875   478899999999999


Q ss_pred             CcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEE
Q 048635          278 CSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILD  357 (562)
Q Consensus       278 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~  357 (562)
                      |.+++ +|  +..+++|+.|++++|.+.+..  ...+++|+.|++++|.+. .+++++|.+.+.+|   +..+++|+.|+
T Consensus       222 N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~-~L~l~~n~~~~~~~---~~~l~~L~~L~  292 (457)
T 3bz5_A          222 NKLTE-ID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLL-EIDLTHNTQLIYFQ---AEGCRKIKELD  292 (457)
T ss_dssp             SCCSC-CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCCS-CCCCTTCTTCCEEE---CTTCTTCCCCC
T ss_pred             Ccccc-cC--ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCC-EEECCCCccCCccc---ccccccCCEEE
Confidence            99996 45  888999999999999998754  567899999999999885 67889998888877   56778999999


Q ss_pred             CcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcC
Q 048635          358 LSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKF  437 (562)
Q Consensus       358 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~  437 (562)
                      +++|...+.+|.   ..++|+.|++++|             ++|++|++++|++++.     .+..+++|+.|++++|++
T Consensus       293 Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-----~l~~l~~L~~L~l~~N~l  351 (457)
T 3bz5_A          293 VTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-----DVSHNTKLKSLSCVNAHI  351 (457)
T ss_dssp             CTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-----CCTTCTTCSEEECCSSCC
T ss_pred             CCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-----ccccCCcCcEEECCCCCC
Confidence            999987766653   3345555555444             5777788888877752     266777788888888777


Q ss_pred             CC
Q 048635          438 GG  439 (562)
Q Consensus       438 ~~  439 (562)
                      ++
T Consensus       352 ~~  353 (457)
T 3bz5_A          352 QD  353 (457)
T ss_dssp             CB
T ss_pred             CC
Confidence            43

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=5.9e-34  Score=294.79  Aligned_cols=346  Identities=18%  Similarity=0.137  Sum_probs=236.7

Q ss_pred             EEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhh
Q 048635          137 ELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKI  216 (562)
Q Consensus       137 ~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l  216 (562)
                      .++.+++.++.++..    +  .+++++|++++|.+.+..+..            +.++++|++|++++|.+++..|..|
T Consensus        15 ~v~c~~~~l~~ip~~----~--~~~l~~L~L~~n~l~~~~~~~------------~~~l~~L~~L~L~~n~i~~~~~~~~   76 (477)
T 2id5_A           15 AVLCHRKRFVAVPEG----I--PTETRLLDLGKNRIKTLNQDE------------FASFPHLEELELNENIVSAVEPGAF   76 (477)
T ss_dssp             EEECCSCCCSSCCSC----C--CTTCSEEECCSSCCCEECTTT------------TTTCTTCCEEECTTSCCCEECTTTT
T ss_pred             EEEeCCCCcCcCCCC----C--CCCCcEEECCCCccceECHhH------------ccCCCCCCEEECCCCccCEeChhhh
Confidence            445555555555431    1  235666666666665544332            3344556666666666666666666


Q ss_pred             hCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCe
Q 048635          217 LQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFH  296 (562)
Q Consensus       217 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  296 (562)
                      .++++|++|++++|.+.......|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus        77 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  156 (477)
T 2id5_A           77 NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ  156 (477)
T ss_dssp             TTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCE
T ss_pred             hCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCE
Confidence            67777777777777665544445666777777777777777666667777777777777777777666667777777777


Q ss_pred             eeCcCCcccccCCC-CCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCC
Q 048635          297 VDFSSNHFSGPIPS-FHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCN  375 (562)
Q Consensus       297 L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~  375 (562)
                      |++++|.+.+..+. +..+++|+.|++++|.+.            .++...+..+++|+.|++++|...+.++.......
T Consensus       157 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~------------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  224 (477)
T 2id5_A          157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN------------AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL  224 (477)
T ss_dssp             EEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC------------EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTC
T ss_pred             EECCCCcCcccChhHhcccCCCcEEeCCCCcCc------------EeChhhcccCcccceeeCCCCccccccCcccccCc
Confidence            77777777654332 466777777777777765            34444477778888888888776666666666666


Q ss_pred             CCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhh
Q 048635          376 MLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQA  455 (562)
Q Consensus       376 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~  455 (562)
                      +|++|++++|++++..+..+..+++|++|++++|.+.+..  +..+..+++|++|++++|++.                 
T Consensus       225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~-----------------  285 (477)
T 2id5_A          225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE--GSMLHELLRLQEIQLVGGQLA-----------------  285 (477)
T ss_dssp             CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEEC--TTSCTTCTTCCEEECCSSCCS-----------------
T ss_pred             cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccC--hhhccccccCCEEECCCCccc-----------------
Confidence            8888888888888766677888888888888888888766  667788888888888888873                 


Q ss_pred             hhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceec
Q 048635          456 TNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQ  535 (562)
Q Consensus       456 ~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~  535 (562)
                            +..+..+..+++|+.|++++|.+++..+..|..+++|++|++++|.+....+..+. ......+.+.++.....
T Consensus       286 ------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~-~~~~~~~~~~~~~~~C~  358 (477)
T 2id5_A          286 ------VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWV-FRRRWRLNFNRQQPTCA  358 (477)
T ss_dssp             ------EECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHH-HTTTTSSCCTTCCCBEE
T ss_pred             ------eECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhH-HhhhhccccCccCceeC
Confidence                  44456677888888888888888876667788888888888888888743222111 12334445555554444


Q ss_pred             CCC
Q 048635          536 IPT  538 (562)
Q Consensus       536 ~p~  538 (562)
                      -|.
T Consensus       359 ~p~  361 (477)
T 2id5_A          359 TPE  361 (477)
T ss_dssp             ESG
T ss_pred             Cch
Confidence            443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.4e-34  Score=296.56  Aligned_cols=321  Identities=17%  Similarity=0.152  Sum_probs=281.2

Q ss_pred             CEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCC
Q 048635          163 QVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPK  242 (562)
Q Consensus       163 ~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~  242 (562)
                      +.++.+++.++.. |..+              .+++++|++++|.+++..+..|..+++|++|++++|.+.......|..
T Consensus        14 ~~v~c~~~~l~~i-p~~~--------------~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~   78 (477)
T 2id5_A           14 RAVLCHRKRFVAV-PEGI--------------PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN   78 (477)
T ss_dssp             TEEECCSCCCSSC-CSCC--------------CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             CEEEeCCCCcCcC-CCCC--------------CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhC
Confidence            4667777666543 2221              247999999999999888899999999999999999887776778999


Q ss_pred             CCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCC-CCCCCCCCCEEE
Q 048635          243 NSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIP-SFHESRNLNYLD  321 (562)
Q Consensus       243 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~  321 (562)
                      +++|++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+ .+..+++|++|+
T Consensus        79 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  158 (477)
T 2id5_A           79 LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT  158 (477)
T ss_dssp             CTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEE
T ss_pred             CccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEE
Confidence            9999999999999997777778999999999999999998888899999999999999999987654 578899999999


Q ss_pred             cCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCC
Q 048635          322 LSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSL  401 (562)
Q Consensus       322 l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  401 (562)
                      +++|.++            .++...+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+.++.......+|
T Consensus       159 l~~n~l~------------~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L  226 (477)
T 2id5_A          159 LEKCNLT------------SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL  226 (477)
T ss_dssp             EESCCCS------------SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCC
T ss_pred             CCCCcCc------------ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccc
Confidence            9999887            6676668999999999999999998888899999999999999998887777666667799


Q ss_pred             CEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcC
Q 048635          402 QVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSH  481 (562)
Q Consensus       402 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~  481 (562)
                      ++|++++|.+....  ...+..+++|++|++++|++.                       +..+..+..+++|++|++++
T Consensus       227 ~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~-----------------------~~~~~~~~~l~~L~~L~L~~  281 (477)
T 2id5_A          227 TSLSITHCNLTAVP--YLAVRHLVYLRFLNLSYNPIS-----------------------TIEGSMLHELLRLQEIQLVG  281 (477)
T ss_dssp             SEEEEESSCCCSCC--HHHHTTCTTCCEEECCSSCCC-----------------------EECTTSCTTCTTCCEEECCS
T ss_pred             cEEECcCCcccccC--HHHhcCccccCeeECCCCcCC-----------------------ccChhhccccccCCEEECCC
Confidence            99999999998543  346788999999999999984                       34455678899999999999


Q ss_pred             CcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceec
Q 048635          482 NALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQ  535 (562)
Q Consensus       482 n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~  535 (562)
                      |.+++..|..|..+++|+.|+|++|++++..+..+..+++|++|++++|++.+.
T Consensus       282 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          282 GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD  335 (477)
T ss_dssp             SCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred             CccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence            999988899999999999999999999988888889999999999999999854

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=6.3e-33  Score=279.21  Aligned_cols=312  Identities=21%  Similarity=0.231  Sum_probs=233.4

Q ss_pred             CCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcc
Q 048635          131 NLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRG  210 (562)
Q Consensus       131 ~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~  210 (562)
                      .++++++|+++++.++.++.   ..+..+++|++|++++|.+.+..+..            +..+++|++|++++|.+++
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~---~~~~~l~~L~~L~L~~n~i~~~~~~~------------~~~l~~L~~L~L~~n~l~~  107 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPA---ALLDSFRQVELLNLNDLQIEEIDTYA------------FAYAHTIQKLYMGFNAIRY  107 (390)
T ss_dssp             GGCCCSEEEEESCEESEECT---HHHHHCCCCSEEECTTSCCCEECTTT------------TTTCTTCCEEECCSSCCCC
T ss_pred             ccCCceEEEecCCchhhCCh---hHhcccccCcEEECCCCcccccChhh------------ccCCCCcCEEECCCCCCCc
Confidence            36789999999999988875   44677899999999999887765443            4556779999999999988


Q ss_pred             cCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCC
Q 048635          211 KYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTN  290 (562)
Q Consensus       211 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  290 (562)
                      ..+..+..+++|++|++++|.+.......+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.   .+..
T Consensus       108 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~  184 (390)
T 3o6n_A          108 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSL  184 (390)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGG
T ss_pred             CCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---cccc
Confidence            7788888899999999999987654444567788899999999988877777788888899999998888753   2556


Q ss_pred             CCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCcc
Q 048635          291 LTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKS  370 (562)
Q Consensus       291 l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  370 (562)
                      +++|+.+++++|.+.+..    ..++|++|++++|.+.            .+|..   ..++|+.|++++|.+++.  ..
T Consensus       185 l~~L~~L~l~~n~l~~~~----~~~~L~~L~l~~n~l~------------~~~~~---~~~~L~~L~l~~n~l~~~--~~  243 (390)
T 3o6n_A          185 IPSLFHANVSYNLLSTLA----IPIAVEELDASHNSIN------------VVRGP---VNVELTILKLQHNNLTDT--AW  243 (390)
T ss_dssp             CTTCSEEECCSSCCSEEE----CCSSCSEEECCSSCCC------------EEECC---CCSSCCEEECCSSCCCCC--GG
T ss_pred             ccccceeecccccccccC----CCCcceEEECCCCeee------------ecccc---ccccccEEECCCCCCccc--HH
Confidence            788888888888776432    2356888888888776            22222   234678888888887743  46


Q ss_pred             CCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhh
Q 048635          371 LANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLG  450 (562)
Q Consensus       371 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  450 (562)
                      +..+++|++|++++|.+.+..|..+..+++|++|++++|++.+.   +.....+++|++|++++|++.            
T Consensus       244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~l~~L~~L~L~~n~l~------------  308 (390)
T 3o6n_A          244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL---NLYGQPIPTLKVLDLSHNHLL------------  308 (390)
T ss_dssp             GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE---ECSSSCCTTCCEEECCSSCCC------------
T ss_pred             HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc---CcccCCCCCCCEEECCCCcce------------
Confidence            77778888888888888777777777788888888888877754   344456777777777777762            


Q ss_pred             hhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCccccc
Q 048635          451 MRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGK  511 (562)
Q Consensus       451 l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~  511 (562)
                                  .+|..+..+++|+.|++++|.+++. +  +..+++|+.|++++|+++..
T Consensus       309 ------------~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          309 ------------HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             ------------CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred             ------------ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence                        3444456667777777777777733 3  56677777777777777653

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=7.6e-35  Score=283.33  Aligned_cols=272  Identities=29%  Similarity=0.422  Sum_probs=229.5

Q ss_pred             CCCCCCCCCCCCCC--cceeeeCCC---CCeEEEECCCCCCcce--eecCCCCCcCcccccCccccCCCCCCCEEecCC-
Q 048635           15 AKMSQWSDSTNCCD--WTGVDCDEA---GHVIGLDLSAEPILIG--RLENASGLFSLQYMQSQFGLANLTNLTYLNLSH-   86 (562)
Q Consensus        15 ~~~~~w~~~~~~c~--w~g~~c~~~---~~v~~Ldl~~~~~~~~--~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~-   86 (562)
                      ..++.|..+.+||.  |.||.|...   ++|++|+++++ .+.+  .+              |..|.++++|++|++++ 
T Consensus        22 ~~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~-~l~~~~~~--------------~~~l~~l~~L~~L~L~~~   86 (313)
T 1ogq_A           22 TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL-NLPKPYPI--------------PSSLANLPYLNFLYIGGI   86 (313)
T ss_dssp             GGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECC-CCSSCEEC--------------CGGGGGCTTCSEEEEEEE
T ss_pred             ccccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCC-CccCCccc--------------ChhHhCCCCCCeeeCCCC
Confidence            36789988889998  999999865   79999999999 7776  55              67899999999999995 


Q ss_pred             ccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEe
Q 048635           87 CGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLN  166 (562)
Q Consensus        87 n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~  166 (562)
                      |.+.+.+|..|+++++|++|++++|.+        ....|..|.++++|++|++++|.++...+   ..+..+++|++|+
T Consensus        87 n~l~~~~p~~l~~l~~L~~L~Ls~n~l--------~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~  155 (313)
T 1ogq_A           87 NNLVGPIPPAIAKLTQLHYLYITHTNV--------SGAIPDFLSQIKTLVTLDFSYNALSGTLP---PSISSLPNLVGIT  155 (313)
T ss_dssp             TTEESCCCGGGGGCTTCSEEEEEEECC--------EEECCGGGGGCTTCCEEECCSSEEESCCC---GGGGGCTTCCEEE
T ss_pred             CcccccCChhHhcCCCCCEEECcCCee--------CCcCCHHHhCCCCCCEEeCCCCccCCcCC---hHHhcCCCCCeEE
Confidence            899989999999999999999999984        35678889999999999999999985443   5678899999999


Q ss_pred             cccCCCCCccchhcccccCCCCcccccCCC-CCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCC
Q 048635          167 LSSCLLLGPINHHLANLRSHSQFFFVANLL-NLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSY  245 (562)
Q Consensus       167 l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~  245 (562)
                      +++|.+.+..|..+..            ++ +|++|++++|.+++..|..+..++ |+.|++++|.+.......+..+++
T Consensus       156 L~~N~l~~~~p~~l~~------------l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~  222 (313)
T 1ogq_A          156 FDGNRISGAIPDSYGS------------FSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKN  222 (313)
T ss_dssp             CCSSCCEEECCGGGGC------------CCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSC
T ss_pred             CcCCcccCcCCHHHhh------------hhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCC
Confidence            9999998777665544            44 799999999999988999998887 999999998876555556777888


Q ss_pred             CCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCC
Q 048635          246 LQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSN  325 (562)
Q Consensus       246 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n  325 (562)
                      |+.|++++|.+++..+. +..+++|++|++++|.+++..|..+..+++|++|++++|.+++.+|....+++|+.+++++|
T Consensus       223 L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N  301 (313)
T 1ogq_A          223 TQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN  301 (313)
T ss_dssp             CSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSS
T ss_pred             CCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCC
Confidence            99999998888766554 67788888899988888888888888888888888888888877777677777777777777


Q ss_pred             C
Q 048635          326 N  326 (562)
Q Consensus       326 ~  326 (562)
                      +
T Consensus       302 ~  302 (313)
T 1ogq_A          302 K  302 (313)
T ss_dssp             S
T ss_pred             C
Confidence            5

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=6.7e-33  Score=274.62  Aligned_cols=307  Identities=23%  Similarity=0.337  Sum_probs=197.7

Q ss_pred             ccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcC
Q 048635          129 FQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDL  208 (562)
Q Consensus       129 ~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~  208 (562)
                      +..+++|++|+++++.+..++     .+..+++|++|++++|.+.+..+              +..+++|++|++++|.+
T Consensus        40 ~~~l~~L~~L~l~~~~i~~~~-----~~~~~~~L~~L~l~~n~i~~~~~--------------~~~l~~L~~L~L~~n~i  100 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVASIQ-----GIEYLTNLEYLNLNGNQITDISP--------------LSNLVKLTNLYIGTNKI  100 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCCCT-----TGGGCTTCCEEECCSSCCCCCGG--------------GTTCTTCCEEECCSSCC
T ss_pred             chhcccccEEEEeCCccccch-----hhhhcCCccEEEccCCccccchh--------------hhcCCcCCEEEccCCcc
Confidence            344555666666666555442     24455555555555555443221              23334455555555544


Q ss_pred             cccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccC
Q 048635          209 RGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTST  288 (562)
Q Consensus       209 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l  288 (562)
                      +.                          ++.+..+++|++|++++|.+.+..+  +..+++|++|++++|...... ..+
T Consensus       101 ~~--------------------------~~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~  151 (347)
T 4fmz_A          101 TD--------------------------ISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPL  151 (347)
T ss_dssp             CC--------------------------CGGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGG
T ss_pred             cC--------------------------chHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cch
Confidence            42                          2234444455555555555443211  455555666666655443222 225


Q ss_pred             CCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCC
Q 048635          289 TNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVP  368 (562)
Q Consensus       289 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  368 (562)
                      ..+++|++|++++|.+.+..+ +..+++|++|++++|.+.            .++.  +..+++|+.+++++|.+.+..+
T Consensus       152 ~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~------------~~~~--~~~l~~L~~L~l~~n~l~~~~~  216 (347)
T 4fmz_A          152 SNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIE------------DISP--LASLTSLHYFTAYVNQITDITP  216 (347)
T ss_dssp             TTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCC------------CCGG--GGGCTTCCEEECCSSCCCCCGG
T ss_pred             hhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccc------------cccc--ccCCCccceeecccCCCCCCch
Confidence            556666666666666554332 556666777777666654            2222  5556677788888777775433


Q ss_pred             ccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhh
Q 048635          369 KSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTT  448 (562)
Q Consensus       369 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  448 (562)
                        +..+++|++|++++|++++..+  +..+++|++|++++|.+...    ..+..+++|++|++++|++.+         
T Consensus       217 --~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~l~~n~l~~---------  279 (347)
T 4fmz_A          217 --VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI----NAVKDLTKLKMLNVGSNQISD---------  279 (347)
T ss_dssp             --GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC----GGGTTCTTCCEEECCSSCCCC---------
T ss_pred             --hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC----hhHhcCCCcCEEEccCCccCC---------
Confidence              6677888888888888877544  77788888888888887653    346778888888888888732         


Q ss_pred             hhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCc
Q 048635          449 LGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLS  528 (562)
Q Consensus       449 ~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~  528 (562)
                                     + +.+..+++|+.|++++|.+++..|..+..+++|++|++++|++++..|  +..+++|++|+++
T Consensus       280 ---------------~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~  341 (347)
T 4fmz_A          280 ---------------I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFA  341 (347)
T ss_dssp             ---------------C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSS
T ss_pred             ---------------C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehh
Confidence                           1 346778999999999999998888889999999999999999997666  8889999999999


Q ss_pred             CCcce
Q 048635          529 YNNLV  533 (562)
Q Consensus       529 ~n~l~  533 (562)
                      +|+++
T Consensus       342 ~N~i~  346 (347)
T 4fmz_A          342 NQVIK  346 (347)
T ss_dssp             CC---
T ss_pred             hhccc
Confidence            99986

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1e-32  Score=277.62  Aligned_cols=311  Identities=19%  Similarity=0.165  Sum_probs=256.2

Q ss_pred             CCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCcccc
Q 048635           75 NLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCK  154 (562)
Q Consensus        75 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~  154 (562)
                      .++++++|+++++.++...+..+..+++|++|++++|.+.        ...+..|.++++|++|++++|.++.+++   .
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~--------~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~  111 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE--------EIDTYAFAYAHTIQKLYMGFNAIRYLPP---H  111 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC--------EECTTTTTTCTTCCEEECCSSCCCCCCT---T
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc--------ccChhhccCCCCcCEEECCCCCCCcCCH---H
Confidence            4688999999999998655555788999999999999853        4455678999999999999999988875   4


Q ss_pred             ccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCC
Q 048635          155 ALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQ  234 (562)
Q Consensus       155 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~  234 (562)
                      .+..+++|++|++++|.+....+..            +.++++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus       112 ~~~~l~~L~~L~L~~n~l~~l~~~~------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  179 (390)
T 3o6n_A          112 VFQNVPLLTVLVLERNDLSSLPRGI------------FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  179 (390)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTT------------TTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred             HhcCCCCCCEEECCCCccCcCCHHH------------hcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence            6788999999999999887544322            4567789999999999998888889999999999999998754


Q ss_pred             CCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCC
Q 048635          235 GSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHES  314 (562)
Q Consensus       235 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  314 (562)
                      .   .+..+++|+.|++++|.+++.     ...+.|++|++++|.+... +..  ..++|+.|++++|.+.+. +.+..+
T Consensus       180 ~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~-~~l~~l  247 (390)
T 3o6n_A          180 V---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT-AWLLNY  247 (390)
T ss_dssp             C---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC-GGGGGC
T ss_pred             c---ccccccccceeeccccccccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc-HHHcCC
Confidence            4   355678899999999988643     3456899999999999854 332  347899999999999864 567889


Q ss_pred             CCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHH
Q 048635          315 RNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCW  394 (562)
Q Consensus       315 ~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  394 (562)
                      ++|++|++++|.++            .++...+..+++|+.|++++|.+++ ++..+..+++|++|++++|++.+ +|..
T Consensus       248 ~~L~~L~Ls~n~l~------------~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~  313 (390)
T 3o6n_A          248 PGLVEVDLSYNELE------------KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERN  313 (390)
T ss_dssp             TTCSEEECCSSCCC------------EEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGG
T ss_pred             CCccEEECCCCcCC------------CcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCcc
Confidence            99999999999886            3333338889999999999999985 56667889999999999999987 5666


Q ss_pred             hhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCC
Q 048635          395 LRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGG  439 (562)
Q Consensus       395 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~  439 (562)
                      +..+++|++|++++|.+...     .+..+++|++|++++|++..
T Consensus       314 ~~~l~~L~~L~L~~N~i~~~-----~~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          314 QPQFDRLENLYLDHNSIVTL-----KLSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             HHHHTTCSEEECCSSCCCCC-----CCCTTCCCSEEECCSSCEEH
T ss_pred             ccccCcCCEEECCCCcccee-----CchhhccCCEEEcCCCCccc
Confidence            88899999999999999743     36788999999999999854

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.7e-32  Score=270.31  Aligned_cols=308  Identities=21%  Similarity=0.278  Sum_probs=239.2

Q ss_pred             ccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCc
Q 048635           72 GLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTE  151 (562)
Q Consensus        72 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~  151 (562)
                      .+..+++|++|+++++.+. .++. +..+++|++|++++|.+.        . .+. +.++++|++|++++|.++.+   
T Consensus        39 ~~~~l~~L~~L~l~~~~i~-~~~~-~~~~~~L~~L~l~~n~i~--------~-~~~-~~~l~~L~~L~L~~n~i~~~---  103 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVA-SIQG-IEYLTNLEYLNLNGNQIT--------D-ISP-LSNLVKLTNLYIGTNKITDI---  103 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCC-CCTT-GGGCTTCCEEECCSSCCC--------C-CGG-GTTCTTCCEEECCSSCCCCC---
T ss_pred             cchhcccccEEEEeCCccc-cchh-hhhcCCccEEEccCCccc--------c-chh-hhcCCcCCEEEccCCcccCc---
Confidence            3456778888888888887 3443 778888888888888742        2 222 77888888888888888765   


Q ss_pred             cccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCC
Q 048635          152 RCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNP  231 (562)
Q Consensus       152 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~  231 (562)
                        ..+..+++|++|++++|.+.+..+              +..+++|++|++++|...... ..+..+++|+.|++++|.
T Consensus       104 --~~~~~l~~L~~L~l~~n~i~~~~~--------------~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~  166 (347)
T 4fmz_A          104 --SALQNLTNLRELYLNEDNISDISP--------------LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESK  166 (347)
T ss_dssp             --GGGTTCTTCSEEECTTSCCCCCGG--------------GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSC
T ss_pred             --hHHcCCCcCCEEECcCCcccCchh--------------hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCC
Confidence              357788888888888887765422              456677888888888655343 347788888888888887


Q ss_pred             CCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCC
Q 048635          232 LLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSF  311 (562)
Q Consensus       232 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~  311 (562)
                      +..  .+.+..+++|++|++++|.+.+..+  +..+++|+.+++++|.+++..+  +..+++|++|++++|.+.+..+ +
T Consensus       167 ~~~--~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~  239 (347)
T 4fmz_A          167 VKD--VTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-L  239 (347)
T ss_dssp             CCC--CGGGGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-G
T ss_pred             cCC--chhhccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-h
Confidence            533  3336778888999998888875432  7788889999999998875433  7788899999999998886554 7


Q ss_pred             CCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcc
Q 048635          312 HESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNF  391 (562)
Q Consensus       312 ~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  391 (562)
                      ..+++|++|++++|.++            .++  .+..+++|+.|++++|.+++.  ..+..+++|++|++++|++.+..
T Consensus       240 ~~l~~L~~L~l~~n~l~------------~~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~  303 (347)
T 4fmz_A          240 ANLSQLTWLEIGTNQIS------------DIN--AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNED  303 (347)
T ss_dssp             TTCTTCCEEECCSSCCC------------CCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGG
T ss_pred             hcCCCCCEEECCCCccC------------CCh--hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcC
Confidence            78899999999998876            332  277888999999999998864  45788999999999999999888


Q ss_pred             hHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCC
Q 048635          392 PCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFG  438 (562)
Q Consensus       392 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~  438 (562)
                      +..+..+++|++|++++|++++..  +  +..+++|++|++++|+++
T Consensus       304 ~~~l~~l~~L~~L~L~~n~l~~~~--~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          304 MEVIGGLTNLTTLFLSQNHITDIR--P--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             HHHHHTCTTCSEEECCSSSCCCCG--G--GGGCTTCSEESSSCC---
T ss_pred             hhHhhccccCCEEEccCCcccccc--C--hhhhhccceeehhhhccc
Confidence            888999999999999999998654  3  778999999999999873

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=4.5e-32  Score=287.81  Aligned_cols=313  Identities=21%  Similarity=0.234  Sum_probs=252.9

Q ss_pred             CCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcc
Q 048635          131 NLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRG  210 (562)
Q Consensus       131 ~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~  210 (562)
                      .+++++.++++++.+..+++   ..+..+++|++|++++|.+.+..+..            ++.+++|++|++++|.+++
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~---~~~~~l~~L~~L~L~~n~l~~~~~~~------------~~~l~~L~~L~L~~n~l~~  113 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPA---ALLDSFRQVELLNLNDLQIEEIDTYA------------FAYAHTIQKLYMGFNAIRY  113 (597)
T ss_dssp             GGCCCSEEEESSCEESEECT---HHHHHCCCCSEEECTTSCCCEECTTT------------TTTCTTCCEEECCSSCCCC
T ss_pred             cCCCceEEEeeCCCCCCcCH---HHHccCCCCcEEECCCCCCCCCChHH------------hcCCCCCCEEECCCCcCCC
Confidence            36789999999999998876   45677899999999999988766544            4566789999999999998


Q ss_pred             cCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCC
Q 048635          211 KYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTN  290 (562)
Q Consensus       211 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  290 (562)
                      ..|..|..+++|+.|++++|.+.......|..+++|++|++++|.+++..|..+..+++|++|++++|.+++.   .+..
T Consensus       114 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~  190 (597)
T 3oja_B          114 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSL  190 (597)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGG
T ss_pred             CCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---Chhh
Confidence            8888889999999999999988655555578899999999999999988888899999999999999998854   2566


Q ss_pred             CCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCcc
Q 048635          291 LTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKS  370 (562)
Q Consensus       291 l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  370 (562)
                      +++|+.|++++|.+.+.    ...++|+.|++++|.+.            .++...   .++|+.|++++|.+++  +..
T Consensus       191 l~~L~~L~l~~n~l~~l----~~~~~L~~L~ls~n~l~------------~~~~~~---~~~L~~L~L~~n~l~~--~~~  249 (597)
T 3oja_B          191 IPSLFHANVSYNLLSTL----AIPIAVEELDASHNSIN------------VVRGPV---NVELTILKLQHNNLTD--TAW  249 (597)
T ss_dssp             CTTCSEEECCSSCCSEE----ECCTTCSEEECCSSCCC------------EEECSC---CSCCCEEECCSSCCCC--CGG
T ss_pred             hhhhhhhhcccCccccc----cCCchhheeeccCCccc------------cccccc---CCCCCEEECCCCCCCC--Chh
Confidence            78899999999988753    23457899999988876            222221   2468999999998885  367


Q ss_pred             CCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhh
Q 048635          371 LANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLG  450 (562)
Q Consensus       371 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  450 (562)
                      +..+++|+.|++++|.+.+..|..|..+++|++|++++|.+.+.   +.....+++|++|++++|.+.            
T Consensus       250 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l---~~~~~~l~~L~~L~Ls~N~l~------------  314 (597)
T 3oja_B          250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL---NLYGQPIPTLKVLDLSHNHLL------------  314 (597)
T ss_dssp             GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE---ECSSSCCTTCCEEECCSSCCC------------
T ss_pred             hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC---CcccccCCCCcEEECCCCCCC------------
Confidence            78889999999999999888888888899999999999988864   455567888899999888873            


Q ss_pred             hhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccC
Q 048635          451 MRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKI  512 (562)
Q Consensus       451 l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  512 (562)
                                  .+|..+..+++|+.|++++|.+++. |  +..+++|+.|++++|.+.+..
T Consensus       315 ------------~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~  361 (597)
T 3oja_B          315 ------------HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS  361 (597)
T ss_dssp             ------------CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred             ------------ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChh
Confidence                        3555667788888899998888844 3  667788888888888887643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=3e-32  Score=289.10  Aligned_cols=313  Identities=19%  Similarity=0.168  Sum_probs=257.4

Q ss_pred             CCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCcccc
Q 048635           75 NLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCK  154 (562)
Q Consensus        75 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~  154 (562)
                      .+.+++.+++++|.+....+..|..+++|++|++++|.+        ....+..|.++++|++|++++|.++.+++   .
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l--------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~  117 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI--------EEIDTYAFAYAHTIQKLYMGFNAIRYLPP---H  117 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC--------CEECTTTTTTCTTCCEEECCSSCCCCCCT---T
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC--------CCCChHHhcCCCCCCEEECCCCcCCCCCH---H
Confidence            467889999999999866666678899999999999985        34556688899999999999999988875   4


Q ss_pred             ccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCC
Q 048635          155 ALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQ  234 (562)
Q Consensus       155 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~  234 (562)
                      .+..+++|++|++++|.+.+..+..            ++++++|++|++++|.+++..|..+..+++|+.|++++|.+..
T Consensus       118 ~~~~l~~L~~L~L~~n~l~~l~~~~------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          118 VFQNVPLLTVLVLERNDLSSLPRGI------------FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTT------------TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred             HHcCCCCCCEEEeeCCCCCCCCHHH------------hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence            6788999999999999887654332            4567789999999999998888889999999999999998754


Q ss_pred             CCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCC
Q 048635          235 GSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHES  314 (562)
Q Consensus       235 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  314 (562)
                      .   .+..+++|+.|++++|.+++     +...++|+.|++++|.+....+. +  .++|+.|++++|.+.+. +.+..+
T Consensus       186 ~---~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~~-~~l~~l  253 (597)
T 3oja_B          186 V---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTDT-AWLLNY  253 (597)
T ss_dssp             C---CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCCC-GGGGGC
T ss_pred             c---ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCCC-hhhccC
Confidence            3   34557889999999998764     34456899999999998744332 2  36899999999999864 567889


Q ss_pred             CCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHH
Q 048635          315 RNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCW  394 (562)
Q Consensus       315 ~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  394 (562)
                      ++|+.|++++|.+.           +..|.. +..+++|+.|++++|.+++ +|..+..+++|+.|+|++|.+.. +|..
T Consensus       254 ~~L~~L~Ls~N~l~-----------~~~~~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~  319 (597)
T 3oja_B          254 PGLVEVDLSYNELE-----------KIMYHP-FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERN  319 (597)
T ss_dssp             TTCSEEECCSSCCC-----------EEESGG-GTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGG
T ss_pred             CCCCEEECCCCccC-----------CCCHHH-hcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc-cCcc
Confidence            99999999999876           233444 8889999999999999986 56677889999999999999996 6777


Q ss_pred             hhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcC
Q 048635          395 LRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRL  441 (562)
Q Consensus       395 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  441 (562)
                      +..+++|++|++++|.+.+.     .+..+++|+.|++++|++.+..
T Consensus       320 ~~~l~~L~~L~L~~N~l~~~-----~~~~~~~L~~L~l~~N~~~~~~  361 (597)
T 3oja_B          320 QPQFDRLENLYLDHNSIVTL-----KLSTHHTLKNLTLSHNDWDCNS  361 (597)
T ss_dssp             HHHHTTCSEEECCSSCCCCC-----CCCTTCCCSEEECCSSCEEHHH
T ss_pred             cccCCCCCEEECCCCCCCCc-----ChhhcCCCCEEEeeCCCCCChh
Confidence            88899999999999999743     3677899999999999986543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.4e-29  Score=248.61  Aligned_cols=270  Identities=17%  Similarity=0.210  Sum_probs=134.7

Q ss_pred             CCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEcc
Q 048635          197 NLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLR  276 (562)
Q Consensus       197 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~  276 (562)
                      ++++|++++|.+++..+..+..+++|++|++++|.+.......+..+++|++|++++|.++. +|..+.  ++|++|+++
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~  129 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVH  129 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEECC
T ss_pred             CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhhc--ccccEEECC
Confidence            45555555555554444455555555555555555443333444445555555555555542 222221  445555555


Q ss_pred             CCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEE
Q 048635          277 SCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHIL  356 (562)
Q Consensus       277 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L  356 (562)
                      +|.+++..+..+..+++|++|++++|.+...                                 .+....+..+++|+.|
T Consensus       130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------------------~~~~~~~~~l~~L~~L  176 (330)
T 1xku_A          130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSS---------------------------------GIENGAFQGMKKLSYI  176 (330)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGG---------------------------------GBCTTGGGGCTTCCEE
T ss_pred             CCcccccCHhHhcCCccccEEECCCCcCCcc---------------------------------CcChhhccCCCCcCEE
Confidence            5555443333444445555555555444320                                 0111124444455555


Q ss_pred             ECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCc
Q 048635          357 DLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNK  436 (562)
Q Consensus       357 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~  436 (562)
                      ++++|.++. +|..+.  ++|++|++++|++++..+..+..+++|++|++++|.+.+..  +..+..+++|++|++++|+
T Consensus       177 ~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~  251 (330)
T 1xku_A          177 RIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD--NGSLANTPHLRELHLNNNK  251 (330)
T ss_dssp             ECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC--TTTGGGSTTCCEEECCSSC
T ss_pred             ECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC--hhhccCCCCCCEEECCCCc
Confidence            555555442 222221  45555555555555544455555555555555555555443  3444555555555555555


Q ss_pred             CCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccC------CCCCCeeeCCCCcccc
Q 048635          437 FGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGN------LKQIESLDLSMNNLSG  510 (562)
Q Consensus       437 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~------l~~L~~L~Ls~n~l~~  510 (562)
                      +.                        .+|..+..+++|++|++++|.+++..+..|..      .+.|+.|++++|.+..
T Consensus       252 l~------------------------~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~  307 (330)
T 1xku_A          252 LV------------------------KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  307 (330)
T ss_dssp             CS------------------------SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             Cc------------------------cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence            41                        33444555566666666666666444444432      2556666666666642


Q ss_pred             --cChhhhcCCCCCCeEeCcCCc
Q 048635          511 --KIPAQLASLNFLSVLNLSYNN  531 (562)
Q Consensus       511 --~~p~~l~~l~~L~~L~l~~n~  531 (562)
                        ..|..+..+.+++.+++++|+
T Consensus       308 ~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          308 WEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             GGSCGGGGTTCCCGGGEEC----
T ss_pred             cccCccccccccceeEEEecccC
Confidence              445566666677777776663

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=4.9e-30  Score=252.11  Aligned_cols=287  Identities=18%  Similarity=0.184  Sum_probs=151.1

Q ss_pred             CCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCC
Q 048635          161 NLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNF  240 (562)
Q Consensus       161 ~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~  240 (562)
                      +++.++++++.+... |..+              .+++++|++++|.+++..+..+..+++|++|++++|.+.......+
T Consensus        34 ~l~~l~~~~~~l~~i-p~~~--------------~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~   98 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAV-PKEI--------------SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAF   98 (332)
T ss_dssp             ETTEEECCSSCCSSC-CSCC--------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGS
T ss_pred             cCCEEECCCCCcccc-CCCC--------------CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHh
Confidence            567777776665432 2111              1356667777776665555566666666666666666544444455


Q ss_pred             CCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccc--cC-CCCCCCCCC
Q 048635          241 PKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSG--PI-PSFHESRNL  317 (562)
Q Consensus       241 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~--~~-~~~~~~~~L  317 (562)
                      ..+++|++|++++|.++. +|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+..  .. ..+..+ +|
T Consensus        99 ~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L  174 (332)
T 2ft3_A           99 SPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KL  174 (332)
T ss_dssp             TTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CC
T ss_pred             hCcCCCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-cc
Confidence            556666666666666652 333222  556666666666654444445566666666666665542  11 122333 45


Q ss_pred             CEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhc
Q 048635          318 NYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRN  397 (562)
Q Consensus       318 ~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~  397 (562)
                      ++|++++|.++            .+|...+   ++|++|++++|.+++..+..+..+++|++|++++|++.+..+..+..
T Consensus       175 ~~L~l~~n~l~------------~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~  239 (332)
T 2ft3_A          175 NYLRISEAKLT------------GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF  239 (332)
T ss_dssp             SCCBCCSSBCS------------SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG
T ss_pred             CEEECcCCCCC------------ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC
Confidence            55555555443            2332211   24455555555554444444445555555555555554444444444


Q ss_pred             CCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEE
Q 048635          398 ASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYAL  477 (562)
Q Consensus       398 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L  477 (562)
                      +++|++|++++|++.                                                  .+|..+..+++|+.|
T Consensus       240 l~~L~~L~L~~N~l~--------------------------------------------------~lp~~l~~l~~L~~L  269 (332)
T 2ft3_A          240 LPTLRELHLDNNKLS--------------------------------------------------RVPAGLPDLKLLQVV  269 (332)
T ss_dssp             CTTCCEEECCSSCCC--------------------------------------------------BCCTTGGGCTTCCEE
T ss_pred             CCCCCEEECCCCcCe--------------------------------------------------ecChhhhcCccCCEE
Confidence            444444444444443                                                  233344555556666


Q ss_pred             eCcCCcCccCcChhccC------CCCCCeeeCCCCccc--ccChhhhcCCCCCCeEeCcCCc
Q 048635          478 NMSHNALTGSIPSSFGN------LKQIESLDLSMNNLS--GKIPAQLASLNFLSVLNLSYNN  531 (562)
Q Consensus       478 ~Ls~n~i~~~~p~~l~~------l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~l~~n~  531 (562)
                      ++++|.+++..+..|..      .+.|+.|++++|.+.  +..|..+..+++|+.+++++|+
T Consensus       270 ~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          270 YLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             ECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            66666655444444433      245666666666665  4556666666667777666663

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=3.4e-31  Score=257.60  Aligned_cols=251  Identities=27%  Similarity=0.423  Sum_probs=200.4

Q ss_pred             CCCCEEEccCCcCCC--CCCCCCcCCCCCcEEEccC-CcccccCCccCCCCCCCCeeeCcCCcccccCC-CCCCCCCCCE
Q 048635          244 SYLQNLNLANTSFSG--ILPDPIGILKYLTRVDLRS-CSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIP-SFHESRNLNY  319 (562)
Q Consensus       244 ~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~  319 (562)
                      .+++.|++++|.+++  .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+.+..+ .+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            457777777777776  6677777777788888874 77777777777777788888888777775444 3567777777


Q ss_pred             EEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCC-CCCEEEcccCCCCCcchHHhhcC
Q 048635          320 LDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCN-MLQVLDFRNNHISDNFPCWLRNA  398 (562)
Q Consensus       320 L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l  398 (562)
                      |++++|.++           +.+|.. +..+++|++|++++|.+++.+|..+..++ +|++|++++|++.+..|..+..+
T Consensus       130 L~Ls~N~l~-----------~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l  197 (313)
T 1ogq_A          130 LDFSYNALS-----------GTLPPS-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL  197 (313)
T ss_dssp             EECCSSEEE-----------SCCCGG-GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred             EeCCCCccC-----------CcCChH-HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC
Confidence            777777654           345554 77778888888888888878888888887 88999999998887788888888


Q ss_pred             CCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEe
Q 048635          399 SSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALN  478 (562)
Q Consensus       399 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~  478 (562)
                      + |++|++++|.+.+..  +..+..+++|++|++++|.+.+.                       . +.+..+++|++|+
T Consensus       198 ~-L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~-----------------------~-~~~~~l~~L~~L~  250 (313)
T 1ogq_A          198 N-LAFVDLSRNMLEGDA--SVLFGSDKNTQKIHLAKNSLAFD-----------------------L-GKVGLSKNLNGLD  250 (313)
T ss_dssp             C-CSEEECCSSEEEECC--GGGCCTTSCCSEEECCSSEECCB-----------------------G-GGCCCCTTCCEEE
T ss_pred             c-ccEEECcCCcccCcC--CHHHhcCCCCCEEECCCCceeee-----------------------c-CcccccCCCCEEE
Confidence            6 999999999888755  77778888999999999888432                       2 2266788999999


Q ss_pred             CcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCc-cee
Q 048635          479 MSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNN-LVG  534 (562)
Q Consensus       479 Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~  534 (562)
                      +++|.+++.+|..|..+++|++|++++|++++.+|.. ..+++|+++++++|+ +.|
T Consensus       251 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             CCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred             CcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence            9999999899999999999999999999999888876 788999999999998 554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=4.5e-29  Score=245.12  Aligned_cols=289  Identities=20%  Similarity=0.225  Sum_probs=205.2

Q ss_pred             CCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCcccccc
Q 048635           77 TNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKAL  156 (562)
Q Consensus        77 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l  156 (562)
                      .++++++++++.++ .+|..+.  ++|++|++++|.+.        ...+..|.++++|++|++++|.++.+.+   ..+
T Consensus        31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~--------~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~   96 (330)
T 1xku_A           31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT--------EIKDGDFKNLKNLHTLILINNKISKISP---GAF   96 (330)
T ss_dssp             EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC--------CBCTTTTTTCTTCCEEECCSSCCCCBCT---TTT
T ss_pred             CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCC--------EeChhhhccCCCCCEEECCCCcCCeeCH---HHh
Confidence            36888888888887 5666553  68888999988753        4445578888899999999888887754   567


Q ss_pred             CCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCC--
Q 048635          157 SFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQ--  234 (562)
Q Consensus       157 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~--  234 (562)
                      ..+++|++|++++|.+... |..+              .++|++|++++|.+++..+..+..+++|+.|++++|.+..  
T Consensus        97 ~~l~~L~~L~Ls~n~l~~l-~~~~--------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  161 (330)
T 1xku_A           97 APLVKLERLYLSKNQLKEL-PEKM--------------PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG  161 (330)
T ss_dssp             TTCTTCCEEECCSSCCSBC-CSSC--------------CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG
T ss_pred             cCCCCCCEEECCCCcCCcc-Chhh--------------cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccC
Confidence            7888899999998887643 2111              1578899999998887777778888889999998887643  


Q ss_pred             CCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCC-CCCC
Q 048635          235 GSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIP-SFHE  313 (562)
Q Consensus       235 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~  313 (562)
                      .....+..+++|++|++++|.++. +|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+.+..+ .+..
T Consensus       162 ~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  238 (330)
T 1xku_A          162 IENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN  238 (330)
T ss_dssp             BCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred             cChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence            333456667888888888888774 344332  778888888888887767778888888888888888776554 4566


Q ss_pred             CCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCC------CCCCCEEEcccCCC
Q 048635          314 SRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLAN------CNMLQVLDFRNNHI  387 (562)
Q Consensus       314 ~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~------l~~L~~L~L~~n~l  387 (562)
                      +++|++|++++|.++            .+|.. +..+++|++|++++|.+++..+..|..      .+.++.|++++|.+
T Consensus       239 l~~L~~L~L~~N~l~------------~lp~~-l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~  305 (330)
T 1xku_A          239 TPHLRELHLNNNKLV------------KVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  305 (330)
T ss_dssp             STTCCEEECCSSCCS------------SCCTT-TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             CCCCCEEECCCCcCc------------cCChh-hccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence            777777777777665            55554 566677777777777777655555543      25666777777766


Q ss_pred             CC--cchHHhhcCCCCCEEEccCcc
Q 048635          388 SD--NFPCWLRNASSLQVLVLRSNN  410 (562)
Q Consensus       388 ~~--~~~~~l~~l~~L~~L~l~~n~  410 (562)
                      ..  ..|..|..+++++.+++++|+
T Consensus       306 ~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          306 QYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CGGGSCGGGGTTCCCGGGEEC----
T ss_pred             cccccCccccccccceeEEEecccC
Confidence            43  345566666667777766663

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=7.7e-34  Score=292.84  Aligned_cols=392  Identities=19%  Similarity=0.177  Sum_probs=214.8

Q ss_pred             CCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCC-ccccccCCCCCCCEEecccCCCCCccchh
Q 048635          101 PRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGT-ERCKALSFLPNLQVLNLSSCLLLGPINHH  179 (562)
Q Consensus       101 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~  179 (562)
                      ++|++|++++|.+.       .......+..+++|++|++++|.++.... .....+..+++|++|++++|.+.+..+..
T Consensus         3 ~~l~~L~Ls~~~l~-------~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~   75 (461)
T 1z7x_W            3 LDIQSLDIQCEELS-------DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHC   75 (461)
T ss_dssp             EEEEEEEEESCCCC-------HHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHH
T ss_pred             ccceehhhhhcccC-------chhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHH
Confidence            56788888888743       11122336778888888888888764321 11245667788888888888876654433


Q ss_pred             cccccCCCCcccccCC-CCCCEEEccCCcCcc----cCChhhhCCCCccEEeccCCCCCCCCCCCC-----CCCCCCCEE
Q 048635          180 LANLRSHSQFFFVANL-LNLTNLDLSQCDLRG----KYPEKILQVSTLETLDLSYNPLLQGSLPNF-----PKNSYLQNL  249 (562)
Q Consensus       180 ~~~l~~~~~~~~l~~l-~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~-----~~~~~L~~L  249 (562)
                      +...        +... .+|++|++++|.++.    .++..+..+++|++|++++|.+.......+     ...++|++|
T Consensus        76 l~~~--------l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L  147 (461)
T 1z7x_W           76 VLQG--------LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKL  147 (461)
T ss_dssp             HHHT--------TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             HHHH--------HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEE
Confidence            3211        1111 168888888888874    446677778888888888876533222211     124467777


Q ss_pred             EccCCcCCCCC----CCCCcCCCCCcEEEccCCcccccCCccCC-----CCCCCCeeeCcCCccccc-----CCCCCCCC
Q 048635          250 NLANTSFSGIL----PDPIGILKYLTRVDLRSCSFTGPIPTSTT-----NLTQLFHVDFSSNHFSGP-----IPSFHESR  315 (562)
Q Consensus       250 ~L~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~~~~~-----~~~~~~~~  315 (562)
                      ++++|.+++..    +..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+.+.     ...+..++
T Consensus       148 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~  227 (461)
T 1z7x_W          148 QLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA  227 (461)
T ss_dssp             ECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCT
T ss_pred             ECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCC
Confidence            77777766532    33445567777777777776643333222     245677777777766542     12234556


Q ss_pred             CCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCccccc----CCccCCCCCCCCEEEcccCCCCCcc
Q 048635          316 NLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGV----VPKSLANCNMLQVLDFRNNHISDNF  391 (562)
Q Consensus       316 ~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~  391 (562)
                      +|++|++++|.++..      .+ ..+....+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+.+..
T Consensus       228 ~L~~L~Ls~n~l~~~------~~-~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~  300 (461)
T 1z7x_W          228 SLRELALGSNKLGDV------GM-AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG  300 (461)
T ss_dssp             TCCEEECCSSBCHHH------HH-HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH
T ss_pred             CccEEeccCCcCChH------HH-HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHH
Confidence            666666666655410      00 011122233455666666666666543    3444555666666666666665433


Q ss_pred             hHHhhc-----CCCCCEEEccCcccceec--CCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccc
Q 048635          392 PCWLRN-----ASSLQVLVLRSNNFSGHI--SYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQA  464 (562)
Q Consensus       392 ~~~l~~-----l~~L~~L~l~~n~l~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  464 (562)
                      +..+..     .++|++|++++|.+++..  .++..+..+++|++|++++|++++..+..+                   
T Consensus       301 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l-------------------  361 (461)
T 1z7x_W          301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL-------------------  361 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHH-------------------
T ss_pred             HHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHH-------------------
Confidence            333322     246666666666655321  012333445666666666665532211111                   


Q ss_pred             cccccC-cCCCCEEeCcCCcCcc----CcChhccCCCCCCeeeCCCCcccccChhhhc-----CCCCCCeEeCcCCcce
Q 048635          465 TEEMGR-FKSLYALNMSHNALTG----SIPSSFGNLKQIESLDLSMNNLSGKIPAQLA-----SLNFLSVLNLSYNNLV  533 (562)
Q Consensus       465 ~~~l~~-l~~L~~L~Ls~n~i~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~~L~l~~n~l~  533 (562)
                      ...+.. .++|++|++++|.+++    .+|..+..+++|++|++++|++++.....+.     ...+|+.|++.++.+.
T Consensus       362 ~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~  440 (461)
T 1z7x_W          362 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  440 (461)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             HHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence            011111 3566666666666654    4555555666666666666666543221111     1234555555555444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=6.1e-34  Score=293.61  Aligned_cols=398  Identities=19%  Similarity=0.155  Sum_probs=222.6

Q ss_pred             CCCCEEecCCccCcccCCcc-CCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCc-ccc
Q 048635           77 TNLTYLNLSHCGFTGEIPTE-ISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTE-RCK  154 (562)
Q Consensus        77 ~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~  154 (562)
                      ++|++|++++|+++...... +..+++|++|++++|.+...    ....++..+..+++|++|++++|.+.+.... ...
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~----~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~   78 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEA----RCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ   78 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHH----HHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHH----HHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHH
Confidence            45677777777776443222 56677777777777764210    0012345566677777777777776543221 111


Q ss_pred             ccCCCC-CCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhC-----CCCccEEecc
Q 048635          155 ALSFLP-NLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQ-----VSTLETLDLS  228 (562)
Q Consensus       155 ~l~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~-----l~~L~~L~L~  228 (562)
                      .+.... +|++|++++|.+.+.....+        +..+..+++|++|++++|.+++..+..+..     .++|++|+++
T Consensus        79 ~l~~~~~~L~~L~L~~n~i~~~~~~~l--------~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~  150 (461)
T 1z7x_W           79 GLQTPSCKIQKLSLQNCCLTGAGCGVL--------SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLE  150 (461)
T ss_dssp             TTCSTTCCCCEEECTTSCCBGGGHHHH--------HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             HHhhCCCceeEEEccCCCCCHHHHHHH--------HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECC
Confidence            122111 57777777777664332222        122455667777777777776444433322     3567777777


Q ss_pred             CCCCCCCCCC----CCCCCCCCCEEEccCCcCCCCCCCCCc-----CCCCCcEEEccCCccccc----CCccCCCCCCCC
Q 048635          229 YNPLLQGSLP----NFPKNSYLQNLNLANTSFSGILPDPIG-----ILKYLTRVDLRSCSFTGP----IPTSTTNLTQLF  295 (562)
Q Consensus       229 ~~~~~~~~~~----~~~~~~~L~~L~L~~n~l~~~~~~~~~-----~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~  295 (562)
                      +|.+......    .+..+++|++|++++|.++...+..+.     ..++|++|++++|.+++.    ++..+..+++|+
T Consensus       151 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  230 (461)
T 1z7x_W          151 YCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR  230 (461)
T ss_dssp             TSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCC
T ss_pred             CCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCcc
Confidence            7765443321    223356777777777776543222222     245677777777777643    344555667777


Q ss_pred             eeeCcCCcccccC-----CC-CCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCc
Q 048635          296 HVDFSSNHFSGPI-----PS-FHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPK  369 (562)
Q Consensus       296 ~L~l~~n~~~~~~-----~~-~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  369 (562)
                      +|++++|.+.+..     +. +..+++|++|++++|.++..      . ...++.. +..+++|++|++++|.+++..+.
T Consensus       231 ~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~------~-~~~l~~~-l~~~~~L~~L~Ls~n~i~~~~~~  302 (461)
T 1z7x_W          231 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAK------G-CGDLCRV-LRAKESLKELSLAGNELGDEGAR  302 (461)
T ss_dssp             EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH------H-HHHHHHH-HHHCTTCCEEECTTCCCHHHHHH
T ss_pred             EEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHH------H-HHHHHHH-HhhCCCcceEECCCCCCchHHHH
Confidence            7777777765421     11 23466777777777766510      0 0012332 44566777777777776543332


Q ss_pred             cCC-----CCCCCCEEEcccCCCCCc----chHHhhcCCCCCEEEccCcccceecC--CCCCCC-CCCCCCEEEcCCCcC
Q 048635          370 SLA-----NCNMLQVLDFRNNHISDN----FPCWLRNASSLQVLVLRSNNFSGHIS--YPRNNV-SWPLLQIVDFASNKF  437 (562)
Q Consensus       370 ~l~-----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~-~~~~L~~L~l~~n~~  437 (562)
                      .+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.+.+...  +...+. ..++|++|++++|.+
T Consensus       303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i  382 (461)
T 1z7x_W          303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV  382 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence            222     235777777777777654    34556667777777777777664320  011111 156777777777776


Q ss_pred             CCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhcc-----CCCCCCeeeCCCCcccccC
Q 048635          438 GGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFG-----NLKQIESLDLSMNNLSGKI  512 (562)
Q Consensus       438 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~-----~l~~L~~L~Ls~n~l~~~~  512 (562)
                      ++..                   ...++..+..+++|++|++++|.+++.....+.     ....|+.|++.++.+....
T Consensus       383 ~~~~-------------------~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~  443 (461)
T 1z7x_W          383 SDSS-------------------CSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM  443 (461)
T ss_dssp             CHHH-------------------HHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred             Chhh-------------------HHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHH
Confidence            3210                   013455566677777777777777643222221     2335666666666655433


Q ss_pred             h
Q 048635          513 P  513 (562)
Q Consensus       513 p  513 (562)
                      +
T Consensus       444 ~  444 (461)
T 1z7x_W          444 E  444 (461)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=5.4e-29  Score=244.70  Aligned_cols=295  Identities=18%  Similarity=0.190  Sum_probs=233.1

