Citrus Sinensis ID: 048637

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110------
Protein Sequence
MDISDTETLMLQRQDTVDDCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFMSW
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHHccccccccccccccEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MDISDTETLMLQRQdtvddcvdyrgrpvhransggwkSALFIIGVEMAERFAfcgtgsnlityltgplgqstATAAQnankwsgtsqllpllgafvgdsfLGRYQTIFLLLLFMSW
Flexible Loop (DISEMBL)
mdisdtetlmlqrqdtvddcvdyrgrpvhransggwkSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFMSW
Low Complexity Region (SEG)
MDISDTETLMLQRQDTVDDCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFMSW
Disordered region (IsUnstruct)
***************TVDDCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM**
Disordered Region (DISOPRED)
*******************CVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFMSW
Disordered Region (DISEMBL)
MDISDTETLMLQRQDTVDDCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFMSW
Disordered Region (DISPRO)
**************DTVDDCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFMSW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDISDTETLMLQRQDTVDDCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFMSW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	116	2.2.26 [Sep-21-2011]
Q9SK96	564	Probable peptide/nitrate	yes	no	0.905	0.186	0.607	7e-34
Q9SK99	565	Probable peptide/nitrate	no	no	0.922	0.189	0.605	3e-33
Q8VZE2	557	Probable peptide/nitrate	no	no	0.913	0.190	0.607	4e-29
Q0WP01	557	Probable peptide/nitrate	no	no	0.75	0.156	0.735	9e-29
Q0WSZ6	561	Probable peptide/nitrate	no	no	0.836	0.172	0.639	1e-26
Q9C7U1	555	Probable peptide/nitrate	no	no	0.931	0.194	0.5	2e-24
Q9M1I2	555	Probable peptide/nitrate	no	no	0.706	0.147	0.609	4e-24
P0CI03	575	Putative peptide/nitrate	no	no	0.905	0.182	0.438	8e-23
Q9M331	602	Probable peptide/nitrate	no	no	0.905	0.174	0.438	3e-22
Q8RX67	538	Probable peptide/nitrate	no	no	0.706	0.152	0.621	1e-20

>sp|Q9SK96|PTR10_ARATH Probable peptide/nitrate transporter At1g22550 OS=Arabidopsis thaliana GN=At1g22550 PE=2 SV=1

 Score =  142 bits (358), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 65/107 (60%), Positives = 87/107 (81%), Gaps = 2/107 (1%)

Query: 1   MDISDTETLMLQRQDTVDDCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNL 60
           M I++ E  +++  D+V D VD+RG P  ++++GGW+SA +IIGVE+ ERFA+ G GSNL
Sbjct: 1   MAIAEEEAALIE--DSVSDSVDHRGLPAGKSSTGGWRSAWYIIGVEVGERFAYFGIGSNL 58

Query: 61  ITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTI 107
           ITYLTGPLGQSTATAA N N WSGT+ +LP+LGAF+ D++LGRY+TI
Sbjct: 59  ITYLTGPLGQSTATAAVNVNTWSGTASILPVLGAFIADAYLGRYRTI 105

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK99|PTR11_ARATH Probable peptide/nitrate transporter At1g22570 OS=Arabidopsis thaliana GN=At1g22570 PE=2 SV=1

 Score =  140 bits (353), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 66/109 (60%), Positives = 84/109 (77%), Gaps = 2/109 (1%)

Query: 1   MDISDTETLMLQRQDTVDDCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNL 60
           M I + E  +L+  D V D VD+RG P  ++++GGW+SA FIIGVE+AERFA+ G   NL
Sbjct: 1   MKIPEEEVALLE--DYVSDSVDHRGFPAGKSSTGGWRSAWFIIGVEVAERFAYFGIACNL 58

Query: 61  ITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFL 109
           ITYLTGPLGQSTA AA N N WSGT+ +LP+LGAFV D++LGRY+TI +
Sbjct: 59  ITYLTGPLGQSTAKAAVNVNTWSGTASILPILGAFVADAYLGRYRTIVV 107

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZE2|PTR22_ARATH Probable peptide/nitrate transporter At1g72120 OS=Arabidopsis thaliana GN=At1g72120 PE=2 SV=2

 Score =  126 bits (317), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 65/107 (60%), Positives = 84/107 (78%), Gaps = 1/107 (0%)

Query: 3   ISDTETLMLQRQDTVDDCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLIT 62
           ++ T  + LQ ++ V D VD+RG    R+N+G W++ALFIIGVE+AERFA+ G GSNLI+
Sbjct: 1   MTTTSEISLQ-EEYVTDAVDHRGLAARRSNTGRWRAALFIIGVEVAERFAYYGIGSNLIS 59

Query: 63  YLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFL 109
           YLTGPLG+STA AA N N WSG + LLP+LGAFV D+FLGRY+TI +
Sbjct: 60  YLTGPLGESTAVAAANVNAWSGIATLLPVLGAFVADAFLGRYRTIII 106

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WP01|PTR9_ARATH Probable peptide/nitrate transporter At1g22540 OS=Arabidopsis thaliana GN=At1g22540 PE=2 SV=1

 Score =  125 bits (313), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 64/87 (73%), Positives = 74/87 (85%)

Query: 21  VDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNAN 80
           VDYR +P  +++SGGW+SA FIIGVE+AERFA+ G  SNLITYLTGPLGQSTA AA N N
Sbjct: 19  VDYRNKPAVKSSSGGWRSAGFIIGVEVAERFAYYGISSNLITYLTGPLGQSTAAAAANVN 78

Query: 81  KWSGTSQLLPLLGAFVGDSFLGRYQTI 107
            WSGT+ LLPLLGAFV DSFLGR++TI
Sbjct: 79  AWSGTASLLPLLGAFVADSFLGRFRTI 105

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WSZ6|PTR23_ARATH Probable peptide/nitrate transporter At1g72125 OS=Arabidopsis thaliana GN=At1g72125 PE=2 SV=2

 Score =  117 bits (294), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 62/97 (63%), Positives = 75/97 (77%)

Query: 13  RQDTVDDCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQST 72
           +++ V D VD+RG    R+ +G W++A FIIGVE+AERFA  G GSNLI+YLTGPLGQST
Sbjct: 10  QEEYVIDAVDHRGFSARRSITGRWRAAWFIIGVEVAERFANYGIGSNLISYLTGPLGQST 69

Query: 73  ATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFL 109
           A AA N N WSG S +LPLLGAFV D+FLGRY TI +
Sbjct: 70  AVAAANVNAWSGISTILPLLGAFVADAFLGRYITIII 106

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7U1|PTR25_ARATH Probable peptide/nitrate transporter At1g72140 OS=Arabidopsis thaliana GN=At1g72140 PE=2 SV=1

 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/108 (50%), Positives = 71/108 (65%)

Query: 2   DISDTETLMLQRQDTVDDCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLI 61
            I D ET  +   + V+  VD+RG P  R++SG WKS+ F +  E+AE+FA+ G  SNLI
Sbjct: 4   SIGDNETGAIVSNENVEFSVDFRGNPSIRSSSGAWKSSGFTMCAEVAEKFAYFGIASNLI 63

Query: 62  TYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFL 109
           TY T  LG+STA AA N N W GT+  LPL+   + DSFLGR++TI L
Sbjct: 64  TYFTEALGESTAVAASNVNLWLGTAAFLPLIWGSIADSFLGRFRTILL 111

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1I2|PTR46_ARATH Probable peptide/nitrate transporter At3g54450 OS=Arabidopsis thaliana GN=At3g54450 PE=2 SV=1

 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 50/82 (60%), Positives = 63/82 (76%)

Query: 28  VHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQ 87
           +++   GGW +ALFII VE+AERFAF G  SNLIT+LT  LGQSTATAA+N N W G S 
Sbjct: 8   INKRTKGGWNAALFIIVVEIAERFAFYGLASNLITFLTNELGQSTATAAKNINTWIGVSC 67

Query: 88  LLPLLGAFVGDSFLGRYQTIFL 109
           + P+LGAF+ DS LGR++T+ L
Sbjct: 68  MFPILGAFLADSILGRFKTVLL 89

Arabidopsis thaliana (taxid: 3702)

>sp|P0CI03|PTR28_ARATH Putative peptide/nitrate transporter At2g37900 OS=Arabidopsis thaliana GN=At2g37900 PE=2 SV=1

 Score =  105 bits (262), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 50/114 (43%), Positives = 71/114 (62%), Gaps = 9/114 (7%)

Query: 12  QRQDTVDDCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQS 71
           Q++  +D  +D RGR   RA +G W++ALFII +E +ER ++ G  +NL+ YLT  L Q 
Sbjct: 18  QQKWVLDSSLDSRGRVPLRARTGAWRAALFIIAIEFSERLSYFGLATNLVVYLTTILNQD 77

Query: 72  TATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIF---------LLLLFMSW 116
              A +N N WSG + L+PLLG F+ D++LGRY T+          L+LL MSW
Sbjct: 78  LKMAIRNVNYWSGVTTLMPLLGGFIADAYLGRYATVLVATTIYLMGLVLLTMSW 131

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M331|PTR45_ARATH Probable peptide/nitrate transporter At3g53960 OS=Arabidopsis thaliana GN=At3g53960 PE=2 SV=2

 Score =  103 bits (258), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 50/114 (43%), Positives = 70/114 (61%), Gaps = 9/114 (7%)

Query: 12  QRQDTVDDCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQS 71
           Q++  +D   D RG    RA +G W++ALFIIG+E +ER ++ G  +NL+ YLT  L Q 
Sbjct: 17  QQKWVLDSSTDSRGEIPLRAQTGAWRAALFIIGIEFSERLSYFGISTNLVVYLTTILHQD 76

Query: 72  TATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIF---------LLLLFMSW 116
              A +N N WSG + L+PLLG FV D++LGRY T+          L+LL +SW
Sbjct: 77  LKMAVKNTNYWSGVTTLMPLLGGFVADAYLGRYGTVLLATTIYLMGLILLTLSW 130

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RX67|PTR24_ARATH Probable peptide/nitrate transporter At1g72130 OS=Arabidopsis thaliana GN=At1g72130 PE=2 SV=1

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/82 (62%), Positives = 61/82 (74%)

Query: 28  VHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQ 87
           +    SGGWKSA  II V+MAERFA+ G  SNLI YLTGPLG+STA AA N N W+GT  
Sbjct: 21  IRENTSGGWKSARLIIVVQMAERFAYFGIASNLIMYLTGPLGESTAAAAANVNAWTGTVA 80

Query: 88  LLPLLGAFVGDSFLGRYQTIFL 109
            LPLLG F+ DS+LGR++TI +
Sbjct: 81  FLPLLGGFLADSYLGRFRTIII 102

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	116
224135667	571	predicted protein [Populus trichocarpa]	0.931	0.189	0.675	4e-36
224100871	571	predicted protein [Populus trichocarpa]	0.931	0.189	0.675	4e-36
224166433	125	predicted protein [Populus trichocarpa]	0.965	0.896	0.654	9e-36
224135663	1099	predicted protein [Populus trichocarpa]	0.905	0.095	0.685	4e-35
224135671	565	predicted protein [Populus trichocarpa]	0.931	0.191	0.657	7e-35
359493316	1119	PREDICTED: uncharacterized protein LOC10	0.862	0.089	0.669	9e-35
224146333	1098	predicted protein [Populus trichocarpa]	0.818	0.086	0.736	1e-34
147821379	569	hypothetical protein VITISV_031690 [Viti	0.827	0.168	0.718	2e-34
296089510	606	unnamed protein product [Vitis vinifera]	0.827	0.158	0.718	2e-34
224146337	596	predicted protein [Populus trichocarpa]	0.801	0.156	0.741	5e-34

>gi|224135667|ref|XP_002327275.1| predicted protein [Populus trichocarpa] gi|222835645|gb|EEE74080.1| predicted protein [Populus trichocarpa]

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 75/111 (67%), Positives = 88/111 (79%), Gaps = 3/111 (2%)

Query: 2   DISDTETLMLQR---QDTVDDCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGS 58
           ++S +ET  ++     DTVDDCVDY+G PV R NSGGW+SA FIIGVE+AERFA+ G  S
Sbjct: 5   NLSSSETQEVRTPLLNDTVDDCVDYKGNPVCRYNSGGWRSAAFIIGVEVAERFAYYGISS 64

Query: 59  NLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFL 109
           NLITYLTGPLGQST TAA+N N WSGT+ LLPL GAFV DSFLGR +TI +
Sbjct: 65  NLITYLTGPLGQSTVTAAKNVNVWSGTASLLPLFGAFVADSFLGRCRTIII 115

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100871|ref|XP_002334327.1| predicted protein [Populus trichocarpa] gi|222871062|gb|EEF08193.1| predicted protein [Populus trichocarpa]

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 75/111 (67%), Positives = 88/111 (79%), Gaps = 3/111 (2%)

Query: 2   DISDTETLMLQR---QDTVDDCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGS 58
           ++S +ET  ++     DTVDDCVDY+G PV R NSGGW+SA FIIGVE+AERFA+ G  S
Sbjct: 5   NLSSSETQEVRTPLLNDTVDDCVDYKGNPVCRYNSGGWRSAAFIIGVEVAERFAYYGISS 64

Query: 59  NLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFL 109
           NLITYLTGPLGQST TAA+N N WSGT+ LLPL GAFV DSFLGR +TI +
Sbjct: 65  NLITYLTGPLGQSTVTAAKNVNVWSGTASLLPLFGAFVADSFLGRCRTIII 115

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224166433|ref|XP_002338933.1| predicted protein [Populus trichocarpa] gi|222873955|gb|EEF11086.1| predicted protein [Populus trichocarpa]

 Score =  154 bits (388), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 74/113 (65%), Positives = 89/113 (78%), Gaps = 1/113 (0%)

Query: 3   ISDTETLMLQRQDTVDDCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLIT 62
           +S +    L   D VD  VDY+ RP +R+NSGGW+SA FIIGVE+AERFA+ G  SNLIT
Sbjct: 1   MSSSNQTPLLSYDIVDGSVDYKSRPAYRSNSGGWRSASFIIGVEVAERFAYYGISSNLIT 60

Query: 63  YLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQT-IFLLLLFM 114
           YLTGPLGQSTATAA+N N W+GT+ LLPLLGAFV DSFLGRY+T IF  L+++
Sbjct: 61  YLTGPLGQSTATAAENVNVWAGTASLLPLLGAFVADSFLGRYRTIIFASLIYI 113

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135663|ref|XP_002327274.1| predicted protein [Populus trichocarpa] gi|222835644|gb|EEE74079.1| predicted protein [Populus trichocarpa]

 Score =  151 bits (382), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 72/105 (68%), Positives = 84/105 (80%)

Query: 3   ISDTETLMLQRQDTVDDCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLIT 62
           +S +    L   D VD  VDY+ RP +R+NSGGW+SA FIIGVE+AERFA+ G  SNLIT
Sbjct: 545 MSSSNQTPLLSYDIVDGSVDYKSRPAYRSNSGGWRSASFIIGVEVAERFAYYGISSNLIT 604

Query: 63  YLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTI 107
           YLTGPLGQSTATAA+N N W+GT+ LLPLLGAFV DSFLGRY+TI
Sbjct: 605 YLTGPLGQSTATAAENVNVWAGTASLLPLLGAFVADSFLGRYRTI 649

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135671|ref|XP_002327276.1| predicted protein [Populus trichocarpa] gi|222835646|gb|EEE74081.1| predicted protein [Populus trichocarpa]

 Score =  150 bits (380), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 73/111 (65%), Positives = 87/111 (78%), Gaps = 3/111 (2%)

Query: 2   DISDTETLMLQR---QDTVDDCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGS 58
           ++S +ET  ++     DTVDDCVDY+G PV R NSGGW+SA FIIGVE+AERF+F G  S
Sbjct: 5   NLSSSETQEVRTPLLNDTVDDCVDYKGNPVCRYNSGGWRSASFIIGVEVAERFSFYGISS 64

Query: 59  NLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFL 109
           NLI YLTGPLGQST TAA+N N WSGT+ LLPL GAFV DSFLG+ +TI +
Sbjct: 65  NLIMYLTGPLGQSTITAAKNVNVWSGTASLLPLFGAFVADSFLGKCRTIII 115

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493316|ref|XP_003634567.1| PREDICTED: uncharacterized protein LOC100852988 [Vitis vinifera]

 Score =  150 bits (379), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 69/103 (66%), Positives = 85/103 (82%)

Query: 7   ETLMLQRQDTVDDCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTG 66
           ++ +  ++DTVD  VD++G P  R+ SGGW+SA+FIIGVE+AERFA+CG GSNLI YLTG
Sbjct: 557 KSYIYNKRDTVDGSVDHQGYPSKRSISGGWRSAIFIIGVEVAERFAYCGIGSNLINYLTG 616

Query: 67  PLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFL 109
           PLGQSTA AA N N W+GT+ LLPLLGAFV DS+LGRY+TI L
Sbjct: 617 PLGQSTAMAAANVNTWAGTATLLPLLGAFVADSYLGRYRTIVL 659

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146333|ref|XP_002325969.1| predicted protein [Populus trichocarpa] gi|222862844|gb|EEF00351.1| predicted protein [Populus trichocarpa]

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/95 (73%), Positives = 82/95 (86%)

Query: 15  DTVDDCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTAT 74
           D VD  VD++GRPV+R+NSGGW+SA FIIGVE+AERFA+ G  SNLITYLTGPLGQSTAT
Sbjct: 550 DIVDGSVDHKGRPVYRSNSGGWRSAGFIIGVEVAERFAYYGISSNLITYLTGPLGQSTAT 609

Query: 75  AAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFL 109
           AA+N N W+GT+ LLP+LGAFV DSFLGRY TI +
Sbjct: 610 AAENVNLWAGTATLLPILGAFVADSFLGRYTTIIV 644

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147821379|emb|CAN63509.1| hypothetical protein VITISV_031690 [Vitis vinifera]

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/96 (71%), Positives = 81/96 (84%)

Query: 14  QDTVDDCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTA 73
           +DTVD  VD++G P  R+ SGGW+SA+FIIGVE+AERFA+CG GSNLI YLTGPLGQSTA
Sbjct: 14  EDTVDGSVDHQGYPSKRSISGGWRSAIFIIGVEVAERFAYCGIGSNLINYLTGPLGQSTA 73

Query: 74  TAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFL 109
            AA N N W+GT+ LLPLLGAFV DS+LGRY+TI L
Sbjct: 74  MAAANVNTWAGTATLLPLLGAFVADSYLGRYRTIVL 109

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089510|emb|CBI39329.3| unnamed protein product [Vitis vinifera]

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/96 (71%), Positives = 81/96 (84%)

Query: 14  QDTVDDCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTA 73
           +DTVD  VD++G P  R+ SGGW+SA+FIIGVE+AERFA+CG GSNLI YLTGPLGQSTA
Sbjct: 14  EDTVDGSVDHQGYPSKRSISGGWRSAIFIIGVEVAERFAYCGIGSNLINYLTGPLGQSTA 73

Query: 74  TAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFL 109
            AA N N W+GT+ LLPLLGAFV DS+LGRY+TI L
Sbjct: 74  MAAANVNTWAGTATLLPLLGAFVADSYLGRYRTIVL 109

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146337|ref|XP_002325970.1| predicted protein [Populus trichocarpa] gi|222862845|gb|EEF00352.1| predicted protein [Populus trichocarpa]

 Score =  148 bits (373), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 69/93 (74%), Positives = 79/93 (84%)

Query: 15  DTVDDCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTAT 74
           D+V+  VDY+G PVHR+ SGGW+SA FII VE+AERFA+ G  SNLITYLTGPLGQSTA+
Sbjct: 28  DSVNGSVDYKGNPVHRSTSGGWRSASFIIAVEVAERFAYFGISSNLITYLTGPLGQSTAS 87

Query: 75  AAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTI 107
           AA N N WSGT+ LLPLLGAFV DSFLGRY+TI
Sbjct: 88  AAANVNTWSGTATLLPLLGAFVADSFLGRYRTI 120

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	116
TAIR|locus:2009472	564	AT1G22550 [Arabidopsis thalian	0.948	0.195	0.589	5.7e-32
TAIR|locus:2009542	565	AT1G22570 [Arabidopsis thalian	0.948	0.194	0.598	1e-30
TAIR|locus:2030326	557	AT1G72120 [Arabidopsis thalian	0.913	0.190	0.607	2e-30
TAIR|locus:2009487	557	AT1G22540 [Arabidopsis thalian	0.75	0.156	0.735	4.3e-30
TAIR|locus:4515102750	561	AT1G72125 [Arabidopsis thalian	0.913	0.188	0.607	9.5e-28
TAIR|locus:2206991	555	AT1G72140 [Arabidopsis thalian	0.956	0.2	0.495	3.7e-23
TAIR|locus:2030316	538	AT1G72130 [Arabidopsis thalian	0.689	0.148	0.654	1.2e-22
TAIR|locus:1006230253	555	AT3G54450 [Arabidopsis thalian	0.706	0.147	0.609	2.8e-22
TAIR|locus:2065568	575	AT2G37900 [Arabidopsis thalian	0.905	0.182	0.438	2.8e-20
TAIR|locus:2084500	602	AT3G53960 [Arabidopsis thalian	0.844	0.162	0.469	8.4e-20

TAIR|locus:2009472 AT1G22550 [Arabidopsis thaliana (taxid:3702)]

 Score = 354 (129.7 bits), Expect = 5.7e-32, P = 5.7e-32
 Identities = 66/112 (58%), Positives = 89/112 (79%)

Query:     1 MDISDTETLMLQRQDTVDDCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNL 60
             M I++ E  +++  D+V D VD+RG P  ++++GGW+SA +IIGVE+ ERFA+ G GSNL
Sbjct:     1 MAIAEEEAALIE--DSVSDSVDHRGLPAGKSSTGGWRSAWYIIGVEVGERFAYFGIGSNL 58

Query:    61 ITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112
             ITYLTGPLGQSTATAA N N WSGT+ +LP+LGAF+ D++LGRY+TI +  L
Sbjct:    59 ITYLTGPLGQSTATAAVNVNTWSGTASILPVLGAFIADAYLGRYRTIVVASL 110

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2009542 AT1G22570 [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 1.0e-30, P = 1.0e-30
 Identities = 67/112 (59%), Positives = 85/112 (75%)

Query:     1 MDISDTETLMLQRQDTVDDCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNL 60
             M I + E  +L+  D V D VD+RG P  ++++GGW+SA FIIGVE+AERFA+ G   NL
Sbjct:     1 MKIPEEEVALLE--DYVSDSVDHRGFPAGKSSTGGWRSAWFIIGVEVAERFAYFGIACNL 58

Query:    61 ITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL 112
             ITYLTGPLGQSTA AA N N WSGT+ +LP+LGAFV D++LGRY+TI +  L
Sbjct:    59 ITYLTGPLGQSTAKAAVNVNTWSGTASILPILGAFVADAYLGRYRTIVVASL 110

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2030326 AT1G72120 [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 2.0e-30, P = 2.0e-30
 Identities = 65/107 (60%), Positives = 84/107 (78%)

Query:     3 ISDTETLMLQRQDTVDDCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLIT 62
             ++ T  + LQ ++ V D VD+RG    R+N+G W++ALFIIGVE+AERFA+ G GSNLI+
Sbjct:     1 MTTTSEISLQ-EEYVTDAVDHRGLAARRSNTGRWRAALFIIGVEVAERFAYYGIGSNLIS 59

Query:    63 YLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFL 109
             YLTGPLG+STA AA N N WSG + LLP+LGAFV D+FLGRY+TI +
Sbjct:    60 YLTGPLGESTAVAAANVNAWSGIATLLPVLGAFVADAFLGRYRTIII 106

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2009487 AT1G22540 [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 4.3e-30, P = 4.3e-30
 Identities = 64/87 (73%), Positives = 74/87 (85%)

Query:    21 VDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNAN 80
             VDYR +P  +++SGGW+SA FIIGVE+AERFA+ G  SNLITYLTGPLGQSTA AA N N
Sbjct:    19 VDYRNKPAVKSSSGGWRSAGFIIGVEVAERFAYYGISSNLITYLTGPLGQSTAAAAANVN 78

Query:    81 KWSGTSQLLPLLGAFVGDSFLGRYQTI 107
              WSGT+ LLPLLGAFV DSFLGR++TI
Sbjct:    79 AWSGTASLLPLLGAFVADSFLGRFRTI 105

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:4515102750 AT1G72125 [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 9.5e-28, P = 9.5e-28
 Identities = 65/107 (60%), Positives = 79/107 (73%)

Query:     3 ISDTETLMLQRQDTVDDCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLIT 62
             ++ T    LQ ++ V D VD+RG    R+ +G W++A FIIGVE+AERFA  G GSNLI+
Sbjct:     1 MTTTSKTSLQ-EEYVIDAVDHRGFSARRSITGRWRAAWFIIGVEVAERFANYGIGSNLIS 59

Query:    63 YLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFL 109
             YLTGPLGQSTA AA N N WSG S +LPLLGAFV D+FLGRY TI +
Sbjct:    60 YLTGPLGQSTAVAAANVNAWSGISTILPLLGAFVADAFLGRYITIII 106

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2206991 AT1G72140 [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 3.7e-23, P = 3.7e-23
 Identities = 55/111 (49%), Positives = 72/111 (64%)

Query:     3 ISDTETLMLQRQDTVDDCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLIT 62
             I D ET  +   + V+  VD+RG P  R++SG WKS+ F +  E+AE+FA+ G  SNLIT
Sbjct:     5 IGDNETGAIVSNENVEFSVDFRGNPSIRSSSGAWKSSGFTMCAEVAEKFAYFGIASNLIT 64

Query:    63 YLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF 113
             Y T  LG+STA AA N N W GT+  LPL+   + DSFLGR++TI L   F
Sbjct:    65 YFTEALGESTAVAASNVNLWLGTAAFLPLIWGSIADSFLGRFRTILLTSSF 115

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP;RCA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2030316 AT1G72130 [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 1.2e-22, P = 1.2e-22
 Identities = 53/81 (65%), Positives = 62/81 (76%)

Query:    30 RAN-SGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQL 88
             R N SGGWKSA  II V+MAERFA+ G  SNLI YLTGPLG+STA AA N N W+GT   
Sbjct:    22 RENTSGGWKSARLIIVVQMAERFAYFGIASNLIMYLTGPLGESTAAAAANVNAWTGTVAF 81

Query:    89 LPLLGAFVGDSFLGRYQTIFL 109
             LPLLG F+ DS+LGR++TI +
Sbjct:    82 LPLLGGFLADSYLGRFRTIII 102

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:1006230253 AT3G54450 [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 2.8e-22, P = 2.8e-22
 Identities = 50/82 (60%), Positives = 63/82 (76%)

Query:    28 VHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQ 87
             +++   GGW +ALFII VE+AERFAF G  SNLIT+LT  LGQSTATAA+N N W G S 
Sbjct:     8 INKRTKGGWNAALFIIVVEIAERFAFYGLASNLITFLTNELGQSTATAAKNINTWIGVSC 67