Q ss_pred             CCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccC
Q 048635          133 KELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKY  212 (562)
Q Consensus       133 ~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  212 (562)
                      .+++.++++++.++.++..    +  .++|++|++++|.+.+..+..            +.++++|++|++++|.+++..
T Consensus        33 c~l~~l~~~~~~l~~ip~~----~--~~~l~~L~l~~n~i~~~~~~~------------~~~l~~L~~L~L~~n~l~~~~   94 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKE----I--SPDTTLLDLQNNDISELRKDD------------FKGLQHLYALVLVNNKISKIH   94 (332)
T ss_dssp             EETTEEECCSSCCSSCCSC----C--CTTCCEEECCSSCCCEECTTT------------TTTCTTCCEEECCSSCCCEEC
T ss_pred             ccCCEEECCCCCccccCCC----C--CCCCeEEECCCCcCCccCHhH------------hhCCCCCcEEECCCCccCccC
Confidence            3799999999999988752    2  368999999999998765444            456678999999999999888


Q ss_pred             ChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccc--cCCccCCC
Q 048635          213 PEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTG--PIPTSTTN  290 (562)
Q Consensus       213 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~l~~  290 (562)
                      |..+..+++|++|++++|.+.......+   ++|++|++++|.++...+..+..+++|++|++++|.++.  ..+..+..
T Consensus        95 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  171 (332)
T 2ft3_A           95 EKAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG  171 (332)
T ss_dssp             GGGSTTCTTCCEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCS
T ss_pred             HhHhhCcCCCCEEECCCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccC
Confidence            9999999999999999998764332222   789999999999997777778999999999999999963  56777777


Q ss_pred             CCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCcc
Q 048635          291 LTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKS  370 (562)
Q Consensus       291 l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  370 (562)
                      + +|++|++++|.+.+....+  .++|++|++++|.++            .++...+..+++|+.|++++|.+++..+.+
T Consensus       172 l-~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~i~------------~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~  236 (332)
T 2ft3_A          172 L-KLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQ------------AIELEDLLRYSKLYRLGLGHNQIRMIENGS  236 (332)
T ss_dssp             C-CCSCCBCCSSBCSSCCSSS--CSSCSCCBCCSSCCC------------CCCTTSSTTCTTCSCCBCCSSCCCCCCTTG
T ss_pred             C-ccCEEECcCCCCCccCccc--cCCCCEEECCCCcCC------------ccCHHHhcCCCCCCEEECCCCcCCcCChhH
Confidence            7 9999999999998754443  378999999999887            455445888999999999999999888888


Q ss_pred             CCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhh
Q 048635          371 LANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLG  450 (562)
Q Consensus       371 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  450 (562)
                      +..+++|++|++++|+++. +|..+..+++|++|++++|.++...  +..+....                         
T Consensus       237 ~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N~l~~~~--~~~~~~~~-------------------------  288 (332)
T 2ft3_A          237 LSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVG--VNDFCPVG-------------------------  288 (332)
T ss_dssp             GGGCTTCCEEECCSSCCCB-CCTTGGGCTTCCEEECCSSCCCBCC--TTSSSCSS-------------------------
T ss_pred             hhCCCCCCEEECCCCcCee-cChhhhcCccCCEEECCCCCCCccC--hhHccccc-------------------------
Confidence            9999999999999999985 6777899999999999999988654  22222110                         


Q ss_pred             hhhhhhhCCCcccccccccCcCCCCEEeCcCCcCc--cCcChhccCCCCCCeeeCCCCc
Q 048635          451 MRYQATNKRCRDQATEEMGRFKSLYALNMSHNALT--GSIPSSFGNLKQIESLDLSMNN  507 (562)
Q Consensus       451 l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~--~~~p~~l~~l~~L~~L~Ls~n~  507 (562)
                                    +  ....+.|+.|++++|.+.  +..|..|..+++|+.+++++|+
T Consensus       289 --------------~--~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          289 --------------F--GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             --------------C--CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             --------------c--ccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence                          0  011345666777777665  4556667777777777777764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=3.6e-31  Score=281.81  Aligned_cols=386  Identities=12%  Similarity=0.035  Sum_probs=208.1

Q ss_pred             CCCCCCEEecCCccCcccCCccCCC-CC-CCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCcc
Q 048635           75 NLTNLTYLNLSHCGFTGEIPTEISS-LP-RLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTER  152 (562)
Q Consensus        75 ~l~~L~~L~Ls~n~i~~~~~~~~~~-l~-~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~  152 (562)
                      .+++|++|+|++|.+++..+..+.. ++ +|++|++++|...      .....+....++++|++|++++|.+++.+..+
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~------~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~  183 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF------TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW  183 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE------EHHHHHHHHHHCTTCSEEECTTCEEECCCSHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCc------CHHHHHHHHhhCCCCCEEECccccccCcchhH
Confidence            5677777777777766555554544 33 3777777776410      00111222346777777777777765544321


Q ss_pred             c-cccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCC
Q 048635          153 C-KALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNP  231 (562)
Q Consensus       153 ~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~  231 (562)
                      . ..+..+++|++|++++|.+.+.....+..        .+.++++|++|++++|.+.+ ++..+..+++|+.|+++...
T Consensus       184 l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~--------~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~  254 (592)
T 3ogk_B          184 LHELAQHNTSLEVLNFYMTEFAKISPKDLET--------IARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLN  254 (592)
T ss_dssp             HHHHHHHCCCCCEEECTTCCCSSCCHHHHHH--------HHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCC
T ss_pred             HHHHHhcCCCccEEEeeccCCCccCHHHHHH--------HHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccc
Confidence            1 22346677777777777765433333321        24456677777777777763 55666777777777776432


Q ss_pred             CC---CCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCC-ccCCCCCCCCeeeCcCCccccc
Q 048635          232 LL---QGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIP-TSTTNLTQLFHVDFSSNHFSGP  307 (562)
Q Consensus       232 ~~---~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~  307 (562)
                      ..   ......+..+++|+.|+++++.. ..+|..+..+++|++|++++|.+++... ..+..+++|++|+++++...+.
T Consensus       255 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~  333 (592)
T 3ogk_B          255 EDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRG  333 (592)
T ss_dssp             CCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHH
T ss_pred             cccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHH
Confidence            11   11122344466777777766432 2345555666777777777776553322 2345667777777763221111


Q ss_pred             CCCC-CCCCCCCEEEcCC-----------CCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCC-C
Q 048635          308 IPSF-HESRNLNYLDLSS-----------NNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLAN-C  374 (562)
Q Consensus       308 ~~~~-~~~~~L~~L~l~~-----------n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-l  374 (562)
                      .+.+ ..+++|++|++++           +.++           +.........+++|+.|+++.+.+++..+..+.. +
T Consensus       334 l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~  402 (592)
T 3ogk_B          334 LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS-----------QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYL  402 (592)
T ss_dssp             HHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCC-----------HHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHC
T ss_pred             HHHHHHhCCCCCEEEeecCccccccccccCccC-----------HHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhC
Confidence            2222 4456677777762           2222           1111111334556667666666665544444433 6


Q ss_pred             CCCCEEEcc----cCCCCCc-----chHHhhcCCCCCEEEccCcc--cceecCCCCCC-CCCCCCCEEEcCCCcCCCcCC
Q 048635          375 NMLQVLDFR----NNHISDN-----FPCWLRNASSLQVLVLRSNN--FSGHISYPRNN-VSWPLLQIVDFASNKFGGRLS  442 (562)
Q Consensus       375 ~~L~~L~L~----~n~l~~~-----~~~~l~~l~~L~~L~l~~n~--l~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~  442 (562)
                      ++|++|+++    .|.+++.     ++..+..+++|++|+++.|.  +++..  ...+ ..+++|++|++++|++++.  
T Consensus       403 ~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~--~~~~~~~~~~L~~L~L~~n~l~~~--  478 (592)
T 3ogk_B          403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG--LSYIGQYSPNVRWMLLGYVGESDE--  478 (592)
T ss_dssp             CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH--HHHHHHSCTTCCEEEECSCCSSHH--
T ss_pred             CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH--HHHHHHhCccceEeeccCCCCCHH--
Confidence            666677665    4455542     33335556667777665432  32211  1111 2356666666666665321  


Q ss_pred             hhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccC-cChhccCCCCCCeeeCCCCccccc
Q 048635          443 QKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGS-IPSSFGNLKQIESLDLSMNNLSGK  511 (562)
Q Consensus       443 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~-~p~~l~~l~~L~~L~Ls~n~l~~~  511 (562)
                                          .++..+..+++|+.|++++|.+++. ++..+..+++|++|++++|++++.
T Consensus       479 --------------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          479 --------------------GLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             --------------------HHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             --------------------HHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence                                1122234556666677766666533 233334566666677766666643

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=3.3e-28  Score=241.26  Aligned_cols=276  Identities=20%  Similarity=0.220  Sum_probs=176.3

Q ss_pred             EEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCc
Q 048635          200 NLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCS  279 (562)
Q Consensus       200 ~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~  279 (562)
                      ..+.+++.++ .+|..+.  ++|++|++++|.+.......+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus        35 ~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  111 (353)
T 2z80_A           35 ICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY  111 (353)
T ss_dssp             EEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence            3455555555 3344332  356666666666544444455566666666666666666656667777777777777777


Q ss_pred             ccccCCccCCCCCCCCeeeCcCCcccccCC--CCCCCCCCCEEEcCCCC-CcceEECCCCcCcccCCccccCCCCCcCEE
Q 048635          280 FTGPIPTSTTNLTQLFHVDFSSNHFSGPIP--SFHESRNLNYLDLSSNN-LNGVLNLGRNNLNGTLSDIIFPRNCGLHIL  356 (562)
Q Consensus       280 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~L~l~~n~-l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L  356 (562)
                      +++..+..+..+++|++|++++|.+.+...  .+..+++|++|++++|. +.            .++...+.++++|++|
T Consensus       112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~------------~~~~~~~~~l~~L~~L  179 (353)
T 2z80_A          112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT------------KIQRKDFAGLTFLEEL  179 (353)
T ss_dssp             CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC------------EECTTTTTTCCEEEEE
T ss_pred             CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc------------ccCHHHccCCCCCCEE
Confidence            764444446677777777777777765443  45677777877777773 33            4444447788889999


Q ss_pred             ECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCC---CCCCCCCCEEEcC
Q 048635          357 DLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRN---NVSWPLLQIVDFA  433 (562)
Q Consensus       357 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~---~~~~~~L~~L~l~  433 (562)
                      ++++|.+++..|..+..+++|++|++++|++.......+..+++|++|++++|.+.+..  +..   ....+.++.++++
T Consensus       180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~l~~~~~~~~l~~l~L~  257 (353)
T 2z80_A          180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH--FSELSTGETNSLIKKFTFR  257 (353)
T ss_dssp             EEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCC--CC------CCCCCCEEEEE
T ss_pred             ECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccc--ccccccccccchhhccccc
Confidence            99999988888888989999999999999987755555667889999999999887543  211   1234556666666


Q ss_pred             CCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChh-ccCCCCCCeeeCCCCcccccC
Q 048635          434 SNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSS-FGNLKQIESLDLSMNNLSGKI  512 (562)
Q Consensus       434 ~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~  512 (562)
                      ++.+.+..                   ...+|+.+..+++|++|++++|.++ .+|.. |..+++|++|++++|++++..
T Consensus       258 ~~~l~~~~-------------------l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          258 NVKITDES-------------------LFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             SCBCCHHH-------------------HHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             cccccCcc-------------------hhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence            66553211                   0123444555666666666666666 33333 456666666666666666433

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=1e-28  Score=241.54  Aligned_cols=250  Identities=24%  Similarity=0.242  Sum_probs=153.4

Q ss_pred             CCCCCC----CCCCCCCCcceeeeCC---------CCCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCE
Q 048635           15 AKMSQW----SDSTNCCDWTGVDCDE---------AGHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTY   81 (562)
Q Consensus        15 ~~~~~w----~~~~~~c~w~g~~c~~---------~~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~   81 (562)
                      +....|    ....++|.|.|+.|..         ..+|+.|+++++ .+. .+              |..+.++++|++
T Consensus        45 ~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n-~l~-~l--------------p~~l~~l~~L~~  108 (328)
T 4fcg_A           45 RWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV-PLP-QF--------------PDQAFRLSHLQH  108 (328)
T ss_dssp             THHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESS-CCS-SC--------------CSCGGGGTTCSE
T ss_pred             hhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCC-Cch-hc--------------ChhhhhCCCCCE
Confidence            344567    3467889999998842         256777777777 444 22              445666777777


Q ss_pred             EecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCcccc------c
Q 048635           82 LNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCK------A  155 (562)
Q Consensus        82 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~------~  155 (562)
                      |++++|.++ .+|..++++++|++|++++|.+        . .+|..+.++++|++|++++|++....+....      .
T Consensus       109 L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l--------~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~  178 (328)
T 4fcg_A          109 MTIDAAGLM-ELPDTMQQFAGLETLTLARNPL--------R-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE  178 (328)
T ss_dssp             EEEESSCCC-CCCSCGGGGTTCSEEEEESCCC--------C-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred             EECCCCCcc-chhHHHhccCCCCEEECCCCcc--------c-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence            777777777 6777777777777777777764        2 4466677777777777777654333221111      1


Q ss_pred             cCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCC
Q 048635          156 LSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQG  235 (562)
Q Consensus       156 l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~  235 (562)
                      +..+++|++|++++|.++ .+|..            +..+++|++|++++|.++ .+|..+..+++|+.|++++|.+...
T Consensus       179 ~~~l~~L~~L~L~~n~l~-~lp~~------------l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~  244 (328)
T 4fcg_A          179 HQGLVNLQSLRLEWTGIR-SLPAS------------IANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRN  244 (328)
T ss_dssp             EEESTTCCEEEEEEECCC-CCCGG------------GGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCB
T ss_pred             hccCCCCCEEECcCCCcC-cchHh------------hcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhh
Confidence            233666666666666655 22222            334455666666666666 3444566666666666666655444


Q ss_pred             CCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcc
Q 048635          236 SLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHF  304 (562)
Q Consensus       236 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  304 (562)
                      ....+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..++++++++.+++..+.+
T Consensus       245 ~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          245 YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            444555566666666666666656666666666666666666666666666666666666666555443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.4e-27  Score=231.81  Aligned_cols=282  Identities=20%  Similarity=0.208  Sum_probs=182.3

Q ss_pred             cEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCccccc--CCccCCCCCCCCeeeCc
Q 048635          223 ETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGP--IPTSTTNLTQLFHVDFS  300 (562)
Q Consensus       223 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~  300 (562)
                      +.++++++.+..... .+  .+++++|++++|.++...+..+..+++|++|++++|.++..  .+..+..+++|++|+++
T Consensus        10 ~~l~c~~~~l~~ip~-~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLTSVPT-GI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCSSCCS-CC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCcccCCC-CC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            456666665433222 11  35678888888887755555567778888888888877632  24455567778888888


Q ss_pred             CCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCc-cccCCCCCcCEEECcCCcccccCCccCCCCCCCCE
Q 048635          301 SNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSD-IIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQV  379 (562)
Q Consensus       301 ~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  379 (562)
                      +|.+.+....+..+++|++|++++|.++            .++. ..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus        87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  154 (306)
T 2z66_A           87 FNGVITMSSNFLGLEQLEHLDFQHSNLK------------QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV  154 (306)
T ss_dssp             SCSEEEEEEEEETCTTCCEEECTTSEEE------------SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred             CCccccChhhcCCCCCCCEEECCCCccc------------ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence            8777765555666777777777777665            3332 33666777777777777777666677777777777


Q ss_pred             EEcccCCCCC-cchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhC
Q 048635          380 LDFRNNHISD-NFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNK  458 (562)
Q Consensus       380 L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~  458 (562)
                      |++++|.+.+ ..|..+..+++|++|++++|.+.+..  +..+..+++|++|++++|++.                    
T Consensus       155 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~--------------------  212 (306)
T 2z66_A          155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS--PTAFNSLSSLQVLNMSHNNFF--------------------  212 (306)
T ss_dssp             EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTSCCS--------------------
T ss_pred             EECCCCccccccchhHHhhCcCCCEEECCCCCcCCcC--HHHhcCCCCCCEEECCCCccC--------------------
Confidence            7777777765 45666777777777777777776654  566667777777777777763                    


Q ss_pred             CCcccccccccCcCCCCEEeCcCCcCccCcChhccCCC-CCCeeeCCCCcccccCh--hhhcCCCCCCeEeCcCCcceec
Q 048635          459 RCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLK-QIESLDLSMNNLSGKIP--AQLASLNFLSVLNLSYNNLVGQ  535 (562)
Q Consensus       459 ~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~l~~n~l~~~  535 (562)
                         +..+..+..+++|+.|++++|.+++..|..+..++ +|++|++++|++++..+  ....-+...+.+.+..+.+.+.
T Consensus       213 ---~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~  289 (306)
T 2z66_A          213 ---SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECA  289 (306)
T ss_dssp             ---BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEE
T ss_pred             ---ccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccC
Confidence               22233456667777777777777766666666663 77777777777764321  1122233445555666666666


Q ss_pred             CCCCCCCCc
Q 048635          536 IPTAKHVLP  544 (562)
Q Consensus       536 ~p~~~~~~~  544 (562)
                      .|+..+-.+
T Consensus       290 ~p~~~~g~~  298 (306)
T 2z66_A          290 TPSDKQGMP  298 (306)
T ss_dssp             ESGGGTTCB
T ss_pred             CchhhCCce
Confidence            665544433

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.2e-27  Score=232.24  Aligned_cols=246  Identities=26%  Similarity=0.310  Sum_probs=124.3

Q ss_pred             EEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCccccc---CCCCCCCCCCCEEEcCC
Q 048635          248 NLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGP---IPSFHESRNLNYLDLSS  324 (562)
Q Consensus       248 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~---~~~~~~~~~L~~L~l~~  324 (562)
                      .++.+++.++. +|..+  .+++++|++++|.+++..+..+..+++|++|++++|.+...   ...+..+++|++|++++
T Consensus        11 ~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           11 EIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             EEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             EEEcCCCCccc-CCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence            44555544442 23222  23455555555555533333345555555555555555432   12223445555555555


Q ss_pred             CCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCC-ccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCE
Q 048635          325 NNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVP-KSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQV  403 (562)
Q Consensus       325 n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  403 (562)
                      |.+.            .+|.. +..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus        88 n~i~------------~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  154 (306)
T 2z66_A           88 NGVI------------TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV  154 (306)
T ss_dssp             CSEE------------EEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred             Cccc------------cChhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence            5544            23332 4445555555555555554333 34555555555555555555544555555555555


Q ss_pred             EEccCcccce-ecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCC
Q 048635          404 LVLRSNNFSG-HISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHN  482 (562)
Q Consensus       404 L~l~~n~l~~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n  482 (562)
                      |++++|.+.+ ..  +..+..+++|++|++++|.+.                       +..+..+..+++|++|++++|
T Consensus       155 L~l~~n~l~~~~~--~~~~~~l~~L~~L~Ls~n~l~-----------------------~~~~~~~~~l~~L~~L~L~~N  209 (306)
T 2z66_A          155 LKMAGNSFQENFL--PDIFTELRNLTFLDLSQCQLE-----------------------QLSPTAFNSLSSLQVLNMSHN  209 (306)
T ss_dssp             EECTTCEEGGGEE--CSCCTTCTTCCEEECTTSCCC-----------------------EECTTTTTTCTTCCEEECTTS
T ss_pred             EECCCCccccccc--hhHHhhCcCCCEEECCCCCcC-----------------------CcCHHHhcCCCCCCEEECCCC
Confidence            5555555543 22  444555555555555555552                       222334445555555555555


Q ss_pred             cCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCC-CCCeEeCcCCccee
Q 048635          483 ALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLN-FLSVLNLSYNNLVG  534 (562)
Q Consensus       483 ~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~l~~n~l~~  534 (562)
                      .+++..+..+..+++|+.|++++|++++..|..+..++ +|++|++++|++.+
T Consensus       210 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          210 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             CCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             ccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            55544444555555555555555555555555555553 55555555555553

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=6e-31  Score=280.04  Aligned_cols=425  Identities=11%  Similarity=0.047  Sum_probs=293.0

Q ss_pred             cccCCCCCCCEEecCCccC---cccCCccCC------------CCCCCcEEeCCCCCCCCCCCccccCCCcccccC-CC-
Q 048635           71 FGLANLTNLTYLNLSHCGF---TGEIPTEIS------------SLPRLVTLDLSSREPISGFSWRLGIPNFNFFQN-LK-  133 (562)
Q Consensus        71 ~~l~~l~~L~~L~Ls~n~i---~~~~~~~~~------------~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~-l~-  133 (562)
                      ..+.++++|++|+++++..   .+.+|..++            .+++|++|++++|.+.        ...+..+.. ++ 
T Consensus        67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~--------~~~~~~l~~~~~~  138 (592)
T 3ogk_B           67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVS--------DLDLDRLAKARAD  138 (592)
T ss_dssp             HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCC--------HHHHHHHHHHHGG
T ss_pred             HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEec--------HHHHHHHHHhccc
Confidence            3466788999999988642   123443343            7899999999999742        333444544 34 


Q ss_pred             CCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCc----
Q 048635          134 ELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLR----  209 (562)
Q Consensus       134 ~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~----  209 (562)
                      +|++|++++|.... ..........+++|++|++++|.+.+.....+..        ....+++|++|++++|.++    
T Consensus       139 ~L~~L~L~~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~--------~~~~~~~L~~L~L~~n~~~~~~~  209 (592)
T 3ogk_B          139 DLETLKLDKCSGFT-TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE--------LAQHNTSLEVLNFYMTEFAKISP  209 (592)
T ss_dssp             GCCEEEEESCEEEE-HHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH--------HHHHCCCCCEEECTTCCCSSCCH
T ss_pred             cCcEEECcCCCCcC-HHHHHHHHhhCCCCCEEECccccccCcchhHHHH--------HHhcCCCccEEEeeccCCCccCH
Confidence            49999999886211 1111122347899999999999886654332222        2456788999999999987    


Q ss_pred             ccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCC---CCCCCCCcCCCCCcEEEccCCcccccCCc
Q 048635          210 GKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFS---GILPDPIGILKYLTRVDLRSCSFTGPIPT  286 (562)
Q Consensus       210 ~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~---~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  286 (562)
                      ..++..+..+++|+.|++++|.+.. ....+..+++|++|+++.....   ...+..+..+++|+.++++++... .++.
T Consensus       210 ~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~  287 (592)
T 3ogk_B          210 KDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPI  287 (592)
T ss_dssp             HHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGG
T ss_pred             HHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHH
Confidence            3444555678999999999986533 2234555889999999864322   233456678889999999886433 5677


Q ss_pred             cCCCCCCCCeeeCcCCcccccCC--CCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcC----
Q 048635          287 STTNLTQLFHVDFSSNHFSGPIP--SFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSG----  360 (562)
Q Consensus       287 ~l~~l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~----  360 (562)
                      .+..+++|++|++++|.+.+...  .+..+++|++|+++ +.+.           +.........+++|++|++++    
T Consensus       288 ~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~-----------~~~l~~~~~~~~~L~~L~L~~g~~~  355 (592)
T 3ogk_B          288 LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIG-----------DRGLEVLAQYCKQLKRLRIERGADE  355 (592)
T ss_dssp             GGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGH-----------HHHHHHHHHHCTTCCEEEEECCCCS
T ss_pred             HHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccC-----------HHHHHHHHHhCCCCCEEEeecCccc
Confidence            77889999999999998754322  24778999999998 3332           111222245677899999993    


Q ss_pred             -------CcccccC-CccCCCCCCCCEEEcccCCCCCcchHHhhc-CCCCCEEEcc----Ccccceec---CCCCCCCCC
Q 048635          361 -------NQLQGVV-PKSLANCNMLQVLDFRNNHISDNFPCWLRN-ASSLQVLVLR----SNNFSGHI---SYPRNNVSW  424 (562)
Q Consensus       361 -------n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~l~----~n~l~~~~---~~~~~~~~~  424 (562)
                             +.+++.. +.....+++|++|+++.+.+++..+..+.. +++|++|+++    .|.+++..   .++..+..+
T Consensus       356 ~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~  435 (592)
T 3ogk_B          356 QGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC  435 (592)
T ss_dssp             STTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHC
T ss_pred             cccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhC
Confidence                   4555432 222345899999999999998877777765 9999999996    55565321   011224568


Q ss_pred             CCCCEEEcCCCc--CCCcCChhhhhhhhhhhhhhhCCCcccccccc-cCcCCCCEEeCcCCcCccC-cChhccCCCCCCe
Q 048635          425 PLLQIVDFASNK--FGGRLSQKCSTTLGMRYQATNKRCRDQATEEM-GRFKSLYALNMSHNALTGS-IPSSFGNLKQIES  500 (562)
Q Consensus       425 ~~L~~L~l~~n~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l-~~l~~L~~L~Ls~n~i~~~-~p~~l~~l~~L~~  500 (562)
                      ++|++|++++|.  +++                       ..+..+ ..+++|++|++++|++++. ++..+..+++|++
T Consensus       436 ~~L~~L~L~~~~~~l~~-----------------------~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~  492 (592)
T 3ogk_B          436 KKLRRFAFYLRQGGLTD-----------------------LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQK  492 (592)
T ss_dssp             TTCCEEEEECCGGGCCH-----------------------HHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCE
T ss_pred             CCCCEEEEecCCCCccH-----------------------HHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCe
Confidence            999999998654  422                       222223 3478999999999999863 4555688999999


Q ss_pred             eeCCCCccccc-ChhhhcCCCCCCeEeCcCCcceecCCC-CCCCCccccch
Q 048635          501 LDLSMNNLSGK-IPAQLASLNFLSVLNLSYNNLVGQIPT-AKHVLPNFNLH  549 (562)
Q Consensus       501 L~Ls~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~p~-~~~~~~~l~~~  549 (562)
                      |++++|.+++. ++..+..+++|++|++++|+++..-.. ....++.+++.
T Consensus       493 L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~  543 (592)
T 3ogk_B          493 LEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIE  543 (592)
T ss_dssp             EEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEE
T ss_pred             eeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEE
Confidence            99999998764 455567899999999999998755222 23344544443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=5.5e-27  Score=225.16  Aligned_cols=270  Identities=20%  Similarity=0.168  Sum_probs=188.0

Q ss_pred             CEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccC-CCCCCCCCCCEEEcCCC
Q 048635          247 QNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPI-PSFHESRNLNYLDLSSN  325 (562)
Q Consensus       247 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~~~L~~L~l~~n  325 (562)
                      +.++.+++.++. +|..  ..++|++|++++|.+++..+..+..+++|++|++++|.+.+.. ..+..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~~-ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQA-VPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSS-CCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCccc-CCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            345555555542 2322  2345666666666666555555666666666666666666543 24566666777777666


Q ss_pred             C-CcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEE
Q 048635          326 N-LNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVL  404 (562)
Q Consensus       326 ~-l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  404 (562)
                      . +.            .++...+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..+..+..+++|++|
T Consensus        91 ~~l~------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  158 (285)
T 1ozn_A           91 AQLR------------SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL  158 (285)
T ss_dssp             TTCC------------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCcc------------ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEE
Confidence            5 43            4433347777788888888888887777788888888888888888888666678888888888


Q ss_pred             EccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcC
Q 048635          405 VLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNAL  484 (562)
Q Consensus       405 ~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i  484 (562)
                      ++++|.+.+..  +..+..+++|++|++++|.+.                       +..+..+..+++|+.|++++|.+
T Consensus       159 ~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~-----------------------~~~~~~~~~l~~L~~L~l~~n~l  213 (285)
T 1ozn_A          159 FLHGNRISSVP--ERAFRGLHSLDRLLLHQNRVA-----------------------HVHPHAFRDLGRLMTLYLFANNL  213 (285)
T ss_dssp             ECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCC-----------------------EECTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCcccccC--HHHhcCccccCEEECCCCccc-----------------------ccCHhHccCcccccEeeCCCCcC
Confidence            88888888665  556778888888888888873                       44466678888999999999999


Q ss_pred             ccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceecCCCCCCCCccccchHHHHhhhhhcCCC
Q 048635          485 TGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKHVLPNFNLHRRQLQAMKLIGSS  562 (562)
Q Consensus       485 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~l~~l~~~~~~  562 (562)
                      ++..+..+..+++|+.|++++|.+....+.. .....++.+..+.+.+.+..|....-..     ..+++...+.||+
T Consensus       214 ~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~~-----l~~l~~~~l~~C~  285 (285)
T 1ozn_A          214 SALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRD-----LKRLAANDLQGCA  285 (285)
T ss_dssp             SCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTCB-----GGGSCGGGSCCC-
T ss_pred             CcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCCcC-----hhhcCHHHhccCC
Confidence            9766677889999999999999988543321 1123455666778888888887654433     2345566677774

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=2.4e-26  Score=235.61  Aligned_cols=246  Identities=19%  Similarity=0.168  Sum_probs=165.4

Q ss_pred             CEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccC-CCCCCCCCCCEEEcCCC
Q 048635          247 QNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPI-PSFHESRNLNYLDLSSN  325 (562)
Q Consensus       247 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~~~L~~L~l~~n  325 (562)
                      ..++.++..++. +|..+  .+++++|++++|.+++..+..+..+++|++|++++|.+.+.. ..+..+++|++|++++|
T Consensus        57 ~~v~c~~~~l~~-iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  133 (452)
T 3zyi_A           57 SKVVCTRRGLSE-VPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN  133 (452)
T ss_dssp             CEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             cEEEECCCCcCc-cCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence            445555554442 33322  245666666666666555566666666666666666666544 23456666666666666


Q ss_pred             CCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccC-CCCCcchHHhhcCCCCCEE
Q 048635          326 NLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNN-HISDNFPCWLRNASSLQVL  404 (562)
Q Consensus       326 ~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L  404 (562)
                      .++            .++...|..+++|++|++++|.+++..+..+..+++|++|++++| .+....+..|..+++|++|
T Consensus       134 ~l~------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L  201 (452)
T 3zyi_A          134 WLT------------VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL  201 (452)
T ss_dssp             CCS------------BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred             cCC------------ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence            655            455555666777777777777777666666777777777777774 3444334456777777777


Q ss_pred             EccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcC
Q 048635          405 VLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNAL  484 (562)
Q Consensus       405 ~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i  484 (562)
                      ++++|.+.+.    ..+..+++|++|++++|.+.                       +..+..+..+++|+.|++++|.+
T Consensus       202 ~L~~n~l~~~----~~~~~l~~L~~L~Ls~N~l~-----------------------~~~~~~~~~l~~L~~L~L~~n~l  254 (452)
T 3zyi_A          202 NLGMCNIKDM----PNLTPLVGLEELEMSGNHFP-----------------------EIRPGSFHGLSSLKKLWVMNSQV  254 (452)
T ss_dssp             ECTTSCCSSC----CCCTTCTTCCEEECTTSCCS-----------------------EECGGGGTTCTTCCEEECTTSCC
T ss_pred             ECCCCccccc----ccccccccccEEECcCCcCc-----------------------ccCcccccCccCCCEEEeCCCcC
Confidence            7777777643    24567777888888888773                       34455677778888888888888


Q ss_pred             ccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCccee
Q 048635          485 TGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVG  534 (562)
Q Consensus       485 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~  534 (562)
                      ++..|..|..+++|+.|+|++|++++..++.+..+++|++|++++|++..
T Consensus       255 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          255 SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             ceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            87777778888888888888888887666777778888888888887654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=2.9e-26  Score=234.21  Aligned_cols=226  Identities=22%  Similarity=0.200  Sum_probs=118.6

Q ss_pred             CCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccC-CCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCcccc
Q 048635          269 YLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPI-PSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIF  347 (562)
Q Consensus       269 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~  347 (562)
                      +++.|++++|.+++..+..+.++++|++|++++|.+.+.. ..+..+++|++|++++|.++            .++...|
T Consensus        65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~------------~~~~~~~  132 (440)
T 3zyj_A           65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT------------TIPNGAF  132 (440)
T ss_dssp             TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS------------SCCTTTS
T ss_pred             CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC------------eeCHhHh
Confidence            3444444444444444444444444444444444444322 12344444555555544443            3333335


Q ss_pred             CCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCC-CCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCC
Q 048635          348 PRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNH-ISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPL  426 (562)
Q Consensus       348 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~  426 (562)
                      ..+++|++|++++|.++...+..+..+++|++|++++|. +....+..|..+++|++|++++|.+...   + .+..+++
T Consensus       133 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---~-~~~~l~~  208 (440)
T 3zyj_A          133 VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI---P-NLTPLIK  208 (440)
T ss_dssp             CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC---C-CCTTCSS
T ss_pred             hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc---c-ccCCCcc
Confidence            555555555555555554444455555555555555532 3332233455555566666655555532   1 3445556


Q ss_pred             CCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCC
Q 048635          427 LQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMN  506 (562)
Q Consensus       427 L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n  506 (562)
                      |++|++++|+++                       +..+..+..+++|+.|++++|.+++..+..|..+++|+.|+|++|
T Consensus       209 L~~L~Ls~N~l~-----------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  265 (440)
T 3zyj_A          209 LDELDLSGNHLS-----------------------AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN  265 (440)
T ss_dssp             CCEEECTTSCCC-----------------------EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred             cCEEECCCCccC-----------------------ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence            666666666552                       233444555666666666666666555556666666666666666


Q ss_pred             cccccChhhhcCCCCCCeEeCcCCcce
Q 048635          507 NLSGKIPAQLASLNFLSVLNLSYNNLV  533 (562)
Q Consensus       507 ~l~~~~p~~l~~l~~L~~L~l~~n~l~  533 (562)
                      ++++..++.+..+++|++|++++|++.
T Consensus       266 ~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          266 NLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CCCccChhHhccccCCCEEEcCCCCcc
Confidence            666555555566666666666666654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=5.2e-27  Score=229.38  Aligned_cols=235  Identities=17%  Similarity=0.161  Sum_probs=164.3

Q ss_pred             CCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEc
Q 048635          243 NSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDL  322 (562)
Q Consensus       243 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l  322 (562)
                      .+.++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.+...+..+..+++|++|++
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI  157 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence            356777888887777 55666777777888888877777 6677777777777777777777644334556666666666


Q ss_pred             CCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCC
Q 048635          323 SSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQ  402 (562)
Q Consensus       323 ~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  402 (562)
                      ++|.+.           +.+|... .      ..         ..+..+..+++|++|++++|+++. +|..+..+++|+
T Consensus       158 ~~n~~~-----------~~~p~~~-~------~~---------~~~~~~~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~  209 (328)
T 4fcg_A          158 RACPEL-----------TELPEPL-A------ST---------DASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLK  209 (328)
T ss_dssp             EEETTC-----------CCCCSCS-E------EE---------C-CCCEEESTTCCEEEEEEECCCC-CCGGGGGCTTCC
T ss_pred             CCCCCc-----------cccChhH-h------hc---------cchhhhccCCCCCEEECcCCCcCc-chHhhcCCCCCC
Confidence            655432           2333321 0      00         011123347777777777777773 566677777777


Q ss_pred             EEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCC
Q 048635          403 VLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHN  482 (562)
Q Consensus       403 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n  482 (562)
                      +|++++|.+.+.   +..+..+++|++|++++|++.                       +.+|..+..+++|+.|++++|
T Consensus       210 ~L~L~~N~l~~l---~~~l~~l~~L~~L~Ls~n~~~-----------------------~~~p~~~~~l~~L~~L~L~~n  263 (328)
T 4fcg_A          210 SLKIRNSPLSAL---GPAIHHLPKLEELDLRGCTAL-----------------------RNYPPIFGGRAPLKRLILKDC  263 (328)
T ss_dssp             EEEEESSCCCCC---CGGGGGCTTCCEEECTTCTTC-----------------------CBCCCCTTCCCCCCEEECTTC
T ss_pred             EEEccCCCCCcC---chhhccCCCCCEEECcCCcch-----------------------hhhHHHhcCCCCCCEEECCCC
Confidence            777777777642   445677777888888777763                       455666777888888888888


Q ss_pred             cCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcce
Q 048635          483 ALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV  533 (562)
Q Consensus       483 ~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~  533 (562)
                      .+.+.+|..+..+++|++|+|++|++.+.+|+.+.++++|+.+++..+.+.
T Consensus       264 ~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          264 SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             TTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            888888888888888888888888888888888888888888888877654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=1.7e-28  Score=239.11  Aligned_cols=251  Identities=19%  Similarity=0.216  Sum_probs=199.5

Q ss_pred             CCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEc
Q 048635          243 NSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDL  322 (562)
Q Consensus       243 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l  322 (562)
                      +++|++|++++|.+++..|..+..+++|++|++++|.+++..+  +..+++|++|++++|.+.+..    ..++|++|++
T Consensus        33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l  106 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----VGPSIETLHA  106 (317)
T ss_dssp             GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE----ECTTCCEEEC
T ss_pred             CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc----CCCCcCEEEC
Confidence            4566666776766666655667777788888888887775443  777788888888888877543    2378888888


Q ss_pred             CCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHh-hcCCCC
Q 048635          323 SSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWL-RNASSL  401 (562)
Q Consensus       323 ~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L  401 (562)
                      ++|.++            .++   ...+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+..+ ..+++|
T Consensus       107 ~~n~l~------------~~~---~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L  171 (317)
T 3o53_A          107 ANNNIS------------RVS---CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL  171 (317)
T ss_dssp             CSSCCS------------EEE---ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred             CCCccC------------CcC---ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcC
Confidence            888776            222   2235679999999999998878888899999999999999998777666 478999


Q ss_pred             CEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcC
Q 048635          402 QVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSH  481 (562)
Q Consensus       402 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~  481 (562)
                      ++|++++|.+.+..    ....+++|++|++++|+++                        .+++.+..+++|+.|++++
T Consensus       172 ~~L~L~~N~l~~~~----~~~~l~~L~~L~Ls~N~l~------------------------~l~~~~~~l~~L~~L~L~~  223 (317)
T 3o53_A          172 EHLNLQYNFIYDVK----GQVVFAKLKTLDLSSNKLA------------------------FMGPEFQSAAGVTWISLRN  223 (317)
T ss_dssp             CEEECTTSCCCEEE----CCCCCTTCCEEECCSSCCC------------------------EECGGGGGGTTCSEEECTT
T ss_pred             CEEECCCCcCcccc----cccccccCCEEECCCCcCC------------------------cchhhhcccCcccEEECcC
Confidence            99999999998764    2234899999999999983                        3455578889999999999


Q ss_pred             CcCccCcChhccCCCCCCeeeCCCCccc-ccChhhhcCCCCCCeEeCcCC-cceecCCCCCCCC
Q 048635          482 NALTGSIPSSFGNLKQIESLDLSMNNLS-GKIPAQLASLNFLSVLNLSYN-NLVGQIPTAKHVL  543 (562)
Q Consensus       482 n~i~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~l~~n-~l~~~~p~~~~~~  543 (562)
                      |.++ .+|..+..+++|+.|++++|+++ +.+|..+..+++|+.+++++| .+.+..|......
T Consensus       224 N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~  286 (317)
T 3o53_A          224 NKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP  286 (317)
T ss_dssp             SCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCCSST
T ss_pred             Cccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhccCCC
Confidence            9999 67888999999999999999999 788899999999999999955 5777776554433

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=5.9e-26  Score=217.95  Aligned_cols=249  Identities=21%  Similarity=0.202  Sum_probs=141.3

Q ss_pred             CCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCc-ccccC-CCCCCCCCCCEEEc
Q 048635          245 YLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNH-FSGPI-PSFHESRNLNYLDL  322 (562)
Q Consensus       245 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~-~~~~~~~~L~~L~l  322 (562)
                      ++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|. +.... ..+..+++|++|++
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l  112 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence            44444444444444444444555555555555555554444445555555555555554 43331 23345555555555


Q ss_pred             CCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCC
Q 048635          323 SSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQ  402 (562)
Q Consensus       323 ~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  402 (562)
                      ++|.++            .++...+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+
T Consensus       113 ~~n~l~------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  180 (285)
T 1ozn_A          113 DRCGLQ------------ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD  180 (285)
T ss_dssp             TTSCCC------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CCCcCC------------EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccC
Confidence            555544            23333355666666666666666655555566667777777777776665555566677777


Q ss_pred             EEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCC
Q 048635          403 VLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHN  482 (562)
Q Consensus       403 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n  482 (562)
                      +|++++|.+.+..  +..+..+++|++|++++|++.                       +..+..+..+++|+.|++++|
T Consensus       181 ~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~-----------------------~~~~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          181 RLLLHQNRVAHVH--PHAFRDLGRLMTLYLFANNLS-----------------------ALPTEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             EEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCS-----------------------CCCHHHHTTCTTCCEEECCSS
T ss_pred             EEECCCCcccccC--HhHccCcccccEeeCCCCcCC-----------------------cCCHHHcccCcccCEEeccCC
Confidence            7777777766654  566666777777777777663                       222334566777777777777


Q ss_pred             cCccCcChhccCCCCCCeeeCCCCcccccChhhhcC--CCCCCeEeCcCCc
Q 048635          483 ALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLAS--LNFLSVLNLSYNN  531 (562)
Q Consensus       483 ~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~--l~~L~~L~l~~n~  531 (562)
                      .+....+.. .....++.+..+.+.+....|+.+.+  +..++..++.+|+
T Consensus       236 ~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C~  285 (285)
T 1ozn_A          236 PWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA  285 (285)
T ss_dssp             CEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC-
T ss_pred             CccCCCCcH-HHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccCC
Confidence            776332211 11233445556667777667766644  4455655666653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=5.3e-26  Score=225.33  Aligned_cols=281  Identities=20%  Similarity=0.207  Sum_probs=158.7

Q ss_pred             CCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCcccc
Q 048635           75 NLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCK  154 (562)
Q Consensus        75 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~  154 (562)
                      .|+.....+.++++++ .+|..+.  ++|++|++++|.+.        ...+..|.++++|++|++++|.++++++   .
T Consensus        29 ~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~--------~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~   94 (353)
T 2z80_A           29 SCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRIT--------YISNSDLQRCVNLQALVLTSNGINTIEE---D   94 (353)
T ss_dssp             EECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCC--------EECTTTTTTCTTCCEEECTTSCCCEECT---T
T ss_pred             CCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCc--------ccCHHHhccCCCCCEEECCCCccCccCH---h
Confidence            3444455666666666 4454433  35666666666532        2222344555555555555555444332   2


Q ss_pred             ccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCC
Q 048635          155 ALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQ  234 (562)
Q Consensus       155 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~  234 (562)
                      .+..+++                                    |++|++++|.+++..+..+..+++|++|++++|.+..
T Consensus        95 ~~~~l~~------------------------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  138 (353)
T 2z80_A           95 SFSSLGS------------------------------------LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT  138 (353)
T ss_dssp             TTTTCTT------------------------------------CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS
T ss_pred             hcCCCCC------------------------------------CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc
Confidence            2333444                                    4555555555543333335555566666666555443


Q ss_pred             CCC-CCCCCCCCCCEEEccCC-cCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCC
Q 048635          235 GSL-PNFPKNSYLQNLNLANT-SFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFH  312 (562)
Q Consensus       235 ~~~-~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~  312 (562)
                      ... ..+..+++|++|++++| .+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+....    
T Consensus       139 l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~----  214 (353)
T 2z80_A          139 LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL----  214 (353)
T ss_dssp             SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHH----
T ss_pred             cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccch----
Confidence            322 23445566666666665 344444555666666666776666666555666666666666666666553222    


Q ss_pred             CCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccC---CCCCCCCEEEcccCCCCC
Q 048635          313 ESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSL---ANCNMLQVLDFRNNHISD  389 (562)
Q Consensus       313 ~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~  389 (562)
                                                     ...+..+++|+.|++++|.+++..+..+   .....++.++++++.+.+
T Consensus       215 -------------------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~  263 (353)
T 2z80_A          215 -------------------------------EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD  263 (353)
T ss_dssp             -------------------------------HHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH
T ss_pred             -------------------------------hhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC
Confidence                                           1112223334444444444443222221   235567788888887776


Q ss_pred             ----cchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCC
Q 048635          390 ----NFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLS  442 (562)
Q Consensus       390 ----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  442 (562)
                          .+|..+..+++|++|++++|+++...  ...+..+++|++|++++|++.+..|
T Consensus       264 ~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~--~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          264 ESLFQVMKLLNQISGLLELEFSRNQLKSVP--DGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             HHHHHHHHHHHTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cchhhhHHHHhcccCCCEEECCCCCCCccC--HHHHhcCCCCCEEEeeCCCccCcCC
Confidence                35677888999999999999988443  3335789999999999999977665

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=1.2e-24  Score=228.57  Aligned_cols=269  Identities=24%  Similarity=0.273  Sum_probs=187.0

Q ss_pred             CCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCC
Q 048635          160 PNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPN  239 (562)
Q Consensus       160 ~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~  239 (562)
                      .+++.|++++|.++. +|..+              .++|++|++++|.++ .+|.   .+++|++|++++|.+..  ++.
T Consensus        40 ~~l~~L~ls~n~L~~-lp~~l--------------~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~--lp~   98 (622)
T 3g06_A           40 NGNAVLNVGESGLTT-LPDCL--------------PAHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS--LPV   98 (622)
T ss_dssp             HCCCEEECCSSCCSC-CCSCC--------------CTTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC--CCC
T ss_pred             CCCcEEEecCCCcCc-cChhh--------------CCCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc--CCC
Confidence            368888888888763 33222              146888888888887 4444   46788888888887643  333


Q ss_pred             CCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCE
Q 048635          240 FPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNY  319 (562)
Q Consensus       240 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~  319 (562)
                        .+++|++|++++|.+++. |.   .+++|+.|++++|.+++ +|..   +++|++|++++|.+.+...   .+++|+.
T Consensus        99 --~l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~  165 (622)
T 3g06_A           99 --LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPA---LPSELCK  165 (622)
T ss_dssp             --CCTTCCEEEECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC---CCTTCCE
T ss_pred             --CCCCCCEEECcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcCC---ccCCCCE
Confidence              567888888888887753 33   56778888888888874 4443   3778888888888775432   3467888


Q ss_pred             EEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCC
Q 048635          320 LDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNAS  399 (562)
Q Consensus       320 L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~  399 (562)
                      |++++|.++            .+|    ..+++|+.|++++|.+++ +|.   .+++|+.|++++|.++.. |.   .++
T Consensus       166 L~L~~N~l~------------~l~----~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l-~~---~~~  221 (622)
T 3g06_A          166 LWAYNNQLT------------SLP----MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSL-PA---LPS  221 (622)
T ss_dssp             EECCSSCCS------------CCC----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSC-CC---CCT
T ss_pred             EECCCCCCC------------CCc----ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccccc-CC---CCC
Confidence            888887776            444    234568888888888774 333   246788888888887763 32   246


Q ss_pred             CCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeC
Q 048635          400 SLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNM  479 (562)
Q Consensus       400 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L  479 (562)
                      +|++|++++|.+++.   +   ..+++|+.|++++|.++                        .+|.   .+++|+.|++
T Consensus       222 ~L~~L~Ls~N~L~~l---p---~~l~~L~~L~Ls~N~L~------------------------~lp~---~~~~L~~L~L  268 (622)
T 3g06_A          222 GLKELIVSGNRLTSL---P---VLPSELKELMVSGNRLT------------------------SLPM---LPSGLLSLSV  268 (622)
T ss_dssp             TCCEEECCSSCCSCC---C---CCCTTCCEEECCSSCCS------------------------CCCC---CCTTCCEEEC
T ss_pred             CCCEEEccCCccCcC---C---CCCCcCcEEECCCCCCC------------------------cCCc---ccccCcEEeC
Confidence            788888888877742   3   34577888888888773                        2233   4567888888


Q ss_pred             cCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCC
Q 048635          480 SHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLN  520 (562)
Q Consensus       480 s~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  520 (562)
                      ++|.++ .+|..|.++++|+.|+|++|++++..|..+..++
T Consensus       269 s~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          269 YRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             CSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             CCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            888888 6677788888888888888888877777665544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=9.7e-25  Score=222.88  Aligned_cols=245  Identities=20%  Similarity=0.180  Sum_probs=125.5

Q ss_pred             CEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChh
Q 048635          136 RELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEK  215 (562)
Q Consensus       136 ~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  215 (562)
                      +.++.++..++.+|..    +  .++++.|++++|.+....+..            +.++++|++|++++|.++...+..
T Consensus        46 ~~v~c~~~~l~~iP~~----~--~~~l~~L~L~~n~i~~~~~~~------------~~~l~~L~~L~Ls~n~i~~i~~~~  107 (440)
T 3zyj_A           46 SKVICVRKNLREVPDG----I--STNTRLLNLHENQIQIIKVNS------------FKHLRHLEILQLSRNHIRTIEIGA  107 (440)
T ss_dssp             CEEECCSCCCSSCCSC----C--CTTCSEEECCSCCCCEECTTT------------TSSCSSCCEEECCSSCCCEECGGG
T ss_pred             CEEEeCCCCcCcCCCC----C--CCCCcEEEccCCcCCeeCHHH------------hhCCCCCCEEECCCCcCCccChhh
Confidence            3444555555554431    1  134555555555554443322            333445666666666665555555


Q ss_pred             hhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCc-ccccCCccCCCCCCC
Q 048635          216 ILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCS-FTGPIPTSTTNLTQL  294 (562)
Q Consensus       216 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~l~~L  294 (562)
                      |.++++|+.|++++|.+.......+..+++|++|++++|.++...+..+..+++|++|++++|. +....+..+..+++|
T Consensus       108 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L  187 (440)
T 3zyj_A          108 FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL  187 (440)
T ss_dssp             GTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC
T ss_pred             ccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc
Confidence            6666666666666665544433345555566666666666555544555566666666666532 322223345555556


Q ss_pred             CeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCC
Q 048635          295 FHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANC  374 (562)
Q Consensus       295 ~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l  374 (562)
                      ++|++++|.+.. .+.+..+++|++|++++|.++            .++...|.++++|+.|++++|.+++..+.+|..+
T Consensus       188 ~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~N~l~------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  254 (440)
T 3zyj_A          188 RYLNLAMCNLRE-IPNLTPLIKLDELDLSGNHLS------------AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL  254 (440)
T ss_dssp             CEEECTTSCCSS-CCCCTTCSSCCEEECTTSCCC------------EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC
T ss_pred             CeecCCCCcCcc-ccccCCCcccCEEECCCCccC------------ccChhhhccCccCCEEECCCCceeEEChhhhcCC
Confidence            666665555542 233444455555555555443            2222224445555555555555554444555555


Q ss_pred             CCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCccc
Q 048635          375 NMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNF  411 (562)
Q Consensus       375 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  411 (562)
                      ++|++|+|++|++++..+..|..+++|+.|++++|++
T Consensus       255 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             CCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence            5555555555555544444444455555555555544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=3.4e-25  Score=232.75  Aligned_cols=291  Identities=23%  Similarity=0.192  Sum_probs=199.4

Q ss_pred             CCCCCCCCCCCCCCcceeeeCC-------CCCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCc
Q 048635           15 AKMSQWSDSTNCCDWTGVDCDE-------AGHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHC   87 (562)
Q Consensus        15 ~~~~~w~~~~~~c~w~g~~c~~-------~~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n   87 (562)
                      +..+.|....+||.|.|..+..       ...++.|+++++ .+. .+              |..+.  ++|++|++++|
T Consensus        10 ~~w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n-~L~-~l--------------p~~l~--~~L~~L~L~~N   71 (622)
T 3g06_A           10 AVWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGES-GLT-TL--------------PDCLP--AHITTLVIPDN   71 (622)
T ss_dssp             CHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSS-CCS-CC--------------CSCCC--TTCSEEEECSC
T ss_pred             HHHHHHHhcCCcchhccccccCcccccccCCCCcEEEecCC-CcC-cc--------------ChhhC--CCCcEEEecCC
Confidence            3445676677889996643211       145888999988 555 32              33343  78999999999


Q ss_pred             cCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEec
Q 048635           88 GFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNL  167 (562)
Q Consensus        88 ~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l  167 (562)
                      .++ .+|.   .+++|++|++++|.+.         .+|.   .+++|++|++++|.++.++.       .+++|+.|++
T Consensus        72 ~l~-~lp~---~l~~L~~L~Ls~N~l~---------~lp~---~l~~L~~L~Ls~N~l~~l~~-------~l~~L~~L~L  128 (622)
T 3g06_A           72 NLT-SLPA---LPPELRTLEVSGNQLT---------SLPV---LPPGLLELSIFSNPLTHLPA-------LPSGLCKLWI  128 (622)
T ss_dssp             CCS-CCCC---CCTTCCEEEECSCCCS---------CCCC---CCTTCCEEEECSCCCCCCCC-------CCTTCCEEEC
T ss_pred             CCC-CCCC---cCCCCCEEEcCCCcCC---------cCCC---CCCCCCEEECcCCcCCCCCC-------CCCCcCEEEC
Confidence            888 5665   5788999999998852         2333   67888999999988887653       5678888888


Q ss_pred             ccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCC
Q 048635          168 SSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQ  247 (562)
Q Consensus       168 ~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~  247 (562)
                      ++|.++....                .+++|++|++++|.+++ +|.   .+++|+.|++++|.+...  +  ..+++|+
T Consensus       129 ~~N~l~~lp~----------------~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l--~--~~~~~L~  184 (622)
T 3g06_A          129 FGNQLTSLPV----------------LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTSL--P--MLPSGLQ  184 (622)
T ss_dssp             CSSCCSCCCC----------------CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC--C--CCCTTCC
T ss_pred             CCCCCCcCCC----------------CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCCC--c--ccCCCCc
Confidence            8888765321                13578888888888874 333   246788888888876442  2  3457788


Q ss_pred             EEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCC
Q 048635          248 NLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNL  327 (562)
Q Consensus       248 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l  327 (562)
                      .|++++|.+++ +|.   ..++|+.|++++|.++ .+|..   +++|+.|++++|.+++..   ..+++|+.|++++|.+
T Consensus       185 ~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L  253 (622)
T 3g06_A          185 ELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRL  253 (622)
T ss_dssp             EEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCC
T ss_pred             EEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCC
Confidence            88888888774 332   2467788888888777 33432   367788888888777533   3456777777777776


Q ss_pred             cceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcC
Q 048635          328 NGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNA  398 (562)
Q Consensus       328 ~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l  398 (562)
                      +            .+|.    .+++|+.|++++|.++ .+|..+..+++|+.|+|++|.+++..+..+..+
T Consensus       254 ~------------~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L  307 (622)
T 3g06_A          254 T------------SLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI  307 (622)
T ss_dssp             S------------CCCC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred             C------------cCCc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence            5            4443    3456777777777777 556667777777777777777777666655543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=1e-24  Score=223.44  Aligned_cols=204  Identities=20%  Similarity=0.156  Sum_probs=95.6

Q ss_pred             CCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEE
Q 048635          195 LLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVD  274 (562)
Q Consensus       195 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  274 (562)
                      +++|++|++++|.+++..+..|..+++|+.|++++|.+.......+..+++|++|++++|.++...+..+..+++|++|+
T Consensus        98 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  177 (452)
T 3zyi_A           98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD  177 (452)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEe
Confidence            33455555555555544445555555555555555554433333344455555555555555544444455555555555


Q ss_pred             ccCC-cccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCc
Q 048635          275 LRSC-SFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGL  353 (562)
Q Consensus       275 l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L  353 (562)
                      +++| .+....+..+..+++|++|++++|.+.+. +.+..+++|++|++++|.++            .++...|.++++|
T Consensus       178 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~------------~~~~~~~~~l~~L  244 (452)
T 3zyi_A          178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSGNHFP------------EIRPGSFHGLSSL  244 (452)
T ss_dssp             CCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CCCTTCTTCCEEECTTSCCS------------EECGGGGTTCTTC
T ss_pred             CCCCCCccccChhhccCCCCCCEEECCCCccccc-ccccccccccEEECcCCcCc------------ccCcccccCccCC
Confidence            5553 22222223344555555555555555432 33344444444444444443            2222224444444


Q ss_pred             CEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCccc
Q 048635          354 HILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNF  411 (562)
Q Consensus       354 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  411 (562)
                      +.|++++|.+++..+..+..+++|++|+|++|++++..+..+..+++|++|++++|.+
T Consensus       245 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred             CEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence            4444444444444444444444444444444444443333444444444444444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=5.8e-26  Score=234.00  Aligned_cols=236  Identities=19%  Similarity=0.222  Sum_probs=195.1

Q ss_pred             CCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEc
Q 048635          243 NSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDL  322 (562)
Q Consensus       243 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l  322 (562)
                      +++|+.|++++|.+++..|..+..+++|++|++++|.+++..+  +..+++|++|++++|.+.+..+    .++|++|++
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L  106 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHA  106 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence            4567777777777777667778888888888888888876554  7788888888888888876543    378899999


Q ss_pred             CCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhh-cCCCC
Q 048635          323 SSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLR-NASSL  401 (562)
Q Consensus       323 ~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L  401 (562)
                      ++|.++.            ++   ...+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|
T Consensus       107 ~~N~l~~------------~~---~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L  171 (487)
T 3oja_A          107 ANNNISR------------VS---CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL  171 (487)
T ss_dssp             CSSCCCC------------EE---ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred             cCCcCCC------------CC---ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc
Confidence            8888762            22   22346799999999999988888899999999999999999998887775 79999


Q ss_pred             CEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcC
Q 048635          402 QVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSH  481 (562)
Q Consensus       402 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~  481 (562)
                      ++|++++|.+.+..    ....+++|++|++++|.++                        .+|+.+..+++|+.|++++
T Consensus       172 ~~L~Ls~N~l~~~~----~~~~l~~L~~L~Ls~N~l~------------------------~~~~~~~~l~~L~~L~Ls~  223 (487)
T 3oja_A          172 EHLNLQYNFIYDVK----GQVVFAKLKTLDLSSNKLA------------------------FMGPEFQSAAGVTWISLRN  223 (487)
T ss_dssp             CEEECTTSCCCEEE----CCCCCTTCCEEECCSSCCC------------------------EECGGGGGGTTCSEEECTT
T ss_pred             cEEecCCCcccccc----ccccCCCCCEEECCCCCCC------------------------CCCHhHcCCCCccEEEecC
Confidence            99999999998764    2335899999999999984                        2445578889999999999


Q ss_pred             CcCccCcChhccCCCCCCeeeCCCCccc-ccChhhhcCCCCCCeEeCc
Q 048635          482 NALTGSIPSSFGNLKQIESLDLSMNNLS-GKIPAQLASLNFLSVLNLS  528 (562)
Q Consensus       482 n~i~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~l~  528 (562)
                      |.++ .+|..+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus       224 N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          224 NKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             SCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            9999 47888999999999999999998 6788888899999999886

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=7e-27  Score=227.78  Aligned_cols=249  Identities=18%  Similarity=0.118  Sum_probs=202.9

Q ss_pred             CCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCC
Q 048635          246 LQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSN  325 (562)
Q Consensus       246 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n  325 (562)
                      ++..+++.+.+.......+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+ +..+++|++|++++|
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n   90 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN   90 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC
Confidence            3444555555443333444567899999999999998777889999999999999999987655 889999999999999


Q ss_pred             CCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEE
Q 048635          326 NLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLV  405 (562)
Q Consensus       326 ~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  405 (562)
                      .++            .++     ..++|+.|++++|.+++..+..   +++|++|++++|++++..+..+..+++|++|+
T Consensus        91 ~l~------------~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  150 (317)
T 3o53_A           91 YVQ------------ELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLD  150 (317)
T ss_dssp             EEE------------EEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEE
T ss_pred             ccc------------ccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEE
Confidence            876            222     2368999999999998765543   67899999999999997777888999999999


Q ss_pred             ccCcccceecCCCCCC-CCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcC
Q 048635          406 LRSNNFSGHISYPRNN-VSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNAL  484 (562)
Q Consensus       406 l~~n~l~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i  484 (562)
                      +++|.+.+..  +..+ ..+++|++|++++|.+++.                         +....+++|++|++++|.+
T Consensus       151 Ls~N~l~~~~--~~~~~~~l~~L~~L~L~~N~l~~~-------------------------~~~~~l~~L~~L~Ls~N~l  203 (317)
T 3o53_A          151 LKLNEIDTVN--FAELAASSDTLEHLNLQYNFIYDV-------------------------KGQVVFAKLKTLDLSSNKL  203 (317)
T ss_dssp             CTTSCCCEEE--GGGGGGGTTTCCEEECTTSCCCEE-------------------------ECCCCCTTCCEEECCSSCC
T ss_pred             CCCCCCCccc--HHHHhhccCcCCEEECCCCcCccc-------------------------ccccccccCCEEECCCCcC
Confidence            9999998765  4544 4689999999999998422                         2233589999999999999


Q ss_pred             ccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcce-ecCCCCCCCCc
Q 048635          485 TGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV-GQIPTAKHVLP  544 (562)
Q Consensus       485 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~-~~~p~~~~~~~  544 (562)
                      ++ +|..+..+++|++|++++|+++ .+|..+..+++|++|++++|++. +.+|..+..++
T Consensus       204 ~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~  262 (317)
T 3o53_A          204 AF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ  262 (317)
T ss_dssp             CE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCH
T ss_pred             Cc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccc
Confidence            94 5566999999999999999999 57888999999999999999998 65565444443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=3.3e-27  Score=229.51  Aligned_cols=205  Identities=21%  Similarity=0.265  Sum_probs=129.6

Q ss_pred             CCCCCCeeeCcCCcccccCCC-C--CCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCC-----CCcCEEECcCC
Q 048635          290 NLTQLFHVDFSSNHFSGPIPS-F--HESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRN-----CGLHILDLSGN  361 (562)
Q Consensus       290 ~l~~L~~L~l~~n~~~~~~~~-~--~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~-----~~L~~L~L~~n  361 (562)
                      .+++|++|++++|.+.+..+. +  ..+++|++|++++|.++            .+|.. +..+     ++|++|++++|
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~------------~~~~~-~~~l~~~~~~~L~~L~L~~N  159 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA------------TRDAW-LAELQQWLKPGLKVLSIAQA  159 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCS------------SSSSH-HHHHHTTCCTTCCEEEEESC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCc------------chhHH-HHHHHHhhcCCCcEEEeeCC
Confidence            345555555555555543322 1  45555555555555554            22221 2222     56777777777


Q ss_pred             cccccCCccCCCCCCCCEEEcccCCCCCc--chHHh--hcCCCCCEEEccCcccceecCCC-CCCCCCCCCCEEEcCCCc
Q 048635          362 QLQGVVPKSLANCNMLQVLDFRNNHISDN--FPCWL--RNASSLQVLVLRSNNFSGHISYP-RNNVSWPLLQIVDFASNK  436 (562)
Q Consensus       362 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~l--~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~~~L~~L~l~~n~  436 (562)
                      ++++..+..+..+++|++|++++|++.+.  .+..+  ..+++|++|++++|.+.+...++ ..+..+++|++|++++|+
T Consensus       160 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~  239 (312)
T 1wwl_A          160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS  239 (312)
T ss_dssp             SCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC
T ss_pred             CCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc
Confidence            77766666777777777777777776553  22233  66777777777777766322111 222355677777777777


Q ss_pred             CCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhh
Q 048635          437 FGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQL  516 (562)
Q Consensus       437 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l  516 (562)
                      +.+..|                      ...+..+++|++|++++|.++ .+|..+.  ++|++|++++|++++. |. +
T Consensus       240 l~~~~~----------------------~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~  292 (312)
T 1wwl_A          240 LRDAAG----------------------APSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-P  292 (312)
T ss_dssp             CCSSCC----------------------CSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-T
T ss_pred             CCcccc----------------------hhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-H
Confidence            743221                      123445678888888888888 6776665  7888888888888855 65 7


Q ss_pred             cCCCCCCeEeCcCCccee
Q 048635          517 ASLNFLSVLNLSYNNLVG  534 (562)
Q Consensus       517 ~~l~~L~~L~l~~n~l~~  534 (562)
                      ..+++|++|++++|++++
T Consensus       293 ~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          293 DELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             TTSCEEEEEECTTCTTTC
T ss_pred             hhCCCCCEEeccCCCCCC
Confidence            888888889998888875

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=2.6e-26  Score=223.16  Aligned_cols=255  Identities=22%  Similarity=0.189  Sum_probs=163.4

Q ss_pred             ccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCC--------CCCCCCEEEccCCcCCCCCCCC
Q 048635          192 VANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFP--------KNSYLQNLNLANTSFSGILPDP  263 (562)
Q Consensus       192 l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~--------~~~~L~~L~L~~n~l~~~~~~~  263 (562)
                      .+..++|++|++++|.+  .+|..+...  |+.|++++|.+.....+...        .+++|++|++++|.+++..|..
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  114 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP  114 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred             EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence            34455677777777777  556555433  66666666654333222211        2455555566555555555544


Q ss_pred             C--cCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCccc
Q 048635          264 I--GILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGT  341 (562)
Q Consensus       264 ~--~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~  341 (562)
                      +  ..+++|++|++++|.+++. |..+..++.                  ...++|++|++++|.+.            .
T Consensus       115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~------------------~~~~~L~~L~L~~N~l~------------~  163 (312)
T 1wwl_A          115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQ------------------WLKPGLKVLSIAQAHSL------------N  163 (312)
T ss_dssp             SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHT------------------TCCTTCCEEEEESCSCC------------C
T ss_pred             HHHhcCCCccEEEccCCCCcch-hHHHHHHHH------------------hhcCCCcEEEeeCCCCc------------c
Confidence            3  5555555555555555543 433333300                  01245555555555554            3


Q ss_pred             CCccccCCCCCcCEEECcCCccccc--CCccC--CCCCCCCEEEcccCCCCCc---chHHhhcCCCCCEEEccCccccee
Q 048635          342 LSDIIFPRNCGLHILDLSGNQLQGV--VPKSL--ANCNMLQVLDFRNNHISDN---FPCWLRNASSLQVLVLRSNNFSGH  414 (562)
Q Consensus       342 ~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~l--~~l~~L~~L~L~~n~l~~~---~~~~l~~l~~L~~L~l~~n~l~~~  414 (562)
                      ++...+..+++|++|++++|++.+.  .+..+  ..+++|++|++++|++++.   ....+..+++|++|++++|.+.+.
T Consensus       164 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  243 (312)
T 1wwl_A          164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA  243 (312)
T ss_dssp             CCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS
T ss_pred             chHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc
Confidence            3333366677777777777776543  22333  7788899999999988842   223456789999999999998865


Q ss_pred             cCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccC
Q 048635          415 ISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGN  494 (562)
Q Consensus       415 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~  494 (562)
                      .+ ...+..+++|++|++++|+++                        .+|..+.  ++|++|++++|++++. |. +..
T Consensus       244 ~~-~~~~~~l~~L~~L~Ls~N~l~------------------------~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~  294 (312)
T 1wwl_A          244 AG-APSCDWPSQLNSLNLSFTGLK------------------------QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDE  294 (312)
T ss_dssp             CC-CSCCCCCTTCCEEECTTSCCS------------------------SCCSSCC--SEEEEEECCSSCCCSC-CC-TTT
T ss_pred             cc-hhhhhhcCCCCEEECCCCccC------------------------hhhhhcc--CCceEEECCCCCCCCC-hh-Hhh
Confidence            41 134556789999999999984                        3444444  7899999999999965 66 889


Q ss_pred             CCCCCeeeCCCCcccc
Q 048635          495 LKQIESLDLSMNNLSG  510 (562)
Q Consensus       495 l~~L~~L~Ls~n~l~~  510 (562)
                      +++|++|++++|++++
T Consensus       295 l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          295 LPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             SCEEEEEECTTCTTTC
T ss_pred             CCCCCEEeccCCCCCC
Confidence            9999999999999985

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=1.2e-23  Score=199.93  Aligned_cols=217  Identities=21%  Similarity=0.232  Sum_probs=151.4

Q ss_pred             CCCCCcceeeeCCCCCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCccCcccCCccCCCCCCC
Q 048635           24 TNCCDWTGVDCDEAGHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRL  103 (562)
Q Consensus        24 ~~~c~w~g~~c~~~~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  103 (562)
                      .++|.|.|..|.....++.++++++ .++..               |..+.  ++|++|++++|++++..+..|.++++|
T Consensus         2 ~~~C~~~~~~C~c~~~~~~l~~~~~-~l~~i---------------p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L   63 (270)
T 2o6q_A            2 EALCKKDGGVCSCNNNKNSVDCSSK-KLTAI---------------PSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKL   63 (270)
T ss_dssp             CCCBGGGTCSBEEETTTTEEECTTS-CCSSC---------------CSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTC
T ss_pred             CccCCCCCCCCEeCCCCCEEEccCC-CCCcc---------------CCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCC
Confidence            4789999999987677888999988 55532               22332  579999999999997777789999999


Q ss_pred             cEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccc
Q 048635          104 VTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANL  183 (562)
Q Consensus       104 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l  183 (562)
                      ++|++++|.+.        ...+..|.++++|++|++++|.++.++.   ..+..+++|++|++++|.+.+..+..    
T Consensus        64 ~~L~l~~n~l~--------~i~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~----  128 (270)
T 2o6q_A           64 RLLYLNDNKLQ--------TLPAGIFKELKNLETLWVTDNKLQALPI---GVFDQLVNLAELRLDRNQLKSLPPRV----  128 (270)
T ss_dssp             CEEECCSSCCS--------CCCTTTTSSCTTCCEEECCSSCCCCCCT---TTTTTCSSCCEEECCSSCCCCCCTTT----
T ss_pred             CEEECCCCccC--------eeChhhhcCCCCCCEEECCCCcCCcCCH---hHcccccCCCEEECCCCccCeeCHHH----
Confidence            99999999852        4445567888899999999888887765   45667778888888888776654332    


Q ss_pred             cCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCC
Q 048635          184 RSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDP  263 (562)
Q Consensus       184 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  263 (562)
                              +..+++|++|++++|.+++..+..+..+++|+.|++++|.+.......+..+++|++|++++|.+++..+..
T Consensus       129 --------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  200 (270)
T 2o6q_A          129 --------FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA  200 (270)
T ss_dssp             --------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             --------hCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHH
Confidence                    344556777777777776555555666666777777666654444444555666666666666665544444


Q ss_pred             CcCCCCCcEEEccCCccc
Q 048635          264 IGILKYLTRVDLRSCSFT  281 (562)
Q Consensus       264 ~~~~~~L~~L~l~~n~l~  281 (562)
                      +..+++|+.|++++|.+.
T Consensus       201 ~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          201 FDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             TTTCTTCCEEECCSSCBC
T ss_pred             hccccCCCEEEecCCCee
Confidence            555566666666665554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=1.1e-23  Score=200.21  Aligned_cols=203  Identities=25%  Similarity=0.282  Sum_probs=105.6

Q ss_pred             CCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCC-CCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCcccc
Q 048635          269 YLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIP-SFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIF  347 (562)
Q Consensus       269 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~  347 (562)
                      ..+.++++++.++ .+|..+.  +++++|++++|.+.+..+ .+..+++|++|++++|.++            .++...|
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------------~i~~~~~   81 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ------------TLPAGIF   81 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS------------CCCTTTT
T ss_pred             CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC------------eeChhhh
Confidence            3556666666666 3443332  456666666666654433 3455555555555555544            3444434


Q ss_pred             CCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCC
Q 048635          348 PRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLL  427 (562)
Q Consensus       348 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L  427 (562)
                      ..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+.+..  +..       
T Consensus        82 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~-------  152 (270)
T 2o6q_A           82 KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP--KGV-------  152 (270)
T ss_dssp             SSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTT-------
T ss_pred             cCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC--HhH-------
Confidence            45555555555555555444444455555555555555555544444444555555555555444322  222       


Q ss_pred             CEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCc
Q 048635          428 QIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNN  507 (562)
Q Consensus       428 ~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~  507 (562)
                                                              +..+++|++|++++|.+++..+..|..+++|++|++++|+
T Consensus       153 ----------------------------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  192 (270)
T 2o6q_A          153 ----------------------------------------FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ  192 (270)
T ss_dssp             ----------------------------------------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ----------------------------------------ccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc
Confidence                                                    4445555555555555554444445555555555555555


Q ss_pred             ccccChhhhcCCCCCCeEeCcCCcceec
Q 048635          508 LSGKIPAQLASLNFLSVLNLSYNNLVGQ  535 (562)
Q Consensus       508 l~~~~p~~l~~l~~L~~L~l~~n~l~~~  535 (562)
                      +++..+..+..+++|++|++++|++.+.
T Consensus       193 l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          193 LKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             CCcCCHHHhccccCCCEEEecCCCeeCC
Confidence            5544444455555555555555555433

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=5.6e-28  Score=257.27  Aligned_cols=411  Identities=15%  Similarity=0.075  Sum_probs=219.1

Q ss_pred             CCCCCCCEEecCCccCcccCCccCC-CCCCCcEEeCCCCCCCCCCCccccC-CCcccccCCCCCCEEEccCccCCCCCCc
Q 048635           74 ANLTNLTYLNLSHCGFTGEIPTEIS-SLPRLVTLDLSSREPISGFSWRLGI-PNFNFFQNLKELRELYLDNVDLSGLGTE  151 (562)
Q Consensus        74 ~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~  151 (562)
                      ..+++|++|++++|.+++..+..+. .+++|++|++++|..       +.. ..+..+.++++|++|++++|.+++....
T Consensus       102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~-------~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~  174 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG-------FSTDGLAAIAATCRNLKELDLRESDVDDVSGH  174 (594)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE-------EEHHHHHHHHHHCTTCCEEECTTCEEECCCGG
T ss_pred             HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC-------CCHHHHHHHHHhCCCCCEEeCcCCccCCcchH
Confidence            3567778888887777665555554 577788888877731       111 1233344677788888887776665443


Q ss_pred             ccccc-CCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCC
Q 048635          152 RCKAL-SFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYN  230 (562)
Q Consensus       152 ~~~~l-~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~  230 (562)
                      +...+ ..+++|++|++++|. .......+..+        ...+++|++|++++|...+.++..+..+++|+.|++..+
T Consensus       175 ~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l--------~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          175 WLSHFPDTYTSLVSLNISCLA-SEVSFSALERL--------VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY  245 (594)
T ss_dssp             GGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHH--------HHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred             HHHHHhhcCCcCcEEEecccC-CcCCHHHHHHH--------HHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence            33333 366778888887775 11111222211        234567888888777333335666667777777776655


Q ss_pred             CCCC------CCCCCCCCCCCCCEE-EccCCcCCCCCCCCCcCCCCCcEEEccCCcccccC-CccCCCCCCCCeeeCcCC
Q 048635          231 PLLQ------GSLPNFPKNSYLQNL-NLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPI-PTSTTNLTQLFHVDFSSN  302 (562)
Q Consensus       231 ~~~~------~~~~~~~~~~~L~~L-~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n  302 (562)
                      ....      .....+..+++|+.| .+.+... ..++..+..+++|++|++++|.+++.. ...+..+++|++|++++|
T Consensus       246 ~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          246 TAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             CCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             cCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence            3100      000123345666666 3322211 122333345677777777777765332 222456677777777776


Q ss_pred             cccc-cCCCC-CCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCC-CCCCCCE
Q 048635          303 HFSG-PIPSF-HESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLA-NCNMLQV  379 (562)
Q Consensus       303 ~~~~-~~~~~-~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~  379 (562)
                       +.. ..+.+ ..+++|++|++.++.-..  ....+.+++........++++|+.|.+..+.+++..+..+. .+++|+.
T Consensus       325 -~~~~~l~~l~~~~~~L~~L~L~~~~~~g--~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~  401 (594)
T 2p1m_B          325 -IEDAGLEVLASTCKDLRELRVFPSEPFV--MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTR  401 (594)
T ss_dssp             -GHHHHHHHHHHHCTTCCEEEEECSCTTC--SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCE
T ss_pred             -cCHHHHHHHHHhCCCCCEEEEecCcccc--cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcce
Confidence             321 11111 346677777774321000  00011111111111122356677776666666654443333 4667777


Q ss_pred             EEcc--c----CCCCCc-----chHHhhcCCCCCEEEccCcccceecCCCCCCCC-CCCCCEEEcCCCcCCCcCChhhhh
Q 048635          380 LDFR--N----NHISDN-----FPCWLRNASSLQVLVLRSNNFSGHISYPRNNVS-WPLLQIVDFASNKFGGRLSQKCST  447 (562)
Q Consensus       380 L~L~--~----n~l~~~-----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~  447 (562)
                      |+++  +    +.+++.     ++..+..+++|++|++++ .+++..  ...+.. +++|++|++++|.+++.       
T Consensus       402 L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~--~~~l~~~~~~L~~L~L~~~~i~~~-------  471 (594)
T 2p1m_B          402 FRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKV--FEYIGTYAKKMEMLSVAFAGDSDL-------  471 (594)
T ss_dssp             EEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHH--HHHHHHHCTTCCEEEEESCCSSHH-------
T ss_pred             eEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHH--HHHHHHhchhccEeeccCCCCcHH-------
Confidence            7777  3    344421     222355667777777765 443221  222222 56677777777766322       


Q ss_pred             hhhhhhhhhhCCCcccccccc-cCcCCCCEEeCcCCcCccCcCh-hccCCCCCCeeeCCCCcccccChhhh-cCCCCCCe
Q 048635          448 TLGMRYQATNKRCRDQATEEM-GRFKSLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKIPAQL-ASLNFLSV  524 (562)
Q Consensus       448 ~~~l~~~~~~~~~~~~~~~~l-~~l~~L~~L~Ls~n~i~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~  524 (562)
                                      .+..+ ..+++|+.|++++|.+++..+. .+..+++|++|++++|+++......+ ..+++|+.
T Consensus       472 ----------------~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i  535 (594)
T 2p1m_B          472 ----------------GMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNV  535 (594)
T ss_dssp             ----------------HHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEE
T ss_pred             ----------------HHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEE
Confidence                            11122 4467777777777777544333 33456777777777777754333333 44566655


Q ss_pred             EeCcCC
Q 048635          525 LNLSYN  530 (562)
Q Consensus       525 L~l~~n  530 (562)
                      ..+..+
T Consensus       536 ~~~~~~  541 (594)
T 2p1m_B          536 EVIDER  541 (594)
T ss_dssp             EEECSS
T ss_pred             EEecCC
Confidence            555544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=2.4e-25  Score=229.39  Aligned_cols=230  Identities=19%  Similarity=0.117  Sum_probs=195.2

Q ss_pred             cCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCc
Q 048635          265 GILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSD  344 (562)
Q Consensus       265 ~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~  344 (562)
                      ..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+ +..+++|++|++++|.++            .++ 
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~------------~l~-   96 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ------------ELL-   96 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEE------------EEE-
T ss_pred             ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCC------------CCC-
Confidence            345689999999999998878899999999999999999987665 889999999999999886            222 


Q ss_pred             cccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCC-C
Q 048635          345 IIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNV-S  423 (562)
Q Consensus       345 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~-~  423 (562)
                          ..++|+.|++++|.+++..+.   .+++|+.|++++|.+++..|..+..+++|++|++++|.+.+..  +..+. .
T Consensus        97 ----~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~~  167 (487)
T 3oja_A           97 ----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN--FAELAAS  167 (487)
T ss_dssp             ----ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE--GGGGGGG
T ss_pred             ----CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC--hHHHhhh
Confidence                226899999999999976654   4688999999999999988888999999999999999999866  56654 7


Q ss_pred             CCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeC
Q 048635          424 WPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDL  503 (562)
Q Consensus       424 ~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~L  503 (562)
                      +++|++|++++|.+++.                         +.+..+++|+.|+|++|.+++ +|..+..+++|+.|++
T Consensus       168 l~~L~~L~Ls~N~l~~~-------------------------~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~L  221 (487)
T 3oja_A          168 SDTLEHLNLQYNFIYDV-------------------------KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISL  221 (487)
T ss_dssp             TTTCCEEECTTSCCCEE-------------------------ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEEC
T ss_pred             CCcccEEecCCCccccc-------------------------cccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEe
Confidence            89999999999998432                         223458999999999999995 5556999999999999


Q ss_pred             CCCcccccChhhhcCCCCCCeEeCcCCcce-ecCCCCCCCCc
Q 048635          504 SMNNLSGKIPAQLASLNFLSVLNLSYNNLV-GQIPTAKHVLP  544 (562)
Q Consensus       504 s~n~l~~~~p~~l~~l~~L~~L~l~~n~l~-~~~p~~~~~~~  544 (562)
                      ++|++++ +|..+..+++|+.|++++|++. +.+|..+..++
T Consensus       222 s~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~  262 (487)
T 3oja_A          222 RNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ  262 (487)
T ss_dssp             TTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCH
T ss_pred             cCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCC
Confidence            9999995 7888999999999999999998 55554444443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=1.2e-23  Score=200.91  Aligned_cols=210  Identities=18%  Similarity=0.161  Sum_probs=115.0

Q ss_pred             CCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCC-CCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccc
Q 048635          268 KYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIP-SFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDII  346 (562)
Q Consensus       268 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~  346 (562)
                      ++|++|++++|.+++..+..+..+++|++|++++|.+.+..+ .+..+++|++|++++|                     
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n---------------------   86 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN---------------------   86 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC---------------------
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC---------------------
Confidence            346666666666665444455556666666666665554333 2344445555555544                     


Q ss_pred             cCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCC
Q 048635          347 FPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPL  426 (562)
Q Consensus       347 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~  426 (562)
                                     .+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .++..+..+++
T Consensus        87 ---------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~l~~~~~~l~~  150 (276)
T 2z62_A           87 ---------------PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTN  150 (276)
T ss_dssp             ---------------CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-CCCGGGGGCTT
T ss_pred             ---------------ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCcccee-cCchhhccCCC
Confidence                           44444444444445555555555544443333344455555555555544421 11334444555


Q ss_pred             CCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCC----EEeCcCCcCccCcChhccCCCCCCeee
Q 048635          427 LQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLY----ALNMSHNALTGSIPSSFGNLKQIESLD  502 (562)
Q Consensus       427 L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~----~L~Ls~n~i~~~~p~~l~~l~~L~~L~  502 (562)
                      |++|++++|++++.                       .+..+..+++|+    +|++++|.+++..+..+ ...+|++|+
T Consensus       151 L~~L~Ls~N~l~~~-----------------------~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~  206 (276)
T 2z62_A          151 LEHLDLSSNKIQSI-----------------------YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELA  206 (276)
T ss_dssp             CCEEECCSSCCCEE-----------------------CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEE
T ss_pred             CCEEECCCCCCCcC-----------------------CHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEE
Confidence            55555555554221                       122233333444    77788888775444444 344788888


Q ss_pred             CCCCcccccChhhhcCCCCCCeEeCcCCcceecCCC
Q 048635          503 LSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPT  538 (562)
Q Consensus       503 Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~  538 (562)
                      +++|++++..+..+..+++|++|++++|++.+..|.
T Consensus       207 L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          207 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  242 (276)
T ss_dssp             CCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred             CCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence            888888766566667778888888888888766553

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=4e-28  Score=258.38  Aligned_cols=406  Identities=14%  Similarity=0.117  Sum_probs=267.8

Q ss_pred             ccCCCCCCCEEecCCccCccc---CCcc------------CCCCCCCcEEeCCCCCCCCCCCccccCCCccccc-CCCCC
Q 048635           72 GLANLTNLTYLNLSHCGFTGE---IPTE------------ISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQ-NLKEL  135 (562)
Q Consensus        72 ~l~~l~~L~~L~Ls~n~i~~~---~~~~------------~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~-~l~~L  135 (562)
                      .+.++++|++|+++++.....   .|..            ...+++|++|++++|.+.        ...+..+. .+++|
T Consensus        61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~--------~~~~~~l~~~~~~L  132 (594)
T 2p1m_B           61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVT--------DDCLELIAKSFKNF  132 (594)
T ss_dssp             HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCC--------HHHHHHHHHHCTTC
T ss_pred             HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEc--------HHHHHHHHHhCCCC
Confidence            467889999999999853211   2211            236789999999998742        33334443 68999


Q ss_pred             CEEEccCc-cCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCc--Ccc-c
Q 048635          136 RELYLDNV-DLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCD--LRG-K  211 (562)
Q Consensus       136 ~~L~l~~~-~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~--~~~-~  211 (562)
                      ++|++++| .++....  ...+..+++|++|++++|.+++..+..+..+        ...+++|++|++++|.  +.. .
T Consensus       133 ~~L~L~~~~~~~~~~l--~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~--------~~~~~~L~~L~l~~~~~~~~~~~  202 (594)
T 2p1m_B          133 KVLVLSSCEGFSTDGL--AAIAATCRNLKELDLRESDVDDVSGHWLSHF--------PDTYTSLVSLNISCLASEVSFSA  202 (594)
T ss_dssp             CEEEEESCEEEEHHHH--HHHHHHCTTCCEEECTTCEEECCCGGGGGGS--------CTTCCCCCEEECTTCCSCCCHHH
T ss_pred             cEEeCCCcCCCCHHHH--HHHHHhCCCCCEEeCcCCccCCcchHHHHHH--------hhcCCcCcEEEecccCCcCCHHH
Confidence            99999988 4443111  1233478999999999998877665555432        3467889999999986  321 1


Q ss_pred             CChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcC-------CCCCCCCCcCCCCCcEE-EccCCccccc
Q 048635          212 YPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSF-------SGILPDPIGILKYLTRV-DLRSCSFTGP  283 (562)
Q Consensus       212 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l-------~~~~~~~~~~~~~L~~L-~l~~n~l~~~  283 (562)
                      +...+..+++|++|++++|.........+..+++|++|+++.+..       .+ ++..+..+++|+.+ .+.+... +.
T Consensus       203 l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~  280 (594)
T 2p1m_B          203 LERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AY  280 (594)
T ss_dssp             HHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GG
T ss_pred             HHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hh
Confidence            222234579999999998832222111233478899998765532       21 22356778888888 4443322 23


Q ss_pred             CCccCCCCCCCCeeeCcCCcccccCC--CCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcC-
Q 048635          284 IPTSTTNLTQLFHVDFSSNHFSGPIP--SFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSG-  360 (562)
Q Consensus       284 ~~~~l~~l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~-  360 (562)
                      ++..+..+++|++|++++|.+.+...  .+..+++|++|++++| +.           +.........+++|++|++.+ 
T Consensus       281 l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~-----------~~~l~~l~~~~~~L~~L~L~~~  348 (594)
T 2p1m_B          281 LPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IE-----------DAGLEVLASTCKDLRELRVFPS  348 (594)
T ss_dssp             GGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GH-----------HHHHHHHHHHCTTCCEEEEECS
T ss_pred             HHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cC-----------HHHHHHHHHhCCCCCEEEEecC
Confidence            44445567899999999998654221  1357889999999877 32           011111133567899998843 


Q ss_pred             --------CcccccCCccCC-CCCCCCEEEcccCCCCCcchHHhh-cCCCCCEEEcc--C----cccceec---CCCCCC
Q 048635          361 --------NQLQGVVPKSLA-NCNMLQVLDFRNNHISDNFPCWLR-NASSLQVLVLR--S----NNFSGHI---SYPRNN  421 (562)
Q Consensus       361 --------n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~--~----n~l~~~~---~~~~~~  421 (562)
                              +.+++.....+. .+++|++|.+..+.+++..+..+. .+++|+.|+++  +    +.++...   .++..+
T Consensus       349 ~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~  428 (594)
T 2p1m_B          349 EPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIV  428 (594)
T ss_dssp             CTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHH
T ss_pred             cccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHH
Confidence                    344433222222 478899999888888876665554 58999999998  3    4444210   001124


Q ss_pred             CCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccC-cCCCCEEeCcCCcCccCcChhc-cCCCCCC
Q 048635          422 VSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGR-FKSLYALNMSHNALTGSIPSSF-GNLKQIE  499 (562)
Q Consensus       422 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~-l~~L~~L~Ls~n~i~~~~p~~l-~~l~~L~  499 (562)
                      ..+++|+.|++++ .++                       +..+..+.. +++|+.|++++|.+++..+..+ ..+++|+
T Consensus       429 ~~~~~L~~L~L~~-~l~-----------------------~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~  484 (594)
T 2p1m_B          429 EHCKDLRRLSLSG-LLT-----------------------DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLR  484 (594)
T ss_dssp             HHCTTCCEEECCS-SCC-----------------------HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCC
T ss_pred             hhCCCccEEeecC-ccc-----------------------HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcC
Confidence            5678999999977 442                       222333443 7899999999999986665555 6799999


Q ss_pred             eeeCCCCcccccChh-hhcCCCCCCeEeCcCCcce
Q 048635          500 SLDLSMNNLSGKIPA-QLASLNFLSVLNLSYNNLV  533 (562)
Q Consensus       500 ~L~Ls~n~l~~~~p~-~l~~l~~L~~L~l~~n~l~  533 (562)
                      +|+|++|++++..+. .+..+++|++|++++|+++
T Consensus       485 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          485 KLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             EEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             EEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            999999999765444 4456899999999999885

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=8.8e-23  Score=194.80  Aligned_cols=206  Identities=19%  Similarity=0.179  Sum_probs=146.8

Q ss_pred             CCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCC-CCCCCCCCCEEEc
Q 048635          244 SYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIP-SFHESRNLNYLDL  322 (562)
Q Consensus       244 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l  322 (562)
                      +++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+ .+..+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            579999999999998877789999999999999999997777789999999999999999987654 4577788888888


Q ss_pred             CCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCccccc-CCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCC
Q 048635          323 SSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGV-VPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSL  401 (562)
Q Consensus       323 ~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  401 (562)
                      ++|.+.            .++...+..+++|++|++++|.+++. +|..+..+++|++|++++|++++..+..+..+++|
T Consensus       108 ~~n~l~------------~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  175 (276)
T 2z62_A          108 VETNLA------------SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM  175 (276)
T ss_dssp             TTSCCC------------CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred             CCCCcc------------ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhc
Confidence            877765            34443366667777777777777653 46667777777777777777766555555554444


Q ss_pred             C----EEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEE
Q 048635          402 Q----VLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYAL  477 (562)
Q Consensus       402 ~----~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L  477 (562)
                      +    +|++++|.+.+..                                                  .......+|++|
T Consensus       176 ~~l~l~L~ls~n~l~~~~--------------------------------------------------~~~~~~~~L~~L  205 (276)
T 2z62_A          176 PLLNLSLDLSLNPMNFIQ--------------------------------------------------PGAFKEIRLKEL  205 (276)
T ss_dssp             TTCCEEEECCSSCCCEEC--------------------------------------------------TTSSCSCCEEEE
T ss_pred             cccceeeecCCCcccccC--------------------------------------------------ccccCCCcccEE
Confidence            4    5556655554332                                                  111222356666


Q ss_pred             eCcCCcCccCcChhccCCCCCCeeeCCCCccccc
Q 048635          478 NMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGK  511 (562)
Q Consensus       478 ~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~  511 (562)
                      ++++|.+++..+..|..+++|+.|++++|+++..
T Consensus       206 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  239 (276)
T 2z62_A          206 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  239 (276)
T ss_dssp             ECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred             ECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence            6666666655445566677777777777776643

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=3.5e-23  Score=196.87  Aligned_cols=208  Identities=18%  Similarity=0.185  Sum_probs=121.5

Q ss_pred             CCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCc
Q 048635          290 NLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPK  369 (562)
Q Consensus       290 ~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  369 (562)
                      .+++|+.|++++|.+. ..+.+..+++|++|++++|.++            .++  .+..+++|++|++++|.+++..+.
T Consensus        39 ~l~~L~~L~l~~~~i~-~~~~l~~l~~L~~L~l~~n~l~------------~~~--~l~~l~~L~~L~L~~n~l~~~~~~  103 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIK-SVQGIQYLPNVRYLALGGNKLH------------DIS--ALKELTNLTYLILTGNQLQSLPNG  103 (272)
T ss_dssp             HHTTCCEEECTTSCCC-CCTTGGGCTTCCEEECTTSCCC------------CCG--GGTTCTTCCEEECTTSCCCCCCTT
T ss_pred             cccceeeeeeCCCCcc-cccccccCCCCcEEECCCCCCC------------Cch--hhcCCCCCCEEECCCCccCccChh
Confidence            3444444444444443 2223444555555555555443            111  145555566666666666655555


Q ss_pred             cCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhh
Q 048635          370 SLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTL  449 (562)
Q Consensus       370 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  449 (562)
                      .+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..  +..+..+++|++|++++|+++           
T Consensus       104 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~-----------  170 (272)
T 3rfs_A          104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP--KGVFDKLTNLTELDLSYNQLQ-----------  170 (272)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCC-----------
T ss_pred             HhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccC--HHHhccCccCCEEECCCCCcC-----------
Confidence            5566666666666666666655555666666666666666665443  344556666666666666652           


Q ss_pred             hhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcC
Q 048635          450 GMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSY  529 (562)
Q Consensus       450 ~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~  529 (562)
                                  +..+..+..+++|++|++++|.+++..|..|..+++|+.|++++|.+.+.       +++|+.++++.
T Consensus       171 ------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~  231 (272)
T 3rfs_A          171 ------------SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWI  231 (272)
T ss_dssp             ------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHH
T ss_pred             ------------ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHH
Confidence                        22233355667777777777777766666667777777777777766632       44677777777


Q ss_pred             CcceecCCCCCCCCc
Q 048635          530 NNLVGQIPTAKHVLP  544 (562)
Q Consensus       530 n~l~~~~p~~~~~~~  544 (562)
                      |.++|.+|.....+.
T Consensus       232 n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          232 NKHSGVVRNSAGSVA  246 (272)
T ss_dssp             HHTGGGBBCTTSCBC
T ss_pred             HhCCCcccCcccccC
Confidence            777777776655443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=2.4e-22  Score=192.52  Aligned_cols=202  Identities=23%  Similarity=0.194  Sum_probs=133.6

Q ss_pred             CcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCC-CCCCCCCCCEEEcCCCCCcceEECCCCcCcccC
Q 048635          264 IGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIP-SFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTL  342 (562)
Q Consensus       264 ~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~  342 (562)
                      +..++++++++++++.++ .+|..+.  ++++.|++++|.+.+..+ .+..+++|++|++++|.++            .+
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~------------~~   70 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT------------KL   70 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC------------EE
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC------------cc
Confidence            456777888888888877 4454443  577888888888776543 4567777777777777766            22


Q ss_pred             CccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCC
Q 048635          343 SDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNV  422 (562)
Q Consensus       343 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~  422 (562)
                      +.  ...+++|+.|++++|.++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|.+....  +..+.
T Consensus        71 ~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~  145 (290)
T 1p9a_G           71 QV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP--PGLLT  145 (290)
T ss_dssp             EC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC--TTTTT
T ss_pred             cC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC--hhhcc
Confidence            22  245566777777777776 45666677777777777777777766666777777777777777776544  44556


Q ss_pred             CCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeee
Q 048635          423 SWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLD  502 (562)
Q Consensus       423 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~  502 (562)
                      .+++|+.|++++|+++                       +..+..+..+++|+.|++++|+++ .+|..+..+++|+.|+
T Consensus       146 ~l~~L~~L~L~~N~l~-----------------------~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~  201 (290)
T 1p9a_G          146 PTPKLEKLSLANNNLT-----------------------ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAF  201 (290)
T ss_dssp             TCTTCCEEECTTSCCS-----------------------CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEE
T ss_pred             cccCCCEEECCCCcCC-----------------------ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEE
Confidence            6667777777777662                       112223455666777777777766 5555666666677777


Q ss_pred             CCCCccc
Q 048635          503 LSMNNLS  509 (562)
Q Consensus       503 Ls~n~l~  509 (562)
                      |++|.+.
T Consensus       202 L~~Np~~  208 (290)
T 1p9a_G          202 LHGNPWL  208 (290)
T ss_dssp             CCSCCBC
T ss_pred             eCCCCcc
Confidence            7766665

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=1.5e-22  Score=192.43  Aligned_cols=210  Identities=17%  Similarity=0.157  Sum_probs=123.0

Q ss_pred             CCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEE
Q 048635          242 KNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLD  321 (562)
Q Consensus       242 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~  321 (562)
                      .+++|+.|++++|.++..  ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+               
T Consensus        39 ~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~---------------   99 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQS---------------   99 (272)
T ss_dssp             HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCC---------------
T ss_pred             cccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCc---------------
Confidence            355566666666655422  2345555555555555555431  234444455555555544443               


Q ss_pred             cCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCC
Q 048635          322 LSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSL  401 (562)
Q Consensus       322 l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  401 (562)
                                          ++...+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|
T Consensus       100 --------------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  159 (272)
T 3rfs_A          100 --------------------LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL  159 (272)
T ss_dssp             --------------------CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             --------------------cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC
Confidence                                333334555556666666666665555556666666666666666666555555666666


Q ss_pred             CEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcC
Q 048635          402 QVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSH  481 (562)
Q Consensus       402 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~  481 (562)
                      ++|++++|.+.+..  +..+..+++|++|++++|++.                       +..+..+..+++|+.|++++
T Consensus       160 ~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~-----------------------~~~~~~~~~l~~L~~L~l~~  214 (272)
T 3rfs_A          160 TELDLSYNQLQSLP--EGVFDKLTQLKDLRLYQNQLK-----------------------SVPDGVFDRLTSLQYIWLHD  214 (272)
T ss_dssp             CEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCS-----------------------CCCTTTTTTCTTCCEEECCS
T ss_pred             CEEECCCCCcCccC--HHHhcCCccCCEEECCCCcCC-----------------------ccCHHHHhCCcCCCEEEccC
Confidence            66666666666443  444556666666666666663                       22334456677777777777


Q ss_pred             CcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCC
Q 048635          482 NALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFL  522 (562)
Q Consensus       482 n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  522 (562)
                      |.+.+       .++.|+.|+++.|+++|.+|..++.+...
T Consensus       215 N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~~~  248 (272)
T 3rfs_A          215 NPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAPD  248 (272)
T ss_dssp             SCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred             CCccc-------cCcHHHHHHHHHHhCCCcccCcccccCCC
Confidence            77663       34567777777888887777776665543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=1.4e-21  Score=187.15  Aligned_cols=202  Identities=20%  Similarity=0.190  Sum_probs=117.7

Q ss_pred             hhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCC
Q 048635          216 ILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLF  295 (562)
Q Consensus       216 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~  295 (562)
                      +.++++++.++++++.+..... .+  .+.++.|++++|.+++..+..+..+++|++|++++|.+++..+  ...+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~-~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPP-DL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCS-CC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred             ccccCCccEEECCCCCCCcCCC-CC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence            3455666777776665533221 11  2456666666666665555566666666666666666654322  25566666


Q ss_pred             eeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCC
Q 048635          296 HVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCN  375 (562)
Q Consensus       296 ~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~  375 (562)
                      +|++++|.+......+..+++|++|++++|.++            .++...|.++++|+.|++++|++++..+..+..++
T Consensus        81 ~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~------------~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  148 (290)
T 1p9a_G           81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT------------SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP  148 (290)
T ss_dssp             EEECCSSCCSSCCCCTTTCTTCCEEECCSSCCC------------CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred             EEECCCCcCCcCchhhccCCCCCEEECCCCcCc------------ccCHHHHcCCCCCCEEECCCCCCCccChhhccccc
Confidence            666666666644444555666666666666554            44444455666666666666666655555555666


Q ss_pred             CCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcC
Q 048635          376 MLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKF  437 (562)
Q Consensus       376 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~  437 (562)
                      +|+.|++++|+++...+..|..+++|++|++++|.+.   .++..+...++|+.+++++|++
T Consensus       149 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~---~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY---TIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             TCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCCCSEEECCSCCB
T ss_pred             CCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC---ccChhhcccccCCeEEeCCCCc
Confidence            6666666666666544445555666666666666665   2244555555666666666655

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=2.3e-21  Score=182.02  Aligned_cols=178  Identities=21%  Similarity=0.241  Sum_probs=83.6

Q ss_pred             CCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCC
Q 048635          293 QLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLA  372 (562)
Q Consensus       293 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  372 (562)
                      ..++++++++.+...+..+.  +.++.|++++|.+.            .++...+.++++|++|++++|.+++..+..+.
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~   80 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLA------------TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD   80 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCC------------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred             CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcC------------ccCHhHhcCcccCCEEECCCCcCCccCHhHhc
Confidence            34555565555554333221  34555555555443            23332344455555555555555544444455


Q ss_pred             CCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhh
Q 048635          373 NCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMR  452 (562)
Q Consensus       373 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~  452 (562)
                      .+++|++|++++|++++..+..|..+++|++|++++|.+.+..  +..+..+++|++|++++|++.              
T Consensus        81 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~--------------  144 (251)
T 3m19_A           81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP--SGVFDRLTKLKELRLNTNQLQ--------------  144 (251)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCC--------------
T ss_pred             cCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcC--hhHhccCCcccEEECcCCcCC--------------
Confidence            5555555555555555444444445555555555555554332  233344444555555444442              


Q ss_pred             hhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCccc
Q 048635          453 YQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS  509 (562)
Q Consensus       453 ~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~  509 (562)
                               +..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|+++
T Consensus       145 ---------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          145 ---------SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             ---------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             ---------ccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence                     111223444444444444444444433344444444444444444444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=4.9e-24  Score=213.89  Aligned_cols=251  Identities=14%  Similarity=0.159  Sum_probs=174.9

Q ss_pred             CCCCCcCCCCCcEEEccCCcccccC----CccCCCCCCCCeeeCcCCccc---ccCC--------CCCCCCCCCEEEcCC
Q 048635          260 LPDPIGILKYLTRVDLRSCSFTGPI----PTSTTNLTQLFHVDFSSNHFS---GPIP--------SFHESRNLNYLDLSS  324 (562)
Q Consensus       260 ~~~~~~~~~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~~~---~~~~--------~~~~~~~L~~L~l~~  324 (562)
                      ++..+..+++|++|++++|.+++..    +..+..+++|++|++++|.+.   +..|        .+..+++|++|++++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            3445556677777777777776542    233566777777777775433   2211        124677888888888


Q ss_pred             CCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccC----CCC---------CCCCEEEcccCCCCC-c
Q 048635          325 NNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSL----ANC---------NMLQVLDFRNNHISD-N  390 (562)
Q Consensus       325 n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l----~~l---------~~L~~L~L~~n~l~~-~  390 (562)
                      |.++..      . ...++.. +..+++|++|++++|.+++..+..+    ..+         ++|++|++++|++++ .
T Consensus       104 n~l~~~------~-~~~l~~~-l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~  175 (386)
T 2ca6_A          104 NAFGPT------A-QEPLIDF-LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS  175 (386)
T ss_dssp             CCCCTT------T-HHHHHHH-HHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred             CcCCHH------H-HHHHHHH-HHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence            876510      0 0013333 5667788899999888865433333    333         889999999999973 3


Q ss_pred             ch---HHhhcCCCCCEEEccCccccee--cCC-CCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccc
Q 048635          391 FP---CWLRNASSLQVLVLRSNNFSGH--ISY-PRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQA  464 (562)
Q Consensus       391 ~~---~~l~~l~~L~~L~l~~n~l~~~--~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  464 (562)
                      .+   ..+..+++|++|++++|.+...  ..+ +..+..+++|++|++++|.++...                   ...+
T Consensus       176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g-------------------~~~l  236 (386)
T 2ca6_A          176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG-------------------SSAL  236 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH-------------------HHHH
T ss_pred             HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH-------------------HHHH
Confidence            34   4577889999999999988721  111 337778899999999999874211                   1334


Q ss_pred             cccccCcCCCCEEeCcCCcCccC----cChhcc--CCCCCCeeeCCCCcccc----cChhhh-cCCCCCCeEeCcCCcce
Q 048635          465 TEEMGRFKSLYALNMSHNALTGS----IPSSFG--NLKQIESLDLSMNNLSG----KIPAQL-ASLNFLSVLNLSYNNLV  533 (562)
Q Consensus       465 ~~~l~~l~~L~~L~Ls~n~i~~~----~p~~l~--~l~~L~~L~Ls~n~l~~----~~p~~l-~~l~~L~~L~l~~n~l~  533 (562)
                      +..+..+++|+.|+|++|.+++.    +|..+.  .+++|++|+|++|++++    .+|..+ .++++|++|++++|+++
T Consensus       237 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            56678889999999999999865    466664  38999999999999997    477777 66899999999999998


Q ss_pred             ecCC
Q 048635          534 GQIP  537 (562)
Q Consensus       534 ~~~p  537 (562)
                      +..|
T Consensus       317 ~~~~  320 (386)
T 2ca6_A          317 EEDD  320 (386)
T ss_dssp             TTSH
T ss_pred             cchh
Confidence            6553

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=1.3e-23  Score=208.71  Aligned_cols=257  Identities=17%  Similarity=0.171  Sum_probs=131.1

Q ss_pred             EEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCC----ccCCCCC-CCCeeeCcCCcccccCC-CCCC-----CCCC
Q 048635          249 LNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIP----TSTTNLT-QLFHVDFSSNHFSGPIP-SFHE-----SRNL  317 (562)
Q Consensus       249 L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~l~~l~-~L~~L~l~~n~~~~~~~-~~~~-----~~~L  317 (562)
                      +.++.|.+++.+|..+...++|++|++++|.+++..+    ..+..++ +|++|++++|.+.+..+ .+..     .++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            3444555554444444444445555555555554333    3444455 55566665555554322 1111     1556


Q ss_pred             CEEEcCCCCCcceEECCCCcCcccCCcc---ccCCC-CCcCEEECcCCcccccCCcc----CCC-CCCCCEEEcccCCCC
Q 048635          318 NYLDLSSNNLNGVLNLGRNNLNGTLSDI---IFPRN-CGLHILDLSGNQLQGVVPKS----LAN-CNMLQVLDFRNNHIS  388 (562)
Q Consensus       318 ~~L~l~~n~l~~~l~l~~~~~~~~~~~~---~~~~~-~~L~~L~L~~n~l~~~~~~~----l~~-l~~L~~L~L~~n~l~  388 (562)
                      ++|++++|.++.           ..+..   .+..+ ++|++|++++|.+++..+..    +.. .++|++|++++|.++
T Consensus        83 ~~L~Ls~n~l~~-----------~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  151 (362)
T 3goz_A           83 TSLNLSGNFLSY-----------KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG  151 (362)
T ss_dssp             CEEECCSSCGGG-----------SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred             cEEECcCCcCCh-----------HHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence            666666655541           11110   12222 45666666666665544332    222 246666666666666


Q ss_pred             Ccc----hHHhhcCC-CCCEEEccCcccceecC--CCCCCCCC-CCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCC
Q 048635          389 DNF----PCWLRNAS-SLQVLVLRSNNFSGHIS--YPRNNVSW-PLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRC  460 (562)
Q Consensus       389 ~~~----~~~l~~l~-~L~~L~l~~n~l~~~~~--~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~  460 (562)
                      +..    +..+..++ +|++|++++|.+.+...  +...+..+ ++|++|++++|.+++...                  
T Consensus       152 ~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~------------------  213 (362)
T 3goz_A          152 IKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY------------------  213 (362)
T ss_dssp             GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH------------------
T ss_pred             HHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH------------------
Confidence            432    23334444 66666666666653220  00122233 366777777776643221                  


Q ss_pred             cccccccccC-cCCCCEEeCcCCcCccCcC----hhccCCCCCCeeeCCCCcccccC-------hhhhcCCCCCCeEeCc
Q 048635          461 RDQATEEMGR-FKSLYALNMSHNALTGSIP----SSFGNLKQIESLDLSMNNLSGKI-------PAQLASLNFLSVLNLS  528 (562)
Q Consensus       461 ~~~~~~~l~~-l~~L~~L~Ls~n~i~~~~p----~~l~~l~~L~~L~Ls~n~l~~~~-------p~~l~~l~~L~~L~l~  528 (562)
                       ..++..+.. .++|++|++++|.+++..+    ..+..+++|++|++++|++.+..       +..+..+++|++||++
T Consensus       214 -~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~  292 (362)
T 3goz_A          214 -AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKN  292 (362)
T ss_dssp             -HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTT
T ss_pred             -HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecC
Confidence             112333433 2467777777777765433    23455677777777777744332       2345566667777777


Q ss_pred             CCcceec
Q 048635          529 YNNLVGQ  535 (562)
Q Consensus       529 ~n~l~~~  535 (562)
                      +|++...
T Consensus       293 ~N~l~~~  299 (362)
T 3goz_A          293 GKEIHPS  299 (362)
T ss_dssp             SCBCCGG
T ss_pred             CCcCCCc
Confidence            7776544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=5.2e-21  Score=185.16  Aligned_cols=195  Identities=21%  Similarity=0.289  Sum_probs=130.0

Q ss_pred             CcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCC
Q 048635          264 IGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLS  343 (562)
Q Consensus       264 ~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~  343 (562)
                      ...+++|++|++++|.++. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.++            .++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~------------~~~  101 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLK------------NVS  101 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCS------------CCG
T ss_pred             HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCC------------Cch
Confidence            3456778888888887773 33 46777888888888888776554 677777888887777765            222


Q ss_pred             ccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCC
Q 048635          344 DIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVS  423 (562)
Q Consensus       344 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~  423 (562)
                        .+..+++|+.|++++|.+++. + .+..+++|++|++++|++++..+  +..+++|++|++++|.+.+..   . +..
T Consensus       102 --~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~---~-l~~  171 (308)
T 1h6u_A          102 --AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT---P-LAN  171 (308)
T ss_dssp             --GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG---G-GTT
T ss_pred             --hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCCh---h-hcC
Confidence              266677777777777777643 2 36777777777777777776443  667777777777777766433   1 556


Q ss_pred             CCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeC
Q 048635          424 WPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDL  503 (562)
Q Consensus       424 ~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~L  503 (562)
                      +++|++|++++|++.+                        ++. +..+++|++|++++|.+++..  .+..+++|+.|++
T Consensus       172 l~~L~~L~l~~n~l~~------------------------~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l  224 (308)
T 1h6u_A          172 LSKLTTLKADDNKISD------------------------ISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTL  224 (308)
T ss_dssp             CTTCCEEECCSSCCCC------------------------CGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEE
T ss_pred             CCCCCEEECCCCccCc------------------------Chh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEc
Confidence            6677777777776632                        111 555666777777777766443  2566677777777


Q ss_pred             CCCcccc
Q 048635          504 SMNNLSG  510 (562)
Q Consensus       504 s~n~l~~  510 (562)
                      ++|++++
T Consensus       225 ~~N~i~~  231 (308)
T 1h6u_A          225 TNQTITN  231 (308)
T ss_dssp             EEEEEEC
T ss_pred             cCCeeec
Confidence            7776663

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=1.5e-22  Score=199.13  Aligned_cols=235  Identities=14%  Similarity=0.196  Sum_probs=140.1

Q ss_pred             CCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCccccc-CC-CCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCcc
Q 048635          268 KYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGP-IP-SFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDI  345 (562)
Q Consensus       268 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~-~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~  345 (562)
                      +.++.|++++|.+.+..+. +..+++|++|++++|.+.+. .+ .+..+++|++|++++|.++           +..+..
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~-----------~~~~~~  137 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS-----------DPIVNT  137 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCC-----------HHHHHH
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccC-----------HHHHHH
Confidence            3444444444444433222 33344555555555544321 11 2244455555555555433           122222