Query:    88 LLPLLGAFVGDSFLGRYQTIFL 109
             + P+LGAF+ DS LGR++T+ L
Sbjct:    68 MFPILGAFLADSILGRFKTVLL 89

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2065568 AT2G37900 [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 2.8e-20, P = 2.8e-20
 Identities = 50/114 (43%), Positives = 71/114 (62%)

Query:    12 QRQDTVDDCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQS 71
             Q++  +D  +D RGR   RA +G W++ALFII +E +ER ++ G  +NL+ YLT  L Q 
Sbjct:    18 QQKWVLDSSLDSRGRVPLRARTGAWRAALFIIAIEFSERLSYFGLATNLVVYLTTILNQD 77

Query:    72 TATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIF---------LLLLFMSW 116
                A +N N WSG + L+PLLG F+ D++LGRY T+          L+LL MSW
Sbjct:    78 LKMAIRNVNYWSGVTTLMPLLGGFIADAYLGRYATVLVATTIYLMGLVLLTMSW 131

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2084500 AT3G53960 [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 8.4e-20, P = 8.4e-20
 Identities = 46/98 (46%), Positives = 64/98 (65%)

Query:    12 QRQDTVDDCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQS 71
             Q++  +D   D RG    RA +G W++ALFIIG+E +ER ++ G  +NL+ YLT  L Q 
Sbjct:    17 QQKWVLDSSTDSRGEIPLRAQTGAWRAALFIIGIEFSERLSYFGISTNLVVYLTTILHQD 76

Query:    72 TATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFL 109
                A +N N WSG + L+PLLG FV D++LGRY T+ L
Sbjct:    77 LKMAVKNTNYWSGVTTLMPLLGGFVADAYLGRYGTVLL 114

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00410141 hypothetical protein (571 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	116
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	1e-08
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	2e-04

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 50.7 bits (122), Expect = 1e-08
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 42  IIGVEMAERFAFCGTGSNLITYLT----GPLGQSTATAAQNANKWSGTSQLLPLLGAFVG 97
           I  VE+ ERF++ G  + LI YL       LG     A    + +     L P++G ++ 
Sbjct: 26  IFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLA 85

Query: 98  DSFLGRYQTIFLLLLFM 114
           D  LG  +TI L  + M
Sbjct: 86  DRVLGTRRTIVLGAILM 102

Length = 498

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 45  VEMAERFAFCGTGSNLITYL--TGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLG 102
           VE+ ERF++ G    L  YL     LG S   A      +S    LL  +G + GD   G
Sbjct: 18  VELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWG 77

Query: 103 RYQTIFL 109
             +T+ L
Sbjct: 78  TKKTMVL 84

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	116
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.57
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.51
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.36
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.32
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.24
PRK10642	490	proline/glycine betaine transporter; Provisional	98.99
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	98.98
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.84
PRK09952	438	shikimate transporter; Provisional	98.84
PRK10054	395	putative transporter; Provisional	98.83
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.76
PRK09528	420	lacY galactoside permease; Reviewed	98.76
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.76
PRK12382	392	putative transporter; Provisional	98.73
PRK05122	399	major facilitator superfamily transporter; Provisi	98.7
PRK15075	434	citrate-proton symporter; Provisional	98.68
TIGR00891	405	2A0112 putative sialic acid transporter.	98.61
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.61
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.6
PF12832	77	MFS_1_like: MFS_1 like family	98.59
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.59
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.58
PRK03633	381	putative MFS family transporter protein; Provision	98.57
PRK15011	393	sugar efflux transporter B; Provisional	98.53
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.52
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.51
PRK10504	471	putative transporter; Provisional	98.5
PRK03893	496	putative sialic acid transporter; Provisional	98.48
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.48
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.45
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.44
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.43
PRK03699	394	putative transporter; Provisional	98.43
TIGR00891	405	2A0112 putative sialic acid transporter.	98.42
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.42
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.42
PLN00028	476	nitrate transmembrane transporter; Provisional	98.41
TIGR00901	356	2A0125 AmpG-related permease.	98.4
TIGR00895	398	2A0115 benzoate transport.	98.4
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.39
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.39
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.38
PRK12307	426	putative sialic acid transporter; Provisional	98.38
PRK15011	393	sugar efflux transporter B; Provisional	98.38
KOG2532	466	consensus Permease of the major facilitator superf	98.36
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.36
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.35
PRK10133	438	L-fucose transporter; Provisional	98.33
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.33
PRK03699	394	putative transporter; Provisional	98.33
PRK09874	408	drug efflux system protein MdtG; Provisional	98.29
PRK11043	401	putative transporter; Provisional	98.29
TIGR00893	399	2A0114 d-galactonate transporter.	98.28
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.27
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.27
PRK03545	390	putative arabinose transporter; Provisional	98.27
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.26
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.26
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.25
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.25
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.25
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.23
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.21
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.2
KOG0569	485	consensus Permease of the major facilitator superf	98.19
TIGR00900	365	2A0121 H+ Antiporter protein.	98.18
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.17
PRK12307	426	putative sialic acid transporter; Provisional	98.17
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.14
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.14
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.14
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.13
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.13
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.12
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.12
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.11
PRK03893	496	putative sialic acid transporter; Provisional	98.11
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.11
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.1
PRK11663	434	regulatory protein UhpC; Provisional	98.1
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.1
PRK09705	393	cynX putative cyanate transporter; Provisional	98.09
PRK10091	382	MFS transport protein AraJ; Provisional	98.09
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.09
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.08
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.08
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.08
PRK10133	438	L-fucose transporter; Provisional	98.08
PRK11010	491	ampG muropeptide transporter; Validated	98.07
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.07
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.06
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.05
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.05
PRK10429	473	melibiose:sodium symporter; Provisional	98.05
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.04
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.04
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.02
PRK10504	471	putative transporter; Provisional	98.01
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.0
PRK09952	438	shikimate transporter; Provisional	97.99
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	97.99
PLN00028	476	nitrate transmembrane transporter; Provisional	97.99
PRK10091	382	MFS transport protein AraJ; Provisional	97.98
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	97.98
TIGR00895	398	2A0115 benzoate transport.	97.98
PRK14995	495	methyl viologen resistance protein SmvA; Provision	97.97
PF13347	428	MFS_2: MFS/sugar transport protein	97.97
PRK10077	479	xylE D-xylose transporter XylE; Provisional	97.96
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	97.93
PRK10473	392	multidrug efflux system protein MdtL; Provisional	97.91
PRK03545	390	putative arabinose transporter; Provisional	97.9
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	97.9
PRK09705	393	cynX putative cyanate transporter; Provisional	97.89
PRK10429	473	melibiose:sodium symporter; Provisional	97.89
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	97.89
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	97.87
PRK09848	448	glucuronide transporter; Provisional	97.87
PRK11663	434	regulatory protein UhpC; Provisional	97.86
KOG2533	495	consensus Permease of the major facilitator superf	97.85
PTZ00207	591	hypothetical protein; Provisional	97.85
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	97.84
PRK09669	444	putative symporter YagG; Provisional	97.84
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	97.84
PRK03633	381	putative MFS family transporter protein; Provision	97.84
TIGR00900	365	2A0121 H+ Antiporter protein.	97.84
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	97.83
TIGR00805	633	oat sodium-independent organic anion transporter.	97.79
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	97.78
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	97.78
TIGR00893	399	2A0114 d-galactonate transporter.	97.77
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	97.74
PRK15075	434	citrate-proton symporter; Provisional	97.74
PRK10642	490	proline/glycine betaine transporter; Provisional	97.73
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.71
TIGR00896	355	CynX cyanate transporter. This family of proteins	97.71
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.69
PRK09528	420	lacY galactoside permease; Reviewed	97.68
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	97.68
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	97.68
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	97.67
PRK10489	417	enterobactin exporter EntS; Provisional	97.62
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	97.61
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	97.59
PRK10077	479	xylE D-xylose transporter XylE; Provisional	97.57
PRK11902	402	ampG muropeptide transporter; Reviewed	97.57
PRK09848	448	glucuronide transporter; Provisional	97.57
TIGR00805	633	oat sodium-independent organic anion transporter.	97.54
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.54
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	97.53
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	97.52
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.46
TIGR00898	505	2A0119 cation transport protein.	97.44
PF13347	428	MFS_2: MFS/sugar transport protein	97.43
COG2211	467	MelB Na+/melibiose symporter and related transport	97.43
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	97.37
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.37
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.36
KOG1330	493	consensus Sugar transporter/spinster transmembrane	97.35
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	97.34
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.3
PRK11043	401	putative transporter; Provisional	97.28
PRK10489	417	enterobactin exporter EntS; Provisional	97.27
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.27
PRK09874	408	drug efflux system protein MdtG; Provisional	97.21
PRK11462	460	putative transporter; Provisional	97.21
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.21
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	97.18
PRK05122	399	major facilitator superfamily transporter; Provisi	97.13
KOG0254	513	consensus Predicted transporter (major facilitator	97.12
PRK11902	402	ampG muropeptide transporter; Reviewed	97.11
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.11
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	97.11
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.08
TIGR00892	455	2A0113 monocarboxylate transporter 1.	97.07
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.07
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	97.02
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	97.0
PRK12382	392	putative transporter; Provisional	97.0
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	96.99
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	96.98
PRK10213	394	nepI ribonucleoside transporter; Reviewed	96.95
PRK11010	491	ampG muropeptide transporter; Validated	96.94
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	96.92
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	96.92
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	96.92
PRK11195	393	lysophospholipid transporter LplT; Provisional	96.91
PRK11462	460	putative transporter; Provisional	96.88
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	96.85
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	96.81
PRK09669	444	putative symporter YagG; Provisional	96.69
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	96.68
TIGR00898	505	2A0119 cation transport protein.	96.57
KOG3762	618	consensus Predicted transporter [General function	96.55
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	96.49
KOG0254	513	consensus Predicted transporter (major facilitator	96.45
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	96.4
TIGR00901	356	2A0125 AmpG-related permease.	96.33
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	96.23
COG2211	467	MelB Na+/melibiose symporter and related transport	96.17
KOG0637	498	consensus Sucrose transporter and related proteins	96.05
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	96.02
KOG2615	451	consensus Permease of the major facilitator superf	95.97
PRK10054	395	putative transporter; Provisional	95.96
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	95.94
PRK11652	394	emrD multidrug resistance protein D; Provisional	95.84
KOG2563	480	consensus Permease of the major facilitator superf	95.84
PRK15403	413	multidrug efflux system protein MdtM; Provisional	95.77
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	95.69
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	95.24
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	95.1
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	95.09
KOG3626	735	consensus Organic anion transporter [Secondary met	95.07
KOG2325	488	consensus Predicted transporter/transmembrane prot	95.01
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	94.95
KOG2532	466	consensus Permease of the major facilitator superf	94.88
PRK11646	400	multidrug resistance protein MdtH; Provisional	94.87
KOG0569	485	consensus Permease of the major facilitator superf	94.53
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	94.49
COG0477	338	ProP Permeases of the major facilitator superfamil	94.32
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	92.49
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	91.06
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	90.72
KOG2816	463	consensus Predicted transporter ADD1 (major facili	90.22
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	89.91
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	89.87
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	89.86
TIGR00788	468	fbt folate/biopterin transporter. The only functio	89.59
KOG2816	463	consensus Predicted transporter ADD1 (major facili	89.56
KOG2533	495	consensus Permease of the major facilitator superf	89.52
PRK10207	489	dipeptide/tripeptide permease B; Provisional	89.21
KOG3764	464	consensus Vesicular amine transporter [Intracellul	88.28
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	87.38
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	86.98
KOG4830	412	consensus Predicted sugar transporter [Carbohydrat	85.39
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	83.43
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	83.35
COG5505	384	Predicted integral membrane protein [Function unkn	80.52
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	80.18
COG2270	438	Permeases of the major facilitator superfamily [Ge	80.08

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.57  E-value=1.8e-14  Score=115.96  Aligned_cols=92  Identities=27%  Similarity=0.391  Sum_probs=84.6

Q ss_pred             CCCcccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC----CChHHHHHHHHHHHHHHhhhhhHHHHhhhc
Q 048637           24 RGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLG----QSTATAAQNANKWSGTSQLLPLLGAFVGDS   99 (116)
Q Consensus        24 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg----~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr   99 (116)
                      ...+..+..-+|||+++.++.++++|+++||++..-+..|++.+++    ++++++......+....+..+++|||+|||
T Consensus         8 ~~~~~~~~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr   87 (498)
T COG3104           8 ENTTLEMKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADR   87 (498)
T ss_pred             cccccccccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555666799999999999999999999999999999998887    999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHHh
Q 048637          100 FLGRYQTIFLLLLFMS  115 (116)
Q Consensus       100 ~iGRr~~i~~~~il~~  115 (116)
                      ++|+||++..|+++++
T Consensus        88 ~LG~~~tI~lGail~~  103 (498)
T COG3104          88 VLGTRRTIVLGAILMA  103 (498)
T ss_pred             hcchhHHHHHHHHHHH
Confidence            9999999999998764

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.51  E-value=1.2e-13  Score=111.21  Aligned_cols=83  Identities=27%  Similarity=0.345  Sum_probs=78.0

Q ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHH
Q 048637           32 NSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLL  111 (116)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~  111 (116)
                      +++|||.++.+++++++|+++||++..+++.|+++.+|++..++..+...+.+..++.++++|+++||++||||++..+.
T Consensus         9 ~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~   88 (489)
T PRK10207          9 LLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGA   88 (489)
T ss_pred             hhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHH
Confidence            35799999999999999999999999999999999999999999999999999999999999999999559999999998


Q ss_pred             HHH
Q 048637          112 LFM  114 (116)
Q Consensus       112 il~  114 (116)
                      ++.
T Consensus        89 ~~~   91 (489)
T PRK10207         89 IVL   91 (489)
T ss_pred             HHH
Confidence            764

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.36  E-value=5.2e-12  Score=102.34  Aligned_cols=81  Identities=26%  Similarity=0.451  Sum_probs=76.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           34 GGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      +|||.++.+++.+++++.++|++..++|.|+++.+|+++.++..+...+.+..+++++++|+++||++||||++.++.++
T Consensus         6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il   85 (493)
T PRK15462          6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL   85 (493)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999944999999988765


Q ss_pred             H
Q 048637          114 M  114 (116)
Q Consensus       114 ~  114 (116)
                      .
T Consensus        86 ~   86 (493)
T PRK15462         86 M   86 (493)
T ss_pred             H
Confidence            4

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.32  E-value=1.4e-11  Score=98.58  Aligned_cols=83  Identities=29%  Similarity=0.329  Sum_probs=76.8

Q ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHH
Q 048637           32 NSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGP--LGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFL  109 (116)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~--lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~  109 (116)
                      ..+|||.++..++.+++|+.++|++..++|.|++++  +|++..++..+...+.+...++++++|+++||++|||+++.+
T Consensus         5 ~~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~   84 (475)
T TIGR00924         5 FFGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVL   84 (475)
T ss_pred             ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHH
Confidence            356899999999999999999999999999999987  999999999999999999999999999999994499999998


Q ss_pred             HHHHH
Q 048637          110 LLLFM  114 (116)
Q Consensus       110 ~~il~  114 (116)
                      +.++.
T Consensus        85 ~~~~~   89 (475)
T TIGR00924        85 GGIVL   89 (475)
T ss_pred             HHHHH
Confidence            88654

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.24  E-value=8.8e-11  Score=94.69  Aligned_cols=81  Identities=27%  Similarity=0.406  Sum_probs=72.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           34 GGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      +|+|.++.+++.+++++.++|++..+++.|+++++|++..++..+...+.......++++|+++||++|||+++..+.++
T Consensus        18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~   97 (500)
T PRK09584         18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIV   97 (500)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            67888999999999999999999999999999999999999988888887777788889999999944999999988765


Q ss_pred             H
Q 048637          114 M  114 (116)
Q Consensus       114 ~  114 (116)
                      .
T Consensus        98 ~   98 (500)
T PRK09584         98 L   98 (500)
T ss_pred             H
Confidence            4

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.99  E-value=2.8e-09  Score=85.22  Aligned_cols=87  Identities=16%  Similarity=0.169  Sum_probs=71.2

Q ss_pred             CCcccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchH
Q 048637           25 GRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRY  104 (116)
Q Consensus        25 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr  104 (116)
                      +.|.++.++++++.+...+...++....+|++..|+|+|++..+|++..++........+...++.+++|+++|| +|||
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr  316 (490)
T PRK10642        238 KVSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDR-FGRR  316 (490)
T ss_pred             cCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccH
Confidence            346666777777777666666666778899999999999998899999888777777778888899999999999 5999


Q ss_pred             HHHHHHHH
Q 048637          105 QTIFLLLL  112 (116)
Q Consensus       105 ~~i~~~~i  112 (116)
                      +++..+.+
T Consensus       317 ~~~~~~~~  324 (490)
T PRK10642        317 PFVILGSV  324 (490)
T ss_pred             HHHHHHHH
Confidence            99887764

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=98.98  E-value=2.4e-09  Score=88.31  Aligned_cols=97  Identities=54%  Similarity=0.773  Sum_probs=90.9

Q ss_pred             CcccccCCCccccc---ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHH
Q 048637           18 DDCVDYRGRPVHRA---NSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGA   94 (116)
Q Consensus        18 ~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G   94 (116)
                      ++..|++..|..+.   .+..|+++.+.++.+.+++.++|++..++..|++..+|.+...+...+..+.+.....++++|
T Consensus        15 ~~~~d~~~~~~~~~~~~~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~   94 (571)
T KOG1237|consen   15 FTSVDYRGPLLGSSIAFKTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGA   94 (571)
T ss_pred             cceeeccCCcccccccceechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHH
Confidence            36789999888776   788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcccchHHHHHHHHHHH
Q 048637           95 FVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        95 ~LaDr~iGRr~~i~~~~il~  114 (116)
                      ++||.|+||.+++.+++++.
T Consensus        95 ~laD~f~gry~tI~~~s~i~  114 (571)
T KOG1237|consen   95 FLADSFLGRYFTINIGSLIS  114 (571)
T ss_pred             HHHHHHhHHHHHHHHHHHHH
Confidence            99999999999999998764

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.84  E-value=3.2e-08  Score=74.56  Aligned_cols=86  Identities=22%  Similarity=0.200  Sum_probs=70.7

Q ss_pred             CCcccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchH
Q 048637           25 GRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRY  104 (116)
Q Consensus        25 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr  104 (116)
                      ..+.++..+++++.++.......+....++....++|.|+++++|.+..++........+...++.+++|+++|| +|||
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~  285 (394)
T TIGR00883       207 RGPIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDR-IGRR  285 (394)
T ss_pred             cCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hchH
Confidence            345556666666667777777777788888888999999988899999999988888899999999999999999 5999


Q ss_pred             HHHHHHH
Q 048637          105 QTIFLLL  111 (116)
Q Consensus       105 ~~i~~~~  111 (116)
                      +.+..+.
T Consensus       286 ~~~~~~~  292 (394)
T TIGR00883       286 PVLIIFT  292 (394)
T ss_pred             HHHHHHH
Confidence            9876443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK09952 shikimate transporter; Provisional

Probab=98.84  E-value=2.3e-08  Score=78.94  Aligned_cols=85  Identities=22%  Similarity=0.129  Sum_probs=67.3

Q ss_pred             cccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHH
Q 048637           27 PVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQT  106 (116)
Q Consensus        27 p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~  106 (116)
                      |..+.++++++.....+...++....+|....|+|.|+++.+|++......+..+..++..++.+++|+++|| +||||+
T Consensus       240 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr-~grr~~  318 (438)
T PRK09952        240 PVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADR-FGRRRV  318 (438)
T ss_pred             CHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHH
Confidence            4444455667766666666777788899999999999999999998876666666777778888999999999 599999


Q ss_pred             HHHHHH
Q 048637          107 IFLLLL  112 (116)
Q Consensus       107 i~~~~i  112 (116)
                      +..+.+
T Consensus       319 ~~~~~~  324 (438)
T PRK09952        319 YITGAL  324 (438)
T ss_pred             HHHHHH
Confidence            887754

>PRK10054 putative transporter; Provisional

Probab=98.83  E-value=2.7e-08  Score=77.60  Aligned_cols=78  Identities=10%  Similarity=0.033  Sum_probs=69.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           35 GWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      .+|+.+......++...+++....++|.|+++++|++..+.......+.+...++.+++|+++|| +|||+++..+.++
T Consensus         5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~k~~~~~~~~~   82 (395)
T PRK10054          5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADK-FDKKRYMLLAITA   82 (395)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhHHHHHHH
Confidence            35667777777888888999999999999999999999999999999999999999999999999 5999999877754

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.76  E-value=7.2e-08  Score=74.54  Aligned_cols=73  Identities=15%  Similarity=0.038  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHH
Q 048637           38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLL  111 (116)
Q Consensus        38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~  111 (116)
                      .++......++....+.....++|.|+++++|+++.+...+.....+...++.+++|+++|| +|||+.++.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr-~grr~~~~~~~   75 (396)
T TIGR00882         3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDK-LGLKKHLLWII   75 (396)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHH
Confidence            34555556666667777788899999999999999999999999999999999999999999 59999998654

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.76  E-value=6.5e-08  Score=75.41  Aligned_cols=73  Identities=15%  Similarity=0.040  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHH
Q 048637           38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLL  111 (116)
Q Consensus        38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~  111 (116)
                      ..+......++....++....++|.|+++++|+++.+...+.....+...++.++.|+++|| +||||++..+.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr-~g~r~~~~~~~   83 (420)
T PRK09528         11 NYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDK-LGLKKHLLWII   83 (420)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHH
Confidence            44555556666667777788999999999999999999999999999999999999999999 59999987644

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.76  E-value=6.3e-08  Score=76.06  Aligned_cols=84  Identities=14%  Similarity=0.172  Sum_probs=63.8

Q ss_pred             cccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHH
Q 048637           27 PVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQT  106 (116)
Q Consensus        27 p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~  106 (116)
                      |.++.+| +++.....++........+|....|+|.|+.+..|++..++.....+...+..++.++.|+++|| +|||++
T Consensus       234 ~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr-~grr~~  311 (432)
T PRK10406        234 SLKGLWR-NRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDK-IGRRTS  311 (432)
T ss_pred             cHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHH
Confidence            4555554 44444444444445567788899999999998899999888877777777778888899999999 599998


Q ss_pred             HHHHHH
Q 048637          107 IFLLLL  112 (116)
Q Consensus       107 i~~~~i  112 (116)
                      +.++.+
T Consensus       312 ~~~~~~  317 (432)
T PRK10406        312 MLCFGS  317 (432)
T ss_pred             HHHHHH
Confidence            877654

>PRK12382 putative transporter; Provisional

Probab=98.73  E-value=8e-08  Score=73.96  Aligned_cols=75  Identities=11%  Similarity=-0.032  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637           37 KSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        37 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      +.++...+..+......+.....+|.|+.+++|.++.+.......+.+...++.+++|+++|| +||||++..+.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~   89 (392)
T PRK12382         15 FSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQ-YGAKRSALQGML   89 (392)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHh-hcchHHHHHHHH
Confidence            444555555555566666777788889988999999999999999999999999999999999 599999987654

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.70  E-value=1e-07  Score=73.39  Aligned_cols=77  Identities=16%  Similarity=0.004  Sum_probs=66.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           36 WKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      .+++.......+.......+....+|.|+.+++|.+..+...+...+.+...++.++.|+++|| +||||++..+.++
T Consensus        14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~   90 (399)
T PRK05122         14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADT-LGPKKAVVFGLCG   90 (399)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhc-cCCcchHHHHHHH
Confidence            3556666666677777777788899999999999999999999999999999999999999999 5999999987653

>PRK15075 citrate-proton symporter; Provisional

Probab=98.68  E-value=1.5e-07  Score=73.96  Aligned_cols=76  Identities=14%  Similarity=0.104  Sum_probs=61.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHH
Q 048637           35 GWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLL  111 (116)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~  111 (116)
                      +++.....+.........++....|+|.|+++..|++..++........+...++.+++|+++|| +|||+++..+.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~  311 (434)
T PRK15075        236 NWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDR-IGRRPVLIAFT  311 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHH
Confidence            44444444444455666788888999999998899999988888888888888999999999999 59999987754

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.61  E-value=4.6e-07  Score=68.88  Aligned_cols=83  Identities=17%  Similarity=0.163  Sum_probs=66.6

Q ss_pred             cccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHH
Q 048637           29 HRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIF  108 (116)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~  108 (116)
                      ++..+.+|+.+....+.........+......|. +.+++|++..+.........+...++.++.|+++|| +|||+++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~~~   81 (405)
T TIGR00891         4 RHLTRAQWNAFSAAWLGWLLDAFDFFLVALVLAE-VAGEFGLTTVDAASLISAALISRWFGALMFGLWGDR-YGRRLPMV   81 (405)
T ss_pred             CcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHH
Confidence            3344666777777777777777777766666664 456799999999999999999999999999999999 59999999


Q ss_pred             HHHHH
Q 048637          109 LLLLF  113 (116)
Q Consensus       109 ~~~il  113 (116)
                      .+.++
T Consensus        82 ~~~~~   86 (405)
T TIGR00891        82 TSIVL   86 (405)
T ss_pred             HHHHH
Confidence            87654

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.61  E-value=2.4e-07  Score=70.02  Aligned_cols=74  Identities=19%  Similarity=0.127  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           40 LFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        40 ~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      +..+...+......+....++|.++++++|+++.+...+.....+...++.+++|+++|| +|||+++..+.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~   77 (366)
T TIGR00886         4 FFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDK-FGPRYTTTLSLLLL   77 (366)
T ss_pred             HHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHH
Confidence            344445555566777777888888888999999999999999999999999999999999 59999998887653

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.60  E-value=4.3e-07  Score=70.93  Aligned_cols=79  Identities=16%  Similarity=0.106  Sum_probs=67.3

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637           33 SGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      ++.+|  +..+...++...+++.+..+++.|+++++|.+..+.........+...+..+++|+++|| +|||+++..+.+
T Consensus         8 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr-~g~k~~l~~~~~   84 (400)
T PRK11646          8 RNLGK--YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADR-FGAKPMIVTGML   84 (400)
T ss_pred             ccccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHH-hCchHHHHHHHH
Confidence            44555  555566677788888889999999999999999999999999999999999999999999 599999998776


Q ss_pred             HH
Q 048637          113 FM  114 (116)
Q Consensus       113 l~  114 (116)
                      +.
T Consensus        85 ~~   86 (400)
T PRK11646         85 MR   86 (400)
T ss_pred             HH
Confidence            53

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.59  E-value=5.6e-07  Score=56.07  Aligned_cols=63  Identities=30%  Similarity=0.278  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           50 RFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        50 ~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      ......+..|++.|+++ .|+++.+...+..+.-++..+++|+.|+++||+ ||++.+..+...+
T Consensus        13 f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~~   75 (77)
T PF12832_consen   13 FAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHHH
Confidence            33444566889999985 999999999999999999999999999999995 9888888777654

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.59  E-value=1.9e-07  Score=74.65  Aligned_cols=76  Identities=17%  Similarity=0.157  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhccc-chHHHHHHHHH
Q 048637           37 KSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFL-GRYQTIFLLLL  112 (116)
Q Consensus        37 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~i-GRr~~i~~~~i  112 (116)
                      |.+|++.+....-.+.=|++..+.|.|+.+..|++..++......+=.+..++++++||+|||++ |||....+.+.
T Consensus       252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~  328 (448)
T COG2271         252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFM  328 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHH
Confidence            56677877778888888999999999999999999999999999999999999999999999999 88876655543

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.58  E-value=4e-07  Score=72.28  Aligned_cols=72  Identities=13%  Similarity=0.036  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHH
Q 048637           38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLL  110 (116)
Q Consensus        38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~  110 (116)
                      .++......++....+++...++|.|+++..|++..++........+...++.+++|+++|| +|||+.+..+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~g~r~~~~~~  330 (467)
T PRK09556        259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDL-ANGRRALVAC  330 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCchHHHH
Confidence            45666666666677777888899999999999999999988888888999999999999999 5998876554

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.57  E-value=4.4e-07  Score=69.89  Aligned_cols=79  Identities=13%  Similarity=0.106  Sum_probs=69.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           34 GGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      .+.|+++..++..+...........++|.|+. ++|.+..+...+...+.+...++.++.|+++|| +|||+++..+.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr-~g~k~~~~~~~~~   80 (381)
T PRK03633          3 TYTRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKR-IGFNRSYYLASLI   80 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHH
Confidence            34577888888888888888888899999998 479999999999999999999999999999999 5999999887765


Q ss_pred             H
Q 048637          114 M  114 (116)
Q Consensus       114 ~  114 (116)
                      .
T Consensus        81 ~   81 (381)
T PRK03633         81 F   81 (381)
T ss_pred             H
Confidence            3

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.53  E-value=1.2e-06  Score=67.85  Aligned_cols=79  Identities=10%  Similarity=0.036  Sum_probs=57.8

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637           33 SGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      +++++..+..+.+.......++....++|.|+++++|++..++........+...++.+++|+++|| +|||+.+..+.+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr-~g~~~~~~~~~~  290 (393)
T PRK15011        212 RRNRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKR-LGKRFLMRVAAV  290 (393)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHH
Confidence            3344444444333344444555566789999998999999988887777777778889999999999 599998876543

>TIGR00897 2A0118 polyol permease family

Probab=98.52  E-value=7.4e-07  Score=69.29  Aligned_cols=78  Identities=17%  Similarity=0.106  Sum_probs=64.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           34 GGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      +.||++.......+......+....+++.|++ ++|.++.+.......+.+...++.+++|+++|| +||||++..+.++
T Consensus        10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr-~g~k~~l~~~~~~   87 (402)
T TIGR00897        10 GIPLNLLWGYIGVVVFMTGDGLEQGWLSPFLK-ALGLSPQQSASAFTLYGIAAAISAWISGVVAEI-IGPLKTMMIGLLL   87 (402)
T ss_pred             CCCchhhHHHHHHHHHHHhhhhHHHhHHHHHH-HhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHH
Confidence            34566767766666667777777778888884 589999999999999999999999999999999 5999999877654

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.51  E-value=1.3e-06  Score=68.04  Aligned_cols=86  Identities=13%  Similarity=0.050  Sum_probs=67.7

Q ss_pred             cccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHH
Q 048637           27 PVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQT  106 (116)
Q Consensus        27 p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~  106 (116)
                      ..++..|.+|+.+........+.....|.....+|.+. +++|.++.+.............++.++.|+++|| +|||++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~grr~~   87 (394)
T PRK10213         10 GADAITRPNWSAVFSVAFCVACLIIVEFLPVSLLTPMA-QDLGISEGVAGQSVTVTAFVAMFASLFITQTIQA-TDRRYV   87 (394)
T ss_pred             CCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcHHH
Confidence            34556677888766666655555556666666677655 4689999999999999999999999999999999 599999


Q ss_pred             HHHHHHHH
Q 048637          107 IFLLLLFM  114 (116)
Q Consensus       107 i~~~~il~  114 (116)
                      +..+.++.
T Consensus        88 ~~~~~~~~   95 (394)
T PRK10213         88 VILFAVLL   95 (394)
T ss_pred             HHHHHHHH
Confidence            99887654

>PRK10504 putative transporter; Provisional

Probab=98.50  E-value=1.1e-06  Score=69.35  Aligned_cols=76  Identities=11%  Similarity=0.076  Sum_probs=63.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           36 WKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      .+.++......++.....+.+...+|.|.. ++|.+..+...+...+.+...++.+++|+++|| +|||+++..+.++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~   84 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADR-VGVRNIFFTAIVL   84 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHH
Confidence            445666666677777788888888999886 599999999888888888989999999999999 5999999877544

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.48  E-value=1.4e-06  Score=68.95  Aligned_cols=88  Identities=20%  Similarity=0.180  Sum_probs=62.1

Q ss_pred             CCCccccccc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccc
Q 048637           24 RGRPVHRANS-GGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLG  102 (116)
Q Consensus        24 ~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iG  102 (116)
                      +..|..+..+ .+++.+.......+............+| ++.+++|.+..+.........+...++.+++|+++|| +|
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g   83 (496)
T PRK03893          6 QNIPWYRHLNRAQWKAFSAAWLGYLLDGFDFVLITLVLT-EVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDR-YG   83 (496)
T ss_pred             ccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hC
Confidence            3344444443 3445444444444555555554544444 4556799999999999999999999999999999999 59


Q ss_pred             hHHHHHHHHHH
Q 048637          103 RYQTIFLLLLF  113 (116)
Q Consensus       103 Rr~~i~~~~il  113 (116)
                      ||+++..+.++
T Consensus        84 ~r~~~~~~~~~   94 (496)
T PRK03893         84 RRLAMVISIVL   94 (496)
T ss_pred             cHHHHHHHHHH
Confidence            99999887654

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.48  E-value=3.3e-07  Score=72.75  Aligned_cols=92  Identities=14%  Similarity=-0.006  Sum_probs=60.4

Q ss_pred             cCCcccccCCCcccccccCChHHHHHHHHHHHHHHHHHHHH----HHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhh
Q 048637           16 TVDDCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGT----GSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPL   91 (116)
Q Consensus        16 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~----~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~   91 (116)
                      ..+.+.||.+.-.++..+   |..+..+.+.+......|..    ...+| .+.+++|++..+...+...+.....++.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~y~~r~~~~~~~~-~i~~~~~~s~~~~g~~~s~~~~~~~~~~~   82 (467)
T PRK09556          7 VRKPTLDLPLEVQRKMWF---KPFMQSYLVVFIGYLTMYLIRKNFKAAQN-DMISTYGLSTTELGMIGLGFSITYGVGKT   82 (467)
T ss_pred             cCCCccCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcChhhhhH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHh
Confidence            334566775544444333   33333333333333333332    22234 35567999999999999999999999999


Q ss_pred             HHHHhhhcccchHHHHHHHHH
Q 048637           92 LGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        92 ~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      ++|+++|| +|||+++..+.+
T Consensus        83 ~~G~l~Dr-~g~r~~l~~~~~  102 (467)
T PRK09556         83 LVGYYADG-KNTKQFLPFLLI  102 (467)
T ss_pred             hhhhHhhc-cCccchHHHHHH
Confidence            99999999 599999866543

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.45  E-value=1.6e-06  Score=67.93  Aligned_cols=78  Identities=10%  Similarity=0.026  Sum_probs=59.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           35 GWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      +|+.++...+...++..-...+.... ..+++++|++..+.......+.+...++.+++|+++|| +|||+++..+.++.
T Consensus         6 ~~~~~~~~~~~~~~~~~d~~~~~~~~-~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~~   83 (412)
T TIGR02332         6 FRRLIIFLFILFIFSFLDRINIGFAG-LTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAI-IGARRWIAGIMVLW   83 (412)
T ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHHH-HhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHH-hChHHHHHHHHHHH
Confidence            45555555544444444444443334 47888999999999999999999999999999999999 59999998877653

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.44  E-value=1.7e-06  Score=68.00  Aligned_cols=74  Identities=15%  Similarity=0.063  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           39 ALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        39 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      +.......++....++....++|.|+++..|+++.++........+...++.+++|+++|| +|||+++.++.++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~g~~~  330 (485)
T TIGR00711       257 FTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDK-IDPRKLVTIGLIL  330 (485)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcHHHHHHHHHH
Confidence            3444445555666777888899999999999999999999988999999999999999999 5999998877654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.43  E-value=1.2e-06  Score=69.83  Aligned_cols=76  Identities=22%  Similarity=0.255  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      ..|.....-+..-.++-+++.++|.|++++.|+++.++......+.....+.=+++|+|||| +|.+|+..+..+.+
T Consensus       219 ~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR-~Gg~rv~~~~f~~~  294 (417)
T COG2223         219 DTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDR-IGGRRVTLAVFVGM  294 (417)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhh-ccchhHHHHHHHHH
Confidence            34555555556666777888999999999999999999999999999999999999999999 59888887766543

>PRK03699 putative transporter; Provisional

Probab=98.43  E-value=2.8e-06  Score=65.78  Aligned_cols=75  Identities=13%  Similarity=0.005  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637           37 KSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        37 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      +.++......++....++.+..|+|.|+++++|+++.++........+...++.+++|+++|| +|||+++....+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~l~~~~~  279 (394)
T PRK03699        205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRF-FDLQRILTVLAG  279 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHH-hchhhHHHHHHH
Confidence            344444444455566677888999999998999999999999888888999999999999999 599998886654

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.42  E-value=1.5e-06  Score=66.01  Aligned_cols=72  Identities=24%  Similarity=0.180  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           41 FIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        41 ~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      .............+....++|.|++++.|++..++........+...++.++.|+++|| +|||+.+..+.++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~  313 (405)
T TIGR00891       242 YLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDW-LGRRKAYVCSLLA  313 (405)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchhhhHHHHHH
Confidence            33333344445555677789999998999999999999999999999999999999999 5999998876543

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.42  E-value=2.3e-06  Score=63.77  Aligned_cols=68  Identities=22%  Similarity=0.323  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           46 EMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        46 ~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      .+............+|.++.+++|.+..+...+.....+...++.+++|+++|| +|||+++..+.++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~   72 (352)
T PF07690_consen    5 FFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDR-FGRRRVLIIGLLLF   72 (352)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHH-S-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCeeeEeehhhhh
Confidence            344455555566667768888999999999999999999999999999999999 59999998887654

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.42  E-value=1.6e-06  Score=66.72  Aligned_cols=77  Identities=12%  Similarity=0.050  Sum_probs=59.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           35 GWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      .+|.++.......+...........+|.+. +++|.++.+...+...+.+...++.+++|+++|| +|||+++..+.++
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~grr~~~~~~~~~   82 (394)
T PRK11652          6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMA-RDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDR-VGRRPVILVGMSI   82 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHH
Confidence            445566566555555555554444555554 5799999999999999999999999999999999 5999999887654

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.41  E-value=2.8e-06  Score=67.96  Aligned_cols=80  Identities=11%  Similarity=-0.044  Sum_probs=60.5

Q ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHH
Q 048637           32 NSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLL  111 (116)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~  111 (116)
                      .+++++.+.......++.....+....++| ++.+++|++..+...+...+.+...++.+++|+++|| +|||+++..+.
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~G~r~~~~~~~  108 (476)
T PLN00028         31 ARPHMRAFHLSWISFFTCFVSTFAAAPLLP-IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDL-YGPRYGSAFLL  108 (476)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHH
Confidence            344566666666666666666665554444 4566899999999888888888888899999999999 59999998876


Q ss_pred             HH
Q 048637          112 LF  113 (116)
Q Consensus       112 il  113 (116)
                      ++
T Consensus       109 ~~  110 (476)
T PLN00028        109 ML  110 (476)
T ss_pred             HH
Confidence            54

>TIGR00901 2A0125 AmpG-related permease

Probab=98.40  E-value=1.9e-06  Score=65.39  Aligned_cols=74  Identities=16%  Similarity=0.139  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHH-HHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWS-GTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~-~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      .++...+..++....++...+++|.|++. +|+++.+...+..... +...++.+++|+++|| +|||+.+..+.++
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~  284 (356)
T TIGR00901       210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQP-LNILYALLLFGIV  284 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHH
Confidence            35555555566678888888999999987 8999999877776555 5677899999999999 5999998877764

>TIGR00895 2A0115 benzoate transport

Probab=98.40  E-value=2.9e-06  Score=64.14  Aligned_cols=77  Identities=10%  Similarity=0.186  Sum_probs=57.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           35 GWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      +++.+...+...+......+....++|. +.+++|.+..+...+.....+...++.+++|+++|| +|||+++..+.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~   91 (398)
T TIGR00895        15 QWRAIILSFLIMLMDGYDLAAMGFAAPA-ISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADR-IGRKRVLLWSILL   91 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHH-HhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHH-hhhHHHHHHHHHH
Confidence            3454555555555554445444444444 455799999999999999999999999999999999 5999999887754

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.39  E-value=1.7e-06  Score=66.94  Aligned_cols=78  Identities=13%  Similarity=0.166  Sum_probs=60.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637           35 GWKSALFIIGVEMAERFAFCGTGSNLITY--LTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~y--l~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      +.+.++..+.+...+...++....+.|.+  +.+++|.++.+.......+.+...++.++.|+++|| +||||++..+.+
T Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~   86 (406)
T PRK15402          8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDR-IGRRPVMLAGVA   86 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHH
Confidence            45666666666666666555555555444  336799999999999999999999999999999999 599999988765


Q ss_pred             H
Q 048637          113 F  113 (116)
Q Consensus       113 l  113 (116)
                      +
T Consensus        87 ~   87 (406)
T PRK15402         87 F   87 (406)
T ss_pred             H
Confidence            4

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.39  E-value=4.5e-07  Score=75.97  Aligned_cols=63  Identities=29%  Similarity=0.534  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           52 AFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        52 ~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      +||++.+.+..|+++.+|++.+.+..+...+....++.++++|+++|+++||++++.++++++
T Consensus         2 syYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~   64 (654)
T TIGR00926         2 SYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVY   64 (654)
T ss_pred             ceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            689999999999999999999999999999999999999999999999999999999988764

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.38  E-value=2.2e-06  Score=64.83  Aligned_cols=65  Identities=15%  Similarity=0.016  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHH
Q 048637           45 VEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLL  110 (116)
Q Consensus        45 ~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~  110 (116)
                      ..+....+......++|.|+++++|.+..+...+...+.+...+..++.|+++|| +||||.++..
T Consensus         5 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~   69 (375)
T TIGR00899         5 VAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDY-QGDRKGLILF   69 (375)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHH
Confidence            3455566677777889999999999999999999999999999999999999999 5998876543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.38  E-value=3e-06  Score=65.73  Aligned_cols=80  Identities=13%  Similarity=0.006  Sum_probs=59.3

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637           33 SGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      +.+++.++...+..+......+. ..++..++.+++|.++.+.......+.+...++.+++|+++|| +|||+++..+.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr-~g~r~~l~~~~~   91 (426)
T PRK12307         14 RPQKNALFSAWLGYVFDGFDFML-IFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADK-FGRKPLMMWSIV   91 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHH
Confidence            34445555444444444444443 3444455667899999999999999999999999999999999 599999998876


Q ss_pred             HH
Q 048637          113 FM  114 (116)
Q Consensus       113 l~  114 (116)
                      +.
T Consensus        92 ~~   93 (426)
T PRK12307         92 AY   93 (426)
T ss_pred             HH
Confidence            53

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.38  E-value=4.3e-06  Score=64.84  Aligned_cols=85  Identities=12%  Similarity=0.044  Sum_probs=59.7

Q ss_pred             CCCcccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHh-hhhhHHHHhhhcccc
Q 048637           24 RGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQ-LLPLLGAFVGDSFLG  102 (116)
Q Consensus        24 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~-~~~~~~G~LaDr~iG  102 (116)
                      |..|.....+...++....+...+...........+++.|+++++|.++++.....+.+..... +.++++|+ +|| +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr-~g   79 (393)
T PRK15011          2 HNSPAVSSAKSFDLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDK-RG   79 (393)
T ss_pred             CCCcccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc-cc
Confidence            3445444444444455555566777777877888899999999999999999888766555444 45566666 999 59


Q ss_pred             hHHHHHHH
Q 048637          103 RYQTIFLL  110 (116)
Q Consensus       103 Rr~~i~~~  110 (116)
                      |||.++..
T Consensus        80 ~r~~~~~~   87 (393)
T PRK15011         80 DRKSLIVF   87 (393)
T ss_pred             chhHHHHH
Confidence            99875443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.36  E-value=4.3e-06  Score=67.64  Aligned_cols=96  Identities=14%  Similarity=0.089  Sum_probs=79.1

Q ss_pred             cchhhhhhhcccccCCcccccCCCcccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHH
Q 048637            3 ISDTETLMLQRQDTVDDCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKW   82 (116)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~   82 (116)
                      ||++|--.-+.+-+++....-+..|-++.+++  .+++.++...++++.+++.+..|+|+|+++++|++..+......+=
T Consensus       226 is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts--~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP  303 (466)
T KOG2532|consen  226 ISEKELKYIEKGKSEAHVKKKPPVPYKAILTS--PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALP  303 (466)
T ss_pred             CCHHHHHHHHhcccccccCCCCCCCHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHH
Confidence            56666666666655433222256677777776  4678888889999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhHHHHhhhcc
Q 048637           83 SGTSQLLPLLGAFVGDSF  100 (116)
Q Consensus        83 ~~~~~~~~~~~G~LaDr~  100 (116)
                      .+++.+..+++|++|||.
T Consensus       304 ~l~~~~~k~~~g~lsD~l  321 (466)
T KOG2532|consen  304 FLAMAIVKFVAGQLSDRL  321 (466)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999999995

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.36  E-value=2.5e-06  Score=69.04  Aligned_cols=72  Identities=11%  Similarity=0.096  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           39 ALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        39 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      .|...++.++...+|.++..++|.|++..  ++.........+..++..+..|++|+|||| +|++|++.++.+.
T Consensus       254 ~Wllslly~~tFG~fvg~s~~lp~~~~~~--~~~~~~l~~~~l~~l~~~l~rplgG~LADR-iG~~~vl~~~~i~  325 (462)
T PRK15034        254 LWLLSLLYLATFGSFIGFSAGFAMLAKTQ--FPDVNILRLAFFGPFIGAIARSVGGAISDK-FGGVRVTLINFIF  325 (462)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--cChHHHHHHHHHHHHHHHHHHHhhHHHHHh-cCchHHHHHHHHH
Confidence            45566666666667777777999998874  455555555667788889999999999999 5999999888764

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.35  E-value=3.2e-06  Score=65.13  Aligned_cols=79  Identities=15%  Similarity=0.063  Sum_probs=64.0

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637           33 SGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      |.+|..+.......+.+....+......|.+. +++|.++.+...+.....+...++.++.|+++|| +|||+++..+.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~   88 (406)
T PRK11551         11 SRLALTIGLCFLVALLEGLDLQSAGVAAPRMA-QEFGLDVAQMGWAFSAGILGLLPGALLGGRLADR-IGRKRILIVSVA   88 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHH
Confidence            35566666666677777776766666666665 5699999999999999999999999999999999 599999998875


Q ss_pred             H
Q 048637          113 F  113 (116)
Q Consensus       113 l  113 (116)
                      +
T Consensus        89 ~   89 (406)
T PRK11551         89 L   89 (406)
T ss_pred             H
Confidence            4

>PRK10133 L-fucose transporter; Provisional

Probab=98.33  E-value=5e-06  Score=66.00  Aligned_cols=80  Identities=9%  Similarity=-0.034  Sum_probs=65.7

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637           33 SGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      +++..++.....+.+............+|.+ ++.+|.+..+.......+.+...++.++.|+++|| +|||+++..+.+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr-~G~r~~l~~g~~   99 (438)
T PRK10133         22 RSYIIPFALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLF   99 (438)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHH
Confidence            4455566666666666666666666777776 77899999999999999999999999999999999 599999999886


Q ss_pred             HH
Q 048637          113 FM  114 (116)
Q Consensus       113 l~  114 (116)
                      +.
T Consensus       100 ~~  101 (438)
T PRK10133        100 LY  101 (438)
T ss_pred             HH
Confidence            54

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.33  E-value=2.1e-06  Score=67.88  Aligned_cols=52  Identities=15%  Similarity=0.054  Sum_probs=45.5

Q ss_pred             HHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           60 LITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        60 l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      ...|+.+. |++..+...+...+.+...++.+++|+++|| +|||++++.+.++
T Consensus        51 ~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr-~g~k~~l~~~~~~  102 (452)
T PRK11273         51 AMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLIL  102 (452)
T ss_pred             hhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhc-cCCchhHHHHHHH
Confidence            33466666 9999999999999999999999999999999 5999999888754

>PRK03699 putative transporter; Provisional

Probab=98.33  E-value=4.8e-06  Score=64.51  Aligned_cols=78  Identities=6%  Similarity=-0.054  Sum_probs=62.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           34 GGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      +++|-.+.+.+..+......+.....+|... +++|+++.+...+.....+...++.+++|+++|| +|||+++..+.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~-~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~g~r~~~~~~~~~   81 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGPIA-EYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEI-IPLKRQLIFGFAL   81 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHH
Confidence            4556666666666666666666666677755 5799999999999999999999999999999999 5999999887754

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.29  E-value=8.7e-06  Score=62.49  Aligned_cols=74  Identities=16%  Similarity=-0.055  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHH-----HHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637           38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATA-----AQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a-----~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      .........++....++....++|.|.++ +|.+..+.     ..+..+..+...++.++.|+++|| +|||+++..+.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~   92 (408)
T PRK09874         15 NLTVAWLGCFLTGAAFSLVMPFLPLYVEQ-LGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADR-KGRKIMLLRSAL   92 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHH-hCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hCcHHHHHHHHH
Confidence            34444445566667777777889999864 88886553     556677778888899999999999 599999998775


Q ss_pred             H
Q 048637          113 F  113 (116)
Q Consensus       113 l  113 (116)
                      +
T Consensus        93 ~   93 (408)
T PRK09874         93 G   93 (408)
T ss_pred             H
Confidence            4

>PRK11043 putative transporter; Provisional

Probab=98.29  E-value=5.4e-06  Score=64.01  Aligned_cols=64  Identities=19%  Similarity=0.212  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHHH--hccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           49 ERFAFCGTGSNLITY--LTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        49 ~~~~~y~~~~~l~~y--l~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      ....++....++|.+  +.+++|.++.+......++.+...++.+++|+++|| +|||+++..+.++
T Consensus        15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~   80 (401)
T PRK11043         15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDR-YGRKPVLLAGLSL   80 (401)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhh-cCCcHHHHHHHHH
Confidence            444556666777776  667899999999999999999999999999999999 5999999887654

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.28  E-value=8.7e-06  Score=60.90  Aligned_cols=68  Identities=18%  Similarity=-0.020  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHH
Q 048637           37 KSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQ  105 (116)
Q Consensus        37 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~  105 (116)
                      +.++......++....++....++|.|+++.+|.++.++........+...++.+++|+++|| +|||+
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~  282 (399)
T TIGR00893       215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDL-LLRRG  282 (399)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHH-Hhhcc
Confidence            345555566667777788888899999999999999999988889999999999999999999 59996

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.27  E-value=5.7e-06  Score=62.72  Aligned_cols=77  Identities=13%  Similarity=0.037  Sum_probs=58.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           35 GWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      +++.++...+...............+|.+ .+++|.+..+...+.....+...++.++.|+++|| +|||+++..+.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~   79 (385)
T TIGR00710         3 AKAFALLLGCLSILGPLGIDMYLPAFPEI-AADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDR-YGRRPVLLLGLFI   79 (385)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhcccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHH
Confidence            44445555455555555554444455554 45799999999999999999999999999999999 5999999887754

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00896 CynX cyanate transporter

Probab=98.27  E-value=1.7e-05  Score=60.24  Aligned_cols=71  Identities=15%  Similarity=-0.023  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccc-hHHHHHHHH
Q 048637           39 ALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLG-RYQTIFLLL  111 (116)
Q Consensus        39 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iG-Rr~~i~~~~  111 (116)
                      .+.......+....++....++|.|+++ .|++..++........+...++.++.|+++|| +| ||+.+..+.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr-~~~~~~~~~~~~  270 (355)
T TIGR00896       199 AWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARR-VKDQRGIVAVLA  270 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhh-hccchHHHHHHH
Confidence            3444444455666778888899999975 69999999999999999999999999999999 65 555555543

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK03545 putative arabinose transporter; Provisional

Probab=98.27  E-value=8.7e-06  Score=62.81  Aligned_cols=73  Identities=10%  Similarity=0.021  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           39 ALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        39 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      ++.............|.....+|. +.+++|.++.+.......+.+...++.++.|+++|| +||||++..+.++
T Consensus        11 ~~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~   83 (390)
T PRK03545         11 VVTLALAAFIFNTTEFVPVGLLSD-IAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSN-VERRKLLIGLFVL   83 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHcchHH-HHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChHHHHHHHHHH
Confidence            344333334433444444344555 455799999999999999999999999999999999 5999999888654

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.26  E-value=2.1e-06  Score=64.29  Aligned_cols=61  Identities=11%  Similarity=-0.036  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           52 AFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        52 ~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      ..|....+ ..++.+++|.+..+...+...+.+...++.+++|+++|| +|||+++..+.++.
T Consensus        18 ~~~~~~~~-~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~-~G~r~~~~~~~~~~   78 (377)
T TIGR00890        18 YVYTWTLL-APPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADK-FGPRAVAMLGGILY   78 (377)
T ss_pred             HHhhhhhH-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-cCccchhHHhHHHH
Confidence            34544444 455566899999999999999999999999999999999 59999999887653

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.26  E-value=2.6e-06  Score=72.33  Aligned_cols=55  Identities=13%  Similarity=0.004  Sum_probs=46.9

Q ss_pred             HHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           58 SNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        58 ~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      .+....+...+|++..+...+...+.+...++.+++|+++|| +|||++++++.++
T Consensus       187 s~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR-~GRR~~lii~lil  241 (742)
T TIGR01299       187 GFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADK-LGRKQCLLICLSV  241 (742)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHH
Confidence            344445566799999999999999999999999999999999 5999999988754

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.25  E-value=5.4e-06  Score=65.44  Aligned_cols=75  Identities=12%  Similarity=0.034  Sum_probs=60.8