Q ss_pred             ccCCCCCcCEEECcCC-ccccc-CCccCCCCCCCCEEEcccC-CCCCc-chHHhhcCC-CCCEEEccCcc--cceecCCC
Q 048635          346 IFPRNCGLHILDLSGN-QLQGV-VPKSLANCNMLQVLDFRNN-HISDN-FPCWLRNAS-SLQVLVLRSNN--FSGHISYP  418 (562)
Q Consensus       346 ~~~~~~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~-~L~~L~l~~n~--l~~~~~~~  418 (562)
                       +..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. .+..+..++ +|++|++++|.  ++. ..++
T Consensus       138 -l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~-~~l~  215 (336)
T 2ast_B          138 -LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK-SDLS  215 (336)
T ss_dssp             -HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH-HHHH
T ss_pred             -HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH-HHHH
Confidence             455666777777777 45542 4445666777888888888 77653 456677777 88888888874  331 1113


Q ss_pred             CCCCCCCCCCEEEcCCCc-CCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCc-CccCcChhccCCC
Q 048635          419 RNNVSWPLLQIVDFASNK-FGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNA-LTGSIPSSFGNLK  496 (562)
Q Consensus       419 ~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~p~~l~~l~  496 (562)
                      ..+..+++|++|++++|. +                       ++..+..+..+++|+.|++++|. ++......+..++
T Consensus       216 ~~~~~~~~L~~L~l~~~~~l-----------------------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~  272 (336)
T 2ast_B          216 TLVRRCPNLVHLDLSDSVML-----------------------KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP  272 (336)
T ss_dssp             HHHHHCTTCSEEECTTCTTC-----------------------CGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCT
T ss_pred             HHHhhCCCCCEEeCCCCCcC-----------------------CHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCC
Confidence            445567788888888887 4                       23445567778888899998884 4333333677888


Q ss_pred             CCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceecCCCCCCC
Q 048635          497 QIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKHV  542 (562)
Q Consensus       497 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~  542 (562)
                      +|++|++++| ++......+.  .+|+.|++++|++++..|.....
T Consensus       273 ~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          273 TLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             TCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCSS
T ss_pred             CCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCcccc
Confidence            8999999888 5543333332  24666778888998888876543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=3.2e-21  Score=179.73  Aligned_cols=195  Identities=18%  Similarity=0.203  Sum_probs=109.8

Q ss_pred             CCCeeeCcCCcccccCC-CCCCCCCCCEEEcCCCC-CcceEECCCCcCcccCCccccCCCCCcCEEECcC-CcccccCCc
Q 048635          293 QLFHVDFSSNHFSGPIP-SFHESRNLNYLDLSSNN-LNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSG-NQLQGVVPK  369 (562)
Q Consensus       293 ~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~-l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~  369 (562)
                      ++++|++++|.+++..+ .+..+++|++|++++|. ++            .++...|.++++|++|++++ |.+++..+.
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~------------~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~   99 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ------------QLESHSFYNLSKVTHIEIRNTRNLTYIDPD   99 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC------------EECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc------------eeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence            34444444444443322 23344444444444443 33            33333355555566666665 555555555


Q ss_pred             cCCCCCCCCEEEcccCCCCCcchHHhhcCCCCC---EEEccCc-ccceecCCCCCCCCCCCCC-EEEcCCCcCCCcCChh
Q 048635          370 SLANCNMLQVLDFRNNHISDNFPCWLRNASSLQ---VLVLRSN-NFSGHISYPRNNVSWPLLQ-IVDFASNKFGGRLSQK  444 (562)
Q Consensus       370 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~  444 (562)
                      .|..+++|++|++++|++++ +|. +..+++|+   +|++++| .+....  +..+..+++|+ +|++++|++.      
T Consensus       100 ~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~--~~~~~~l~~L~~~L~l~~n~l~------  169 (239)
T 2xwt_C          100 ALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIP--VNAFQGLCNETLTLKLYNNGFT------  169 (239)
T ss_dssp             SEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEEC--TTTTTTTBSSEEEEECCSCCCC------
T ss_pred             HhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcC--cccccchhcceeEEEcCCCCCc------
Confidence            55666666666666666655 333 55555665   6666666 565544  44455666666 6666666652      


Q ss_pred             hhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCc-CccCcChhccCC-CCCCeeeCCCCcccccChhhhcCCCCC
Q 048635          445 CSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNA-LTGSIPSSFGNL-KQIESLDLSMNNLSGKIPAQLASLNFL  522 (562)
Q Consensus       445 ~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~p~~l~~l-~~L~~L~Ls~n~l~~~~p~~l~~l~~L  522 (562)
                                        .+|......++|+.|++++|+ +++..+..|..+ ++|+.|++++|++++ +|..  .+++|
T Consensus       170 ------------------~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L  228 (239)
T 2xwt_C          170 ------------------SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHL  228 (239)
T ss_dssp             ------------------EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTC
T ss_pred             ------------------ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccC
Confidence                              122222222567777777774 765555667777 777777777777773 4432  56677


Q ss_pred             CeEeCcCC
Q 048635          523 SVLNLSYN  530 (562)
Q Consensus       523 ~~L~l~~n  530 (562)
                      +.|+++++
T Consensus       229 ~~L~l~~~  236 (239)
T 2xwt_C          229 KELIARNT  236 (239)
T ss_dssp             SEEECTTC
T ss_pred             ceeeccCc
Confidence            77777765

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=1.3e-20  Score=176.91  Aligned_cols=159  Identities=18%  Similarity=0.202  Sum_probs=89.0

Q ss_pred             CcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEE
Q 048635          352 GLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVD  431 (562)
Q Consensus       352 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~  431 (562)
                      .++.|++++|.+++..+..+..+++|++|++++|++.+..+..|..+++|++|++++|.+....  +..+..+++|++|+
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~  113 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP--LGVFDHLTQLDKLY  113 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEE
T ss_pred             CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccC--hhHhcccCCCCEEE
Confidence            4556666666655555555555666666666666665555555555566666666666555433  34445556666666


Q ss_pred             cCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCccccc
Q 048635          432 FASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGK  511 (562)
Q Consensus       432 l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~  511 (562)
                      +++|+++                       +..+..+..+++|++|++++|.+++..+..|..+++|++|+|++|++++.
T Consensus       114 L~~N~l~-----------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A          114 LGGNQLK-----------------------SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             CCSSCCC-----------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             cCCCcCC-----------------------CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence            6666552                       12222344555566666666666544444555566666666666666555


Q ss_pred             ChhhhcCCCCCCeEeCcCCcceec
Q 048635          512 IPAQLASLNFLSVLNLSYNNLVGQ  535 (562)
Q Consensus       512 ~p~~l~~l~~L~~L~l~~n~l~~~  535 (562)
                      .+..+..+++|++|++++|++.+.
T Consensus       171 ~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          171 PHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CHHHHhCCCCCCEEEeeCCceeCC
Confidence            555555556666666666665544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=5.1e-22  Score=192.77  Aligned_cols=231  Identities=17%  Similarity=0.202  Sum_probs=174.1

Q ss_pred             CCCcEEEccCCcccccCCc---cCCCCCCCCeeeCcCCcccccCCC-C--CCCCCCCEEEcCCCCCcceEECCCCcCccc
Q 048635          268 KYLTRVDLRSCSFTGPIPT---STTNLTQLFHVDFSSNHFSGPIPS-F--HESRNLNYLDLSSNNLNGVLNLGRNNLNGT  341 (562)
Q Consensus       268 ~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l~~n~~~~~~~~-~--~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~  341 (562)
                      ..++.+.+.++.++.....   .+..+++|++|++++|.+.+..+. +  ..+++|++|++++|.++..        ...
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~--------~~~  135 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATG--------RSW  135 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSST--------TSS
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccch--------hhh
Confidence            3578888888877532111   122346799999999999876554 3  7889999999999987620        001


Q ss_pred             CCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCc--c--hHHhhcCCCCCEEEccCcccceecCC
Q 048635          342 LSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDN--F--PCWLRNASSLQVLVLRSNNFSGHISY  417 (562)
Q Consensus       342 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~~~  417 (562)
                      ++...+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+.  .  +..+..+++|++|++++|.++.....
T Consensus       136 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~  215 (310)
T 4glp_A          136 LAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGV  215 (310)
T ss_dssp             HHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHH
T ss_pred             hHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHH
Confidence            1122245788999999999999988888999999999999999998652  1  12346789999999999998743321


Q ss_pred             CC-CCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCc---CCCCEEeCcCCcCccCcChhcc
Q 048635          418 PR-NNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRF---KSLYALNMSHNALTGSIPSSFG  493 (562)
Q Consensus       418 ~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l---~~L~~L~Ls~n~i~~~~p~~l~  493 (562)
                      +. .+..+++|++|++++|++.+.                       .|+.+..+   ++|++|++++|+++ .+|..+.
T Consensus       216 ~~~l~~~l~~L~~L~Ls~N~l~~~-----------------------~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~  271 (310)
T 4glp_A          216 CAALAAAGVQPHSLDLSHNSLRAT-----------------------VNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP  271 (310)
T ss_dssp             HHHHHHHTCCCSSEECTTSCCCCC-----------------------CCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC
T ss_pred             HHHHHhcCCCCCEEECCCCCCCcc-----------------------chhhHHhccCcCcCCEEECCCCCCC-chhhhhc
Confidence            11 235679999999999998543                       34444444   79999999999999 6777764


Q ss_pred             CCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCccee
Q 048635          494 NLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVG  534 (562)
Q Consensus       494 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~  534 (562)
                        ++|++|+|++|++++. |. +..+++|++|++++|+++.
T Consensus       272 --~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          272 --AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             --SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             --CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence              8999999999999953 43 6788999999999999874

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=3.5e-22  Score=196.53  Aligned_cols=242  Identities=18%  Similarity=0.252  Sum_probs=190.2

Q ss_pred             CcEEEccCCcccccCCccCCCC--CCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCccc-CCccc
Q 048635          270 LTRVDLRSCSFTGPIPTSTTNL--TQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGT-LSDII  346 (562)
Q Consensus       270 L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~-~~~~~  346 (562)
                      ++.++++++.+.   +..+..+  +.++.+++++|.+.+..+.+..+++|++|++++|.++           +. ++.. 
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~-----------~~~~~~~-  113 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE-----------VSTLHGI-  113 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEEC-----------HHHHHHH-
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcC-----------HHHHHHH-
Confidence            677888877765   3345555  7899999999999988888888999999999999765           22 4443 


Q ss_pred             cCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccC-CCCCc-chHHhhcCCCCCEEEccCc-ccceecCCCCCCCC
Q 048635          347 FPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNN-HISDN-FPCWLRNASSLQVLVLRSN-NFSGHISYPRNNVS  423 (562)
Q Consensus       347 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~  423 (562)
                      +..+++|++|++++|.+++..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++.. ++..+..
T Consensus       114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~  192 (336)
T 2ast_B          114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH-VQVAVAH  192 (336)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH-HHHHHHH
T ss_pred             HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH-HHHHHHh
Confidence            788899999999999998888888999999999999999 67763 6677889999999999999 877431 1445667


Q ss_pred             CC-CCCEEEcCCCc--CCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCc-CccCcChhccCCCCCC
Q 048635          424 WP-LLQIVDFASNK--FGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNA-LTGSIPSSFGNLKQIE  499 (562)
Q Consensus       424 ~~-~L~~L~l~~n~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~p~~l~~l~~L~  499 (562)
                      ++ +|++|++++|.  +++                      +.++..+..+++|++|++++|. +++..+..+..+++|+
T Consensus       193 l~~~L~~L~l~~~~~~~~~----------------------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~  250 (336)
T 2ast_B          193 VSETITQLNLSGYRKNLQK----------------------SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  250 (336)
T ss_dssp             SCTTCCEEECCSCGGGSCH----------------------HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cccCCCEEEeCCCcccCCH----------------------HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCC
Confidence            88 99999999994  421                      2345556778999999999999 7777888999999999


Q ss_pred             eeeCCCCc-ccccChhhhcCCCCCCeEeCcCCcceecCCCCC-----CCCccccchHHHHh
Q 048635          500 SLDLSMNN-LSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAK-----HVLPNFNLHRRQLQ  554 (562)
Q Consensus       500 ~L~Ls~n~-l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~-----~~~~~l~~~~~~l~  554 (562)
                      +|++++|. +.......+..+++|++|++++|     ++...     ..++.+++..+++.
T Consensus       251 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n~l~  306 (336)
T 2ast_B          251 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCSHFT  306 (336)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCCCSC
T ss_pred             EeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEecccCc
Confidence            99999995 43333336888999999999999     33321     33556666555544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=3.6e-21  Score=179.34  Aligned_cols=197  Identities=15%  Similarity=0.159  Sum_probs=164.2

Q ss_pred             CCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCc-ccccCCccCCCCCCCCEEEccc-CCCCCcc
Q 048635          314 SRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQ-LQGVVPKSLANCNMLQVLDFRN-NHISDNF  391 (562)
Q Consensus       314 ~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~  391 (562)
                      .+++++|++++|.++            .++...|.++++|+.|++++|. +++..+.+|..+++|++|++++ |++++..
T Consensus        30 ~~~l~~L~l~~n~l~------------~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~   97 (239)
T 2xwt_C           30 PPSTQTLKLIETHLR------------TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID   97 (239)
T ss_dssp             CTTCCEEEEESCCCS------------EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred             CCcccEEEEeCCcce------------EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence            348999999999887            6666668999999999999997 8877777899999999999999 9999877


Q ss_pred             hHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCC---EEEcCCC-cCCCcCChhhhhhhhhhhhhhhCCCccccccc
Q 048635          392 PCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQ---IVDFASN-KFGGRLSQKCSTTLGMRYQATNKRCRDQATEE  467 (562)
Q Consensus       392 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~---~L~l~~n-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  467 (562)
                      +..|..+++|++|++++|.+.+.   +. +..+++|+   +|++++| .+.                       +..+..
T Consensus        98 ~~~f~~l~~L~~L~l~~n~l~~l---p~-~~~l~~L~~L~~L~l~~N~~l~-----------------------~i~~~~  150 (239)
T 2xwt_C           98 PDALKELPLLKFLGIFNTGLKMF---PD-LTKVYSTDIFFILEITDNPYMT-----------------------SIPVNA  150 (239)
T ss_dssp             TTSEECCTTCCEEEEEEECCCSC---CC-CTTCCBCCSEEEEEEESCTTCC-----------------------EECTTT
T ss_pred             HHHhCCCCCCCEEeCCCCCCccc---cc-cccccccccccEEECCCCcchh-----------------------hcCccc
Confidence            78899999999999999999863   33 77788888   9999999 773                       333445


Q ss_pred             ccCcCCCC-EEeCcCCcCccCcChhccCCCCCCeeeCCCCc-ccccChhhhcCC-CCCCeEeCcCCcceecCCCCCCCCc
Q 048635          468 MGRFKSLY-ALNMSHNALTGSIPSSFGNLKQIESLDLSMNN-LSGKIPAQLASL-NFLSVLNLSYNNLVGQIPTAKHVLP  544 (562)
Q Consensus       468 l~~l~~L~-~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l-~~L~~L~l~~n~l~~~~p~~~~~~~  544 (562)
                      +..+++|+ .|++++|+++...+..|.. ++|++|++++|+ +++..+..+..+ ++|++|++++|++++..+..+..+.
T Consensus       151 ~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~  229 (239)
T 2xwt_C          151 FQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLK  229 (239)
T ss_dssp             TTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCS
T ss_pred             ccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCc
Confidence            78899999 9999999999443444555 899999999995 997778889999 9999999999999955555566666


Q ss_pred             cccchH
Q 048635          545 NFNLHR  550 (562)
Q Consensus       545 ~l~~~~  550 (562)
                      .+.+..
T Consensus       230 ~L~l~~  235 (239)
T 2xwt_C          230 ELIARN  235 (239)
T ss_dssp             EEECTT
T ss_pred             eeeccC
Confidence            666554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=6.3e-21  Score=185.06  Aligned_cols=201  Identities=17%  Similarity=0.169  Sum_probs=141.7

Q ss_pred             CCCcEEEccCCcccccCCccC--CCCCCCCeeeCcCCcccccCCC-----CCCCCCCCEEEcCCCCCcceEECCCCcCcc
Q 048635          268 KYLTRVDLRSCSFTGPIPTST--TNLTQLFHVDFSSNHFSGPIPS-----FHESRNLNYLDLSSNNLNGVLNLGRNNLNG  340 (562)
Q Consensus       268 ~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~~~~~~~~-----~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~  340 (562)
                      ++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+.     +..+++|++|++++|.+.            
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~------------  158 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP------------  158 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC------------
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc------------
Confidence            345555555555555555544  5555666666666665543221     234667777777777665            


Q ss_pred             cCCccccCCCCCcCEEECcCCccccc----CCccCCCCCCCCEEEcccCCCCCcch--H-HhhcCCCCCEEEccCcccce
Q 048635          341 TLSDIIFPRNCGLHILDLSGNQLQGV----VPKSLANCNMLQVLDFRNNHISDNFP--C-WLRNASSLQVLVLRSNNFSG  413 (562)
Q Consensus       341 ~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~--~-~l~~l~~L~~L~l~~n~l~~  413 (562)
                      .++...+..+++|++|++++|++.+.    .+..+..+++|++|++++|+++....  . .+..+++|++|++++|.+.+
T Consensus       159 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~  238 (310)
T 4glp_A          159 AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRA  238 (310)
T ss_dssp             CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCC
T ss_pred             hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCc
Confidence            44444477788888888888886542    12334678899999999999975322  1 35788999999999999987


Q ss_pred             ecCCCCCCCCC---CCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcCh
Q 048635          414 HISYPRNNVSW---PLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPS  490 (562)
Q Consensus       414 ~~~~~~~~~~~---~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~  490 (562)
                      ..  |..+..+   ++|++|++++|+++                        .+|..+.  ++|++|++++|++++. |.
T Consensus       239 ~~--p~~~~~~~~~~~L~~L~Ls~N~l~------------------------~lp~~~~--~~L~~L~Ls~N~l~~~-~~  289 (310)
T 4glp_A          239 TV--NPSAPRCMWSSALNSLNLSFAGLE------------------------QVPKGLP--AKLRVLDLSSNRLNRA-PQ  289 (310)
T ss_dssp             CC--CSCCSSCCCCTTCCCEECCSSCCC------------------------SCCSCCC--SCCSCEECCSCCCCSC-CC
T ss_pred             cc--hhhHHhccCcCcCCEEECCCCCCC------------------------chhhhhc--CCCCEEECCCCcCCCC-ch
Confidence            64  5555555   79999999999984                        3344443  7999999999999954 43


Q ss_pred             hccCCCCCCeeeCCCCcccc
Q 048635          491 SFGNLKQIESLDLSMNNLSG  510 (562)
Q Consensus       491 ~l~~l~~L~~L~Ls~n~l~~  510 (562)
                       +..+++|+.|++++|++++
T Consensus       290 -~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          290 -PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             -TTSCCCCSCEECSSTTTSC
T ss_pred             -hhhCCCccEEECcCCCCCC
Confidence             6789999999999999974

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=2.3e-20  Score=180.54  Aligned_cols=195  Identities=24%  Similarity=0.336  Sum_probs=156.2

Q ss_pred             CCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCE
Q 048635          240 FPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNY  319 (562)
Q Consensus       240 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~  319 (562)
                      ...+++|++|++++|.++.. + .+..+++|++|++++|.+++..+  +..+++|++|++++|.+.+. +.+..+++|++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~  111 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-SAIAGLQSIKT  111 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-GGGTTCTTCCE
T ss_pred             HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-hhhcCCCCCCE
Confidence            34477899999999988753 3 57888999999999998885433  88889999999999988754 46788889999


Q ss_pred             EEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCC
Q 048635          320 LDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNAS  399 (562)
Q Consensus       320 L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~  399 (562)
                      |++++|.++            .++.  +..+++|+.|++++|.+++..+  +..+++|++|++++|++++..+  +..++
T Consensus       112 L~l~~n~l~------------~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~  173 (308)
T 1h6u_A          112 LDLTSTQIT------------DVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLS  173 (308)
T ss_dssp             EECTTSCCC------------CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCT
T ss_pred             EECCCCCCC------------Cchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCC
Confidence            999998876            3332  7788889999999998885433  7788999999999999988544  78899


Q ss_pred             CCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeC
Q 048635          400 SLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNM  479 (562)
Q Consensus       400 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L  479 (562)
                      +|++|++++|.+.+..    .+..+++|++|++++|++.+                        .+ .+..+++|+.|++
T Consensus       174 ~L~~L~l~~n~l~~~~----~l~~l~~L~~L~L~~N~l~~------------------------~~-~l~~l~~L~~L~l  224 (308)
T 1h6u_A          174 KLTTLKADDNKISDIS----PLASLPNLIEVHLKNNQISD------------------------VS-PLANTSNLFIVTL  224 (308)
T ss_dssp             TCCEEECCSSCCCCCG----GGGGCTTCCEEECTTSCCCB------------------------CG-GGTTCTTCCEEEE
T ss_pred             CCCEEECCCCccCcCh----hhcCCCCCCEEEccCCccCc------------------------cc-cccCCCCCCEEEc
Confidence            9999999999887644    26788899999999998842                        22 2678889999999


Q ss_pred             cCCcCcc
Q 048635          480 SHNALTG  486 (562)
Q Consensus       480 s~n~i~~  486 (562)
                      ++|.+++
T Consensus       225 ~~N~i~~  231 (308)
T 1h6u_A          225 TNQTITN  231 (308)
T ss_dssp             EEEEEEC
T ss_pred             cCCeeec
Confidence            9999884

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.84  E-value=5.5e-23  Score=206.26  Aligned_cols=246  Identities=15%  Similarity=0.189  Sum_probs=189.7

Q ss_pred             cCCccCCCCCCCCeeeCcCCcccccC-----CCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccc------cCCCC
Q 048635          283 PIPTSTTNLTQLFHVDFSSNHFSGPI-----PSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDII------FPRNC  351 (562)
Q Consensus       283 ~~~~~l~~l~~L~~L~l~~n~~~~~~-----~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~------~~~~~  351 (562)
                      .++..+..+++|++|++++|.+....     ..+..+++|++|++++|.+.        ++.+.+|..+      +..++
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~--------~l~~~~~~~~~~l~~~l~~~~   94 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG--------RVKDEIPEALRLLLQALLKCP   94 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTT--------SCGGGSHHHHHHHHHHHTTCT
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccC--------ccccchhHHHHHHHHHHhhCC
Confidence            45566778899999999999987632     23678999999999998664        4455556542      47889


Q ss_pred             CcCEEECcCCcccc----cCCccCCCCCCCCEEEcccCCCCCcchHHh----hcC---------CCCCEEEccCccccee
Q 048635          352 GLHILDLSGNQLQG----VVPKSLANCNMLQVLDFRNNHISDNFPCWL----RNA---------SSLQVLVLRSNNFSGH  414 (562)
Q Consensus       352 ~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l----~~l---------~~L~~L~l~~n~l~~~  414 (562)
                      +|++|++++|.+++    .++..+..+++|++|+|++|.+++..+..+    ..+         ++|++|++++|++...
T Consensus        95 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~  174 (386)
T 2ca6_A           95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG  174 (386)
T ss_dssp             TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred             cccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH
Confidence            99999999999987    366778889999999999999976444443    334         8999999999998622


Q ss_pred             --cCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCc----cCc
Q 048635          415 --ISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALT----GSI  488 (562)
Q Consensus       415 --~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~----~~~  488 (562)
                        ..+...+..+++|++|++++|+++..-.                  ....+..+..+++|+.|+|++|.++    ..+
T Consensus       175 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~------------------~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l  236 (386)
T 2ca6_A          175 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGI------------------EHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL  236 (386)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSCCCHHHH------------------HHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcCEEECcCCCCCHhHH------------------HHHHHHHhhcCCCccEEECcCCCCCcHHHHHH
Confidence              1112455678899999999999842100                  0122336788999999999999996    567


Q ss_pred             ChhccCCCCCCeeeCCCCccccc----ChhhhcC--CCCCCeEeCcCCccee----cCCCCC----CCCccccchHHHHh
Q 048635          489 PSSFGNLKQIESLDLSMNNLSGK----IPAQLAS--LNFLSVLNLSYNNLVG----QIPTAK----HVLPNFNLHRRQLQ  554 (562)
Q Consensus       489 p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~--l~~L~~L~l~~n~l~~----~~p~~~----~~~~~l~~~~~~l~  554 (562)
                      |..+..+++|++|+|++|++++.    +|..+..  +++|++|++++|++++    .+|...    ..+..+++.+|++.
T Consensus       237 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            88899999999999999999875    5667744  8999999999999997    466543    66777777776654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.84  E-value=1.1e-22  Score=201.98  Aligned_cols=121  Identities=17%  Similarity=0.169  Sum_probs=60.8

Q ss_pred             CcCEEECcCCcccccCCcc----CCCC-CCCCEEEcccCCCCCc----chHHhhc-CCCCCEEEccCcccceecC--CCC
Q 048635          352 GLHILDLSGNQLQGVVPKS----LANC-NMLQVLDFRNNHISDN----FPCWLRN-ASSLQVLVLRSNNFSGHIS--YPR  419 (562)
Q Consensus       352 ~L~~L~L~~n~l~~~~~~~----l~~l-~~L~~L~L~~n~l~~~----~~~~l~~-l~~L~~L~l~~n~l~~~~~--~~~  419 (562)
                      +|++|++++|.+++..+..    +..+ ++|++|+|++|.+.+.    ++..+.. .++|++|++++|.+.....  +..
T Consensus       168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  247 (362)
T 3goz_A          168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL  247 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHH
T ss_pred             cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHH
Confidence            5666666666665444332    2233 3666666666666552    2333333 3466666666666653210  112


Q ss_pred             CCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCc
Q 048635          420 NNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSI  488 (562)
Q Consensus       420 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~  488 (562)
                      .+..+++|++|++++|.+.+..+..+                ..++..+..+++|++|++++|.+.+..
T Consensus       248 ~~~~l~~L~~L~L~~n~l~~i~~~~~----------------~~l~~~~~~l~~L~~LdL~~N~l~~~~  300 (362)
T 3goz_A          248 LKDSLKHLQTVYLDYDIVKNMSKEQC----------------KALGAAFPNIQKIILVDKNGKEIHPSH  300 (362)
T ss_dssp             TTTTTTTCSEEEEEHHHHTTCCHHHH----------------HHHHTTSTTCCEEEEECTTSCBCCGGG
T ss_pred             HHhcCCCccEEEeccCCccccCHHHH----------------HHHHHHhccCCceEEEecCCCcCCCcc
Confidence            33445556666666665432222211                122334455566666666666665443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=1.9e-19  Score=163.82  Aligned_cols=161  Identities=16%  Similarity=0.141  Sum_probs=103.3

Q ss_pred             CcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEE
Q 048635          352 GLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVD  431 (562)
Q Consensus       352 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~  431 (562)
                      +++.|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+.+..  +..+..+++|++|+
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP--NGVFDKLTQLKELA  106 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEE
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccC--HhHhcCccCCCEEE
Confidence            4666666666666555555666666666666666666655555666666777777666666443  34456666777777


Q ss_pred             cCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCccccc
Q 048635          432 FASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGK  511 (562)
Q Consensus       432 l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~  511 (562)
                      +++|++.                       +..+..+..+++|+.|++++|.+++..+..|..+++|++|++++|.+.+ 
T Consensus       107 L~~N~l~-----------------------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-  162 (208)
T 2o6s_A          107 LNTNQLQ-----------------------SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-  162 (208)
T ss_dssp             CCSSCCC-----------------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-
T ss_pred             cCCCcCc-----------------------ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-
Confidence            7776663                       2223335666777777777777775555556777777777777776653 


Q ss_pred             ChhhhcCCCCCCeEeCcCCcceecCCCCCCCCc
Q 048635          512 IPAQLASLNFLSVLNLSYNNLVGQIPTAKHVLP  544 (562)
Q Consensus       512 ~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~  544 (562)
                            .+++|++|+++.|+++|.+|..+..++
T Consensus       163 ------~~~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          163 ------TCPGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             ------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             ------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence                  345677777777777777776555443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=2.6e-19  Score=162.95  Aligned_cols=143  Identities=19%  Similarity=0.175  Sum_probs=80.4

Q ss_pred             cCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCC
Q 048635          347 FPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPL  426 (562)
Q Consensus       347 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~  426 (562)
                      +..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..  +..+..+++
T Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~  125 (208)
T 2o6s_A           48 FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLP--DGVFDKLTQ  125 (208)
T ss_dssp             TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTT
T ss_pred             hcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccC--HhHhccCCc
Confidence            445555555555555555444444555555666666666555544444555566666666666555433  334455566


Q ss_pred             CCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCC
Q 048635          427 LQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMN  506 (562)
Q Consensus       427 L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n  506 (562)
                      |++|++++|+++                       +..+..+..+++|+.|++++|.+.+       .+++|+.|+++.|
T Consensus       126 L~~L~l~~N~l~-----------------------~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n  175 (208)
T 2o6s_A          126 LKDLRLYQNQLK-----------------------SVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWIN  175 (208)
T ss_dssp             CCEEECCSSCCS-----------------------CCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHH
T ss_pred             CCEEECCCCccc-----------------------eeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHH
Confidence            666666666552                       1222334556666666666665552       3456667777777


Q ss_pred             cccccChhhhcCCCC
Q 048635          507 NLSGKIPAQLASLNF  521 (562)
Q Consensus       507 ~l~~~~p~~l~~l~~  521 (562)
                      +++|.+|+.++.++.
T Consensus       176 ~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          176 KHSGVVRNSAGSVAP  190 (208)
T ss_dssp             HCTTTBBCTTSSBCT
T ss_pred             hCCceeeccCccccC
Confidence            777766666655544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=1e-18  Score=172.43  Aligned_cols=220  Identities=15%  Similarity=0.108  Sum_probs=95.7

Q ss_pred             CCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCC--CCCCCCCCCE-EEcCCCCCcceEECCCCcCcccCCcc
Q 048635          269 YLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIP--SFHESRNLNY-LDLSSNNLNGVLNLGRNNLNGTLSDI  345 (562)
Q Consensus       269 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~-L~l~~n~l~~~l~l~~~~~~~~~~~~  345 (562)
                      ++++|++++|+++...+..|.++++|++|++++|.+.+.++  .|..++++.+ +.+..|.++            .++..
T Consensus        31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~------------~l~~~   98 (350)
T 4ay9_X           31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL------------YINPE   98 (350)
T ss_dssp             TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC------------EECTT
T ss_pred             CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc------------ccCch
Confidence            34444444444443333334444444444444444433222  2334444333 223333333            33333


Q ss_pred             ccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEccc-CCCCCcchHHhhcCC-CCCEEEccCcccceecCCCCCCCC
Q 048635          346 IFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRN-NHISDNFPCWLRNAS-SLQVLVLRSNNFSGHISYPRNNVS  423 (562)
Q Consensus       346 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~  423 (562)
                      .|..+++|+.|++++|++....+..+....++..+++.+ +.+....+..|..++ .++.|++++|+++..   +.....
T Consensus        99 ~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i---~~~~f~  175 (350)
T 4ay9_X           99 AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI---HNSAFN  175 (350)
T ss_dssp             SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE---CTTSST
T ss_pred             hhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC---Chhhcc
Confidence            355555555555555555544444444444455555543 234333333333332 355555555555533   223333


Q ss_pred             CCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeC
Q 048635          424 WPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDL  503 (562)
Q Consensus       424 ~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~L  503 (562)
                      ..+|+++++++++..+.+|                      +..|..+++|++|++++|+++...+..   +.+|+.|.+
T Consensus       176 ~~~L~~l~l~~~n~l~~i~----------------------~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~  230 (350)
T 4ay9_X          176 GTQLDELNLSDNNNLEELP----------------------NDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRA  230 (350)
T ss_dssp             TEEEEEEECTTCTTCCCCC----------------------TTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEEC
T ss_pred             ccchhHHhhccCCcccCCC----------------------HHHhccCcccchhhcCCCCcCccChhh---hccchHhhh
Confidence            4455555555433211111                      123455556666666666665322222   233333333


Q ss_pred             CCCcccccChhhhcCCCCCCeEeCcC
Q 048635          504 SMNNLSGKIPAQLASLNFLSVLNLSY  529 (562)
Q Consensus       504 s~n~l~~~~p~~l~~l~~L~~L~l~~  529 (562)
                      .++.--..+|. +.++++|+.+++++
T Consensus       231 l~~~~l~~lP~-l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          231 RSTYNLKKLPT-LEKLVALMEASLTY  255 (350)
T ss_dssp             TTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred             ccCCCcCcCCC-chhCcChhhCcCCC
Confidence            33222224442 45556666666554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.79  E-value=1.3e-18  Score=180.44  Aligned_cols=191  Identities=25%  Similarity=0.381  Sum_probs=152.9

Q ss_pred             CCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccC
Q 048635          269 YLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFP  348 (562)
Q Consensus       269 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~  348 (562)
                      +++.|++++|.+++ +|..+.  ++|++|++++|.+.. +|  ..+++|++|++++|.++            .+|.  +.
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~~-ip--~~l~~L~~L~Ls~N~l~------------~ip~--l~  119 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALIS-LP--ELPASLEYLDACDNRLS------------TLPE--LP  119 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCSC-CC--CCCTTCCEEECCSSCCS------------CCCC--CC
T ss_pred             CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCcc-cc--cccCCCCEEEccCCCCC------------Ccch--hh
Confidence            79999999999986 666553  789999999999984 44  56789999999999887            4665  33


Q ss_pred             CCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCC
Q 048635          349 RNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQ  428 (562)
Q Consensus       349 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~  428 (562)
                      .  +|+.|++++|.+++ +|.   .+++|+.|++++|.+++ +|.   .+++|++|++++|.+++.   +. +.  ++|+
T Consensus       120 ~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~l---p~-l~--~~L~  183 (571)
T 3cvr_A          120 A--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFL---PE-LP--ESLE  183 (571)
T ss_dssp             T--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC---CC-CC--TTCC
T ss_pred             c--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCc---ch-hh--CCCC
Confidence            3  79999999999986 555   68899999999999988 444   578999999999999864   34 43  8999


Q ss_pred             EEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccC-----cCCCCEEeCcCCcCccCcChhccCCCCCCeeeC
Q 048635          429 IVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGR-----FKSLYALNMSHNALTGSIPSSFGNLKQIESLDL  503 (562)
Q Consensus       429 ~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~-----l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~L  503 (562)
                      .|++++|+++ .+                       |. +..     .+.|+.|++++|.|+ .+|..+..+++|+.|+|
T Consensus       184 ~L~Ls~N~L~-~l-----------------------p~-~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L  237 (571)
T 3cvr_A          184 ALDVSTNLLE-SL-----------------------PA-VPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIIL  237 (571)
T ss_dssp             EEECCSSCCS-SC-----------------------CC-CC--------CCEEEECCSSCCC-CCCGGGGGSCTTEEEEC
T ss_pred             EEECcCCCCC-ch-----------------------hh-HHHhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEe
Confidence            9999999985 22                       22 222     233499999999999 67888888999999999


Q ss_pred             CCCcccccChhhhcCCCC
Q 048635          504 SMNNLSGKIPAQLASLNF  521 (562)
Q Consensus       504 s~n~l~~~~p~~l~~l~~  521 (562)
                      ++|++++.+|..+..++.
T Consensus       238 ~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          238 EDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             CSSSCCHHHHHHHHHHHH
T ss_pred             eCCcCCCcCHHHHHHhhc
Confidence            999999988888777543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=2.1e-18  Score=170.09  Aligned_cols=237  Identities=18%  Similarity=0.124  Sum_probs=180.0

Q ss_pred             cEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCC-CCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCC
Q 048635          271 TRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIP-SFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPR  349 (562)
Q Consensus       271 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~  349 (562)
                      ++++.+++.++ .+|..+  .+++++|++++|.++...+ .|.++++|++|++++|.+.           +.++..+|.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~-----------~~i~~~~f~~   77 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL-----------EVIEADVFSN   77 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTC-----------CEECTTSBCS
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCC-----------CccChhHhhc
Confidence            56777888887 566655  3689999999999997665 4789999999999999875           3567767888


Q ss_pred             CCCcCE-EECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccC-cccceecCCCCCCCCC-CC
Q 048635          350 NCGLHI-LDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRS-NNFSGHISYPRNNVSW-PL  426 (562)
Q Consensus       350 ~~~L~~-L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~-~~  426 (562)
                      ++++++ +.+.+|+++...+++|..+++|++|++++|++....+..+.....+..+++.+ +.+....  ...+..+ ..
T Consensus        78 L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~--~~~f~~~~~~  155 (350)
T 4ay9_X           78 LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE--RNSFVGLSFE  155 (350)
T ss_dssp             CTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC--TTSSTTSBSS
T ss_pred             chhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccc--ccchhhcchh
Confidence            888876 56677899988899999999999999999999987666666777888899865 5566554  4445554 46


Q ss_pred             CCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcC-CcCccCcChhccCCCCCCeeeCCC
Q 048635          427 LQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSH-NALTGSIPSSFGNLKQIESLDLSM  505 (562)
Q Consensus       427 L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~-n~i~~~~p~~l~~l~~L~~L~Ls~  505 (562)
                      ++.|++++|++.                        .++.......+|++|++++ |.++...++.|..+++|++|++++
T Consensus       156 l~~L~L~~N~i~------------------------~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~  211 (350)
T 4ay9_X          156 SVILWLNKNGIQ------------------------EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR  211 (350)
T ss_dssp             CEEEECCSSCCC------------------------EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT
T ss_pred             hhhhcccccccc------------------------CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCC
Confidence            899999999983                        3444455567899999986 566644446789999999999999


Q ss_pred             CcccccChhhhcCCCCCCeEeCcCCcceecCCC--CCCCCccccchH
Q 048635          506 NNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPT--AKHVLPNFNLHR  550 (562)
Q Consensus       506 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~--~~~~~~~l~~~~  550 (562)
                      |+++. +|.  ..+.+|+.|.+.++.-...+|.  .+..+..+++.+
T Consensus       212 N~l~~-lp~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          212 TRIHS-LPS--YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY  255 (350)
T ss_dssp             SCCCC-CCS--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred             CCcCc-cCh--hhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence            99994 553  2356777777777665667774  334444444443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.79  E-value=1.6e-18  Score=158.71  Aligned_cols=154  Identities=19%  Similarity=0.209  Sum_probs=92.6

Q ss_pred             CEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcch-HHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEc
Q 048635          354 HILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFP-CWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDF  432 (562)
Q Consensus       354 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l  432 (562)
                      +.+++++|.++. +|..+  ...+++|++++|++++..+ ..|..+++|++|++++|.+.+..  +..+..+++|++|++
T Consensus        14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~--~~~~~~l~~L~~L~L   88 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE--EGAFEGASGVNEILL   88 (220)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEEC
T ss_pred             CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC--HHHhCCCCCCCEEEC
Confidence            455555555553 33333  2334566666666655432 33556666666666666666544  445566666666666


Q ss_pred             CCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccC
Q 048635          433 ASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKI  512 (562)
Q Consensus       433 ~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  512 (562)
                      ++|.+.                       +..+..+..+++|++|++++|.+++..|..|..+++|++|+|++|++++..
T Consensus        89 s~N~l~-----------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  145 (220)
T 2v70_A           89 TSNRLE-----------------------NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA  145 (220)
T ss_dssp             CSSCCC-----------------------CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC
T ss_pred             CCCccC-----------------------ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC
Confidence            666652                       223344566666777777777776666666666777777777777776666


Q ss_pred             hhhhcCCCCCCeEeCcCCcceec
Q 048635          513 PAQLASLNFLSVLNLSYNNLVGQ  535 (562)
Q Consensus       513 p~~l~~l~~L~~L~l~~n~l~~~  535 (562)
                      |..+..+++|++|++++|++.+.
T Consensus       146 ~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          146 PGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             TTTTTTCTTCCEEECCSCCEECS
T ss_pred             HHHhcCCCCCCEEEecCcCCcCC
Confidence            66666677777777777766543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=1.6e-18  Score=171.68  Aligned_cols=156  Identities=22%  Similarity=0.146  Sum_probs=73.1

Q ss_pred             cCEEECcCCcccccCCccCC-CCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEE
Q 048635          353 LHILDLSGNQLQGVVPKSLA-NCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVD  431 (562)
Q Consensus       353 L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~  431 (562)
                      ++.|++++|.+++..+..+. .+++|++|+|++|++++..+..|..+++|++|+|++|++....  +..+..+++|++|+
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~  118 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLD--EFLFSDLQALEVLL  118 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEE
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCC--HHHhCCCcCCCEEE
Confidence            44444444444444444443 4445555555555554444444444555555555555544433  33444445555555


Q ss_pred             cCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhc---cCCCCCCeeeCCCCcc
Q 048635          432 FASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSF---GNLKQIESLDLSMNNL  508 (562)
Q Consensus       432 l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l---~~l~~L~~L~Ls~n~l  508 (562)
                      +++|++.                       +..+..+..+++|+.|+|++|.+++..+..|   ..+++|+.|+|++|++
T Consensus       119 L~~N~i~-----------------------~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A          119 LYNNHIV-----------------------VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             CCSSCCC-----------------------EECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred             CCCCccc-----------------------EECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence            5555442                       2223334445555555555555553222222   3455555555555555


Q ss_pred             cccChhhhcCCCC--CCeEeCcCCcce
Q 048635          509 SGKIPAQLASLNF--LSVLNLSYNNLV  533 (562)
Q Consensus       509 ~~~~p~~l~~l~~--L~~L~l~~n~l~  533 (562)
                      ++..+..+..++.  |+.|++++|++.
T Consensus       176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          176 KKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CccCHHHhhhccHhhcceEEecCCCcc
Confidence            5444444444444  255555555544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.78  E-value=2.3e-18  Score=157.74  Aligned_cols=133  Identities=22%  Similarity=0.285  Sum_probs=73.4

Q ss_pred             CcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEE
Q 048635          352 GLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVD  431 (562)
Q Consensus       352 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~  431 (562)
                      +++.|++++|.+++..+..|..+++|++|+|++|++.+..|..|..+++|++|++++|.+....  +..+..+++|++|+
T Consensus        33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~--~~~f~~l~~L~~L~  110 (220)
T 2v9t_B           33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP--KSLFEGLFSLQLLL  110 (220)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCC--TTTTTTCTTCCEEE
T ss_pred             CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccC--HhHccCCCCCCEEE
Confidence            4666666666666555556666666666666666666655556666666666666666665433  33344555555555


Q ss_pred             cCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCccc
Q 048635          432 FASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS  509 (562)
Q Consensus       432 l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~  509 (562)
                      +++|++.                       +..+..+..+++|+.|+|++|.+++..+..|..+++|+.|+|++|.+.
T Consensus       111 L~~N~l~-----------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          111 LNANKIN-----------------------CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCSSCCC-----------------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCCC-----------------------EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            5555542                       222334444555555555555555444444555555555555555543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.78  E-value=3.6e-18  Score=177.24  Aligned_cols=189  Identities=22%  Similarity=0.302  Sum_probs=152.1

Q ss_pred             CCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCC
Q 048635          245 YLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSS  324 (562)
Q Consensus       245 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~  324 (562)
                      +++.|++++|.+++ +|..+  +++|++|++++|.++ .+|   ..+++|++|++++|.+++.+. +..  +|++|++++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence            79999999999986 56544  378999999999998 566   457899999999999987444 543  899999999


Q ss_pred             CCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEE
Q 048635          325 NNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVL  404 (562)
Q Consensus       325 n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  404 (562)
                      |.++            .+|.    .+++|+.|++++|.+++ +|.   .+++|++|++++|++++ +|. +.  ++|++|
T Consensus       130 N~l~------------~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L  185 (571)
T 3cvr_A          130 NQLT------------MLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEAL  185 (571)
T ss_dssp             SCCS------------CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEE
T ss_pred             CcCC------------CCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEE
Confidence            9887            4555    46789999999999986 554   57899999999999988 555 55  899999


Q ss_pred             EccCcccceecCCCCCCCCCCCC-------CEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEE
Q 048635          405 VLRSNNFSGHISYPRNNVSWPLL-------QIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYAL  477 (562)
Q Consensus       405 ~l~~n~l~~~~~~~~~~~~~~~L-------~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L  477 (562)
                      ++++|.++..   +. +..  +|       +.|++++|+++                        .+|..+..+++|+.|
T Consensus       186 ~Ls~N~L~~l---p~-~~~--~L~~~~~~L~~L~Ls~N~l~------------------------~lp~~l~~l~~L~~L  235 (571)
T 3cvr_A          186 DVSTNLLESL---PA-VPV--RNHHSEETEIFFRCRENRIT------------------------HIPENILSLDPTCTI  235 (571)
T ss_dssp             ECCSSCCSSC---CC-CC----------CCEEEECCSSCCC------------------------CCCGGGGGSCTTEEE
T ss_pred             ECcCCCCCch---hh-HHH--hhhcccccceEEecCCCcce------------------------ecCHHHhcCCCCCEE
Confidence            9999999844   33 333  66       99999999983                        466777789999999


Q ss_pred             eCcCCcCccCcChhccCCCC
Q 048635          478 NMSHNALTGSIPSSFGNLKQ  497 (562)
Q Consensus       478 ~Ls~n~i~~~~p~~l~~l~~  497 (562)
                      +|++|.+++.+|..|..++.
T Consensus       236 ~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          236 ILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             ECCSSSCCHHHHHHHHHHHH
T ss_pred             EeeCCcCCCcCHHHHHHhhc
Confidence            99999999888888877654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=2.7e-18  Score=164.54  Aligned_cols=171  Identities=19%  Similarity=0.248  Sum_probs=93.6

Q ss_pred             CCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCC
Q 048635          289 TNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVP  368 (562)
Q Consensus       289 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  368 (562)
                      ..+++|+.|++++|.+... +.+..+++|++|++++|.++            .++.  +..+++|+.|++++|.+++ + 
T Consensus        43 ~~l~~L~~L~l~~~~i~~~-~~~~~l~~L~~L~L~~n~l~------------~~~~--l~~l~~L~~L~l~~n~l~~-~-  105 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLT------------DIKP--LANLKNLGWLFLDENKVKD-L-  105 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCC------------CCGG--GTTCTTCCEEECCSSCCCC-G-
T ss_pred             hhcCcccEEEccCCCcccC-hhHhcCCCCCEEEccCCccC------------CCcc--cccCCCCCEEECCCCcCCC-C-
Confidence            4556677777777766543 44556666666666666554            2222  5555666666666666653 2 


Q ss_pred             ccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhh
Q 048635          369 KSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTT  448 (562)
Q Consensus       369 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  448 (562)
                      ..+..+++|++|++++|++.+.  ..+..+++|++|++++|.+.+.    ..+..+++|++|++++|++.+         
T Consensus       106 ~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~L~~N~l~~---------  170 (291)
T 1h6t_A          106 SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQISD---------  170 (291)
T ss_dssp             GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCC---------
T ss_pred             hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc----hhhccCCCCCEEEccCCcccc---------
Confidence            2355666666666666666553  2355566666666666655532    234455555555555555421         


Q ss_pred             hhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCccc
Q 048635          449 LGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS  509 (562)
Q Consensus       449 ~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~  509 (562)
                                     +++ +..+++|+.|++++|.+++ ++ .+..+++|+.|++++|+++
T Consensus       171 ---------------~~~-l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          171 ---------------IVP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             ---------------CGG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred             ---------------chh-hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence                           111 4445555555555555553 22 2455555555555555554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=5.7e-18  Score=156.21  Aligned_cols=134  Identities=19%  Similarity=0.162  Sum_probs=78.9

Q ss_pred             CCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEE
Q 048635          351 CGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIV  430 (562)
Q Consensus       351 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L  430 (562)
                      ++|+.|++++|.+++..+..+..+++|++|+|++|++....+..|..+++|++|++++|.++...  +..+..+++|++|
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~--~~~~~~l~~L~~L  117 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP--SAVFDRLVHLKEL  117 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEE
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccC--hhHhCcchhhCeE
Confidence            45666666666666655666666666666666666666555555566666666666666665433  3444555666666


Q ss_pred             EcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccc
Q 048635          431 DFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG  510 (562)
Q Consensus       431 ~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~  510 (562)
                      ++++|++.                        .+|..+..+++|+.|++++|.+++..+..|..+++|+.|++++|.+..
T Consensus       118 ~Ls~N~l~------------------------~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          118 FMCCNKLT------------------------ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             ECCSSCCC------------------------SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             eccCCccc------------------------ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            66666552                        334445555566666666666654444455555666666666665553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=4.9e-18  Score=178.23  Aligned_cols=191  Identities=19%  Similarity=0.241  Sum_probs=139.7

Q ss_pred             CCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccC
Q 048635          269 YLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFP  348 (562)
Q Consensus       269 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~  348 (562)
                      .+..+.+..+.+.+..  .+..+++|+.|++++|.+... +.+..+++|+.|+|++|.+.            .++.  +.
T Consensus        22 ~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~Ls~N~l~------------~~~~--l~   84 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLT------------DIKP--LT   84 (605)
T ss_dssp             HHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCC-TTGGGCTTCCEEECTTSCCC------------CCGG--GG
T ss_pred             HHHHHhccCCCccccc--chhcCCCCCEEECcCCCCCCC-hHHccCCCCCEEEeeCCCCC------------CChh--hc
Confidence            4455566666665433  245678899999999888753 56778888999888888776            3333  66


Q ss_pred             CCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCC
Q 048635          349 RNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQ  428 (562)
Q Consensus       349 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~  428 (562)
                      .+++|+.|+|++|.+.+ ++ .+..+++|+.|+|++|++.+.  ..+..+++|+.|+|++|.+.+.    ..+..+++|+
T Consensus        85 ~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l----~~l~~l~~L~  156 (605)
T 1m9s_A           85 NLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI----TVLSRLTKLD  156 (605)
T ss_dssp             GCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC----GGGGSCTTCS
T ss_pred             cCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc----hhhcccCCCC
Confidence            77888888888888874 33 678888888888888888873  3477788888888888887753    4566778888


Q ss_pred             EEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcc
Q 048635          429 IVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNL  508 (562)
Q Consensus       429 ~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l  508 (562)
                      .|+|++|.+.+                       ..+  +..+++|+.|+|++|.+++. | .+..+++|+.|+|++|++
T Consensus       157 ~L~Ls~N~l~~-----------------------~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          157 TLSLEDNQISD-----------------------IVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             EEECCSSCCCC-----------------------CGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEE
T ss_pred             EEECcCCcCCC-----------------------chh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcC
Confidence            88888887732                       222  66777888888888888753 3 577788888888888887


Q ss_pred             ccc
Q 048635          509 SGK  511 (562)
Q Consensus       509 ~~~  511 (562)
                      ++.
T Consensus       210 ~~~  212 (605)
T 1m9s_A          210 LNK  212 (605)
T ss_dssp             ECC
T ss_pred             cCC
Confidence            753

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.75  E-value=5.6e-18  Score=152.49  Aligned_cols=154  Identities=14%  Similarity=0.232  Sum_probs=123.4

Q ss_pred             CCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCC
Q 048635          348 PRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLL  427 (562)
Q Consensus       348 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L  427 (562)
                      ..+++|+.|++++|.++ .++ .+..+++|++|++++|.+...  ..+..+++|++|++++|.+.+..  +..+..+++|
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~l~~l~~L  114 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDK--IPNLSGLTSL  114 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGG--SCCCTTCTTC
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCccc--ChhhcCCCCC
Confidence            34456888888888887 444 577888999999999977653  36778999999999999988655  6778889999


Q ss_pred             CEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCc-CccCcChhccCCCCCCeeeCCCC
Q 048635          428 QIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNA-LTGSIPSSFGNLKQIESLDLSMN  506 (562)
Q Consensus       428 ~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~p~~l~~l~~L~~L~Ls~n  506 (562)
                      ++|++++|+++                       +..+..+..+++|++|++++|. ++ .+| .+..+++|++|++++|
T Consensus       115 ~~L~Ls~n~i~-----------------------~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n  169 (197)
T 4ezg_A          115 TLLDISHSAHD-----------------------DSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFD  169 (197)
T ss_dssp             CEEECCSSBCB-----------------------GGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTB
T ss_pred             CEEEecCCccC-----------------------cHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCC
Confidence            99999999884                       3445667889999999999998 66 455 6899999999999999


Q ss_pred             cccccChhhhcCCCCCCeEeCcCCccee
Q 048635          507 NLSGKIPAQLASLNFLSVLNLSYNNLVG  534 (562)
Q Consensus       507 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~  534 (562)
                      ++++ ++ .+..+++|++|++++|++.+
T Consensus       170 ~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          170 GVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             CCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            9995 44 68899999999999999864

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=1.8e-17  Score=151.70  Aligned_cols=153  Identities=20%  Similarity=0.242  Sum_probs=103.5

Q ss_pred             CEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcC
Q 048635          354 HILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFA  433 (562)
Q Consensus       354 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~  433 (562)
                      +.++++++.++ .+|..+.  +++++|++++|++.+..+..|..+++|++|++++|.+.+..  +..+..+++|++|+++
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~--~~~~~~l~~L~~L~Ls   88 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA--PDAFQGLRSLNSLVLY   88 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC--TTTTTTCSSCCEEECC
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC--HHHhhCCcCCCEEECC
Confidence            45666666666 3444332  56777777777777665656777777777777777777655  6667777777777777


Q ss_pred             CCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccCh
Q 048635          434 SNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP  513 (562)
Q Consensus       434 ~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p  513 (562)
                      +|+++                       ...+..+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..+
T Consensus        89 ~N~l~-----------------------~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  145 (220)
T 2v9t_B           89 GNKIT-----------------------ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK  145 (220)
T ss_dssp             SSCCC-----------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CCcCC-----------------------ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence            77763                       1222335566777777777777776666777777777777777777776666


Q ss_pred             hhhcCCCCCCeEeCcCCccee
Q 048635          514 AQLASLNFLSVLNLSYNNLVG  534 (562)
Q Consensus       514 ~~l~~l~~L~~L~l~~n~l~~  534 (562)
                      ..+..+++|++|++++|++..
T Consensus       146 ~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          146 GTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             TTTTTCTTCCEEECCSSCEEC
T ss_pred             HHHhCCCCCCEEEeCCCCcCC
Confidence            667777777777777777653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=1e-17  Score=160.54  Aligned_cols=172  Identities=20%  Similarity=0.274  Sum_probs=123.9

Q ss_pred             cCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCc
Q 048635          265 GILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSD  344 (562)
Q Consensus       265 ~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~  344 (562)
                      ..+++|++|++++|.+.+. + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.++            .++.
T Consensus        43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~------------~~~~  107 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVK------------DLSS  107 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC------------CGGG
T ss_pred             hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCC------------CChh
Confidence            4567788888888877633 3 36777888888888888776554 777788888888887765            2332


Q ss_pred             cccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCC
Q 048635          345 IIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSW  424 (562)
Q Consensus       345 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~  424 (562)
                        +..+++|+.|++++|.+++.  ..+..+++|+.|++++|++++.  ..+..+++|++|++++|.+.+..  +  +..+
T Consensus       108 --l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~--~--l~~l  177 (291)
T 1h6t_A          108 --LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV--P--LAGL  177 (291)
T ss_dssp             --GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--G--GTTC
T ss_pred             --hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccch--h--hcCC
Confidence              66777788888888877753  4567778888888888888774  45777888888888888777544  2  6677