Q ss_pred             cccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchH
Q 048637           27 PVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRY  104 (116)
Q Consensus        27 p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr  104 (116)
                      |.++.+++  +.++......++....++.+..|+|.|+++.+|++..++........+...++.+++|+++|| +++|
T Consensus       253 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~-~~~~  327 (465)
T TIGR00894       253 PIKAIPKS--LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADF-LKSS  327 (465)
T ss_pred             CHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHc
Confidence            44444433  345666667778888888889999999999999999999988888889999999999999999 4654

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.25  E-value=4.8e-06  Score=62.91  Aligned_cols=72  Identities=21%  Similarity=0.235  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637           40 LFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        40 ~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      +......++....++....++|.|+++.+|+++.++........+...++.+++|+++|| +|||+.+..+.+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~  299 (366)
T TIGR00886       228 WILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDR-LGGARKLLMSFL  299 (366)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHh-hccchhHHHHHH
Confidence            333334444455667788899999999999999999988888888899999999999999 599887765543

>TIGR00897 2A0118 polyol permease family

Probab=98.25  E-value=9.8e-06  Score=63.02  Aligned_cols=69  Identities=23%  Similarity=0.219  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHH
Q 048637           38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIF  108 (116)
Q Consensus        38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~  108 (116)
                      .++......++....+++...++|.|+++ +|++..++........+...++.++.|+++|| +|||+.+.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~  291 (402)
T TIGR00897       223 NVLLGGMVRIINTIGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDK-LGWMNTVR  291 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHH
Confidence            34555555667778888999999999864 89999998888888889999999999999999 59888764

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.23  E-value=8.9e-06  Score=65.25  Aligned_cols=74  Identities=14%  Similarity=-0.050  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           39 ALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        39 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      +.......++....+++...++|.|++...|+++.++........+...++.+++|++.|| +|+|+.+..+.++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~g~~~  334 (495)
T PRK14995        261 ILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSR-LGLRLVATGGMAL  334 (495)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHH
Confidence            3444455555566677778899999999999999999999999999999999999999999 5999998877654

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.21  E-value=2.2e-06  Score=67.48  Aligned_cols=53  Identities=15%  Similarity=0.031  Sum_probs=44.8

Q ss_pred             HHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           59 NLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        59 ~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      +...++++ .|+++.+.......+.+...++.+++|+++|| +|||+++..+.++
T Consensus        48 ~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~~~~~~~~~~~  100 (438)
T TIGR00712        48 LAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDR-SNPRVFLPAGLIL  100 (438)
T ss_pred             hhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhc-cCCceehHHHHHH
Confidence            33445555 59999999999999999999999999999999 5999998877654

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.20  E-value=8.2e-06  Score=60.28  Aligned_cols=71  Identities=21%  Similarity=0.195  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           42 IIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        42 ~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      .....+......+......|.|.+ +.|.+..+.........+...++.++.|+++|| +|||+.+..+.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~-~g~r~~~~~~~~~~   74 (352)
T cd06174           4 LFLGFFLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR-FGRRRVLLLGLLLF   74 (352)
T ss_pred             HHHHHHHHHHhhhhhHhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCCchhhHHHHHHH
Confidence            334456667777777788888876 479999999999999999999999999999999 59999998887653

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.19  E-value=4.6e-06  Score=67.84  Aligned_cols=90  Identities=19%  Similarity=0.127  Sum_probs=72.2

Q ss_pred             CCCccccccc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhccc
Q 048637           24 RGRPVHRANS--GGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFL  101 (116)
Q Consensus        24 ~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~i  101 (116)
                      ++.+++++++  ++++++..++.+.+++....--...++.+.+....|++..++..++.....+..+..+++.++-|| +
T Consensus       254 ~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~-~  332 (485)
T KOG0569|consen  254 KQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDR-L  332 (485)
T ss_pred             cCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c
Confidence            4556777775  446777777777777776544445556666666799999999999999999999999999999999 5


Q ss_pred             chHHHHHHHHHHH
Q 048637          102 GRYQTIFLLLLFM  114 (116)
Q Consensus       102 GRr~~i~~~~il~  114 (116)
                      |||+.++.+..++
T Consensus       333 gRRpLll~~~~~~  345 (485)
T KOG0569|consen  333 GRRPLLLISLSLM  345 (485)
T ss_pred             CCcHHHHHHHHHH
Confidence            9999999988754

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.18  E-value=7.8e-06  Score=61.06  Aligned_cols=65  Identities=14%  Similarity=0.008  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           47 MAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        47 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      +............+|.|..+ .+.+..+...+.....+...++.++.|+++|| +||||++..+.++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~~~~~~~~   73 (365)
T TIGR00900         9 LISLIGTAITQVALPLYVLA-GTGSASVLSLAALAGMLPYVVLSPIAGALADR-YDRKKVMIGADLI   73 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHh-hchhHHHHHHHHH
Confidence            34444444555667777764 79999999999999999999999999999999 5999999887654

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.17  E-value=2.3e-05  Score=61.61  Aligned_cols=67  Identities=16%  Similarity=0.083  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhccccC---CChHHHH---HHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           46 EMAERFAFCGTGSNLITYLTGPLG---QSTATAA---QNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        46 ~~~~~~~~y~~~~~l~~yl~~~lg---~~~~~a~---~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      .+.+..-... ..+...++.++++   .+..+..   .+.....+...++.+++|+++|| +||||++..+.++.
T Consensus        31 ~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr-~Grr~~l~~~~~~~  103 (432)
T PRK10406         31 NLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADK-HGRKKSMLISVCMM  103 (432)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHH
Confidence            3444444433 4455556666663   4444322   23334444455888999999999 59999998887654

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.17  E-value=1.9e-05  Score=61.26  Aligned_cols=60  Identities=23%  Similarity=0.155  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           52 AFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        52 ~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      ..+.+..++|.|++. .|+++.+.........++..++.+++|+++|| +|||+++..+.++
T Consensus       246 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~~~~~~~  305 (426)
T PRK12307        246 ANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADR-IGLKKTFSIGLLM  305 (426)
T ss_pred             HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHH
Confidence            444567789999876 59999888888888888899999999999999 5999998877643

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.14  E-value=2.2e-05  Score=61.83  Aligned_cols=75  Identities=16%  Similarity=0.091  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      +++......+.....+......+|.+ ++++|++..++..+.....+...++.+++|+++|| +|||+++..+.++.
T Consensus         4 ~~~~~~~~f~~~G~~~~~~~~l~~~~-~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r-~G~r~~~~~g~~l~   78 (410)
T TIGR00885         4 PFALITSLFALWGFANDITNPMVPQF-QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKK-LSYKAGILLGLFLY   78 (410)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHH
Confidence            34444444454455544444556555 67899999999999999999999999999999999 59999999888654

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.14  E-value=2.7e-05  Score=58.91  Aligned_cols=59  Identities=17%  Similarity=0.130  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637           53 FCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        53 ~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      ......++|.|+++++|.++.++........+...++.+++|+++|| +|||+++..+.+
T Consensus       215 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~  273 (375)
T TIGR00899       215 NILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKR-FGKRRLMLLAAL  273 (375)
T ss_pred             HHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchhHHHHHHH
Confidence            34455678999988899999988877777777777788999999999 599998877654

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00889 2A0110 nucleoside transporter

Probab=98.14  E-value=2.3e-05  Score=61.78  Aligned_cols=70  Identities=14%  Similarity=0.091  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccch-HHHHHHHHH
Q 048637           42 IIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGR-YQTIFLLLL  112 (116)
Q Consensus        42 ~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGR-r~~i~~~~i  112 (116)
                      ..+..+.....+-....+++.|+++++|++..+...+.....+...++.+++|+++|| +|| |+++.++.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr-~g~~r~~~~~~~~   77 (418)
T TIGR00889         7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADK-WLSAQKVYAVCHF   77 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHH
Confidence            3444455566666777899999999999999999999999999999999999999999 576 666665544

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.13  E-value=1.6e-05  Score=64.58  Aligned_cols=73  Identities=21%  Similarity=0.146  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhh----cccchHHHHHHHHH
Q 048637           38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGD----SFLGRYQTIFLLLL  112 (116)
Q Consensus        38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaD----r~iGRr~~i~~~~i  112 (116)
                      .++....+.+.-.+.+-....+++.|+ +.+|.++..+..+..+..+...+..|+.|++||    | +||||.++.+..
T Consensus         5 ~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr-~GRRrp~il~g~   81 (477)
T TIGR01301         5 KLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSR-FGRRRPFIAAGA   81 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCC-CCChHHHHHHHH
Confidence            345555555555666666666777776 469999999999999999999999999999999    6 599999987643

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.13  E-value=1.7e-05  Score=59.32  Aligned_cols=65  Identities=14%  Similarity=-0.039  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           47 MAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        47 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      ++..........+.+.|.+ ++|.+..+.........+...++.+++|+++|| +|||+.+.++.++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~  279 (377)
T TIGR00890       215 FLNAVSGLLLIGLYKPYGQ-SLGLSDGFLVLAVSISSIFNGGGRPFLGALSDK-IGRQKTMSIVFGI  279 (377)
T ss_pred             HHHhHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHH
Confidence            3334444445556666754 588998888888888899999999999999999 5999998776653

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.12  E-value=2.3e-05  Score=61.42  Aligned_cols=68  Identities=9%  Similarity=-0.111  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHH
Q 048637           38 SALFIIGVEMAERFAFCGTGSNLITYLTG-PLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQT  106 (116)
Q Consensus        38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~-~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~  106 (116)
                      .++......++....++.+..|+|.|+++ ..|++..++........+...++.+++|+++|| +|||+.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr-~~~r~~  311 (412)
T TIGR02332       243 AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDR-LKERKH  311 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcc-cCccHH
Confidence            34555566677778888999999999987 357888888888888889999999999999999 597774

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.12  E-value=4.4e-06  Score=66.96  Aligned_cols=67  Identities=19%  Similarity=0.158  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccccCCChHHHHH------------HHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637           45 VEMAERFAFCGTGSNLITYLTGPLGQSTATAAQ------------NANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        45 ~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~------------~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      ..++....+|+...++|++++ .+|++..++..            ...+..+...++.+++|+++|| +|||++++++.+
T Consensus       296 ~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr-~gRR~~l~~~~~  373 (502)
T TIGR00887       296 SWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDI-IGRKPIQLMGFF  373 (502)
T ss_pred             HHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcchhHHHHHHH
Confidence            334556688888889999996 57886543211            1223334455577889999999 599999887765


Q ss_pred             H
Q 048637          113 F  113 (116)
Q Consensus       113 l  113 (116)
                      +
T Consensus       374 ~  374 (502)
T TIGR00887       374 I  374 (502)
T ss_pred             H
Confidence            4

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.11  E-value=2.2e-05  Score=62.05  Aligned_cols=67  Identities=13%  Similarity=0.003  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhccc--chHH
Q 048637           38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFL--GRYQ  105 (116)
Q Consensus        38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~i--GRr~  105 (116)
                      .++...+...+.....|+...|+|.|++++.|++..++........+...++.+++|+++|| +  |||+
T Consensus       254 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr-~~~~r~~  322 (452)
T PRK11273        254 LLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRG  322 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCcc
Confidence            34555555556666778888999999999899999888888888888888899999999999 6  4443

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.11  E-value=2.1e-05  Score=62.27  Aligned_cols=57  Identities=28%  Similarity=0.225  Sum_probs=50.9

Q ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637           55 GTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        55 ~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      ....++|.|++..+|++..++........+...++.+++|+++|| +|||+++..+.+
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~  349 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDW-LGTRKAYVCSLL  349 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHH
Confidence            356789999988899999999999999999999999999999999 599999887654

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.11  E-value=1.2e-05  Score=62.49  Aligned_cols=87  Identities=11%  Similarity=0.023  Sum_probs=75.6

Q ss_pred             CcccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHH
Q 048637           26 RPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQ  105 (116)
Q Consensus        26 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~  105 (116)
                      .|-.+-++.+.-++|....+..+..+..+.+.+.-|.|+++..|+++..+..+.....+.+.+..|+.|.++||+ |++-
T Consensus       253 ~pkLtdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~  331 (459)
T KOG4686|consen  253 EPKLTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNL  331 (459)
T ss_pred             CcccccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-ccee
Confidence            455555677777889999898888888888888899999999999999999999999999999999999999996 9988


Q ss_pred             HHHHHHHH
Q 048637          106 TIFLLLLF  113 (116)
Q Consensus       106 ~i~~~~il  113 (116)
                      ..+.++.+
T Consensus       332 ~wv~~a~~  339 (459)
T KOG4686|consen  332 WWVASACI  339 (459)
T ss_pred             hhHHHHHH
Confidence            77766544

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.10  E-value=1.7e-05  Score=61.75  Aligned_cols=49  Identities=10%  Similarity=-0.044  Sum_probs=43.5

Q ss_pred             ccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           65 TGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        65 ~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      ..++|.+..+...+...+.+...++.|++|+++|| +||||++.++.++.
T Consensus        30 ~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr-~grr~vl~~~~~~~   78 (393)
T PRK11195         30 LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADS-FPKGRVMFIANGIK   78 (393)
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhc-cCCchhhHHHHHHH
Confidence            46789999999999999999999999999999999 59999999887643

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.10  E-value=2.3e-05  Score=61.71  Aligned_cols=63  Identities=16%  Similarity=0.068  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           50 RFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        50 ~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      ....+....++|.+.+ ++|++..+...+...+.+...++.+++|+++|| +|||+++.++.++.
T Consensus        36 ~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~~~~~~~~~   98 (434)
T PRK11663         36 YFTRKSFNAAMPEMLA-DLGLSRSDIGLLATLFYITYGVSKFVSGIVSDR-SNARYFMGIGLIAT   98 (434)
T ss_pred             HHhhhhHHHhhHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhh-cCCchhHHHHHHHH
Confidence            3333455566776665 599999999999999999999999999999999 59999998877653

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.10  E-value=2.7e-05  Score=59.92  Aligned_cols=69  Identities=12%  Similarity=-0.034  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           43 IGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        43 ~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      +...+....++......+|.+.. ++|.++.+.......+.+...++.++.|+++|| +|||+++..+.++
T Consensus         9 ~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~   77 (392)
T PRK10473          9 FALVLLYPAGIDMYLVGLPRIAA-DLNASEAQLHIAFSVYLAGMAAAMLFAGKIADR-SGRKPVAIPGAAL   77 (392)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHH-hCChHHHHHHHHH
Confidence            34445555555555566776654 589999999999999999999999999999999 5999999988754

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.09  E-value=3.5e-05  Score=59.94  Aligned_cols=72  Identities=11%  Similarity=-0.024  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           40 LFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        40 ~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      +.......+....+++...++|.|+.+ .|++..++........+...++.++.|+++|| +|||+.++.+.++
T Consensus       208 ~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r-~~~~~~~~~~~~l  279 (393)
T PRK09705        208 WTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARH-QDRRKLLMLALVL  279 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHH
Confidence            333334445567788888999999986 79999999999999999999999999999999 5999988776543

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.09  E-value=2.6e-05  Score=60.18  Aligned_cols=75  Identities=12%  Similarity=0.030  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      .++......++.....+.....+|.+. +++|.+..+.........+...++.+++|+++|| +|||+++..+.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~   78 (382)
T PRK10091          4 VILSLALGTFGLGMAEFGIMGVLTELA-HDVGISIPAAGHMISYYALGVVVGAPIIALFSSR-YSLKHILLFLVALC   78 (382)
T ss_pred             hHHHHHHHHHHHHhhHHHHHhChHHHH-HHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHcc-CccHHHHHHHHHHH
Confidence            444445555555666666666777654 5799999999999999999999999999999999 59999999887653

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.09  E-value=3.3e-05  Score=58.54  Aligned_cols=66  Identities=12%  Similarity=-0.145  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637           46 EMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        46 ~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      .......++....+.|.|++++.|.++.++........+...++.+++|+++|| +|||+.+..+.+
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~  280 (385)
T TIGR00710       215 YGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKK-WGAKSLLRMGLI  280 (385)
T ss_pred             HHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHH
Confidence            334455666777788999988899999999988888888999999999999999 599998876654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.08  E-value=4.9e-05  Score=58.72  Aligned_cols=74  Identities=7%  Similarity=-0.088  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           39 ALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        39 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      ++......++....++...++.|.|+++ .|.++.+.........+...+..+++|++.|| +|.|+++.++.+..
T Consensus       207 ~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r-~g~~~~l~~~~~~~  280 (382)
T TIGR00902       207 NLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQN-CSARDLLLISAIAC  280 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhh-CCHHHHHHHHHHHH
Confidence            4444444455566677788899999975 89999999988888888888899999999999 59999999887754

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.08  E-value=3.5e-05  Score=59.41  Aligned_cols=65  Identities=18%  Similarity=0.080  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637           46 EMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        46 ~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      .++....++....++|.|++. .|++..++........+...++.++.|+++|| +|||+.+..+.+
T Consensus       229 ~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~  293 (406)
T PRK11551        229 YFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDR-LRPRRVVLLIYA  293 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHH
Confidence            344455667777889999976 79999999999989999999999999999999 599999876543

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.08  E-value=2.9e-05  Score=60.97  Aligned_cols=49  Identities=14%  Similarity=0.169  Sum_probs=43.6

Q ss_pred             hccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           64 LTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        64 l~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      +.+.+|.+..++.....++.+...++.+++|+++|| +|||+++..+.++
T Consensus        42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~   90 (413)
T PRK15403         42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDR-IGRRPVLITGALI   90 (413)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHH-cCchHHHHHHHHH
Confidence            345689999999999999999999999999999999 5999999888654

>PRK10133 L-fucose transporter; Provisional

Probab=98.08  E-value=4.5e-05  Score=60.59  Aligned_cols=67  Identities=15%  Similarity=0.019  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHHHHHHh-ccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           46 EMAERFAFCGTGSNLITYL-TGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        46 ~~~~~~~~y~~~~~l~~yl-~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      .++.....+....|++.|+ ++..|+++.++......+.+...++.+++|+++|| +|||+++..+.++
T Consensus       267 ~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r-~g~~~~l~~~~~~  334 (438)
T PRK10133        267 QFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALI  334 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHH
Confidence            3444556666677889896 56789999999999999999999999999999999 5999998877644

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.07  E-value=2.5e-05  Score=62.90  Aligned_cols=65  Identities=11%  Similarity=0.075  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHHHHHhccccCCChHHHHHHH-HHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637           47 MAERFAFCGTGSNLITYLTGPLGQSTATAAQNA-NKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        47 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~-~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      .+.....+....+.+.|+.++.|++..+..... ....+...++.+++|+++|| +||||.+.++.+
T Consensus       232 ~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr-~g~~~~l~i~~~  297 (491)
T PRK11010        232 VLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQR-LSLFRALMIFGI  297 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHH
Confidence            344455555667788898878999999999887 45667888999999999999 599988776554

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.07  E-value=3.6e-05  Score=60.47  Aligned_cols=66  Identities=11%  Similarity=0.112  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           47 MAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        47 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      +............+|.+. +.+|.+..+...+...+.+...++.+++|+++|| +|||+++..+.++.
T Consensus        12 ~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~   77 (485)
T TIGR00711        12 FMAVLDSTIVNVAIPTIA-GDLGSSLSQVQWVITSYMLANAISIPLTGWLAKR-FGTRRLFLISTFAF   77 (485)
T ss_pred             HHHHHHHHHHHHHHHHHH-HhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHH-hCcHHHHHHHHHHH
Confidence            333444444545566554 5699999999999999999999999999999999 59999999887653

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.06  E-value=8.5e-06  Score=62.68  Aligned_cols=43  Identities=14%  Similarity=0.266  Sum_probs=38.4

Q ss_pred             CChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           70 QSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        70 ~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      .+..+...+...+.+...++.+++|+++|| +|||+++..+.++
T Consensus        68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~  110 (481)
T TIGR00879        68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDR-FGRKKSLLIIALL  110 (481)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhHhhhh-hhhHHHHHHHHHH
Confidence            448999999999999999999999999999 5999999887754

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.05  E-value=4.9e-05  Score=56.13  Aligned_cols=75  Identities=28%  Similarity=0.330  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHH-HHHHHHHH
Q 048637           38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQ-TIFLLLLF  113 (116)
Q Consensus        38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~-~i~~~~il  113 (116)
                      .++......++..........+.|.|..+..|.+..+.........+...++.++.|+++|| +|||+ .+..+.++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~  251 (352)
T cd06174         176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDR-LGRRRLLLLIGLLL  251 (352)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHH
Confidence            34444455566667777788889999988889999999999999999999999999999999 59999 77766654

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR01272 gluP glucose/galactose transporter

Probab=98.05  E-value=7.4e-05  Score=56.93  Aligned_cols=74  Identities=16%  Similarity=0.086  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           39 ALFIIGVEMAERFAFCGTGSNLITYLTG--PLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        39 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~--~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      .+++....++....--+...|+++|+.+  .+|+++.++......+.+...++-+++++++|| +|++|++.++.++
T Consensus       142 ~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r-~g~~~~l~~~~~l  217 (310)
T TIGR01272       142 LVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPM-ISQGRYLAFNAFL  217 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHH
Confidence            4444444444444455677899999974  479999999999999999999999999999999 5999998877653

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.05  E-value=2.8e-05  Score=62.10  Aligned_cols=74  Identities=15%  Similarity=0.020  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637           37 KSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        37 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      |++...++..++.....+....+.+.|.+..++ ++........+..+...++.++.++++|| +|+|++++++.+
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gkk~~~~~~~~  304 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKS-LSRRILWAGASI  304 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHH
Confidence            666666677777777888777777766666555 44445555556667778888999999999 599999876654

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.04  E-value=4.5e-05  Score=58.04  Aligned_cols=66  Identities=6%  Similarity=-0.178  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637           46 EMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        46 ~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      ........+....+.|.++.++.|+++.+.........++..++.+++|+++|| +|||+++..+.+
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~  268 (377)
T PRK11102        203 SGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRR-VGALNMLRFGLW  268 (377)
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHH
Confidence            334444455566677788888899999999999999999999999999999999 599998887664

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.04  E-value=3.7e-05  Score=61.14  Aligned_cols=56  Identities=5%  Similarity=-0.091  Sum_probs=46.3

Q ss_pred             HHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           56 TGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        56 ~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      +..+++.+ ...+|.+..+.....+.+.....++.+++|+++|| +|||++++.+.++
T Consensus        38 ~~~~~~~i-~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~   93 (455)
T TIGR00892        38 VTVFFKEL-QQIFQATYSETAWISSIMLAVLYAGGPISSILVNR-FGCRPVVIAGGLL   93 (455)
T ss_pred             hhhhHHHH-HHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH-cCchHHHHhhHHH
Confidence            44445544 45799999999999999988889999999999999 5999999987754

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.02  E-value=2.8e-05  Score=61.84  Aligned_cols=75  Identities=15%  Similarity=0.119  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           37 KSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        37 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      ..++....+.++...+.|..++|+--|+++..|++......+...+.+...++.+++|+++||  +.++++....++
T Consensus       211 p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l  285 (394)
T COG2814         211 PGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLL  285 (394)
T ss_pred             chHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHH
Confidence            346777777888888999999999999999999999999999999999999999999999999  777777666443

>PRK10504 putative transporter; Provisional

Probab=98.01  E-value=5.6e-05  Score=59.63  Aligned_cols=74  Identities=15%  Similarity=-0.082  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           39 ALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        39 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      +...+...++....+.....+.|.|++...|.++.++........+...++.++.|+++|| +|||+++..+.++
T Consensus       263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~g~~~~~~~~~~~  336 (471)
T PRK10504        263 FSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNR-FGYRRVLVATTLG  336 (471)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHH
Confidence            3444444455555666666778889888899999999888877777777788999999999 5999999877653

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.00  E-value=3.1e-05  Score=60.91  Aligned_cols=66  Identities=12%  Similarity=-0.034  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHH
Q 048637           39 ALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQ  105 (116)
Q Consensus        39 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~  105 (116)
                      ++.......+.....|++..++|.|+++..|++..++........+...++.+++|+++|| +|+++
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~  318 (438)
T TIGR00712       253 LWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFKGN  318 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCc
Confidence            3444444455566678888999999999899999999988888888899999999999999 56543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK09952 shikimate transporter; Provisional

Probab=97.99  E-value=6.3e-05  Score=59.40  Aligned_cols=78  Identities=19%  Similarity=0.151  Sum_probs=45.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CCChHHHHHHH----HHHHHHHhhhhhHHHHhhhcccchHHHHHH
Q 048637           36 WKSALFIIGVEMAERFAFCGTGSNLITYLTGPL--GQSTATAAQNA----NKWSGTSQLLPLLGAFVGDSFLGRYQTIFL  109 (116)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~l--g~~~~~a~~~~----~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~  109 (116)
                      +|.++...+....+..-........|.+..+++  +.++.+.....    ....+...++.+++|+++|| +|||+++..
T Consensus        21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr-~Grr~~l~~   99 (438)
T PRK09952         21 RRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAMGTLAAFATFGVGFLFRPLGGVVFGHFGDR-LGRKRMLML   99 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh-hccHHHHHH
Confidence            444444444445554444444334444555443  56665433221    12334455677889999999 599999998


Q ss_pred             HHHHH
Q 048637          110 LLLFM  114 (116)
Q Consensus       110 ~~il~  114 (116)
                      +.++.
T Consensus       100 ~~~~~  104 (438)
T PRK09952        100 TVWMM  104 (438)
T ss_pred             HHHHH
Confidence            77653

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=97.99  E-value=1.9e-05  Score=58.86  Aligned_cols=70  Identities=23%  Similarity=0.261  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccCCC-hHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637           42 IIGVEMAERFAFCGTGSNLITYLTGPLGQS-TATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        42 ~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~-~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      .+....+....++....++|.|+.+.+|++ ..+......+..+...++.++.|+++|| +|+++.+.....
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~  281 (352)
T PF07690_consen  211 LLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDR-FGRRRRLLIAIL  281 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHH
Confidence            333444445566778889999999999999 7888888889999999999999999999 598776665554

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=97.99  E-value=5.6e-05  Score=60.53  Aligned_cols=56  Identities=16%  Similarity=0.105  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchH
Q 048637           48 AERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRY  104 (116)
Q Consensus        48 ~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr  104 (116)
                      ......+....++|.|+.++.|++..++.....+..++..++.+++|+++|| +|||
T Consensus       263 ~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~~~r  318 (476)
T PLN00028        263 YSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDV-AARR  318 (476)
T ss_pred             HHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHh
Confidence            3344445667789999988899999999999999999999999999999999 5976

>PRK10091 MFS transport protein AraJ; Provisional

Probab=97.98  E-value=5.4e-05  Score=58.39  Aligned_cols=66  Identities=12%  Similarity=-0.084  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           47 MAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        47 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      .+.....+....+++.|+.+..|+++.++........+...++.++.|+++|| +|+|+.+..+.++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r-~~~~~~~~~~~~~  274 (382)
T PRK10091        209 MFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGR-YSPLRIAAVTDFI  274 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccc-cCchhHHHHHHHH
Confidence            33444555556778888888899999999999999999999999999999999 5999988776543

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=97.98  E-value=1.5e-05  Score=61.94  Aligned_cols=65  Identities=15%  Similarity=0.145  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcc---cchHH-HHHHHH
Q 048637           47 MAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSF---LGRYQ-TIFLLL  111 (116)
Q Consensus        47 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~---iGRr~-~i~~~~  111 (116)
                      +..+.....+..|++.|+++++|+++.++..+..+..+...+..|+.|+++||.   +|||| .++.+.
T Consensus         9 ~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~   77 (437)
T TIGR00792         9 FGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGA   77 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhH
Confidence            344556667778999999999999999999999999999999999999999972   48755 454444

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00895 2A0115 benzoate transport

Probab=97.98  E-value=9.1e-05  Score=55.93  Aligned_cols=72  Identities=18%  Similarity=0.109  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHH
Q 048637           37 KSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLL  110 (116)
Q Consensus        37 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~  110 (116)
                      +..+.......+....++....++| ++....|++..++........+...++.+++|+++|| +|||+.+...
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~  321 (398)
T TIGR00895       250 RITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADR-LGPRVTALLL  321 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHH
Confidence            3344444455566677777888888 5556789999999999999999999999999999999 5998655443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=97.97  E-value=6.7e-05  Score=60.21  Aligned_cols=74  Identities=16%  Similarity=0.020  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           39 ALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        39 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      +.......+....-.-++.+-+|... .++|.+..+..++.+.+.+....+.+++|+++|| +|||+++..+.++.
T Consensus         8 ~~~~~~~~~~~~ld~tiv~~a~p~i~-~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~-~Grk~~l~~~~~~~   81 (495)
T PRK14995          8 LVIIVLVYIPVAIDATVLHVAAPTLS-MTLGASGNELLWIIDIYSLVMAGMVLPMGALGDR-IGFKRLLMLGGTLF   81 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHH
Confidence            33333444444444445555677775 4699999999999999999999999999999999 59999999887653

>PF13347 MFS_2: MFS/sugar transport protein

Probab=97.97  E-value=3e-05  Score=60.84  Aligned_cols=76  Identities=16%  Similarity=0.091  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           37 KSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        37 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      |+....++..++..........+.+.|.+..+|.+. ..........+...++.++.++++|| +|+|+++..+.++.
T Consensus       225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~-~~~~~~~~~~~~~~v~~~~~~~l~~r-~gk~~~~~~~~~~~  300 (428)
T PF13347_consen  225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEG-LISIFMLIFFVASIVGSPLWGRLSKR-FGKKKVYIIGLLLA  300 (428)
T ss_pred             chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHHHHHH-ccceeehhhhHHHH
Confidence            455666666677777777777888888888888884 45556667888888899999999999 59999999888654

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=97.96  E-value=2.4e-05  Score=61.57  Aligned_cols=46  Identities=9%  Similarity=0.103  Sum_probs=41.7

Q ss_pred             cCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           68 LGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        68 lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      +|.++.+...+.+.+.+...++.+++|+++|| +||||++..+.++.
T Consensus        50 ~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr-~Grr~~~~~~~~l~   95 (479)
T PRK10077         50 ESAANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLF   95 (479)
T ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHH
Confidence            48899999999999999999999999999999 59999999887654

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=97.93  E-value=4.3e-05  Score=57.24  Aligned_cols=67  Identities=16%  Similarity=0.058  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHH
Q 048637           39 ALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQ  105 (116)
Q Consensus        39 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~  105 (116)
                      ++.............+....++|.|+++..|+++.++........+...++.+++|+++||..+||+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~  284 (379)
T TIGR00881       218 LWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRR  284 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcc
Confidence            4444444455566667788899999999999999999999999999999999999999998423333

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=97.91  E-value=0.00013  Score=56.16  Aligned_cols=58  Identities=12%  Similarity=0.007  Sum_probs=48.8

Q ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           55 GTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        55 ~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      ....+.|.|+..++|+++.+.........+...++.++.|+++|| +|||++++.+.++
T Consensus       221 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r-~g~~~~~~~~~~~  278 (392)
T PRK10473        221 TFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGI-FKPRTLMLTSQVL  278 (392)
T ss_pred             HHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHH
Confidence            344567788888899999988888888888889999999999999 5999999877653

>PRK03545 putative arabinose transporter; Provisional

Probab=97.90  E-value=0.00013  Score=56.36  Aligned_cols=64  Identities=13%  Similarity=0.025  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHH
Q 048637           46 EMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLL  110 (116)
Q Consensus        46 ~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~  110 (116)
                      .++....++....+++.|++++.|++..++........+...++.+++|+++|| +|||+.+...
T Consensus       214 ~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~~~~  277 (390)
T PRK03545        214 TVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNR-HPSGFLLIAI  277 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHHHHH
Confidence            334444556666788889888899999999988888888999999999999999 5988765443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=97.90  E-value=6.6e-05  Score=60.07  Aligned_cols=70  Identities=16%  Similarity=0.029  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHH
Q 048637           38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIF  108 (116)
Q Consensus        38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~  108 (116)
                      +.+..-...+.....+-....|++.|++++.|++.++...+..+..+...+..|+.|.++|| +|.||.++
T Consensus         8 ~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dk-lg~kK~Ll   77 (412)
T PF01306_consen    8 NYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDK-LGLKKHLL   77 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHH-CTTCSHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcch-hhhhHHHH
Confidence            44444444444455556677889999999999999999999999999999999999999999 59666544

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=97.89  E-value=5.4e-05  Score=58.86  Aligned_cols=61  Identities=20%  Similarity=0.165  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           52 AFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        52 ~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      .++.....+|... +++|.+..+.....+.+.+...++.+++|+++|| +|||+++..+.++.
T Consensus        24 ~~~~~~~~lp~i~-~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr-~G~r~~l~~~~~l~   84 (393)
T PRK09705         24 LLTSVGPLLPQLR-QASGMSFSVAALLTALPVVTMGGLALAGSWLHQH-VSERRSVAISLLLI   84 (393)
T ss_pred             hhhccchhHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-hCchHHHHHHHHHH
Confidence            3355555666544 5799999999999999999999999999999999 59999999988764

>PRK10429 melibiose:sodium symporter; Provisional

Probab=97.89  E-value=3e-05  Score=61.92  Aligned_cols=73  Identities=15%  Similarity=0.140  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhh----cccchHHH-HHHHHH
Q 048637           38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGD----SFLGRYQT-IFLLLL  112 (116)
Q Consensus        38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaD----r~iGRr~~-i~~~~i  112 (116)
                      .+.++++- +..+..+..+..|++.|+++.+|+++..+..+..+..+.-.+..|+.|+++|    | +||||. +.++.+
T Consensus         8 ~~~yg~g~-~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr-~Grrrp~il~g~i   85 (473)
T PRK10429          8 KLSYGFGA-FGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSR-WGKFKPWILIGTL   85 (473)
T ss_pred             HHhhccch-hHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCC-CCCcchhHhhhhH
Confidence            34444433 3446667778889999999999999999999999999999999999999999    6 499554 444443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=97.89  E-value=2.7e-05  Score=58.32  Aligned_cols=52  Identities=15%  Similarity=0.120  Sum_probs=46.3

Q ss_pred             HHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           62 TYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        62 ~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      .++.+++|++..+...+.....+...++.+++|+++|| +|||+++..+.++.
T Consensus        19 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~   70 (379)
T TIGR00881        19 PYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDR-SNPRVFLPIGLILC   70 (379)
T ss_pred             HHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHh-hCCeehhHHHHHHH
Confidence            35667899999999999999999999999999999999 59999999887653

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=97.87  E-value=0.00016  Score=55.90  Aligned_cols=65  Identities=11%  Similarity=-0.235  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637           47 MAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        47 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      ......++....+.|.|+.+.+|+++.+.........+...++.++.|+++|| +|+|+.+.++.+
T Consensus       225 ~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r-~~~~~~~~~~~~  289 (406)
T PRK15402        225 GLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSR-RPLRSLIRMGLW  289 (406)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHH
Confidence            33344455566678999888899999888777666667778889999999999 599998887654

>PRK09848 glucuronide transporter; Provisional

Probab=97.87  E-value=3.8e-05  Score=60.52  Aligned_cols=61  Identities=23%  Similarity=0.270  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcc---cchHHHH
Q 048637           47 MAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSF---LGRYQTI  107 (116)
Q Consensus        47 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~---iGRr~~i  107 (116)
                      ...+..+.....|++.|+++.+|++..++..+.....+...+..|+.|+++||.   +||||..
T Consensus        18 ~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~   81 (448)
T PRK09848         18 VANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPF   81 (448)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHH
Confidence            345666666778888999999999999999999999999999999999999992   2777755

>PRK11663 regulatory protein UhpC; Provisional

Probab=97.86  E-value=0.00013  Score=57.34  Aligned_cols=62  Identities=11%  Similarity=0.048  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcc
Q 048637           39 ALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSF  100 (116)
Q Consensus        39 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~  100 (116)
                      ++............++.+..++|.|+++..|++..++........+...++.+++|+++||+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~  306 (434)
T PRK11663        245 IWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKL  306 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence            44444444555556667788999999888999999999999999999999999999999994

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.85  E-value=3.5e-05  Score=62.86  Aligned_cols=75  Identities=13%  Similarity=0.042  Sum_probs=62.0

Q ss_pred             cCCCcccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhc
Q 048637           23 YRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDS   99 (116)
Q Consensus        23 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr   99 (116)
                      ++...+.+.++. |+ ++...+..++.....|++..|+|.|+++..|++..++....+...+...++.+++|+++||
T Consensus       261 ~~~~~~~~a~~d-p~-vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr  335 (495)
T KOG2533|consen  261 FKWKGFKEALKD-PG-VWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDR  335 (495)
T ss_pred             cCHHHHHHHHhc-hh-HHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHH
Confidence            666667777664 34 3444455566777888899999999999788999999999999999999999999999999

>PTZ00207 hypothetical protein; Provisional

Probab=97.85  E-value=0.00022  Score=59.38  Aligned_cols=75  Identities=8%  Similarity=-0.041  Sum_probs=51.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           36 WKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      |..+..++.+..+. ...|++..+.+ .+++++|++..+...+..+.... ..+.+++|+++|| +|+|+++.++.++.
T Consensus        27 w~~lva~~~~~~~~-g~~y~fsv~s~-~L~~~lgls~~~l~~i~svg~~~-g~~~lp~G~L~Dr-~G~R~vllig~ll~  101 (591)
T PTZ00207         27 FALLVLGAFCSICT-SFMYAFNLISG-AMQARYNLTQRDLSTITTVGIAV-GYFLLPYSFIYDY-LGPRPIFVLSMTVF  101 (591)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHhCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHH-hCcHHHHHHHHHHH
Confidence            34444444444443 34456665555 46778999999988887664444 3466678999999 59999999988754

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=97.84  E-value=6.7e-05  Score=58.42  Aligned_cols=54  Identities=13%  Similarity=0.018  Sum_probs=43.7

Q ss_pred             HHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHH
Q 048637           56 TGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLL  111 (116)
Q Consensus        56 ~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~  111 (116)
                      ....+|. +.+++|+++.+...+...+.+...++.+++|+++|| +|||+++....
T Consensus        10 ~~~~lp~-i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr-~grr~~~~~~~   63 (368)
T TIGR00903        10 FSPVLSL-VAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDR-AFKRWFLFGSL   63 (368)
T ss_pred             HHhhHHH-HHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccchHHHHHHH
Confidence            3333444 455799999999999999999999999999999999 59999876544

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK09669 putative symporter YagG; Provisional

Probab=97.84  E-value=3.5e-05  Score=60.77  Aligned_cols=72  Identities=14%  Similarity=0.062  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcc---cchHHH-HHHH
Q 048637           38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSF---LGRYQT-IFLL  110 (116)
Q Consensus        38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~---iGRr~~-i~~~  110 (116)
                      .+.++++- ...+..+..+..|++.|+++.+|+++..+..+..+..+...+.-|+.|+++||.   +||||. ++++
T Consensus        11 ~~~yg~g~-~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~   86 (444)
T PRK09669         11 KIGYGLGD-TACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWF   86 (444)
T ss_pred             HHhhcchh-hhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHH
Confidence            44555544 444555667788999999999999999999999999999999999999999992   277554 4444

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=97.84  E-value=0.0001  Score=57.02  Aligned_cols=84  Identities=6%  Similarity=-0.017  Sum_probs=53.6

Q ss_pred             cccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---CCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccch
Q 048637           27 PVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPL---GQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGR  103 (116)
Q Consensus        27 p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~l---g~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGR  103 (116)
                      +.++.+|+..  ++.......+....+.....+++.|++..+   +.+............+...++.++.|++.|| +||
T Consensus       207 ~~~~~l~~~~--~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r-~g~  283 (396)
T TIGR00882       207 LALELFRQRK--FWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINR-IGA  283 (396)
T ss_pred             HHHHHHcCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcc
Confidence            3445555432  222222333333444445556778877654   5555566666677777788888999999999 599


Q ss_pred             HHHHHHHHHH
Q 048637          104 YQTIFLLLLF  113 (116)
Q Consensus       104 r~~i~~~~il  113 (116)
                      |+.+.++.++
T Consensus       284 ~~~l~~~~~l  293 (396)
T TIGR00882       284 KNALLIAGTI  293 (396)
T ss_pred             chhHHHHHHH
Confidence            9998887754

>PRK03633 putative MFS family transporter protein; Provisional

Probab=97.84  E-value=0.00017  Score=55.59  Aligned_cols=60  Identities=15%  Similarity=0.075  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637           51 FAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        51 ~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      ..+.....++|.|+++ .|.+..++........+...++.++.|+++|| +|+|+++..+.+
T Consensus       214 ~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~l~~~~~  273 (381)
T PRK03633        214 IVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADR-FGRLLVLRVQVF  273 (381)
T ss_pred             HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-cCcHHHHHHHHH
Confidence            3444556788999975 69999888888888888889999999999999 599998876544

>TIGR00900 2A0121 H+ Antiporter protein

Probab=97.84  E-value=0.0002  Score=53.46  Aligned_cols=73  Identities=11%  Similarity=0.044  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637           39 ALFIIGVEMAERFAFCGTG-SNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        39 ~~~~~~~~~~~~~~~y~~~-~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      ++............++... .+.|.|.++.+|.+..+.........+...++.++.|+++|| +||++.+..+.+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~  285 (365)
T TIGR00900       212 LRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRY-FKRMALMTGAIF  285 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHH
Confidence            3333444444455555555 678888887899999999999989999999999999999999 599998887644

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=97.83  E-value=0.00013  Score=62.12  Aligned_cols=35  Identities=11%  Similarity=0.039  Sum_probs=28.5

Q ss_pred             HHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           78 NANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        78 ~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      ...+..++..++.+++|+++|| +|||+++.++.++
T Consensus       600 ~~~l~~l~~i~G~il~g~L~Dr-~GRr~~l~~~~~l  634 (742)
T TIGR01299       600 VNFLGTLAVLPGNIVSALLMDK-IGRLRMLAGSMVL  634 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHH
Confidence            3456667788899999999999 5999999877654

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.79  E-value=0.00013  Score=60.87  Aligned_cols=74  Identities=20%  Similarity=0.240  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHH-HHhhhhhHHHHhhhcccc--hHHHHHHHHH
Q 048637           38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSG-TSQLLPLLGAFVGDSFLG--RYQTIFLLLL  112 (116)
Q Consensus        38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~-~~~~~~~~~G~LaDr~iG--Rr~~i~~~~i  112 (116)
                      .++...+..++....++++..|+|.|++.++|+++.++..+.....+ ...++.+++|+++|| ++  .|+.+.++.+
T Consensus       331 ~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r-~~~~~~~~~~~~~~  407 (633)
T TIGR00805       331 IYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKK-FKLNVKKAAYFAIC  407 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeee-ecccHHHHHHHHHH
Confidence            45666677778888999999999999999999999999988876665 567899999999999 58  4555555443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=97.78  E-value=0.00011  Score=56.40  Aligned_cols=59  Identities=15%  Similarity=0.045  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           53 FCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        53 ~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      .+....+.|.++. +.|++..++........++..++.+++|+++|| +|||+.+.++.++
T Consensus       300 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~  358 (481)
T TIGR00879       300 INAIMYYSPTIFE-NAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDR-FGRRPLLLIGAAG  358 (481)
T ss_pred             CeehHHHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHH
Confidence            3344445555554 579999888888888888899999999999999 5999998877553

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=97.78  E-value=6.5e-05  Score=57.16  Aligned_cols=59  Identities=17%  Similarity=0.055  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           54 CGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        54 y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      ......+|.+.+ ++|++..+......++.+...++.+++|+++|| +|||+++..+.++.
T Consensus         8 ~~~~p~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~   66 (377)
T PRK11102          8 DMYLPALPVIAA-DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADS-FGRKPVILGGTLVF   66 (377)
T ss_pred             HHHhccHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhh-cCChHHHHHHHHHH
Confidence            344566777775 589999999999999999999999999999999 59999999887643

>TIGR00893 2A0114 d-galactonate transporter

Probab=97.77  E-value=6.1e-05  Score=56.31  Aligned_cols=53  Identities=19%  Similarity=0.216  Sum_probs=46.2

Q ss_pred             HHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           60 LITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        60 l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      ...++.+++|++..+...+.....+...++.+++|+++|| +|||+++..+.++
T Consensus        16 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~   68 (399)
T TIGR00893        16 AAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDR-FGARKTLAVFIVI   68 (399)
T ss_pred             hHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHh-cCcceeeHHHHHH
Confidence            3344667899999999999999999999999999999999 5999999887654

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=97.74  E-value=0.0002  Score=55.64  Aligned_cols=75  Identities=16%  Similarity=0.022  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           37 KSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        37 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      |+++..+...++....++....+.+.|.+..+| +............+...++.++.|+++|| +|||+++.++.++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~g~~~~~~~~~~~  296 (437)
T TIGR00792       222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKK-FGRKILFAGGILL  296 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHH
Confidence            344445555555566666665566667766666 44555556667778888899999999999 5999999887654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK15075 citrate-proton symporter; Provisional

Probab=97.74  E-value=0.00028  Score=55.49  Aligned_cols=55  Identities=15%  Similarity=-0.011  Sum_probs=35.2

Q ss_pred             HHHHHhccccCCChHHHH-HHHHHHH-----HHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           59 NLITYLTGPLGQSTATAA-QNANKWS-----GTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        59 ~l~~yl~~~lg~~~~~a~-~~~~~~~-----~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      ++...+.++++.++.+.. ...+...     +...++.++.|+++|| +||||+++.+.++.
T Consensus        36 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~~~~~~   96 (434)
T PRK15075         36 FYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDR-VGRRKGLIVTLSIM   96 (434)
T ss_pred             HHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh-hchHHHHHHHHHHH
Confidence            333455667888766533 2222221     1223567899999999 59999999888654

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=97.73  E-value=0.00028  Score=56.52  Aligned_cols=77  Identities=16%  Similarity=0.043  Sum_probs=46.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHH-HH-----HHHHHHHHHhhhhhHHHHhhhcccchHHHHHH
Q 048637           36 WKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATA-AQ-----NANKWSGTSQLLPLLGAFVGDSFLGRYQTIFL  109 (116)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a-~~-----~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~  109 (116)
                      ++.++...+..+.+..-+. +..+...++.+.++.+.... ..     +.....+...++.+++|+++|| +|||+++.+
T Consensus        15 ~~~~~~~~~g~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~   92 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFG-VYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDK-YGRQKILAI   92 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHH
Confidence            3444444444445444333 44455556666664333211 11     1244556677899999999999 599999999


Q ss_pred             HHHHH
Q 048637          110 LLLFM  114 (116)
Q Consensus       110 ~~il~  114 (116)
                      +.++.
T Consensus        93 ~~~l~   97 (490)
T PRK10642         93 TIVIM   97 (490)
T ss_pred             HHHHH
Confidence            88654

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.71  E-value=0.00032  Score=54.12  Aligned_cols=67  Identities=15%  Similarity=0.015  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHH-HHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           45 VEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSG-TSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        45 ~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~-~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      ..++..........+.+.|+.+ .|+++.+.......... ...++.+++|+++|| +|+|+++..+.++
T Consensus       216 ~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~  283 (390)
T TIGR02718       216 LALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRR-AGLWRTFILGVGL  283 (390)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHH
Confidence            3344445555666788888876 79999998887776654 555678899999999 5999999876643

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00896 CynX cyanate transporter

Probab=97.71  E-value=2.9e-05  Score=59.02  Aligned_cols=55  Identities=20%  Similarity=0.187  Sum_probs=47.2

Q ss_pred             HHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           57 GSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        57 ~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      ...+|. +.+++|++.++.........+...++.++.|+++|| +||||++..+.++
T Consensus        20 ~~~lp~-l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~   74 (355)
T TIGR00896        20 GPLLPQ-IRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARR-FGEERSVAAGLLL   74 (355)
T ss_pred             cccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCchHHHHHHHHH
Confidence            334554 455799999999999999999999999999999999 5999999988754

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.69  E-value=0.00036  Score=56.67  Aligned_cols=80  Identities=16%  Similarity=0.034  Sum_probs=65.9

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchH--HHHHHH
Q 048637           33 SGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRY--QTIFLL  110 (116)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr--~~i~~~  110 (116)
                      |+++ .+..-+...+..+-+...+..+...|.++++|++..+...+..+..+++.++.+++|++.|| +|-|  +++..+
T Consensus       278 ~~~~-~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r-~g~k~~~~l~~~  355 (477)
T PF11700_consen  278 RKLR-QLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDR-FGPKTKRTLLIS  355 (477)
T ss_pred             HhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHH
Confidence            4444 44444455566677778888999999999999999999999999999999999999999999 6999  888777


Q ss_pred             HHHH
Q 048637          111 LLFM  114 (116)
Q Consensus       111 ~il~  114 (116)
                      .++.
T Consensus       356 l~~~  359 (477)
T PF11700_consen  356 LILW  359 (477)
T ss_pred             HHHH
Confidence            6543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK09528 lacY galactoside permease; Reviewed

Probab=97.68  E-value=9.9e-05  Score=57.55  Aligned_cols=62  Identities=10%  Similarity=0.072  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHhcccc---CCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           51 FAFCGTGSNLITYLTGPL---GQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        51 ~~~y~~~~~l~~yl~~~l---g~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      ..+......+|.|+.+..   +.+..+...+..+..+...++.+++|+++|| +|||+.+..+.++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~l  301 (420)
T PRK09528        237 CFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINR-IGAKNALLLAGTI  301 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhHHHHHH
Confidence            333444456777776443   5666666777777778888999999999999 5999998776653

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=97.68  E-value=0.00029  Score=61.16  Aligned_cols=68  Identities=16%  Similarity=0.114  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccccCCChHH--HHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637           44 GVEMAERFAFCGTGSNLITYLTGPLGQSTAT--AAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        44 ~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~--a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      ...++.+....+....+..++...++.+...  ...+..++.+...++.+++|+++|| +|||++++++.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr-~grk~~l~~~~~   85 (1146)
T PRK08633         16 LTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADK-FSKNRVIRIVKL   85 (1146)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhccc-ccHHHHHHHHHH
Confidence            3333334333333344444554444554333  4566677777888899999999999 599999987653

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=97.68  E-value=0.00081  Score=54.56  Aligned_cols=77  Identities=8%  Similarity=-0.048  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           37 KSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        37 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      |+++.........-..-+......+..-...+|+++++......+..+...++.++.|++.|| +|.|+++.++.++.
T Consensus        34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr-~G~R~v~~~~~ll~  110 (462)
T PRK15034         34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPI-FGGRRWTVFSTAIL  110 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHH
Confidence            555555544333333333333333333344799999999999999999999998888999999 49999998887653

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=97.67  E-value=0.00033  Score=56.16  Aligned_cols=44  Identities=18%  Similarity=0.129  Sum_probs=36.6

Q ss_pred             CCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           69 GQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        69 g~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      +.+..+...+.....+...++.+++|+++|| +|||+++.++.++
T Consensus        52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~-~Grr~~~~~~~~~   95 (502)
T TIGR00887        52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADK-LGRKRVYGMELII   95 (502)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHH
Confidence            4556666778888888999999999999999 5999999877654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10489 enterobactin exporter EntS; Provisional

Probab=97.62  E-value=8.5e-05  Score=57.79  Aligned_cols=63  Identities=16%  Similarity=0.163  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHH
Q 048637           47 MAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLL  111 (116)
Q Consensus        47 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~  111 (116)
                      +............+|.+.+ +++.++.+...+.....+...++.+++|+++|| +|||+++..+.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr-~g~~~~l~~~~   89 (417)
T PRK10489         27 FISIFGLGLLGVAVPVQIQ-MMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADR-YDRKKLILLAR   89 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhh-cCCceEEEehH
Confidence            3444455555666777765 467799999999999999999999999999999 59999887654

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=97.61  E-value=0.00019  Score=56.41  Aligned_cols=49  Identities=18%  Similarity=0.190  Sum_probs=44.2

Q ss_pred             cccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHHh
Q 048637           66 GPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFMS  115 (116)
Q Consensus        66 ~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~~  115 (116)
                      ++.|+++.+.......+.+.+.++.++.|.++||+ |||+..+..+++.+
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~  110 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYS  110 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHH
Confidence            46899999999999999999999999999999995 99999999888653

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=97.59  E-value=0.00087  Score=51.68  Aligned_cols=73  Identities=8%  Similarity=-0.114  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           39 ALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        39 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      ++......++....+.....++|.|+. +.|++..+......+..+...+..++.|++.|| +|+|+.+..+.+.
T Consensus       207 ~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~l~~~~~~  279 (382)
T PRK11128        207 VWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRR-WSARDLLLLSAIC  279 (382)
T ss_pred             HHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHH
Confidence            333333334444555566778888986 489999888888888888888888999999999 5999998877754

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=97.57  E-value=0.0005  Score=54.10  Aligned_cols=59  Identities=19%  Similarity=0.040  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           54 CGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        54 y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      +....+.|.+.. ..|++...+........+...++.+++|+++|| +|||++++.+.++.
T Consensus       288 ~~~~~~~p~i~~-~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~g~r~~~i~~~~~~  346 (479)
T PRK10077        288 NVVLYYAPEIFK-TLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGM  346 (479)
T ss_pred             hHHHHHHHHHHH-HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH-hcChHHHHHhHHHH
Confidence            334445566554 588888777777777778888899999999999 59999998877643

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=97.57  E-value=0.00068  Score=52.63  Aligned_cols=54  Identities=20%  Similarity=0.209  Sum_probs=41.0

Q ss_pred             HHHHHHhccccCCChHHHHHHHHHH-HHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637           58 SNLITYLTGPLGQSTATAAQNANKW-SGTSQLLPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        58 ~~l~~yl~~~lg~~~~~a~~~~~~~-~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      .+.+.|+.+..|+++.+...+.... .+...++.+++|+++|| +|||+.+..+.+
T Consensus       230 ~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r-~g~~~~l~~~~~  284 (402)
T PRK11902        230 SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVR-LGLYRSLMLFGV  284 (402)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHH
Confidence            3445566677899998888776544 44578889999999999 599998876554