Q ss_pred             CCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCcc
Q 048635          425 PLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTG  486 (562)
Q Consensus       425 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~  486 (562)
                      ++|++|++++|.+++                        + +.+..+++|+.|++++|.++.
T Consensus       178 ~~L~~L~L~~N~i~~------------------------l-~~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          178 TKLQNLYLSKNHISD------------------------L-RALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             TTCCEEECCSSCCCB------------------------C-GGGTTCTTCSEEEEEEEEEEC
T ss_pred             CccCEEECCCCcCCC------------------------C-hhhccCCCCCEEECcCCcccC
Confidence            888888888887732                        2 236677788888888887774

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=4.9e-17  Score=149.90  Aligned_cols=157  Identities=22%  Similarity=0.215  Sum_probs=126.1

Q ss_pred             CcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEE
Q 048635          352 GLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVD  431 (562)
Q Consensus       352 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~  431 (562)
                      ..+.++.+++.++ .+|..+  .++|++|+|++|.+.+..+..|..+++|++|++++|.+....  +..+..+++|++|+
T Consensus        20 s~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~--~~~~~~l~~L~~L~   94 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP--VGVFDSLTQLTVLD   94 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEE
T ss_pred             eCCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC--hhhcccCCCcCEEE
Confidence            4567888888877 445444  378899999999998877888888999999999999887554  55677889999999


Q ss_pred             cCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCccccc
Q 048635          432 FASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGK  511 (562)
Q Consensus       432 l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~  511 (562)
                      +++|+++                       +..+..+..+++|++|++++|.++ .+|..+..+++|+.|+|++|++++.
T Consensus        95 Ls~N~l~-----------------------~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~  150 (229)
T 3e6j_A           95 LGTNQLT-----------------------VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSI  150 (229)
T ss_dssp             CCSSCCC-----------------------CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCC
T ss_pred             CCCCcCC-----------------------ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCcc
Confidence            9999883                       333445677889999999999998 7788888899999999999999876


Q ss_pred             ChhhhcCCCCCCeEeCcCCcceecCC
Q 048635          512 IPAQLASLNFLSVLNLSYNNLVGQIP  537 (562)
Q Consensus       512 ~p~~l~~l~~L~~L~l~~n~l~~~~p  537 (562)
                      .+..+..+++|++|++++|++.+..+
T Consensus       151 ~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          151 PHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             CHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            66778888999999999998876544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.74  E-value=2.2e-17  Score=151.13  Aligned_cols=134  Identities=20%  Similarity=0.255  Sum_probs=78.3

Q ss_pred             cCEEECcCCcccccCC-ccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEE
Q 048635          353 LHILDLSGNQLQGVVP-KSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVD  431 (562)
Q Consensus       353 L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~  431 (562)
                      ++.|++++|.+++..+ ..+..+++|++|++++|++++..+..|..+++|++|++++|.+.+..  +..+..+++|++|+
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~  111 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQ--HKMFKGLESLKTLM  111 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCC--GGGGTTCSSCCEEE
T ss_pred             CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccC--HhHhcCCcCCCEEE
Confidence            3455555555554322 23445555555555555555544445555555555555555555433  33445555555555


Q ss_pred             cCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCccccc
Q 048635          432 FASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGK  511 (562)
Q Consensus       432 l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~  511 (562)
                      +++|++.                       +..+..+..+++|+.|+|++|.+++..|..|..+++|++|++++|.+...
T Consensus       112 Ls~N~l~-----------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          112 LRSNRIT-----------------------CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             CTTSCCC-----------------------CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             CCCCcCC-----------------------eECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            5555552                       23345566677777777777777766677777777778888887777653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=3.3e-17  Score=162.22  Aligned_cols=139  Identities=22%  Similarity=0.237  Sum_probs=70.7

Q ss_pred             CCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCC
Q 048635          349 RNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQ  428 (562)
Q Consensus       349 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~  428 (562)
                      .+++|+.|++++|.+++..+..|..+++|++|+|++|++....+..|..+++|++|+|++|.+....  +..+..+++|+
T Consensus        62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~l~~L~  139 (361)
T 2xot_A           62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVD--RNAFEDMAQLQ  139 (361)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCC
T ss_pred             cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEEC--HHHhCCcccCC
Confidence            4445555555555555444445555555555555555555544444555555555555555555443  44555555555


Q ss_pred             EEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCC--CCeeeCCCC
Q 048635          429 IVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQ--IESLDLSMN  506 (562)
Q Consensus       429 ~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~--L~~L~Ls~n  506 (562)
                      +|++++|++++ +|..                   ....+..+++|+.|+|++|.+++..+..+..++.  ++.|+|++|
T Consensus       140 ~L~L~~N~l~~-l~~~-------------------~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          140 KLYLSQNQISR-FPVE-------------------LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN  199 (361)
T ss_dssp             EEECCSSCCCS-CCGG-------------------GTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred             EEECCCCcCCe-eCHH-------------------HhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence            55555555521 1100                   0001134566666666666666444455555555  366666666


Q ss_pred             ccc
Q 048635          507 NLS  509 (562)
Q Consensus       507 ~l~  509 (562)
                      .+.
T Consensus       200 ~~~  202 (361)
T 2xot_A          200 PLE  202 (361)
T ss_dssp             CEE
T ss_pred             Ccc
Confidence            654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=3.7e-17  Score=171.62  Aligned_cols=198  Identities=20%  Similarity=0.244  Sum_probs=156.6

Q ss_pred             CCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCC
Q 048635          245 YLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSS  324 (562)
Q Consensus       245 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~  324 (562)
                      .+..+.+..+.+....  .+..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+.+..+ +..+++|+.|+|++
T Consensus        22 ~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS
T ss_pred             HHHHHhccCCCccccc--chhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC
Confidence            3445566666665443  24678889999999999874 33 58889999999999999987655 88899999999999


Q ss_pred             CCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEE
Q 048635          325 NNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVL  404 (562)
Q Consensus       325 n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  404 (562)
                      |.+.            .++  .+..+++|+.|++++|.+.+.  ..+..+++|+.|+|++|++.+.  ..+..+++|+.|
T Consensus        97 N~l~------------~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L  158 (605)
T 1m9s_A           97 NKIK------------DLS--SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTL  158 (605)
T ss_dssp             SCCC------------CCT--TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEE
T ss_pred             CCCC------------CCh--hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEE
Confidence            9886            344  278888999999999999853  4588899999999999999885  568889999999


Q ss_pred             EccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcC
Q 048635          405 VLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNAL  484 (562)
Q Consensus       405 ~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i  484 (562)
                      +|++|.+.+..  +  +..+++|+.|+|++|++.+                        + +.+..+++|+.|+|++|.+
T Consensus       159 ~Ls~N~l~~~~--~--l~~l~~L~~L~Ls~N~i~~------------------------l-~~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          159 SLEDNQISDIV--P--LAGLTKLQNLYLSKNHISD------------------------L-RALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             ECCSSCCCCCG--G--GTTCTTCCEEECCSSCCCB------------------------C-GGGTTCTTCSEEECCSEEE
T ss_pred             ECcCCcCCCch--h--hccCCCCCEEECcCCCCCC------------------------C-hHHccCCCCCEEEccCCcC
Confidence            99999998654  3  7889999999999999842                        2 3477889999999999999


Q ss_pred             ccCcChhccC
Q 048635          485 TGSIPSSFGN  494 (562)
Q Consensus       485 ~~~~p~~l~~  494 (562)
                      .+.....+..
T Consensus       210 ~~~p~~~~~~  219 (605)
T 1m9s_A          210 LNKPINHQSN  219 (605)
T ss_dssp             ECCCCCCCSS
T ss_pred             cCCccccccc
Confidence            8544333333

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.72  E-value=1.2e-17  Score=157.32  Aligned_cols=63  Identities=25%  Similarity=0.359  Sum_probs=32.7

Q ss_pred             ccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCccee
Q 048635          468 MGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVG  534 (562)
Q Consensus       468 l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~  534 (562)
                      +..+++|+.|++++|.+++. + .+..+++|+.|++++|++++.  ..+..+++|++|++++|++.+
T Consensus       124 l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          124 LIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             GTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred             hcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence            44455555555555555532 2 345555555555555555533  344555555555555555543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=2.5e-17  Score=155.23  Aligned_cols=145  Identities=21%  Similarity=0.263  Sum_probs=83.3

Q ss_pred             CCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccc
Q 048635          267 LKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDII  346 (562)
Q Consensus       267 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~  346 (562)
                      +..+..++++++.+++..  .+..+++|+.|++++|.+... +.+..+++|++|++++|.++            .++.  
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~L~~N~i~------------~~~~--   80 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQIS------------DLSP--   80 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCC------------CCGG--
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-hHHhhCCCCCEEECCCCccC------------CChh--
Confidence            445566666666666322  455667777777777766643 35566666666666666655            3332  


Q ss_pred             cCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCC
Q 048635          347 FPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPL  426 (562)
Q Consensus       347 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~  426 (562)
                      +..+++|+.|++++|++++. +. +.. ++|++|++++|++++. + .+..+++|++|++++|++++.    ..+..+++
T Consensus        81 l~~l~~L~~L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~----~~l~~l~~  151 (263)
T 1xeu_A           81 LKDLTKLEELSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI----VMLGFLSK  151 (263)
T ss_dssp             GTTCSSCCEEECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC----GGGGGCTT
T ss_pred             hccCCCCCEEECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC----hHHccCCC
Confidence            55566666666666666642 22 222 5666666666666653 2 355566666666666665542    13445555


Q ss_pred             CCEEEcCCCcC
Q 048635          427 LQIVDFASNKF  437 (562)
Q Consensus       427 L~~L~l~~n~~  437 (562)
                      |++|++++|++
T Consensus       152 L~~L~L~~N~i  162 (263)
T 1xeu_A          152 LEVLDLHGNEI  162 (263)
T ss_dssp             CCEEECTTSCC
T ss_pred             CCEEECCCCcC
Confidence            55555555555

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.67  E-value=1.5e-16  Score=143.01  Aligned_cols=105  Identities=17%  Similarity=0.193  Sum_probs=52.2

Q ss_pred             CCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEE
Q 048635          195 LLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVD  274 (562)
Q Consensus       195 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  274 (562)
                      +++|++|++++|.++ .++ .+..+++|++|++++|.+  ..++.+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHA--TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCC--SCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCC--CcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            344555555555555 333 355555555555555533  2223444455555555555555444444455555555555


Q ss_pred             ccCCcccccCCccCCCCCCCCeeeCcCCc
Q 048635          275 LRSCSFTGPIPTSTTNLTQLFHVDFSSNH  303 (562)
Q Consensus       275 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  303 (562)
                      +++|.+++..+..+..+++|++|++++|.
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~  147 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNG  147 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence            55555554444444444455555554444

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.66  E-value=5.3e-17  Score=158.68  Aligned_cols=221  Identities=11%  Similarity=0.049  Sum_probs=131.6

Q ss_pred             CCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCc----CCCCCCCCCcCCCCC
Q 048635          195 LLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTS----FSGILPDPIGILKYL  270 (562)
Q Consensus       195 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~----l~~~~~~~~~~~~~L  270 (562)
                      +++|+++++.. .++.....+|..+++|+.+++++|.+......+|..+.++..+......    .......++..+..|
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            55566666655 5554555556666666666666665544444455554444444443311    111122234444444


Q ss_pred             c-EEEccCCccc-ccCCccCCCCCCCCeeeCcCCcccccCCCC-CCCCCCCEEEcCCCCCcceEECCCCcCcccCCcccc
Q 048635          271 T-RVDLRSCSFT-GPIPTSTTNLTQLFHVDFSSNHFSGPIPSF-HESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIF  347 (562)
Q Consensus       271 ~-~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~-~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~  347 (562)
                      + .+.+...... ......-....++..+.+.++-.......+ ..+++|+.+++.+|.++            .++..+|
T Consensus       179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~------------~I~~~aF  246 (329)
T 3sb4_A          179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT------------TIPDFTF  246 (329)
T ss_dssp             EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC------------EECTTTT
T ss_pred             ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc------------eecHhhh
Confidence            4 3333221110 000001112334444544433211111111 23678888888887776            7788778


Q ss_pred             CCCCCcCEEECcCCcccccCCccCCCCCCCC-EEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCC
Q 048635          348 PRNCGLHILDLSGNQLQGVVPKSLANCNMLQ-VLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPL  426 (562)
Q Consensus       348 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~  426 (562)
                      .++.+|+.+++.+| ++.....+|.++++|+ .+++.+ .++.+.+..|.+|++|+.+++.+|.+....  ..++..+++
T Consensus       247 ~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~--~~aF~~~~~  322 (329)
T 3sb4_A          247 AQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLG--DELFGNGVP  322 (329)
T ss_dssp             TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEEC--TTTTCTTCC
T ss_pred             hCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccc--hhhhcCCcc
Confidence            88888899988887 7767778888888898 888888 777766778888889999998888888776  778888888


Q ss_pred             CCEEEc
Q 048635          427 LQIVDF  432 (562)
Q Consensus       427 L~~L~l  432 (562)
                      |+.+..
T Consensus       323 L~~ly~  328 (329)
T 3sb4_A          323 SKLIYK  328 (329)
T ss_dssp             CCEEEC
T ss_pred             hhhhcc
Confidence            888763

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.66  E-value=4.2e-16  Score=136.35  Aligned_cols=137  Identities=18%  Similarity=0.151  Sum_probs=100.9

Q ss_pred             CCCCCEEEcccCCCC-CcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhh
Q 048635          374 CNMLQVLDFRNNHIS-DNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMR  452 (562)
Q Consensus       374 l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~  452 (562)
                      .++|++|++++|.+. +.+|..+..+++|++|++++|.+.+.    ..+..+++|++|++++|++.+             
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~N~l~~-------------   85 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV----SNLPKLPKLKKLELSENRIFG-------------   85 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC----SSCCCCSSCCEEEEESCCCCS-------------
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh----hhhccCCCCCEEECcCCcCch-------------
Confidence            356667777777666 34555566677777777777776642    456667777777777777743             


Q ss_pred             hhhhhCCCcccccccccCcCCCCEEeCcCCcCccCc-ChhccCCCCCCeeeCCCCcccccCh---hhhcCCCCCCeEeCc
Q 048635          453 YQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSI-PSSFGNLKQIESLDLSMNNLSGKIP---AQLASLNFLSVLNLS  528 (562)
Q Consensus       453 ~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p---~~l~~l~~L~~L~l~  528 (562)
                                .+|..+..+++|+.|++++|.+++.. +..+..+++|+.|++++|++++..+   ..+..+++|++|+++
T Consensus        86 ----------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  155 (168)
T 2ell_A           86 ----------GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGY  155 (168)
T ss_dssp             ----------CCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTE
T ss_pred             ----------HHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCC
Confidence                      24455566889999999999998542 2688899999999999999996555   478899999999999


Q ss_pred             CCcceecCCC
Q 048635          529 YNNLVGQIPT  538 (562)
Q Consensus       529 ~n~l~~~~p~  538 (562)
                      +|++. .+|.
T Consensus       156 ~n~~~-~~~~  164 (168)
T 2ell_A          156 DREDQ-EAPD  164 (168)
T ss_dssp             ETTSC-BCCS
T ss_pred             CCChh-hccc
Confidence            99887 4553

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.65  E-value=5.1e-16  Score=138.85  Aligned_cols=130  Identities=21%  Similarity=0.312  Sum_probs=65.6

Q ss_pred             CEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchH-HhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEc
Q 048635          354 HILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPC-WLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDF  432 (562)
Q Consensus       354 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l  432 (562)
                      +.++++++.++ .+|..+.  .++++|++++|++.+..+. .+..+++|++|++++|.+.+..  +..+..+++|++|++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L   85 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE--PNAFEGASHIQELQL   85 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC--TTTTTTCTTCCEEEC
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC--HhHcCCcccCCEEEC
Confidence            34444444443 2333221  1455555555555443332 2445555555555555554433  444445555555555


Q ss_pred             CCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCccccc
Q 048635          433 ASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGK  511 (562)
Q Consensus       433 ~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~  511 (562)
                      ++|+++                       +..+..+..+++|++|++++|.+++..|..|..+++|++|++++|.+++.
T Consensus        86 s~N~l~-----------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           86 GENKIK-----------------------EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CSCCCC-----------------------EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CCCcCC-----------------------ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            555542                       22233345556666666666666655555666666666666666666543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.65  E-value=4.9e-19  Score=184.77  Aligned_cols=37  Identities=14%  Similarity=0.100  Sum_probs=23.8

Q ss_pred             cCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCC
Q 048635          265 GILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSN  302 (562)
Q Consensus       265 ~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  302 (562)
                      ...++|+.|++++|.++ .+|..++.+++|+.|++++|
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n  382 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENK  382 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccc
Confidence            34566666777776665 55666666667777766554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.64  E-value=7.3e-16  Score=137.82  Aligned_cols=132  Identities=19%  Similarity=0.238  Sum_probs=115.7

Q ss_pred             CEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCC-CCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhh
Q 048635          378 QVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPR-NNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQAT  456 (562)
Q Consensus       378 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~  456 (562)
                      +.++++++.++. +|..+.  ++|++|++++|.+.+..  +. .+..+++|++|++++|+++                  
T Consensus        11 ~~l~~s~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~--~~~~~~~l~~L~~L~Ls~N~l~------------------   67 (192)
T 1w8a_A           11 TTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRIS--SDGLFGRLPHLVKLELKRNQLT------------------   67 (192)
T ss_dssp             TEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBC--CSCSGGGCTTCCEEECCSSCCC------------------
T ss_pred             CEEEcCCCCcCc-CccCCC--CCCCEEECCCCcCCccC--CccccccCCCCCEEECCCCCCC------------------
Confidence            789999999977 554433  48999999999998654  33 4789999999999999984                  


Q ss_pred             hCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceecC
Q 048635          457 NKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQI  536 (562)
Q Consensus       457 ~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~  536 (562)
                           +..|..+..+++|++|++++|.+++..+..|..+++|++|+|++|++++..|..+..+++|++|++++|++.+..
T Consensus        68 -----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           68 -----GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             -----CBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             -----CcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence                 455677889999999999999999888888999999999999999999999999999999999999999998765


Q ss_pred             C
Q 048635          537 P  537 (562)
Q Consensus       537 p  537 (562)
                      +
T Consensus       143 ~  143 (192)
T 1w8a_A          143 H  143 (192)
T ss_dssp             G
T ss_pred             c
Confidence            5

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=4.8e-16  Score=151.86  Aligned_cols=268  Identities=10%  Similarity=0.057  Sum_probs=151.3

Q ss_pred             CCCCCEEEccCCcCc--ccCChhhhCCCCccEEeccCCCCCCCCCCCCCC--------CCCCCEEEccCCcCCCCCCCCC
Q 048635          195 LLNLTNLDLSQCDLR--GKYPEKILQVSTLETLDLSYNPLLQGSLPNFPK--------NSYLQNLNLANTSFSGILPDPI  264 (562)
Q Consensus       195 l~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~--------~~~L~~L~L~~n~l~~~~~~~~  264 (562)
                      +++|++|+|++|.+.  ......   ++.++.+.+..+.   .....|..        +++|+.+++.. .++.+...+|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF  120 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF  120 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred             hccCeEEecCcceeEEecCcccc---ccccccccccccc---cCHHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence            566777777777665  221111   1222333333332   22334444        55666666655 5554445555


Q ss_pred             cCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCc
Q 048635          265 GILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSD  344 (562)
Q Consensus       265 ~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~  344 (562)
                      .++++|+.+++.+|.+....+..|..+.++..+....+......                               ..+..
T Consensus       121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~-------------------------------~~i~~  169 (329)
T 3sb4_A          121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFK-------------------------------NRWEH  169 (329)
T ss_dssp             TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTS-------------------------------TTTTT
T ss_pred             hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcc-------------------------------ccccc
Confidence            66666666666665555444445554444444433332110000                               01112


Q ss_pred             cccCCCCCcC-EEECcCCc-ccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCC
Q 048635          345 IIFPRNCGLH-ILDLSGNQ-LQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNV  422 (562)
Q Consensus       345 ~~~~~~~~L~-~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~  422 (562)
                      ..|.++..|+ .+.+.... +.......-....+++.+.+.++-...........+++|+++++.+|.++.+.  ..++.
T Consensus       170 ~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~--~~aF~  247 (329)
T 3sb4_A          170 FAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIP--DFTFA  247 (329)
T ss_dssp             SCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEEC--TTTTT
T ss_pred             cccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceec--Hhhhh
Confidence            2233333444 33333221 11111111123455667777665222211222234788888888888887766  67788


Q ss_pred             CCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCC-EEeCcCCcCccCcChhccCCCCCCee
Q 048635          423 SWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLY-ALNMSHNALTGSIPSSFGNLKQIESL  501 (562)
Q Consensus       423 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~-~L~Ls~n~i~~~~p~~l~~l~~L~~L  501 (562)
                      .+++|+++++.+| +                       ......+|.++++|+ .+++.+ .++...+.+|.+|++|+.+
T Consensus       248 ~~~~L~~l~l~~n-i-----------------------~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          248 QKKYLLKIKLPHN-L-----------------------KTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             TCTTCCEEECCTT-C-----------------------CEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             CCCCCCEEECCcc-c-----------------------ceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            8888888888876 4                       233345678888898 899888 7775667889999999999


Q ss_pred             eCCCCcccccChhhhcCCCCCCeEeC
Q 048635          502 DLSMNNLSGKIPAQLASLNFLSVLNL  527 (562)
Q Consensus       502 ~Ls~n~l~~~~p~~l~~l~~L~~L~l  527 (562)
                      ++++|+++...+.+|.++++|++++.
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EeCCCccCccchhhhcCCcchhhhcc
Confidence            99999998777778899999988864

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.63  E-value=3.8e-18  Score=178.04  Aligned_cols=197  Identities=19%  Similarity=0.191  Sum_probs=123.4

Q ss_pred             CCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCC
Q 048635          289 TNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVP  368 (562)
Q Consensus       289 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  368 (562)
                      ...+.|+.|++++|.+...+..++.+++|+.|++++|....           .++..            +..+...+..|
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~-----------~l~~l------------l~~~~~~~~~~  402 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLL-----------TIILL------------MRALDPLLYEK  402 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH-----------HHHHH------------HHHHCTGGGHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhh-----------hHHHH------------HHhcccccCCH
Confidence            45666777777777766554455566666666664442100           00000            00001223344


Q ss_pred             ccCCCCCCCCEEE-cccCCCCCcch--------HHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCC
Q 048635          369 KSLANCNMLQVLD-FRNNHISDNFP--------CWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGG  439 (562)
Q Consensus       369 ~~l~~l~~L~~L~-L~~n~l~~~~~--------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~  439 (562)
                      ..+..+++|+.|+ ++.|.+.....        ..+. ...|+.|++++|.+++.   |. +..+++|+.|++++|.++ 
T Consensus       403 ~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~-~~~L~~L~Ls~n~l~~l---p~-~~~l~~L~~L~Ls~N~l~-  476 (567)
T 1dce_A          403 ETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKME-YADVRVLHLAHKDLTVL---CH-LEQLLLVTHLDLSHNRLR-  476 (567)
T ss_dssp             HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHH-HTTCSEEECTTSCCSSC---CC-GGGGTTCCEEECCSSCCC-
T ss_pred             HHHHHHHhcccCcchhhcccchhhhhhhhcccccccC-ccCceEEEecCCCCCCC---cC-ccccccCcEeecCccccc-
Confidence            4445555555555 34333222100        0011 13578888888887753   44 777888888888888872 


Q ss_pred             cCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccC-hhhhcC
Q 048635          440 RLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKI-PAQLAS  518 (562)
Q Consensus       440 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~  518 (562)
                                             .+|..++.+++|+.|+|++|.+++ +| .|+.+++|++|+|++|++++.. |..+..
T Consensus       477 -----------------------~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~  531 (567)
T 1dce_A          477 -----------------------ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVS  531 (567)
T ss_dssp             -----------------------CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGG
T ss_pred             -----------------------ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhc
Confidence                                   456677888888888888888885 56 7888888888888888888765 888888


Q ss_pred             CCCCCeEeCcCCcceecCCCC
Q 048635          519 LNFLSVLNLSYNNLVGQIPTA  539 (562)
Q Consensus       519 l~~L~~L~l~~n~l~~~~p~~  539 (562)
                      +++|++|++++|++++.+|..
T Consensus       532 l~~L~~L~L~~N~l~~~~~~~  552 (567)
T 1dce_A          532 CPRLVLLNLQGNSLCQEEGIQ  552 (567)
T ss_dssp             CTTCCEEECTTSGGGGSSSCT
T ss_pred             CCCCCEEEecCCcCCCCccHH
Confidence            888888888888888666543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.62  E-value=1.1e-15  Score=130.66  Aligned_cols=128  Identities=16%  Similarity=0.148  Sum_probs=86.5

Q ss_pred             CCCCEEEcccCCCC-CcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhh
Q 048635          375 NMLQVLDFRNNHIS-DNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRY  453 (562)
Q Consensus       375 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~  453 (562)
                      ++|++|++++|.+. +.+|..+..+++|++|++++|.+.+.    ..+..+++|++|++++|.+++              
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~n~i~~--------------   78 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI----ANLPKLNKLKKLELSDNRVSG--------------   78 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC----TTCCCCTTCCEEECCSSCCCS--------------
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc----hhhhcCCCCCEEECCCCcccc--------------
Confidence            44555555555554 33444445555566666666655532    445556666666666666632              


Q ss_pred             hhhhCCCcccccccccCcCCCCEEeCcCCcCccC-cChhccCCCCCCeeeCCCCcccccCh---hhhcCCCCCCeEeCcC
Q 048635          454 QATNKRCRDQATEEMGRFKSLYALNMSHNALTGS-IPSSFGNLKQIESLDLSMNNLSGKIP---AQLASLNFLSVLNLSY  529 (562)
Q Consensus       454 ~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p---~~l~~l~~L~~L~l~~  529 (562)
                               .+|..+..+++|++|++++|.+++. .+..+..+++|++|++++|++++..+   ..+..+++|++|++++
T Consensus        79 ---------~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           79 ---------GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ---------CTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             ---------hHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence                     2344456678899999999998853 34778899999999999999986655   5788899999998864

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.62  E-value=4.7e-14  Score=141.32  Aligned_cols=312  Identities=13%  Similarity=0.085  Sum_probs=211.6

Q ss_pred             cccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCC
Q 048635           71 FGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGT  150 (562)
Q Consensus        71 ~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~  150 (562)
                      .+|.++++|+.+++..+ ++..-..+|.+|++|+.+++.++-         ......+|.++++|+.+.+..+ +..++.
T Consensus        65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~l---------~~I~~~aF~~c~~L~~i~~p~~-l~~i~~  133 (394)
T 4fs7_A           65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDSV---------KMIGRCTFSGCYALKSILLPLM-LKSIGV  133 (394)
T ss_dssp             TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTTC---------CEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred             HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCCc---------eEccchhhcccccchhhcccCc-eeeecc
Confidence            46888999999999754 665667778999999999987652         2333456788888887766543 444443


Q ss_pred             ccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCC
Q 048635          151 ERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYN  230 (562)
Q Consensus       151 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~  230 (562)
                         .++..+..++..........+              ...+.++++|+.+.+..+. .......|..+.+|+.+.+..+
T Consensus       134 ---~aF~~~~~~~~~~~~~~~~i~--------------~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~  195 (394)
T 4fs7_A          134 ---EAFKGCDFKEITIPEGVTVIG--------------DEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN  195 (394)
T ss_dssp             ---TTTTTCCCSEEECCTTCCEEC--------------TTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT
T ss_pred             ---eeeecccccccccCccccccc--------------hhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC
Confidence               344444433322222211111              2236677888888887653 3355667778888888888766


Q ss_pred             CCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCC
Q 048635          231 PLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPS  310 (562)
Q Consensus       231 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~  310 (562)
                       +.......|..+..|+.+.+..+...  +.........|+.+.+... ++......+..+..++.+.+..+...-....
T Consensus       196 -~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~  271 (394)
T 4fs7_A          196 -LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSL  271 (394)
T ss_dssp             -CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCT
T ss_pred             -ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcceeeccc
Confidence             45555567777788888877665432  2233344567888887643 3334455677788888888877655434455


Q ss_pred             CCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCc
Q 048635          311 FHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDN  390 (562)
Q Consensus       311 ~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  390 (562)
                      +..+..++.+.....               .++...|..+.+|+.+.+.++ ++.....+|.++.+|+.+++..+ ++.+
T Consensus       272 F~~~~~l~~~~~~~~---------------~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I  334 (394)
T 4fs7_A          272 FYNCSGLKKVIYGSV---------------IVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEI  334 (394)
T ss_dssp             TTTCTTCCEEEECSS---------------EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEE
T ss_pred             cccccccceeccCce---------------eeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEE
Confidence            677777887776543               345556888889999998765 55566778899999999999754 6665


Q ss_pred             chHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCC
Q 048635          391 FPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASN  435 (562)
Q Consensus       391 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n  435 (562)
                      ...+|.+|.+|+.+.+..+ ++...  ..++..+++|+.+++..+
T Consensus       335 ~~~aF~~c~~L~~i~lp~~-l~~I~--~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          335 GKRSFRGCTSLSNINFPLS-LRKIG--ANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             CTTTTTTCTTCCEECCCTT-CCEEC--TTTBTTCTTCCEEEEEGG
T ss_pred             hHHhccCCCCCCEEEECcc-ccEeh--HHHhhCCCCCCEEEECCC
Confidence            6678889999999999766 66555  678888999999988653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.62  E-value=5.1e-14  Score=140.43  Aligned_cols=269  Identities=14%  Similarity=0.170  Sum_probs=126.8

Q ss_pred             CCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEE
Q 048635          195 LLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVD  274 (562)
Q Consensus       195 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  274 (562)
                      +..++.+.+... ++.....+|.++ +|+.+.+..+ +......+|.. .+|+.+.+.. .++.....+|.++++|+.++
T Consensus       112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            355666666542 443445555553 5677766655 44444445554 3466666654 44444445566666666666


Q ss_pred             ccCCcccccCCccCCCCCCCCeeeCcCCccccc-CCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCc
Q 048635          275 LRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGP-IPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGL  353 (562)
Q Consensus       275 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L  353 (562)
                      +.+|.++......|. +.+|+.+.+..+ +... ...|..+++|+.+++..+ ++            .++..+|.+ ++|
T Consensus       187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~------------~I~~~aF~~-~~L  250 (401)
T 4fdw_A          187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS------------TIGQEAFRE-SGI  250 (401)
T ss_dssp             CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC------------EECTTTTTT-CCC
T ss_pred             cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc------------Ccccccccc-CCc
Confidence            666555533333333 355555555533 2221 223344555555555432 11            333333444 345


Q ss_pred             CEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcC
Q 048635          354 HILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFA  433 (562)
Q Consensus       354 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~  433 (562)
                      +.+.+. +.++.....+|.+|++|+.+++.++.+..                   +......  ..++..+++|+.+++.
T Consensus       251 ~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~-------------------~~~~~I~--~~aF~~c~~L~~l~l~  308 (401)
T 4fdw_A          251 TTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFND-------------------DPEAMIH--PYCLEGCPKLARFEIP  308 (401)
T ss_dssp             SEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCC-------------------CTTCEEC--TTTTTTCTTCCEECCC
T ss_pred             cEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccC-------------------CcccEEC--HHHhhCCccCCeEEeC
Confidence            555442 22333334444445555555544443320                   0000111  3344444444444444


Q ss_pred             CCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccCh
Q 048635          434 SNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP  513 (562)
Q Consensus       434 ~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p  513 (562)
                      . .+                       ......+|.++++|+.+.|..+ ++...+.+|.++ +|+.+++++|.+....+
T Consensus       309 ~-~i-----------------------~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~  362 (401)
T 4fdw_A          309 E-SI-----------------------RILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFE  362 (401)
T ss_dssp             T-TC-----------------------CEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCC
T ss_pred             C-ce-----------------------EEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccc
Confidence            2 12                       1112233455555566655433 443444556666 66666666665554444


Q ss_pred             hhhcCCC-CCCeEeCcCCcc
Q 048635          514 AQLASLN-FLSVLNLSYNNL  532 (562)
Q Consensus       514 ~~l~~l~-~L~~L~l~~n~l  532 (562)
                      ..|..++ .+++|++..+.+
T Consensus       363 ~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          363 KVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             SSCCCSCTTCCEEEECGGGH
T ss_pred             ccccCCCCCccEEEeCHHHH
Confidence            4555553 555666555443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=1.2e-15  Score=133.39  Aligned_cols=132  Identities=20%  Similarity=0.184  Sum_probs=71.5

Q ss_pred             CcCEEECcCCccc-ccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEE
Q 048635          352 GLHILDLSGNQLQ-GVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIV  430 (562)
Q Consensus       352 ~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L  430 (562)
                      +|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+..  +..+..+++|++|
T Consensus        25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L  100 (168)
T 2ell_A           25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGL--DMLAEKLPNLTHL  100 (168)
T ss_dssp             SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCC--CHHHHHCTTCCEE
T ss_pred             cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHH--HHHHhhCCCCCEE
Confidence            3444555554444 33444444445555555555554443  33444455555555555544321  3333334555555


Q ss_pred             EcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcC---hhccCCCCCCeeeCCCCc
Q 048635          431 DFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIP---SSFGNLKQIESLDLSMNN  507 (562)
Q Consensus       431 ~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p---~~l~~l~~L~~L~Ls~n~  507 (562)
                      ++++|.+++.                      ..+..+..+++|+.|++++|.+++..+   ..+..+++|+.|++++|.
T Consensus       101 ~Ls~N~l~~~----------------------~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A          101 NLSGNKLKDI----------------------STLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             ECBSSSCCSS----------------------GGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             eccCCccCcc----------------------hhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence            5555554211                      012446667778888888888775444   367778888888888887


Q ss_pred             cc
Q 048635          508 LS  509 (562)
Q Consensus       508 l~  509 (562)
                      +.
T Consensus       159 ~~  160 (168)
T 2ell_A          159 DQ  160 (168)
T ss_dssp             SC
T ss_pred             hh
Confidence            76

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.60  E-value=3e-16  Score=168.90  Aligned_cols=185  Identities=20%  Similarity=0.163  Sum_probs=65.8

Q ss_pred             CCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccC
Q 048635          292 TQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSL  371 (562)
Q Consensus       292 ~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l  371 (562)
                      +.++.|++.+|.+. .    .....++.++|+.+.+.. +++..|.+.  ++...+..+..|+.|+|++|.+. .+|..+
T Consensus       173 ~~~~~l~L~~n~~~-~----~~~~~l~~l~Ls~~~i~~-~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~  243 (727)
T 4b8c_D          173 PLTPKIELFANGKD-E----ANQALLQHKKLSQYSIDE-DDDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-NISANI  243 (727)
T ss_dssp             ---------------------------------------------------------CCCCCCEEECTTSCCS-CCCGGG
T ss_pred             CccceEEeeCCCCC-c----chhhHhhcCccCcccccC-cccccccee--cChhhhccCCCCcEEECCCCCCC-CCChhh
Confidence            34555555554432 1    122345555665555431 122222221  22222445555555555555554 333334


Q ss_pred             CCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhh
Q 048635          372 ANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGM  451 (562)
Q Consensus       372 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l  451 (562)
                      ..+++|++|+|++|.++ .+|..|..+++|++|+|++|.++   .+|..+..+++|++|+|++|.+              
T Consensus       244 ~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~---~lp~~~~~l~~L~~L~L~~N~l--------------  305 (727)
T 4b8c_D          244 FKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT---SLPAELGSCFQLKYFYFFDNMV--------------  305 (727)
T ss_dssp             GGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS---SCCSSGGGGTTCSEEECCSSCC--------------
T ss_pred             cCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC---ccChhhcCCCCCCEEECCCCCC--------------
Confidence            45555555555555555 24444555555555555555554   2244445555555555555544              


Q ss_pred             hhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCC-CCeeeCCCCcccccCh
Q 048635          452 RYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQ-IESLDLSMNNLSGKIP  513 (562)
Q Consensus       452 ~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~-L~~L~Ls~n~l~~~~p  513 (562)
                                +.+|..|..+++|+.|+|++|.+++.+|..+..+.. +..++|++|.+++.+|
T Consensus       306 ----------~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p  358 (727)
T 4b8c_D          306 ----------TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP  358 (727)
T ss_dssp             ----------CCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred             ----------CccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence                      133344455555555555555555444444433211 1224455555554444

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.59  E-value=2.2e-13  Score=136.48  Aligned_cols=334  Identities=12%  Similarity=0.052  Sum_probs=167.7

Q ss_pred             CcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecc
Q 048635           89 FTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLS  168 (562)
Q Consensus        89 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~  168 (562)
                      ++.+-..+|.+|.+|+.+.+..+ +        ......+|.++++|+.+++..+ ++.++.   .++..+++|+.+.+.
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i--------~~I~~~aF~~c~~L~~i~lp~~-l~~I~~---~aF~~c~~L~~i~~p  125 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-V--------REIGEFAFENCSKLEIINIPDS-VKMIGR---CTFSGCYALKSILLP  125 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-C--------CEECTTTTTTCTTCCEECCCTT-CCEECT---TTTTTCTTCCCCCCC
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-c--------cCcchhHhhCCCCCcEEEeCCC-ceEccc---hhhcccccchhhccc
Confidence            45455667888888888888654 2        2333456778888888887654 555544   455666666655544


Q ss_pred             cCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCE
Q 048635          169 SCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQN  248 (562)
Q Consensus       169 ~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~  248 (562)
                      .+ +..                                    ....+|..+..++......  .......+|..+.+|+.
T Consensus       126 ~~-l~~------------------------------------i~~~aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~  166 (394)
T 4fs7_A          126 LM-LKS------------------------------------IGVEAFKGCDFKEITIPEG--VTVIGDEAFATCESLEY  166 (394)
T ss_dssp             TT-CCE------------------------------------ECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCE
T ss_pred             Cc-eee------------------------------------ecceeeecccccccccCcc--ccccchhhhcccCCCcE
Confidence            32 111                                    1111222221111111111  11122223444444444


Q ss_pred             EEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCc
Q 048635          249 LNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLN  328 (562)
Q Consensus       249 L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~  328 (562)
                      +.+..+. ......+|.++++|+.+.+..+ ++......+.++..|+.+.+..+... ....+....+|+.+.+.... +
T Consensus       167 i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~~~-~  242 (394)
T 4fs7_A          167 VSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGVKNIIIPDSF-T  242 (394)
T ss_dssp             EECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCCEEEECTTC-C
T ss_pred             EecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCCceEEECCCc-e
Confidence            4443322 1122334455555555555443 22233344555556665555544322 11222334456655554321 1


Q ss_pred             ceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccC
Q 048635          329 GVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRS  408 (562)
Q Consensus       329 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  408 (562)
                                  .+...+|..+..++.+.+..+... ....++..+..++.+......+.   ...|..+.+|+.+.+.+
T Consensus       243 ------------~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~  306 (394)
T 4fs7_A          243 ------------ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLD  306 (394)
T ss_dssp             ------------EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECT
T ss_pred             ------------ecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---ccccccccccccccccc
Confidence                        333444666666777666655333 44556666677776666554332   23455666777777654


Q ss_pred             cccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCc
Q 048635          409 NNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSI  488 (562)
Q Consensus       409 n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~  488 (562)
                      + +..+.  ..++..+.+|+.+++..+ +                       ......+|.++++|+.+.+..+ ++...
T Consensus       307 ~-i~~I~--~~aF~~c~~L~~i~lp~~-v-----------------------~~I~~~aF~~c~~L~~i~lp~~-l~~I~  358 (394)
T 4fs7_A          307 S-VKFIG--EEAFESCTSLVSIDLPYL-V-----------------------EEIGKRSFRGCTSLSNINFPLS-LRKIG  358 (394)
T ss_dssp             T-CCEEC--TTTTTTCTTCCEECCCTT-C-----------------------CEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred             c-cceec--hhhhcCCCCCCEEEeCCc-c-----------------------cEEhHHhccCCCCCCEEEECcc-ccEeh
Confidence            3 33333  445556666666666432 2                       1122344566666666666555 44344


Q ss_pred             ChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCe
Q 048635          489 PSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSV  524 (562)
Q Consensus       489 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  524 (562)
                      ..+|.+|++|+.+++..+ ++ .+...|.++++|+.
T Consensus       359 ~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~  392 (394)
T 4fs7_A          359 ANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKW  392 (394)
T ss_dssp             TTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEE
T ss_pred             HHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcE
Confidence            456666777777766543 22 23345555665554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.58  E-value=1.8e-14  Score=128.63  Aligned_cols=128  Identities=20%  Similarity=0.242  Sum_probs=92.6

Q ss_pred             CEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcC
Q 048635          354 HILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFA  433 (562)
Q Consensus       354 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~  433 (562)
                      +.++++++.++ .+|..+  .++|++|++++|.++. +|..|..+++|++|++++|.+.+..  +..+..+++|++|+++
T Consensus        13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~i~--~~~f~~l~~L~~L~Ls   86 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLS--NQSFSNMTQLLTLILS   86 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCEeC--HhHccCCCCCCEEECC
Confidence            56777777777 345443  3578888888888875 5567788888888888888887654  5566777777777777


Q ss_pred             CCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccc
Q 048635          434 SNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG  510 (562)
Q Consensus       434 ~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~  510 (562)
                      +|+++                       +..+..+..+++|+.|+|++|.++...+..|..+++|+.|++++|.+..
T Consensus        87 ~N~l~-----------------------~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           87 YNRLR-----------------------CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             SSCCC-----------------------BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCccC-----------------------EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            77763                       3334456777888888888888885555567778888888888887763

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.58  E-value=1.2e-14  Score=128.18  Aligned_cols=130  Identities=16%  Similarity=0.162  Sum_probs=76.2

Q ss_pred             cCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEc
Q 048635          353 LHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDF  432 (562)
Q Consensus       353 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l  432 (562)
                      .+.++++++.++. +|..+  .++|++|++++|++.+..+..+..+++|++|++++|.+.+..  +..+..+++|++|++
T Consensus         9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l   83 (177)
T 2o6r_A            9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP--DGVFDKLTKLTILYL   83 (177)
T ss_dssp             TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC--TTTTTTCTTCCEEEC
T ss_pred             CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC--hhHccCCCccCEEEC
Confidence            5677777777764 34322  357777777777777765666677777777777777776443  334455556666666


Q ss_pred             CCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccc
Q 048635          433 ASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG  510 (562)
Q Consensus       433 ~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~  510 (562)
                      ++|.++                       +..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus        84 ~~N~l~-----------------------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           84 HENKLQ-----------------------SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CSSCCC-----------------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCCcc-----------------------ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            665552                       1222234455555555555555554333344555555555555555554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.58  E-value=3.1e-13  Score=134.80  Aligned_cols=240  Identities=14%  Similarity=0.105  Sum_probs=171.2

Q ss_pred             CCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCC
Q 048635          158 FLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSL  237 (562)
Q Consensus       158 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~  237 (562)
                      .+..++.+.+..+ ++.....            .+.++ +|+.+.+..+ ++.....+|.+ .+|+.+.+.. .+.....
T Consensus       111 ~~~~l~~i~ip~~-i~~I~~~------------aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~  173 (401)
T 4fdw_A          111 ILKGYNEIILPNS-VKSIPKD------------AFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKE  173 (401)
T ss_dssp             ECSSCSEEECCTT-CCEECTT------------TTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECS
T ss_pred             ecCCccEEEECCc-cCEehHh------------hcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehH
Confidence            4567777777542 3332222            23443 6999999876 66666777877 4799999987 4666677


Q ss_pred             CCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccC-CCCCCCCC
Q 048635          238 PNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPI-PSFHESRN  316 (562)
Q Consensus       238 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~~~  316 (562)
                      .+|..+++|+.+++..|.++.....+|. +..|+.+.+..+ ++......|.++++|+.+++..+ +.... ..|.. .+
T Consensus       174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~  249 (401)
T 4fdw_A          174 DIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SG  249 (401)
T ss_dssp             STTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CC
T ss_pred             HHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CC
Confidence            7899999999999999999876666666 689999999854 66567778999999999999875 33333 34445 78


Q ss_pred             CCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCccc-----ccCCccCCCCCCCCEEEcccCCCCCcc
Q 048635          317 LNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQ-----GVVPKSLANCNMLQVLDFRNNHISDNF  391 (562)
Q Consensus       317 L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~  391 (562)
                      |+.+.+.. .++            .++..+|.++++|+.+++.++.+.     .....+|.+|++|+.+++.+ .+..+.
T Consensus       250 L~~i~lp~-~i~------------~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~  315 (401)
T 4fdw_A          250 ITTVKLPN-GVT------------NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILG  315 (401)
T ss_dssp             CSEEEEET-TCC------------EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEEC
T ss_pred             ccEEEeCC-Ccc------------EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEh
Confidence            99999943 344            677777999999999999988765     45667788888888888873 466655


Q ss_pred             hHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCc
Q 048635          392 PCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNK  436 (562)
Q Consensus       392 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~  436 (562)
                      ..+|.+|++|+.+.+..+ +..+.  ..++..+ +|+.+++.+|.
T Consensus       316 ~~aF~~c~~L~~l~lp~~-l~~I~--~~aF~~~-~L~~l~l~~n~  356 (401)
T 4fdw_A          316 QGLLGGNRKVTQLTIPAN-VTQIN--FSAFNNT-GIKEVKVEGTT  356 (401)
T ss_dssp             TTTTTTCCSCCEEEECTT-CCEEC--TTSSSSS-CCCEEEECCSS
T ss_pred             hhhhcCCCCccEEEECcc-ccEEc--HHhCCCC-CCCEEEEcCCC
Confidence            667777788888877544 44333  3444444 45555444443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.57  E-value=3.9e-15  Score=127.29  Aligned_cols=129  Identities=20%  Similarity=0.206  Sum_probs=82.8

Q ss_pred             CCcCEEECcCCccc-ccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCE
Q 048635          351 CGLHILDLSGNQLQ-GVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQI  429 (562)
Q Consensus       351 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~  429 (562)
                      ++++.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+..  +..+..+++|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~   92 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGL--EVLAEKCPNLTH   92 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCT--HHHHHHCTTCCE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchH--HHHhhhCCCCCE
Confidence            34666666666665 45555556666666666666666654  44556666666666666665422  334444666666


Q ss_pred             EEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcC---hhccCCCCCCeeeCCC
Q 048635          430 VDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIP---SSFGNLKQIESLDLSM  505 (562)
Q Consensus       430 L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p---~~l~~l~~L~~L~Ls~  505 (562)
                      |++++|++++.                      ..+..+..+++|++|++++|.+++..+   ..+..+++|+.|++++
T Consensus        93 L~ls~N~i~~~----------------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           93 LNLSGNKIKDL----------------------STIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EECTTSCCCSH----------------------HHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             EECCCCcCCCh----------------------HHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            66666665321                      123557778889999999998886655   5788889999998863

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.57  E-value=5.2e-15  Score=159.32  Aligned_cols=185  Identities=22%  Similarity=0.241  Sum_probs=111.7

Q ss_pred             CCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEE
Q 048635          301 SNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVL  380 (562)
Q Consensus       301 ~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  380 (562)
                      .|.+......+..++.|+.|+|++|.+.            .+|...+ .+++|+.|+|++|.++ .+|..+..+++|++|
T Consensus       210 ~n~~~~~~~~~~~l~~L~~L~Ls~n~l~------------~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L  275 (727)
T 4b8c_D          210 ENRMVMPKDSKYDDQLWHALDLSNLQIF------------NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVL  275 (727)
T ss_dssp             ------------CCCCCCEEECTTSCCS------------CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEE
T ss_pred             ccceecChhhhccCCCCcEEECCCCCCC------------CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEE
Confidence            3444323344577888888998888876            6666634 7889999999999999 788889999999999


Q ss_pred             EcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhh--hhhhhhhhC
Q 048635          381 DFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTL--GMRYQATNK  458 (562)
Q Consensus       381 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~~~~~~  458 (562)
                      +|++|.++. +|..+..+++|++|+|++|.+.   .+|..+..+++|++|+|++|++++.+|..+....  .+......+
T Consensus       276 ~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~---~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N  351 (727)
T 4b8c_D          276 DLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT---TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDN  351 (727)
T ss_dssp             ECTTSCCSS-CCSSGGGGTTCSEEECCSSCCC---CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHC
T ss_pred             eCcCCcCCc-cChhhcCCCCCCEEECCCCCCC---ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccC
Confidence            999999995 6888999999999999999987   3477799999999999999999888776654332  222233355


Q ss_pred             CCcccccccccCcCCCCEEeCcCC--------cCccCcChhccCCCCCCeeeCCCCccc
Q 048635          459 RCRDQATEEMGRFKSLYALNMSHN--------ALTGSIPSSFGNLKQIESLDLSMNNLS  509 (562)
Q Consensus       459 ~~~~~~~~~l~~l~~L~~L~Ls~n--------~i~~~~p~~l~~l~~L~~L~Ls~n~l~  509 (562)
                      .+.+.+|.      .|+.|++++|        .+.+..+..+..+..++...+++|-+.
T Consensus       352 ~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          352 RPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             CCCCCCCC------C-----------------------------------------CCC
T ss_pred             cccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence            66666654      3445666665        223333333444555555555555553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.55  E-value=6.9e-14  Score=123.27  Aligned_cols=131  Identities=18%  Similarity=0.156  Sum_probs=70.2

Q ss_pred             CEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhh
Q 048635          378 QVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATN  457 (562)
Q Consensus       378 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~  457 (562)
                      +.+++++++++.. |..  ..++|++|++++|.+.+..  +..+..+++|++|++++|.++                   
T Consensus        10 ~~l~~~~~~l~~~-p~~--~~~~l~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~-------------------   65 (177)
T 2o6r_A           10 TEIRCNSKGLTSV-PTG--IPSSATRLELESNKLQSLP--HGVFDKLTQLTKLSLSQNQIQ-------------------   65 (177)
T ss_dssp             TEEECCSSCCSSC-CTT--CCTTCSEEECCSSCCCCCC--TTTTTTCTTCSEEECCSSCCC-------------------
T ss_pred             CEEEecCCCCccC-CCC--CCCCCcEEEeCCCcccEeC--HHHhcCcccccEEECCCCcce-------------------
Confidence            4555555555542 222  1245666666666655433  334455566666666666552                   


Q ss_pred             CCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceecC
Q 048635          458 KRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQI  536 (562)
Q Consensus       458 ~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~  536 (562)
                          +..+..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++.+..
T Consensus        66 ----~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           66 ----SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             ----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             ----EeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence                122233455556666666666666444444555666666666666666444444455566666666666655443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.54  E-value=2.6e-14  Score=125.78  Aligned_cols=133  Identities=14%  Similarity=0.112  Sum_probs=91.6

Q ss_pred             CCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhh
Q 048635          371 LANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLG  450 (562)
Q Consensus       371 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  450 (562)
                      +..+++|++|++++|+++.. +......++|++|++++|.+.+.    ..+..+++|++|++++|.+++           
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~----~~l~~l~~L~~L~Ls~N~l~~-----------   78 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL----DGFPLLRRLKTLLVNNNRICR-----------   78 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE----CCCCCCSSCCEEECCSSCCCE-----------
T ss_pred             cCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc----cccccCCCCCEEECCCCcccc-----------
Confidence            34556677777777776653 33223334777777777777653    456667777788887777731           


Q ss_pred             hhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcCh--hccCCCCCCeeeCCCCcccccChh----hhcCCCCCCe
Q 048635          451 MRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPS--SFGNLKQIESLDLSMNNLSGKIPA----QLASLNFLSV  524 (562)
Q Consensus       451 l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~  524 (562)
                                  ..+..+..+++|+.|++++|.++ .+|.  .+..+++|+.|++++|.++ .+|.    .+..+++|++
T Consensus        79 ------------~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~  144 (176)
T 1a9n_A           79 ------------IGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRV  144 (176)
T ss_dssp             ------------ECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSE
T ss_pred             ------------cCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccce
Confidence                        11222467788888888888886 4554  6788888888888888887 4555    3778888888


Q ss_pred             EeCcCCcce
Q 048635          525 LNLSYNNLV  533 (562)
Q Consensus       525 L~l~~n~l~  533 (562)
                      ||+++|...
T Consensus       145 Ld~~~n~~~  153 (176)
T 1a9n_A          145 LDFQKVKLK  153 (176)
T ss_dssp             ETTEECCHH
T ss_pred             eCCCcCCHH
Confidence            888888765

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.51  E-value=2.1e-13  Score=121.65  Aligned_cols=128  Identities=20%  Similarity=0.182  Sum_probs=86.0

Q ss_pred             eeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCC
Q 048635          296 HVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCN  375 (562)
Q Consensus       296 ~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~  375 (562)
                      .++++++.+...+..+  .++|++|++++|.++            .+|.. +..+++|+.|++++|.+++..+.+|..++
T Consensus        14 ~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~------------~ip~~-~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~   78 (193)
T 2wfh_A           14 VVRCSNKGLKVLPKGI--PRDVTELYLDGNQFT------------LVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMT   78 (193)
T ss_dssp             EEECTTSCCSSCCSCC--CTTCCEEECCSSCCC------------SCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             EEEcCCCCCCcCCCCC--CCCCCEEECCCCcCc------------hhHHH-hhcccCCCEEECCCCcCCEeCHhHccCCC
Confidence            4445555444332222  235666666666554            45533 66677777777777777776667777778


Q ss_pred             CCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCc
Q 048635          376 MLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGR  440 (562)
Q Consensus       376 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  440 (562)
                      +|++|+|++|++++..+..|..+++|++|++++|.+....  +..+..+++|+.|++++|++...
T Consensus        79 ~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A           79 QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP--EGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCC--TTTTTTCTTCCEEECCSSCEECS
T ss_pred             CCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeC--hhhhhcCccccEEEeCCCCeecC
Confidence            8888888888887776777777888888888888777544  45567778888888888877543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=2.8e-14  Score=125.59  Aligned_cols=132  Identities=19%  Similarity=0.199  Sum_probs=79.8

Q ss_pred             CCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCC
Q 048635          349 RNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQ  428 (562)
Q Consensus       349 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~  428 (562)
                      .+++|+.|++++|.++. ++......++|+.|++++|.+++.  ..+..+++|++|++++|.+.+..  +..+..+++|+
T Consensus        17 ~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~   91 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIG--EGLDQALPDLT   91 (176)
T ss_dssp             CTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEEC--SCHHHHCTTCC
T ss_pred             CcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccC--cchhhcCCCCC
Confidence            34455555555555552 232222223566666666665553  34555666666666666665432  22235566666


Q ss_pred             EEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccc--cccCcCCCCEEeCcCCcCccCcChh----ccCCCCCCeee
Q 048635          429 IVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATE--EMGRFKSLYALNMSHNALTGSIPSS----FGNLKQIESLD  502 (562)
Q Consensus       429 ~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~l~~l~~L~~L~Ls~n~i~~~~p~~----l~~l~~L~~L~  502 (562)
                      +|++++|+++                        .++.  .+..+++|+.|++++|.++ .+|..    +..+++|+.|+
T Consensus        92 ~L~L~~N~i~------------------------~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld  146 (176)
T 1a9n_A           92 ELILTNNSLV------------------------ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  146 (176)
T ss_dssp             EEECCSCCCC------------------------CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             EEECCCCcCC------------------------cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeC
Confidence            6666666652                        1222  5677888888899888888 45554    78889999999