>PRK09848 glucuronide transporter; Provisional

Probab=97.57  E-value=0.00042  Score=54.59  Aligned_cols=74  Identities=8%  Similarity=-0.022  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           39 ALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        39 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      +.......++....++......|.|++..+|.++..+........+...++.++.++++|| +|+|+++.++.++
T Consensus       230 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r-~g~~~~~~~g~~~  303 (448)
T PRK09848        230 LFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVAR-IGKKNTFLIGALL  303 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHH
Confidence            4444444555566666666678888888899887666554444455677788999999999 5999999887754

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.54  E-value=5.9e-05  Score=62.96  Aligned_cols=81  Identities=15%  Similarity=0.132  Sum_probs=60.1

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637           33 SGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      ...+|-+++.+.+.......+.+......+-+.+.++++..+...+...+.+...++.++.|+++|| +||+|.+.++.+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r-~~r~~~i~~g~l  106 (633)
T TIGR00805        28 FSKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTK-LHRPIVIGIGCA  106 (633)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcc-cCcceEEEecHH
Confidence            3445655455554444444444444445555667899999999999999999999999999999999 599999888876


Q ss_pred             HH
Q 048637          113 FM  114 (116)
Q Consensus       113 l~  114 (116)
                      ++
T Consensus       107 l~  108 (633)
T TIGR00805       107 IM  108 (633)
T ss_pred             HH
Confidence            54

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.54  E-value=0.0007  Score=55.50  Aligned_cols=55  Identities=16%  Similarity=0.050  Sum_probs=48.8

Q ss_pred             HHHHHHhccccCCChHH-HHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           58 SNLITYLTGPLGQSTAT-AAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        58 ~~l~~yl~~~lg~~~~~-a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      .+...|+.+++|+++.+ ...+...+.....++.+++|+++|| +|-|+++..+.+.
T Consensus        46 s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDr-lG~K~vL~l~~l~  101 (511)
T TIGR00806        46 SFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDY-LRYKPVLVLQALS  101 (511)
T ss_pred             HHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHH
Confidence            45566888899999999 8899999999999999999999999 5999999988764

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=97.53  E-value=0.0011  Score=51.13  Aligned_cols=56  Identities=9%  Similarity=-0.159  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchH
Q 048637           47 MAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRY  104 (116)
Q Consensus        47 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr  104 (116)
                      +....++.....++|.|++ ++|.+..+...+...+.+...++.++.|.++|| +||+
T Consensus        14 ~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~-~~~~   69 (382)
T TIGR00902        14 FGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKD-ANHI   69 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcH
Confidence            3334444556678889996 589999999999999999999999999999999 5974

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=97.52  E-value=0.0008  Score=51.90  Aligned_cols=55  Identities=18%  Similarity=-0.025  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccch
Q 048637           47 MAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGR  103 (116)
Q Consensus        47 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGR  103 (116)
                      ++...++.....++|.|+++ +|.+..+......++.+...++.+++|.++|| +||
T Consensus        14 ~~~~~~~g~~~p~l~~~l~~-~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr-~g~   68 (382)
T PRK11128         14 FGYFFAYGVFLPFWSVWLKG-QGYTPETIGLLLGAGLVARFLGSLLIAPRVKD-PSQ   68 (382)
T ss_pred             HHHHHHHHHHhhhHHHHHHh-cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhh-hcc
Confidence            34445566777789999965 79999999999999999999999999999999 598

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.46  E-value=0.0015  Score=51.82  Aligned_cols=67  Identities=19%  Similarity=0.089  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637           45 VEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        45 ~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      ..+.+-..+-....|++.|+++ .|++..+...+.....++..+.+++.|+++||+..+||.+.+..+
T Consensus        10 ~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l   76 (400)
T PF03825_consen   10 MYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSL   76 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHH
Confidence            3344445555666789999986 679999999999999999999999999999996446777655443

>TIGR00898 2A0119 cation transport protein

Probab=97.44  E-value=0.00023  Score=56.65  Aligned_cols=50  Identities=12%  Similarity=0.122  Sum_probs=44.0

Q ss_pred             hccccCCC---hHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           64 LTGPLGQS---TATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        64 l~~~lg~~---~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      +.+++|++   ..+......++.+...++.+++|+++|| +|||+++.++.++.
T Consensus       115 i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr-~Grr~~~~~~~~~~  167 (505)
T TIGR00898       115 IVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDR-FGRKKVLLLSTLVT  167 (505)
T ss_pred             EEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhh-ccchHHHHHHHHHH
Confidence            45678998   8889999999999999999999999999 59999999887643

>PF13347 MFS_2: MFS/sugar transport protein

Probab=97.43  E-value=7e-05  Score=58.78  Aligned_cols=64  Identities=20%  Similarity=0.143  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhh----cccchHHHHHHHH
Q 048637           47 MAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGD----SFLGRYQTIFLLL  111 (116)
Q Consensus        47 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaD----r~iGRr~~i~~~~  111 (116)
                      ......+.....|++.|+++.+|+++.....+..+..+...+.-|+.|+++|    | +||||..+..+
T Consensus        11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr-~Grrrp~~l~g   78 (428)
T PF13347_consen   11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTR-WGRRRPWILIG   78 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeeccc-ccccceEeehh
Confidence            4555566667789999999999999999999999999999999999999999    8 59887766433

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.43  E-value=0.0011  Score=53.84  Aligned_cols=76  Identities=18%  Similarity=0.158  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      +....++...+....+....+.++.|.+..+|.++..+.............+.++.-.+++| +|+|+++.++.++.
T Consensus       237 p~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~-~gkk~~~~~~~~~~  312 (467)
T COG2211         237 PLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKK-FGKKKLFLIGLLLL  312 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hchHHHHHHHHHHH
Confidence            34444445666677777778888999999999999999888888888888889999999999 69999999997654

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=97.37  E-value=0.00083  Score=58.34  Aligned_cols=66  Identities=14%  Similarity=-0.077  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHHHHhccccCCChH-HHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           47 MAERFAFCGTGSNLITYLTGPLGQSTA-TAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        47 ~~~~~~~y~~~~~l~~yl~~~lg~~~~-~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      .+.....+....++|.|+...+|++.. .+..+.....+...++.+++|+++|| +++++++.++.++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r-~~~~~~~~~~~~~  308 (1146)
T PRK08633        242 SYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGR-HIELGLVPLGALG  308 (1146)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceEccchhHHHHH
Confidence            334445556677899999999999998 88888888888888999999999999 5998888766543

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.37  E-value=0.00034  Score=57.10  Aligned_cols=46  Identities=17%  Similarity=0.077  Sum_probs=40.5

Q ss_pred             cCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           68 LGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        68 lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      -|++......+...+.+...++++++||++|| +|||+++....+++
T Consensus        79 g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~-~GRK~vYG~~liIm  124 (538)
T KOG0252|consen   79 GHYPSGVLALVNAAALVGTIFGQLFFGWLGDK-FGRKKVYGKELIIM  124 (538)
T ss_pred             CcCCchHHHHHHHHHHHHHHHHHHHHHHHHhh-hcchhhhhHHHHHH
Confidence            35888999999999999999999999999999 59999987776654

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.36  E-value=0.00068  Score=54.53  Aligned_cols=77  Identities=12%  Similarity=0.081  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHHh
Q 048637           38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFMS  115 (116)
Q Consensus        38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~~  115 (116)
                      ++.+-....+..+=+.-.+..+...|....+|++..+...+....++++.++++++|+|.|| +|-|+++..+.++++
T Consensus       253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~r-fg~k~vl~~~lvi~~  329 (438)
T COG2270         253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDER-FGSKPVLMIGLVILS  329 (438)
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCceeehHHHHHHH
Confidence            44444444444444555677888999999999999999999999999999999999999999 699999998887653

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=97.35  E-value=0.00035  Score=56.81  Aligned_cols=79  Identities=8%  Similarity=0.040  Sum_probs=62.0

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637           33 SGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      +...+.+...+++...+.+--|.+-. ...=.++.+|.+......+...+.+...++.|++|+++||| .|++++.+|..
T Consensus        29 ~~~~~~l~il~~vnlmny~Dr~~iag-v~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~  106 (493)
T KOG1330|consen   29 KSPTLTLVILCLVNLMNYADRYTIAG-VLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIF  106 (493)
T ss_pred             ccchHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHH
Confidence            33445667777777777777775544 22224456899999999999999999999999999999996 99999988875


Q ss_pred             H
Q 048637          113 F  113 (116)
Q Consensus       113 l  113 (116)
                      +
T Consensus       107 i  107 (493)
T KOG1330|consen  107 I  107 (493)
T ss_pred             H
Confidence            4

>TIGR00889 2A0110 nucleoside transporter

Probab=97.34  E-value=0.00077  Score=53.13  Aligned_cols=61  Identities=15%  Similarity=0.053  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHhccccCCC--------hHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           52 AFCGTGSNLITYLTGPLGQS--------TATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        52 ~~y~~~~~l~~yl~~~lg~~--------~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      .......+.+.|+++ .|.+        .........+..+...++.++.|+++|| +|||+++..+.++.
T Consensus       223 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr-~g~r~~l~~~~~~~  291 (418)
T TIGR00889       223 PLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKR-FGIKKVMLLSLVAW  291 (418)
T ss_pred             HHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHH
Confidence            334455777888864 4433        3556777778888888899999999999 59999998887653

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=97.30  E-value=0.0012  Score=52.18  Aligned_cols=46  Identities=7%  Similarity=-0.072  Sum_probs=41.6

Q ss_pred             ccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           67 PLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        67 ~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      ++|++..+...+...+.+...++.+++|+++|| +|||+++..+.++
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~  115 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGK-YVFKWSIGIGMFL  115 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHH-hCcchhhHHHHHH
Confidence            578999999999999999999999999999999 5999999887754

>PRK11043 putative transporter; Provisional

Probab=97.28  E-value=0.004  Score=48.02  Aligned_cols=60  Identities=15%  Similarity=-0.114  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHH
Q 048637           49 ERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLL  110 (116)
Q Consensus        49 ~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~  110 (116)
                      ....++....+.|.|+++ .|++..+.........+...++.++++++.|| +|+|+.+..+
T Consensus       215 ~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r-~~~~~~~~~~  274 (401)
T PRK11043        215 CSAAFFAWLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQK-WGGEQLLPWL  274 (401)
T ss_pred             HHHHHHHHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHH
Confidence            344556666778888864 79999888877767777788888999999999 5999876443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=97.27  E-value=0.0023  Score=49.74  Aligned_cols=59  Identities=10%  Similarity=-0.084  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637           53 FCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        53 ~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      .+....++|.|+++.+|++..+...+.....+...++.++.|+++|| .++++.+..+.+
T Consensus       239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~-~~~~~~l~~~~~  297 (417)
T PRK10489        239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHS-ARPGLLMLLSTL  297 (417)
T ss_pred             HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhc-cCcchHHHHHHH
Confidence            34566789999998899999998888888888899999999999999 487777766554

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.27  E-value=0.004  Score=49.05  Aligned_cols=68  Identities=10%  Similarity=-0.009  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccc-cCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           45 VEMAERFAFCGTGSNLITYLTGP-LGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        45 ~~~~~~~~~y~~~~~l~~yl~~~-lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      ..++......+..+|++.|+.+. .+.+...+......+.....++-+++|+++|| +++||++.+.++.
T Consensus       240 ~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r-~~~~~~l~i~~~~  308 (410)
T TIGR00885       240 AQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISY-LAAHKVLMAYAII  308 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHH
Confidence            33444444456678899998653 35555555656666777888999999999999 5999988766654

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=97.21  E-value=0.0033  Score=48.19  Aligned_cols=63  Identities=17%  Similarity=0.153  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHhccccCCChHH---HHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           50 RFAFCGTGSNLITYLTGPLGQSTAT---AAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        50 ~~~~y~~~~~l~~yl~~~lg~~~~~---a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      .........+++.|..+..+.....   ...+..+..+...++.++.|+++|| +|||+++..+.+.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr-~g~~~~~~~~~~~  297 (408)
T PRK09874        232 QVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDR-IGPEKILITALIF  297 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccchhHHHHHHH
Confidence            3344455667888887654433222   2223334455666778889999999 5999998877654

>PRK11462 putative transporter; Provisional

Probab=97.21  E-value=0.001  Score=53.19  Aligned_cols=74  Identities=11%  Similarity=0.084  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhc---ccchHHHHHHHH
Q 048637           37 KSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDS---FLGRYQTIFLLL  111 (116)
Q Consensus        37 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr---~iGRr~~i~~~~  111 (116)
                      +.+.++++- +..+..+..+..|++.|++..+|+++..+..+..+.-+.-.+.-|+.|+++||   .+||||..+...
T Consensus        10 ~k~~Yg~g~-~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g   86 (460)
T PRK11462         10 EKIGYGMGD-AASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFG   86 (460)
T ss_pred             HHHhhccch-hhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHH
Confidence            345555443 34466667778899999999999999999999999999999999999999996   259887666443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.21  E-value=0.0019  Score=54.00  Aligned_cols=54  Identities=17%  Similarity=0.228  Sum_probs=42.9

Q ss_pred             HHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           59 NLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        59 ~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      ....+....+|-++..+. +.....+...+..++.|.|||. ||||..++.+.++.
T Consensus        65 ~~l~~I~~diG~~~~~~w-~~~~~~l~~av~~~~~G~LSDl-fGRr~~~i~g~~l~  118 (599)
T PF06609_consen   65 SILPYINADIGGSDNWSW-FSTAWTLASAVSFPFVGRLSDL-FGRRYFFIIGSLLG  118 (599)
T ss_pred             HHHHHHHHhcCCCccchH-HHHHHHHHHHHHHHhhHHHHHH-hcchHHHHHHHHHH
Confidence            445677788888866655 4456777888888999999999 69999999988754

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=97.18  E-value=0.0034  Score=50.57  Aligned_cols=77  Identities=18%  Similarity=0.152  Sum_probs=55.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------------------CCChHHHHHHHHHHHHHHhhhhhHHHHh
Q 048637           36 WKSALFIIGVEMAERFAFCGTGSNLITYLTGPL-------------------GQSTATAAQNANKWSGTSQLLPLLGAFV   96 (116)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~l-------------------g~~~~~a~~~~~~~~~~~~~~~~~~G~L   96 (116)
                      +|.-+..+.+.+.+...||+.........+...                   -.+...-.-=..+..++-..+.++.|++
T Consensus       325 rkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~i  404 (528)
T KOG0253|consen  325 RKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVI  404 (528)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHH
Confidence            466788888889999999998766655554321                   1111122223456777888899999999


Q ss_pred             hhcccchHHHHHHHHHH
Q 048637           97 GDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        97 aDr~iGRr~~i~~~~il  113 (116)
                      -|| +|||+++....++
T Consensus       405 ver-lGRKkTMal~l~~  420 (528)
T KOG0253|consen  405 VER-LGRKKTMALSLIL  420 (528)
T ss_pred             HHH-hcchhHHHHHHHH
Confidence            999 6999999887764

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=97.13  E-value=0.0033  Score=48.35  Aligned_cols=60  Identities=18%  Similarity=0.133  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637           49 ERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        49 ~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      ....++....+++.|+.+ .|.+.  .........+...++.++.|+++|| +||||.+..+.+
T Consensus       228 ~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~  287 (399)
T PRK05122        228 ASIGFGTIATFITLYYAA-RGWDG--AALALTLFGVAFVGARLLFGNLINR-LGGLRVAIVSLL  287 (399)
T ss_pred             HHHHHHHHHHHHHHHHHH-ccccc--chHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHH
Confidence            345566677788888764 45532  3344456666777788999999999 599998876654

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.12  E-value=0.0009  Score=54.07  Aligned_cols=81  Identities=14%  Similarity=0.040  Sum_probs=57.1

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637           33 SGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      +..+|+...++++...+..+.+-...|+...+-+..|.+... .....+..++..++..+++++-|| +|||+.++.+.+
T Consensus       290 ~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~-~gRr~lll~s~~  367 (513)
T KOG0254|consen  290 PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDR-FGRRKLLLFGAA  367 (513)
T ss_pred             cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHhHH
Confidence            446677777777776666654434344333334456777554 666677788888888999999999 599999999987


Q ss_pred             HHh
Q 048637          113 FMS  115 (116)
Q Consensus       113 l~~  115 (116)
                      .+.
T Consensus       368 ~m~  370 (513)
T KOG0254|consen  368 GMS  370 (513)
T ss_pred             HHH
Confidence            654

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=97.11  E-value=0.0036  Score=48.56  Aligned_cols=65  Identities=18%  Similarity=0.132  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhccc-----chHH-HHHHHHH
Q 048637           44 GVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFL-----GRYQ-TIFLLLL  112 (116)
Q Consensus        44 ~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~i-----GRr~-~i~~~~i  112 (116)
                      .+-..+...+.....-+|.|+++ .|++.++..........  .++.++.|+++|| +     |||| .+..+.+
T Consensus         6 ~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr-~~~~~~g~rr~~l~~~~~   76 (402)
T PRK11902          6 LLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDR-YTPPLLGRRRGWLLLTQV   76 (402)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHc-ccccCCCcchhHHHHHHH
Confidence            34456666666677789999996 59999999888655554  6889999999999 7     8876 5555444

>TIGR00788 fbt folate/biopterin transporter

Probab=97.11  E-value=0.0042  Score=49.90  Aligned_cols=79  Identities=19%  Similarity=0.002  Sum_probs=58.8

Q ss_pred             cCChHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccc-----hHHH
Q 048637           33 SGGWKSALF-IIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLG-----RYQT  106 (116)
Q Consensus        33 ~~~~~~~~~-~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iG-----Rr~~  106 (116)
                      ..+++..+. +..+-+++.+. +....-++.++++.+|++.++.........+-..+- ++.|.++|| ++     ||+.
T Consensus        21 ~~~~~~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K-~l~g~l~D~-~~i~G~rRr~~   97 (468)
T TIGR00788        21 SFHPRVVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALK-PFAGVMSDT-FPLFGYTKRWY   97 (468)
T ss_pred             cCCcchHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHh-cCCCCccchHH
Confidence            444554444 34466777777 777788889999999999999987776766666664 559999999 58     7887


Q ss_pred             HHHHHHHH
Q 048637          107 IFLLLLFM  114 (116)
Q Consensus       107 i~~~~il~  114 (116)
                      ++++.++.
T Consensus        98 l~~~~~l~  105 (468)
T TIGR00788        98 LVLSGLLG  105 (468)
T ss_pred             HHHHHHHH
Confidence            77776543

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=97.11  E-value=0.005  Score=53.91  Aligned_cols=34  Identities=6%  Similarity=-0.014  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHH
Q 048637           74 TAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIF  108 (116)
Q Consensus        74 ~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~  108 (116)
                      ....+..++.+...++.+++|+++|| +|||+++.
T Consensus        53 ~~~l~~~~~~l~~~l~~~~~G~laDr-~~rk~~~~   86 (1140)
T PRK06814         53 LVTLAGAVFILPFFIFSALAGQLADK-YDKAKLAK   86 (1140)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHhhhhh-ccHHHHHH
Confidence            35556667778888999999999999 59999763

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.08  E-value=1.3e-05  Score=62.77  Aligned_cols=84  Identities=18%  Similarity=0.088  Sum_probs=54.8

Q ss_pred             ccccccC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHH
Q 048637           28 VHRANSG--GWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQ  105 (116)
Q Consensus        28 ~~~~~~~--~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~  105 (116)
                      .++.+++  +.+++...+.+........+....++..++.+..|.+..  ........+...++.+++.++.|| +|||+
T Consensus       241 ~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~GRr~  317 (451)
T PF00083_consen  241 WRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDR-FGRRK  317 (451)
T ss_pred             eeeccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccc-ccccc
Confidence            4455544  235666666666666555444444555555556777776  444455566677788888999999 59999


Q ss_pred             HHHHHHHHH
Q 048637          106 TIFLLLLFM  114 (116)
Q Consensus       106 ~i~~~~il~  114 (116)
                      +++.+.++.
T Consensus       318 ~~i~~~~~~  326 (451)
T PF00083_consen  318 LLIIGLLLM  326 (451)
T ss_pred             ccccccccc
Confidence            998877543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=97.07  E-value=0.0049  Score=49.03  Aligned_cols=60  Identities=12%  Similarity=-0.004  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhc
Q 048637           39 ALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDS   99 (116)
Q Consensus        39 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr   99 (116)
                      ++......+.....++....++|.|+++ .|++..++.....+..+...++.+++|+++||
T Consensus       243 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~  302 (455)
T TIGR00892       243 FLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGL  302 (455)
T ss_pred             HHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4444455555666777788899999875 79999999999999888899999999999997

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.07  E-value=0.0008  Score=54.09  Aligned_cols=48  Identities=17%  Similarity=0.171  Sum_probs=42.7

Q ss_pred             cccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           66 GPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        66 ~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      +..+.+.........++.+...++++++|.+||| +|||++++.+.++.
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~  158 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLF  158 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHH
Confidence            4567788888889999999999999999999999 69999999988765

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=97.02  E-value=0.002  Score=51.91  Aligned_cols=89  Identities=13%  Similarity=-0.006  Sum_probs=68.6

Q ss_pred             CCcccccccCChHHHHHHHHHHHHHHHHHHHHH---HHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhccc
Q 048637           25 GRPVHRANSGGWKSALFIIGVEMAERFAFCGTG---SNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFL  101 (116)
Q Consensus        25 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~---~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~i  101 (116)
                      +.|..+..+.|+|--+.++...+...+.||..-   .+...++.++.|+|+++...+.+.+.+..-++-.+.|.+||| .
T Consensus        13 ~~p~~~~~~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr-~   91 (448)
T COG2271          13 RLPASEIDKTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDR-S   91 (448)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhccc-C
Confidence            345555555565555666666667777777653   345566777889999999999999999999999999999999 5


Q ss_pred             chHHHHHHHHHHH
Q 048637          102 GRYQTIFLLLLFM  114 (116)
Q Consensus       102 GRr~~i~~~~il~  114 (116)
                      +.|+.+.++.++.
T Consensus        92 npr~fm~~gLils  104 (448)
T COG2271          92 NPRYFMAFGLILS  104 (448)
T ss_pred             CCceeehHHHHHH
Confidence            9999888877653

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=97.00  E-value=0.011  Score=47.20  Aligned_cols=80  Identities=20%  Similarity=0.097  Sum_probs=62.0

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637           33 SGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      +..+..++......++-...-+.....+|.-.+ .+|.+..++.+.++.+.....++.|+-..+.|| +.||+++....+
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~-dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r-~~Rr~lLl~~l~   86 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAA-DLGVSEGAAGQLITAYALGVALGAPLLALLTGR-LERRRLLLGLLA   86 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cchHHHHHHHHH
Confidence            334555555555555555565656566665554 699999999999999999999999999999999 599999988776


Q ss_pred             HH
Q 048637          113 FM  114 (116)
Q Consensus       113 l~  114 (116)
                      +.
T Consensus        87 lF   88 (394)
T COG2814          87 LF   88 (394)
T ss_pred             HH
Confidence            53

>PRK12382 putative transporter; Provisional

Probab=97.00  E-value=0.0035  Score=48.18  Aligned_cols=61  Identities=20%  Similarity=0.326  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           49 ERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        49 ~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      ....+.....+.+.|+.+ .|.+.  +......+.+...++.++.|+++|| +||||.+..+.++
T Consensus       228 ~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~  288 (392)
T PRK12382        228 QGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDR-FGGVKVAIVSLLV  288 (392)
T ss_pred             HHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHh-cCCCeehHHHHHH
Confidence            345556667788888865 46554  3334455666677888999999999 5999998877653

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=96.99  E-value=0.0066  Score=49.78  Aligned_cols=64  Identities=17%  Similarity=0.117  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccc
Q 048637           37 KSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLG  102 (116)
Q Consensus        37 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iG  102 (116)
                      +..+....-..+..++++.-..++|.|.. ..|+++.++.....+.++...++-++.|+++|+. .
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~  361 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-G  361 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-c
Confidence            34444444556667788888899999998 7999999999999999999999999999999994 6

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=96.98  E-value=0.0076  Score=47.92  Aligned_cols=71  Identities=14%  Similarity=-0.008  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHH
Q 048637           39 ALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLL  111 (116)
Q Consensus        39 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~  111 (116)
                      -|....-.-.++..+|++..|+|.++.+ -|+|+.++.....+...++....+..=++++|. ..+|.+....
T Consensus       210 aW~vtLfmGlqS~~~Y~~~~WLP~ili~-~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~-~n~r~~~~~~  280 (395)
T COG2807         210 AWQVTLFMGLQSLLYYIVIGWLPAILID-RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRS-KNQRPLVVLA  280 (395)
T ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHHH-cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHh-cccchHHHHH
Confidence            4556666678899999999999999985 799999999999999999999999999999985 5444444433

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=96.95  E-value=0.012  Score=45.77  Aligned_cols=68  Identities=7%  Similarity=-0.115  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHH
Q 048637           39 ALFIIGVEMAERFAFCGTGSNL-ITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIF  108 (116)
Q Consensus        39 ~~~~~~~~~~~~~~~y~~~~~l-~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~  108 (116)
                      ++......++....++....+. |.|. ++.|++..+.........+...++.++.|++.|| .+|+..+.
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r-~~~~~l~~  286 (394)
T PRK10213        218 VMAGMIAIFMSFAGQFAFFTYIRPVYM-NLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKR-SVKLALAG  286 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhHHHH
Confidence            3333333344444555556666 5555 5679999988888888888899999999999999 46554443

>PRK11010 ampG muropeptide transporter; Validated

Probab=96.94  E-value=0.0079  Score=48.54  Aligned_cols=68  Identities=13%  Similarity=0.087  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhccc-----chHHHHH
Q 048637           37 KSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFL-----GRYQTIF  108 (116)
Q Consensus        37 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~i-----GRr~~i~  108 (116)
                      |+.+..+.+.+......+.....+|.|++. .|.+..+......+...  +++.++.|.++|| +     ||||..+
T Consensus        12 ~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~gpl~Dr-~~~~~~Grrr~~l   84 (491)
T PRK11010         12 PNSAILLILGFASGLPLALTSGTLQAWMTV-ENIDLKTIGFFSLVGQA--YVFKFLWSPLMDR-YTPPFLGRRRGWL   84 (491)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH--HHHHHHHHHHHHc-ccccCCCCchHHH
Confidence            345666667677777888888889999875 58888777765323322  3688999999999 7     9998644

>TIGR00883 2A0106 metabolite-proton symporter

Probab=96.92  E-value=0.0056  Score=45.97  Aligned_cols=27  Identities=33%  Similarity=0.556  Sum_probs=22.5