Q ss_pred             CCCCcccc
Q 048635          503 LSMNNLSG  510 (562)
Q Consensus       503 Ls~n~l~~  510 (562)
                      +++|.+.+
T Consensus       147 ~~~n~~~~  154 (176)
T 1a9n_A          147 FQKVKLKE  154 (176)
T ss_dssp             TEECCHHH
T ss_pred             CCcCCHHH
Confidence            99888764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.47  E-value=2.2e-16  Score=142.17  Aligned_cols=150  Identities=19%  Similarity=0.220  Sum_probs=110.0

Q ss_pred             CcCEEECcCCcccccCCc------cCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCC
Q 048635          352 GLHILDLSGNQLQGVVPK------SLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWP  425 (562)
Q Consensus       352 ~L~~L~L~~n~l~~~~~~------~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~  425 (562)
                      .++.++++++.+.+..|.      .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+..   ++..+..++
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~---l~~~~~~~~   93 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK---IENLDAVAD   93 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS---CSSHHHHHH
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc---ccchhhcCC
Confidence            344455555555544443      67778888888888888877 45 67788888888888888773   355555668


Q ss_pred             CCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcC-hhccCCCCCCeeeCC
Q 048635          426 LLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIP-SSFGNLKQIESLDLS  504 (562)
Q Consensus       426 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p-~~l~~l~~L~~L~Ls  504 (562)
                      +|++|++++|++++                        ++ .+..+++|+.|++++|.+++..+ ..+..+++|++|+++
T Consensus        94 ~L~~L~L~~N~l~~------------------------l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~  148 (198)
T 1ds9_A           94 TLEELWISYNQIAS------------------------LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLA  148 (198)
T ss_dssp             HCSEEEEEEEECCC------------------------HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEEC
T ss_pred             cCCEEECcCCcCCc------------------------CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEec
Confidence            88888888888742                        22 46677889999999999884332 468889999999999


Q ss_pred             CCcccccChh----------hhcCCCCCCeEeCcCCcce
Q 048635          505 MNNLSGKIPA----------QLASLNFLSVLNLSYNNLV  533 (562)
Q Consensus       505 ~n~l~~~~p~----------~l~~l~~L~~L~l~~n~l~  533 (562)
                      +|++++..|.          .+..+++|++||  +|+++
T Consensus       149 ~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          149 GNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            9998876554          377889999887  67665

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.40  E-value=1.5e-12  Score=113.53  Aligned_cols=105  Identities=20%  Similarity=0.246  Sum_probs=52.7

Q ss_pred             CCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhh
Q 048635          377 LQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQAT  456 (562)
Q Consensus       377 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~  456 (562)
                      .+.+++++|.++. +|..+  .++|++|++++|.+.+..  +..+..+++|++|++++|+++                  
T Consensus        11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~--~~~~~~l~~L~~L~Ls~N~l~------------------   67 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLE--PGVFDRLTQLTRLDLDNNQLT------------------   67 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCC--TTTTTTCTTCSEEECCSSCCC------------------
T ss_pred             CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccC--hhhhcCcccCCEEECCCCCcC------------------
Confidence            3566666666655 33322  245666666666655443  444455555555555555542                  


Q ss_pred             hCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCccc
Q 048635          457 NKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS  509 (562)
Q Consensus       457 ~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~  509 (562)
                           +..+..+..+++|++|+|++|.+++..+..|..+++|++|+|++|.++
T Consensus        68 -----~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           68 -----VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             -----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             -----ccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence                 112222344455555555555555433334555555555555555544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.37  E-value=1e-10  Score=116.95  Aligned_cols=320  Identities=12%  Similarity=0.120  Sum_probs=206.6

Q ss_pred             cccCCCC-CCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCC
Q 048635           71 FGLANLT-NLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLG  149 (562)
Q Consensus        71 ~~l~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~  149 (562)
                      .+|.+++ .|+.+.+..+ ++..-..+|.+|.+|+.+.+..+...     .+......+|.++.+|+.+.+..+ ++.++
T Consensus        57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~-----~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~  129 (394)
T 4gt6_A           57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPS-----CVKKIGRQAFMFCSELTDIPILDS-VTEID  129 (394)
T ss_dssp             TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCC-----CCCEECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred             hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCC-----eeeEechhhchhcccceeeccCCc-cceeh
Confidence            4677775 5999999764 66667788999999999998765311     122233456888888888777654 55555


Q ss_pred             CccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccC
Q 048635          150 TERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSY  229 (562)
Q Consensus       150 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~  229 (562)
                      .   .++..+.+|+.+.+..+ +....            ...+..+..|+.+.+..+ ++.....+|. ...|+.+.+..
T Consensus       130 ~---~aF~~c~~L~~i~lp~~-~~~I~------------~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~  191 (394)
T 4gt6_A          130 S---EAFHHCEELDTVTIPEG-VTSVA------------DGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPA  191 (394)
T ss_dssp             T---TTTTTCTTCCEEECCTT-CCEEC------------TTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECT
T ss_pred             h---hhhhhhcccccccccce-eeeec------------ccceecccccccccccce-eeEecccccc-ccceeEEEECC
Confidence            4   56778889999888643 21111            123566778888888765 4434444554 46788888876


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCC-------------cCCCCCcEEEccCCcccccCCccCCCCCCCCe
Q 048635          230 NPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPI-------------GILKYLTRVDLRSCSFTGPIPTSTTNLTQLFH  296 (562)
Q Consensus       230 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-------------~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  296 (562)
                      + .......+|..+..++................+             .....+..+.+.. .++......|..+..|+.
T Consensus       192 ~-~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~  269 (394)
T 4gt6_A          192 K-VTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLAS  269 (394)
T ss_dssp             T-CCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCE
T ss_pred             c-ccccccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccE
Confidence            5 344555667777777777665544321110000             1112233444432 233334556788889999


Q ss_pred             eeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCC
Q 048635          297 VDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNM  376 (562)
Q Consensus       297 L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~  376 (562)
                      +.+.++...-....|..+++|+.+.+.. .++            .++..+|.++.+|+.+.+..+ ++.....+|.+|.+
T Consensus       270 i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~------------~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          270 VKMPDSVVSIGTGAFMNCPALQDIEFSS-RIT------------ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ  335 (394)
T ss_dssp             EECCTTCCEECTTTTTTCTTCCEEECCT-TCC------------EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             EecccccceecCcccccccccccccCCC-ccc------------ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence            9887765443445667888999998863 333            677777999999999999764 55566788999999


Q ss_pred             CCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcC
Q 048635          377 LQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKF  437 (562)
Q Consensus       377 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~  437 (562)
                      |+.+.+..+ ++.+...+|.+|++|+.+++.++...     ...+..+..|+.+.+..+.+
T Consensus       336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~-----~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ-----WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH-----HHTCBCCCCC----------
T ss_pred             CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee-----hhhhhccCCCCEEEeCCCCE
Confidence            999999654 66666778999999999999887644     23456677888887766554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.36  E-value=4.2e-12  Score=111.09  Aligned_cols=104  Identities=23%  Similarity=0.276  Sum_probs=56.7

Q ss_pred             CEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhh
Q 048635          378 QVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATN  457 (562)
Q Consensus       378 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~  457 (562)
                      +.+++++|++.. +|..+  .++|++|++++|.+.+..  +..+..+++|++|++++|+++                   
T Consensus        15 ~~l~~~~n~l~~-iP~~~--~~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~-------------------   70 (174)
T 2r9u_A           15 TLVNCQNIRLAS-VPAGI--PTDKQRLWLNNNQITKLE--PGVFDHLVNLQQLYFNSNKLT-------------------   70 (174)
T ss_dssp             SEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCC-------------------
T ss_pred             cEEEeCCCCCCc-cCCCc--CCCCcEEEeCCCCccccC--HHHhcCCcCCCEEECCCCCCC-------------------
Confidence            566777776655 33333  256666666666666543  445555566666666666552                   


Q ss_pred             CCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCccc
Q 048635          458 KRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS  509 (562)
Q Consensus       458 ~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~  509 (562)
                          +..+..+..+++|+.|+|++|.+++..+..|..+++|+.|+|++|.+.
T Consensus        71 ----~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           71 ----AIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             ----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ----ccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence                111222345555555566555555433334555555555555555555

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.36  E-value=8.5e-15  Score=131.67  Aligned_cols=135  Identities=19%  Similarity=0.176  Sum_probs=109.4

Q ss_pred             CCCCCEEEcccCCCCCcch------HHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhh
Q 048635          374 CNMLQVLDFRNNHISDNFP------CWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCST  447 (562)
Q Consensus       374 l~~L~~L~L~~n~l~~~~~------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  447 (562)
                      ...++.++++++.+.+..|      ..+..+++|++|++++|.+.+   ++ .+..+++|++|++++|.+.         
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~---l~-~~~~l~~L~~L~l~~n~l~---------   83 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK---IS-SLSGMENLRILSLGRNLIK---------   83 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC---CC-CHHHHTTCCEEEEEEEEEC---------
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc---cc-ccccCCCCCEEECCCCCcc---------
Confidence            3445555555555554444      489999999999999999886   35 7888999999999999983         


Q ss_pred             hhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccCh-hhhcCCCCCCeEe
Q 048635          448 TLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP-AQLASLNFLSVLN  526 (562)
Q Consensus       448 ~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~  526 (562)
                                     .+|..+..+++|++|++++|.+++ +| .+..+++|++|++++|++++..+ ..+..+++|++|+
T Consensus        84 ---------------~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~  146 (198)
T 1ds9_A           84 ---------------KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL  146 (198)
T ss_dssp             ---------------SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEE
T ss_pred             ---------------cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEE
Confidence                           345556677899999999999995 55 68899999999999999995333 4789999999999


Q ss_pred             CcCCcceecCCC
Q 048635          527 LSYNNLVGQIPT  538 (562)
Q Consensus       527 l~~n~l~~~~p~  538 (562)
                      +++|++.+.+|.
T Consensus       147 l~~N~l~~~~~~  158 (198)
T 1ds9_A          147 LAGNPLYNDYKE  158 (198)
T ss_dssp             ECSCHHHHHHHT
T ss_pred             ecCCcccccccc
Confidence            999999887765

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.36  E-value=3.7e-14  Score=140.08  Aligned_cols=195  Identities=15%  Similarity=0.125  Sum_probs=124.0

Q ss_pred             CCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCC-CCCCCCEEEcccCCCCCcch
Q 048635          314 SRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLA-NCNMLQVLDFRNNHISDNFP  392 (562)
Q Consensus       314 ~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~  392 (562)
                      .+.|+.|++++|.++..-       ...+........++|++|++++|.+++.....+. .+++|++|+|++|.+++...
T Consensus        71 ~~~L~~L~Ls~n~l~~~~-------~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~  143 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVK-------CTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEAC  143 (372)
T ss_dssp             HTTCCEEECTTSCCCHHH-------HHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHH
T ss_pred             HhhCCEEEecCCCCCHHH-------HHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHH
Confidence            567899999988876110       0011222112335799999999988754333332 35678999999999887544


Q ss_pred             HHh-----hcCCCCCEEEccCcccceec--CCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCccccc
Q 048635          393 CWL-----RNASSLQVLVLRSNNFSGHI--SYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQAT  465 (562)
Q Consensus       393 ~~l-----~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  465 (562)
                      ..+     ...++|++|++++|.++...  .+...+..+++|++|++++|.+++.-.                   ..+.
T Consensus       144 ~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~-------------------~~L~  204 (372)
T 3un9_A          144 KDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGL-------------------ELLA  204 (372)
T ss_dssp             HHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHH-------------------HHHH
T ss_pred             HHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHH-------------------HHHH
Confidence            444     24678999999999886422  123344567889999999988743211                   1234


Q ss_pred             ccccCcCCCCEEeCcCCcCccC----cChhccCCCCCCeeeCCCCcccccChhhhcCCCC-----CCeEe--CcCCccee
Q 048635          466 EEMGRFKSLYALNMSHNALTGS----IPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNF-----LSVLN--LSYNNLVG  534 (562)
Q Consensus       466 ~~l~~l~~L~~L~Ls~n~i~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~-----L~~L~--l~~n~l~~  534 (562)
                      ..+...++|++|+|++|.|++.    ++..+..+++|++|+|++|.|++.....+..+..     |+.+.  +..|.+..
T Consensus       205 ~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~  284 (372)
T 3un9_A          205 AQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE  284 (372)
T ss_dssp             HHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHH
T ss_pred             HHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCH
Confidence            4566677899999999988753    3344556788999999999888755555544321     66666  66666653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.31  E-value=1.3e-11  Score=107.51  Aligned_cols=108  Identities=19%  Similarity=0.143  Sum_probs=87.2

Q ss_pred             CCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhh
Q 048635          317 LNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLR  396 (562)
Q Consensus       317 L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~  396 (562)
                      .+.+++++|.++            .+|....   ++++.|++++|.+++..+..|..+++|++|+|++|++++..+..|.
T Consensus        11 ~~~l~~s~n~l~------------~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~   75 (170)
T 3g39_A           11 GTTVDCSGKSLA------------SVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD   75 (170)
T ss_dssp             TTEEECTTSCCS------------SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT
T ss_pred             CCEEEeCCCCcC------------ccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhcc
Confidence            456666666665            5665422   5688999999999888888889999999999999999987777788


Q ss_pred             cCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcC
Q 048635          397 NASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRL  441 (562)
Q Consensus       397 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  441 (562)
                      .+++|++|++++|++.+..  +..+..+++|++|++++|++....
T Consensus        76 ~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           76 KLTQLTQLSLNDNQLKSIP--RGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             TCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CCCCCCEEECCCCccCEeC--HHHhcCCCCCCEEEeCCCCCCCCc
Confidence            8999999999999988655  556888899999999999986554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.29  E-value=7.4e-14  Score=137.87  Aligned_cols=188  Identities=16%  Similarity=0.108  Sum_probs=97.0

Q ss_pred             CCCCeeeCcCCcccccCC-C----CC-CCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccc
Q 048635          292 TQLFHVDFSSNHFSGPIP-S----FH-ESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQG  365 (562)
Q Consensus       292 ~~L~~L~l~~n~~~~~~~-~----~~-~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~  365 (562)
                      +.|++|++++|.++.... .    +. ..++|++|++++|.++.           .........+++|+.|++++|.+++
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~-----------~~~~~l~~~L~~L~~L~Ls~n~l~~  140 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDP-----------AGLRTLLPVFLRARKLGLQLNSLGP  140 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCH-----------HHHHHTHHHHHTEEEEECCSSCCCH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCH-----------HHHHHHHHHHHhccHhhcCCCCCCH
Confidence            456777777777654211 1    12 23567777777766541           1111112233456777777776654


Q ss_pred             cCCccC-----CCCCCCCEEEcccCCCCCc----chHHhhcCCCCCEEEccCcccceec--CCCCCCCCCCCCCEEEcCC
Q 048635          366 VVPKSL-----ANCNMLQVLDFRNNHISDN----FPCWLRNASSLQVLVLRSNNFSGHI--SYPRNNVSWPLLQIVDFAS  434 (562)
Q Consensus       366 ~~~~~l-----~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~~~L~~L~l~~  434 (562)
                      .....+     ...++|++|+|++|.+++.    ++..+..+++|++|+|++|.+....  .+...+...++|++|++++
T Consensus       141 ~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~  220 (372)
T 3un9_A          141 EACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAY  220 (372)
T ss_dssp             HHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCS
T ss_pred             HHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCC
Confidence            433332     2356677777777776542    2333455677777777777765321  1123344556677777777


Q ss_pred             CcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCC---CC--CCeee--CCCCc
Q 048635          435 NKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNL---KQ--IESLD--LSMNN  507 (562)
Q Consensus       435 n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l---~~--L~~L~--Ls~n~  507 (562)
                      |.+++...                   ..+...+...++|++|+|++|.|++.....+..+   ..  |+.+.  +..+.
T Consensus       221 N~i~~~g~-------------------~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~  281 (372)
T 3un9_A          221 NGAGDTAA-------------------LALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTA  281 (372)
T ss_dssp             SCCCHHHH-------------------HHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----
T ss_pred             CCCCHHHH-------------------HHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCc
Confidence            77642211                   1223334455667777777777765444343322   11  55555  55555


Q ss_pred             cc
Q 048635          508 LS  509 (562)
Q Consensus       508 l~  509 (562)
                      ++
T Consensus       282 ~~  283 (372)
T 3un9_A          282 VS  283 (372)
T ss_dssp             CH
T ss_pred             cC
Confidence            54

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.29  E-value=7.2e-10  Score=110.80  Aligned_cols=133  Identities=11%  Similarity=0.143  Sum_probs=69.1

Q ss_pred             CccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhh
Q 048635          368 PKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCST  447 (562)
Q Consensus       368 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  447 (562)
                      ..+|..+..|+.+.+.++.. ......|.++++|+.+.+. +.+....  ..++..+.+|+.+++..+ +          
T Consensus       258 ~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~--~~aF~~c~~L~~i~lp~~-v----------  322 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELP--ESVFAGCISLKSIDIPEG-I----------  322 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEEC--TTTTTTCTTCCEEECCTT-C----------
T ss_pred             cceeeecccccEEecccccc-eecCcccccccccccccCC-CcccccC--ceeecCCCCcCEEEeCCc-c----------
Confidence            34455555555555543321 2223345555555555554 2233333  445555566666665432 1          


Q ss_pred             hhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeC
Q 048635          448 TLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNL  527 (562)
Q Consensus       448 ~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l  527 (562)
                                   ......+|.+|++|+.+.+..+ ++.....+|.+|++|+.+++.++....   ..+.....|+.+.+
T Consensus       323 -------------~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i  385 (394)
T 4gt6_A          323 -------------TQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPV  385 (394)
T ss_dssp             -------------CEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-----
T ss_pred             -------------cEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEe
Confidence                         1222345677777888887544 554555678888888888888776442   45667778888877


Q ss_pred             cCCcc
Q 048635          528 SYNNL  532 (562)
Q Consensus       528 ~~n~l  532 (562)
                      ..+.+
T Consensus       386 ~~~~~  390 (394)
T 4gt6_A          386 APGSI  390 (394)
T ss_dssp             -----
T ss_pred             CCCCE
Confidence            76654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.28  E-value=2.5e-11  Score=106.11  Aligned_cols=106  Identities=17%  Similarity=0.124  Sum_probs=84.8

Q ss_pred             CEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhc
Q 048635          318 NYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRN  397 (562)
Q Consensus       318 ~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~  397 (562)
                      +.+++++|.++            .+|....   ++|+.|++++|.+++..|..|..+++|++|+|++|++++..+..|..
T Consensus        15 ~~l~~~~n~l~------------~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~   79 (174)
T 2r9u_A           15 TLVNCQNIRLA------------SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK   79 (174)
T ss_dssp             SEEECCSSCCS------------SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             cEEEeCCCCCC------------ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCC
Confidence            45666666554            6665522   56889999999998888888899999999999999998876667788


Q ss_pred             CCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCc
Q 048635          398 ASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGR  440 (562)
Q Consensus       398 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  440 (562)
                      +++|++|++++|.+.+..  +..+..+++|++|++++|++...
T Consensus        80 l~~L~~L~L~~N~l~~l~--~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           80 LTQLTQLDLNDNHLKSIP--RGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CTTCCEEECCSSCCCCCC--TTTTTTCTTCSEEECCSSCBCTT
T ss_pred             cchhhEEECCCCccceeC--HHHhccccCCCEEEeCCCCcccc
Confidence            999999999999988654  45588899999999999998643

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.15  E-value=1.9e-08  Score=99.93  Aligned_cols=60  Identities=17%  Similarity=0.177  Sum_probs=30.5

Q ss_pred             ccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCc
Q 048635          468 MGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLS  528 (562)
Q Consensus       468 l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~  528 (562)
                      +..+++|+.+.+.++.++.....+|.+|++|+.+.|..+ ++.....+|.++++|+++++.
T Consensus       282 F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          282 CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             cccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            444555555555555554333445555555555555432 443334455555555555554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.09  E-value=3.4e-10  Score=111.21  Aligned_cols=105  Identities=20%  Similarity=0.153  Sum_probs=78.0

Q ss_pred             CEEEcccC-CCCCcchHHhhcCCCCCEEEccC-cccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhh
Q 048635          378 QVLDFRNN-HISDNFPCWLRNASSLQVLVLRS-NNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQA  455 (562)
Q Consensus       378 ~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~  455 (562)
                      ..++.+++ .++. +|. +..+++|++|+|++ |.+.+..  +..+..+++|++|+|++|+++                 
T Consensus        11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~--~~~~~~l~~L~~L~l~~N~l~-----------------   69 (347)
T 2ifg_A           11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLE--LRDLRGLGELRNLTIVKSGLR-----------------   69 (347)
T ss_dssp             SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEEC--GGGSCSCCCCSEEECCSSCCC-----------------
T ss_pred             CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcC--hhHhccccCCCEEECCCCccc-----------------
Confidence            35677777 7777 566 88888888888886 8887765  566778888888888888873                 


Q ss_pred             hhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccc
Q 048635          456 TNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG  510 (562)
Q Consensus       456 ~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~  510 (562)
                            +..+..|..+++|+.|+|++|.+++..+..|..++ |+.|+|++|.+..
T Consensus        70 ------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           70 ------FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             ------EECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             ------eeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence                  44455677788888888888888865555566555 8888888888763

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.99  E-value=2e-09  Score=105.66  Aligned_cols=96  Identities=18%  Similarity=0.125  Sum_probs=63.0

Q ss_pred             cCCccccCCCCCcCEEECcC-CcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCC
Q 048635          341 TLSDIIFPRNCGLHILDLSG-NQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPR  419 (562)
Q Consensus       341 ~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  419 (562)
                      .+|.  +..+.+|+.|+|++ |.+++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++.+..  +.
T Consensus        23 ~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~--~~   98 (347)
T 2ifg_A           23 SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS--WK   98 (347)
T ss_dssp             TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC--ST
T ss_pred             ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC--HH
Confidence            4555  55666677777775 6776666666777777777777777777766666777777777777777776443  33


Q ss_pred             CCCCCCCCCEEEcCCCcCCCcC
Q 048635          420 NNVSWPLLQIVDFASNKFGGRL  441 (562)
Q Consensus       420 ~~~~~~~L~~L~l~~n~~~~~~  441 (562)
                      .+..++ |+.|++.+|++....
T Consensus        99 ~~~~~~-L~~l~l~~N~~~c~c  119 (347)
T 2ifg_A           99 TVQGLS-LQELVLSGNPLHCSC  119 (347)
T ss_dssp             TTCSCC-CCEEECCSSCCCCCG
T ss_pred             HcccCC-ceEEEeeCCCccCCC
Confidence            333333 777777777775443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.96  E-value=9e-08  Score=95.04  Aligned_cols=317  Identities=9%  Similarity=0.074  Sum_probs=163.7

Q ss_pred             ccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCC
Q 048635          127 NFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQC  206 (562)
Q Consensus       127 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~  206 (562)
                      .++....+|+.+.+.. .++.++.   .++.+|.+|+.+++..+ ++.....+            +.++ +|+.+.+..+
T Consensus        40 ~~~~~~~~i~~v~ip~-~vt~Ig~---~aF~~C~~L~~I~lp~~-v~~Ig~~a------------F~~c-~l~~i~~~~~  101 (379)
T 4h09_A           40 PWYKDRDRISEVRVNS-GITSIGE---ANFNSCYNMTKVTVAST-VTSIGDGA------------FADT-KLQSYTGMER  101 (379)
T ss_dssp             TTGGGGGGCSEEEECT-TEEEECT---TTTTTCTTCCEEEECTT-CCEECTTT------------TTTC-CCCEEEECTT
T ss_pred             cccccccCCEEEEeCC-CccChHH---HHhhCCCCCCEEEeCCc-ceEechhh------------hcCC-CCceEECCce
Confidence            3456667788877764 3677775   57788888998888643 33332222            2333 4666655433


Q ss_pred             cCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCc
Q 048635          207 DLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPT  286 (562)
Q Consensus       207 ~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  286 (562)
                       ++.....+|.. .+|+.+.+..+ +.......|... +++.+.+..+ ++......+..+..++.+.+..+........
T Consensus       102 -l~~I~~~aF~~-~~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~  176 (379)
T 4h09_A          102 -VKKFGDYVFQG-TDLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAEN  176 (379)
T ss_dssp             -CCEECTTTTTT-CCCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEET
T ss_pred             -eeEeccceecc-CCcccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeeccc
Confidence             33233344443 46777777654 233333334332 4555544332 2223334455566666665544322110000


Q ss_pred             cCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCccccc
Q 048635          287 STTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGV  366 (562)
Q Consensus       287 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~  366 (562)
                       .........          ....+.....+..+.+.....             .+....+.....++.+.+..+ +...
T Consensus       177 -~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-------------~i~~~~f~~~~~l~~i~~~~~-~~~i  231 (379)
T 4h09_A          177 -YVLYNKNKT----------ILESYPAAKTGTEFTIPSTVK-------------TVTAYGFSYGKNLKKITITSG-VTTL  231 (379)
T ss_dssp             -TEEEETTSS----------EEEECCTTCCCSEEECCTTCC-------------EECTTTTTTCSSCSEEECCTT-CCEE
T ss_pred             -ceecccccc----------eecccccccccccccccccee-------------EEeecccccccccceeeeccc-eeEE
Confidence             000000000          000112223333333322211             222233555556666666543 3334


Q ss_pred             CCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhh
Q 048635          367 VPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCS  446 (562)
Q Consensus       367 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  446 (562)
                      ...++..+..|+.+.+..+ ++.+....|.++.+|+.+.+..+ +....  ...+..+++|+.+.+.++.+.        
T Consensus       232 ~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~--~~aF~~c~~L~~i~l~~~~i~--------  299 (379)
T 4h09_A          232 GDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVP--YLLCSGCSNLTKVVMDNSAIE--------  299 (379)
T ss_dssp             CTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEEC--TTTTTTCTTCCEEEECCTTCC--------
T ss_pred             ccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecc--ccccccccccccccccccccc--------
Confidence            4556666777777777654 44444455666777777776543 33333  455666777777777665541        


Q ss_pred             hhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCC
Q 048635          447 TTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLN  520 (562)
Q Consensus       447 ~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  520 (562)
                                     .....+|.++++|+.+.|..+ ++.....+|.+|++|+.+.+..+ ++.....+|.++.
T Consensus       300 ---------------~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          300 ---------------TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             ---------------EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             ---------------eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence                           223345677777888887644 55344567888888888887654 5544555666553

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.88  E-value=2.5e-09  Score=104.50  Aligned_cols=160  Identities=16%  Similarity=0.177  Sum_probs=107.7

Q ss_pred             cCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhh--cCCCCCEEEccC--cccceec---CCCC
Q 048635          347 FPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLR--NASSLQVLVLRS--NNFSGHI---SYPR  419 (562)
Q Consensus       347 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~l~~--n~l~~~~---~~~~  419 (562)
                      +..+++|+.|.+++|.-. .++. + .+++|++|+|..|.+.......+.  .+|+|+.|+|+.  |...+..   .+..
T Consensus       168 l~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~  244 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP  244 (362)
T ss_dssp             HHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred             HhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence            566778999999887311 2222 3 378999999999988765544554  689999999853  2211110   1111


Q ss_pred             CC--CCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccC----cChhcc
Q 048635          420 NN--VSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGS----IPSSFG  493 (562)
Q Consensus       420 ~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~----~p~~l~  493 (562)
                      .+  ..+|+|++|++.+|.+.+..+..+                    .....+++|++|+|+.|.+++.    ++..+.
T Consensus       245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~l--------------------a~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~  304 (362)
T 2ra8_A          245 LFSKDRFPNLKWLGIVDAEEQNVVVEMF--------------------LESDILPQLETMDISAGVLTDEGARLLLDHVD  304 (362)
T ss_dssp             GSCTTTCTTCCEEEEESCTTHHHHHHHH--------------------HHCSSGGGCSEEECCSSCCBHHHHHHHHTTHH
T ss_pred             HHhcCCCCCcCEEeCCCCCCchHHHHHH--------------------HhCccCCCCCEEECCCCCCChHHHHHHHhhcc
Confidence            12  357999999999998853222111                    0113468999999999999864    344456


Q ss_pred             CCCCCCeeeCCCCcccccChhhhcC-CCCCCeEeCcCCc
Q 048635          494 NLKQIESLDLSMNNLSGKIPAQLAS-LNFLSVLNLSYNN  531 (562)
Q Consensus       494 ~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~l~~n~  531 (562)
                      .+++|+.|++++|.+++.....+.. +  ..++++++++
T Consensus       305 ~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          305 KIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             cCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            7899999999999988655555554 3  4778999887

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.80  E-value=1.6e-09  Score=105.93  Aligned_cols=145  Identities=17%  Similarity=0.234  Sum_probs=98.0

Q ss_pred             CCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCC--CCCCCCCEEEcCCC--cCCCcCC
Q 048635          367 VPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNN--VSWPLLQIVDFASN--KFGGRLS  442 (562)
Q Consensus       367 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~--~~~~~L~~L~l~~n--~~~~~~~  442 (562)
                      +...+..+++|++|++++|.-.. .+. + .+++|++|++..|.+....  ...+  ..+|+|+.|+|+.+  ...+...
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~--l~~l~~~~lp~L~~L~L~~~~~~~~~~~~  238 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSV--VEDILGSDLPNLEKLVLYVGVEDYGFDGD  238 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHH--HHHHHHSBCTTCCEEEEECBCGGGTCCSC
T ss_pred             HHHHHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHH--HHHHHHccCCCCcEEEEeccccccccchh
Confidence            33455678999999999883222 222 3 3789999999988876432  1222  36899999998642  2111100


Q ss_pred             hhhhhhhhhhhhhhhCCCcccccccc--cCcCCCCEEeCcCCcCccCcChhcc---CCCCCCeeeCCCCccccc----Ch
Q 048635          443 QKCSTTLGMRYQATNKRCRDQATEEM--GRFKSLYALNMSHNALTGSIPSSFG---NLKQIESLDLSMNNLSGK----IP  513 (562)
Q Consensus       443 ~~~~~~~~l~~~~~~~~~~~~~~~~l--~~l~~L~~L~Ls~n~i~~~~p~~l~---~l~~L~~L~Ls~n~l~~~----~p  513 (562)
                                        ...+...+  ..+|+|+.|++++|.+.+..+..+.   .+++|++|+|+.|.+++.    ++
T Consensus       239 ------------------~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~  300 (362)
T 2ra8_A          239 ------------------MNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLL  300 (362)
T ss_dssp             ------------------GGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHH
T ss_pred             ------------------HHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHH
Confidence                              00111112  3578999999999999865444443   588999999999999874    34


Q ss_pred             hhhcCCCCCCeEeCcCCccee
Q 048635          514 AQLASLNFLSVLNLSYNNLVG  534 (562)
Q Consensus       514 ~~l~~l~~L~~L~l~~n~l~~  534 (562)
                      ..+..+++|+.|++++|.++.
T Consensus       301 ~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          301 DHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             TTHHHHTTCSEEECCSBBCCH
T ss_pred             hhcccCCcceEEECCCCcCCH
Confidence            445667999999999998863

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.75  E-value=4.5e-09  Score=92.69  Aligned_cols=67  Identities=16%  Similarity=0.214  Sum_probs=44.1

Q ss_pred             cccCcCCCCEEeCcCCcCccC----cChhccCCCCCCeeeC--CCCccccc----ChhhhcCCCCCCeEeCcCCcce
Q 048635          467 EMGRFKSLYALNMSHNALTGS----IPSSFGNLKQIESLDL--SMNNLSGK----IPAQLASLNFLSVLNLSYNNLV  533 (562)
Q Consensus       467 ~l~~l~~L~~L~Ls~n~i~~~----~p~~l~~l~~L~~L~L--s~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~  533 (562)
                      .+...++|++|+|++|.|++.    +...+...+.|++|+|  ++|.+.+.    +.+.+...++|++|++++|.+.
T Consensus        88 ~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           88 MLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            344456677777777777643    3455666677777777  67777653    3345556677888888888765

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.61  E-value=1.6e-08  Score=89.03  Aligned_cols=122  Identities=12%  Similarity=0.083  Sum_probs=67.9

Q ss_pred             cCCCCCCCCEEEcccC-CCCCc----chHHhhcCCCCCEEEccCcccceec--CCCCCCCCCCCCCEEEcCCCcCCCcCC
Q 048635          370 SLANCNMLQVLDFRNN-HISDN----FPCWLRNASSLQVLVLRSNNFSGHI--SYPRNNVSWPLLQIVDFASNKFGGRLS  442 (562)
Q Consensus       370 ~l~~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~  442 (562)
                      .+...+.|++|+|++| .+.+.    +...+...++|++|+|++|.+....  .+...+...+.|++|+|++|.+++.-.
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3444555555555555 55432    2223344455566666655554211  112223334556666666666632211


Q ss_pred             hhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeC--cCCcCccC----cChhccCCCCCCeeeCCCCcccc
Q 048635          443 QKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNM--SHNALTGS----IPSSFGNLKQIESLDLSMNNLSG  510 (562)
Q Consensus       443 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L--s~n~i~~~----~p~~l~~l~~L~~L~Ls~n~l~~  510 (562)
                                         ..+...+...++|++|+|  ++|.+++.    +.+.+...+.|++|+|++|.+..
T Consensus       111 -------------------~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          111 -------------------LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             -------------------HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             -------------------HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence                               123345566678888888  77888754    33455666888889988888763

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.35  E-value=2.1e-07  Score=79.71  Aligned_cols=85  Identities=13%  Similarity=0.092  Sum_probs=68.8

Q ss_pred             CCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCc-CccCcChhccCC----CCC
Q 048635          424 WPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNA-LTGSIPSSFGNL----KQI  498 (562)
Q Consensus       424 ~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~p~~l~~l----~~L  498 (562)
                      -..|++||+++|.++                       ......+..+++|+.|+|++|. +++..-..+..+    ++|
T Consensus        60 ~~~L~~LDLs~~~It-----------------------d~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L  116 (176)
T 3e4g_A           60 KYKIQAIDATDSCIM-----------------------SIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSM  116 (176)
T ss_dssp             CCCEEEEEEESCCCC-----------------------GGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHC
T ss_pred             CceEeEEeCcCCCcc-----------------------HHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCC
Confidence            357899999998873                       3344557789999999999995 887655666664    479


Q ss_pred             CeeeCCCCc-ccccChhhhcCCCCCCeEeCcCCc
Q 048635          499 ESLDLSMNN-LSGKIPAQLASLNFLSVLNLSYNN  531 (562)
Q Consensus       499 ~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~l~~n~  531 (562)
                      ++|+|++|. +++..-..+..+++|++|++++|+
T Consensus       117 ~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          117 LEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred             CEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence            999999985 888777778899999999999996

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.20  E-value=2e-06  Score=79.43  Aligned_cols=57  Identities=26%  Similarity=0.295  Sum_probs=28.0

Q ss_pred             ccCcCCCCEEeCcCCcCccCcChhccCCC--CCCeeeCCCCcccccCh-------hhhcCCCCCCeEe
Q 048635          468 MGRFKSLYALNMSHNALTGSIPSSFGNLK--QIESLDLSMNNLSGKIP-------AQLASLNFLSVLN  526 (562)
Q Consensus       468 l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~--~L~~L~Ls~n~l~~~~p-------~~l~~l~~L~~L~  526 (562)
                      +..+++|+.|+|++|.|++.  ..+..++  +|++|+|++|.+.+..|       ..+..+++|+.||
T Consensus       192 ~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          192 VQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             HhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            34455555555555555532  1223333  55555555555554333       2344555555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.15  E-value=1.7e-06  Score=80.04  Aligned_cols=68  Identities=26%  Similarity=0.320  Sum_probs=56.9

Q ss_pred             cCcCCCCEEeCcCCcCcc--CcChhccCCCCCCeeeCCCCcccccChhhhcCCC--CCCeEeCcCCcceecCCC
Q 048635          469 GRFKSLYALNMSHNALTG--SIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLN--FLSVLNLSYNNLVGQIPT  538 (562)
Q Consensus       469 ~~l~~L~~L~Ls~n~i~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~--~L~~L~l~~n~l~~~~p~  538 (562)
                      ..+++|++|+|++|.+++  .+|..+..+++|+.|+|++|++++.  +.+..+.  +|++|++++|++++.+|.
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~  238 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRD  238 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCc
Confidence            467899999999999997  4457778999999999999999964  3344454  999999999999987763

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.15  E-value=7.9e-07  Score=76.11  Aligned_cols=85  Identities=9%  Similarity=0.043  Sum_probs=65.1

Q ss_pred             CCcCEEECcCCcccccCCccCCCCCCCCEEEcccCC-CCCcchHHhhcC----CCCCEEEccCcc-cceecCCCCCCCCC
Q 048635          351 CGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNH-ISDNFPCWLRNA----SSLQVLVLRSNN-FSGHISYPRNNVSW  424 (562)
Q Consensus       351 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~l~~n~-l~~~~~~~~~~~~~  424 (562)
                      ..|+.|++++|.+++.....+..+++|++|+|++|. +++.....+..+    ++|++|++++|. ++...  ...+..+
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G--l~~L~~~  138 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG--IIALHHF  138 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH--HHHGGGC
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH--HHHHhcC
Confidence            368889999988887766777889999999999985 777555566654    479999999885 66433  3445678


Q ss_pred             CCCCEEEcCCCcC
Q 048635          425 PLLQIVDFASNKF  437 (562)
Q Consensus       425 ~~L~~L~l~~n~~  437 (562)
                      ++|++|++++|+-
T Consensus       139 ~~L~~L~L~~c~~  151 (176)
T 3e4g_A          139 RNLKYLFLSDLPG  151 (176)
T ss_dssp             TTCCEEEEESCTT
T ss_pred             CCCCEEECCCCCC
Confidence            9999999998863

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.70  E-value=3.1e-05  Score=67.58  Aligned_cols=68  Identities=19%  Similarity=0.150  Sum_probs=37.8

Q ss_pred             ccccCcCCCCEEeCcCCcCccC----cChhccCCCCCCeeeCCCC---cccc----cChhhhcCCCCCCeEeCcCCcce
Q 048635          466 EEMGRFKSLYALNMSHNALTGS----IPSSFGNLKQIESLDLSMN---NLSG----KIPAQLASLNFLSVLNLSYNNLV  533 (562)
Q Consensus       466 ~~l~~l~~L~~L~Ls~n~i~~~----~p~~l~~l~~L~~L~Ls~n---~l~~----~~p~~l~~l~~L~~L~l~~n~l~  533 (562)
                      +.+..-+.|++|+|++|.|.+.    +.+.+..-+.|++|+|++|   .+..    .+.+.+..-+.|++|+++.|.+.
T Consensus        92 ~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A           92 ELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            3344445666666666666533    2334445556777777654   2232    23445556667777777766543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.54  E-value=4.4e-05  Score=66.57  Aligned_cols=44  Identities=7%  Similarity=0.126  Sum_probs=26.1

Q ss_pred             ccccCcCCCCEEeCcCC---cCcc----CcChhccCCCCCCeeeCCCCccc
Q 048635          466 EEMGRFKSLYALNMSHN---ALTG----SIPSSFGNLKQIESLDLSMNNLS  509 (562)
Q Consensus       466 ~~l~~l~~L~~L~Ls~n---~i~~----~~p~~l~~l~~L~~L~Ls~n~l~  509 (562)
                      +.+..-+.|++|+|++|   .+.+    .+.+.+..-+.|+.|+++.|.+.
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            33444566777777754   3332    13345566677888888776543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.03  E-value=0.00098  Score=54.17  Aligned_cols=36  Identities=31%  Similarity=0.304  Sum_probs=17.9

Q ss_pred             CCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcc
Q 048635          497 QIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL  532 (562)
Q Consensus       497 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l  532 (562)
                      +|+.|+|++|+|+...+..|..+++|++|+|++|++
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            355555555555543344444455555555555544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.33  E-value=0.0075  Score=48.85  Aligned_cols=38  Identities=21%  Similarity=0.235  Sum_probs=34.3

Q ss_pred             CCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCccc
Q 048635          472 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS  509 (562)
Q Consensus       472 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~  509 (562)
                      ++|+.|+|++|.|+...+..|..+++|+.|+|++|.+.
T Consensus        31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            47999999999999777778999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	562
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.002
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	8e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 82.1 bits (201), Expect = 8e-18
 Identities = 67/289 (23%), Positives = 108/289 (37%), Gaps = 19/289 (6%)

Query: 253 NTSFSGILPDPIGILKYLTRVDLRSCSFTG--PIPTSTTNLTQLFHVDFSSNHF--SGPI 308
           N ++ G+L D       +  +DL   +     PIP+S  NL  L  +     +       
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 309 PSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVP 368
           P+  +   L+YL ++  N                      +   L  LD S N L G +P
Sbjct: 95  PAIAKLTQLHYLYITHTN------------VSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142

Query: 369 KSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQ 428
            S+++   L  + F  N IS   P    + S L   +  S N       P          
Sbjct: 143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL--A 200

Query: 429 IVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSI 488
            VD + N   G  S    +    +     K        ++G  K+L  L++ +N + G++
Sbjct: 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTL 260

Query: 489 PSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIP 537
           P     LK + SL++S NNL G+IP Q  +L    V   + N  +   P
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 71.7 bits (174), Expect = 2e-14
 Identities = 59/284 (20%), Positives = 104/284 (36%), Gaps = 10/284 (3%)

Query: 255 SFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHES 314
                L +P  +  +L   D  + ++ G +  + T   ++ ++D S  +   P P     
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 315 RNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANC 374
            NL YL  +   + G+ NL               +   LH L ++   + G +P  L+  
Sbjct: 73  ANLPYL--NFLYIGGINNLVGPIPP------AIAKLTQLHYLYITHTNVSGAIPDFLSQI 124

Query: 375 NMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFAS 434
             L  LDF  N +S   P  + +  +L  +    N  SG I          L   +  + 
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI-PDSYGSFSKLFTSMTISR 183

Query: 435 NKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGN 494
           N+  G++    +    + +   ++   +     +                        G 
Sbjct: 184 NRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL 242

Query: 495 LKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPT 538
            K +  LDL  N + G +P  L  L FL  LN+S+NNL G+IP 
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 64.4 bits (155), Expect = 7e-12
 Identities = 60/320 (18%), Positives = 96/320 (30%), Gaps = 43/320 (13%)

Query: 14  PAKMSQWSDSTNCCD--WTGVDCDEAG---HVIGLDLSAEPILIGRLENASGLFSLQYMQ 68
           P  +S W  +T+CC+  W GV CD       V  LDLS          N    + +    
Sbjct: 21  PTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL--------NLPKPYPIPS-- 70

Query: 69  SQFGLANLTNLTYLNLSHC-GFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFN 127
               LANL  L +L +       G IP  I+ L +L  L ++           L      
Sbjct: 71  ---SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT- 126

Query: 128 FFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHS 187
                     L   +   + L      ++S LPNL  +      + G I     +     
Sbjct: 127 ----------LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF 176

Query: 188 QFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQ 247
                                R          +           +L+G       +    
Sbjct: 177 TSMT-------------ISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 248 NLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGP 307
                  +        +G+ K L  +DLR+    G +P   T L  L  ++ S N+  G 
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 308 IPSFHESRNLNYLDLSSNNL 327
           IP     +  +    ++N  
Sbjct: 284 IPQGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.6 bits (88), Expect = 0.002
 Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 8/77 (10%)

Query: 77  TNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELR 136
            NL  L+L +    G +P  ++ L  L +L++S    + G      IP     Q      
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN-LCGE-----IPQGGNLQRFDVSA 297

Query: 137 ELYLDNVDLSGLGTERC 153
             Y +N  L G     C
Sbjct: 298 --YANNKCLCGSPLPAC 312

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 78.9 bits (193), Expect = 2e-16
 Identities = 70/401 (17%), Positives = 122/401 (30%), Gaps = 60/401 (14%)

Query: 131 NLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPIN-HHLANLRSHSQF 189
           +L ++  L  D + +  +       + +L NL  +N S+  L       +L  L      
Sbjct: 42  DLDQVTTLQADRLGIKSI-----DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMN 96

Query: 190 FFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNL 249
                 +       +   L     +           +L+   L   ++ +    S L +L
Sbjct: 97  NNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL 156

Query: 250 NLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIP 309
              +         P+  L  L R+D+ S   +     +   LT L  +  ++N  S   P
Sbjct: 157 QQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA--KLTNLESLIATNNQISDITP 214

Query: 310 SFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPK 369
               + NL+ L L+ N L  +  L                   L  LDL+ NQ+  + P 
Sbjct: 215 LGILT-NLDELSLNGNQLKDIGTLASL--------------TNLTDLDLANNQISNLAP- 258

Query: 370 SLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQI 429
            L+    L  L    N IS+  P     A +              +       +   L  
Sbjct: 259 -LSGLTKLTELKLGANQISNISPLAGLTALTNL------ELNENQLEDISPISNLKNLTY 311

Query: 430 VDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIP 489
           +    N                                +     L  L  ++N ++    
Sbjct: 312 LTLYFNNISD-------------------------ISPVSSLTKLQRLFFANNKVSD--V 344

Query: 490 SSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYN 530
           SS  NL  I  L    N +S   P  LA+L  ++ L L+  
Sbjct: 345 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 77.7 bits (190), Expect = 5e-16
 Identities = 69/352 (19%), Positives = 125/352 (35%), Gaps = 43/352 (12%)

Query: 72  GLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREP--------------ISGF 117
           G+  L NLT +N S+   T   P  + +L +LV + +++ +               ++ F
Sbjct: 61  GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF 118

Query: 118 SWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPIN 177
           + ++   +           EL  + +      +            QV +L     L  + 
Sbjct: 119 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLE 178

Query: 178 HHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSL 237
               +    S    +A L NL +L  +   +    P  I  ++ L+ L L+ N L    +
Sbjct: 179 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQL--KDI 234

Query: 238 PNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHV 297
                 + L +L+LAN   S +   P+  L  LT + L +   +   P +         +
Sbjct: 235 GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISPLAGLTALTNLEL 292

Query: 298 DFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILD 357
           + +       I      +NL YL L  NN++ +  +                   L  L 
Sbjct: 293 NENQLED---ISPISNLKNLTYLTLYFNNISDISPVSSLT--------------KLQRLF 335

Query: 358 LSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSN 409
            + N++      SLAN   +  L   +N ISD  P  L N + +  L L   
Sbjct: 336 FANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 76.2 bits (186), Expect = 2e-15
 Identities = 53/347 (15%), Positives = 111/347 (31%), Gaps = 21/347 (6%)

Query: 193 ANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLA 252
            +L  +T L   +  +  K  + +  ++ L  ++ S N L    +      + L ++ + 
Sbjct: 41  TDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQL--TDITPLKNLTKLVDILMN 96

Query: 253 NTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFH 312
           N   + I P           +     +   P+   T         +  S+  +    +  
Sbjct: 97  NNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL 156

Query: 313 ESRNLNYLDLSSNNLNG--VLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKS 370
           +  +          L     L     + N      +  +   L  L  + NQ+  + P  
Sbjct: 157 QQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG 216

Query: 371 LANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIV 430
                 L  L    N + D     L + ++L  L L +N  S              L  +
Sbjct: 217 --ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS----GLTKLTEL 268

Query: 431 DFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPS 490
              +N+          T L       N+         +   K+L  L +  N ++   P 
Sbjct: 269 KLGANQISNISPLAGLTALTNLELNENQLEDIS---PISNLKNLTYLTLYFNNISDISP- 324

Query: 491 SFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIP 537
              +L +++ L  + N +S    + LA+L  ++ L+  +N +    P
Sbjct: 325 -VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 75.4 bits (184), Expect = 3e-15
 Identities = 62/378 (16%), Positives = 108/378 (28%), Gaps = 59/378 (15%)

Query: 71  FGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQ 130
           F    L       L     T  +    + L ++ TL              LGI + +  +
Sbjct: 16  FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADR----------LGIKSIDGVE 63

Query: 131 NLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANL------- 183
            L  L ++   N  L+ +       L  L  L  + +++  +                  
Sbjct: 64  YLNNLTQINFSNNQLTDI-----TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF 118

Query: 184 -----------RSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPL 232
                         +      +   ++++         +      QV+ L+ L       
Sbjct: 119 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLE 178

Query: 233 LQGSLPNFPKNSYLQN-------LNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIP 285
                 N   +  +         L   N   S I P  I     L  + L          
Sbjct: 179 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--I 234

Query: 286 TSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNL--------GRNN 337
            +  +LT L  +D ++N  S   P       L  L L +N ++ +  L           N
Sbjct: 235 GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELN 293

Query: 338 LNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRN 397
            N             L  L L  N +  + P  +++   LQ L F NN +SD     L N
Sbjct: 294 ENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLAN 349

Query: 398 ASSLQVLVLRSNNFSGHI 415
            +++  L    N  S   
Sbjct: 350 LTNINWLSAGHNQISDLT 367

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 65.8 bits (159), Expect = 3e-12
 Identities = 69/419 (16%), Positives = 128/419 (30%), Gaps = 82/419 (19%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNL 132
             +L  +T L     G        +  L  L  ++ S+ +          + +    +NL
Sbjct: 40  QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQ----------LTDITPLKNL 87

Query: 133 KELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFV 192
            +L ++ ++N  ++ +             L    ++    L  + +      S +    +
Sbjct: 88  TKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI 147

Query: 193 ANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLA 252
           + L  LT+L       +    + +  ++TLE LD+S N      +    K + L++L   
Sbjct: 148 SALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK--VSDISVLAKLTNLESLIAT 205

Query: 253 NTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFH 312
           N   S I P  I     L  + L           +  +LT L  +D ++N  S   P   
Sbjct: 206 NNQISDITPLGIL--TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-LS 260

Query: 313 ESRNLNYLDLSSNNLNGVLNLG--------RNNLNGTLSDIIFPRNCGLHILDLSGNQLQ 364
               L  L L +N ++ +  L           N N             L  L L  N + 
Sbjct: 261 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS 320

Query: 365 GVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSW 424
            + P  +++   LQ L F NN +SD     L N +++  L    N  S            
Sbjct: 321 DISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLT--------- 367

Query: 425 PLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNA 483
                                                      +     +  L ++  A
Sbjct: 368 ------------------------------------------PLANLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 2e-04
 Identities = 35/167 (20%), Positives = 60/167 (35%), Gaps = 33/167 (19%)

Query: 52  IGRLENASGLFSLQYMQSQF----GLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLD 107
           IG L + + L  L    +Q      L+ LT LT L L     +   P    +    + L+
Sbjct: 234 IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELN 293

Query: 108 LSSREPISGFSWRL----------GIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALS 157
            +  E IS  S              I + +   +L +L+ L+  N  +S +      +L+
Sbjct: 294 ENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDV-----SSLA 348

Query: 158 FLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLS 204
            L N+  L+     +                   +ANL  +T L L+
Sbjct: 349 NLTNINWLSAGHNQISDLTP--------------LANLTRITQLGLN 381

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.4 bits (88), Expect = 0.002
 Identities = 20/115 (17%), Positives = 42/115 (36%), Gaps = 7/115 (6%)

Query: 1   MKNSFIFDVDSTPPAKMSQWSDSTNCCDWTGVDCDEAGHVIGLDLSAEPIL-IGRLENAS 59
           +  + I ++            +                ++  L L    I  I  + + +
Sbjct: 270 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLT 329

Query: 60  GLFSLQYMQSQF----GLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSS 110
            L  L +  ++      LANLTN+ +L+  H   +   P  +++L R+  L L+ 
Sbjct: 330 KLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 382

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.4 bits (158), Expect = 3e-12
 Identities = 49/254 (19%), Positives = 80/254 (31%), Gaps = 16/254 (6%)

Query: 197 NLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSF 256
           +   LDL    +          +  L TL L  N + + S   F     L+ L L+    
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 257 SGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRN 316
             +       L+ L   +         +      +  +               +F   + 
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151

Query: 317 LNYLDLSSNNLNGV----------LNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGV 366
           L+Y+ ++  N+  +          L+L  N +    +         L  L LS N +  V
Sbjct: 152 LSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAA-SLKGLNNLAKLGLSFNSISAV 210

Query: 367 VPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFS----GHISYPRNNV 422
              SLAN   L+ L   NN +    P  L +   +QV+ L +NN S         P  N 
Sbjct: 211 DNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT 269

Query: 423 SWPLLQIVDFASNK 436
                  V   SN 
Sbjct: 270 KKASYSGVSLFSNP 283

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.3 bits (155), Expect = 8e-12
 Identities = 42/285 (14%), Positives = 85/285 (29%), Gaps = 25/285 (8%)

Query: 263 PIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIP-SFHESRNLNYLD 321
           P  +      +DL++   T        NL  L  +   +N  S   P +F     L  L 
Sbjct: 26  PKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 85

Query: 322 LSSNNLNGVLN---------LGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQ--GVVPKS 370
           LS N L  +               N    +   +F     + +++L  N L+  G+   +
Sbjct: 86  LSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 145

Query: 371 LANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIV 430
                 L  +   + +I+           SL  L L  N  +       +      L  +
Sbjct: 146 FQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVD--AASLKGLNNLAKL 200

Query: 431 DFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPS 490
             + N      +   + T  +R    N     +    +   K +  + + +N ++    +
Sbjct: 201 GLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSN 260

Query: 491 SF------GNLKQIESLDLSMNNLSGK--IPAQLASLNFLSVLNL 527
            F              + L  N +      P+    +   + + L
Sbjct: 261 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.0 bits (149), Expect = 3e-11
 Identities = 35/193 (18%), Positives = 63/193 (32%), Gaps = 5/193 (2%)

Query: 353 LHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFS 412
             +LDL  N++  +      N   L  L   NN IS   P        L+ L L  N   
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 413 GHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFK 472
                 +   +   L++ +    K    +    +  + +       +            K
Sbjct: 93  ELP--EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 473 SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 532
            L  + ++   +T        +L     L L  N ++    A L  LN L+ L LS+N++
Sbjct: 151 KLSYIRIADTNITTIPQGLPPSL---TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 533 VGQIPTAKHVLPN 545
                 +    P+
Sbjct: 208 SAVDNGSLANTPH 220

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.7 bits (130), Expect = 9e-09
 Identities = 43/292 (14%), Positives = 77/292 (26%), Gaps = 57/292 (19%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNL 132
             NL NL  L L +   +   P                                  F  L
Sbjct: 51  FKNLKNLHTLILINNKISKISP--------------------------------GAFAPL 78

Query: 133 KELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFV 192
            +L  LYL    L  L  +  K L  L                  H     +     F  
Sbjct: 79  VKLERLYLSKNQLKELPEKMPKTLQELR----------------VHENEITKVRKSVFNG 122

Query: 193 ANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLA 252
            N + +  L  +     G        +  L  + ++   +        P    L  L+L 
Sbjct: 123 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS---LTELHLD 179

Query: 253 NTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFH 312
               + +    +  L  L ++ L   S +     S  N   L  +  ++N          
Sbjct: 180 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA 239

Query: 313 ESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQ 364
           + + +  + L +NN++ +        N         +      + L  N +Q
Sbjct: 240 DHKYIQVVYLHNNNISAI------GSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.6 bits (104), Expect = 1e-05
 Identities = 20/61 (32%), Positives = 27/61 (44%)

Query: 472 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNN 531
                L++ +N +T      F NLK + +L L  N +S   P   A L  L  L LS N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 532 L 532
           L
Sbjct: 91  L 91

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (148), Expect = 4e-11
 Identities = 53/303 (17%), Positives = 86/303 (28%), Gaps = 45/303 (14%)

Query: 236 SLPNFPKN--SYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQ 293
            L   P    +  Q + L     S +        + LT + L S         + T L  
Sbjct: 22  GLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81

Query: 294 LFHVDFSSNHFSGPIPS--FHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNC 351
           L  +D S N     +    FH    L+ L L                   L   +F    
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD------------RCGLQELGPGLFRGLA 129

Query: 352 GLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNF 411
            L  L L  N LQ +   +  +   L  L    N IS       R   SL  L+L  N  
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 412 SGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRF 471
           +    +   ++                            M             TE +   
Sbjct: 190 AHVHPHAFRDLGRL-------------------------MTLYLFANNLSALPTEALAPL 224

Query: 472 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNN 531
           ++L  L ++ N       +       ++    S + +   +P +LA      +  L+ N+
Sbjct: 225 RALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAG---RDLKRLAAND 280

Query: 532 LVG 534
           L G
Sbjct: 281 LQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 1e-09
 Identities = 41/289 (14%), Positives = 71/289 (24%), Gaps = 37/289 (12%)

Query: 77  TNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELR 136
                + L     +        +   L             +     +   +         
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTI----------LWLHSNVLARIDAAAFTGLAL 81

Query: 137 ELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLL 196
              LD  D + L +        L  L  L+L  C                        L 
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG------------LQELGPGLFRGLA 129

Query: 197 NLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSF 256
            L  L L    L+    +    +  L  L L  N +       F     L  L L     
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 257 SGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRN 316
           + + P     L  L  + L + + +     +   L  L ++  + N +     +      
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW 249

Query: 317 LNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQG 365
           L     SS+ +                  +  R  G  +  L+ N LQG
Sbjct: 250 LQKFRGSSSEVPCS---------------LPQRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 2e-07
 Identities = 47/292 (16%), Positives = 75/292 (25%), Gaps = 36/292 (12%)

Query: 263 PIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDL 322
           P+GI     R+ L     +     S      L  +   SN  +    +      L     
Sbjct: 27  PVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQL- 85

Query: 323 SSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDF 382
                    +L  N    ++    F     LH L L    LQ + P        LQ L  
Sbjct: 86  ---------DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL 136

Query: 383 RNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLS 442
           ++N +        R+  +L  L L  N  S              L  +    N+      
Sbjct: 137 QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG--LHSLDRLLLHQNRVAHVHP 194

Query: 443 QKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLD 502
                                          L  L +  N L+     +   L+ ++ L 
Sbjct: 195 -----------------------HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231

Query: 503 LSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKHVLPNFNLHRRQLQ 554
           L+ N       A      +L     S + +   +P          L    LQ
Sbjct: 232 LNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQ 282

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (145), Expect = 1e-10
 Identities = 36/268 (13%), Positives = 79/268 (29%), Gaps = 23/268 (8%)

Query: 296 HVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHI 355
            +D +  +    +     S+ +       + ++  L    +                +  
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR-------------VQH 50

Query: 356 LDLSGNQLQGV-VPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGH 414
           +DLS + ++   +   L+ C+ LQ L      +SD     L   S+L  L L   +    
Sbjct: 51  MDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE 110

Query: 415 ISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQ--------ATNKRCRDQATE 466
            +      S   L  ++ +          + +                  N +  D +T 
Sbjct: 111 FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL 170

Query: 467 EMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLS-MNNLSGKIPAQLASLNFLSVL 525
                  ++        L       F  L  ++ L LS   ++  +   +L  +  L  L
Sbjct: 171 VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL 230

Query: 526 NLSYNNLVGQIPTAKHVLPNFNLHRRQL 553
            +      G +   K  LP+  ++    
Sbjct: 231 QVFGIVPDGTLQLLKEALPHLQINCSHF 258

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 6e-04
 Identities = 35/219 (15%), Positives = 67/219 (30%), Gaps = 18/219 (8%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNL 132
           L+  + L  L+L     +  I   ++    LV L+LS     S F+ +          + 
Sbjct: 67  LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ------TLLSSC 120

Query: 133 KELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFV 192
             L EL L           +         +  LNLS        +     +R       +
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 193 ANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQG-SLPNFPKNSYLQNLNL 251
               ++   +    +          Q++ L+ L LS    +   +L    +   L+ L +
Sbjct: 181 DLSDSVMLKNDCFQEF--------FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV 232

Query: 252 ANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTN 290
                 G L     + + L  + +    FT     +  N
Sbjct: 233 FGIVPDGTLQL---LKEALPHLQINCSHFTTIARPTIGN 268

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 9e-10
 Identities = 36/228 (15%), Positives = 69/228 (30%), Gaps = 24/228 (10%)

Query: 307 PIPSFHESRNLNYLDLSSNNLNGV-LNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQG 365
           PI    +  +   ++    NL  +  +L ++                  IL LS N L  
Sbjct: 2   PICEVSKVASHLEVNCDKRNLTALPPDLPKD----------------TTILHLSENLLYT 45

Query: 366 VVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWP 425
               +L     L  L+     ++           +L VL     + +   S P    + P
Sbjct: 46  FSLATLMPYTRLTQLNLDRAELTKLQVDG-----TLPVLGTLDLSHNQLQSLPLLGQTLP 100

Query: 426 LLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYAL-NMSHNAL 484
            L ++D + N+              ++               +          ++++N L
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160

Query: 485 TGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 532
           T         L+ +++L L  N+L   IP      + L    L  N  
Sbjct: 161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 29/180 (16%), Positives = 48/180 (26%), Gaps = 3/180 (1%)

Query: 77  TNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELR 136
            + T L+LS           +    RL  L+L   E          +P            
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG-TLPVLGTLDLSHNQL 89

Query: 137 ELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLL 196
           +            T    + + L +L +  L     L  +     N         +    
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK-GNELKTLPPGLLTPTP 148

Query: 197 NLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSF 256
            L  L L+  +L       +  +  L+TL L  N L       F  +  L    L    +
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP-KGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 4e-04
 Identities = 33/209 (15%), Positives = 55/209 (26%), Gaps = 15/209 (7%)

Query: 129 FQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLR---- 184
              +    E+  D  +L+ L  +         +  +L+LS  LL       L        
Sbjct: 6   VSKVASHLEVNCDKRNLTALPPD------LPKDTTILHLSENLLYTFSLATLMPYTRLTQ 59

Query: 185 ---SHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLP--N 239
                ++   +     L  L              +L  +      L  +     SLP   
Sbjct: 60  LNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 240 FPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDF 299
                 LQ L L       + P  +     L ++ L + + T         L  L  +  
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

Query: 300 SSNHFSGPIPSFHESRNLNYLDLSSNNLN 328
             N        F  S  L +  L  N   
Sbjct: 180 QENSLYTIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 6e-04
 Identities = 29/189 (15%), Positives = 46/189 (24%), Gaps = 15/189 (7%)

Query: 197 NLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSF 256
           + T L LS+  L       ++  + L  L+L         L     +  L  L       
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-----ELTKLQVDGTLPVLGT----- 81

Query: 257 SGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRN 316
                D          +  ++      +  S   LT L             +        
Sbjct: 82  ----LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137

Query: 317 LNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNM 376
                L +           NN    L   +      L  L L  N L   +PK     ++
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHL 196

Query: 377 LQVLDFRNN 385
           L       N
Sbjct: 197 LPFAFLHGN 205

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (124), Expect = 8e-08
 Identities = 57/454 (12%), Positives = 106/454 (23%), Gaps = 33/454 (7%)

Query: 103 LVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTER-CKALSFLPN 161
           + +LD+   E +S   W   +P       L++ + + LD+  L+    +    AL   P 
Sbjct: 4   IQSLDIQCEE-LSDARWAELLPL------LQQCQVVRLDDCGLTEARCKDISSALRVNPA 56

Query: 162 LQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPE------K 215
           L  LNL S  L     H +                 +  L L  C L G          +
Sbjct: 57  LAELNLRSNELGDVGVHCVLQGLQT-------PSCKIQKLSLQNCCLTGAGCGVLSSTLR 109

Query: 216 ILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDL 275
            L       L  +        L           L      +  +       L  + R   
Sbjct: 110 TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKP 169

Query: 276 RSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGR 335
                T           ++       +               +        +       R
Sbjct: 170 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR 229

Query: 336 NNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWL 395
               G+              L    ++L+ +                R     ++     
Sbjct: 230 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELS 289

Query: 396 RNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQA 455
              + L     R    +      +    W        A       +  +    L ++   
Sbjct: 290 LAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN 349

Query: 456 TNKRCRDQATEEMGRFK---SLYALNMSHNALTG----SIPSSFGNLKQIESLDLSMNNL 508
                        G  +    L  L ++   ++     S+ ++      +  LDLS N L
Sbjct: 350 NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 409

Query: 509 SGKIPAQLAS-----LNFLSVLNLSYNNLVGQIP 537
                 QL          L  L L       ++ 
Sbjct: 410 GDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 2e-04
 Identities = 17/95 (17%), Positives = 28/95 (29%), Gaps = 17/95 (17%)

Query: 311 FHESRNLNYLDLSSNNLN--GVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVP 368
                 L  L L+  +++     +L                N  L  LDLS N L     
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAA----------TLLANHSLRELDLSNNCLGDAGI 414

Query: 369 KSLA-----NCNMLQVLDFRNNHISDNFPCWLRNA 398
             L         +L+ L   + + S+     L+  
Sbjct: 415 LQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 4e-04
 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 5/72 (6%)

Query: 473 SLYALNMSHNALTGS-IPSSFGNLKQIESLDLSMNNLSGK----IPAQLASLNFLSVLNL 527
            + +L++    L+ +        L+Q + + L    L+      I + L     L+ LNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 528 SYNNLVGQIPTA 539
             N L       
Sbjct: 63  RSNELGDVGVHC 74

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 54/455 (11%), Positives = 117/455 (25%), Gaps = 36/455 (7%)

Query: 73  LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNL 132
           L  L     + L  CG T     +ISS                              +  
Sbjct: 23  LPLLQQCQVVRLDDCGLTEARCKDISSA----------------------------LRVN 54

Query: 133 KELRELYLDNVDLSGLGTER-CKAL-SFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFF 190
             L EL L + +L  +G     + L +    +Q L+L +C L G     L++        
Sbjct: 55  PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTL 114

Query: 191 FVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLN 250
              +L +    D     L     +   ++  L+    S +      L +  +        
Sbjct: 115 QELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKEL 174

Query: 251 LANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPS 310
             + +        +                      ++ N   L  +  S          
Sbjct: 175 TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 234

Query: 311 FHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKS 370
            ++  ++   +L    L+    L    +           +    +      +   +    
Sbjct: 235 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 294

Query: 371 LANCNMLQVLDFRNNHISDNFPCWLR-NASSLQVLVLRSNNFSGHISYPRNNVSWPLLQI 429
           L +     + +            W++  + +       S+  + +       +S   L+ 
Sbjct: 295 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED 354

Query: 430 VDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIP 489
                   G          L +     +          +    SL  L++S+N L  +  
Sbjct: 355 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI 414

Query: 490 SSFG-----NLKQIESLDLSMNNLSGKIPAQLASL 519
                        +E L L     S ++  +L +L
Sbjct: 415 LQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.1 bits (115), Expect = 7e-07
 Identities = 56/360 (15%), Positives = 108/360 (30%), Gaps = 53/360 (14%)

Query: 197 NLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSF 256
               L+L+   L    PE       LE+L  S N L    LP  P++             
Sbjct: 39  QAHELELNNLGLS-SLPELPPH---LESLVASCNSL--TELPELPQS------------- 79

Query: 257 SGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRN 316
                        L  + + + +       + ++L  L      SN+    +P    S  
Sbjct: 80  -------------LKSLLVDNNNL-----KALSDLPPLLEYLGVSNNQLEKLPELQNSSF 121

Query: 317 LNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNM 376
           L  +D+ +N+L  + +L  +       +        L  L                    
Sbjct: 122 LKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP 181

Query: 377 LQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNK 436
           L +      +        L+N   L  +   +N        P +  +  +         +
Sbjct: 182 LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPE 241

Query: 437 FGGRLSQKCSTTLGMRYQATNKRCR-------DQATEEMGRFKSLYALNMSHNALTGSIP 489
               L+    +       +             ++         SL  LN+S+N L   +P
Sbjct: 242 LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELP 300

Query: 490 SSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKHVLPNFNLH 549
           +    L   E L  S N+L+ ++P    +   L  L++ YN L  + P     + +  ++
Sbjct: 301 ALPPRL---ERLIASFNHLA-EVPELPQN---LKQLHVEYNPLR-EFPDIPESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 2e-05
 Identities = 50/329 (15%), Positives = 98/329 (29%), Gaps = 39/329 (11%)

Query: 222 LETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFT 281
              L+L+   L   SLP  P +  L++L  +  S +  LP+    LK L   +    + +
Sbjct: 40  AHELELNNLGL--SSLPELPPH--LESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALS 94

Query: 282 GPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGT 341
                   +L  L      SN+    +P    S  L  +D+ +N+L  + +L  +     
Sbjct: 95  --------DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIA 146

Query: 342 LSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSL 401
             +        L  L                    L +      +        L+N   L
Sbjct: 147 AGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFL 206

Query: 402 QVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCR 461
             +   +N        P +  +  +         +    L+    +       +      
Sbjct: 207 TTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNL 266

Query: 462 -------DQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLK-----------------Q 497
                  ++         SL  LN+S+N L   +P+    L+                  
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLIASFNHLAEVPELPQN 325

Query: 498 IESLDLSMNNLSGKIPAQLASLNFLSVLN 526
           ++ L +  N L  + P    S+  L + +
Sbjct: 326 LKQLHVEYNPLR-EFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 4e-05
 Identities = 57/331 (17%), Positives = 103/331 (31%), Gaps = 21/331 (6%)

Query: 77  TNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLS----SREPISGFSWRLGIPNFNFFQNL 132
                L L++ G +  +P      P L +L  S    +  P    S +  + + N  + L
Sbjct: 38  RQAHELELNNLGLS-SLP---ELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKAL 93

Query: 133 KELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFV 192
            +L  L L+ + +S    E+   L     L+++++ +  L    +   +     +    +
Sbjct: 94  SDLPPL-LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 193 ANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLA 252
             L  L NL             K L    L    +     +   LP      +L  +   
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 253 NTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFH 312
           N     +   P         V     +    +P S T L    ++    +     +   +
Sbjct: 213 NNLLKTLPDLP--PSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLN 270

Query: 313 ESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLA 372
            S N              LN+  N L    +         L  L  S N L   VP+   
Sbjct: 271 ASSNEIRSLCDLPPSLEELNVSNNKLIELPALP-----PRLERLIASFNHLAE-VPELPQ 324

Query: 373 NCNMLQVLDFRNNHISDNFPCWLRNASSLQV 403
           N   L+ L    N + + FP    +   L++
Sbjct: 325 N---LKQLHVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 24/106 (22%)

Query: 148 LGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCD 207
              E        P+L+ LN+S+  L+                   A    L  L  S   
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLIE----------------LPALPPRLERLIASFNH 315

Query: 208 LRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLAN 253
           L  + PE       L+ L + YNPL     P+ P++  +++L + +
Sbjct: 316 L-AEVPELP---QNLKQLHVEYNPLR--EFPDIPES--VEDLRMNS 353

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.1 bits (113), Expect = 8e-07
 Identities = 28/239 (11%), Positives = 62/239 (25%), Gaps = 30/239 (12%)

Query: 290 NLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPR 349
            L     +    ++ +  + +  +   +  L      +             T+  + +  
Sbjct: 17  ALANAIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVT------------TIEGVQYLN 63

Query: 350 NCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSN 409
           N  L  L+L  NQ+  + P           L                  +        ++
Sbjct: 64  N--LIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD 121

Query: 410 NFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMG 469
                       +   L QI +                 L      +    +      + 
Sbjct: 122 VTPLAGLSNLQVLYLDLNQITNI-----------SPLAGLTNLQYLSIGNAQVSDLTPLA 170

Query: 470 RFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLS 528
               L  L    N ++   P    +L  +  + L  N +S   P  LA+ + L ++ L+
Sbjct: 171 NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 7e-04
 Identities = 29/193 (15%), Positives = 58/193 (30%), Gaps = 5/193 (2%)

Query: 193 ANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLA 252
           A+L  +T L      +     E +  ++ L  L+L  N +   +            L+  
Sbjct: 38  ADLDGITTLSAFGTGV--TTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGN 95

Query: 253 NTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFH 312
                  +     I          +        ++   L    +   + +  +G     +
Sbjct: 96  PLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQY 155

Query: 313 ESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNC-GLHILDLSGNQLQGVVPKSL 371
            S     +   +   N          +  +SDI    +   L  + L  NQ+  V P  L
Sbjct: 156 LSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP--L 213

Query: 372 ANCNMLQVLDFRN 384
           AN + L ++   N
Sbjct: 214 ANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 43/230 (18%), Positives = 67/230 (29%), Gaps = 17/230 (7%)

Query: 71  FGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQ 130
           F    L N   +       T  +    + L  + TL               G+      Q
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGT----------GVTTIEGVQ 60

Query: 131 NLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFF 190
            L  L  L L +  ++ L   +         L    L +   +  +        + +Q  
Sbjct: 61  YLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQIT 120

Query: 191 FVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLN 250
            V  L  L+NL +   DL        L   T      S        L      S L  L 
Sbjct: 121 DVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYL-SIGNAQVSDLTPLANLSKLTTLK 179

Query: 251 LANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFS 300
             +   S I   P+  L  L  V L++   +   P +  N + LF V  +
Sbjct: 180 ADDNKISDI--SPLASLPNLIEVHLKNNQISDVSPLA--NTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 33/199 (16%), Positives = 60/199 (30%), Gaps = 14/199 (7%)

Query: 129 FQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQ 188
             +L  +  L      ++ +     + + +L NL  L L    +       L NL   ++
Sbjct: 37  QADLDGITTLSAFGTGVTTI-----EGVQYLNNLIGLELKDNQI--TDLAPLKNLTKITE 89

Query: 189 FFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQN 248
                N L   +       ++                 LS   +L   L      S L  
Sbjct: 90  LELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAG 149

Query: 249 L----NLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHF 304
           L     L+  +       P+  L  LT +       +   P +  +L  L  V   +N  
Sbjct: 150 LTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLA--SLPNLIEVHLKNNQI 207

Query: 305 SGPIPSFHESRNLNYLDLS 323
           S  +     + NL  + L+
Sbjct: 208 SD-VSPLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 33/207 (15%), Positives = 64/207 (30%), Gaps = 18/207 (8%)

Query: 331 LNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDN 390
           +  G++N+  T++        G+  L   G  +  +  + +   N L  L+ ++N I+D 
Sbjct: 24  IAAGKSNVTDTVTQADLD---GITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDL 78

Query: 391 FPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLG 450
            P                      +S         +  +    +           +   G
Sbjct: 79  APLKNLT-----------KITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAG 127

Query: 451 MRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG 510
           +          +Q T             +S      S  +   NL ++ +L    N +S 
Sbjct: 128 LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD 187

Query: 511 KIPAQLASLNFLSVLNLSYNNLVGQIP 537
             P  LASL  L  ++L  N +    P
Sbjct: 188 ISP--LASLPNLIEVHLKNNQISDVSP 212

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 4e-05
 Identities = 27/186 (14%), Positives = 58/186 (31%), Gaps = 19/186 (10%)

Query: 356 LDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSG-- 413
            +L    +   V ++    N +  +   N+ I       ++   ++  L L  N  +   
Sbjct: 29  DNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIK 84

Query: 414 -----------HISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRD 462
                       +   +      L  +    S           +  + +    +     +
Sbjct: 85  PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNN 144

Query: 463 QATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFL 522
           + T+     +      +S      S       L ++++L LS N++S  + A LA L  L
Sbjct: 145 KITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD-LRA-LAGLKNL 202

Query: 523 SVLNLS 528
            VL L 
Sbjct: 203 DVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 8e-04
 Identities = 26/235 (11%), Positives = 66/235 (28%), Gaps = 32/235 (13%)

Query: 274 DLRSCSFTGPIPTST----TNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNG 329
            L S + T P P           +    +      +  +   +E  +++ +  +++++  
Sbjct: 2   PLGSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQ-NELNSIDQIIANNSDIKS 60

Query: 330 VLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISD 389
           V  +                   +  L L+GN+L  + P +         LD        
Sbjct: 61  VQGIQYLP--------------NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLS 106

Query: 390 NFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTL 449
           +     +             + S   +   +      L  ++               + L
Sbjct: 107 SLKDLKKL-----------KSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRL 155

Query: 450 GMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLS 504
                 + +  +      +     L  L +S N ++     +   LK ++ L+L 
Sbjct: 156 TKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELF 208

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 6e-05
 Identities = 26/219 (11%), Positives = 50/219 (22%), Gaps = 11/219 (5%)

Query: 314 SRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLAN 373
            RN   L      L  +     +         I   +    I     + L  +    +  
Sbjct: 28  PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87

Query: 374 CNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFA 433
            N L  ++        N    L + + ++ L       S          +  +  I    
Sbjct: 88  ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN- 146

Query: 434 SNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFG 493
                   S    +   +         ++         +        +N L       F 
Sbjct: 147 --------SFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFH 198

Query: 494 NLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 532
                  LD+S   +       L +L  L   +    NL
Sbjct: 199 GASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNL 235

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 11/102 (10%)

Query: 298 DFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGL---- 353
             +    +  +    +   + +LDLS N L  +           +          +    
Sbjct: 4   HLAHKDLTV-LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62

Query: 354 -----HILDLSGNQLQGV-VPKSLANCNMLQVLDFRNNHISD 389
                  L L  N+LQ     + L +C  L +L+ + N +  
Sbjct: 63  NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 18/109 (16%), Positives = 31/109 (28%), Gaps = 16/109 (14%)

Query: 72  GLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWR----------- 120
            L  L  +T+L+LSH       P  +++L  L  L  S     +                
Sbjct: 15  HLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDGVANLPRLQELLLC 73

Query: 121 ----LGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVL 165
                         +   L  L L    L      + +    LP++  +
Sbjct: 74  NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 7e-04
 Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 7/112 (6%)

Query: 224 TLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGP 283
            L L++  L    L +  +   + +L+L++     + P  +  L+ L  +     +    
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENV 58

Query: 284 IPTSTTNLTQLFHVDFSSNHFSG--PIPSFHESRNLNYLDLSSNNLNGVLNL 333
              +     Q   +   +N       I        L  L+L  N+L     +
Sbjct: 59  DGVANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.6 bits (93), Expect = 3e-04
 Identities = 31/290 (10%), Positives = 66/290 (22%), Gaps = 29/290 (10%)

Query: 129 FQNLKELRELYLDNVDLSGLGTER-CKALSFLPNLQVLNLSSCLL-------------LG 174
                 ++E+ L    +         + ++   +L++   S                 L 
Sbjct: 27  LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL 86

Query: 175 PINHHLANLRS-----HSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSY 229
                   L +     ++        L       +  +    +   +   +  +      
Sbjct: 87  QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQ 146

Query: 230 NPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTT 289
              +     N P    +        + S            L        +   P      
Sbjct: 147 ELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL 206

Query: 290 NLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGT-----LSD 344
            L  L +               H   +   + L S      L L    L+       +  
Sbjct: 207 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 266

Query: 345 IIFPRNCGLHILDLSGNQLQGVVPKSLA-----NCNMLQVLDFRNNHISD 389
                N GL  L L  N+++    ++L          L  L+   N  S+
Sbjct: 267 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.5 bits (90), Expect = 7e-04
 Identities = 35/307 (11%), Positives = 72/307 (23%), Gaps = 21/307 (6%)

Query: 247 QNLNLANTSFSGI--LPDPIGILKYLTRVDLRSCSFT-------GPIPTSTTNLTQLFHV 297
           ++L L   +      +   +     +  + L   +              S  +L      
Sbjct: 8   KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 298 DFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILD 357
           D  +      IP          L     +   + +                ++  L  L 
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 358 LSGNQLQGVVPK-SLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHIS 416
           L  N L              L V     N          RN      +   +  F  H  
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187

Query: 417 YPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYA 476
                +    ++          G    +    L ++               +  + +L  
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247

Query: 477 LNMSHNALTGSIPS------SFGNLKQIESLDLSMNNLSGKIPAQLAS-----LNFLSVL 525
           L ++   L+    +      S      +++L L  N +       L +     +  L  L
Sbjct: 248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 307

Query: 526 NLSYNNL 532
            L+ N  
Sbjct: 308 ELNGNRF 314

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 30/168 (17%), Positives = 52/168 (30%), Gaps = 16/168 (9%)

Query: 197 NLTNLDLSQ-CDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTS 255
           + T L L+     R        ++  L  L+L  N L       F   S++Q L L    
Sbjct: 30  HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89

Query: 256 FSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESR 315
              I       L  L  ++L     +  +P S  +L  L  ++ +SN F+        + 
Sbjct: 90  IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE 149

Query: 316 NLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQL 363
            L    L+                         +   + I DL  ++ 
Sbjct: 150 WLRKKSLNGGAARC---------------GAPSKVRDVQIKDLPHSEF 182

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 490 SSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 532
           + + N  +   LDL    +   I    A+L+    ++ S N +
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI 53

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	562
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.84
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.82
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.76
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.7
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.66
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.62
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.56
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.52
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.51
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.46
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.46
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.41
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.28
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.28
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.21
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.17
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.39
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.29
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.14
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.03
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.77
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.56

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=5.5e-32  Score=261.41  Aligned_cols=275  Identities=28%  Similarity=0.400  Sum_probs=222.6

Q ss_pred             CCCCCCCCCCCCC--CcceeeeCCC---CCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCC-cc
Q 048635           15 AKMSQWSDSTNCC--DWTGVDCDEA---GHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSH-CG   88 (562)
Q Consensus        15 ~~~~~w~~~~~~c--~w~g~~c~~~---~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~-n~   88 (562)
                      ..++.|..+.|||  .|.||+|+..   .||+.|||+++ .+.+....            |.+|+++++|++|+|++ |+
T Consensus        22 ~~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~-~l~g~~~l------------p~~l~~L~~L~~L~Ls~~N~   88 (313)
T d1ogqa_          22 TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL-NLPKPYPI------------PSSLANLPYLNFLYIGGINN   88 (313)
T ss_dssp             GGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECC-CCSSCEEC------------CGGGGGCTTCSEEEEEEETT
T ss_pred             CcCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCC-CCCCCCCC------------ChHHhcCccccccccccccc
Confidence            5688999888999  4999999865   48999999998 66653211            67899999999999997 78


Q ss_pred             CcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecc
Q 048635           89 FTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLS  168 (562)
Q Consensus        89 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~  168 (562)
                      ++|.+|.+|+++++|++|++++|++        ....+..+.++.+|+++++++|.+....+   ..+..++.|++++++
T Consensus        89 l~g~iP~~i~~L~~L~~L~Ls~N~l--------~~~~~~~~~~~~~L~~l~l~~N~~~~~~p---~~l~~l~~L~~l~l~  157 (313)
T d1ogqa_          89 LVGPIPPAIAKLTQLHYLYITHTNV--------SGAIPDFLSQIKTLVTLDFSYNALSGTLP---PSISSLPNLVGITFD  157 (313)
T ss_dssp             EESCCCGGGGGCTTCSEEEEEEECC--------EEECCGGGGGCTTCCEEECCSSEEESCCC---GGGGGCTTCCEEECC
T ss_pred             cccccccccccccccchhhhccccc--------cccccccccchhhhcccccccccccccCc---hhhccCcccceeecc
Confidence            9989999999999999999999985        35567778899999999999998776544   578889999999999


Q ss_pred             cCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCE
Q 048635          169 SCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQN  248 (562)
Q Consensus       169 ~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~  248 (562)
                      +|.+.+..|..+..+..           .++.+++++|.+++..+..+..+..+ .+++.++.........+..+++++.
T Consensus       158 ~n~l~~~ip~~~~~l~~-----------l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~  225 (313)
T d1ogqa_         158 GNRISGAIPDSYGSFSK-----------LFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQK  225 (313)
T ss_dssp             SSCCEEECCGGGGCCCT-----------TCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSE
T ss_pred             ccccccccccccccccc-----------cccccccccccccccccccccccccc-ccccccccccccccccccccccccc
Confidence            99998887766544322           25889999999998888888776544 6888877643333334556788899


Q ss_pred             EEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCC
Q 048635          249 LNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNN  326 (562)
Q Consensus       249 L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~  326 (562)
                      ++++++.+.+.++ .+..+++|+.|++++|++++.+|..++++++|++|++++|+++|.+|.+..+++|+.+++++|+
T Consensus       226 l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         226 IHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             EECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred             ccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCc
Confidence            9999888876544 5777888999999999998888888888899999999999888877777777777777777775

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=1.6e-27  Score=236.97  Aligned_cols=343  Identities=24%  Similarity=0.292  Sum_probs=205.6

Q ss_pred             CCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCccc
Q 048635           74 ANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERC  153 (562)
Q Consensus        74 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~  153 (562)
                      ..+.+|++|++++++|++ + +.+..+++|++|++++|++.        . + ..++++++|++|++++|.+.+++    
T Consensus        41 ~~l~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~--------~-l-~~l~~L~~L~~L~L~~n~i~~i~----  104 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLT--------D-I-TPLKNLTKLVDILMNNNQIADIT----  104 (384)
T ss_dssp             HHHTTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCC--------C-C-GGGTTCTTCCEEECCSSCCCCCG----
T ss_pred             HHhCCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCC--------C-C-ccccCCccccccccccccccccc----
Confidence            345667777777777763 3 34667777777777777642        1 1 23677777777777777776553    


Q ss_pred             cccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCC
Q 048635          154 KALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLL  233 (562)
Q Consensus       154 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  233 (562)
                       .++.+++|+.|+++++.+.+..+              ......+.......+.+.....................    
T Consensus       105 -~l~~l~~L~~L~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----  165 (384)
T d2omza2         105 -PLANLTNLTGLTLFNNQITDIDP--------------LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV----  165 (384)
T ss_dssp             -GGTTCTTCCEEECCSSCCCCCGG--------------GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESC----
T ss_pred             -ccccccccccccccccccccccc--------------cccccccccccccccccccccccccccccccccccccc----
Confidence             35667777777777666654322              11222344444444433321111111111111111110    


Q ss_pred             CCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCC
Q 048635          234 QGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHE  313 (562)
Q Consensus       234 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  313 (562)
                       ...                        ..+...+.........+...  .......+++++.+++++|.+.+..+ ...
T Consensus       166 -~~~------------------------~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~-~~~  217 (384)
T d2omza2         166 -TDL------------------------KPLANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP-LGI  217 (384)
T ss_dssp             -CCC------------------------GGGTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG-GGG
T ss_pred             -chh------------------------hhhccccccccccccccccc--cccccccccccceeeccCCccCCCCc-ccc
Confidence             011                        11222222333333333222  22234445555555555555554322 344


Q ss_pred             CCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchH
Q 048635          314 SRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPC  393 (562)
Q Consensus       314 ~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  393 (562)
                      .++|++|++++|.++            .++.  +..+++|+.+++++|.+++..  .+..+++|++|+++++++.+..+ 
T Consensus       218 ~~~L~~L~l~~n~l~------------~~~~--l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~~-  280 (384)
T d2omza2         218 LTNLDELSLNGNQLK------------DIGT--LASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISP-  280 (384)
T ss_dssp             CTTCCEEECCSSCCC------------CCGG--GGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGG-
T ss_pred             cCCCCEEECCCCCCC------------Ccch--hhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCCc-
Confidence            556666666666554            2221  455566777777777776433  36677788888888888776433 


Q ss_pred             HhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCC
Q 048635          394 WLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKS  473 (562)
Q Consensus       394 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~  473 (562)
                       +..++.++.+.+..|.+.+    ...+..++++++|++++|++.+.                         ..+..+++
T Consensus       281 -~~~~~~l~~l~~~~n~l~~----~~~~~~~~~l~~L~ls~n~l~~l-------------------------~~l~~l~~  330 (384)
T d2omza2         281 -LAGLTALTNLELNENQLED----ISPISNLKNLTYLTLYFNNISDI-------------------------SPVSSLTK  330 (384)
T ss_dssp             -GTTCTTCSEEECCSSCCSC----CGGGGGCTTCSEEECCSSCCSCC-------------------------GGGGGCTT
T ss_pred             -ccccccccccccccccccc----ccccchhcccCeEECCCCCCCCC-------------------------cccccCCC
Confidence             5677788888888887764    23466778888888888887421                         12677889


Q ss_pred             CCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCC
Q 048635          474 LYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYN  530 (562)
Q Consensus       474 L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n  530 (562)
                      |++|++++|++++ ++ .+.++++|++|++++|++++..|  +.++++|++|+|++|
T Consensus       331 L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         331 LQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            9999999999984 44 58899999999999999996555  888999999999987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=1.6e-26  Score=229.77  Aligned_cols=340  Identities=26%  Similarity=0.329  Sum_probs=207.8

Q ss_pred             CCeEEEECCCCCCcceeecCCCCCcCcccccCccccCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCC
Q 048635           38 GHVIGLDLSAEPILIGRLENASGLFSLQYMQSQFGLANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGF  117 (562)
Q Consensus        38 ~~v~~Ldl~~~~~~~~~~~~~~~l~~l~~L~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~  117 (562)
                      ..+++|+++++ .+.. +               .++..+++|++|++++|++++ +|+ ++++++|++|++++|.+.   
T Consensus        44 ~~l~~L~l~~~-~I~~-l---------------~gl~~L~nL~~L~Ls~N~l~~-l~~-l~~L~~L~~L~L~~n~i~---  101 (384)
T d2omza2          44 DQVTTLQADRL-GIKS-I---------------DGVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIA---  101 (384)
T ss_dssp             TTCCEEECCSS-CCCC-C---------------TTGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC---
T ss_pred             CCCCEEECCCC-CCCC-c---------------cccccCCCCCEEeCcCCcCCC-Ccc-ccCCcccccccccccccc---
Confidence            68999999988 5432 2               357889999999999999995 443 999999999999999853   


Q ss_pred             CccccCCCcccccCCCCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCC
Q 048635          118 SWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLN  197 (562)
Q Consensus       118 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~  197 (562)
                           .  ...++++++|+.|+++++.+++..     .......+.......+.+.........              ..
T Consensus       102 -----~--i~~l~~l~~L~~L~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~~  155 (384)
T d2omza2         102 -----D--ITPLANLTNLTGLTLFNNQITDID-----PLKNLTNLNRLELSSNTISDISALSGL--------------TS  155 (384)
T ss_dssp             -----C--CGGGTTCTTCCEEECCSSCCCCCG-----GGTTCTTCSEEEEEEEEECCCGGGTTC--------------TT
T ss_pred             -----c--cccccccccccccccccccccccc-----ccccccccccccccccccccccccccc--------------cc
Confidence                 2  234889999999999999988764     345566778888777766543322111              11


Q ss_pred             CCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccC
Q 048635          198 LTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRS  277 (562)
Q Consensus       198 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~  277 (562)
                      .+....... .  .....+.............+..  .....+..+++++.+++++|.+++..|  ...+++|++|++++
T Consensus       156 ~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~  228 (384)
T d2omza2         156 LQQLSFGNQ-V--TDLKPLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG  228 (384)
T ss_dssp             CSEEEEEES-C--CCCGGGTTCTTCCEEECCSSCC--CCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCS
T ss_pred             ccccccccc-c--chhhhhcccccccccccccccc--ccccccccccccceeeccCCccCCCCc--ccccCCCCEEECCC
Confidence            111111111 1  1122334444445555544432  223344456667777777776664432  34456666666666


Q ss_pred             CcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEE
Q 048635          278 CSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILD  357 (562)
Q Consensus       278 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~  357 (562)
                      |.+++  ...+..+++|+.+++++|.+.+.. .                                    +..+++|++|+
T Consensus       229 n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~-~------------------------------------~~~~~~L~~L~  269 (384)
T d2omza2         229 NQLKD--IGTLASLTNLTDLDLANNQISNLA-P------------------------------------LSGLTKLTELK  269 (384)
T ss_dssp             SCCCC--CGGGGGCTTCSEEECCSSCCCCCG-G------------------------------------GTTCTTCSEEE
T ss_pred             CCCCC--cchhhcccccchhccccCccCCCC-c------------------------------------ccccccCCEee
Confidence            66653  123455556666666665554322 2                                    33344455555


Q ss_pred             CcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcC
Q 048635          358 LSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKF  437 (562)
Q Consensus       358 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~  437 (562)
                      ++++++++..  .+..++.++.++++.|.+.+.  ..+..+++++.|++++|++.+..    .+..+++|++|++++|++
T Consensus       270 l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~----~l~~l~~L~~L~L~~n~l  341 (384)
T d2omza2         270 LGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS----PVSSLTKLQRLFFANNKV  341 (384)
T ss_dssp             CCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG----GGGGCTTCCEEECCSSCC
T ss_pred             ccCcccCCCC--ccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCc----ccccCCCCCEEECCCCCC
Confidence            5555554321  244555566666666665552  22455666666666666665432    245566666666666665


Q ss_pred             CCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCC
Q 048635          438 GGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMN  506 (562)
Q Consensus       438 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n  506 (562)
                      ++                         ++.+..+++|++|++++|++++..|  +.++++|++|+|++|
T Consensus       342 ~~-------------------------l~~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         342 SD-------------------------VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CC-------------------------CGGGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CC-------------------------ChhHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            21                         1246677888888888888886554  778888888888877

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.95  E-value=1.2e-27  Score=230.55  Aligned_cols=251  Identities=27%  Similarity=0.414  Sum_probs=198.6

Q ss_pred             CCCEEEccCCcCCC--CCCCCCcCCCCCcEEEccC-CcccccCCccCCCCCCCCeeeCcCCcccccCCC-CCCCCCCCEE
Q 048635          245 YLQNLNLANTSFSG--ILPDPIGILKYLTRVDLRS-CSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPS-FHESRNLNYL  320 (562)
Q Consensus       245 ~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L  320 (562)
                      +++.|+++++.+.+  .+|..++.+++|++|++++ |.+++.+|..++++++|++|++++|.+.+..+. +..+..|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            57777777777765  3677888888888888876 678777888888888888888888888775544 4667778888


Q ss_pred             EcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCC-CEEEcccCCCCCcchHHhhcCC
Q 048635          321 DLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNML-QVLDFRNNHISDNFPCWLRNAS  399 (562)
Q Consensus       321 ~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L-~~L~L~~n~l~~~~~~~l~~l~  399 (562)
                      ++++|.+.           +.+|.. +..++.++.+++++|.+.+.+|..+..+..+ +.+++++|++++..+..+..+.
T Consensus       131 ~l~~N~~~-----------~~~p~~-l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~  198 (313)
T d1ogqa_         131 DFSYNALS-----------GTLPPS-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN  198 (313)
T ss_dssp             ECCSSEEE-----------SCCCGG-GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC
T ss_pred             cccccccc-----------ccCchh-hccCcccceeeccccccccccccccccccccccccccccccccccccccccccc
Confidence            88777554           355555 7788888888998888888888888777775 7888888888887777777664


Q ss_pred             CCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeC
Q 048635          400 SLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNM  479 (562)
Q Consensus       400 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L  479 (562)
                      . ..+++.++...+..  +..+..+++++.+++++|.+.+.                        ++.+..+++|+.|++
T Consensus       199 ~-~~l~l~~~~~~~~~--~~~~~~~~~l~~l~~~~~~l~~~------------------------~~~~~~~~~L~~L~L  251 (313)
T d1ogqa_         199 L-AFVDLSRNMLEGDA--SVLFGSDKNTQKIHLAKNSLAFD------------------------LGKVGLSKNLNGLDL  251 (313)
T ss_dssp             C-SEEECCSSEEEECC--GGGCCTTSCCSEEECCSSEECCB------------------------GGGCCCCTTCCEEEC
T ss_pred             c-cccccccccccccc--ccccccccccccccccccccccc------------------------ccccccccccccccC
Confidence            4 47888888877655  77777888899999988887432                        334677789999999


Q ss_pred             cCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCc-ceec
Q 048635          480 SHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNN-LVGQ  535 (562)
Q Consensus       480 s~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~~  535 (562)
                      ++|++++.+|+.|.++++|++|+|++|+++|.+|+ +.++++|+.+++++|+ +.|.
T Consensus       252 s~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             CSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEEST
T ss_pred             ccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCC
Confidence            99999989999999999999999999999988885 5778899999999997 4543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=4.9e-23  Score=197.33  Aligned_cols=67  Identities=21%  Similarity=0.226  Sum_probs=37.6

Q ss_pred             ccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhh------hcCCCCCCeEeCcCCcce
Q 048635          466 EEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQ------LASLNFLSVLNLSYNNLV  533 (562)
Q Consensus       466 ~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~------l~~l~~L~~L~l~~n~l~  533 (562)
                      ..+..+++|++|+|++|.++ .+|.+|..+++|++|+|++|+|+......      ....++|+.|+|++|++.
T Consensus       213 ~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         213 GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             TTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            33445556666666666665 44555666666666666666665322222      233456666666666653

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=5.1e-23  Score=197.16  Aligned_cols=284  Identities=18%  Similarity=0.221  Sum_probs=223.8

Q ss_pred             CCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEcc
Q 048635          197 NLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLR  276 (562)
Q Consensus       197 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~  276 (562)
                      ..+.++-++..++ .+|..+  .+.+++|++++|.+.......|..+++|++|++++|.+....|..|..++.|++|+++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCC-ccCCCC--CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            4778888888888 566665  3689999999998876666678889999999999999998888889999999999999


Q ss_pred             CCcccccCCccCCCCCCCCeeeCcCCcccccCCC-CCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCE
Q 048635          277 SCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPS-FHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHI  355 (562)
Q Consensus       277 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~  355 (562)
                      +|+++. +|..+  .+.++.|++.+|.+.+..+. +.....+..++...+...         .. ......+..+++|+.
T Consensus        88 ~n~l~~-l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~---------~~-~~~~~~~~~l~~L~~  154 (305)
T d1xkua_          88 KNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK---------SS-GIENGAFQGMKKLSY  154 (305)
T ss_dssp             SSCCSB-CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC---------GG-GBCTTGGGGCTTCCE
T ss_pred             CCccCc-Cccch--hhhhhhhhccccchhhhhhhhhhcccccccccccccccc---------cc-CCCccccccccccCc
Confidence            999984 44433  36789999999988764432 355667777887776543         11 222233778889999


Q ss_pred             EECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCC
Q 048635          356 LDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASN  435 (562)
Q Consensus       356 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n  435 (562)
                      +++++|.+.. ++..+  +++|++|++++|......+..+..++.+++|++++|.+.+..  +..+..+++|++|++++|
T Consensus       155 l~l~~n~l~~-l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~--~~~~~~l~~L~~L~L~~N  229 (305)
T d1xkua_         155 IRIADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD--NGSLANTPHLRELHLNNN  229 (305)
T ss_dssp             EECCSSCCCS-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC--TTTGGGSTTCCEEECCSS
T ss_pred             cccccCCccc-cCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccc--cccccccccceeeecccc
Confidence            9999999874 44433  688999999999999888888999999999999999999876  778889999999999999


Q ss_pred             cCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChh------ccCCCCCCeeeCCCCccc
Q 048635          436 KFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSS------FGNLKQIESLDLSMNNLS  509 (562)
Q Consensus       436 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~------l~~l~~L~~L~Ls~n~l~  509 (562)
                      ++                        ..+|.++..+++|++|++++|+|+......      +..+++|+.|+|++|.++
T Consensus       230 ~L------------------------~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         230 KL------------------------VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CC------------------------SSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             cc------------------------cccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            98                        345677889999999999999998543333      346788999999999886


Q ss_pred             --ccChhhhcCCCCCCeE
Q 048635          510 --GKIPAQLASLNFLSVL  525 (562)
Q Consensus       510 --~~~p~~l~~l~~L~~L  525 (562)
                        ...|.+|..+.....+
T Consensus       286 ~~~~~~~~f~~~~~~~~~  303 (305)
T d1xkua_         286 YWEIQPSTFRCVYVRAAV  303 (305)
T ss_dssp             GGGSCGGGGTTCCCGGGE
T ss_pred             cCcCCHhHhcccccCccc
Confidence              3566666655444443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5e-23  Score=194.92  Aligned_cols=250  Identities=20%  Similarity=0.165  Sum_probs=160.6

Q ss_pred             CCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCC-CCCCCCCCEEEcCC-CCCcceEECCCCcCcccCCccc
Q 048635          269 YLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPS-FHESRNLNYLDLSS-NNLNGVLNLGRNNLNGTLSDII  346 (562)
Q Consensus       269 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~-n~l~~~l~l~~~~~~~~~~~~~  346 (562)
                      .+++|++++|.+++..+..+.++++|++|++++|.+....+. +.....++.+.... +.+.            .++...
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~------------~l~~~~  100 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR------------SVDPAT  100 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC------------CCCTTT
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccc------------cccchh
Confidence            455566666665544444555566666666666655543332 24445555554432 2222            344444


Q ss_pred             cCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCC
Q 048635          347 FPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPL  426 (562)
Q Consensus       347 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~  426 (562)
                      |.++++|++|++++|.+....+..+...++|+.+++++|.+++..+..|..+++|++|++++|.+....  +..+..+++
T Consensus       101 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~--~~~f~~l~~  178 (284)
T d1ozna_         101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP--ERAFRGLHS  178 (284)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTT
T ss_pred             hcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccc--hhhhccccc
Confidence            677777777777777776666666777777788888888777766667777777888888888777665  566777778


Q ss_pred             CCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCC
Q 048635          427 LQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMN  506 (562)
Q Consensus       427 L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n  506 (562)
                      |+++++++|+++                       +..|..|..+++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus       179 L~~l~l~~N~l~-----------------------~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         179 LDRLLLHQNRVA-----------------------HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             CCEEECCSSCCC-----------------------EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             cchhhhhhcccc-----------------------ccChhHhhhhhhcccccccccccccccccccccccccCEEEecCC
Confidence            888888877773                       444566777888888888888888777778888888888888888


Q ss_pred             cccccChhhhcCCCCCCeEeCcCCcceecCCCCCCCCccccchHHHHhhhhhcCC
Q 048635          507 NLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKHVLPNFNLHRRQLQAMKLIGS  561 (562)
Q Consensus       507 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~l~~l~~~~~  561 (562)
                      .+...-+.. .-...++.+....+++.+..|...+-.+     ...++.-.+.||
T Consensus       236 ~l~C~C~~~-~l~~~l~~~~~~~~~~~C~~p~~l~g~~-----l~~l~~~~l~gc  284 (284)
T d1ozna_         236 PWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRD-----LKRLAANDLQGC  284 (284)
T ss_dssp             CEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTCB-----GGGSCGGGSCCC
T ss_pred             CCCCCccch-HHHHHHHhCcCCCCceEeCCchHHcCCc-----cccCCHHHCCCc
Confidence            887433211 1112355566666777777776554333     333444455555

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.5e-22  Score=190.08  Aligned_cols=226  Identities=24%  Similarity=0.260  Sum_probs=193.9

Q ss_pred             cEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCC-CCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCC
Q 048635          271 TRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIP-SFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPR  349 (562)
Q Consensus       271 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~  349 (562)
                      ..++.+++.++ .+|..+.  +.+++|++++|.+++..+ .+..++.|++|++++|.+.            .++...+..
T Consensus        14 ~~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~------------~i~~~~~~~   78 (284)
T d1ozna_          14 VTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA------------RIDAAAFTG   78 (284)
T ss_dssp             CEEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC------------EECTTTTTT
T ss_pred             eEEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccc------------ccccccccc
Confidence            34566676666 5565443  578999999999987665 4789999999999999887            556666788


Q ss_pred             CCCcCEEECc-CCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCC
Q 048635          350 NCGLHILDLS-GNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQ  428 (562)
Q Consensus       350 ~~~L~~L~L~-~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~  428 (562)
                      ...++.+... .+.++...+.++.++++|++|++++|.+....+..+..+++|+.+++++|.++...  +..+..+++|+
T Consensus        79 ~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~--~~~f~~~~~L~  156 (284)
T d1ozna_          79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP--DDTFRDLGNLT  156 (284)
T ss_dssp             CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCC
T ss_pred             cccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccC--hhHhccccchh
Confidence            8889998775 56677777889999999999999999998877778888999999999999998765  67788899999


Q ss_pred             EEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcc
Q 048635          429 IVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNL  508 (562)
Q Consensus       429 ~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l  508 (562)
                      +|++++|++.                       +..+..+..+++|+.+++++|++++..|..|..+++|++|++++|++
T Consensus       157 ~L~l~~N~l~-----------------------~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i  213 (284)
T d1ozna_         157 HLFLHGNRIS-----------------------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL  213 (284)
T ss_dssp             EEECCSSCCC-----------------------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             hcccccCccc-----------------------ccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccc
Confidence            9999999983                       34456778899999999999999988899999999999999999999


Q ss_pred             cccChhhhcCCCCCCeEeCcCCcceecC
Q 048635          509 SGKIPAQLASLNFLSVLNLSYNNLVGQI  536 (562)
Q Consensus       509 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~  536 (562)
                      .+..+..+..+++|++|++++|++.+.-
T Consensus       214 ~~~~~~~~~~~~~L~~L~l~~N~l~C~C  241 (284)
T d1ozna_         214 SALPTEALAPLRALQYLRLNDNPWVCDC  241 (284)
T ss_dssp             SCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             ccccccccccccccCEEEecCCCCCCCc
Confidence            9999999999999999999999998653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.5e-21  Score=182.61  Aligned_cols=151  Identities=25%  Similarity=0.206  Sum_probs=75.3

Q ss_pred             CCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCC-CCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCcc
Q 048635          267 LKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIP-SFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDI  345 (562)
Q Consensus       267 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~  345 (562)
                      ...+.+++.+++.++ .+|..+.  +++++|++++|.+++..+ .+..+++|++|++++|.++            .++. 
T Consensus         9 ~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~------------~l~~-   72 (266)
T d1p9ag_           9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT------------KLQV-   72 (266)
T ss_dssp             STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC------------EEEC-
T ss_pred             cCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc------------cccc-
Confidence            334455666666666 3454432  356666666666654332 3455555555555555554            2221 


Q ss_pred             ccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCC
Q 048635          346 IFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWP  425 (562)
Q Consensus       346 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~  425 (562)
                       +..+++|++|++++|+++. .+..+..+++|+.|++++|.+....+..+..++++++|++++|.+....  +..+..++
T Consensus        73 -~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~--~~~~~~l~  148 (266)
T d1p9ag_          73 -DGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP--PGLLTPTP  148 (266)
T ss_dssp             -CSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC--TTTTTTCT
T ss_pred             -ccccccccccccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceec--cccccccc
Confidence             2334455555555555542 3344555555555555555555544444445555555555555554333  33333444


Q ss_pred             CCCEEEcCCCcC
Q 048635          426 LLQIVDFASNKF  437 (562)
Q Consensus       426 ~L~~L~l~~n~~  437 (562)
                      .++.+++++|++
T Consensus       149 ~l~~l~l~~N~l  160 (266)
T d1p9ag_         149 KLEKLSLANNNL  160 (266)
T ss_dssp             TCCEEECTTSCC
T ss_pred             cchhcccccccc
Confidence            444444444444

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.5e-20  Score=175.67  Aligned_cols=198  Identities=21%  Similarity=0.219  Sum_probs=107.6

Q ss_pred             CCccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeC
Q 048635          220 STLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDF  299 (562)
Q Consensus       220 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  299 (562)
                      ..+.+++.+++.+... ++.+.  +.+++|+|++|.+++..+..|..+++|++|++++|.++. ++ .++.+++|++|++
T Consensus        10 ~~~~~v~C~~~~L~~i-P~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTAL-PPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDL   84 (266)
T ss_dssp             TTCCEEECTTSCCSSC-CSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEEC
T ss_pred             CCCeEEEccCCCCCee-CcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccc
Confidence            3444555555554321 11221  356666666666655444555666666666666666652 22 2345566666666


Q ss_pred             cCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCE
Q 048635          300 SSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQV  379 (562)
Q Consensus       300 ~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  379 (562)
                      ++|.+....+.+..+++|+.|++++|.+.            .++...+..+.+++.|++++|.++...+..+..+++++.
T Consensus        85 s~N~l~~~~~~~~~l~~L~~L~l~~~~~~------------~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~  152 (266)
T d1p9ag_          85 SHNQLQSLPLLGQTLPALTVLDVSFNRLT------------SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK  152 (266)
T ss_dssp             CSSCCSSCCCCTTTCTTCCEEECCSSCCC------------CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             ccccccccccccccccccccccccccccc------------eeeccccccccccccccccccccceeccccccccccchh
Confidence            66666555555555566666666555544            333333555555666666666555555555555555666


Q ss_pred             EEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcC
Q 048635          380 LDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKF  437 (562)
Q Consensus       380 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~  437 (562)
                      +++++|++++..+..|..+++|++|+|++|+++.   +|..+..+++|+.|+|++|++
T Consensus       153 l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~---lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLYT---IPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             EECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCCCSEEECCSCCB
T ss_pred             cccccccccccCccccccccccceeecccCCCcc---cChhHCCCCCCCEEEecCCCC
Confidence            6666666655555555555566666666665552   244444555555555555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.84  E-value=6.2e-18  Score=164.86  Aligned_cols=69  Identities=29%  Similarity=0.417  Sum_probs=51.5

Q ss_pred             CcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceecCCCCCCCCcccc
Q 048635          470 RFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIPTAKHVLPNFN  547 (562)
Q Consensus       470 ~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~  547 (562)
                      .+++|++|++++|+++ .+|..   +++|+.|+|++|+|+ .+|+.   +++|++|++++|++. .+|.....+..|.
T Consensus       282 ~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~~~L~~L~  350 (353)
T d1jl5a_         282 LPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIPESVEDLR  350 (353)
T ss_dssp             CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCCTTCCEEE
T ss_pred             cCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCccccccCeeE
Confidence            3578888999988888 56643   578888999999888 56643   467889999999877 7777666565543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.82  E-value=2.7e-17  Score=160.25  Aligned_cols=315  Identities=23%  Similarity=0.267  Sum_probs=169.9

Q ss_pred             CCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCcccccc
Q 048635           77 TNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTERCKAL  156 (562)
Q Consensus        77 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l  156 (562)
                      .++++|||++++++ .+|+.   .++|++|++++|++.         .+|..   ..+|++|++++|+++.++.     +
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~---------~lp~~---~~~L~~L~l~~n~l~~l~~-----l   96 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT---------ELPEL---PQSLKSLLVDNNNLKALSD-----L   96 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS---------SCCCC---CTTCCEEECCSSCCSCCCS-----C
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc---------ccccc---hhhhhhhhhhhcccchhhh-----h
Confidence            47889999999998 57753   568999999998852         33433   4578888888888776542     1


Q ss_pred             CCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCCCCCC
Q 048635          157 SFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPLLQGS  236 (562)
Q Consensus       157 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~  236 (562)
                        .+.|++|++++|.+.... .             .+.+++|++|+++++.+... +.   ....+..+.+..+..  ..
T Consensus        97 --p~~L~~L~L~~n~l~~lp-~-------------~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~--~~  154 (353)
T d1jl5a_          97 --PPLLEYLGVSNNQLEKLP-E-------------LQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQL--EE  154 (353)
T ss_dssp             --CTTCCEEECCSSCCSSCC-C-------------CTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCC--SS
T ss_pred             --cccccccccccccccccc-c-------------hhhhccceeecccccccccc-cc---ccccccchhhccccc--cc
Confidence              135788888877765431 1             34456677777777766522 21   134455555554432  22