Q ss_pred             hhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           87 QLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        87 ~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      .++.++.|+++|| +||||++..+.++.
T Consensus        49 ~i~~~~~G~l~dr-~g~r~~l~~~~~~~   75 (394)
T TIGR00883        49 PLGAIVFGHFGDR-IGRKKTLVITLLMM   75 (394)
T ss_pred             hhHHHHhhhhhhh-hhhHHHHHHHHHHH
Confidence            4577999999999 59999998887653

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=96.92  E-value=0.0036  Score=54.83  Aligned_cols=73  Identities=11%  Similarity=-0.129  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHH
Q 048637           38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLL  111 (116)
Q Consensus        38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~  111 (116)
                      .++......++....++.+.+++|.|++..+|.+...+..+.....+...++.++.|+++|++ ++++.+..+.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~  298 (1140)
T PRK06814        226 RIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGA  298 (1140)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHH
Confidence            344444444555566667778999999999999999999999999999999999999999984 7666544433

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=96.92  E-value=0.0068  Score=46.71  Aligned_cols=71  Identities=15%  Similarity=-0.006  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHH--HHHHHHHhhhhhHH-HHhhhcccchHHHHHHHH
Q 048637           39 ALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNA--NKWSGTSQLLPLLG-AFVGDSFLGRYQTIFLLL  111 (116)
Q Consensus        39 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~--~~~~~~~~~~~~~~-G~LaDr~iGRr~~i~~~~  111 (116)
                      +.....+-+.+...+.....++|.|+++ .|++..+.....  ....+...+..|+. ++.+|| .||||.+++..
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~-~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~-~g~r~~~i~~~   76 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLRE-DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWR-LGRRRSWVLPM   76 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCcchhHHHHH
Confidence            3455566678888888888999999986 599999888763  34455665555555 779999 59999964444

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=96.91  E-value=0.0084  Score=46.70  Aligned_cols=59  Identities=8%  Similarity=-0.172  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHH
Q 048637           52 AFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLL  111 (116)
Q Consensus        52 ~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~  111 (116)
                      ........+|.|+++.+|+++.++........+...++.++.|++.|| .++++++..+.
T Consensus       220 ~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~-~~~~~~~~~g~  278 (393)
T PRK11195        220 AGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTL-ETVLRVLPAGI  278 (393)
T ss_pred             HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccchHHHHH
Confidence            334455566778888899999999999988889999999999999999 59998877664

>PRK11462 putative transporter; Provisional

Probab=96.88  E-value=0.011  Score=47.38  Aligned_cols=62  Identities=15%  Similarity=0.135  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHH
Q 048637           48 AERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLL  111 (116)
Q Consensus        48 ~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~  111 (116)
                      +..............|.+..+|.+.. ...+...+.+...++.+++++++|| +|+|+++..+.
T Consensus       239 ~~~~~~~~~~~~~~y~~~y~~g~~~~-~~~~l~~~~i~~iig~~l~~~l~~r-~gkk~~~~~~~  300 (460)
T PRK11462        239 FNILAVCVRGGAMMYYVTWILGTPEV-FVAFLTTYCVGNLIGSALAKPLTDW-KCKVTIFWWTN  300 (460)
T ss_pred             HHHHHHHHHHhHhhhhhhhhcCChHH-HHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHH
Confidence            33333333333333344434554433 3345566677778888999999999 59999876443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=96.85  E-value=0.015  Score=47.84  Aligned_cols=73  Identities=15%  Similarity=0.092  Sum_probs=49.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           36 WKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      .+.+|.+-.+.   +++..+...-++-+. .++.-++.....+.....+-..++.+++|.++|| +.|||+++.+-++
T Consensus        12 Fr~lw~a~~iS---~lG~~~~~va~~wlv-~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr-~drrrili~~~~~   84 (524)
T PF05977_consen   12 FRRLWIAQLIS---NLGDWMQTVALAWLV-TQLTGSPLMVALVQAASTLPILLLSLFAGALADR-FDRRRILILSQLL   84 (524)
T ss_pred             HHHHHHHHHHH---HHHHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccchHHHHHHHHH
Confidence            34455554444   333332222233233 3456778888888888888888899999999999 5999999887654

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=96.81  E-value=0.016  Score=46.52  Aligned_cols=81  Identities=16%  Similarity=0.074  Sum_probs=63.7

Q ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHH
Q 048637           32 NSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLL  111 (116)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~  111 (116)
                      .+.++|+++........ ++.-+.+..-+-.++...+|+++.|...+..+-.+...+.=++-|.+.|| +|-|++..++.
T Consensus         9 k~~~~~~L~~S~~af~v-~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~dr-fGgR~~~~~s~   86 (417)
T COG2223           9 KRIARRNLWLSTLAFDV-GFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDR-FGGRKWTILSM   86 (417)
T ss_pred             ccchhHHHHHHHHHHHH-HHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcc-cCchHHHHHHH
Confidence            45667777777655433 33333344556677778999999999999999999999999999999999 59999998888


Q ss_pred             HHH
Q 048637          112 LFM  114 (116)
Q Consensus       112 il~  114 (116)
                      ++.
T Consensus        87 ~l~   89 (417)
T COG2223          87 LLL   89 (417)
T ss_pred             HHH
Confidence            763

>PRK09669 putative symporter YagG; Provisional

Probab=96.69  E-value=0.015  Score=45.87  Aligned_cols=60  Identities=13%  Similarity=0.020  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637           51 FAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        51 ~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      ..........+.|.+..++.+. ..........+...++.+++++++|| +|+|+.+..+.+
T Consensus       243 ~~~~~~~~~~~y~~~~~~~~~~-~~~~~~~~~~i~~ii~~~~~~~l~~r-~gk~~~~~~~~~  302 (444)
T PRK09669        243 TAVVTRGGATLYYVNYVLLRPD-LATLFLVTGMIAGLFGALLSERLLGK-FDRVRAFKWTIV  302 (444)
T ss_pred             HHHHHHhhhhheeeeeecCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHH
Confidence            3333333344444444455433 33334445556677788999999999 599999887664

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=96.68  E-value=0.014  Score=46.90  Aligned_cols=79  Identities=18%  Similarity=0.127  Sum_probs=60.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           35 GWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      +.-++..+..+.+......... --+...+++.++++..++..+..++.....+..+.+|++.+| +|+|+.++.|..++
T Consensus        11 ~~~~~v~~t~lFfl~G~~~~l~-diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk-~gyk~gi~lgL~l~   88 (422)
T COG0738          11 VKLAFVLLTSLFFLWGFITCLN-DILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKK-LGYKAGIVLGLLLY   88 (422)
T ss_pred             ceeHHHHHHHHHHHHHHHhhcc-hhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHH-hhhHHHHHHHHHHH
Confidence            4445555555555555444433 445555667899999999999999999999999999999999 59999999998765


Q ss_pred             h
Q 048637          115 S  115 (116)
Q Consensus       115 ~  115 (116)
                      +
T Consensus        89 a   89 (422)
T COG0738          89 A   89 (422)
T ss_pred             H
Confidence            3

>TIGR00898 2A0119 cation transport protein

Probab=96.57  E-value=0.01  Score=47.19  Aligned_cols=34  Identities=24%  Similarity=0.103  Sum_probs=26.9

Q ss_pred             HHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           79 ANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        79 ~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      ..+..+...++.+++++++|| +|||+++.++.++
T Consensus       361 ~~~~~~~~i~~~~~~~~l~dr-~grr~~~~~~~~~  394 (505)
T TIGR00898       361 LFISGLVELPAKLITLLLIDR-LGRRYTMAASLLL  394 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHH
Confidence            345566677788999999999 5999999887654

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=96.55  E-value=0.0031  Score=52.44  Aligned_cols=60  Identities=20%  Similarity=0.238  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           52 AFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        52 ~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      .+-.++..+++|.. ++|+++.+...++..-=++.++..|++|++|||| -++|.+.++..+
T Consensus        26 ~~g~l~pll~vy~k-QLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~-r~~r~lllgsl~   85 (618)
T KOG3762|consen   26 RFGSLFPLLAVYFK-QLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRY-RKRRPLLLGSLL   85 (618)
T ss_pred             cccccchHHHHHHH-HcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHH-HhcCchhHHHHH
Confidence            34467788999997 5999999999999999999999999999999996 777777777654

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=96.49  E-value=0.011  Score=44.43  Aligned_cols=75  Identities=16%  Similarity=0.149  Sum_probs=55.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           36 WKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      |-.+..++.+..+. .+.|.... +..-+++.+|++.++...+.....+...++ ++.|.+.|+ +|.+.++.+|++..
T Consensus         2 W~~l~a~~~v~~~~-Gt~Y~Fs~-yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~-~gp~~~l~iG~~~~   76 (250)
T PF06813_consen    2 WLSLVASIWVQLCS-GTTYTFSA-YSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDR-FGPWVVLLIGAVLG   76 (250)
T ss_pred             hhhHHHHHHHHHhc-Ccccchhh-hhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHh-cchHHHHHHHHHHH
Confidence            44444555554443 35565544 444566789999999999999999998875 888999999 59999999988753

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=96.45  E-value=0.022  Score=46.02  Aligned_cols=39  Identities=21%  Similarity=0.314  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           75 AAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        75 a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      ...+.....+...++.+++|.++|+ +|||+++.++.++.
T Consensus        91 ~s~~~s~~~lga~~g~l~~g~l~d~-~GRk~~l~~~~~~~  129 (513)
T KOG0254|consen   91 QGLLTSILNLGALVGSLLAGRLGDR-IGRKKTLLLAVVLF  129 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHH
Confidence            3678888999999999999999999 59999999888754

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=96.40  E-value=0.042  Score=42.78  Aligned_cols=68  Identities=15%  Similarity=-0.072  Sum_probs=45.0

Q ss_pred             cccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchH
Q 048637           29 HRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRY  104 (116)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr  104 (116)
                      ++.+|+  +.++......++....+|++..|+|+|+++ .|++.. +.....+..   ..+.+..++++|| +.||
T Consensus       186 ~~ll~~--~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~---~~g~~g~~~~~d~-~~r~  253 (368)
T TIGR00903       186 GALAGR--KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAI---LAGLIGVAVIPDR-VARA  253 (368)
T ss_pred             HHHHcC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHH---HHHHHHHHHhhHH-hhhh
Confidence            344443  445666677788888999999999999965 678864 333332333   3344556899999 4654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00901 2A0125 AmpG-related permease

Probab=96.33  E-value=0.013  Score=44.42  Aligned_cols=48  Identities=19%  Similarity=0.119  Sum_probs=34.0

Q ss_pred             HHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcc----cchHHHHHH
Q 048637           59 NLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSF----LGRYQTIFL  109 (116)
Q Consensus        59 ~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~----iGRr~~i~~  109 (116)
                      -+|.+++ +.|++.++....... ..... ..++.|.++||+    +||||.+++
T Consensus        10 ~~~~~~~-~~g~s~~~~g~~~~~-~~~~~-~~~~~g~~~Dr~~~~~~Grr~~~l~   61 (356)
T TIGR00901        10 TLPYWLR-SKNVSLKTIGFFSLV-GLPYS-LKFLWSPLVDTVYLPFFGRRRSWLV   61 (356)
T ss_pred             HHHHHHH-HcCCCHHHHHHHHHH-HHHHH-HHHHHHHHHhcccCCCCCccHHHHH
Confidence            3555555 679999998887644 33333 388999999994    389997543

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=96.23  E-value=0.054  Score=43.00  Aligned_cols=67  Identities=12%  Similarity=-0.049  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           47 MAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        47 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      +......-....|.+.|+++..|.+.........+..+.-.+.-.+.+++--| +|-++++.++.+..
T Consensus       217 ~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r-~g~~~ll~~a~~~~  283 (400)
T PF03825_consen  217 FLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKR-FGIKWLLLLALVAY  283 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHH
Confidence            33344444556888999987655887777777778888899999999999999 59999999998764

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=96.17  E-value=0.014  Score=47.67  Aligned_cols=73  Identities=22%  Similarity=0.181  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcc---cchHHHHHHHH
Q 048637           38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSF---LGRYQTIFLLL  111 (116)
Q Consensus        38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~---iGRr~~i~~~~  111 (116)
                      .+.++.+- +..+..+..+..|++.|.+...|+++..+..+..++-+.-.+.=|+.|.++||.   +||+|-.+...
T Consensus        14 ki~Yg~gd-~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g   89 (467)
T COG2211          14 KIGYGLGD-FASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWG   89 (467)
T ss_pred             HHhhcchh-hHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHH
Confidence            34444443 445566677889999999999999999999999999999999999999999962   37766655443

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=96.05  E-value=0.0051  Score=50.14  Aligned_cols=95  Identities=14%  Similarity=0.054  Sum_probs=65.8

Q ss_pred             CcccccCCCcccccccCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHh
Q 048637           18 DDCVDYRGRPVHRANSGGW-KSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFV   96 (116)
Q Consensus        18 ~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~L   96 (116)
                      ....+|.+.+..+..+..+ +.++....+.++--+.+-.=.+|.+-|+. .+|.+.+-...+-.+.=+...+..|+.|..
T Consensus        12 ~~~~~~~~s~~~~~~~ps~~~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~   90 (498)
T KOG0637|consen   12 LLASESTQSSPFDLSRPSRLRKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSA   90 (498)
T ss_pred             cccchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceeccccccc
Confidence            3344666665555544444 45555555555555555555567777776 599999988888888888888999999999


Q ss_pred             hhcc---cchHHHHHHHHHH
Q 048637           97 GDSF---LGRYQTIFLLLLF  113 (116)
Q Consensus        97 aDr~---iGRr~~i~~~~il  113 (116)
                      |||-   +||||-++....+
T Consensus        91 SDrc~sr~GRRRPfI~~~s~  110 (498)
T KOG0637|consen   91 SDRCTSRYGRRRPFILAGSL  110 (498)
T ss_pred             ccccccccccccchHHHhhH
Confidence            9951   4999988776644

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=96.02  E-value=0.02  Score=46.95  Aligned_cols=53  Identities=17%  Similarity=0.063  Sum_probs=46.5

Q ss_pred             HHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           61 ITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        61 ~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      -..+.++++-+..+..++..+...+..+..|+.+.+.|| +|.|++.+.|+++.
T Consensus        69 ~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~r-fg~R~v~i~G~~v~  121 (509)
T KOG2504|consen   69 FEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNR-FGCRTVMIAGGLVA  121 (509)
T ss_pred             HHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhh-cCchHHHHHHHHHH
Confidence            344556789999999999999999999999999999999 59999999998765

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=95.97  E-value=0.019  Score=46.25  Aligned_cols=43  Identities=19%  Similarity=0.149  Sum_probs=35.9

Q ss_pred             ChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           71 STATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        71 ~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      +..-+..+-..+.+...+..+..|-+|||| |||+++..+++..
T Consensus        66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~v  108 (451)
T KOG2615|consen   66 SVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGV  108 (451)
T ss_pred             cchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHH
Confidence            344556667788899999999999999996 9999999888654

>PRK10054 putative transporter; Provisional

Probab=95.96  E-value=0.025  Score=44.08  Aligned_cols=67  Identities=9%  Similarity=-0.129  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhcc--ccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           46 EMAERFAFCGTGSNLITYLTG--PLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        46 ~~~~~~~~y~~~~~l~~yl~~--~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      .++....+.....+.+.|+..  +.+.+......+.....+......++.|++.|| .|+|+.+..+.++
T Consensus       215 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~l~~~~~~  283 (395)
T PRK10054        215 GFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNA-ANIRPLMTAGTLC  283 (395)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHcc-CCchhHHHHHHHH
Confidence            343344444444566666643  345556555666666666666677888999999 5999988777643

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=95.94  E-value=0.0017  Score=50.70  Aligned_cols=41  Identities=17%  Similarity=0.229  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           73 ATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        73 ~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      ...........+...++.+++|+++|| +|||+++.++.++.
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~-~GRk~~~~~~~~~~   86 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADR-YGRKPALIISALLM   86 (451)
T ss_pred             HHHHHHHHHHHhhhccccccccccccc-cccccccccccccc
Confidence            345667788888899999999999999 59999998877653

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=95.84  E-value=0.097  Score=40.20  Aligned_cols=50  Identities=10%  Similarity=-0.109  Sum_probs=37.5

Q ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHH
Q 048637           55 GTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQ  105 (116)
Q Consensus        55 ~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~  105 (116)
                      ....+.+.|+++.+|+++.+.........+...++.++.++++||+ |++.
T Consensus       225 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~  274 (394)
T PRK11652        225 VFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLM  274 (394)
T ss_pred             HHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence            3445667788888999998888777777777777888888888884 7444

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=95.84  E-value=0.05  Score=44.38  Aligned_cols=80  Identities=10%  Similarity=0.049  Sum_probs=53.7

Q ss_pred             ccCChHHHHHHHHHHHHH--HHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHH
Q 048637           32 NSGGWKSALFIIGVEMAE--RFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFL  109 (116)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~--~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~  109 (116)
                      .|.|+|+.+++....+.+  +..-++-+.-...|.....| +...+.+...++.++..+..+.+-|+.|| +|-|....+
T Consensus        37 ~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk-~GLR~a~ll  114 (480)
T KOG2563|consen   37 HRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDK-FGLRTALLL  114 (480)
T ss_pred             cccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcc-cchHHHHHH
Confidence            355655554444333222  22222222234445555556 77778889999999999999999999999 599999998


Q ss_pred             HHHH
Q 048637          110 LLLF  113 (116)
Q Consensus       110 ~~il  113 (116)
                      ++.+
T Consensus       115 gt~l  118 (480)
T KOG2563|consen  115 GTVL  118 (480)
T ss_pred             HHHH
Confidence            8864

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=95.77  E-value=0.12  Score=40.52  Aligned_cols=66  Identities=12%  Similarity=-0.123  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHh-hhcccchH
Q 048637           38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFV-GDSFLGRY  104 (116)
Q Consensus        38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~L-aDr~iGRr  104 (116)
                      .++.......+....++....+.|.|+++..|+++.+.........+...++..+.+.+ .|+ .++|
T Consensus       219 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~  285 (413)
T PRK15403        219 LFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPR  285 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-Cchh
Confidence            45555555555666677777889999999999999998887766666666666666654 455 3544

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=95.69  E-value=0.014  Score=37.27  Aligned_cols=31  Identities=16%  Similarity=0.340  Sum_probs=25.3

Q ss_pred             HHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           82 WSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        82 ~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      ..+...++.+++|+++|| +|||+.+..+.+.
T Consensus         7 ~~~~~~~~~~~~g~~~d~-~g~~~~~~~~~~~   37 (141)
T TIGR00880         7 YALGQLIYSPLSGLLTDR-FGRKPVLLVGLFI   37 (141)
T ss_pred             ehhHHHHHHhhHHHHHhh-cchhHHHHHHHHH
Confidence            455667788999999999 5999999887654

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=95.24  E-value=0.088  Score=42.27  Aligned_cols=57  Identities=26%  Similarity=0.262  Sum_probs=47.1

Q ss_pred             HHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           58 SNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        58 ~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      ..+=-|--+.+|++..+.+..+........++..+.|++..|-.|.+++-.+|++..
T Consensus       229 ~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~  285 (403)
T PF03209_consen  229 VILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLG  285 (403)
T ss_pred             HHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            344556666799999999999999999999999999999885579888888887653

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=95.10  E-value=0.51  Score=38.15  Aligned_cols=65  Identities=18%  Similarity=0.104  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637           47 MAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        47 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      ++.-..=-...+|+++|+.+..|+++.++...+..+-+...++=+++-++-.| +-..|.+.+.++
T Consensus       246 FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~-~~~~k~Laf~a~  310 (422)
T COG0738         246 FLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSR-IKPEKYLAFYAL  310 (422)
T ss_pred             HHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHH
Confidence            33333334556899999999899999999999999999999999999999889 588888887774

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=95.09  E-value=0.18  Score=41.54  Aligned_cols=66  Identities=14%  Similarity=0.040  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           47 MAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        47 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      ++.+.....+...+|.+.++.+|.++..-..+..+..+.+.++.++.+++.+| +++++.+..+.++
T Consensus       228 ~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~-~~~~~lv~~~~~~  293 (524)
T PF05977_consen  228 FLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRR-LSSRRLVLLASLL  293 (524)
T ss_pred             HHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCcchhhHHHHHH
Confidence            33344444455678999999999999999999999999999999999999999 5998888776654

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.07  E-value=0.046  Score=46.87  Aligned_cols=61  Identities=20%  Similarity=0.239  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHH-HHHHHHHhhhhhHHHHhhhcc
Q 048637           40 LFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNA-NKWSGTSQLLPLLGAFVGDSF  100 (116)
Q Consensus        40 ~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~-~~~~~~~~~~~~~~G~LaDr~  100 (116)
                      ...++...++...+-+..+|+|-|+.+++|+++..+.... .+...+..++.+++|++.-|+
T Consensus       395 ~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkf  456 (735)
T KOG3626|consen  395 MLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKF  456 (735)
T ss_pred             HHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeee
Confidence            4556777889999999999999999999999999999988 455556677999999998874

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=95.01  E-value=0.046  Score=44.86  Aligned_cols=91  Identities=11%  Similarity=0.100  Sum_probs=69.0

Q ss_pred             ccCCCcccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcc
Q 048637           22 DYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTG-PLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSF  100 (116)
Q Consensus        22 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~-~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~  100 (116)
                      |+......+..+.+||.+++.....+...+.++....-.-.|+++ ..+-+.+-...++....++..++.|++|+-+-| 
T Consensus        19 ~~~~~~~~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k-   97 (488)
T KOG2325|consen   19 DSDSLSPLDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNK-   97 (488)
T ss_pred             CCCccccccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccc-
Confidence            456666667778899999999988888888777666666667764 256667778888888899999999999999999 


Q ss_pred             cch-HHHHHHHHHH
Q 048637          101 LGR-YQTIFLLLLF  113 (116)
Q Consensus       101 iGR-r~~i~~~~il  113 (116)
                      .|. |+-++.|.++
T Consensus        98 ~~~~k~Pli~s~ii  111 (488)
T KOG2325|consen   98 TGSVKKPLIVSFLI  111 (488)
T ss_pred             cCCcccCHHHHHHH
Confidence            483 4444445543

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=94.95  E-value=0.11  Score=41.71  Aligned_cols=78  Identities=10%  Similarity=0.100  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           37 KSALFIIGVEMAERFAFCGTGSNLITYLTGP---LGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        37 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~---lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      |++|............|+..-...+.|.+..   .+.+........+...++..+...+..++-+| +|-|+.++++.+.
T Consensus       220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~r-ig~k~~Lllag~i  298 (412)
T PF01306_consen  220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINR-IGAKNLLLLAGVI  298 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHh-cChHhHHHHHHHH
Confidence            3455544444444455555555567776643   33445555666677777888888999999999 6999999998876


Q ss_pred             Hh
Q 048637          114 MS  115 (116)
Q Consensus       114 ~~  115 (116)
                      ++
T Consensus       299 ~~  300 (412)
T PF01306_consen  299 MA  300 (412)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=94.88  E-value=0.23  Score=40.42  Aligned_cols=47  Identities=17%  Similarity=0.195  Sum_probs=41.9

Q ss_pred             ccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           67 PLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        67 ~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      +.+.++.+-..+...+.....++.+.+|+++||+ |-|+++..+.++.
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~s  113 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLIS  113 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHH
Confidence            5778889999999999999999999999999995 9999998887653

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=94.87  E-value=0.32  Score=37.96  Aligned_cols=55  Identities=13%  Similarity=-0.044  Sum_probs=31.3

Q ss_pred             HHHHHHHHhccccCCChHHHHHHHHHHHHHHhh-hhhHHHHhhhcccchHHHHHHHHH
Q 048637           56 TGSNLITYLTGPLGQSTATAAQNANKWSGTSQL-LPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        56 ~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~-~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      ...++|.|+++..| ++.+.........+.... ..+++++..|| ++.++.+..+.+
T Consensus       227 ~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~  282 (400)
T PRK11646        227 VMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKR-FRLEHRLMAGLL  282 (400)
T ss_pred             HHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhHHHHHHHH
Confidence            45678999887666 555555554454444443 33444545455 576666555543

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=94.53  E-value=0.069  Score=43.79  Aligned_cols=36  Identities=17%  Similarity=0.230  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           77 QNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        77 ~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      .++.++.+...++.+++|+++||+ |||..+.+..++
T Consensus        64 ~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l   99 (485)
T KOG0569|consen   64 LIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLL   99 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHH
Confidence            345666777788889999999995 999888877654

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=94.49  E-value=0.01  Score=48.94  Aligned_cols=61  Identities=26%  Similarity=0.317  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHH-HHhhhhhHHHHhhhcc
Q 048637           40 LFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSG-TSQLLPLLGAFVGDSF  100 (116)
Q Consensus        40 ~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~-~~~~~~~~~G~LaDr~  100 (116)
                      ....+....+....-++.+|+|.|+..++++++.++..+.....+ ...++.++||++-.|+
T Consensus       308 ~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~  369 (539)
T PF03137_consen  308 MCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKF  369 (539)
T ss_dssp             --------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEe
Confidence            344556677777888899999999999999999999988866655 5566999999999884

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=94.32  E-value=0.39  Score=33.46  Aligned_cols=52  Identities=23%  Similarity=0.243  Sum_probs=36.6

Q ss_pred             HHHHHhccccCCCh--HHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637           59 NLITYLTGPLGQST--ATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        59 ~l~~yl~~~lg~~~--~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      ..+.+... .+.+.  ...............++.++.|.++||+ |||+.+..+..
T Consensus        24 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~   77 (338)
T COG0477          24 ALPLLLST-LSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLL   77 (338)
T ss_pred             HHHHHHHH-cCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHH
Confidence            44444443 33333  4566677777777777779999999995 99988877764

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=92.49  E-value=0.9  Score=38.34  Aligned_cols=83  Identities=6%  Similarity=-0.021  Sum_probs=57.1

Q ss_pred             ccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChH---HHHHHHHHHHHHHhhhhhHHHHhhhcccchHHH
Q 048637           30 RANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTA---TAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQT  106 (116)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~---~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~  106 (116)
                      +++|+ +|.+...+.+.+.....||.+..+.|+......+-+..   ..........+...++.++.|++.-+ +||-|.
T Consensus       304 ~Lf~~-~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~-ir~~Kw  381 (599)
T PF06609_consen  304 RLFKD-RRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSK-IRHIKW  381 (599)
T ss_pred             HHhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHH-ccchhH
Confidence            34443 56676667777888888999888999988776665543   34445556666677777888888877 587776


Q ss_pred             HH-HHHHHH
Q 048637          107 IF-LLLLFM  114 (116)
Q Consensus       107 i~-~~~il~  114 (116)
                      .+ ++++++
T Consensus       382 ~li~~~~~~  390 (599)
T PF06609_consen  382 QLIFGSVLM  390 (599)
T ss_pred             HHHHHHHHH
Confidence            64 444443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=91.06  E-value=0.21  Score=40.58  Aligned_cols=91  Identities=19%  Similarity=0.146  Sum_probs=59.7