Q ss_pred             CCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCC
Q 048635          237 LPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRN  316 (562)
Q Consensus       237 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~  316 (562)
                      ...+..++.++.+++..|..... +.   .....+.+...++.+.                         ..+....++.
T Consensus       155 ~~~l~~l~~l~~L~l~~n~~~~~-~~---~~~~~~~l~~~~~~~~-------------------------~~~~~~~l~~  205 (353)
T d1jl5a_         155 LPELQNLPFLTAIYADNNSLKKL-PD---LPLSLESIVAGNNILE-------------------------ELPELQNLPF  205 (353)
T ss_dssp             CCCCTTCTTCCEEECCSSCCSSC-CC---CCTTCCEEECCSSCCS-------------------------SCCCCTTCTT
T ss_pred             cccccccccceeccccccccccc-cc---cccccccccccccccc-------------------------cccccccccc
Confidence            33344455555555555554321 11   1112233333333322                         2222334444


Q ss_pred             CCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhh
Q 048635          317 LNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLR  396 (562)
Q Consensus       317 L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~  396 (562)
                      |+.+++++|...            .++    ....++..+.+.++.+... +   .....+...++..+.+.+. ..   
T Consensus       206 L~~l~l~~n~~~------------~~~----~~~~~l~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~l-~~---  261 (353)
T d1jl5a_         206 LTTIYADNNLLK------------TLP----DLPPSLEALNVRDNYLTDL-P---ELPQSLTFLDVSENIFSGL-SE---  261 (353)
T ss_dssp             CCEEECCSSCCS------------SCC----SCCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSEE-SC---
T ss_pred             cccccccccccc------------ccc----ccccccccccccccccccc-c---ccccccccccccccccccc-cc---
Confidence            555555444332            111    1122345555555544421 1   1233445555555444331 10   


Q ss_pred             cCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCE
Q 048635          397 NASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYA  476 (562)
Q Consensus       397 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~  476 (562)
                      -.......++..+.+.+..      ..+++|++|++++|++.                        .+|.   .+++|+.
T Consensus       262 l~~~~~~~~~~~~~~~~~~------~~~~~L~~L~Ls~N~l~------------------------~lp~---~~~~L~~  308 (353)
T d1jl5a_         262 LPPNLYYLNASSNEIRSLC------DLPPSLEELNVSNNKLI------------------------ELPA---LPPRLER  308 (353)
T ss_dssp             CCTTCCEEECCSSCCSEEC------CCCTTCCEEECCSSCCS------------------------CCCC---CCTTCCE
T ss_pred             ccchhcccccccCcccccc------ccCCCCCEEECCCCccC------------------------cccc---ccCCCCE
Confidence            0123445555555554332      23466777777777662                        2232   2467888


Q ss_pred             EeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCc
Q 048635          477 LNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLS  528 (562)
Q Consensus       477 L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~  528 (562)
                      |++++|+|+ .+|+.   +++|++|++++|+++ .+|+.   ..+|+.|.+.
T Consensus       309 L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~---~~~L~~L~~~  352 (353)
T d1jl5a_         309 LIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDI---PESVEDLRMN  352 (353)
T ss_dssp             EECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCC---CTTCCEEECC
T ss_pred             EECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCcc---ccccCeeECc
Confidence            888888887 55542   467888888888887 56643   2356666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.4e-21  Score=198.36  Aligned_cols=62  Identities=23%  Similarity=0.134  Sum_probs=28.7

Q ss_pred             CCCCEEeCcCCcCccC----cChhccCCCCCCeeeCCCCcccccChhhh----c-CCCCCCeEeCcCCcce
Q 048635          472 KSLYALNMSHNALTGS----IPSSFGNLKQIESLDLSMNNLSGKIPAQL----A-SLNFLSVLNLSYNNLV  533 (562)
Q Consensus       472 ~~L~~L~Ls~n~i~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l----~-~l~~L~~L~l~~n~l~  533 (562)
                      +.|++|+|++|.|++.    +++.+..+++|++|+|++|++++.....+    . ..+.|+.|++.+|++.
T Consensus       369 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             CCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            3455555555555432    22334444555555555555543222221    1 1224555555555554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=7.2e-18  Score=153.24  Aligned_cols=189  Identities=23%  Similarity=0.322  Sum_probs=120.3

Q ss_pred             CCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCC
Q 048635          289 TNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVP  368 (562)
Q Consensus       289 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  368 (562)
                      +.+.+|++|++.+|.+++. +.+..+++|++|++++|.++            .++.  +..+++++.+++++|.++. + 
T Consensus        38 ~~l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~------------~~~~--l~~l~~l~~l~~~~n~~~~-i-  100 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQIT------------DLAP--LKNLTKITELELSGNPLKN-V-  100 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCC------------CCGG--GTTCCSCCEEECCSCCCSC-C-
T ss_pred             HHcCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCceee------------cccc--ccccccccccccccccccc-c-
Confidence            3445555555555555432 34455555555555555544            1111  4555566666666666653 2 


Q ss_pred             ccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhh
Q 048635          369 KSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTT  448 (562)
Q Consensus       369 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  448 (562)
                      ..+..+++|+.++++++...+..+  +...+.+..+.++++.+...    ..+..+++|++|++++|.+.+         
T Consensus       101 ~~l~~l~~L~~l~l~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~----~~~~~~~~L~~L~l~~n~~~~---------  165 (227)
T d1h6ua2         101 SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNI----SPLAGLTNLQYLSIGNAQVSD---------  165 (227)
T ss_dssp             GGGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCC----GGGGGCTTCCEEECCSSCCCC---------
T ss_pred             ccccccccccccccccccccccch--hccccchhhhhchhhhhchh----hhhcccccccccccccccccc---------
Confidence            245667777777777776665322  44566777777777766532    234566777777777776621         


Q ss_pred             hhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCc
Q 048635          449 LGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLS  528 (562)
Q Consensus       449 ~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~  528 (562)
                                      ...+.++++|++|++++|++++ ++ .++++++|++|+|++|++++..|  ++++++|++|+++
T Consensus       166 ----------------~~~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         166 ----------------LTPLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT  225 (227)
T ss_dssp             ----------------CGGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred             ----------------chhhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEee
Confidence                            1236677888899999888885 33 37888899999999999885433  7888999999886


Q ss_pred             C
Q 048635          529 Y  529 (562)
Q Consensus       529 ~  529 (562)
                      +
T Consensus       226 n  226 (227)
T d1h6ua2         226 N  226 (227)
T ss_dssp             E
T ss_pred             C
Confidence            3

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=2.9e-17  Score=149.17  Aligned_cols=189  Identities=24%  Similarity=0.323  Sum_probs=115.9

Q ss_pred             cCCCCCCCEEecCCccCcccCCccCCCCCCCcEEeCCCCCCCCCCCccccCCCcccccCCCCCCEEEccCccCCCCCCcc
Q 048635           73 LANLTNLTYLNLSHCGFTGEIPTEISSLPRLVTLDLSSREPISGFSWRLGIPNFNFFQNLKELRELYLDNVDLSGLGTER  152 (562)
Q Consensus        73 l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~  152 (562)
                      +..+.+|++|++++|+|+. ++ .+..+++|++|++++|.+.        .  ...+.++++|+++++++|.++.+    
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~--------~--~~~l~~l~~l~~l~~~~n~~~~i----  100 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT--------D--LAPLKNLTKITELELSGNPLKNV----  100 (227)
T ss_dssp             HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC--------C--CGGGTTCCSCCEEECCSCCCSCC----
T ss_pred             HHHcCCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceee--------c--ccccccccccccccccccccccc----
Confidence            4556778888888888874 43 4778888888888888742        1  22377788888888888877665    


Q ss_pred             ccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccCChhhhCCCCccEEeccCCCC
Q 048635          153 CKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKYPEKILQVSTLETLDLSYNPL  232 (562)
Q Consensus       153 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~  232 (562)
                       ..+..+++|+.++++++...+..+              +...+.++.+.++++.+...  ..+..+++|+.|++++|.+
T Consensus       101 -~~l~~l~~L~~l~l~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~  163 (227)
T d1h6ua2         101 -SAIAGLQSIKTLDLTSTQITDVTP--------------LAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQV  163 (227)
T ss_dssp             -GGGTTCTTCCEEECTTSCCCCCGG--------------GTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCC
T ss_pred             -ccccccccccccccccccccccch--------------hccccchhhhhchhhhhchh--hhhcccccccccccccccc
Confidence             356677788888887776544321              33445566777766666522  2345566667776666654


Q ss_pred             CCCCCCCCCCCCCCCEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCc
Q 048635          233 LQGSLPNFPKNSYLQNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFS  300 (562)
Q Consensus       233 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  300 (562)
                      .  ....+..+++|++|++++|.+++.  ..++.+++|++|++++|++++. + .+.++++|+.|+++
T Consensus       164 ~--~~~~l~~l~~L~~L~Ls~n~l~~l--~~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         164 S--DLTPLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLT  225 (227)
T ss_dssp             C--CCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEE
T ss_pred             c--cchhhcccccceecccCCCccCCC--hhhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEee
Confidence            2  223345555666666666655532  2245555566666666555532 2 24555555555554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.3e-19  Score=183.55  Aligned_cols=365  Identities=19%  Similarity=0.177  Sum_probs=223.7

Q ss_pred             CCCCEEEccCccCCCCCCccccccCCCCCCCEEecccCCCCCccchhcccccCCCCcccccCCCCCCEEEccCCcCcccC
Q 048635          133 KELRELYLDNVDLSGLGTERCKALSFLPNLQVLNLSSCLLLGPINHHLANLRSHSQFFFVANLLNLTNLDLSQCDLRGKY  212 (562)
Q Consensus       133 ~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  212 (562)
                      .+|++||++++++++...  .+.+..++++++|++++|.++......++.        .+..+++|++|++++|.++...
T Consensus         2 ~~l~~ld~~~~~i~~~~~--~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~--------~L~~~~~L~~LdLs~N~i~~~~   71 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARW--AELLPLLQQCQVVRLDDCGLTEARCKDISS--------ALRVNPALAELNLRSNELGDVG   71 (460)
T ss_dssp             EEEEEEEEESCCCCHHHH--HHHHHHHTTCSEEEEESSCCCHHHHHHHHH--------HHHTCTTCCEEECTTCCCHHHH
T ss_pred             CCCCEEEeeCCcCChHHH--HHHHHhCCCCCEEEeCCCCCCHHHHHHHHH--------HHhcCCCCCEEECcCCcCChHH
Confidence            367889999998876432  244667888899999999876544333322        2566778999999988886432


Q ss_pred             Chhhh-----CCCCccEEeccCCCCCCCCCC----CCCCCCCCCEEEccCCcCCCCCCCCC-----cCCCCCcEEEccCC
Q 048635          213 PEKIL-----QVSTLETLDLSYNPLLQGSLP----NFPKNSYLQNLNLANTSFSGILPDPI-----GILKYLTRVDLRSC  278 (562)
Q Consensus       213 ~~~l~-----~l~~L~~L~L~~~~~~~~~~~----~~~~~~~L~~L~L~~n~l~~~~~~~~-----~~~~~L~~L~l~~n  278 (562)
                      ...+.     ...+|++|++++|.+......    .+..+++|++|++++|.+.......+     ..............
T Consensus        72 ~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~  151 (460)
T d1z7xw1          72 VHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC  151 (460)
T ss_dssp             HHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             HHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhccccccccccccccccc
Confidence            22222     124688888888876443322    34456778888888777653211111     11122333444333


Q ss_pred             ccccc----CCccCCCCCCCCeeeCcCCcccccCC-----CC-CCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccC
Q 048635          279 SFTGP----IPTSTTNLTQLFHVDFSSNHFSGPIP-----SF-HESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFP  348 (562)
Q Consensus       279 ~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~-----~~-~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~  348 (562)
                      .....    ....+.....++.++++++.......     .+ ........+++..+.+...      ..  ......+.
T Consensus       152 ~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~------~~--~~~~~~l~  223 (460)
T d1z7xw1         152 SLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD------NC--RDLCGIVA  223 (460)
T ss_dssp             CCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT------HH--HHHHHHHH
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccch------hh--hccccccc
Confidence            32211    01122344567777777665432100     00 1223455666666544300      00  00011134


Q ss_pred             CCCCcCEEECcCCcccc-----cCCccCCCCCCCCEEEcccCCCCCcc----hHHhhcCCCCCEEEccCcccceecC--C
Q 048635          349 RNCGLHILDLSGNQLQG-----VVPKSLANCNMLQVLDFRNNHISDNF----PCWLRNASSLQVLVLRSNNFSGHIS--Y  417 (562)
Q Consensus       349 ~~~~L~~L~L~~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~~~--~  417 (562)
                      ..+.++.+++.+|.+..     ...........++.+++++|.+....    ...+...+.++.+++++|.+.....  +
T Consensus       224 ~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l  303 (460)
T d1z7xw1         224 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL  303 (460)
T ss_dssp             HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred             ccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence            45678999999987643     22344556788999999999887532    3345678999999999998863210  0


Q ss_pred             CCC-CCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccC----cChhc
Q 048635          418 PRN-NVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGS----IPSSF  492 (562)
Q Consensus       418 ~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~----~p~~l  492 (562)
                      ... ......|+.+++++|.++.....                   .+...+...++|++|+|++|.+++.    +++.+
T Consensus       304 ~~~l~~~~~~L~~l~l~~~~l~~~~~~-------------------~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l  364 (460)
T d1z7xw1         304 CETLLEPGCQLESLWVKSCSFTAACCS-------------------HFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL  364 (460)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCBGGGHH-------------------HHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHH
T ss_pred             hccccccccccccccccccchhhhhhh-------------------hcccccccccchhhhheeeecccCcccchhhhhh
Confidence            111 12346899999999988533211                   1222345567899999999999754    33344


Q ss_pred             c-CCCCCCeeeCCCCccccc----ChhhhcCCCCCCeEeCcCCccee
Q 048635          493 G-NLKQIESLDLSMNNLSGK----IPAQLASLNFLSVLNLSYNNLVG  534 (562)
Q Consensus       493 ~-~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~  534 (562)
                      . ..+.|++|+|++|++++.    +++.+..+++|++|+|++|+++.
T Consensus       365 ~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             hcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCH
Confidence            3 467899999999999853    45667788999999999999874

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=7e-17  Score=144.41  Aligned_cols=146  Identities=27%  Similarity=0.355  Sum_probs=102.1

Q ss_pred             cCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCC
Q 048635          347 FPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPL  426 (562)
Q Consensus       347 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~  426 (562)
                      +..+++|++|++++|++++..  .+..+++|++|++++|++++ ++ .+..+++|+.|++++|.+..    ...+..++.
T Consensus        64 l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~~----~~~l~~l~~  135 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD----INGLVHLPQ  135 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC----CGGGGGCTT
T ss_pred             HhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccccccccccc----ccccccccc
Confidence            344556677777777666432  34567777777777777766 23 36667777777777776653    234566677


Q ss_pred             CCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCC
Q 048635          427 LQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMN  506 (562)
Q Consensus       427 L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n  506 (562)
                      ++.+++++|.+++                         +..+..+++|+.+++++|++++. + .+.++++|++|++++|
T Consensus       136 l~~l~~~~n~l~~-------------------------~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N  188 (210)
T d1h6ta2         136 LESLYLGNNKITD-------------------------ITVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKN  188 (210)
T ss_dssp             CCEEECCSSCCCC-------------------------CGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSS
T ss_pred             ccccccccccccc-------------------------ccccccccccccccccccccccc-c-cccCCCCCCEEECCCC
Confidence            7777777777632                         22356678889999999988853 3 3788899999999999


Q ss_pred             cccccChhhhcCCCCCCeEeCcC
Q 048635          507 NLSGKIPAQLASLNFLSVLNLSY  529 (562)
Q Consensus       507 ~l~~~~p~~l~~l~~L~~L~l~~  529 (562)
                      ++++ +| .+.++++|++|+|++
T Consensus       189 ~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         189 HISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             CCCC-Ch-hhcCCCCCCEEEccC
Confidence            9884 55 588889999998864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=7.8e-17  Score=142.83  Aligned_cols=142  Identities=30%  Similarity=0.331  Sum_probs=87.7

Q ss_pred             cCCCCCcCEEECcCCcccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCC
Q 048635          347 FPRNCGLHILDLSGNQLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPL  426 (562)
Q Consensus       347 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~  426 (562)
                      +..+++|++|++++|++++..  .+.++++|++|++++|.+....  .+..++.|+.|++++|.....    ..+..+++
T Consensus        58 l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~~~~~~~----~~~~~l~~  129 (199)
T d2omxa2          58 VEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDI----DPLKNLTN  129 (199)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCC----GGGTTCTT
T ss_pred             cccCCCcCcCccccccccCcc--cccCCccccccccccccccccc--ccccccccccccccccccccc----cccchhhh
Confidence            344556666666666665432  2566666777777766665532  255666777777766665532    23445666


Q ss_pred             CCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCC
Q 048635          427 LQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMN  506 (562)
Q Consensus       427 L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n  506 (562)
                      |+.|++++|++.                         ..+.+..+++|++|++++|.+++..  .++++++|++|++++|
T Consensus       130 L~~L~l~~n~l~-------------------------~~~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N  182 (199)
T d2omxa2         130 LNRLELSSNTIS-------------------------DISALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSN  182 (199)
T ss_dssp             CSEEECCSSCCC-------------------------CCGGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSS
T ss_pred             hHHhhhhhhhhc-------------------------ccccccccccccccccccccccCCc--cccCCCCCCEEECCCC
Confidence            677777666652                         1223566677777777777777432  3677777777777777


Q ss_pred             cccccChhhhcCCCCCCeE
Q 048635          507 NLSGKIPAQLASLNFLSVL  525 (562)
Q Consensus       507 ~l~~~~p~~l~~l~~L~~L  525 (562)
                      ++++ ++ .+.++++|++|
T Consensus       183 ~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         183 KVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CCCC-CG-GGGGCTTCSEE
T ss_pred             CCCC-Cc-cccCCCCCCcC
Confidence            7774 33 36677777765

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=6.2e-17  Score=148.67  Aligned_cols=158  Identities=17%  Similarity=0.063  Sum_probs=92.5

Q ss_pred             ccCCCCCcCEEECcC-CcccccCCccCCCCCCCCEEEcccCCCCCcchH-HhhcCCCCCEEEccCcccceecCCCCCCCC
Q 048635          346 IFPRNCGLHILDLSG-NQLQGVVPKSLANCNMLQVLDFRNNHISDNFPC-WLRNASSLQVLVLRSNNFSGHISYPRNNVS  423 (562)
Q Consensus       346 ~~~~~~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~  423 (562)
                      .|.+++.++++.+.. |.+....+..+..+++|+++++++|++....+. .+..+..+..+...++.+....  ...+..
T Consensus        73 ~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~--~~~~~~  150 (242)
T d1xwdc1          73 VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE--RNSFVG  150 (242)
T ss_dssp             SEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEEC--TTSSTT
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhhhccccccccccccccccccccccccccccc--cccccc
Confidence            355555566665543 445555556666677777777777766553221 2333444555555555555443  333443


Q ss_pred             C-CCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEE-eCcCCcCccCcChhccCCCCCCee
Q 048635          424 W-PLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYAL-NMSHNALTGSIPSSFGNLKQIESL  501 (562)
Q Consensus       424 ~-~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L-~Ls~n~i~~~~p~~l~~l~~L~~L  501 (562)
                      + ..++.+++++|+++                        .++......++++++ .+++|.++...+..|.++++|++|
T Consensus       151 ~~~~l~~L~l~~n~l~------------------------~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L  206 (242)
T d1xwdc1         151 LSFESVILWLNKNGIQ------------------------EIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL  206 (242)
T ss_dssp             SBSSCEEEECCSSCCC------------------------EECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEE
T ss_pred             ccccceeeeccccccc------------------------ccccccccchhhhccccccccccccccHHHhcCCCCCCEE
Confidence            3 36777777777763                        122222333444444 466777875445567888888888


Q ss_pred             eCCCCcccccChhhhcCCCCCCeEeCcC
Q 048635          502 DLSMNNLSGKIPAQLASLNFLSVLNLSY  529 (562)
Q Consensus       502 ~Ls~n~l~~~~p~~l~~l~~L~~L~l~~  529 (562)
                      ++++|+++...+..+.++++|+.+++.+
T Consensus       207 ~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         207 DISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             ECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             ECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            8888888855555566666666666544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=4.1e-17  Score=143.76  Aligned_cols=84  Identities=19%  Similarity=0.183  Sum_probs=44.5

Q ss_pred             CcCEEECcCCcccc-cCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEE
Q 048635          352 GLHILDLSGNQLQG-VVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIV  430 (562)
Q Consensus       352 ~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L  430 (562)
                      ++++|+|++|++++ ..+..|..+++|++|++++|.+....+..+..+++|++|++++|++....  +..+..+++|++|
T Consensus        30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~--~~~F~~l~~L~~L  107 (192)
T d1w8aa_          30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS--NKMFLGLHQLKTL  107 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEEC--SSSSTTCTTCCEE
T ss_pred             CCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccC--HHHHhCCCccccc
Confidence            45555555555543 22344455555555555555555555555555555555555555555444  4444445555555


Q ss_pred             EcCCCcC
Q 048635          431 DFASNKF  437 (562)
Q Consensus       431 ~l~~n~~  437 (562)
                      +|++|++
T Consensus       108 ~L~~N~l  114 (192)
T d1w8aa_         108 NLYDNQI  114 (192)
T ss_dssp             ECCSSCC
T ss_pred             ccCCccc
Confidence            5555554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=1.9e-16  Score=141.46  Aligned_cols=165  Identities=20%  Similarity=0.254  Sum_probs=116.1

Q ss_pred             CCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCcc
Q 048635          291 LTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKS  370 (562)
Q Consensus       291 l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  370 (562)
                      +.+|++|++++|.+... +.+..+++|++|++++|.++            .++.  +..+++|+.|++++|++++ ++ .
T Consensus        45 L~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~L~~n~i~------------~l~~--~~~l~~L~~L~l~~n~i~~-l~-~  107 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLT------------DIKP--LANLKNLGWLFLDENKVKD-LS-S  107 (210)
T ss_dssp             HHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCC------------CCGG--GTTCTTCCEEECCSSCCCC-GG-G
T ss_pred             hcCccEEECcCCCCCCc-hhHhhCCCCCEEeCCCcccc------------Cccc--cccCccccccccccccccc-cc-c
Confidence            45666666666666532 33556667777777766655            2332  4566777888888777764 33 4


Q ss_pred             CCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhh
Q 048635          371 LANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLG  450 (562)
Q Consensus       371 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  450 (562)
                      +..+++|+.|++++|.+...  ..+..++.++.+++++|.+.+    ...+..+++|+++++++|++.+           
T Consensus       108 l~~l~~L~~L~l~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~----~~~~~~l~~L~~l~l~~n~l~~-----------  170 (210)
T d1h6ta2         108 LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD----ITVLSRLTKLDTLSLEDNQISD-----------  170 (210)
T ss_dssp             GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC----CGGGGGCTTCSEEECCSSCCCC-----------
T ss_pred             cccccccccccccccccccc--ccccccccccccccccccccc----cccccccccccccccccccccc-----------
Confidence            67788888888888877653  346778888888888888764    3345667888888888888732           


Q ss_pred             hhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCC
Q 048635          451 MRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSM  505 (562)
Q Consensus       451 l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~  505 (562)
                                   + ..+..+++|++|++++|.+++ +| .+.++++|++|+|++
T Consensus       171 -------------i-~~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         171 -------------I-VPLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             -------------C-GGGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             -------------c-ccccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence                         1 236788999999999999984 44 588999999999864

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=2e-16  Score=139.28  Aligned_cols=128  Identities=26%  Similarity=0.275  Sum_probs=64.8

Q ss_pred             CeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCccCCCC
Q 048635          295 FHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKSLANC  374 (562)
Q Consensus       295 ~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l  374 (562)
                      +.++.+++.++..+..+  .+++++|+|++|.++           +.++...|.++++|+.|++++|.+....+..+..+
T Consensus        11 ~~v~Cs~~~L~~iP~~l--p~~l~~L~Ls~N~i~-----------~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~   77 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDI--PLHTTELLLNDNELG-----------RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA   77 (192)
T ss_dssp             TEEECTTSCCSSCCSCC--CTTCSEEECCSCCCC-----------SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred             CEEEEeCCCcCccCCCC--CCCCCEEEeCCCCCc-----------ccccccccCCCceEeeeeccccccccccccccccc
Confidence            34555555554333222  234555555555443           12333334555555555555555555555555555


Q ss_pred             CCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcC
Q 048635          375 NMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKF  437 (562)
Q Consensus       375 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~  437 (562)
                      ++|++|++++|++....+..|.++++|++|+|++|+++...  +..+..+++|+++++++|++
T Consensus        78 ~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~--~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM--PGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEEC--TTSSTTCTTCCEEECTTCCB
T ss_pred             cccceeeeccccccccCHHHHhCCCcccccccCCccccccC--HHHhcCCccccccccccccc
Confidence            55555555555555544445555555555555555555444  44444455555555555544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.7e-16  Score=143.43  Aligned_cols=197  Identities=15%  Similarity=0.076  Sum_probs=89.9

Q ss_pred             CccEEeccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCC-CCCCcCCCCCcEEEccC-CcccccCCccCCCCCCCCeee
Q 048635          221 TLETLDLSYNPLLQGSLPNFPKNSYLQNLNLANTSFSGIL-PDPIGILKYLTRVDLRS-CSFTGPIPTSTTNLTQLFHVD  298 (562)
Q Consensus       221 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~  298 (562)
                      +++.|++++|.+.......|.++++|++|++++|.+...+ +.++..++.++++.+.. +.+....+..+..+++|++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            3444444444433333333444444444444444443221 22344444555544432 334333444445555555555


Q ss_pred             CcCCcccccCC--CCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCC-CcCEEECcCCcccccCCccCCCCC
Q 048635          299 FSSNHFSGPIP--SFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNC-GLHILDLSGNQLQGVVPKSLANCN  375 (562)
Q Consensus       299 l~~n~~~~~~~--~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~l~~l~  375 (562)
                      +++|.+....+  ....+..+..+...++.+.            .++...+.+++ .++.+++++|+++...+..+ ...
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~------------~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~-~~~  176 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH------------TIERNSFVGLSFESVILWLNKNGIQEIHNCAF-NGT  176 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEEEEEESCTTCC------------EECTTSSTTSBSSCEEEECCSSCCCEECTTTT-TTC
T ss_pred             cchhhhcccccccccccccccccccccccccc------------cccccccccccccceeeecccccccccccccc-cch
Confidence            55554442211  0122223333333333332            33332233332 45666676666664444333 334


Q ss_pred             CCCEE-EcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEc
Q 048635          376 MLQVL-DFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDF  432 (562)
Q Consensus       376 ~L~~L-~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l  432 (562)
                      +++++ ++++|+++...+..|.++++|++|++++|+++...  +..+..++.|+.+++
T Consensus       177 ~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~--~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         177 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP--SYGLENLKKLRARST  232 (242)
T ss_dssp             CEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCC--SSSCTTCCEEESSSE
T ss_pred             hhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccC--HHHHcCCcccccCcC
Confidence            44333 45566666654555666777777777777766443  334444444444443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.8e-15  Score=133.81  Aligned_cols=161  Identities=26%  Similarity=0.320  Sum_probs=102.4

Q ss_pred             CCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCcc
Q 048635          291 LTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPKS  370 (562)
Q Consensus       291 l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  370 (562)
                      ++++++|++++|.+.. ...+..+++|++|++++|+++            .++.  +.++++|+.|++++|.+... + .
T Consensus        39 l~~l~~L~l~~~~i~~-l~~l~~l~nL~~L~Ls~N~l~------------~~~~--l~~l~~L~~L~l~~n~~~~~-~-~  101 (199)
T d2omxa2          39 LDQVTTLQADRLGIKS-IDGVEYLNNLTQINFSNNQLT------------DITP--LKNLTKLVDILMNNNQIADI-T-P  101 (199)
T ss_dssp             HTTCCEEECTTSCCCC-CTTGGGCTTCCEEECCSSCCC------------CCGG--GTTCTTCCEEECCSSCCCCC-G-G
T ss_pred             hcCCCEEECCCCCCCC-ccccccCCCcCcCcccccccc------------Cccc--ccCCcccccccccccccccc-c-c
Confidence            4455555555555542 233445566666666666554            2222  55666677777777666532 2 3


Q ss_pred             CCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhh
Q 048635          371 LANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLG  450 (562)
Q Consensus       371 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  450 (562)
                      +.++++|+.|++++|......  .+..+++|+.|++++|.+..    ...+..+++|++|++++|++++           
T Consensus       102 l~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~----~~~l~~~~~L~~L~l~~n~l~~-----------  164 (199)
T d2omxa2         102 LANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISD----ISALSGLTSLQQLNFSSNQVTD-----------  164 (199)
T ss_dssp             GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCC----CGGGTTCTTCSEEECCSSCCCC-----------
T ss_pred             ccccccccccccccccccccc--ccchhhhhHHhhhhhhhhcc----cccccccccccccccccccccC-----------
Confidence            667777777777777766532  35667777777777777653    2345667777888887777632           


Q ss_pred             hhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCee
Q 048635          451 MRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESL  501 (562)
Q Consensus       451 l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L  501 (562)
                                    .+.+.++++|++|++++|++++ ++ .++.+++|++|
T Consensus       165 --------------l~~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         165 --------------LKPLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             --------------CGGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             --------------CccccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence                          1236778889999999998884 33 57788888875

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.3e-17  Score=154.93  Aligned_cols=256  Identities=13%  Similarity=0.176  Sum_probs=154.9

Q ss_pred             CEEEccCCcCCCCCCCCCcCCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccC--CCCCCCCCCCEEEcCC
Q 048635          247 QNLNLANTSFSGILPDPIGILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPI--PSFHESRNLNYLDLSS  324 (562)
Q Consensus       247 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~--~~~~~~~~L~~L~l~~  324 (562)
                      +.+|++++.+.......+.. .....+.+....+... ........+|++|++++|.+....  ..+..+++|++|++++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~-~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQP-LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSC-CCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeeccccccccc-hhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            46788777653211111110 1245566665554422 223334568899999888776421  2246788888888888


Q ss_pred             CCCcceEECCCCcCcccCCccccCCCCCcCEEECcCC-cccccC-CccCCCCCCCCEEEcccCC-CCCcc-hHHhh-cCC
Q 048635          325 NNLNGVLNLGRNNLNGTLSDIIFPRNCGLHILDLSGN-QLQGVV-PKSLANCNMLQVLDFRNNH-ISDNF-PCWLR-NAS  399 (562)
Q Consensus       325 n~l~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~-~~~l~~l~~L~~L~L~~n~-l~~~~-~~~l~-~l~  399 (562)
                      |.++           +..+.. +..+++|++|++++| .+++.. ......+++|++|++++|. +++.. ...+. ..+
T Consensus        81 ~~l~-----------~~~~~~-l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~  148 (284)
T d2astb2          81 LRLS-----------DPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE  148 (284)
T ss_dssp             CBCC-----------HHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCT
T ss_pred             cCCC-----------cHHHHH-HhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccccc
Confidence            8764           223333 566778899998886 454321 1223457888899998874 44322 22233 357


Q ss_pred             CCCEEEccCcc--cceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEE
Q 048635          400 SLQVLVLRSNN--FSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYAL  477 (562)
Q Consensus       400 ~L~~L~l~~n~--l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L  477 (562)
                      .|+.|+++++.  ++.. .+......+++|++|++++|..                      +++..+..+..+++|++|
T Consensus       149 ~L~~L~l~~~~~~i~~~-~l~~l~~~~~~L~~L~L~~~~~----------------------itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         149 TITQLNLSGYRKNLQKS-DLSTLVRRCPNLVHLDLSDSVM----------------------LKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             TCCEEECCSCGGGSCHH-HHHHHHHHCTTCSEEECTTCTT----------------------CCGGGGGGGGGCTTCCEE
T ss_pred             ccchhhhcccccccccc-cccccccccccccccccccccC----------------------CCchhhhhhcccCcCCEE
Confidence            88888888753  3221 1122334578888888888653                      134455667778889999


Q ss_pred             eCcCC-cCccCcChhccCCCCCCeeeCCCCcccc-cChhhhcCCCCCCeEeCcCCcceecCCCCCCCC
Q 048635          478 NMSHN-ALTGSIPSSFGNLKQIESLDLSMNNLSG-KIPAQLASLNFLSVLNLSYNNLVGQIPTAKHVL  543 (562)
Q Consensus       478 ~Ls~n-~i~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~  543 (562)
                      ++++| .+++.....++++++|+.|++++| +++ .++.....+++|+   +..++++...++.....
T Consensus       206 ~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~~~~~  269 (284)
T d2astb2         206 SLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGNK  269 (284)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE---ESCCCSCCTTCSSCSST
T ss_pred             ECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc---ccCccCCCCCCCccCcc
Confidence            99986 577666677888899999999888 443 3333334455554   56667776555444333

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=7.4e-16  Score=144.53  Aligned_cols=61  Identities=21%  Similarity=0.233  Sum_probs=30.2

Q ss_pred             CcCCCCEEeCcCCc-CccCcChhccCCCCCCeeeCCCC-cccccChhhhcCCCCCCeEeCcCC
Q 048635          470 RFKSLYALNMSHNA-LTGSIPSSFGNLKQIESLDLSMN-NLSGKIPAQLASLNFLSVLNLSYN  530 (562)
Q Consensus       470 ~l~~L~~L~Ls~n~-i~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~l~~n  530 (562)
                      .+++|++|++++|. +++..+..+..+++|++|++++| .+++.....+.++++|++|++++|
T Consensus       173 ~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            34555555555542 44444444555555555555553 344444444455555555555554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.52  E-value=2e-15  Score=146.20  Aligned_cols=242  Identities=15%  Similarity=0.145  Sum_probs=148.1

Q ss_pred             cCCCCCcEEEccCCccccc----CCccCCCCCCCCeeeCcCCccccc-----------CCCCCCCCCCCEEEcCCCCCcc
Q 048635          265 GILKYLTRVDLRSCSFTGP----IPTSTTNLTQLFHVDFSSNHFSGP-----------IPSFHESRNLNYLDLSSNNLNG  329 (562)
Q Consensus       265 ~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~-----------~~~~~~~~~L~~L~l~~n~l~~  329 (562)
                      .....+++|++++|.+...    +...+...++|+.++++++.....           ...+..+++|+.|++++|.++.
T Consensus        28 ~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  107 (344)
T d2ca6a1          28 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP  107 (344)
T ss_dssp             HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred             hhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccc
Confidence            3444555555555555321    222344455555665555432211           0112345667777777666541


Q ss_pred             eEECCCCcCcccCCccccCCCCCcCEEECcCCcccccCCc-------------cCCCCCCCCEEEcccCCCCCcc----h
Q 048635          330 VLNLGRNNLNGTLSDIIFPRNCGLHILDLSGNQLQGVVPK-------------SLANCNMLQVLDFRNNHISDNF----P  392 (562)
Q Consensus       330 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-------------~l~~l~~L~~L~L~~n~l~~~~----~  392 (562)
                      .      .. ..+... +...++|++|++++|.+......             .....+.|+.+++++|.+....    .
T Consensus       108 ~------~~-~~l~~~-l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~  179 (344)
T d2ca6a1         108 T------AQ-EPLIDF-LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA  179 (344)
T ss_dssp             T------TH-HHHHHH-HHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred             c------cc-cchhhh-hcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccccccc
Confidence            0      00 011111 34456777888877765422111             1134567889999998887533    3


Q ss_pred             HHhhcCCCCCEEEccCcccceec---CCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCccccccccc
Q 048635          393 CWLRNASSLQVLVLRSNNFSGHI---SYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMG  469 (562)
Q Consensus       393 ~~l~~l~~L~~L~l~~n~l~~~~---~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~  469 (562)
                      ..+..++.|++|++++|.+....   .+...+..+++|+.|++++|.++....                   ..+...+.
T Consensus       180 ~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~-------------------~~L~~~l~  240 (344)
T d2ca6a1         180 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS-------------------SALAIALK  240 (344)
T ss_dssp             HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH-------------------HHHHHHGG
T ss_pred             chhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccc-------------------cccccccc
Confidence            34567889999999999876421   124566778999999999998742211                   12345567


Q ss_pred             CcCCCCEEeCcCCcCccCcCh----hccC--CCCCCeeeCCCCccccc----Chhhhc-CCCCCCeEeCcCCcce
Q 048635          470 RFKSLYALNMSHNALTGSIPS----SFGN--LKQIESLDLSMNNLSGK----IPAQLA-SLNFLSVLNLSYNNLV  533 (562)
Q Consensus       470 ~l~~L~~L~Ls~n~i~~~~p~----~l~~--l~~L~~L~Ls~n~l~~~----~p~~l~-~l~~L~~L~l~~n~l~  533 (562)
                      .+++|++|+|++|.+++....    .+..  .+.|++|++++|+++..    +...+. ++++|++|++++|++.
T Consensus       241 ~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         241 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             ccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            789999999999999855333    3332  46799999999998753    333443 5789999999999986

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.7e-14  Score=120.15  Aligned_cols=128  Identities=15%  Similarity=0.089  Sum_probs=86.1

Q ss_pred             CCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhh
Q 048635          371 LANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLG  450 (562)
Q Consensus       371 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  450 (562)
                      +.++.++++|+|++|+++.. +..+..+++|+.|++++|.+...    +.+..+++|++|++++|+++.           
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l----~~~~~l~~L~~L~ls~N~i~~-----------   77 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL----DGFPLLRRLKTLLVNNNRICR-----------   77 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE----CCCCCCSSCCEEECCSSCCCE-----------
T ss_pred             ccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc----CCcccCcchhhhhcccccccC-----------
Confidence            34555677777777777663 44455677777777777777643    235667777777777777631           


Q ss_pred             hhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcC-hhccCCCCCCeeeCCCCcccccC---hhhhcCCCCCCeEe
Q 048635          451 MRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIP-SSFGNLKQIESLDLSMNNLSGKI---PAQLASLNFLSVLN  526 (562)
Q Consensus       451 l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~---p~~l~~l~~L~~L~  526 (562)
                                  ..+..+..+++|+.|++++|.+.+... ..+..+++|++|++++|.++...   +..+..+++|++||
T Consensus        78 ------------l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          78 ------------IGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             ------------ECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ------------CCccccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence                        112234567888888888888874321 45778888888888888887432   23577788888887

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=2.8e-13  Score=108.86  Aligned_cols=42  Identities=21%  Similarity=0.240  Sum_probs=20.4

Q ss_pred             ccCcCCCCEEeCcCCcCccCc-ChhccCCCCCCeeeCCCCccc
Q 048635          468 MGRFKSLYALNMSHNALTGSI-PSSFGNLKQIESLDLSMNNLS  509 (562)
Q Consensus       468 l~~l~~L~~L~Ls~n~i~~~~-p~~l~~l~~L~~L~Ls~n~l~  509 (562)
                      +..+++|++|++++|++++.. +..+..+++|+.|++++|+++
T Consensus        61 ~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          61 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             cccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            344455555555555554221 133455555555555555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=2.1e-13  Score=109.69  Aligned_cols=104  Identities=25%  Similarity=0.301  Sum_probs=81.5

Q ss_pred             CEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhhhhhhCCCcccccccccCcCCCCEEeCcC
Q 048635          402 QVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSH  481 (562)
Q Consensus       402 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~  481 (562)
                      +.|++++|+++..    ..+..+++|++|++++|++                        ..+|+.+..+++|+.|++++
T Consensus         1 R~L~Ls~n~l~~l----~~l~~l~~L~~L~ls~N~l------------------------~~lp~~~~~l~~L~~L~l~~   52 (124)
T d1dcea3           1 RVLHLAHKDLTVL----CHLEQLLLVTHLDLSHNRL------------------------RALPPALAALRCLEVLQASD   52 (124)
T ss_dssp             SEEECTTSCCSSC----CCGGGGTTCCEEECCSSCC------------------------CCCCGGGGGCTTCCEEECCS
T ss_pred             CEEEcCCCCCCCC----cccccCCCCCEEECCCCcc------------------------Ccchhhhhhhhccccccccc
Confidence            4567777776632    2356677777777777776                        24566688899999999999


Q ss_pred             CcCccCcChhccCCCCCCeeeCCCCcccccC-hhhhcCCCCCCeEeCcCCcceec
Q 048635          482 NALTGSIPSSFGNLKQIESLDLSMNNLSGKI-PAQLASLNFLSVLNLSYNNLVGQ  535 (562)
Q Consensus       482 n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~  535 (562)
                      |.+++ +| .+..+++|++|++++|++++.. +..+..+++|++|++++|+++..
T Consensus        53 N~i~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          53 NALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             SCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             ccccc-cC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcC
Confidence            99994 44 5899999999999999999543 35688999999999999999843

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=8.2e-14  Score=117.99  Aligned_cols=109  Identities=23%  Similarity=0.189  Sum_probs=47.3

Q ss_pred             CCCCCcEEEccCCcccccCCccCCCCCCCCeeeCcCCcccccCCCCCCCCCCCEEEcCCCCCcceEECCCCcCcccCCcc
Q 048635          266 ILKYLTRVDLRSCSFTGPIPTSTTNLTQLFHVDFSSNHFSGPIPSFHESRNLNYLDLSSNNLNGVLNLGRNNLNGTLSDI  345 (562)
Q Consensus       266 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~l~l~~~~~~~~~~~~  345 (562)
                      +...+++|++++|+++. ++..+..+++|+.|++++|.+... +.+..+++|++|++++|.++            .++..
T Consensus        16 n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l-~~~~~l~~L~~L~ls~N~i~------------~l~~~   81 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC------------RIGEG   81 (162)
T ss_dssp             CTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC------------EECSC
T ss_pred             CcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc-CCcccCcchhhhhccccccc------------CCCcc
Confidence            34445555555555542 233334445555555555554422 33344444444444444443            23332


Q ss_pred             ccCCCCCcCEEECcCCcccccC-CccCCCCCCCCEEEcccCCCC
Q 048635          346 IFPRNCGLHILDLSGNQLQGVV-PKSLANCNMLQVLDFRNNHIS  388 (562)
Q Consensus       346 ~~~~~~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~  388 (562)
                      .+..+++|+.|++++|+++... ...+..+++|++|++++|.++
T Consensus        82 ~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          82 LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             HHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             ccccccccccceeccccccccccccccccccccchhhcCCCccc
Confidence            2333444444444444443211 123344444444444444443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.41  E-value=9.9e-15  Score=141.21  Aligned_cols=101  Identities=15%  Similarity=0.140  Sum_probs=48.2

Q ss_pred             cccccCCCCCCEEEccCccCCCCCCc-cccccCCCCCCCEEecccCCCCCcc---chhcccccCCCCcccccCCCCCCEE
Q 048635          126 FNFFQNLKELRELYLDNVDLSGLGTE-RCKALSFLPNLQVLNLSSCLLLGPI---NHHLANLRSHSQFFFVANLLNLTNL  201 (562)
Q Consensus       126 ~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~---~~~~~~l~~~~~~~~l~~l~~L~~L  201 (562)
                      ...+.+...|++|+|++|.+...... ....+...++|+.++++++......   +..+..+     ...+..+++|++|
T Consensus        24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l-----~~~l~~~~~L~~L   98 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL-----LQALLKCPKLHTV   98 (344)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHH-----HHHHTTCTTCCEE
T ss_pred             HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHH-----HHHHhhCCCcccc
Confidence            34456667777777777766443221 1234556667777777665433211   1111111     1123344555556


Q ss_pred             EccCCcCcccCC----hhhhCCCCccEEeccCCC
Q 048635          202 DLSQCDLRGKYP----EKILQVSTLETLDLSYNP  231 (562)
Q Consensus       202 ~l~~~~~~~~~~----~~l~~l~~L~~L~L~~~~  231 (562)
                      ++++|.+.....    ..+...++|++|++++|.
T Consensus        99 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~  132 (344)
T d2ca6a1          99 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG  132 (344)
T ss_dssp             ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             cccccccccccccchhhhhcccccchheeccccc
Confidence            655555543221    222334455555555443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.28  E-value=4.2e-14  Score=124.26  Aligned_cols=130  Identities=20%  Similarity=0.203  Sum_probs=74.6

Q ss_pred             CCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhh
Q 048635          367 VPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCS  446 (562)
Q Consensus       367 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  446 (562)
                      ++..+..+++|++|+|++|+++.. + .+..+++|++|++++|.++..   +.....+++|++|++++|+++.       
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~~i---~~~~~~~~~L~~L~l~~N~i~~-------  107 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKKI---ENLDAVADTLEELWISYNQIAS-------  107 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEECSC---SSHHHHHHHCCEEECSEEECCC-------
T ss_pred             hhhHHhcccccceeECcccCCCCc-c-cccCCccccChhhcccccccc---cccccccccccccccccccccc-------
Confidence            344555666677777777766653 2 355666777777777766532   2222334556666666666521       


Q ss_pred             hhhhhhhhhhhCCCcccccccccCcCCCCEEeCcCCcCccCcC-hhccCCCCCCeeeCCCCcccccChh----------h
Q 048635          447 TTLGMRYQATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIP-SSFGNLKQIESLDLSMNNLSGKIPA----------Q  515 (562)
Q Consensus       447 ~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~----------~  515 (562)
                                        .+.+..+++|+.|++++|.+++... ..+..+++|+.|++++|++....+.          .
T Consensus       108 ------------------l~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~v  169 (198)
T d1m9la_         108 ------------------LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV  169 (198)
T ss_dssp             ------------------HHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHH
T ss_pred             ------------------cccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHH
Confidence                              1224556667777777777663211 3466677777777777766532221          2


Q ss_pred             hcCCCCCCeEe
Q 048635          516 LASLNFLSVLN  526 (562)
Q Consensus       516 l~~l~~L~~L~  526 (562)
                      +..+++|+.||
T Consensus       170 i~~lp~L~~LD  180 (198)
T d1m9la_         170 VKRLPNLKKLD  180 (198)
T ss_dssp             HHHCSSCCEES
T ss_pred             HHHCCCcCEeC
Confidence            45566777665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.28  E-value=9.7e-14  Score=121.89  Aligned_cols=133  Identities=20%  Similarity=0.182  Sum_probs=103.7

Q ss_pred             CCCEEEcccC--CCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEEcCCCcCCCcCChhhhhhhhhhh
Q 048635          376 MLQVLDFRNN--HISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVDFASNKFGGRLSQKCSTTLGMRY  453 (562)
Q Consensus       376 ~L~~L~L~~n--~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~  453 (562)
                      .++.+++.+.  .+. ..+..+..+++|++|++++|.+...    ..+..+++|++|++++|.++               
T Consensus        24 ~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~i----~~l~~l~~L~~L~Ls~N~i~---------------   83 (198)
T d1m9la_          24 EAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKI----SSLSGMENLRILSLGRNLIK---------------   83 (198)
T ss_dssp             TCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESCC----CCHHHHTTCCEEECCEEEEC---------------
T ss_pred             ccceeeeecccCchh-hhhhHHhcccccceeECcccCCCCc----ccccCCccccChhhcccccc---------------
Confidence            3455566554  232 3567899999999999999998743    35788999999999999984               


Q ss_pred             hhhhCCCcccccccccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccCh-hhhcCCCCCCeEeCcCCcc
Q 048635          454 QATNKRCRDQATEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP-AQLASLNFLSVLNLSYNNL  532 (562)
Q Consensus       454 ~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~l~~n~l  532 (562)
                               .++.....+++|++|++++|.++. + ..+..+++|+.|++++|++++... ..+..+++|++|++++|++
T Consensus        84 ---------~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_          84 ---------KIENLDAVADTLEELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             ---------SCSSHHHHHHHCCEEECSEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             ---------cccccccccccccccccccccccc-c-ccccccccccccccccchhccccccccccCCCccceeecCCCcc
Confidence                     233333445789999999999994 4 358899999999999999985322 4689999999999999999


Q ss_pred             eecCCCC
Q 048635          533 VGQIPTA  539 (562)
Q Consensus       533 ~~~~p~~  539 (562)
                      ....+..
T Consensus       153 ~~~~~~~  159 (198)
T d1m9la_         153 YNDYKEN  159 (198)
T ss_dssp             HHHHCTT
T ss_pred             ccCcccc
Confidence            8665543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=4.2e-11  Score=100.25  Aligned_cols=94  Identities=18%  Similarity=0.109  Sum_probs=63.0

Q ss_pred             cCCccccCCCCCcCEEECcCC-cccccCCccCCCCCCCCEEEcccCCCCCcchHHhhcCCCCCEEEccCcccceecCCCC
Q 048635          341 TLSDIIFPRNCGLHILDLSGN-QLQGVVPKSLANCNMLQVLDFRNNHISDNFPCWLRNASSLQVLVLRSNNFSGHISYPR  419 (562)
Q Consensus       341 ~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  419 (562)
                      .+|.. +.++++|++|++++| .++...+.+|.++++|+.|+|++|+++.+.+..|..+++|++|+|++|+++..   +.
T Consensus        22 ~~p~~-l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l---~~   97 (156)
T d2ifga3          22 DSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL---SW   97 (156)
T ss_dssp             TTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCC---CS
T ss_pred             cCccc-ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCccc---Ch
Confidence            34444 556667777777655 46656666777777777777777777776677777777777777777777643   33


Q ss_pred             CCCCCCCCCEEEcCCCcCC
Q 048635          420 NNVSWPLLQIVDFASNKFG  438 (562)
Q Consensus       420 ~~~~~~~L~~L~l~~n~~~  438 (562)
                      .......|+.|++++|++.
T Consensus        98 ~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          98 KTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             TTTCSCCCCEEECCSSCCC
T ss_pred             hhhccccccccccCCCccc
Confidence            3333446777777777763

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=7.5e-11  Score=98.67  Aligned_cols=82  Identities=17%  Similarity=0.078  Sum_probs=54.7

Q ss_pred             cCEEECcCCcccccCCccCCCCCCCCEEEcccC-CCCCcchHHhhcCCCCCEEEccCcccceecCCCCCCCCCCCCCEEE
Q 048635          353 LHILDLSGNQLQGVVPKSLANCNMLQVLDFRNN-HISDNFPCWLRNASSLQVLVLRSNNFSGHISYPRNNVSWPLLQIVD  431 (562)
Q Consensus       353 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~  431 (562)
                      .+.++.+++.+. ..|..+..+++|++|++++| .++...+..|.++++|+.|++++|+++.+.  +..+..+++|++|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~--~~~f~~l~~L~~L~   86 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA--PDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC--TTGGGSCSCCCEEE
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcc--ccccccccccccee
Confidence            456777777766 45666777778888888665 476666667777788888888888777554  44455555555555


Q ss_pred             cCCCcC
Q 048635          432 FASNKF  437 (562)
Q Consensus       432 l~~n~~  437 (562)
                      |++|++
T Consensus        87 Ls~N~l   92 (156)
T d2ifga3          87 LSFNAL   92 (156)
T ss_dssp             CCSSCC
T ss_pred             ccCCCC
Confidence            555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=2.3e-08  Score=83.78  Aligned_cols=60  Identities=25%  Similarity=0.128  Sum_probs=39.2

Q ss_pred             cccCcCCCCEEeCcCCcCccCcChhccCCCCCCeeeCCCCcccccCh-------hhhcCCCCCCeEe
Q 048635          467 EMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP-------AQLASLNFLSVLN  526 (562)
Q Consensus       467 ~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-------~~l~~l~~L~~L~  526 (562)
                      .+..+++|+.|++++|.|+...+-.+.....|+.|++++|.++....       ..+..+|+|+.||
T Consensus        86 ~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          86 IVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             HHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            34566777777888877774333233445567888888888765432       2356678888776

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1e-08  Score=86.08  Aligned_cols=70  Identities=24%  Similarity=0.150  Sum_probs=56.3

Q ss_pred             ccCcCCCCEEeCcCCcCccCc--ChhccCCCCCCeeeCCCCcccccChhhhcCCCCCCeEeCcCCcceecCC
Q 048635          468 MGRFKSLYALNMSHNALTGSI--PSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGQIP  537 (562)
Q Consensus       468 l~~l~~L~~L~Ls~n~i~~~~--p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p  537 (562)
                      ...+++|++|+|++|+|+...  +..+..+++|+.|+|++|+++...+.......+|++|++++|++.....
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSS
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcc
Confidence            456899999999999998543  4567889999999999999996444344455689999999999986554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.14  E-value=1.3e-06  Score=73.16  Aligned_cols=65  Identities=18%  Similarity=0.137  Sum_probs=35.3

Q ss_pred             ccCcCCCCEEeCcCCcCccC----cChhccCCCCCCeeeCCCCcccc-------cChhhhcCCCCCCeEeCcCCcc
Q 048635          468 MGRFKSLYALNMSHNALTGS----IPSSFGNLKQIESLDLSMNNLSG-------KIPAQLASLNFLSVLNLSYNNL  532 (562)
Q Consensus       468 l~~l~~L~~L~Ls~n~i~~~----~p~~l~~l~~L~~L~Ls~n~l~~-------~~p~~l~~l~~L~~L~l~~n~l  532 (562)
                      +...+.|++|+|++|.+++.    +...+...++|++|++++|++..       .+...+...++|++|+++++..
T Consensus        68 L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          68 IETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             hhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            34445566666666665532    22334555666666666664432       1334455567777777766543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.03  E-value=2e-06  Score=72.04  Aligned_cols=43  Identities=5%  Similarity=0.050  Sum_probs=26.4

Q ss_pred             ccccCcCCCCEEeCcCCcCccC-------cChhccCCCCCCeeeCCCCcc
Q 048635          466 EEMGRFKSLYALNMSHNALTGS-------IPSSFGNLKQIESLDLSMNNL  508 (562)
Q Consensus       466 ~~l~~l~~L~~L~Ls~n~i~~~-------~p~~l~~l~~L~~L~Ls~n~l  508 (562)
                      ..+...++|++|++++|.+...       +...+...++|+.|+++.+..
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            3455556777777777754421       334455667788887776654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.77  E-value=9.5e-06  Score=67.68  Aligned_cols=65  Identities=17%  Similarity=0.249  Sum_probs=37.4

Q ss_pred             ccCcCCCCEEeCcCCcCccC----cChhccCCCCCCeeeC--CCCcccc----cChhhhcCCCCCCeEeCcCCcc
Q 048635          468 MGRFKSLYALNMSHNALTGS----IPSSFGNLKQIESLDL--SMNNLSG----KIPAQLASLNFLSVLNLSYNNL  532 (562)
Q Consensus       468 l~~l~~L~~L~Ls~n~i~~~----~p~~l~~l~~L~~L~L--s~n~l~~----~~p~~l~~l~~L~~L~l~~n~l  532 (562)
                      +...++++.+++++|.+++.    +...+...++|+.++|  ++|++..    .+.+.+...+.|++|+++.++.
T Consensus        70 l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          70 LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            34455666666666666532    2244556666766444  3455543    3444556677777777776644

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.56  E-value=1.7e-05  Score=66.10  Aligned_cols=45  Identities=13%  Similarity=0.191  Sum_probs=27.9

Q ss_pred             cccccCcCCCCEEeC--cCCcCcc----CcChhccCCCCCCeeeCCCCccc
Q 048635          465 TEEMGRFKSLYALNM--SHNALTG----SIPSSFGNLKQIESLDLSMNNLS  509 (562)
Q Consensus       465 ~~~l~~l~~L~~L~L--s~n~i~~----~~p~~l~~l~~L~~L~Ls~n~l~  509 (562)
                      ...+...++|++++|  ++|.+.+    .+.+.+...+.|+.|+++.+...
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCCc
Confidence            344556677776555  4555653    24455667788888888776543