Q ss_pred             hhhhhhhcccccCCcccccCCCcccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHH
Q 048637            5 DTETLMLQRQDTVDDCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSG   84 (116)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~   84 (116)
                      |+|.+...||+..+      .+... ..|+..+++...+++-..+.+-+- +..-+|..++. -|.|-+    -+.++.+
T Consensus         6 ~~e~~~~~~~~~~~------~~~~~-~~~~d~~~illLl~LYllQGiP~G-L~~~iP~lL~a-k~vSyt----~~a~fS~   72 (510)
T KOG3574|consen    6 DLESLNVDPNANWF------KKTHQ-TLKGDRSSILLLLFLYLLQGIPLG-LIGAIPLLLQA-KGVSYT----SQAIFSF   72 (510)
T ss_pred             chhhhcCCCCCchh------hhcch-hhhhhhhhHHHHHHHHHHcCCchh-HhhhhHHHhcC-CCcchh----hhhhhhh
Confidence            56666666666533      22222 278888899999999888888764 55578888872 344433    3445556


Q ss_pred             HHhh--hhhHHHHhhh-----cccchHHHHHH
Q 048637           85 TSQL--LPLLGAFVGD-----SFLGRYQTIFL  109 (116)
Q Consensus        85 ~~~~--~~~~~G~LaD-----r~iGRr~~i~~  109 (116)
                      +.+.  .-++.+.+-|     | +||||.-++
T Consensus        73 ay~P~sLKllWaPiVDs~y~k~-~GrrksWvv  103 (510)
T KOG3574|consen   73 AYWPFSLKLLWAPIVDSVYSKR-FGRRKSWVV  103 (510)
T ss_pred             hhhHHHHHHHHHhhhHHHHHHh-hccccceee
Confidence            6555  3477888888     9 699996543

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=90.72  E-value=1.2  Score=36.39  Aligned_cols=66  Identities=15%  Similarity=0.004  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637           46 EMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        46 ~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      ...+-...-++...+..-+...-|.+..+...+.......+.++.-..|.++|+ +|||+.+.+..+
T Consensus        86 gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~-~grr~~f~~T~l  151 (528)
T KOG0253|consen   86 GWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADT-IGRRKGFNLTFL  151 (528)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhh-hhcchhhhhhHH
Confidence            334444444444444444455678888888888888888888899999999999 699998877654

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=90.22  E-value=0.63  Score=37.95  Aligned_cols=54  Identities=24%  Similarity=0.181  Sum_probs=45.1

Q ss_pred             HHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHH-HhhhcccchHHHHHHHHHH
Q 048637           59 NLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGA-FVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        59 ~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G-~LaDr~iGRr~~i~~~~il  113 (116)
                      .++.|+...+|.+..+.............+..++.. .+.-. +|-++++..|...
T Consensus       263 ~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl~~  317 (463)
T KOG2816|consen  263 VLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGLLS  317 (463)
T ss_pred             EEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHHHH
Confidence            457788899999999999999999999999888777 77767 6999987777643

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=89.91  E-value=0.32  Score=40.17  Aligned_cols=79  Identities=15%  Similarity=0.093  Sum_probs=50.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHH--------HHHHHHHHHhh-hhhHHHHhhhcccchHH
Q 048637           35 GWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQ--------NANKWSGTSQL-LPLLGAFVGDSFLGRYQ  105 (116)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~--------~~~~~~~~~~~-~~~~~G~LaDr~iGRr~  105 (116)
                      |.+.++-..+.-+..-+++|....+...-+.+ .|..+.+...        ...+...++.+ +..+..++.|+ +|||+
T Consensus       302 hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~-ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~-iGRk~  379 (538)
T KOG0252|consen  302 HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSA-IGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDI-IGRKY  379 (538)
T ss_pred             HHHHHHHHHHHHHhhhhhhhccccHHHHHHHh-hccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeeh-hhhHH
Confidence            55666667777777788888887777666653 3333322222        22233333333 66778889999 69999


Q ss_pred             HHHHHHHHHh
Q 048637          106 TIFLLLLFMS  115 (116)
Q Consensus       106 ~i~~~~il~~  115 (116)
                      .-+.|.++++
T Consensus       380 iq~~GF~~~~  389 (538)
T KOG0252|consen  380 IQLMGFFIMT  389 (538)
T ss_pred             HHHhhHHHHH
Confidence            9988877653

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=89.87  E-value=2.8  Score=26.44  Aligned_cols=50  Identities=16%  Similarity=-0.044  Sum_probs=42.8

Q ss_pred             HhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           63 YLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        63 yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      .+.++.+++.+++..+.+.-.+...++.+.+.++.++ ..+++.+..+.+.
T Consensus        17 ~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~-~~~~~~~~~~l~~   66 (85)
T PF06779_consen   17 LMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRH-SRPRRLLRAGLLL   66 (85)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHH
Confidence            4566899999999999999999999999999999998 4778888777654

Note that many members are hypothetical proteins.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=89.86  E-value=2.1  Score=34.62  Aligned_cols=54  Identities=15%  Similarity=0.098  Sum_probs=46.2

Q ss_pred             HHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637           57 GSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        57 ~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      -..+..|++.+ |+++......-....+....++.++.++-.| +|-.|+=.++..
T Consensus       278 ~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~r-iGlvr~G~~~l~  331 (432)
T PF06963_consen  278 GGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKR-IGLVRAGLWSLW  331 (432)
T ss_pred             cHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHH
Confidence            34588999877 9999999999999999999999999999999 598777666554

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR00788 fbt folate/biopterin transporter

Probab=89.59  E-value=0.71  Score=37.13  Aligned_cols=49  Identities=8%  Similarity=-0.291  Sum_probs=43.7

Q ss_pred             ccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           65 TGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        65 ~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      +..+|+++...........+...++..+.+.+.+| +|.|+++.++.++.
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~-~~~r~~l~~~~~l~  328 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKT-FPYRLLFGVTTLLY  328 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHH
Confidence            35699999999999999999999999999999999 59999999888754

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=89.56  E-value=1.6  Score=35.60  Aligned_cols=31  Identities=19%  Similarity=0.156  Sum_probs=25.1

Q ss_pred             HHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           82 WSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        82 ~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      ......+..++-|.++||| |||..+......
T Consensus        71 ~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~  101 (463)
T KOG2816|consen   71 AGLLTLISSPLIGALSDRY-GRKVVLLLPLFG  101 (463)
T ss_pred             hHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHH
Confidence            3566777889999999996 999998877653

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=89.52  E-value=1.8  Score=35.63  Aligned_cols=46  Identities=7%  Similarity=-0.050  Sum_probs=38.5

Q ss_pred             cccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637           66 GPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        66 ~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      ..+|+...+-..+.+.+.+...++.+++|+|.|| ++-.+.+....+
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r-~~ls~~l~~~~~  119 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDR-FPLSKGLSVSGI  119 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHh-CChHHHHHHHHH
Confidence            4577888889999999999999999999999999 596666655544

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=89.21  E-value=0.71  Score=37.45  Aligned_cols=57  Identities=9%  Similarity=-0.073  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHHHhccccCC-----ChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHH
Q 048637           47 MAERFAFCGTGSNLITYLTGPLGQ-----STATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQ  105 (116)
Q Consensus        47 ~~~~~~~y~~~~~l~~yl~~~lg~-----~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~  105 (116)
                      ......+......++.|.++..+.     .- .......+-.+...++.|+.|++.|| +|+|+
T Consensus       279 ~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i-~~~~~~~~n~~~iii~~pl~~~l~~r-l~~r~  340 (489)
T PRK10207        279 VVFYILYAQMPTSLNFFAINNVHHEILGFSI-NPVSFQALNPFWVVVASPILAGIYTH-LGSKG  340 (489)
T ss_pred             HHHHHHHHHcccHHHHHHHHhccccccceEE-CHHHHHhHhHHHHHHHHHHHHHHHHH-HhhCC
Confidence            334445555556677777643222     21 12223333334455667778999999 59886

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.28  E-value=0.57  Score=38.12  Aligned_cols=47  Identities=13%  Similarity=0.012  Sum_probs=41.1

Q ss_pred             ccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           67 PLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        67 ~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      .++-+.++.........+++.+..|+.|.+.|| +|+|-.+++|...+
T Consensus       100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~-iGy~ipm~~Gl~vm  146 (464)
T KOG3764|consen  100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDR-IGYKIPMVAGLFVM  146 (464)
T ss_pred             CccccccchhHHHHHHHHHHHHhcccchhhHHH-hccccHHHHHHHHH
Confidence            367778888888899999999999999999999 69999999988654

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=87.38  E-value=1.7  Score=35.44  Aligned_cols=36  Identities=17%  Similarity=0.104  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637           76 AQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      ..+..++.++..+..|+-|-+||+- |+||.+.....
T Consensus        73 ~~~~sis~l~~all~P~lGa~aD~~-~~Rk~~l~~~~  108 (477)
T PF11700_consen   73 LYANSISGLLQALLAPFLGAIADYG-GRRKRFLLIFT  108 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccc-ccchHHHHHHH
Confidence            4567788888888899999999995 88887766554

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=86.98  E-value=0.11  Score=40.59  Aligned_cols=53  Identities=19%  Similarity=0.171  Sum_probs=42.8

Q ss_pred             HHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           60 LITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        60 l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      +..|+.+..|+.+.+..+...+..+....+..+.|-|+|+ .||||..+..++.
T Consensus        59 YvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDk-qGRKracvtycit  111 (454)
T KOG4332|consen   59 YVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCIT  111 (454)
T ss_pred             eeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhh-hccccceeeehHH
Confidence            4456677789999999888888888888888999999999 6999987655543

>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=85.39  E-value=1.2  Score=34.72  Aligned_cols=67  Identities=16%  Similarity=0.104  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHh---------hhcccchHHH
Q 048637           37 KSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFV---------GDSFLGRYQT  106 (116)
Q Consensus        37 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~L---------aDr~iGRr~~  106 (116)
                      +.+.++++=. .+-..--..++|+..|+++ .|+++..........++.-.+..|+.|..         -|| +|||+.
T Consensus        18 svf~yGvGHm-lNDitAScWFTYlllfltq-iglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr-~G~~~~   93 (412)
T KOG4830|consen   18 SVFAYGVGHM-LNDITASCWFTYLLLFLTQ-IGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDR-IGRRMS   93 (412)
T ss_pred             eeeeechhHH-HhhHHHHHHHHHHHHHHHH-hcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhh-hcceee
Confidence            3344444432 2333334577899999985 67777777788889999999999998744         468 588764

>TIGR01272 gluP glucose/galactose transporter

Probab=83.43  E-value=9.1  Score=28.98  Aligned_cols=38  Identities=18%  Similarity=0.142  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHH
Q 048637           73 ATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLL  111 (116)
Q Consensus        73 ~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~  111 (116)
                      .++..+.....+...+.+++.|+++|+ +|.+..+.+..
T Consensus       264 ~~asai~~~~~~Gg~i~P~l~G~lad~-~g~~~a~~v~~  301 (310)
T TIGR01272       264 SQGSGILCLAIVGGAIVPLLQGSLADC-LGIQLAFALPV  301 (310)
T ss_pred             hhhHHHHHHHHhcchHHHHHHHHHHHh-ccchHHHHHHH
Confidence            344444566666778889999999999 59877665433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=83.35  E-value=2.9  Score=33.57  Aligned_cols=51  Identities=20%  Similarity=0.182  Sum_probs=45.9

Q ss_pred             HhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           63 YLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        63 yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      =+++.+|++.+.+...+++=.++...+.|++.+|+-| +|..|.+..+.+++
T Consensus        37 ~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~-~g~er~l~~~Llli   87 (395)
T COG2807          37 EIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARR-FGEERSLFLALLLI   87 (395)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhhHHHHHHHHHHH
Confidence            3567799999999999999999999999999999999 69999999887754

>COG5505 Predicted integral membrane protein [Function unknown]

Probab=80.52  E-value=2.6  Score=33.20  Aligned_cols=63  Identities=13%  Similarity=0.162  Sum_probs=43.2

Q ss_pred             chhhhhhhcccccCCcccccCCCcccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChH
Q 048637            4 SDTETLMLQRQDTVDDCVDYRGRPVHRANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTA   73 (116)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~   73 (116)
                      -|++.|+-+.|.+-+.-.+|++.|..-.      -+.+..++...-.+..+.+..+++++ +..++....
T Consensus       184 pdesKL~A~~~e~a~~e~ywKrkp~Sl~------D~afl~Gislav~AVa~~Is~~l~~~-s~gl~~~~g  246 (384)
T COG5505         184 PDESKLKADGNEGASAESYWKRKPISLK------DIAFLAGISLAVVAVAMKISGYLKSI-SHGLLTGLG  246 (384)
T ss_pred             ccHHHHhhhhhhhhhhhhhhhcCCccHH------HHHHHhhHHHHHHHHHHHHHhhcccc-ccccccccc
Confidence            4777788777766555567887776543      45667777777777888888899985 555554433

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=80.18  E-value=14  Score=30.35  Aligned_cols=80  Identities=10%  Similarity=-0.119  Sum_probs=52.5

Q ss_pred             ccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCCChHH----------HHHHHHHHHHHHhhhhhHHHHhhh
Q 048637           30 RANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTG-PLGQSTAT----------AAQNANKWSGTSQLLPLLGAFVGD   98 (116)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~-~lg~~~~~----------a~~~~~~~~~~~~~~~~~~G~LaD   98 (116)
                      +.+|+-||.+...+.+.++...+++.+..|...|.-+ ..|-++.+          ......+..+...+..++--++..
T Consensus       251 ~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~  330 (477)
T TIGR01301       251 GAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCR  330 (477)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567889999999999999999999998898888763 34433211          122233333444444455667788


Q ss_pred             cccch-HHHHHHH
Q 048637           99 SFLGR-YQTIFLL  110 (116)
Q Consensus        99 r~iGR-r~~i~~~  110 (116)
                      | +|+ |++..++
T Consensus       331 ~-~g~~k~~~~~s  342 (477)
T TIGR01301       331 G-WGAGKRLWGIV  342 (477)
T ss_pred             H-hccchhHHHHH
Confidence            8 585 6665555

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=80.08  E-value=2.9  Score=34.07  Aligned_cols=55  Identities=18%  Similarity=0.126  Sum_probs=34.7

Q ss_pred             HHHHHHHHhccccCC---ChHHHH----HHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHH
Q 048637           56 TGSNLITYLTGPLGQ---STATAA----QNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLL  111 (116)
Q Consensus        56 ~~~~l~~yl~~~lg~---~~~~a~----~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~  111 (116)
                      .+.+.|.|+++..+-   ++.++.    ....++.+...+..|+-|-++|.. |+||-.....
T Consensus        34 tt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f   95 (438)
T COG2270          34 TTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFF   95 (438)
T ss_pred             eeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHH
Confidence            334567777665444   443333    344566667777888889999995 8776654433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	116
2xut_A	524	Proton/peptide symporter family protein; transport	1e-21
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	2e-06

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score = 87.4 bits (217), Expect = 1e-21
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 7/91 (7%)

Query: 31  ANSGGWKSAL-FIIGVEMAERFAFCGTGSNLITYLT------GPLGQSTATAAQNANKWS 83
            ++  W   + +II  E  ERF+F G  + L  +L        P     A A    + + 
Sbjct: 5   VDAPKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFV 64

Query: 84  GTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM 114
                 PLLG ++ D F G+Y TI  L L  
Sbjct: 65  IGVYFFPLLGGWIADRFFGKYNTILWLSLIY 95

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 44.0 bits (104), Expect = 2e-06
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 37  KSALFIIGVEMAERFAFCGTGSNLITYLT-----GPLGQSTATAAQNANKWSGTSQLLPL 91
                +   EM ERF++ G  + L+ Y+      G L  + ATAA     ++    L   
Sbjct: 13  LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGT 72

Query: 92  LGAFVGDSFLGRYQTIFLLLLFM 114
           +G FV D  +G    +F   + +
Sbjct: 73  IGGFVADRIIGARPAVFWGGVLI 95

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	116
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.09
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.86
2xut_A	524	Proton/peptide symporter family protein; transport	98.86
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.73
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.56
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.49
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.42
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.24
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	97.95
2cfq_A	417	Lactose permease; transport, transport mechanism,	97.84
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	97.82
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	97.51
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	97.48

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.09  E-value=7.2e-10  Score=85.47  Aligned_cols=83  Identities=25%  Similarity=0.269  Sum_probs=73.7

Q ss_pred             cccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cCCChHHHHHHHHHHHHHHhhhhhHHHHhhhc-ccchH
Q 048637           31 ANSGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGP-----LGQSTATAAQNANKWSGTSQLLPLLGAFVGDS-FLGRY  104 (116)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~-----lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr-~iGRr  104 (116)
                      ..+++++.++......+++...+|++..+++.|+++.     +|++..+...+.....+...++.+++|+++|| + |||
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r   85 (491)
T 4aps_A            7 TFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GAR   85 (491)
T ss_dssp             ----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHH
T ss_pred             hhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cch
Confidence            3466778889999999999999999999999999988     99999999999999999999999999999999 6 999


Q ss_pred             HHHHHHHHHH
Q 048637          105 QTIFLLLLFM  114 (116)
Q Consensus       105 ~~i~~~~il~  114 (116)
                      +++..+.++.
T Consensus        86 ~~~~~~~~~~   95 (491)
T 4aps_A           86 PAVFWGGVLI   95 (491)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999887654

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.86  E-value=4.3e-09  Score=80.54  Aligned_cols=75  Identities=13%  Similarity=-0.051  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           38 SALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        38 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      +.+......+.....+.....++|.|+++++|+++.+...+.....+...++.+++|+++|| +||||++.++.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~~~   82 (417)
T 2cfq_A            8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITG   82 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHH
Confidence            34444444455555666667899999998899999999999999999999999999999999 5999999987764

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.86  E-value=5.8e-09  Score=81.08  Aligned_cols=80  Identities=30%  Similarity=0.456  Sum_probs=68.8

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC------CChHHHHHHHHHHHHHHhhhhhHHHHhhhccc-chHH
Q 048637           33 SGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLG------QSTATAAQNANKWSGTSQLLPLLGAFVGDSFL-GRYQ  105 (116)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg------~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~i-GRr~  105 (116)
                      +++++.++...+..++....+|+...+++.|+++++|      ++..+...+...+.+...++.+++|+++|| + |||+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~   86 (524)
T 2xut_A            8 PKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYN   86 (524)
T ss_dssp             -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHH
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchH
Confidence            3455667777788888999999999999999999999      999999999999999999999999999999 7 9999


Q ss_pred             HHHHHHHH
Q 048637          106 TIFLLLLF  113 (116)
Q Consensus       106 ~i~~~~il  113 (116)
                      ++.++.++
T Consensus        87 ~~~~~~~~   94 (524)
T 2xut_A           87 TILWLSLI   94 (524)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99887764

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.73  E-value=9.8e-08  Score=72.06  Aligned_cols=80  Identities=9%  Similarity=-0.047  Sum_probs=65.1

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHH
Q 048637           33 SGGWKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLL  112 (116)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~i  112 (116)
                      +++++.++......+......+.....+|. +.+++|++..+...+...+.+...++.+++|+++|| +|||++++++.+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~   99 (438)
T 3o7q_A           22 RSYIIPFALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLF   99 (438)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHH
Confidence            455666666666666666666666666666 556799999999999999999999999999999999 599999998886


Q ss_pred             HH
Q 048637          113 FM  114 (116)
Q Consensus       113 l~  114 (116)
                      +.
T Consensus       100 ~~  101 (438)
T 3o7q_A          100 LY  101 (438)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.56  E-value=4.1e-07  Score=68.59  Aligned_cols=76  Identities=13%  Similarity=0.008  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-hccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           38 SALFIIGVEMAERFAFCGTGSNLITY-LTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        38 ~~~~~~~~~~~~~~~~y~~~~~l~~y-l~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      .++......++....++....++|.| +++.+|++..++........+...++.+++|+++|| +|||+++..+.++.
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~  335 (438)
T 3o7q_A          259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIA  335 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHH
Confidence            34555555566667778888999999 888889999999999999999999999999999999 59999998877643

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.49  E-value=3.5e-07  Score=69.14  Aligned_cols=76  Identities=12%  Similarity=-0.098  Sum_probs=58.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           36 WKSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      ++.++......+......+....++|.+.++ + .+..+...+.....+...++.+++|+++|| +|||+++.++.++.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~  102 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-G-FSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILA  102 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh-cCchHHHHHHHHHH
Confidence            3444455555555555655566667766654 6 999999999999999999999999999999 59999999887654

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.42  E-value=2.7e-06  Score=64.22  Aligned_cols=76  Identities=13%  Similarity=0.022  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhccc--chHHHHHHHHHH
Q 048637           37 KSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFL--GRYQTIFLLLLF  113 (116)
Q Consensus        37 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~i--GRr~~i~~~~il  113 (116)
                      +.++......++....+++...++|.|+++.+|++..++........+...++.+++|+++|| +  |||+.+..+.++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~  329 (451)
T 1pw4_A          252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMT  329 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHH
Confidence            456666667777788888899999999999899999999999999999999999999999999 8  999988776644

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.24  E-value=2.7e-06  Score=63.21  Aligned_cols=70  Identities=11%  Similarity=0.049  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           43 IGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        43 ~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      ....+............+|.+. +++|.++.+...+.....+...++.+++|+++|| +|||+++..+.++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~   75 (375)
T 2gfp_A            6 VLLVAVGQMAQTIYIPAIADMA-RDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIF   75 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-TTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHH
Confidence            3444455555555556666654 5699999999999999999999999999999999 59999998877643

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=97.95  E-value=1.9e-05  Score=60.42  Aligned_cols=39  Identities=10%  Similarity=0.131  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           75 AAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        75 a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      ...+...+.+...++.+++|+++|| +|||+++.++.++.
T Consensus        57 ~g~~~s~~~~G~~iG~~~~G~laDr-~GRk~~l~~~~~l~   95 (491)
T 4gc0_A           57 LGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLF   95 (491)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHH
Confidence            3455566777888899999999999 59999999887653

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=97.84  E-value=8.8e-05  Score=56.43  Aligned_cols=65  Identities=6%  Similarity=0.052  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHHHHhccccCCC---hHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           48 AERFAFCGTGSNLITYLTGPLGQS---TATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        48 ~~~~~~y~~~~~l~~yl~~~lg~~---~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      +....++....++|.|+...++..   .........+..+...++.+++|+++|| +|||+++..+.++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~~~~  298 (417)
T 2cfq_A          231 GVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTI  298 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHH
Confidence            333445555566888887655432   2333444445556667788999999999 5999998877654

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=97.82  E-value=1.7e-05  Score=60.70  Aligned_cols=73  Identities=14%  Similarity=-0.009  Sum_probs=51.1

Q ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           39 ALFIIGVE-MAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        39 ~~~~~~~~-~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      ........ +.....++.+..|.+ ++.+..+.+............+...++.++++++.|| +|||+.++.+...
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~Grr~~~~~~~~~  351 (491)
T 4gc0_A          278 IVIGVMLSIFQQFVGINVVLYYAP-EVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALG  351 (491)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHH-HHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHhcch-HHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh-hcCcchhccchHH
Confidence            33433333 333334444444444 4445678888888888888888899999999999999 5999998877654

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=97.51  E-value=9.8e-05  Score=54.65  Aligned_cols=67  Identities=6%  Similarity=-0.128  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchH
Q 048637           37 KSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRY  104 (116)
Q Consensus        37 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr  104 (116)
                      +.++......++....++....++|.|+++.+|+++.++........+...++.++.|+++|| +|++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~  265 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTL  265 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTH-HHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence            345555666667777888888999999998899999999999999999999999999999999 4873

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=97.48  E-value=5.3e-05  Score=58.09  Aligned_cols=69  Identities=9%  Similarity=-0.162  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHH
Q 048637           39 ALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIF  108 (116)
Q Consensus        39 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~  108 (116)
                      .+............++....+++.|..+..+.+...+........+...++.++.|+++|| +|||+...
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~r~~~~  353 (491)
T 4aps_A          285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA-WKKNQPSS  353 (491)
T ss_dssp             HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH-TTTC---C
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH-HhccCCCc
Confidence            3334444455555666677788999988888886666667777778888889999999999 59986543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	116
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.03
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.66
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.13
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	97.35

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=4.5e-10  Score=80.30  Aligned_cols=76  Identities=13%  Similarity=-0.050  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           37 KSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        37 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      |+.+......+.....+.....++|.|+++++|+++++...+..+..+...++.+++|+++|| +||||+++++.+.
T Consensus         7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr-~grr~~l~~~~~~   82 (417)
T d1pv7a_           7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITG   82 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHH-HTTCTHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHH
Confidence            456666666666777777778899999999999999999999999999999999999999999 5999999877654

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=4.4e-08  Score=71.68  Aligned_cols=53  Identities=15%  Similarity=0.027  Sum_probs=46.2

Q ss_pred             HHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHH
Q 048637           59 NLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLF  113 (116)
Q Consensus        59 ~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il  113 (116)
                      ....+++ ++|++.++...+.+.+.+...++.+++|+++|| +|||+++.++.++
T Consensus        46 ~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~~~~   98 (447)
T d1pw4a_          46 LAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLIL   98 (447)
T ss_dssp             HHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHH
T ss_pred             HHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHH
Confidence            3444665 589999999999999999999999999999999 5999999888764

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.13  E-value=7.8e-06  Score=59.29  Aligned_cols=68  Identities=15%  Similarity=-0.020  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHH
Q 048637           37 KSALFIIGVEMAERFAFCGTGSNLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQ  105 (116)
Q Consensus        37 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~  105 (116)
                      +.++......++.....+....++|.|+.+..|++..++........+...++.+++|+++|| ++|++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~  316 (447)
T d1pw4a_         249 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGN  316 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTC
T ss_pred             chHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhh-ccccc
Confidence            445556666677777888888999999999999999999999999999999999999999999 58764

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=8.1e-05  Score=52.15  Aligned_cols=55  Identities=13%  Similarity=0.083  Sum_probs=41.6

Q ss_pred             HHHHHhccccCCChHHHHHHHHHHHHHHhhhhhHHHHhhhcccchHHHHHHHHHHH
Q 048637           59 NLITYLTGPLGQSTATAAQNANKWSGTSQLLPLLGAFVGDSFLGRYQTIFLLLLFM  114 (116)
Q Consensus        59 ~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~~~G~LaDr~iGRr~~i~~~~il~  114 (116)
                      ..+.+.....+.+............+...++.++.|+++|| +|+++++..+.++.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~~~~~~~~~~~~  299 (417)
T d1pv7a_         245 NFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIM  299 (417)
T ss_dssp             HHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH-HCHHHHHHHHHHHH
T ss_pred             ccccccccccccchhhhcccccccccccccchhhhhhhhcc-cccccchhhhHHHH
Confidence            33333444456666677777778888888899999999999 59999998887654